Query 038219
Match_columns 435
No_of_seqs 190 out of 1135
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 2.2E-57 4.8E-62 449.1 36.0 348 53-421 2-362 (362)
2 PLN03146 aspartyl protease fam 100.0 4.3E-57 9.2E-62 456.6 36.6 333 43-431 81-431 (431)
3 cd05472 cnd41_like Chloroplast 100.0 2.1E-55 4.6E-60 426.5 34.0 297 46-428 1-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 3.1E-53 6.6E-58 426.1 34.1 334 43-429 43-397 (398)
5 PTZ00165 aspartyl protease; Pr 100.0 3E-53 6.6E-58 430.7 31.0 310 34-420 109-446 (482)
6 cd05478 pepsin_A Pepsin A, asp 100.0 5.2E-53 1.1E-57 413.0 30.3 307 37-419 2-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 4.9E-53 1.1E-57 414.7 29.9 308 43-419 3-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 8.3E-53 1.8E-57 411.4 28.8 301 47-419 1-316 (316)
9 cd05488 Proteinase_A_fungi Fun 100.0 2.3E-52 4.9E-57 408.9 29.6 308 37-419 2-320 (320)
10 cd06098 phytepsin Phytepsin, a 100.0 7.8E-52 1.7E-56 404.5 30.6 301 37-419 2-317 (317)
11 cd05477 gastricsin Gastricsins 100.0 1.8E-51 3.9E-56 402.4 32.1 304 44-419 1-317 (318)
12 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.4E-51 3.1E-56 404.1 30.6 295 45-429 2-326 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.3E-51 9.2E-56 401.2 30.5 312 37-419 3-329 (329)
14 cd05476 pepsin_A_like_plant Ch 100.0 8.3E-51 1.8E-55 387.5 29.5 262 46-428 1-265 (265)
15 PTZ00147 plasmepsin-1; Provisi 100.0 6.2E-51 1.4E-55 410.8 30.1 312 32-421 126-450 (453)
16 cd05487 renin_like Renin stimu 100.0 1.2E-50 2.6E-55 397.7 30.4 307 42-419 4-325 (326)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.6E-50 3.5E-55 407.0 31.5 311 33-421 126-449 (450)
18 cd05475 nucellin_like Nucellin 100.0 2.1E-50 4.5E-55 386.2 29.9 263 45-419 1-270 (273)
19 cd05473 beta_secretase_like Be 100.0 8.3E-50 1.8E-54 397.5 29.2 321 45-431 2-350 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 2.1E-47 4.6E-52 369.8 26.5 276 45-419 1-294 (295)
21 cd06097 Aspergillopepsin_like 100.0 1E-46 2.3E-51 361.8 25.2 266 47-419 1-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.6E-45 5.5E-50 358.5 21.2 303 46-419 1-316 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 4.5E-44 9.7E-49 343.9 27.9 274 47-419 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.6E-29 3.4E-34 222.8 14.7 159 47-227 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.4E-26 3E-31 203.9 17.0 155 263-419 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 2.5E-19 5.4E-24 147.1 10.9 107 49-188 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.5 0.00025 5.4E-09 55.9 6.4 94 45-190 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.5 0.013 2.8E-07 48.7 7.6 37 36-75 2-38 (121)
29 cd05479 RP_DDI RP_DDI; retrope 94.4 1.2 2.6E-05 37.0 12.3 24 393-416 100-123 (124)
30 PF13650 Asp_protease_2: Aspar 94.2 0.39 8.4E-06 36.8 8.5 24 49-74 1-24 (90)
31 TIGR03698 clan_AA_DTGF clan AA 92.2 1.3 2.8E-05 35.8 8.8 23 393-415 85-107 (107)
32 PF08284 RVP_2: Retroviral asp 92.1 0.37 8E-06 40.8 5.7 26 394-419 106-131 (135)
33 cd05484 retropepsin_like_LTR_2 91.7 0.18 4E-06 39.3 3.2 27 47-75 1-27 (91)
34 PF13975 gag-asp_proteas: gag- 87.3 1 2.2E-05 33.5 4.2 31 43-75 5-35 (72)
35 PF13650 Asp_protease_2: Aspar 85.4 1.5 3.2E-05 33.5 4.3 21 294-314 11-31 (90)
36 cd05484 retropepsin_like_LTR_2 82.6 2.5 5.4E-05 32.8 4.6 30 270-314 4-33 (91)
37 PF12384 Peptidase_A2B: Ty3 tr 82.5 8.2 0.00018 33.5 7.8 21 294-314 47-67 (177)
38 PF00077 RVP: Retroviral aspar 82.4 1.8 4E-05 34.0 3.8 27 48-76 7-33 (100)
39 TIGR02281 clan_AA_DTGA clan AA 81.8 2.8 6E-05 34.7 4.8 36 261-314 9-44 (121)
40 PF13975 gag-asp_proteas: gag- 80.0 4.3 9.4E-05 30.0 4.9 20 295-314 22-41 (72)
41 cd05479 RP_DDI RP_DDI; retrope 79.9 2.7 5.8E-05 34.9 4.1 30 43-74 13-42 (124)
42 PF11925 DUF3443: Protein of u 79.9 66 0.0014 31.8 15.6 31 45-75 22-57 (370)
43 COG3577 Predicted aspartyl pro 77.3 11 0.00024 33.9 7.3 43 30-75 90-132 (215)
44 cd05483 retropepsin_like_bacte 77.0 5.4 0.00012 30.7 4.9 21 294-314 15-35 (96)
45 cd06095 RP_RTVL_H_like Retrope 76.0 4.5 9.8E-05 31.0 4.1 20 295-314 12-31 (86)
46 cd05482 HIV_retropepsin_like R 70.1 5.5 0.00012 30.9 3.2 24 50-75 2-25 (87)
47 PF00077 RVP: Retroviral aspar 66.8 7.1 0.00015 30.6 3.4 26 269-309 8-33 (100)
48 cd06095 RP_RTVL_H_like Retrope 66.2 6.9 0.00015 30.0 3.1 24 50-75 2-25 (86)
49 COG3577 Predicted aspartyl pro 60.0 22 0.00047 32.2 5.4 36 261-314 103-138 (215)
50 cd05481 retropepsin_like_LTR_1 59.5 12 0.00027 29.2 3.5 21 294-314 12-32 (93)
51 PF09668 Asp_protease: Asparty 51.9 25 0.00055 29.2 4.3 31 269-314 27-57 (124)
52 cd05475 nucellin_like Nucellin 51.6 20 0.00044 33.9 4.3 44 33-76 145-194 (273)
53 COG5550 Predicted aspartyl pro 48.2 15 0.00032 30.3 2.3 20 295-314 29-49 (125)
54 PF09668 Asp_protease: Asparty 47.9 27 0.00058 29.0 3.8 30 43-74 21-50 (124)
55 PF12384 Peptidase_A2B: Ty3 tr 44.9 28 0.00061 30.3 3.5 44 32-75 16-61 (177)
56 PF02160 Peptidase_A3: Caulifl 44.7 1.9E+02 0.0042 26.1 9.0 26 393-419 92-117 (201)
57 cd06094 RP_Saci_like RP_Saci_l 43.2 1.6E+02 0.0034 22.9 8.0 18 293-310 10-27 (89)
58 cd05476 pepsin_A_like_plant Ch 36.4 57 0.0012 30.6 4.8 46 31-76 131-193 (265)
59 cd05471 pepsin_like Pepsin-lik 36.0 53 0.0012 30.7 4.5 45 31-76 167-219 (283)
60 PLN03146 aspartyl protease fam 36.0 49 0.0011 33.8 4.4 43 33-75 267-323 (431)
61 cd06097 Aspergillopepsin_like 33.5 58 0.0013 30.7 4.3 42 32-75 166-214 (278)
62 TIGR03698 clan_AA_DTGF clan AA 33.4 51 0.0011 26.4 3.3 26 49-74 2-32 (107)
63 cd05472 cnd41_like Chloroplast 32.5 44 0.00095 32.0 3.3 46 31-76 131-188 (299)
64 cd05474 SAP_like SAPs, pepsin- 30.1 69 0.0015 30.3 4.2 44 33-76 139-195 (295)
65 PF08284 RVP_2: Retroviral asp 27.6 78 0.0017 26.6 3.6 29 45-75 20-48 (135)
66 cd06098 phytepsin Phytepsin, a 25.9 76 0.0017 30.7 3.7 31 45-75 188-226 (317)
67 PF07172 GRP: Glycine rich pro 25.9 30 0.00064 27.3 0.7 20 1-20 1-21 (95)
68 cd05485 Cathepsin_D_like Cathe 25.2 82 0.0018 30.7 3.8 40 33-75 181-226 (329)
69 cd06096 Plasmepsin_5 Plasmepsi 23.4 93 0.002 30.2 3.8 31 45-75 208-247 (326)
70 cd05489 xylanase_inhibitor_I_l 23.3 96 0.0021 30.8 3.9 44 33-76 186-246 (362)
71 KOG1339 Aspartyl protease [Pos 22.8 1.9E+02 0.0042 29.0 6.1 44 32-76 230-285 (398)
72 cd00303 retropepsin_like Retro 20.7 1.6E+02 0.0035 20.6 3.9 20 294-313 11-30 (92)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.2e-57 Score=449.06 Aligned_cols=348 Identities=48% Similarity=0.856 Sum_probs=273.2
Q ss_pred eCCCCce-EEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcc-cCCCCCCCCCCCCCccceeecccCCc
Q 038219 53 QRTPLVP-VKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCID-EYSCSPGPGCNNHTCSRFPANSISRE 130 (435)
Q Consensus 53 iGtP~Q~-~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~y~y~~g 130 (435)
+|||-.+ +.|+|||||+++||+|.+| +|+||+.++|++..|..+.++.|.. |.. ..++.|.++.|.|... .|+++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~-~sst~~~~~C~s~~C~~~~~~~~~~~~~~-~~~~~c~~~~C~y~~~-~y~~g 78 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG-HSSTYQTVPCSSSVCSLANRYHCPGTCGG-APGPGCGNNTCTAHPY-NPVTG 78 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC-CcCCCCccCcCChhhccccccCCCccccC-CCCCCCCCCcCeeEcc-ccccC
Confidence 6889888 9999999999999999986 5669999999999998877766542 221 2344687888999543 46677
Q ss_pred cceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCCCchhhhhhhccCCCCceE
Q 038219 131 STNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNFDRKFS 210 (435)
Q Consensus 131 ~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~FS 210 (435)
+.+.|++++|+|+|+..+ |+ ... .+.++++.|||+......++...++||||||++.+|++.||..++..+++||
T Consensus 79 s~t~G~l~~Dtl~~~~~~--g~--~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS 153 (362)
T cd05489 79 ECATGDLTQDVLSANTTD--GS--NPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFA 153 (362)
T ss_pred cEeeEEEEEEEEEecccC--CC--Ccc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceE
Confidence 566699999999996543 32 000 1368899999998864334445689999999999999999988776678899
Q ss_pred EecCCCCCCCceEEEcCCCCCCcCC------CCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCEEeecCccc
Q 038219 211 ICLSSSTTSNGAVFFGDVPFPNIDV------SKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGNVVPLNTSL 284 (435)
Q Consensus 211 ~~L~~~~~~~G~l~fGg~d~~~~~~------~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 284 (435)
+||.+.....|+|+||+.++ .++ .+.+.|+||+.++. .+.+|.|+|++|+||++.+.+++..
T Consensus 154 ~CL~~~~~~~g~l~fG~~~~--~~~~~~~~~~~~~~~tPl~~~~~----------~~~~Y~v~l~~IsVg~~~l~~~~~~ 221 (362)
T cd05489 154 LCLPSSPGGPGVAIFGGGPY--YLFPPPIDLSKSLSYTPLLTNPR----------KSGEYYIGVTSIAVNGHAVPLNPTL 221 (362)
T ss_pred EEeCCCCCCCeeEEECCCch--hcccccccccCCccccccccCCC----------CCCceEEEEEEEEECCEECCCCchh
Confidence 99998645689999999885 333 47899999987642 2579999999999999998877666
Q ss_pred ccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCC-CCcccceeccCCC----CcccCeEEEEEcCC
Q 038219 285 LSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPI-APFGACFNSSFIG----GTTAPEIHLVLPGN 359 (435)
Q Consensus 285 ~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~-~~~~~C~~~~~~~----~~~~P~i~~~f~g~ 359 (435)
+.+...+.+++||||||++++||+++|++|.++|.+++. ........ ...+.||...... ...+|+|+|+|+|+
T Consensus 222 ~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~ 300 (362)
T cd05489 222 SANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATA-RIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGG 300 (362)
T ss_pred ccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhc-ccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCC
Confidence 555445567899999999999999999999999998875 22222111 1125899854321 23799999999864
Q ss_pred ceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEeecC
Q 038219 360 NRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSL 421 (435)
Q Consensus 360 ~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 421 (435)
+++|+|||++|+++..++..|++++..+......||||+.|||++|+|||++++|||||+++
T Consensus 301 g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 301 GVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred CeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 58999999999998877789999987653224579999999999999999999999999864
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.3e-57 Score=456.56 Aligned_cols=333 Identities=26% Similarity=0.486 Sum_probs=265.5
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCC-------------CCCCCcccccCCcccccccccCC-CcccCCC
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQG-------------YVSTSYKPARCGSAQCKLARSKS-CIDEYSC 108 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c-------------~~Sst~~~~~C~~~~C~~~~~~~-~~~~~~~ 108 (435)
.+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|....... |.
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~----- 155 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCS----- 155 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCC-----
Confidence 578999999999999999999999999999999875 37999999999999997544321 21
Q ss_pred CCCCCCCCCCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEee
Q 038219 109 SPGPGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGL 188 (435)
Q Consensus 109 ~~~~~c~~~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGL 188 (435)
.++.|.|.+. |++|+.+.|.+++|+|+|++.. .+.+.++++.|||++...+. +....+|||||
T Consensus 156 ------~~~~c~y~i~--Ygdgs~~~G~l~~Dtltlg~~~--------~~~~~v~~~~FGc~~~~~g~-f~~~~~GilGL 218 (431)
T PLN03146 156 ------DENTCTYSYS--YGDGSFTKGNLAVETLTIGSTS--------GRPVSFPGIVFGCGHNNGGT-FDEKGSGIVGL 218 (431)
T ss_pred ------CCCCCeeEEE--eCCCCceeeEEEEEEEEeccCC--------CCcceeCCEEEeCCCCCCCC-ccCCCceeEec
Confidence 2346999999 8888765599999999996432 12346889999999987322 22357999999
Q ss_pred CCCCCchhhhhhhccCCCCceEEecCCCC---CCCceEEEcCCCCCCcCCC-CCceEeeCccCCCCCCCcccCCCCCcce
Q 038219 189 GRTQVSLPSQFSAAFNFDRKFSICLSSST---TSNGAVFFGDVPFPNIDVS-KSLIYTPLILNPVHNEGLAFKGDPSTDY 264 (435)
Q Consensus 189 g~~~~s~~~ql~~~~~i~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~~~-g~~~~~Pl~~~~~~~~~~~~~~~~~~~y 264 (435)
|+..+|+++||... +.++||+||.+.. ...|+|+||+.. ++. +.+.|+||+.+. .+.+|
T Consensus 219 G~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~----~~~~~~~~~tPl~~~~-----------~~~~y 281 (431)
T PLN03146 219 GGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNA----IVSGSGVVSTPLVSKD-----------PDTFY 281 (431)
T ss_pred CCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCcc----ccCCCCceEcccccCC-----------CCCeE
Confidence 99999999999764 4468999997531 347999999953 344 358999998642 25799
Q ss_pred EEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCC
Q 038219 265 FIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFI 344 (435)
Q Consensus 265 ~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~ 344 (435)
.|.|++|+||++.+.++...+. ..+.+++||||||++++||+++|++|+++|.+.+. ..+..+....+..||.....
