BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038220
(866 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 65/331 (19%)
Query: 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC-----AWAYVSQEYRKWEI--LQDLCKKV 244
++I GMAG GK+ LA + + + + C W V ++ + + LQ+LC ++
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSL---LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 206
Query: 245 LGLGKADLDK-------MHMEDMKEELSNFL--QERRFIIVLDDIWEKEAWDDLKAVFPD 295
D D+ +++E+ K+ L + + R +++LDD+W+ +W V
Sbjct: 207 ------DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD--SW-----VLKA 253
Query: 296 AKNGSRIIFTTRFKDVAVYADPGSPPYELCL---LNEEDSCELLFKKAFAGGNAMSSLPP 352
+ +I+ TTR D +V P Y + + L +E E+L + + LP
Sbjct: 254 FDSQCQILLTTR--DKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SLFVNMKKADLP- 307
Query: 353 WSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMD--- 409
E I+K+C G PL + ++G LL + +LK LQ+ Q++ + + D
Sbjct: 308 ---EQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK-RIRKSSSYDYEA 363
Query: 410 ---ILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAE 466
+ +S + L +K + + + +D ++ + L +LW E E+V E
Sbjct: 364 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET----------EEV-E 412
Query: 467 DYLEELVGRSMVEPASRKSNGKIKTIRVHDL 497
D L+E V +S++ NGK +HDL
Sbjct: 413 DILQEFVNKSLL---FCDRNGKSFRYYLHDL 440
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 65/331 (19%)
Query: 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC-----AWAYVSQEYRKWEI--LQDLCKKV 244
++I GMAG GK+ LA + + + + C W V ++ + + LQ+LC ++
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSL---LEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRL 212
Query: 245 LGLGKADLDK-------MHMEDMKEELSNFL--QERRFIIVLDDIWEKEAWDDLKAVFPD 295
D D+ +++E+ K+ L + + R +++LDD+W+ +W V
Sbjct: 213 ------DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD--SW-----VLKA 259
Query: 296 AKNGSRIIFTTRFKDVAVYADPGSPPYELCL---LNEEDSCELLFKKAFAGGNAMSSLPP 352
+ +I+ TTR D +V P Y + + L +E E+L + + LP
Sbjct: 260 FDSQCQILLTTR--DKSVTDSVMGPKYVVPVESSLGKEKGLEIL---SLFVNMKKADLP- 313
Query: 353 WSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMD--- 409
E I+K+C G PL + ++G LL + +LK LQ+ Q++ + + D
Sbjct: 314 ---EQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK-RIRKSSSYDYEA 369
Query: 410 ---ILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAE 466
+ +S + L +K + + + +D ++ + L +LW E E+V E
Sbjct: 370 LDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEV-E 418
Query: 467 DYLEELVGRSMVEPASRKSNGKIKTIRVHDL 497
D L+E V +S++ NGK +HDL
Sbjct: 419 DILQEFVNKSLLFC---DRNGKSFRYYLHDL 446
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 151/351 (43%), Gaps = 68/351 (19%)
Query: 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC-----AWAYVSQEYRKWEI--LQDLCKKV 244
++I GMAG GK+ LA + + + + C W + ++ + + LQ+LC +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSL---LEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR- 205
Query: 245 LGLGKADLDK---------MHMEDMKEELSNFL--QERRFIIVLDDIWEKEAWDDLKAVF 293
LD+ +++E+ K+ L + + R +++LDD+W+ W V
Sbjct: 206 -------LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD--PW-----VL 251
Query: 294 PDAKNGSRIIFTTRFKDV--AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLP 351
N +I+ TTR K V +V P E L E E+L + LP
Sbjct: 252 KAFDNQCQILLTTRDKSVTDSVMGPKHVVPVE-SGLGREKGLEIL---SLFVNMKKEDLP 307
Query: 352 PWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMD-- 409
+ I+K+C G PL + ++G LL ++ +L+ LQ+ Q++ + + D
Sbjct: 308 AEAHS----IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFK-RIRKSSSYDYE 362
Query: 410 ----ILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVA 465
+ +S + L +K + + + +D ++ + L +LW E E+V
Sbjct: 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEV- 411
Query: 466 EDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKAKEDQFLDIVR 516
ED L+E V +S++ NGK +HDL + K + Q D+ R
Sbjct: 412 EDILQEFVNKSLLFC---NRNGKSFCYYLHDLQVDFLTEKNRS-QLQDLHR 458
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 150/351 (42%), Gaps = 68/351 (19%)
Query: 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC-----AWAYVSQEYRKWEI--LQDLCKKV 244
++I GMAG GK+ LA + + + + C W + ++ + + LQ+LC +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSL---LEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR- 212
