Query 038220
Match_columns 866
No_of_seqs 438 out of 4530
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.5E-89 5.4E-94 792.1 45.9 803 3-826 2-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.6E-62 2.1E-66 596.0 46.8 677 115-842 134-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-43 2.5E-48 375.0 16.2 282 171-456 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1E-24 2.3E-29 269.7 13.6 313 525-841 118-438 (968)
5 PLN00113 leucine-rich repeat r 99.9 3.8E-24 8.2E-29 264.7 12.7 298 541-843 185-487 (968)
6 KOG0444 Cytoskeletal regulator 99.9 8.7E-26 1.9E-30 236.1 -7.0 311 524-842 54-373 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 8.4E-25 1.8E-29 228.8 -12.3 310 525-843 32-351 (1255)
8 KOG4194 Membrane glycoprotein 99.8 9.1E-22 2E-26 205.2 1.7 292 542-839 123-447 (873)
9 KOG4194 Membrane glycoprotein 99.8 1.2E-21 2.5E-26 204.4 -3.0 249 562-815 193-447 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.1E-18 4.6E-23 213.3 15.4 267 544-823 589-909 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.6E-21 3.4E-26 194.9 -11.6 273 561-844 132-541 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.9E-20 4.1E-25 187.2 -11.4 267 568-848 47-314 (565)
13 KOG0618 Serine/threonine phosp 99.6 8.6E-18 1.9E-22 185.5 -9.3 177 660-842 242-487 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 1.3E-14 2.8E-19 166.4 10.1 254 547-844 204-458 (788)
15 KOG0618 Serine/threonine phosp 99.5 2.2E-16 4.8E-21 174.5 -5.8 289 540-841 195-510 (1081)
16 PRK15370 E3 ubiquitin-protein 99.5 1.2E-14 2.6E-19 167.9 7.0 225 567-844 200-428 (754)
17 cd00116 LRR_RI Leucine-rich re 99.5 1.8E-15 3.8E-20 162.9 -4.6 257 586-842 20-318 (319)
18 KOG0617 Ras suppressor protein 99.4 2.2E-15 4.7E-20 133.7 -4.4 156 538-695 27-185 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 3.1E-13 6.7E-18 156.2 7.5 235 544-812 199-438 (754)
20 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.2E-20 132.2 -6.5 82 587-669 31-112 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.4 3E-13 6.6E-18 158.7 7.2 205 537-748 516-731 (889)
22 PRK15387 E3 ubiquitin-protein 99.4 5.2E-13 1.1E-17 153.3 8.2 240 545-825 223-463 (788)
23 PRK00411 cdc6 cell division co 99.4 2.5E-10 5.4E-15 126.3 28.5 318 163-495 27-374 (394)
24 PRK04841 transcriptional regul 99.4 5.5E-11 1.2E-15 146.9 25.8 297 164-506 12-332 (903)
25 cd00116 LRR_RI Leucine-rich re 99.3 6.2E-14 1.3E-18 150.9 -2.8 260 559-818 16-318 (319)
26 KOG4237 Extracellular matrix p 99.3 4.2E-15 9.1E-20 149.3 -11.2 98 752-851 268-366 (498)
27 TIGR02928 orc1/cdc6 family rep 99.2 8.3E-09 1.8E-13 112.9 27.9 304 164-482 13-351 (365)
28 TIGR03015 pepcterm_ATPase puta 99.2 3.1E-09 6.7E-14 110.9 22.3 181 189-379 43-242 (269)
29 PF01637 Arch_ATPase: Archaeal 99.1 8.2E-10 1.8E-14 112.8 13.1 196 168-374 1-233 (234)
30 KOG4237 Extracellular matrix p 99.1 2.2E-12 4.8E-17 130.0 -7.4 257 555-819 80-358 (498)