T Consensus 282 ~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~-~~~~~~~~~~~~~C~~~~~~ 358 (431)
T PLN03146 282 YLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIG-GERVSDPQGLLSLCYSSTSD 358 (431)
T ss_pred EEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhc-cccCCCCCCCCCccccCCCC
Confidence 9999999999999887665543 13346899999999999999999999999998886 21212222345689985432
Q ss_pred CCcccCeEEEEEcCCceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEeecCCcc
Q 038219 345 GGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSLLSW 424 (435)
Q Consensus 345 ~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~~~~ 424 (435)
..+|+|+|+|+| +++.+|+++|++...++..|++++... +.||||+.|||++|+|||++++|||||+
T Consensus 359 --~~~P~i~~~F~G--a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa~----- 425 (431)
T PLN03146 359 --IKLPIITAHFTG--ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFKP----- 425 (431)
T ss_pred --CCCCeEEEEECC--CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeeec-----
Confidence 368999999987 899999999999877778899987542 3589999999999999999999999996
Q ss_pred cCCccCc
Q 038219 425 QTTCSKL 431 (435)
Q Consensus 425 ~~~C~~~ 431 (435)
.+|.+.
T Consensus 426 -~~C~~~ 431 (431)
T PLN03146 426 -TDCTKM 431 (431)
T ss_pred -CCcCcC
Confidence 899763
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.1e-55 Score=426.53 Aligned_cols=297 Identities=28% Similarity=0.529 Sum_probs=238.1
Q ss_pred eEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceeec
Q 038219 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPAN 125 (435)
Q Consensus 46 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~y 125 (435)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------~~~~i~- 39 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------CLYQVS- 39 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------------------CeeeeE-
Confidence 599999999999999999999999999988543 348888
Q ss_pred ccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCCCchhhhhhhccCC
Q 038219 126 SISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFNF 205 (435)
Q Consensus 126 ~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i 205 (435)
|++|+.+.|.+++|+|+|++. ..++++.|||+.... +.+...+||||||+...+++.|+..+ .
T Consensus 40 -Yg~Gs~~~G~~~~D~v~ig~~------------~~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~~--~ 102 (299)
T cd05472 40 -YGDGSYTTGDLATDTLTLGSS------------DVVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTASS--Y 102 (299)
T ss_pred -eCCCceEEEEEEEEEEEeCCC------------CccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhHh--h
Confidence 888886459999999999421 157889999998773 33346899999999999999998765 3
Q ss_pred CCceEEecCCCC-CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCEEeecCccc
Q 038219 206 DRKFSICLSSST-TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGNVVPLNTSL 284 (435)
Q Consensus 206 ~~~FS~~L~~~~-~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 284 (435)
+++||+||.+.. ...|+|+|||+|+ . .+++.|+||+.++. .+.+|.|++++|+|+++.+.+++..
T Consensus 103 ~~~FS~~L~~~~~~~~G~l~fGg~d~--~--~g~l~~~pv~~~~~----------~~~~y~v~l~~i~vg~~~~~~~~~~ 168 (299)
T cd05472 103 GGVFSYCLPDRSSSSSGYLSFGAAAS--V--PAGASFTPMLSNPR----------VPTFYYVGLTGISVGGRRLPIPPAS 168 (299)
T ss_pred cCceEEEccCCCCCCCceEEeCCccc--c--CCCceECCCccCCC----------CCCeEEEeeEEEEECCEECCCCccc
Confidence 479999998753 4589999999996 3 78999999987531 2479999999999999987654211
Q ss_pred ccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEEcCCceEEE
Q 038219 285 LSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVLPGNNRVWK 364 (435)
Q Consensus 285 ~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~ 364 (435)
..+..+||||||++++||+++|++|.+++.+... ...+......+..|+..++.....+|+|+|+|++ +++++
T Consensus 169 -----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~-g~~~~ 241 (299)
T cd05472 169 -----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA-AYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQG-GADVE 241 (299)
T ss_pred -----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc-cCCCCCCCCCCCccCcCCCCcCCccCCEEEEECC-CCEEE
Confidence 1246799999999999999999999999988764 2222222223346987765444579999999985 48999
Q ss_pred EcCCccEEEe-CCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEeecCCcccCCc
Q 038219 365 IYGANSMVRV-GKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSLLSWQTTC 428 (435)
Q Consensus 365 ip~~~y~~~~-~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~~~~~~~C 428 (435)
||+++|++.. ..+..|+++...... ...||||+.|||++|+|||++++|||||+ .+|
T Consensus 242 l~~~~y~~~~~~~~~~C~~~~~~~~~-~~~~ilG~~fl~~~~vvfD~~~~~igfa~------~~C 299 (299)
T cd05472 242 LDASGVLYPVDDSSQVCLAFAGTSDD-GGLSIIGNVQQQTFRVVYDVAGGRIGFAP------GGC 299 (299)
T ss_pred eCcccEEEEecCCCCEEEEEeCCCCC-CCCEEEchHHccceEEEEECCCCEEeEec------CCC
Confidence 9999999843 346789988765322 35799999999999999999999999995 777
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-53 Score=426.06 Aligned_cols=334 Identities=33% Similarity=0.546 Sum_probs=270.8
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCC--------------CCCCcccccCCcccccccccCCCcccCCC
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGY--------------VSTSYKPARCGSAQCKLARSKSCIDEYSC 108 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~--------------~Sst~~~~~C~~~~C~~~~~~~~~~~~~~ 108 (435)
.+++|+++|.||||||+|.|+|||||+++||+|..|. +|+|++.+.|.+..|......
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-------- 114 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-------- 114 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC--------
Confidence 4679999999999999999999999999999997762 688899999999888865432
Q ss_pred CCCCCCCCCCccceeecccCC-ccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCC-CCcceEE
Q 038219 109 SPGPGCNNHTCSRFPANSISR-ESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLA-TGVKGMA 186 (435)
Q Consensus 109 ~~~~~c~~~~~~~~~~y~y~~-g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~-~~~~GIl 186 (435)
.+.++.|.|.+. |++ +++. |++++|+|++++.+ .+.+++++|||+..+...... .+.+|||
T Consensus 115 ----~~~~~~C~y~i~--Ygd~~~~~-G~l~~Dtv~~~~~~----------~~~~~~~~FGc~~~~~g~~~~~~~~dGIl 177 (398)
T KOG1339|consen 115 ----CSPNSSCPYSIQ--YGDGSSTS-GYLATDTVTFGGTT----------SLPVPNQTFGCGTNNPGSFGLFAAFDGIL 177 (398)
T ss_pred ----cccCCcCceEEE--eCCCCcee-EEEEEEEEEEcccc----------ccccccEEEEeeecCccccccccccceEe
Confidence 236789999999 888 5566 99999999996421 136678999999998543111 4689999
Q ss_pred eeCCCCCchhhhhhhccCCCCceEEecCCCCC---CCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcc
Q 038219 187 GLGRTQVSLPSQFSAAFNFDRKFSICLSSSTT---SNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTD 263 (435)
Q Consensus 187 GLg~~~~s~~~ql~~~~~i~~~FS~~L~~~~~---~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~ 263 (435)
|||+..++++.|+.......++||+||.+... .+|.|+||+.|+ .++.+.+.|+||+.+. +.+
T Consensus 178 GLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~--~~~~~~l~~tPl~~~~------------~~~ 243 (398)
T KOG1339|consen 178 GLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDS--SHYTGSLTYTPLLSNP------------STY 243 (398)
T ss_pred ecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcc--cCcCCceEEEeeccCC------------Ccc
Confidence 99999999999999987766789999998732 479999999998 6678899999999764 259
Q ss_pred eEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccC
Q 038219 264 YFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSF 343 (435)
Q Consensus 264 y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~ 343 (435)
|.|.+.+|+|+++. .+.+..+..+ .+++|+||||++++||+++|++|.++|..... . .......+..|+....
T Consensus 244 y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~--~-~~~~~~~~~~C~~~~~ 316 (398)
T KOG1339|consen 244 YQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS--V-VGTDGEYFVPCFSIST 316 (398)
T ss_pred EEEEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee--c-cccCCceeeecccCCC
Confidence 99999999999977 5555554422 37899999999999999999999999988631 0 0111234458998764
Q ss_pred CCCcccCeEEEEEcCCceEEEEcCCccEEEeCCceE-EEEEEeCCCCCCCeeeechhhhcccEEEEeCC-CCEEEEeecC
Q 038219 344 IGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAM-CLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLA-KSRLGFSSSL 421 (435)
Q Consensus 344 ~~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~-C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~-~~rIGfa~~~ 421 (435)
.. ..+|.|+|+|++ +++|.+++++|++....+.. |++++..... ...||||+.|||+++++||.. ++|||||+.+
T Consensus 317 ~~-~~~P~i~~~f~~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~-~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~ 393 (398)
T KOG1339|consen 317 SG-VKLPDITFHFGG-GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDS-GPLWILGDVFQQNYLVVFDLGENSRVGFAPAL 393 (398)
T ss_pred Cc-ccCCcEEEEECC-CcEEEeCccceEEEECCCCCceeeEEecCCC-CceEEEchHHhCCEEEEEeCCCCCEEEecccc
Confidence 32 349999999996 59999999999998876444 9988776543 158999999999999999999 9999999855
Q ss_pred CcccCCcc
Q 038219 422 LSWQTTCS 429 (435)
Q Consensus 422 ~~~~~~C~ 429 (435)
.+|+
T Consensus 394 ----~~c~ 397 (398)
T KOG1339|consen 394 ----TNCS 397 (398)
T ss_pred ----ccCC
Confidence 5665
No 5
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=3e-53 Score=430.73 Aligned_cols=310 Identities=17% Similarity=0.236 Sum_probs=243.7
Q ss_pred eEEeEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCC
Q 038219 34 LALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPG 113 (435)
Q Consensus 34 ~~~pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~ 113 (435)
+..||.+ -.+.+|+++|+||||||+|+|+|||||+++||+|..| .+..|..+..|++. .+++
T Consensus 109 ~~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C-----------~~~~C~~~~~yd~s------~SST 170 (482)
T PTZ00165 109 LQQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKEC-----------KSGGCAPHRKFDPK------KSST 170 (482)
T ss_pred cceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhc-----------CcccccccCCCCcc------ccCC
Confidence 4566664 4688999999999999999999999999999999765 44567767667663 3444
Q ss_pred CCC--CCc---cceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEe
Q 038219 114 CNN--HTC---SRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAG 187 (435)
Q Consensus 114 c~~--~~~---~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlG 187 (435)
+.. +.. .+.+. |++|++. |.+++|+|+++ + +.++++.|||++..... .....+|||||
T Consensus 171 y~~~~~~~~~~~~~i~--YGsGs~~-G~l~~DtV~ig------~-------l~i~~q~FG~a~~~s~~~f~~~~~DGILG 234 (482)
T PTZ00165 171 YTKLKLGDESAETYIQ--YGTGECV-LALGKDTVKIG------G-------LKVKHQSIGLAIEESLHPFADLPFDGLVG 234 (482)
T ss_pred cEecCCCCccceEEEE--eCCCcEE-EEEEEEEEEEC------C-------EEEccEEEEEEEeccccccccccccceee
Confidence 433 222 46788 8999999 99999999994 3 47889999999876322 22246899999
Q ss_pred eCCCCC---------chhhhhhhccCC-CCceEEecCCCCCCCceEEEcCCCCCCcCC--CCCceEeeCccCCCCCCCcc
Q 038219 188 LGRTQV---------SLPSQFSAAFNF-DRKFSICLSSSTTSNGAVFFGDVPFPNIDV--SKSLIYTPLILNPVHNEGLA 255 (435)
Q Consensus 188 Lg~~~~---------s~~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~--~g~~~~~Pl~~~~~~~~~~~ 255 (435)
||++.. ++..+|.+|+.+ +++||+||.+..+.+|+|+|||+|+ ..+ .+++.|+|+..
T Consensus 235 Lg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~--~~~~~~g~i~~~Pv~~--------- 303 (482)
T PTZ00165 235 LGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADP--KYTLEGHKIWWFPVIS--------- 303 (482)
T ss_pred cCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCH--HHcCCCCceEEEEccc---------
Confidence 998754 467789999998 4789999987655689999999996 344 47899999974
Q ss_pred cCCCCCcceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 038219 256 FKGDPSTDYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPF 335 (435)
Q Consensus 256 ~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~ 335 (435)
..+|+|.+++|+|+++.+..... ...+|+||||+++++|+++|++|.+++...
T Consensus 304 -----~~yW~i~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------- 356 (482)
T PTZ00165 304 -----TDYWEIEVVDILIDGKSLGFCDR--------KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------- 356 (482)
T ss_pred -----cceEEEEeCeEEECCEEeeecCC--------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------
Confidence 47999999999999987765311 357999999999999999999888876321
Q ss_pred ccceeccCCCCcccCeEEEEEcCC---ceEEEEcCCccEEEe----CCceEEE-EEEeCCC--CCCCeeeechhhhcccE
Q 038219 336 GACFNSSFIGGTTAPEIHLVLPGN---NRVWKIYGANSMVRV----GKDAMCL-AFVDGGV--NPRTSVVIGGYQLEDNL 405 (435)
Q Consensus 336 ~~C~~~~~~~~~~~P~i~~~f~g~---~~~~~ip~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y 405 (435)
..|.... .+|+|+|+|+|. .+++.++|++|+++. ..+..|+ +++..+. ..++.||||++|||+||
T Consensus 357 ~~C~~~~-----~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy 431 (482)
T PTZ00165 357 EDCSNKD-----SLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYY 431 (482)
T ss_pred ccccccc-----cCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEE
Confidence 2587543 689999999861 358999999999974 1346897 6765432 12467999999999999
Q ss_pred EEEeCCCCEEEEeec
Q 038219 406 LEFNLAKSRLGFSSS 420 (435)
Q Consensus 406 vvfD~~~~rIGfa~~ 420 (435)
+|||++|+|||||++
T Consensus 432 ~VFD~~n~rIGfA~a 446 (482)
T PTZ00165 432 SIFDRDHMMVGLVPA 446 (482)
T ss_pred EEEeCCCCEEEEEee
Confidence 999999999999973
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5.2e-53 Score=412.99 Aligned_cols=307 Identities=18% Similarity=0.225 Sum_probs=243.2
Q ss_pred eEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCC
Q 038219 37 LVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNN 116 (435)
Q Consensus 37 pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~ 116 (435)
||.+ ..+.+|+++|.||||||++.|+|||||+++||+|..| ....|..+..|++ ..++++..