Query: 245 LGLGKADLDK---------MHMEDMKEELSNFL--QERRFIIVLDDIWEKEAWDDLKAVF 293
LD+ +++E+ K+ L + + R +++LDD+W+ W V
Sbjct: 213 -------LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD--PW-----VL 258
Query: 294 PDAKNGSRIIFTTRFKDV--AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLP 351
N +I+ TT K V +V P E L E E+L + LP
Sbjct: 259 KAFDNQCQILLTTSDKSVTDSVMGPKHVVPVE-SGLGREKGLEIL---SLFVNMKKEDLP 314
Query: 352 PWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMD-- 409
+ I+K+C G PL + ++G LL ++ +L+ LQ+ Q++ + + D
Sbjct: 315 AEAHS----IIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFK-RIRKSSSYDYE 369
Query: 410 ----ILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVA 465
+ +S + L +K + + + +D ++ + L +LW E E+V
Sbjct: 370 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEV- 418
Query: 466 EDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKAKEDQFLDIVR 516
ED L+E V +S++ NGK +HDL + K + Q D+ R
Sbjct: 419 EDILQEFVNKSLLFC---NRNGKSFCYYLHDLQVDFLTEKNRS-QLQDLHR 465
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVD 625
+L LDL + + I ++I L L L L LP+ + NL NL+ LDLS +
Sbjct: 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 626 PIPLVIWKMQQLKHVYFSEFREMVVNPPAD-ASLPNLQTLLGI 667
+P + QLK+ YF F MV P + +L NLQ LG+
Sbjct: 284 SLPAELGSCFQLKYFYF--FDNMVTTLPWEFGNLCNLQ-FLGV 323
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 546 VRSLLFFDISEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP 605
+ +L F+IS + +Y L L L G + + + I NL +LR LDL L LP
Sbjct: 231 LSNLQIFNISANIF----KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 606 SSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYF 642
+ +G+ F L+ +V +P W+ L ++ F
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLP---WEFGNLCNLQF 320
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 591 LRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYF-SEFREM 648
L+ LDL T LK LPS M L L+ L LS D + + L H+Y +++
Sbjct: 277 LQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKL 336
Query: 649 VVNPPADASLPNLQTL-LGICICETS-CVEQGLDKLLNLRELGLHGDLILHEEALCKWIY 706
+ L NLQTL L E S C L L +L+ L L H E L
Sbjct: 337 HLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLS-----HNEPLGLQSQ 391
Query: 707 NLKGLQCLKMQ------SRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNL 760
K +C +++ +R+ S QN L L+L +CFL L LP L
Sbjct: 392 AFK--ECPQLELLDLAFTRLHINAPQSPFQNLHF-LQVLNLTYCFLDTSNQHLLAGLPVL 448
Query: 761 RVLKLKQSSY 770
R L LK + +
Sbjct: 449 RHLNLKGNHF 458
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 590 HLRYLDL-RKTWLKMLPSSMGNLFNLQSLDLSST 622
++R L + TWL+M+P +MG LF +Q D + T
Sbjct: 322 NVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGT 355
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 590 HLRYLDL-RKTWLKMLPSSMGNLFNLQSLDLSST 622
++R L + TWL+M+P +MG LF +Q D + T
Sbjct: 280 NVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGT 313
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 6 VSLLIEKIATQLMEEAISFSRVRNQIEWIEGELKRMQCFL----KDADAQQDSDERVRNW 61
+S LI K+ L EE V+ IE + EL+ L + Q DS +++ W
Sbjct: 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKL--W 60
Query: 62 VADVRDVAYDTEDVIDSYIFKM 83
+VR+++Y EDV+D ++ ++
Sbjct: 61 ADEVRELSYVIEDVVDKFLVQV 82
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 555 SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSM-GNLFN 613
S P G + L +++ +E +L D L +L YL+L L+ LP + L N
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 614 LQSLDLSSTLVDPIPLVIW-KMQQLK 638
L LDLS + +P ++ K+ QLK
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLK 184
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 20/175 (11%)
Query: 570 VLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPL 629
L+L V + L HL++ + L LP + L++L L+ + +P
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 630 VIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELG 689
I + +L+ + E+ P AS + S QG L+NL+ L
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLAS------------TDASGEHQG---LVNLQSLR 189
Query: 690 LHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFC 744
L I +L I NL+ L+ LK+ R + L + P L EL L+ C
Sbjct: 190 LEWTGI---RSLPASIANLQNLKSLKI--RNSPLSALGPAIHHLPKLEELDLRGC 239
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 362 VKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNP--AKCMDILKLSYQDLP 419