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C-----------~~~~c~~~~~f~~------~~Sst~~~ 63 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYC-----------SSQACSNHNRFNP------RQSSTYQS 63 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCC-----------CcccccccCcCCC------CCCcceee
Confidence 4554 3488999999999999999999999999999999765 3345655555554 24555666
Q ss_pred CCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCC-CCCcceEEeeCCCCC--
Q 038219 117 HTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGL-ATGVKGMAGLGRTQV-- 193 (435)
Q Consensus 117 ~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~-~~~~~GIlGLg~~~~-- 193 (435)
..|.|.+. |++|++. |.+++|+|+++ + +.++++.|||++....... ....+||||||++..
T Consensus 64 ~~~~~~~~--yg~gs~~-G~~~~D~v~ig------~-------~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~ 127 (317)
T cd05478 64 TGQPLSIQ--YGTGSMT-GILGYDTVQVG------G-------ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIAS 127 (317)
T ss_pred CCcEEEEE--ECCceEE-EEEeeeEEEEC------C-------EEECCEEEEEEEecCccccccccccceeeeccchhcc
Confidence 77889999 8888877 99999999994 3 4788999999986632211 134799999998654
Q ss_pred ----chhhhhhhccCCC-CceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEE
Q 038219 194 ----SLPSQFSAAFNFD-RKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268 (435)
Q Consensus 194 ----s~~~ql~~~~~i~-~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l 268 (435)
++..+|++++.|+ ++||+||.+....+|+|+|||+|+ .++.|++.|+|+.. +.+|.|.+
T Consensus 128 ~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~--~~~~g~l~~~p~~~--------------~~~w~v~l 191 (317)
T cd05478 128 SGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDP--SYYTGSLNWVPVTA--------------ETYWQITV 191 (317)
T ss_pred cCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCH--HHccCceEEEECCC--------------CcEEEEEe
Confidence 4788999999994 789999998755679999999997 67889999999963 47899999
Q ss_pred eEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcc
Q 038219 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTT 348 (435)
Q Consensus 269 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 348 (435)
++|+|+++.+.... +..+||||||++++||+++|++|.+++..... ........|+.. ..
T Consensus 192 ~~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~------~~~~~~~~C~~~-----~~ 251 (317)
T cd05478 192 DSVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN------QNGEMVVNCSSI-----SS 251 (317)
T ss_pred eEEEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc------cCCcEEeCCcCc-----cc
Confidence 99999999875321 35799999999999999999999888753321 111112356543 36
Q ss_pred cCeEEEEEcCCceEEEEcCCccEEEeCCceEEEE-EEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 349 APEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLA-FVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 349 ~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~C~~-~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+|.|+|+|+| ++++||+++|+... +..|+. +..... .+.||||++|||++|+|||++++|||||+
T Consensus 252 ~P~~~f~f~g--~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 252 MPDVVFTING--VQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCcEEEEECC--EEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 8999999976 89999999999765 468985 554432 35799999999999999999999999995
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.9e-53 Score=414.70 Aligned_cols=308 Identities=19% Similarity=0.269 Sum_probs=239.5
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccce
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRF 122 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 122 (435)
.+.+|+++|.||||||+++|+|||||+++||+|..|.. | +..|..+..|++. .|+++....|.|.
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~C~~~~~y~~~------~SsT~~~~~~~~~ 67 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSL--------L-DIACWLHHKYNSS------KSSTYVKNGTEFA 67 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCC--------C-CccccCcCcCCcc------cCcceeeCCcEEE
Confidence 47899999999999999999999999999999987731 1 2356655566653 4556666778999
Q ss_pred eecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEeeCCCCCc------h
Q 038219 123 PANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRTQVS------L 195 (435)
Q Consensus 123 ~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s------~ 195 (435)
+. |++|++. |.+++|+|+|+ + +.++++.|||++..... ......+||||||++..+ +
T Consensus 68 i~--Yg~G~~~-G~~~~D~v~~g------~-------~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~ 131 (325)
T cd05490 68 IQ--YGSGSLS-GYLSQDTVSIG------G-------LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPV 131 (325)
T ss_pred EE--ECCcEEE-EEEeeeEEEEC------C-------EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCH
Confidence 99 8998887 99999999994 3 37889999999876322 122457999999987654 5
Q ss_pred hhhhhhccCC-CCceEEecCCCC--CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEE
Q 038219 196 PSQFSAAFNF-DRKFSICLSSST--TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSIL 272 (435)
Q Consensus 196 ~~ql~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~ 272 (435)
..+|.+++.+ +++||+||.+.. ..+|+|+|||+|+ .++.+++.|+|+.. +.+|.|++++|+
T Consensus 132 ~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~--~~~~g~l~~~~~~~--------------~~~w~v~l~~i~ 195 (325)
T cd05490 132 FDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDP--KYYTGDLHYVNVTR--------------KAYWQIHMDQVD 195 (325)
T ss_pred HHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCH--HHcCCceEEEEcCc--------------ceEEEEEeeEEE
Confidence 5688898888 478999998642 2479999999997 67889999999863 469999999999
Q ss_pred ECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeE
Q 038219 273 IGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEI 352 (435)
Q Consensus 273 v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i 352 (435)
|+++..... ....+||||||+++++|++++++|.+++.+. +.... .....|... ..+|+|
T Consensus 196 vg~~~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-----~~~~~-~~~~~C~~~-----~~~P~i 255 (325)
T cd05490 196 VGSGLTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV-----PLIQG-EYMIDCEKI-----PTLPVI 255 (325)
T ss_pred ECCeeeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc-----cccCC-CEEeccccc-----ccCCCE
Confidence 998643221 1357999999999999999999998887532 11111 223456543 268999
Q ss_pred EEEEcCCceEEEEcCCccEEEeCC--ceEEEE-EEeCCC--CCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 353 HLVLPGNNRVWKIYGANSMVRVGK--DAMCLA-FVDGGV--NPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 353 ~~~f~g~~~~~~ip~~~y~~~~~~--~~~C~~-~~~~~~--~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+|+|+| ++++|+|++|+++... ...|+. ++..+. .....||||++|||++|+|||++++|||||+
T Consensus 256 ~f~fgg--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 256 SFSLGG--KVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEECC--EEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 999977 8999999999987543 357984 554321 1245799999999999999999999999995
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8.3e-53 Score=411.36 Aligned_cols=301 Identities=17% Similarity=0.230 Sum_probs=236.6
Q ss_pred EEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceeecc
Q 038219 47 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPANS 126 (435)
Q Consensus 47 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~y~ 126 (435)
|+++|+||||||+++|+|||||+++||+|..| .+..|..+..|++. .++++....|.|.+.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C-----------~~~~C~~~~~y~~~------~SsT~~~~~~~~~i~-- 61 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYC-----------TSQACTKHNRFQPS------ESSTYVSNGEAFSIQ-- 61 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCC-----------CCcccCccceECCC------CCcccccCCcEEEEE--
Confidence 89999999999999999999999999998765 34467666666652 456677788999999
Q ss_pred cCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCC-CCCcceEEeeCCCCCc------hhhhh
Q 038219 127 ISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGL-ATGVKGMAGLGRTQVS------LPSQF 199 (435)
Q Consensus 127 y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~-~~~~~GIlGLg~~~~s------~~~ql 199 (435)
|++|++. |.+++|+|+++ + +.++++.|||+..+....+ ....+||||||++..+ +..+|
T Consensus 62 Yg~g~~~-G~~~~D~v~ig------~-------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l 127 (316)
T cd05486 62 YGTGSLT-GIIGIDQVTVE------G-------ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNM 127 (316)
T ss_pred eCCcEEE-EEeeecEEEEC------C-------EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHH
Confidence 8888887 99999999994 3 4788999999876532212 2467999999987654 56788
Q ss_pred hhccCCC-CceEEecCCCC--CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCE
Q 038219 200 SAAFNFD-RKFSICLSSST--TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGN 276 (435)
Q Consensus 200 ~~~~~i~-~~FS~~L~~~~--~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~ 276 (435)
.+++.++ ++||+||.+.. ...|+|+|||+|+ .++.|++.|+|++. ..+|.|.+++|+|+++
T Consensus 128 ~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~--~~~~g~l~~~pi~~--------------~~~w~v~l~~i~v~g~ 191 (316)
T cd05486 128 MAQNLVELPMFSVYMSRNPNSADGGELVFGGFDT--SRFSGQLNWVPVTV--------------QGYWQIQLDNIQVGGT 191 (316)
T ss_pred HhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCH--HHcccceEEEECCC--------------ceEEEEEeeEEEEecc
Confidence 9999884 67999998742 3479999999997 67889999999864 4799999999999998
Q ss_pred EeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEE
Q 038219 277 VVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVL 356 (435)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 356 (435)
.+.... ...+||||||+++++|++++++|.+.+.... ..+ .....|... ..+|+|+|+|
T Consensus 192 ~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~------~~~-~~~~~C~~~-----~~~p~i~f~f 250 (316)
T cd05486 192 VIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA------TDG-EYGVDCSTL-----SLMPSVTFTI 250 (316)
T ss_pred eEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc------cCC-cEEEecccc-----ccCCCEEEEE
Confidence 764321 2579999999999999999998877664221 111 112356533 3699999999
Q ss_pred cCCceEEEEcCCccEEEeC--CceEEE-EEEeCCC--CCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 357 PGNNRVWKIYGANSMVRVG--KDAMCL-AFVDGGV--NPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 357 ~g~~~~~~ip~~~y~~~~~--~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+| ++++|+|++|++... .+..|+ +++.... ...+.||||++|||++|+|||++++|||||+
T Consensus 251 ~g--~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 251 NG--IPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CC--EEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 77 899999999998752 346898 4554321 1245799999999999999999999999995
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.3e-52 Score=408.90 Aligned_cols=308 Identities=18% Similarity=0.249 Sum_probs=240.5
Q ss_pred eEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCC
Q 038219 37 LVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNN 116 (435)
Q Consensus 37 pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~ 116 (435)
||.+ ..+.+|+++|+||||+|++.|+|||||+++||+|..| .+..|..+..|+|. .+++|..
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C-----------~~~~C~~~~~y~~~------~Sst~~~ 63 (320)
T cd05488 2 PLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKC-----------GSIACFLHSKYDSS------ASSTYKA 63 (320)
T ss_pred cccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCC-----------CCcccCCcceECCC------CCcceee
Confidence 5554 3578999999999999999999999999999999765 44456655556652 4566777
Q ss_pred CCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCC-CCCCcceEEeeCCCCCch
Q 038219 117 HTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDG-LATGVKGMAGLGRTQVSL 195 (435)
Q Consensus 117 ~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~s~ 195 (435)
+.|.+.+. |++|++. |.+++|+++++ + +.++++.|||++...... .....+||||||++..+.
T Consensus 64 ~~~~~~~~--y~~g~~~-G~~~~D~v~ig------~-------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~ 127 (320)
T cd05488 64 NGTEFKIQ--YGSGSLE-GFVSQDTLSIG------D-------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISV 127 (320)
T ss_pred CCCEEEEE--ECCceEE-EEEEEeEEEEC------C-------EEECCEEEEEEecCCCcceeeeeeceEEecCCccccc
Confidence 88999999 8888887 99999999994 3 477899999997653211 124579999999987653
Q ss_pred ------hhhhhhccCC-CCceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEE
Q 038219 196 ------PSQFSAAFNF-DRKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEI 268 (435)
Q Consensus 196 ------~~ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l 268 (435)
..+|.+++.| +++||+||.+.....|.|+|||+|+ .++.+++.|+|++. ..+|.|.+
T Consensus 128 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~--~~~~g~l~~~p~~~--------------~~~w~v~l 191 (320)
T cd05488 128 NKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDE--SRFTGKITWLPVRR--------------KAYWEVEL 191 (320)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCH--HHcCCceEEEeCCc--------------CcEEEEEe
Confidence 3467888888 5789999998645689999999997 67889999999974 36899999
Q ss_pred eEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcc
Q 038219 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTT 348 (435)
Q Consensus 269 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 348 (435)
++|+|+++.+... +..++|||||++++||+++++++.+++.+... ... .....|... ..
T Consensus 192 ~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~-~~~~~C~~~-----~~ 250 (320)
T cd05488 192 EKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNG-QYTVDCSKV-----DS 250 (320)
T ss_pred CeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCC-cEEeecccc-----cc
Confidence 9999999876543 24699999999999999999998887743211 011 111245433 36
Q ss_pred cCeEEEEEcCCceEEEEcCCccEEEeCCceEEEEEEeC-CC--CCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 349 APEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDG-GV--NPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 349 ~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~C~~~~~~-~~--~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+|+|+|+|+| ++++||+++|++.. +..|+..+.. .. ...+.||||+.|||++|+|||++++|||||+
T Consensus 251 ~P~i~f~f~g--~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 251 LPDLTFNFDG--YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCEEEEECC--EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 8999999987 89999999999854 3479854432 21 1134799999999999999999999999995
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7.8e-52 Score=404.45 Aligned_cols=301 Identities=19% Similarity=0.287 Sum_probs=236.8
Q ss_pred eEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCC
Q 038219 37 LVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNN 116 (435)
Q Consensus 37 pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~ 116 (435)
||.+ ..+.+|+++|+||||||+++|+|||||+++||+|..|.. +..|..+..|++. .++++..
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~----------~~~C~~~~~y~~~------~SsT~~~ 64 (317)
T cd06098 2 ALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYKSS------KSSTYKK 64 (317)
T ss_pred cccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCC----------CccccccCcCCcc------cCCCccc
Confidence 4543 467899999999999999999999999999999987631 2356666666653 4556666
Q ss_pred CCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEeeCCCCCc-
Q 038219 117 HTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRTQVS- 194 (435)
Q Consensus 117 ~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s- 194 (435)
..+.+.+. |++|++. |.+++|+|+++ + ..++++.||+++.+... ......+||||||++..+
T Consensus 65 ~~~~~~i~--Yg~G~~~-G~~~~D~v~ig------~-------~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~ 128 (317)
T cd06098 65 NGTSASIQ--YGTGSIS-GFFSQDSVTVG------D-------LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISV 128 (317)
T ss_pred CCCEEEEE--cCCceEE-EEEEeeEEEEC------C-------EEECCEEEEEEEecCCccccccccceeccccccchhh
Confidence 77788888 8888887 99999999994 3 37889999998865321 222467999999987644
Q ss_pred -----hhhhhhhccCCC-CceEEecCCCC--CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEE
Q 038219 195 -----LPSQFSAAFNFD-RKFSICLSSST--TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFI 266 (435)
Q Consensus 195 -----~~~ql~~~~~i~-~~FS~~L~~~~--~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v 266 (435)
+..+|.+++.++ ++||+||.+.. ...|+|+|||+|+ .++.|++.|+|++. ..+|.|
T Consensus 129 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~--~~~~g~l~~~pv~~--------------~~~w~v 192 (317)
T cd06098 129 GKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDP--KHFKGEHTYVPVTR--------------KGYWQF 192 (317)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccCh--hhcccceEEEecCc--------------CcEEEE
Confidence 456788888884 68999998642 3579999999997 68889999999963 368999
Q ss_pred EEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCC
Q 038219 267 EIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGG 346 (435)
Q Consensus 267 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 346 (435)
.+++|+|+++.+..... ...+||||||+++++|+++++++. ....|+...
T Consensus 193 ~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~------------------~~~~C~~~~---- 242 (317)
T cd06098 193 EMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN------------------SAVDCNSLS---- 242 (317)
T ss_pred EeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh------------------ccCCccccc----
Confidence 99999999987654321 256999999999999998766542 123587543
Q ss_pred cccCeEEEEEcCCceEEEEcCCccEEEeCC--ceEEEE-EEeCCC--CCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 347 TTAPEIHLVLPGNNRVWKIYGANSMVRVGK--DAMCLA-FVDGGV--NPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 347 ~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~--~~~C~~-~~~~~~--~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
.+|+|+|+|+| ++++|+|++|+++..+ ...|+. ++..+. ..+..||||++|||++|+|||++++|||||+
T Consensus 243 -~~P~i~f~f~g--~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 243 -SMPNVSFTIGG--KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred -cCCcEEEEECC--EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 68999999976 8999999999987643 357984 554321 1235799999999999999999999999995
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.8e-51 Score=402.36 Aligned_cols=304 Identities=16% Similarity=0.218 Sum_probs=241.2
Q ss_pred CceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCcccee
Q 038219 44 TLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFP 123 (435)
Q Consensus 44 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 123 (435)
+..|+++|.||||||++.|+|||||+++||+|..| ....|.....|++ ..++++....|.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C-----------~~~~C~~~~~f~~------~~SsT~~~~~~~~~~ 63 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLC-----------QSQACTNHTKFNP------SQSSTYSTNGETFSL 63 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCC-----------CCccccccCCCCc------ccCCCceECCcEEEE
Confidence 46899999999999999999999999999999765 3445766666665 245667778899999
Q ss_pred ecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCC-CCCCcceEEeeCCCC------Cchh
Q 038219 124 ANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDG-LATGVKGMAGLGRTQ------VSLP 196 (435)
Q Consensus 124 ~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~------~s~~ 196 (435)
. |++|++. |.+++|+|+++ + +.++++.|||++...... .....+||||||++. .+++
T Consensus 64 ~--Yg~Gs~~-G~~~~D~i~~g------~-------~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~ 127 (318)
T cd05477 64 Q--YGSGSLT-GIFGYDTVTVQ------G-------IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVM 127 (318)
T ss_pred E--ECCcEEE-EEEEeeEEEEC------C-------EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHH
Confidence 9 8888887 99999999994 3 478899999998753221 224579999999853 5688
Q ss_pred hhhhhccCC-CCceEEecCCC-CCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEEC
Q 038219 197 SQFSAAFNF-DRKFSICLSSS-TTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIG 274 (435)
Q Consensus 197 ~ql~~~~~i-~~~FS~~L~~~-~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~ 274 (435)
.||.+++.| +++||+||.+. ....|.|+|||+|+ .++.+++.|+|+.. ..+|.|.+++|+|+
T Consensus 128 ~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~--~~~~g~l~~~pv~~--------------~~~w~v~l~~i~v~ 191 (318)
T cd05477 128 QGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDN--NLYTGQIYWTPVTS--------------ETYWQIGIQGFQIN 191 (318)
T ss_pred HHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCH--HHcCCceEEEecCC--------------ceEEEEEeeEEEEC
Confidence 899999988 47899999875 23569999999997 67889999999864 47999999999999
Q ss_pred CEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEE
Q 038219 275 GNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHL 354 (435)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 354 (435)
++.+..... ...+||||||+++++|+++|++|++++..... .. .+|..+|.....+|+|+|
T Consensus 192 g~~~~~~~~--------~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~------~~-----~~~~~~C~~~~~~p~l~~ 252 (318)
T cd05477 192 GQATGWCSQ--------GCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD------QY-----GQYVVNCNNIQNLPTLTF 252 (318)
T ss_pred CEEecccCC--------CceeeECCCCccEECCHHHHHHHHHHhCCccc------cC-----CCEEEeCCccccCCcEEE
Confidence 987653211 25699999999999999999999888854322 11 133333333336899999
Q ss_pred EEcCCceEEEEcCCccEEEeCCceEEE-EEEeCC---CCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 355 VLPGNNRVWKIYGANSMVRVGKDAMCL-AFVDGG---VNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 355 ~f~g~~~~~~ip~~~y~~~~~~~~~C~-~~~~~~---~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+|+| +++.||+++|+... ...|+ ++.+.. ......||||+.|||++|+|||++++|||||+
T Consensus 253 ~f~g--~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 253 TING--VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred EECC--EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 9987 89999999999864 35786 665431 11234799999999999999999999999996
No 12
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.4e-51 Score=404.12 Aligned_cols=295 Identities=20% Similarity=0.261 Sum_probs=227.6
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCC-------------CCCCcccccCCcccccccccCCCcccCCCCCC
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGY-------------VSTSYKPARCGSAQCKLARSKSCIDEYSCSPG 111 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~-------------~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~ 111 (435)
++|+++|+||||+|++.|+|||||+++||+|.+|. +|+|++.+.|.+..|.. .
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--------------~ 67 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--------------C 67 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--------------c
Confidence 58999999999999999999999999999988762 68888889999888842 1
Q ss_pred CCCCCCCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCC
Q 038219 112 PGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRT 191 (435)
Q Consensus 112 ~~c~~~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~ 191 (435)
..|.++.|.|.+. |++|+.+.|.+++|+|+|++.. .+.......++.|||+..+.........+||||||+.
T Consensus 68 ~~~~~~~~~~~i~--Y~~gs~~~G~~~~D~v~lg~~~------~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~ 139 (326)
T cd06096 68 LSCLNNKCEYSIS--YSEGSSISGFYFSDFVSFESYL------NSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLT 139 (326)
T ss_pred CcCCCCcCcEEEE--ECCCCceeeEEEEEEEEeccCC------CCccccccccEEeccCccccCcccccccceEEEccCC
Confidence 2356778999999 8888754499999999995421 0000001125789999887433333568999999997
Q ss_pred CCc----hhhhhhhccCC---CCceEEecCCCCCCCceEEEcCCCCCCcCCC----------CCceEeeCccCCCCCCCc
Q 038219 192 QVS----LPSQFSAAFNF---DRKFSICLSSSTTSNGAVFFGDVPFPNIDVS----------KSLIYTPLILNPVHNEGL 254 (435)
Q Consensus 192 ~~s----~~~ql~~~~~i---~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~----------g~~~~~Pl~~~~~~~~~~ 254 (435)
..+ ...+|.+++.+ .++||+||.+. .|+|+|||+|+ .++. +++.|+|+..
T Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~--~~~~~~~~~~~~~~~~~~~~p~~~-------- 206 (326)
T cd06096 140 KNNGLPTPIILLFTKRPKLKKDKIFSICLSED---GGELTIGGYDK--DYTVRNSSIGNNKVSKIVWTPITR-------- 206 (326)
T ss_pred cccccCchhHHHHHhcccccCCceEEEEEcCC---CeEEEECccCh--hhhcccccccccccCCceEEeccC--------
Confidence 642 22234444443 27899999974 79999999997 4554 7899999874
Q ss_pred ccCCCCCcceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 038219 255 AFKGDPSTDYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAP 334 (435)
Q Consensus 255 ~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~ 334 (435)
..+|.|.+++|+|+++...... ..+..+||||||++++||+++|++|.+++
T Consensus 207 ------~~~y~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~---------------- 257 (326)
T cd06096 207 ------KYYYYVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF---------------- 257 (326)
T ss_pred ------CceEEEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc----------------
Confidence 3689999999999987511100 12467999999999999999998886554
Q ss_pred cccceeccCCCCcccCeEEEEEcCCceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCE
Q 038219 335 FGACFNSSFIGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSR 414 (435)
Q Consensus 335 ~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~r 414 (435)
|+|+|.|++ +++++++|++|++...+..+|+++.... +.+|||++|||++|+|||++++|
T Consensus 258 ---------------P~i~~~f~~-g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~r 317 (326)
T cd06096 258 ---------------PTITIIFEN-NLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNR 317 (326)
T ss_pred ---------------CcEEEEEcC-CcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCE
Confidence 789999985 4899999999999876555666654432 47899999999999999999999
Q ss_pred EEEeecCCcccCCcc
Q 038219 415 LGFSSSLLSWQTTCS 429 (435)
Q Consensus 415 IGfa~~~~~~~~~C~ 429 (435)
||||+ .+|.
T Consensus 318 iGfa~------~~C~ 326 (326)
T cd06096 318 IGFVE------SNCP 326 (326)
T ss_pred EeeEc------CCCC
Confidence 99996 7884
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.3e-51 Score=401.15 Aligned_cols=312 Identities=19% Similarity=0.264 Sum_probs=241.4
Q ss_pred eEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCC
Q 038219 37 LVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNN 116 (435)
Q Consensus 37 pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~ 116 (435)
||.+ ..+.+|+++|+||||+|++.|+|||||+++||+|..|.. | +..|..+..|+| ..+++|..
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~------~~Sst~~~ 66 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSW--------T-NIACLLHNKYDS------TKSSTYKK 66 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCC--------C-CccccCCCeECC------cCCCCeEE
Confidence 4443 467899999999999999999999999999999987721 1 234655555555 24566777
Q ss_pred CCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEeeCCCCCc-
Q 038219 117 HTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRTQVS- 194 (435)
Q Consensus 117 ~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s- 194 (435)
..|.|.+. |++|++. |.+++|+++++ + +.++++.|||+..+... ......+||||||+...+
T Consensus 67 ~~~~~~i~--Y~~g~~~-G~~~~D~v~ig------~-------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~ 130 (329)
T cd05485 67 NGTEFAIQ--YGSGSLS-GFLSTDTVSVG------G-------VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISV 130 (329)
T ss_pred CCeEEEEE--ECCceEE-EEEecCcEEEC------C-------EEECCEEEEEEEecCCccccccccceEEEcCCccccc
Confidence 88999999 8888877 99999999994 3 37789999999765321 122457999999997655
Q ss_pred -----hhhhhhhccCC-CCceEEecCCCC--CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEE
Q 038219 195 -----LPSQFSAAFNF-DRKFSICLSSST--TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFI 266 (435)
Q Consensus 195 -----~~~ql~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v 266 (435)
+..||.+++.| +++||+||.+.. ...|+|+|||+|+ .++.|++.|+|+.. +.+|.|
T Consensus 131 ~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~--~~~~g~l~~~p~~~--------------~~~~~v 194 (329)
T cd05485 131 DGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP--KHYTGNFTYLPVTR--------------KGYWQF 194 (329)
T ss_pred cCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH--HHcccceEEEEcCC--------------ceEEEE
Confidence 45788999988 478999998753 2479999999997 67889999999963 479999
Q ss_pred EEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCC
Q 038219 267 EIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGG 346 (435)
Q Consensus 267 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 346 (435)
.+++|+++++.+.. .+..+||||||+++++|+++|++|.+++.... + ........|...
T Consensus 195 ~~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---~---~~~~~~~~C~~~----- 253 (329)
T cd05485 195 KMDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---I---IGGEYMVNCSAI----- 253 (329)
T ss_pred EeeEEEECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---c---cCCcEEEecccc-----
Confidence 99999999876531 13569999999999999999999888775321 1 111112345432
Q ss_pred cccCeEEEEEcCCceEEEEcCCccEEEeCC--ceEEE-EEEeCC--CCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 347 TTAPEIHLVLPGNNRVWKIYGANSMVRVGK--DAMCL-AFVDGG--VNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 347 ~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~--~~~C~-~~~~~~--~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
..+|+|+|+|++ +++.||+++|+++..+ ...|+ +++... ......||||+.|||++|+|||++++|||||+
T Consensus 254 ~~~p~i~f~fgg--~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 254 PSLPDITFVLGG--KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ccCCcEEEEECC--EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 368999999987 8999999999987653 45798 466432 11235799999999999999999999999984
No 14
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.3e-51 Score=387.50 Aligned_cols=262 Identities=33% Similarity=0.613 Sum_probs=216.8
Q ss_pred eEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceeec
Q 038219 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPAN 125 (435)
Q Consensus 46 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~y 125 (435)
+|+++|+||||||++.|+|||||+++||+| | .|.+.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--~-----------------------------------------~~~~~- 36 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC--C-----------------------------------------SYEYS- 36 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--C-----------------------------------------ceEeE-
Confidence 599999999999999999999999999986 1 36777
Q ss_pred ccCCc-cceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCCCchhhhhhhccC
Q 038219 126 SISRE-STNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAAFN 204 (435)
Q Consensus 126 ~y~~g-~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~ 204 (435)
|+++ .+. |.+++|+|+|++.+ ..++++.|||++.... ......+||||||+...|++.||..++
T Consensus 37 -Y~dg~~~~-G~~~~D~v~~g~~~-----------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~- 101 (265)
T cd05476 37 -YGDGSSTS-GVLATETFTFGDSS-----------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG- 101 (265)
T ss_pred -eCCCceee-eeEEEEEEEecCCC-----------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-
Confidence 7754 555 99999999995320 2578999999998743 334578999999999999999998876
Q ss_pred CCCceEEecCCC--CCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCEEeecCc
Q 038219 205 FDRKFSICLSSS--TTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGNVVPLNT 282 (435)
Q Consensus 205 i~~~FS~~L~~~--~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~~~ 282 (435)
++||+||.+. ....|+|+||++|+ . +.+++.|+|++.++. ...+|.|.+++|+|+++.+.++.