V K G+P A +G W VL + + P + D+L LSY +LP
Sbjct: 21 VHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAY----GPVCPQPSDLLSLSYTELP 76
Query: 420 YYLKPCFLYIGLFPEDFEIAARKL-ILLWVAEG-FVQPRGIEPLED 463
+ C LY+ +F D ++ L +++W+ G F G EPL D
Sbjct: 77 RQSEDC-LYVNVFAPD--TPSQNLPVMVWIHGGAFYLGAGSEPLYD 119
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 362 VKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYY 421
V K G+P A +G W VL + + + P + D+L LSY +LP
Sbjct: 21 VHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYG-PICP-QPSDLLSLSYTELPRQ 78
Query: 422 LKPCFLYIGLFPEDFEIAARKL-ILLWVAEG-FVQPRGIEPLED 463
+ C LY+ +F D ++ L +++W+ G F G EPL D
Sbjct: 79 SEDC-LYVNVFAPD--TPSQNLPVMVWIHGGAFYLGAGSEPLYD 119
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 362 VKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNP--AKCMDILKLSYQDLP 419
V K G+P A +G W VL + + P + D+L LSY++LP
Sbjct: 21 VHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATVY----GPVCPQPSDLLSLSYKELP 76
Query: 420 YYLKPCFLYIGLFPEDFEIAARKL-ILLWVAEG-FVQPRGIEPLED 463
+ C LY+ +F D ++ L +++W+ G F G EPL D
Sbjct: 77 RQSEDC-LYVNVFAPD--TPSQNLPVMVWIHGGAFYLGAGSEPLYD 119
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 590 HLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLVIWK-MQQLKHVYFSEFRE 647
HL L+L + + + P + NLFNL++L L S + IPL ++ + L + SE +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 648 MVVNPPADASLPNLQTLLGICICETSCVE------QGLDKL-------LNLREL------ 688
+++ D +L L + + + V GL+ L NL +
Sbjct: 117 VIL---LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 689 GLHGDLILHEEAL---------CKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTEL 739
LHG ++L L K +Y LK L+ S Y ++ + NLT L
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI----SHWPYLDTMTPNCLYGLNLTSL 229
Query: 740 SLQFCFLTEDPLKELEKLPNLRVLKLK 766
S+ C LT P + L LR L L
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLS 256
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 502 AISKAKEDQFLDIVRGDSNARFLAKARRLA---IHFGIPSQTRKSSRVRSLLFFDISEPV 558
AI KAKE + D++ D+ R K +A I Q KS+ LL D +
Sbjct: 183 AIKKAKEQNY-DLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ 241
Query: 559 GSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKML 604
+++ + +V D+ G+ + +DS+ I L +L +KM+
Sbjct: 242 NGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMI 287
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 814 IIECMRLKIVP----SGLWPLTTLSNLKLGYMPFDFDLMAQDRRGENWY 858
+E M+L+ V S + P T ++ LK GYM D D G +W+
Sbjct: 268 FVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWF 316
>pdb|4DQ8|A Chain A, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
pdb|4DQ8|B Chain B, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
Length = 391
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 113 VNKQISRIKMRI--HDISSSRSTYGVKNIGRDGEGTSFAVDCLREKRRSYPHTSEEDIVG 170
+N S +K ++ D SR+T NI R GE +S D RR + +E+DI
Sbjct: 17 LNSGSSSLKFQLVEPDSGMSRAT---GNIERIGEESSSVPDHDAALRRVFEILAEDDIDL 73
Query: 171 LGEDMMILGNRVIHGG 186
++ +G+RV+HGG
Sbjct: 74 QSCGLVAVGHRVVHGG 89
>pdb|2KPO|A Chain A, Solution Nmr Structure Of De Novo Designed Rossmann 2x2
Fold Protein, Northeast Structural Genomics Consortium
Target Or16
pdb|2LV8|A Chain A, Solution Nmr Structure De Novo Designed Rossmann 2x2 Fold
Protein, Northeast Structural Genomics Consortium (nesg)
Target Or16
Length = 110
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 475 RSMVEPASR---KSNGKIKTIRVHDLLRELAISKAKEDQFLDIVRGDSNARFLAKARRLA 531
+ ++E A + K+N +++T++ D L++ KE Q + ++ SN L KA+ LA
Sbjct: 12 KKLIEEARKMAEKANLELRTVKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELA 71
Query: 532 IHFGIPSQTRK 542
I +TRK
Sbjct: 72 QKMEIDVRTRK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,422,394
Number of Sequences: 62578
Number of extensions: 1071300
Number of successful extensions: 2550
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2521
Number of HSP's gapped (non-prelim): 41
length of query: 866
length of database: 14,973,337
effective HSP length: 107
effective length of query: 759
effective length of database: 8,277,491
effective search space: 6282615669
effective search space used: 6282615669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)