T Consensus 102 --~~Fs~~l~~~~~~~~~G~l~fGg~d~--~-~~~~l~~~p~~~~~~----------~~~~~~v~l~~i~v~~~~~~~~~ 166 (265)
T cd05476 102 --NKFSYCLVPHDDTGGSSPLILGDAAD--L-GGSGVVYTPLVKNPA----------NPTYYYVNLEGISVGGKRLPIPP 166 (265)
T ss_pred --CeeEEEccCCCCCCCCCeEEECCccc--c-cCCCceEeecccCCC----------CCCceEeeeEEEEECCEEecCCc
Confidence 7899999975 35689999999997 4 789999999987531 25799999999999999887544
Q ss_pred ccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEEcCCceE
Q 038219 283 SLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVLPGNNRV 362 (435)
Q Consensus 283 ~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~ 362 (435)
............+||||||++++||+++| |+|+|+|++ +++
T Consensus 167 ~~~~~~~~~~~~ai~DTGTs~~~lp~~~~--------------------------------------P~i~~~f~~-~~~ 207 (265)
T cd05476 167 SVFAIDSDGSGGTIIDSGTTLTYLPDPAY--------------------------------------PDLTLHFDG-GAD 207 (265)
T ss_pred hhcccccCCCCcEEEeCCCcceEcCcccc--------------------------------------CCEEEEECC-CCE
Confidence 33222223346899999999999998665 789999995 489
Q ss_pred EEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEeecCCcccCCc
Q 038219 363 WKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSSSLLSWQTTC 428 (435)
Q Consensus 363 ~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~~~~~~~C 428 (435)
|.+++++|++...++..|+++..... .+.||||++|||++|+|||++++|||||+ .+|
T Consensus 208 ~~i~~~~y~~~~~~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa~------~~C 265 (265)
T cd05476 208 LELPPENYFVDVGEGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFAP------ADC 265 (265)
T ss_pred EEeCcccEEEECCCCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeeec------CCC
Confidence 99999999997666789998887632 45799999999999999999999999996 777
No 15
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.2e-51 Score=410.82 Aligned_cols=312 Identities=15% Similarity=0.238 Sum_probs=241.6
Q ss_pred cceEEeEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCC
Q 038219 32 KALALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPG 111 (435)
Q Consensus 32 ~~~~~pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~ 111 (435)
....+||.. ..+.+|+++|+||||||++.|+|||||+++||+|..| .+..|..+..|++. .|
T Consensus 126 ~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C-----------~~~~C~~~~~yd~s------~S 187 (453)
T PTZ00147 126 EFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKC-----------TTEGCETKNLYDSS------KS 187 (453)
T ss_pred CCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCC-----------CcccccCCCccCCc------cC
Confidence 345677764 4678999999999999999999999999999999765 34457766777763 46
Q ss_pred CCCCCCCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC---CCCCCcceEEee
Q 038219 112 PGCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD---GLATGVKGMAGL 188 (435)
Q Consensus 112 ~~c~~~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~---~~~~~~~GIlGL 188 (435)
++|....|.|++. |++|++. |.+++|+|+++ + +.++ ..|+|+...... ......||||||
T Consensus 188 sT~~~~~~~f~i~--Yg~Gsvs-G~~~~DtVtiG------~-------~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGL 250 (453)
T PTZ00147 188 KTYEKDGTKVEMN--YVSGTVS-GFFSKDLVTIG------N-------LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGL 250 (453)
T ss_pred cceEECCCEEEEE--eCCCCEE-EEEEEEEEEEC------C-------EEEE-EEEEEEEeccCcccccccccccceecc
Confidence 6677788899999 8888888 99999999994 3 3566 578887654210 112357999999
Q ss_pred CCCCCc------hhhhhhhccCCC-CceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCC
Q 038219 189 GRTQVS------LPSQFSAAFNFD-RKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPS 261 (435)
Q Consensus 189 g~~~~s------~~~ql~~~~~i~-~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~ 261 (435)
|++..+ ++.+|.+++.|+ ++||+||++.....|+|+|||+|+ .++.|++.|+|+.. .
T Consensus 251 G~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~--~ky~G~l~y~pl~~--------------~ 314 (453)
T PTZ00147 251 GWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEE--RFYEGPLTYEKLNH--------------D 314 (453)
T ss_pred cCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcCh--hhcCCceEEEEcCC--------------C
Confidence 997654 566899999994 679999987655689999999997 67889999999953 4
Q ss_pred cceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceec
Q 038219 262 TDYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNS 341 (435)
Q Consensus 262 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~ 341 (435)
.+|.|.++ +.+++... . ...+||||||+++++|+++++++.+++.... .+.. + .....|+.
T Consensus 315 ~~W~V~l~-~~vg~~~~--~----------~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~---~~~~-~-~y~~~C~~- 375 (453)
T PTZ00147 315 LYWQVDLD-VHFGNVSS--E----------KANVIVDSGTSVITVPTEFLNKFVESLDVFK---VPFL-P-LYVTTCNN- 375 (453)
T ss_pred ceEEEEEE-EEECCEec--C----------ceeEEECCCCchhcCCHHHHHHHHHHhCCee---cCCC-C-eEEEeCCC-
Confidence 68999998 46765321 1 3579999999999999999999988874321 1111 1 12346764
Q ss_pred cCCCCcccCeEEEEEcCCceEEEEcCCccEEEeCC--ceEEE-EEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEe
Q 038219 342 SFIGGTTAPEIHLVLPGNNRVWKIYGANSMVRVGK--DAMCL-AFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFS 418 (435)
Q Consensus 342 ~~~~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa 418 (435)
..+|+++|.|+| .+++|||++|+....+ ...|+ +++..+.. .+.||||++|||++|+|||++++|||||
T Consensus 376 -----~~lP~~~f~f~g--~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~FLr~~YtVFD~~n~rIGfA 447 (453)
T PTZ00147 376 -----TKLPTLEFRSPN--KVYTLEPEYYLQPIEDIGSALCMLNIIPIDLE-KNTFILGDPFMRKYFTVFDYDNHTVGFA 447 (453)
T ss_pred -----CCCCeEEEEECC--EEEEECHHHheeccccCCCcEEEEEEEECCCC-CCCEEECHHHhccEEEEEECCCCEEEEE
Confidence 168999999987 8999999999976432 35798 46654322 3579999999999999999999999999
Q ss_pred ecC
Q 038219 419 SSL 421 (435)
Q Consensus 419 ~~~ 421 (435)
++.
T Consensus 448 ~a~ 450 (453)
T PTZ00147 448 LAK 450 (453)
T ss_pred Eec
Confidence 854
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.2e-50 Score=397.68 Aligned_cols=307 Identities=17% Similarity=0.245 Sum_probs=239.8
Q ss_pred CCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccc
Q 038219 42 SSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSR 121 (435)
Q Consensus 42 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~ 121 (435)
..+..|+++|+||||+|+++|+|||||+++||+|..|.. | ...|..+..|+|. .+++|....|.|
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~--------~-~~~c~~~~~y~~~------~SsT~~~~~~~~ 68 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSP--------L-YTACVTHNLYDAS------DSSTYKENGTEF 68 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcC--------c-chhhcccCcCCCC------CCeeeeECCEEE
Confidence 457899999999999999999999999999999877621 1 1356666667763 456677788999
Q ss_pred eeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcC-CCCCCCcceEEeeCCCCC------c
Q 038219 122 FPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLL-DGLATGVKGMAGLGRTQV------S 194 (435)
Q Consensus 122 ~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~-~~~~~~~~GIlGLg~~~~------s 194 (435)
++. |++|++. |.+++|+|++++ +.+ ++.||++..... .......+||||||++.. +
T Consensus 69 ~~~--Yg~g~~~-G~~~~D~v~~g~-------------~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 131 (326)
T cd05487 69 TIH--YASGTVK-GFLSQDIVTVGG-------------IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTP 131 (326)
T ss_pred EEE--eCCceEE-EEEeeeEEEECC-------------EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCC
Confidence 999 8888887 999999999952 244 478999876421 112245799999998654 3
Q ss_pred hhhhhhhccCC-CCceEEecCCCC--CCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEE
Q 038219 195 LPSQFSAAFNF-DRKFSICLSSST--TSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSI 271 (435)
Q Consensus 195 ~~~ql~~~~~i-~~~FS~~L~~~~--~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i 271 (435)
+..+|.+++.| +++||+||.+.. ...|+|+|||+|+ .++.|++.|+|+.. ..+|.|.+++|
T Consensus 132 ~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~--~~y~g~l~~~~~~~--------------~~~w~v~l~~i 195 (326)
T cd05487 132 VFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDP--QHYQGDFHYINTSK--------------TGFWQIQMKGV 195 (326)
T ss_pred HHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcCh--hhccCceEEEECCc--------------CceEEEEecEE
Confidence 56778899988 478999998752 3579999999997 67889999999863 46899999999
Q ss_pred EECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCe
Q 038219 272 LIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPE 351 (435)
Q Consensus 272 ~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 351 (435)
+|+++.+.... +..+||||||+++++|+++|+++++++..... .......|... ..+|.
T Consensus 196 ~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-------~~~y~~~C~~~-----~~~P~ 254 (326)
T cd05487 196 SVGSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER-------LGDYVVKCNEV-----PTLPD 254 (326)
T ss_pred EECCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc-------CCCEEEecccc-----CCCCC
Confidence 99998764321 25699999999999999999999888753311 11112346543 36899
Q ss_pred EEEEEcCCceEEEEcCCccEEEeCC--ceEEE-EEEeCCC--CCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 352 IHLVLPGNNRVWKIYGANSMVRVGK--DAMCL-AFVDGGV--NPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 352 i~~~f~g~~~~~~ip~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
|+|+|++ .+++||+++|+++..+ +..|+ ++...+. ..++.||||+.|||++|+|||++++|||||+
T Consensus 255 i~f~fgg--~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~ 325 (326)
T cd05487 255 ISFHLGG--KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFAL 325 (326)
T ss_pred EEEEECC--EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeee
Confidence 9999976 8999999999997643 56787 5654321 1235799999999999999999999999996
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.6e-50 Score=407.00 Aligned_cols=311 Identities=14% Similarity=0.235 Sum_probs=238.9
Q ss_pred ceEEeEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCC
Q 038219 33 ALALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGP 112 (435)
Q Consensus 33 ~~~~pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~ 112 (435)
.-.+||.. ..+.+|+++|+||||||+++|+|||||+++||+|..| .+..|..+..|+|. .++
T Consensus 126 ~~~~~l~d-~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C-----------~~~~C~~~~~yd~s------~Ss 187 (450)
T PTZ00013 126 NDVIELDD-VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKC-----------DSIGCSIKNLYDSS------KSK 187 (450)
T ss_pred CCceeeec-cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccC-----------CccccccCCCccCc------cCc
Confidence 44667764 4578999999999999999999999999999999765 34457766677763 456
Q ss_pred CCCCCCccceeecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcC-C--CCCCCcceEEeeC
Q 038219 113 GCNNHTCSRFPANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLL-D--GLATGVKGMAGLG 189 (435)
Q Consensus 113 ~c~~~~~~~~~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~-~--~~~~~~~GIlGLg 189 (435)
++....|.+.+. |++|++. |.+++|+|+++ + +.++ ..|+++..... . ......+||||||
T Consensus 188 T~~~~~~~~~i~--YG~Gsv~-G~~~~Dtv~iG------~-------~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg 250 (450)
T PTZ00013 188 SYEKDGTKVDIT--YGSGTVK-GFFSKDLVTLG------H-------LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLG 250 (450)
T ss_pred ccccCCcEEEEE--ECCceEE-EEEEEEEEEEC------C-------EEEc-cEEEEEEeccccccceecccccceeccc
Confidence 677778999999 8888887 99999999994 3 3565 57888765421 1 1123579999999
Q ss_pred CCCC------chhhhhhhccCCC-CceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCc
Q 038219 190 RTQV------SLPSQFSAAFNFD-RKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPST 262 (435)
Q Consensus 190 ~~~~------s~~~ql~~~~~i~-~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~ 262 (435)
++.. +++.+|.+++.|+ ++||+||++.....|.|+|||+|+ .++.|++.|+|+.. ..
T Consensus 251 ~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~--~~y~G~L~y~pv~~--------------~~ 314 (450)
T PTZ00013 251 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEE--KFYEGNITYEKLNH--------------DL 314 (450)
T ss_pred CCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCc--cccccceEEEEcCc--------------Cc
Confidence 9765 3667899999985 679999987645689999999997 67889999999963 46
Q ss_pred ceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceecc
Q 038219 263 DYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSS 342 (435)
Q Consensus 263 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~ 342 (435)
+|.|.++ +.++..... +..+||||||+++++|+++++++.+++.... .+. .+ .....|+.
T Consensus 315 yW~I~l~-v~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~---~~~-~~-~y~~~C~~-- 374 (450)
T PTZ00013 315 YWQIDLD-VHFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK---VPF-LP-FYVTTCDN-- 374 (450)
T ss_pred eEEEEEE-EEECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee---cCC-CC-eEEeecCC--
Confidence 8999998 666543221 3569999999999999999988888774321 111 11 12345753
Q ss_pred CCCCcccCeEEEEEcCCceEEEEcCCccEEEeC--CceEEE-EEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 343 FIGGTTAPEIHLVLPGNNRVWKIYGANSMVRVG--KDAMCL-AFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 343 ~~~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~--~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
..+|+|+|+|+| .+++|+|++|+.... ++..|+ ++++.+. ..+.||||++|||++|+|||++++|||||+
T Consensus 375 ----~~lP~i~F~~~g--~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~ 447 (450)
T PTZ00013 375 ----KEMPTLEFKSAN--NTYTLEPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAI 447 (450)
T ss_pred ----CCCCeEEEEECC--EEEEECHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEE
Confidence 268999999987 899999999997532 346898 5554332 235799999999999999999999999998
Q ss_pred cC
Q 038219 420 SL 421 (435)
Q Consensus 420 ~~ 421 (435)
+.
T Consensus 448 a~ 449 (450)
T PTZ00013 448 AK 449 (450)
T ss_pred eC
Confidence 54
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=2.1e-50 Score=386.24 Aligned_cols=263 Identities=25% Similarity=0.430 Sum_probs=212.7
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecCC-CCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCcccee
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCD-QGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFP 123 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~-~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 123 (435)
++|+++|.||||||++.|+|||||+++||+|. +| . .| .|.|++
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c-----------~----------------------~c---~c~~~i 44 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPC-----------T----------------------GC---QCDYEI 44 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCC-----------C----------------------CC---cCccEe
Confidence 47999999999999999999999999999984 33 1 11 467999
Q ss_pred ecccCC-ccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCC--CCCCcceEEeeCCCCCchhhhhh
Q 038219 124 ANSISR-ESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDG--LATGVKGMAGLGRTQVSLPSQFS 200 (435)
Q Consensus 124 ~y~y~~-g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~ 200 (435)
. |++ +++. |.+++|+|+|+..+ |+ ..++++.|||+....... .....+||||||++..++++||.
T Consensus 45 ~--Ygd~~~~~-G~~~~D~v~~~~~~--~~-------~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~ 112 (273)
T cd05475 45 E--YADGGSSM-GVLVTDIFSLKLTN--GS-------RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLA 112 (273)
T ss_pred E--eCCCCceE-EEEEEEEEEEeecC--CC-------cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHH
Confidence 9 775 4555 99999999997543 33 366789999997653221 22468999999999999999999
Q ss_pred hccCCCCceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCEEeec
Q 038219 201 AAFNFDRKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGNVVPL 280 (435)
Q Consensus 201 ~~~~i~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~~~~ 280 (435)
+++.++++||+||++. .+|.|+||+. .++.+++.|+|+..++ ...+|.|++.+|+|+++.+..
T Consensus 113 ~~~~i~~~Fs~~l~~~--~~g~l~~G~~----~~~~g~i~ytpl~~~~-----------~~~~y~v~l~~i~vg~~~~~~ 175 (273)
T cd05475 113 SQGIIKNVIGHCLSSN--GGGFLFFGDD----LVPSSGVTWTPMRRES-----------QKKHYSPGPASLLFNGQPTGG 175 (273)
T ss_pred hcCCcCceEEEEccCC--CCeEEEECCC----CCCCCCeeecccccCC-----------CCCeEEEeEeEEEECCEECcC
Confidence 9988878899999873 4799999953 3456889999998653 147999999999999984321
Q ss_pred CcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEEcCC-
Q 038219 281 NTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVLPGN- 359 (435)
Q Consensus 281 ~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~- 359 (435)
+...+||||||++++||+++| +|+|+|.|++.
T Consensus 176 ----------~~~~~ivDTGTt~t~lp~~~y-------------------------------------~p~i~~~f~~~~ 208 (273)
T cd05475 176 ----------KGLEVVFDSGSSYTYFNAQAY-------------------------------------FKPLTLKFGKGW 208 (273)
T ss_pred ----------CCceEEEECCCceEEcCCccc-------------------------------------cccEEEEECCCC
Confidence 135799999999999998655 57899999872
Q ss_pred -ceEEEEcCCccEEEeCCceEEEEEEeCCCC-CCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 360 -NRVWKIYGANSMVRVGKDAMCLAFVDGGVN-PRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 360 -~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+++++||+++|++...++..|++++..... ..+.||||+.|||++|+|||++++|||||+
T Consensus 209 ~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~ 270 (273)
T cd05475 209 RTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVR 270 (273)
T ss_pred ceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCccc
Confidence 279999999999876666789988765431 235799999999999999999999999996
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8.3e-50 Score=397.46 Aligned_cols=321 Identities=19% Similarity=0.214 Sum_probs=235.2
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceee
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPA 124 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 124 (435)
..|+++|.||||+|++.|+|||||+++||+|..|. ..+..|++ ..++++....|.|++.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~---------------~~~~~f~~------~~SsT~~~~~~~~~i~ 60 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP---------------FIHTYFHR------ELSSTYRDLGKGVTVP 60 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc---------------cccccCCc------hhCcCcccCCceEEEE
Confidence 37999999999999999999999999999997651 11223444 2456677788999999
Q ss_pred cccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCC-CCcceEEeeCCCCC--------ch
Q 038219 125 NSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLA-TGVKGMAGLGRTQV--------SL 195 (435)
Q Consensus 125 y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~-~~~~GIlGLg~~~~--------s~ 195 (435)
|++|++. |.+++|+|+|++.. . ..+ .+.|++.......... ...+||||||++.+ ++
T Consensus 61 --Yg~Gs~~-G~~~~D~v~ig~~~--------~--~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~ 126 (364)
T cd05473 61 --YTQGSWE-GELGTDLVSIPKGP--------N--VTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPF 126 (364)
T ss_pred --ECcceEE-EEEEEEEEEECCCC--------c--cce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCH
Confidence 8999987 99999999995210 0 122 1345555443211111 25799999998765 35
Q ss_pred hhhhhhccCCCCceEEecCC---------CCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEE
Q 038219 196 PSQFSAAFNFDRKFSICLSS---------STTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFI 266 (435)
Q Consensus 196 ~~ql~~~~~i~~~FS~~L~~---------~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v 266 (435)
..+|.+|+.++++||++|.. .....|+|+|||+|+ .++.|++.|+|++. ..+|.|
T Consensus 127 ~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~--~~~~g~l~~~p~~~--------------~~~~~v 190 (364)
T cd05473 127 FDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDP--SLYKGDIWYTPIRE--------------EWYYEV 190 (364)
T ss_pred HHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCH--hhcCCCceEEecCc--------------ceeEEE
Confidence 56888888877789997742 112479999999997 67889999999974 368999
Q ss_pred EEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCC---CCCcccceeccC
Q 038219 267 EIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKP---IAPFGACFNSSF 343 (435)
Q Consensus 267 ~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~---~~~~~~C~~~~~ 343 (435)
.+++|+|+++.+..+...+. ...+||||||++++||+++|++|.+++.++.. ...... ......|+....
T Consensus 191 ~l~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~C~~~~~ 263 (364)
T cd05473 191 IILKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL--IEDFPDGFWLGSQLACWQKGT 263 (364)
T ss_pred EEEEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhcc--cccCCccccCcceeecccccC
Confidence 99999999988765432221 24699999999999999999999999988753 111111 011246876543
Q ss_pred CCCcccCeEEEEEcCC----ceEEEEcCCccEEEeC---CceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEE
Q 038219 344 IGGTTAPEIHLVLPGN----NRVWKIYGANSMVRVG---KDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLG 416 (435)
Q Consensus 344 ~~~~~~P~i~~~f~g~----~~~~~ip~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIG 416 (435)
.....+|+|+|+|+|. .++++|||++|+.... .+..|+++..... .+.||||+.|||++|+|||++++|||
T Consensus 264 ~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIG 341 (364)
T cd05473 264 TPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVG 341 (364)
T ss_pred chHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEe
Confidence 2223699999999862 3578999999997643 2467986433221 24699999999999999999999999
Q ss_pred EeecCCcccCCccCc
Q 038219 417 FSSSLLSWQTTCSKL 431 (435)
Q Consensus 417 fa~~~~~~~~~C~~~ 431 (435)
||+ .+|.+.
T Consensus 342 fa~------~~C~~~ 350 (364)
T cd05473 342 FAV------STCAEH 350 (364)
T ss_pred eEe------cccccc
Confidence 997 778764
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.1e-47 Score=369.80 Aligned_cols=276 Identities=18% Similarity=0.269 Sum_probs=222.7
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceee
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPA 124 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 124 (435)
..|+++|.||||+|++.|+|||||+++||+ .|++.
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------------------~~~~~ 35 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------------------DFSIS 35 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------eeEEE
Confidence 379999999999999999999999999996 16677
Q ss_pred cccCC-ccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCCC----------
Q 038219 125 NSISR-ESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQV---------- 193 (435)
Q Consensus 125 y~y~~-g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~---------- 193 (435)
|++ +++. |.+++|+|++++ ..++++.|||++.. ...+||||||+...
T Consensus 36 --Y~~g~~~~-G~~~~D~v~~g~-------------~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~ 93 (295)
T cd05474 36 --YGDGTSAS-GTWGTDTVSIGG-------------ATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTY 93 (295)
T ss_pred --eccCCcEE-EEEEEEEEEECC-------------eEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcC
Confidence 777 4566 999999999952 36789999999874 24699999999775
Q ss_pred -chhhhhhhccCCC-CceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEE
Q 038219 194 -SLPSQFSAAFNFD-RKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSI 271 (435)
Q Consensus 194 -s~~~ql~~~~~i~-~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i 271 (435)
+++.||.+++.|+ +.||+||.+.....|.|+|||+|+ .++.+++.|+|++.+... ....+|.|.+++|
T Consensus 94 ~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~--~~~~g~~~~~p~~~~~~~--------~~~~~~~v~l~~i 163 (295)
T cd05474 94 PNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDT--AKYSGDLVTLPIVNDNGG--------SEPSELSVTLSSI 163 (295)
T ss_pred CCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeecc--ceeeceeEEEeCcCcCCC--------CCceEEEEEEEEE
Confidence 6889999999884 779999998655689999999997 678899999999865310 0237999999999
Q ss_pred EECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCe
Q 038219 272 LIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPE 351 (435)
Q Consensus 272 ~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~ 351 (435)
+++++.+..+.. .+...+||||||++++||+++|++|.+++.+... . ........|+... . |.
T Consensus 164 ~v~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~----~-~~~~~~~~C~~~~-----~-p~ 226 (295)
T cd05474 164 SVNGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD----S-DEGLYVVDCDAKD-----D-GS 226 (295)
T ss_pred EEEcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc----C-CCcEEEEeCCCCC-----C-CE
Confidence 999987643211 2246899999999999999999999999865533 1 1112234565532 4 99
Q ss_pred EEEEEcCCceEEEEcCCccEEEeC----CceEEE-EEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 352 IHLVLPGNNRVWKIYGANSMVRVG----KDAMCL-AFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 352 i~~~f~g~~~~~~ip~~~y~~~~~----~~~~C~-~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
|+|+|+| ++++||+++|++... .+..|+ ++..... +.||||++|||++|+|||++++|||||+
T Consensus 227 i~f~f~g--~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 227 LTFNFGG--ATISVPLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred EEEEECC--eEEEEEHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 9999987 899999999998764 256675 6665542 4799999999999999999999999997
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1e-46 Score=361.84 Aligned_cols=266 Identities=20% Similarity=0.227 Sum_probs=204.7
Q ss_pred EEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCC-CCccceeec
Q 038219 47 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNN-HTCSRFPAN 125 (435)
Q Consensus 47 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~y 125 (435)
|+++|+||||||++.|+|||||+++||+|..|. .| .|.....|+|. .+++|.. ..|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--------~~---~~~~~~~y~~~------~Sst~~~~~~~~~~i~- 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--------AA---QQGGHKLYDPS------KSSTAKLLPGATWSIS- 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--------ch---hhccCCcCCCc------cCccceecCCcEEEEE-
Confidence 799999999999999999999999999998762 12 23333334442 3445543 56899999
Q ss_pred ccCCcc-ceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEeeCCCCCc---------
Q 038219 126 SISRES-TNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRTQVS--------- 194 (435)
Q Consensus 126 ~y~~g~-~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s--------- 194 (435)
|++|+ +. |.+++|+|+|+ + +.++++.|||++..... ......+||||||++..+
T Consensus 63 -Y~~G~~~~-G~~~~D~v~ig------~-------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~ 127 (278)
T cd06097 63 -YGDGSSAS-GIVYTDTVSIG------G-------VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKT 127 (278)
T ss_pred -eCCCCeEE-EEEEEEEEEEC------C-------EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCC
Confidence 78886 56 99999999994 3 37889999999876321 122468999999987543
Q ss_pred hhhhhhhccCCCCceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEEC
Q 038219 195 LPSQFSAAFNFDRKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIG 274 (435)
Q Consensus 195 ~~~ql~~~~~i~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~ 274 (435)
+..+|.+++. ++.||+||.+ ...|+|+|||+|+ .++.|++.|+|++.+ ..+|.|.+++|+|+
T Consensus 128 ~~~~l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~--~~~~g~l~~~pi~~~-------------~~~w~v~l~~i~v~ 189 (278)
T cd06097 128 FFENALSSLD-APLFTADLRK--AAPGFYTFGYIDE--SKYKGEISWTPVDNS-------------SGFWQFTSTSYTVG 189 (278)
T ss_pred HHHHHHHhcc-CceEEEEecC--CCCcEEEEeccCh--HHcCCceEEEEccCC-------------CcEEEEEEeeEEEC
Confidence 4556666644 6789999987 3579999999997 678999999999753 47999999999999
Q ss_pred CEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEE
Q 038219 275 GNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHL 354 (435)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~ 354 (435)
++..... .+..+||||||+++++|+++++++.+++.... +.. ...+|..+|.. .+|+|+|
T Consensus 190 ~~~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---~~~------~~~~~~~~C~~--~~P~i~f 249 (278)
T cd06097 190 GDAPWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---YDS------EYGGWVFPCDT--TLPDLSF 249 (278)
T ss_pred Ccceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc---ccC------CCCEEEEECCC--CCCCEEE
Confidence 8743221 13679999999999999999999888874221 111 11245555543 3899988
Q ss_pred EEcCCceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 355 VLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 355 ~f~g~~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
+| .||||++|||++|+|||++|+|||||+
T Consensus 250 ~~------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 250 AV------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EE------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 87 489999999999999999999999994
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.6e-45 Score=358.52 Aligned_cols=303 Identities=20% Similarity=0.334 Sum_probs=235.6
Q ss_pred eEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceeec
Q 038219 46 QYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPAN 125 (435)
Q Consensus 46 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~y 125 (435)
+|+++|.||||+|+++|++||||+++||++..|... ..|.....|+|. .+++|....+.+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----------~~~~~~~~y~~~------~S~t~~~~~~~~~~~- 63 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----------SSCASSGFYNPS------KSSTFSNQGKPFSIS- 63 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----------THHCTSC-BBGG------GSTTEEEEEEEEEEE-
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----------cccccccccccc------cccccccceeeeeee-
Confidence 599999999999999999999999999998765221 245544555553 234455667788898
Q ss_pred ccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCC-CCCCCcceEEeeCCC-------CCchhh
Q 038219 126 SISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLD-GLATGVKGMAGLGRT-------QVSLPS 197 (435)
Q Consensus 126 ~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~-------~~s~~~ 197 (435)
|+++++. |.+++|+|+|+ + +.++++.||++...... ......+||||||+. ..+++.
T Consensus 64 -y~~g~~~-G~~~~D~v~ig------~-------~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~ 128 (317)
T PF00026_consen 64 -YGDGSVS-GNLVSDTVSIG------G-------LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLD 128 (317)
T ss_dssp -ETTEEEE-EEEEEEEEEET------T-------EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHH
T ss_pred -ccCcccc-cccccceEeee------e-------ccccccceeccccccccccccccccccccccCCcccccccCCccee
Confidence 8988877 99999999994 3 47778999999885211 113468999999974 356888
Q ss_pred hhhhccCC-CCceEEecCCCCCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCE
Q 038219 198 QFSAAFNF-DRKFSICLSSSTTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGN 276 (435)
Q Consensus 198 ql~~~~~i-~~~FS~~L~~~~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~ 276 (435)
+|.+++.| +++||++|.+.....|.|+|||+|+ .++.+++.|+|+.. ..+|.|.+.+|.++++
T Consensus 129 ~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~--~~~~g~~~~~~~~~--------------~~~w~v~~~~i~i~~~ 192 (317)
T PF00026_consen 129 QLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDP--SKYDGDLVWVPLVS--------------SGYWSVPLDSISIGGE 192 (317)
T ss_dssp HHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEG--GGEESEEEEEEBSS--------------TTTTEEEEEEEEETTE
T ss_pred cchhhccccccccceeeeecccccchheeecccc--ccccCceeccCccc--------------cccccccccccccccc
Confidence 99999999 4779999999755679999999997 77889999999983 4799999999999998
Q ss_pred EeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEE
Q 038219 277 VVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVL 356 (435)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 356 (435)
...... ...++||||+++++||++++++|++++..... . .++..+|.....+|.++|.|
T Consensus 193 ~~~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------~------~~~~~~c~~~~~~p~l~f~~ 251 (317)
T PF00026_consen 193 SVFSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------D------GVYSVPCNSTDSLPDLTFTF 251 (317)
T ss_dssp EEEEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE------C------SEEEEETTGGGGSEEEEEEE
T ss_pred cccccc---------ceeeecccccccccccchhhHHHHhhhccccc------c------eeEEEecccccccceEEEee
Confidence 322211 13589999999999999999999999875543 1 23444444333689999999
Q ss_pred cCCceEEEEcCCccEEEeCCc--eEEEE-EEeCC-CCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 357 PGNNRVWKIYGANSMVRVGKD--AMCLA-FVDGG-VNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 357 ~g~~~~~~ip~~~y~~~~~~~--~~C~~-~~~~~-~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
++ .++.||+++|+.+.... ..|+. +...+ ......+|||.+|||++|+|||.|++|||||+
T Consensus 252 ~~--~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 252 GG--VTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp TT--EEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred CC--EEEEecchHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 97 89999999999987653 37874 44411 12246899999999999999999999999997
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=4.5e-44 Score=343.90 Aligned_cols=274 Identities=24% Similarity=0.405 Sum_probs=216.5
Q ss_pred EEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceeecc
Q 038219 47 YLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPANS 126 (435)
Q Consensus 47 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~y~ 126 (435)
|+++|.||+|+|++.|+|||||+++||+|..|. .|....+... .+.+ ..+..|.+..|.|++.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--------~~~~~~~~~~-~~~~------~~s~~~~~~~~~~~~~-- 63 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--------SCSCQKHPRF-KYDS------SKSSTYKDTGCTFSIT-- 63 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--------ccccccCCCC-ccCc------cCCceeecCCCEEEEE--
Confidence 789999999999999999999999999998762 1211111100 0111 2344567889999999
Q ss_pred cCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCC------Cchhhhhh
Q 038219 127 ISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQ------VSLPSQFS 200 (435)
Q Consensus 127 y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~ 200 (435)
|+++++. |.+++|+|++++ ..++++.|||++...........+||||||+.. .+++.||.
T Consensus 64 Y~~g~~~-g~~~~D~v~~~~-------------~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~ 129 (283)
T cd05471 64 YGDGSVT-GGLGTDTVTIGG-------------LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLK 129 (283)
T ss_pred ECCCeEE-EEEEEeEEEECC-------------EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHH
Confidence 7888888 999999999953 257899999999874322345789999999987 78999999
Q ss_pred hccCC-CCceEEecCCC--CCCCceEEEcCCCCCCcCCCCCceEeeCccCCCCCCCcccCCCCCcceEEEEeEEEECCEE
Q 038219 201 AAFNF-DRKFSICLSSS--TTSNGAVFFGDVPFPNIDVSKSLIYTPLILNPVHNEGLAFKGDPSTDYFIEIKSILIGGNV 277 (435)
Q Consensus 201 ~~~~i-~~~FS~~L~~~--~~~~G~l~fGg~d~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~y~v~l~~i~v~~~~ 277 (435)
+++.| +++||+||.+. ....|.|+|||+|+ .++.+++.|+|++... ..+|.|.+.+|.++++.
T Consensus 130 ~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~--~~~~~~~~~~p~~~~~------------~~~~~v~l~~i~v~~~~ 195 (283)
T cd05471 130 SQGLISSPVFSFYLGRDGDGGNGGELTFGGIDP--SKYTGDLTYTPVVSNG------------PGYWQVPLDGISVGGKS 195 (283)
T ss_pred HCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCc--cccCCceEEEecCCCC------------CCEEEEEeCeEEECCce
Confidence 99987 57899999985 35689999999997 5678999999998752 57999999999999874
Q ss_pred eecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccceeccCCCCcccCeEEEEEc
Q 038219 278 VPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALLFNIPRVKPIAPFGACFNSSFIGGTTAPEIHLVLP 357 (435)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~ 357 (435)
.... .....++|||||++++||+++|++|.+++..... . ...|+...+.....+|.|+|+|
T Consensus 196 ~~~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~-~---------~~~~~~~~~~~~~~~p~i~f~f- 256 (283)
T cd05471 196 VISS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS-S---------SDGGYGVDCSPCDTLPDITFTF- 256 (283)
T ss_pred eeec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc-c---------cCCcEEEeCcccCcCCCEEEEE-
Confidence 1111 1246799999999999999999999999976654 0 1234444443334799999998
Q ss_pred CCceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEEEee
Q 038219 358 GNNRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 358 g~~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
.+|||++|||++|++||++++|||||+
T Consensus 257 -----------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999984
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=1.6e-29 Score=222.82 Aligned_cols=159 Identities=38% Similarity=0.654 Sum_probs=126.7
Q ss_pred EEEEEeeCCCCceEEEEEEcCCCceeecC----CCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccce
Q 038219 47 YLTQIKQRTPLVPVKLTLDLGGQFLWVDC----DQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRF 122 (435)
Q Consensus 47 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~----~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 122 (435)
|+++|+||||+|++.|++||||+++|++| -.+.+|+||+.++|.++.|.......+ ...|.+..|.|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~--------~~~~~~~~C~y~ 72 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSFCP--------CCCCSNNSCPYS 72 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSSBT--------CCTCESSEEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccccc--------cCCCCcCcccce
Confidence 89999999999999999999999999999 446899999999999999987665411 112357889999
Q ss_pred eecccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCCCCCchhhhhhhc
Q 038219 123 PANSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGRTQVSLPSQFSAA 202 (435)
Q Consensus 123 ~~y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~ 202 (435)
+. |++++...|.+++|+|++...+ +. ...+.++.|||++... +.....+||||||+.++||++||.++
T Consensus 73 ~~--y~~~s~~~G~l~~D~~~~~~~~--~~------~~~~~~~~FGC~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~ 140 (164)
T PF14543_consen 73 QS--YGDGSSSSGFLASDTLTFGSSS--GG------SNSVPDFIFGCATSNS--GLFYGADGILGLGRGPLSLPSQLASS 140 (164)
T ss_dssp EE--ETTTEEEEEEEEEEEEEEEEES--SS------SEEEEEEEEEEE-GGG--TSSTTEEEEEE-SSSTTSHHHHHHHH
T ss_pred ee--cCCCccccCceEEEEEEecCCC--CC------CceeeeEEEEeeeccc--cCCcCCCcccccCCCcccHHHHHHHh
Confidence 99 6766666699999999998764 21 1467789999999983 55568999999999999999999887
Q ss_pred cCCCCceEEecCC-CCCCCceEEEcC
Q 038219 203 FNFDRKFSICLSS-STTSNGAVFFGD 227 (435)
Q Consensus 203 ~~i~~~FS~~L~~-~~~~~G~l~fGg 227 (435)
..++|||||.+ +....|.|+||+
T Consensus 141 --~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S-SSSSEEEEEECS
T ss_pred --cCCeEEEECCCCCCCCCEEEEeCc
Confidence 44899999999 456789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=1.4e-26 Score=203.88 Aligned_cols=155 Identities=27% Similarity=0.561 Sum_probs=122.4
Q ss_pred ceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHHHHHHHHHhh-cCCCC-CCCCCCccccee
Q 038219 263 DYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAFIETFSKALL-FNIPR-VKPIAPFGACFN 340 (435)
Q Consensus 263 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l~~~i~~~~~-~~~~~-~~~~~~~~~C~~ 340 (435)
+|.|+|++|+||++++++++..++. ..+.+++||||||++++||+++|++|+++|.+.+. .++.+ ......+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5899999999999999999888766 56678999999999999999999999999999998 22333 334566789999
Q ss_pred ccCC----CCcccCeEEEEEcCCceEEEEcCCccEEEeCCceEEEEEEeCCCCCCCeeeechhhhcccEEEEeCCCCEEE
Q 038219 341 SSFI----GGTTAPEIHLVLPGNNRVWKIYGANSMVRVGKDAMCLAFVDGGVNPRTSVVIGGYQLEDNLLEFNLAKSRLG 416 (435)
Q Consensus 341 ~~~~----~~~~~P~i~~~f~g~~~~~~ip~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIG 416 (435)
.+.. ....+|+|+|+|.+ +++|++++++|++...++..|+++..........+|||..+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 9882 33589999999998 699999999999999888999999887222246789999999999999999999999
Q ss_pred Eee
Q 038219 417 FSS 419 (435)
Q Consensus 417 fa~ 419 (435)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.80 E-value=2.5e-19 Score=147.11 Aligned_cols=107 Identities=25% Similarity=0.292 Sum_probs=79.9
Q ss_pred EEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccC-CCcccCCCCCCCCCCCCCccceeeccc
Q 038219 49 TQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSK-SCIDEYSCSPGPGCNNHTCSRFPANSI 127 (435)
Q Consensus 49 ~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~-~~~~~~~~~~~~~c~~~~~~~~~~y~y 127 (435)
++|.||||||++.|+|||||+++||+|..|. .|. |.....+ ++ ..++++....|.|.+. |
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--------~~~---~~~~~~~~~~------~~sst~~~~~~~~~~~--Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--------SLA---IYSHSSYDDP------SASSTYSDNGCTFSIT--Y 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--------Ccc---cccccccCCc------CCCCCCCCCCcEEEEE--e
Confidence 4799999999999999999999999998762 121 2222222 22 1234456678999999 8
Q ss_pred CCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCC-CCCCcceEEee
Q 038219 128 SRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDG-LATGVKGMAGL 188 (435)
Q Consensus 128 ~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGL 188 (435)
++|++. |.+++|+|+|+ . ..++++.|||++...... .....+|||||
T Consensus 62 ~~g~~~-g~~~~D~v~ig------~-------~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTGSLS-GGLSTDTVSIG------D-------IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCCeEE-EEEEEEEEEEC------C-------EEECCEEEEEEEecCCccccccccccccCC
Confidence 888888 99999999994 3 368899999999874321 22468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.53 E-value=0.00025 Score=55.90 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=58.0
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecCCCCCCCCCcccccCCcccccccccCCCcccCCCCCCCCCCCCCccceee
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDCDQGYVSTSYKPARCGSAQCKLARSKSCIDEYSCSPGPGCNNHTCSRFPA 124 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~c~~Sst~~~~~C~~~~C~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 124 (435)
+.|++++.|+. +++++++||||+.+|+.... .+ .+... ........+.
T Consensus 1 ~~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~------~~-------~l~~~-----------------~~~~~~~~~~ 48 (96)
T cd05483 1 GHFVVPVTING--QPVRFLLDTGASTTVISEEL------AE-------RLGLP-----------------LTLGGKVTVQ 48 (96)
T ss_pred CcEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HH-------HcCCC-----------------ccCCCcEEEE
Confidence 36899999995 99999999999999986421 00 00000 0111223444
Q ss_pred cccCCccceeeeEEEEEEEeeeeccCCCCCCCCcccccCceEEecccCCcCCCCCCCcceEEeeCC
Q 038219 125 NSISRESTNRGELATDVVSIQSIDIDGKANPPGQFVSVPNLIFSCGPTFLLDGLATGVKGMAGLGR 190 (435)
Q Consensus 125 y~y~~g~~~~G~~~~D~v~~~~~~~~G~~~~~~~~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~ 190 (435)
..+|.........+.++++ + ..+.++.+....... . ..+||||+.+
T Consensus 49 --~~~G~~~~~~~~~~~i~ig------~-------~~~~~~~~~v~d~~~--~---~~~gIlG~d~ 94 (96)
T cd05483 49 --TANGRVRAARVRLDSLQIG------G-------ITLRNVPAVVLPGDA--L---GVDGLLGMDF 94 (96)
T ss_pred --ecCCCccceEEEcceEEEC------C-------cEEeccEEEEeCCcc--c---CCceEeChHH
Confidence 3455544355667888883 3 356667776665541 1 4799999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.47 E-value=0.013 Score=48.70 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=31.5
Q ss_pred EeEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 36 LLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 36 ~pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
+||..+ .++.|++++.|.. +++.+++|||++.+-++.
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCH
Confidence 567763 6789999999987 799999999999988753
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.41 E-value=1.2 Score=37.03 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.8
Q ss_pred eeeechhhhcccEEEEeCCCCEEE
Q 038219 393 SVVIGGYQLEDNLLEFNLAKSRLG 416 (435)
Q Consensus 393 ~~ILG~~flr~~yvvfD~~~~rIG 416 (435)
-.|||..||+.+-.+.|+.+++|-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 359999999999999999999885
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.19 E-value=0.39 Score=36.81 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEeeCCCCceEEEEEEcCCCceeec
Q 038219 49 TQIKQRTPLVPVKLTLDLGGQFLWVD 74 (435)
Q Consensus 49 ~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 74 (435)
+++.|+. +++++++|||++.+.+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~ 24 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVIS 24 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEEC
Confidence 3677776 89999999999987775
No 31
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=92.18 E-value=1.3 Score=35.76 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred eeeechhhhcccEEEEeCCCCEE
Q 038219 393 SVVIGGYQLEDNLLEFNLAKSRL 415 (435)
Q Consensus 393 ~~ILG~~flr~~yvvfD~~~~rI 415 (435)
..+||..||+.+-++-|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999988753
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.10 E-value=0.37 Score=40.79 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=24.6
Q ss_pred eeechhhhcccEEEEeCCCCEEEEee
Q 038219 394 VVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 394 ~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
.|||..+|+.|..+-|+.+++|-|..
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeC
Confidence 69999999999999999999999975
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.70 E-value=0.18 Score=39.29 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=24.3
Q ss_pred EEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 47 YLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 47 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
|++++.|+. +++.+++||||+.+++.-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578999998 999999999999999864
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.35 E-value=1 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.6
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
..+.+++++.||. +.+..++||||+...++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4578999999999 999999999999988764
No 35
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.37 E-value=1.5 Score=33.50 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.6
Q ss_pred CeEEecCcceeeeCHHHHHHH
Q 038219 294 GTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 294 ~~iiDTGTs~~~lp~~~y~~l 314 (435)
.++||||++.+.++++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 378999999999998776654
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.59 E-value=2.5 Score=32.79 Aligned_cols=30 Identities=17% Similarity=0.445 Sum_probs=24.3
Q ss_pred EEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHH
Q 038219 270 SILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 270 ~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l 314 (435)
.+.|+|+.+. +.+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888664 57999999999999887654
No 37
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=82.47 E-value=8.2 Score=33.49 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=16.8
Q ss_pred CeEEecCcceeeeCHHHHHHH
Q 038219 294 GTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 294 ~~iiDTGTs~~~lp~~~y~~l 314 (435)
.+++|||+...+...++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 479999999999888665544
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.45 E-value=1.8 Score=34.05 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.0
Q ss_pred EEEEeeCCCCceEEEEEEcCCCceeecCC
Q 038219 48 LTQIKQRTPLVPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 48 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~ 76 (435)
+++|.+.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 56788888 8999999999999888753
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=81.85 E-value=2.8 Score=34.66 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=26.1
Q ss_pred CcceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHH
Q 038219 261 STDYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 261 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l 314 (435)
.++|.+ .+.|+|+.+ .++||||++.+.+++++.+++
T Consensus 9 ~g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 455654 456788744 379999999999999776543
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.03 E-value=4.3 Score=30.02 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.6
Q ss_pred eEEecCcceeeeCHHHHHHH
Q 038219 295 TKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 295 ~iiDTGTs~~~lp~~~y~~l 314 (435)
+++|||++-.+++.+..+.+
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 78999999999999777665
No 41
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=79.92 E-value=2.7 Score=34.88 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.5
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeec
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVD 74 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 74 (435)
....+++++.|+. +++++++|||++.+++.
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is 42 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMS 42 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeC
Confidence 4567899999997 89999999999999885
No 42
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=79.90 E-value=66 Score=31.83 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=22.6
Q ss_pred ceEEEEEeeCCCC----ceE-EEEEEcCCCceeecC
Q 038219 45 LQYLTQIKQRTPL----VPV-KLTLDLGGQFLWVDC 75 (435)
Q Consensus 45 ~~Y~~~i~iGtP~----Q~~-~v~~DTGSs~~Wv~~ 75 (435)
+.-++.|+|=.|. |.+ +|++||||.=|-+..
T Consensus 22 N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~ 57 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFA 57 (370)
T ss_pred cceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHH
Confidence 5567788886653 566 899999998766543
No 43
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.28 E-value=11 Score=33.91 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=35.3
Q ss_pred CCcceEEeEeeCCCCceEEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 30 KPKALALLVSKDSSTLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 30 ~~~~~~~pl~~~~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
.....++-|++ ..++-|.++..|-. |++..++|||-+.+-++.
T Consensus 90 ~~g~~~v~Lak-~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~ 132 (215)
T COG3577 90 GDGYQEVSLAK-SRDGHFEANGRVNG--KKVDFLVDTGATSVALNE 132 (215)
T ss_pred CCCceEEEEEe-cCCCcEEEEEEECC--EEEEEEEecCcceeecCH
Confidence 33445777777 46889999999988 999999999999888764
No 44
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.01 E-value=5.4 Score=30.65 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.1
Q ss_pred CeEEecCcceeeeCHHHHHHH
Q 038219 294 GTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 294 ~~iiDTGTs~~~lp~~~y~~l 314 (435)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 378999999999998765544
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.00 E-value=4.5 Score=31.02 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.5
Q ss_pred eEEecCcceeeeCHHHHHHH
Q 038219 295 TKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 295 ~iiDTGTs~~~lp~~~y~~l 314 (435)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 68999999999999877664
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.06 E-value=5.5 Score=30.86 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.4
Q ss_pred EEeeCCCCceEEEEEEcCCCceeecC
Q 038219 50 QIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 50 ~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
.++|+. |.+.+++|||+.++-+.-
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcc
Confidence 466775 999999999999998864
No 47
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=66.84 E-value=7.1 Score=30.61 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=20.4
Q ss_pred eEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHH
Q 038219 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETS 309 (435)
Q Consensus 269 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~ 309 (435)
..|.++|+.+. ++||||+..+.++++
T Consensus 8 i~v~i~g~~i~---------------~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 8 ITVKINGKKIK---------------ALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEETTEEEE---------------EEEETTBSSEEESSG
T ss_pred EEEeECCEEEE---------------EEEecCCCcceeccc
Confidence 34677777553 789999999999974
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.19 E-value=6.9 Score=30.00 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEeeCCCCceEEEEEEcCCCceeecC
Q 038219 50 QIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 50 ~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
.+.|.. |++++++|||++.+-+..
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECH
Confidence 355655 899999999999998864
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.04 E-value=22 Score=32.16 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.2
Q ss_pred CcceEEEEeEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHH
Q 038219 261 STDYFIEIKSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 261 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l 314 (435)
.+||.+ ...|||+.+. .++|||.|.+.++++..+++
T Consensus 103 ~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 456654 5678888764 58999999999998765543
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=59.52 E-value=12 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.6
Q ss_pred CeEEecCcceeeeCHHHHHHH
Q 038219 294 GTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 294 ~~iiDTGTs~~~lp~~~y~~l 314 (435)
.+.+|||++...+|.+.|+.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 367999999999998777654
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=51.95 E-value=25 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=22.6
Q ss_pred eEEEECCEEeecCcccccccccCCCCeEEecCcceeeeCHHHHHHH
Q 038219 269 KSILIGGNVVPLNTSLLSINKQGNGGTKVSTADPYTVLETSIYKAF 314 (435)
Q Consensus 269 ~~i~v~~~~~~~~~~~~~~~~~g~~~~iiDTGTs~~~lp~~~y~~l 314 (435)
..++++|+.+. |+||||+..+.++.+..+++
T Consensus 27 I~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 35778888663 78999999999999776653
No 52
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=51.61 E-value=20 Score=33.88 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=29.8
Q ss_pred ceEEeEeeCCCCceEEEE---EeeCC---CCceEEEEEEcCCCceeecCC
Q 038219 33 ALALLVSKDSSTLQYLTQ---IKQRT---PLVPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 33 ~~~~pl~~~~~~~~Y~~~---i~iGt---P~Q~~~v~~DTGSs~~Wv~~~ 76 (435)
..-.|+..+.....|.++ |+||. +.....++||||++++.+|..
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 344566654334577666 68874 234567999999999999854
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.17 E-value=15 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=17.6
Q ss_pred eEEecCcc-eeeeCHHHHHHH
Q 038219 295 TKVSTADP-YTVLETSIYKAF 314 (435)
Q Consensus 295 ~iiDTGTs-~~~lp~~~y~~l 314 (435)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999888775
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=47.92 E-value=27 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCceEEEEEeeCCCCceEEEEEEcCCCceeec
Q 038219 43 STLQYLTQIKQRTPLVPVKLTLDLGGQFLWVD 74 (435)
Q Consensus 43 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 74 (435)
....+|++++|.. ++++.++|||+..+-+.
T Consensus 21 ~v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 21 QVSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp -----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred CcceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 3568899999999 99999999999888775
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=44.89 E-value=28 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=27.1
Q ss_pred cceEEeEeeCCC--CceEEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 32 KALALLVSKDSS--TLQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 32 ~~~~~pl~~~~~--~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
+--..||..... ...=..++.++.-..+++++|||||....+..
T Consensus 16 ~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 16 SITTCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred eeeeeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 344566665321 12223444455555899999999999877754
No 56
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=44.65 E-value=1.9e+02 Score=26.14 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=19.8
Q ss_pred eeeechhhhcccEEEEeCCCCEEEEee
Q 038219 393 SVVIGGYQLEDNLLEFNLAKSRLGFSS 419 (435)
Q Consensus 393 ~~ILG~~flr~~yvvfD~~~~rIGfa~ 419 (435)
-.|||..|+|.|+=.-+++ .+|-|-.
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 3699999999887666665 4677764
No 57
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=43.25 E-value=1.6e+02 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.104 Sum_probs=15.2
Q ss_pred CCeEEecCcceeeeCHHH
Q 038219 293 GGTKVSTADPYTVLETSI 310 (435)
Q Consensus 293 ~~~iiDTGTs~~~lp~~~ 310 (435)
-..+||||+....+|...
T Consensus 10 ~~fLVDTGA~vSviP~~~ 27 (89)
T cd06094 10 LRFLVDTGAAVSVLPASS 27 (89)
T ss_pred cEEEEeCCCceEeecccc
Confidence 468999999999999743
No 58
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=36.43 E-value=57 Score=30.56 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=30.1
Q ss_pred CcceEEeEeeCC-CCceEEEE---EeeCCC-------------CceEEEEEEcCCCceeecCC
Q 038219 31 PKALALLVSKDS-STLQYLTQ---IKQRTP-------------LVPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 31 ~~~~~~pl~~~~-~~~~Y~~~---i~iGtP-------------~Q~~~v~~DTGSs~~Wv~~~ 76 (435)
.+..-.|+..+. ....|.++ |+||.- .....++||||++++.+|..
T Consensus 131 ~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 131 SGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 445567776532 23566655 688852 12356899999999999853
No 59
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=36.03 E-value=53 Score=30.66 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=31.4
Q ss_pred CcceEEeEeeCCCCceEEEE---EeeCC-----CCceEEEEEEcCCCceeecCC
Q 038219 31 PKALALLVSKDSSTLQYLTQ---IKQRT-----PLVPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 31 ~~~~~~pl~~~~~~~~Y~~~---i~iGt-----P~Q~~~v~~DTGSs~~Wv~~~ 76 (435)
......|+... ....|.+. |.||. ......++||||++.+++|..
T Consensus 167 ~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 167 GDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred CceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 34456666653 24566655 56775 246789999999999999854
No 60
>PLN03146 aspartyl protease family protein; Provisional
Probab=35.98 E-value=49 Score=33.81 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=28.4
Q ss_pred ceEEeEeeCCCCceEEEE---EeeCC-----CCce------EEEEEEcCCCceeecC
Q 038219 33 ALALLVSKDSSTLQYLTQ---IKQRT-----PLVP------VKLTLDLGGQFLWVDC 75 (435)
Q Consensus 33 ~~~~pl~~~~~~~~Y~~~---i~iGt-----P~Q~------~~v~~DTGSs~~Wv~~ 75 (435)
....|+..+.....|++. |+||. |+-. -.++||||+++++++-
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 345677643234577766 68885 2211 2589999999999974
No 61
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=33.47 E-value=58 Score=30.74 Aligned_cols=42 Identities=7% Similarity=-0.080 Sum_probs=28.4
Q ss_pred cceEEeEeeCCCCceEEEE---EeeCCC----CceEEEEEEcCCCceeecC
Q 038219 32 KALALLVSKDSSTLQYLTQ---IKQRTP----LVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 32 ~~~~~pl~~~~~~~~Y~~~---i~iGtP----~Q~~~v~~DTGSs~~Wv~~ 75 (435)
...-+|+..+ ...|.++ |+||.- .....++||||++.+++|-
T Consensus 166 ~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~ 214 (278)
T cd06097 166 EISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214 (278)
T ss_pred ceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCH
Confidence 3445666542 3566655 567742 3567899999999999884
No 62
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.38 E-value=51 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.7
Q ss_pred EEEeeCCCCc----eEEEEEEcCCCcee-ec
Q 038219 49 TQIKQRTPLV----PVKLTLDLGGQFLW-VD 74 (435)
Q Consensus 49 ~~i~iGtP~Q----~~~v~~DTGSs~~W-v~ 74 (435)
+++.|..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888732 67899999998664 54
No 63
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=32.53 E-value=44 Score=31.98 Aligned_cols=46 Identities=11% Similarity=-0.033 Sum_probs=30.3
Q ss_pred CcceEEeEeeCC-CCceEEEE---EeeCCCC--------ceEEEEEEcCCCceeecCC
Q 038219 31 PKALALLVSKDS-STLQYLTQ---IKQRTPL--------VPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 31 ~~~~~~pl~~~~-~~~~Y~~~---i~iGtP~--------Q~~~v~~DTGSs~~Wv~~~ 76 (435)
+...-+|+..+. ....|.++ |+||.-. ....+++|||++++.+|-.
T Consensus 131 g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 131 AGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 445667776543 23567666 6887521 2236899999999999843
No 64
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=30.05 E-value=69 Score=30.35 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=28.5
Q ss_pred ceEEeEeeCCC---CceEEEE---EeeCCC-------CceEEEEEEcCCCceeecCC
Q 038219 33 ALALLVSKDSS---TLQYLTQ---IKQRTP-------LVPVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 33 ~~~~pl~~~~~---~~~Y~~~---i~iGtP-------~Q~~~v~~DTGSs~~Wv~~~ 76 (435)
...+|+..+.. ...|.++ |.+|.- .....++||||++.+++|-.
T Consensus 139 ~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 139 LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 34556655322 1456554 677752 24568899999999999854
No 65
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=27.64 E-value=78 Score=26.58 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=24.3
Q ss_pred ceEEEEEeeCCCCceEEEEEEcCCCceeecC
Q 038219 45 LQYLTQIKQRTPLVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 45 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 75 (435)
..-.+.+.|.+ ++..++||+|++...+..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45677888888 999999999999888753
No 66
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=25.88 E-value=76 Score=30.67 Aligned_cols=31 Identities=10% Similarity=-0.115 Sum_probs=22.8
Q ss_pred ceEEEE---EeeCCC-----CceEEEEEEcCCCceeecC
Q 038219 45 LQYLTQ---IKQRTP-----LVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 45 ~~Y~~~---i~iGtP-----~Q~~~v~~DTGSs~~Wv~~ 75 (435)
..|.++ |+||.. .+...++||||++++++|-
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 456665 678752 2346799999999999884
No 67
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.86 E-value=30 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=10.9
Q ss_pred Cccc-chhHHHHHHHHhhcCC
Q 038219 1 MARS-YNCLLFCFIVLFIIPP 20 (435)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~~ 20 (435)
||+- +.+++++++++++|+.
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 6644 4555555555555554
No 68
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=25.21 E-value=82 Score=30.67 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=26.6
Q ss_pred ceEEeEeeCCCCceEEEE---EeeCCC---CceEEEEEEcCCCceeecC
Q 038219 33 ALALLVSKDSSTLQYLTQ---IKQRTP---LVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 33 ~~~~pl~~~~~~~~Y~~~---i~iGtP---~Q~~~v~~DTGSs~~Wv~~ 75 (435)
...+|+.. ...|.++ +.||.- .++..++||||++.+.+|-
T Consensus 181 l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~ 226 (329)
T cd05485 181 FTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPV 226 (329)
T ss_pred eEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCH
Confidence 34556543 3466665 567752 2345799999999999874
No 69
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=23.45 E-value=93 Score=30.23 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=23.0
Q ss_pred ceEEEE---EeeCCC------CceEEEEEEcCCCceeecC
Q 038219 45 LQYLTQ---IKQRTP------LVPVKLTLDLGGQFLWVDC 75 (435)
Q Consensus 45 ~~Y~~~---i~iGtP------~Q~~~v~~DTGSs~~Wv~~ 75 (435)
..|.++ |+||.. .....+++|||++++++|.
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 466665 678853 2455689999999999984
No 70
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=23.30 E-value=96 Score=30.82 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=28.0
Q ss_pred ceEEeEeeCC-CCceEEEE---EeeCCCCc-------------eEEEEEEcCCCceeecCC
Q 038219 33 ALALLVSKDS-STLQYLTQ---IKQRTPLV-------------PVKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 33 ~~~~pl~~~~-~~~~Y~~~---i~iGtP~Q-------------~~~v~~DTGSs~~Wv~~~ 76 (435)
..-.||..+. ....|+++ |+||.-.- .-.++||||++++.+|-.
T Consensus 186 ~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 186 LSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSD 246 (362)
T ss_pred ccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHH
Confidence 3455665542 23577766 78884111 125999999999998743
No 71
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=1.9e+02 Score=28.99 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=30.1
Q ss_pred cceEEeEeeCCCCceEEEE---EeeCC----CCce-----EEEEEEcCCCceeecCC
Q 038219 32 KALALLVSKDSSTLQYLTQ---IKQRT----PLVP-----VKLTLDLGGQFLWVDCD 76 (435)
Q Consensus 32 ~~~~~pl~~~~~~~~Y~~~---i~iGt----P~Q~-----~~v~~DTGSs~~Wv~~~ 76 (435)
...-.||..... ..|.+. |+||. ++-. ..+++|||++++++|..
T Consensus 230 ~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~ 285 (398)
T KOG1339|consen 230 SLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTS 285 (398)
T ss_pred ceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHH
Confidence 345688887443 467655 66885 3222 45799999999999853
No 72
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.72 E-value=1.6e+02 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.4
Q ss_pred CeEEecCcceeeeCHHHHHH
Q 038219 294 GTKVSTADPYTVLETSIYKA 313 (435)
Q Consensus 294 ~~iiDTGTs~~~lp~~~y~~ 313 (435)
.+++|+|++...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 47899999999999877653
Done!