31 PRK00080 ruvB Holliday junctio 99.0 9.5E-09 2.1E-13 109.9 17.7 279 164-482 23-311 (328)
32 TIGR00635 ruvB Holliday juncti 99.0 6.4E-09 1.4E-13 110.6 16.0 277 166-482 4-290 (305)
33 COG2909 MalT ATP-dependent tra 99.0 6.7E-08 1.5E-12 108.2 23.0 301 165-508 18-340 (894)
34 KOG2120 SCF ubiquitin ligase, 99.0 6.6E-12 1.4E-16 121.8 -7.7 198 613-834 186-390 (419)
35 KOG3207 Beta-tubulin folding c 99.0 6.3E-11 1.4E-15 121.4 -1.1 216 578-820 110-339 (505)
36 KOG1909 Ran GTPase-activating 98.9 9.3E-11 2E-15 117.0 -2.2 248 561-819 25-310 (382)
37 KOG3207 Beta-tubulin folding c 98.9 3.1E-10 6.8E-15 116.4 1.5 163 679-842 142-312 (505)
38 PF05729 NACHT: NACHT domain 98.9 1.2E-08 2.6E-13 98.0 10.9 141 190-339 1-162 (166)
39 KOG2120 SCF ubiquitin ligase, 98.8 8.1E-11 1.8E-15 114.4 -7.1 198 590-810 186-390 (419)
40 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.7E-14 106.2 -0.1 107 679-793 303-409 (490)
41 KOG1909 Ran GTPase-activating 98.8 9.7E-10 2.1E-14 109.9 -0.9 240 584-843 25-310 (382)
42 COG3899 Predicted ATPase [Gene 98.8 1.9E-07 4.1E-12 110.9 17.9 317 167-506 1-386 (849)
43 KOG0532 Leucine-rich repeat (L 98.8 3.9E-10 8.4E-15 119.2 -4.3 156 558-720 90-245 (722)
44 PTZ00112 origin recognition co 98.7 1.9E-06 4.1E-11 97.6 22.8 301 164-482 753-1087(1164)
45 COG4886 Leucine-rich repeat (L 98.7 7.5E-09 1.6E-13 114.6 3.7 177 563-771 113-290 (394)
46 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.5E-13 96.2 4.0 84 563-648 16-101 (175)
47 KOG4341 F-box protein containi 98.7 5.9E-10 1.3E-14 113.8 -5.5 285 545-851 139-446 (483)
48 PTZ00202 tuzin; Provisional 98.7 1.4E-05 3E-10 84.1 25.9 167 163-339 259-433 (550)
49 PRK06893 DNA replication initi 98.6 4.7E-07 1E-11 91.1 14.0 150 189-375 39-203 (229)
50 COG2256 MGS1 ATPase related to 98.6 2.4E-07 5.1E-12 95.3 11.7 225 165-421 29-266 (436)
51 COG4886 Leucine-rich repeat (L 98.6 3.3E-08 7.1E-13 109.5 4.6 173 541-719 113-287 (394)
52 KOG0532 Leucine-rich repeat (L 98.6 1.3E-09 2.9E-14 115.3 -6.1 134 557-694 112-245 (722)
53 PRK13342 recombination factor 98.6 7.4E-07 1.6E-11 98.4 14.7 175 166-375 12-196 (413)
54 PF13173 AAA_14: AAA domain 98.6 1.5E-07 3.3E-12 85.3 7.2 120 190-332 3-127 (128)
55 COG1474 CDC6 Cdc6-related prot 98.5 1.9E-05 4E-10 84.5 23.3 295 165-483 16-336 (366)
56 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 98.7 -0.4 131 561-695 279-411 (490)
57 KOG2982 Uncharacterized conser 98.5 1.2E-08 2.5E-13 99.7 -1.3 84 732-815 197-287 (418)
58 PF14580 LRR_9: Leucine-rich r 98.5 1.1E-07 2.4E-12 89.6 4.4 126 541-669 16-150 (175)
59 PRK05564 DNA polymerase III su 98.5 5.8E-06 1.3E-10 87.8 17.9 177 166-373 4-188 (313)
60 PF13401 AAA_22: AAA domain; P 98.5 6.4E-07 1.4E-11 81.9 9.0 113 189-308 4-125 (131)
61 PRK04195 replication factor C 98.4 2.2E-05 4.8E-10 88.5 21.7 246 165-455 13-271 (482)
62 PRK12402 replication factor C 98.4 6.5E-06 1.4E-10 89.1 16.4 198 165-373 14-224 (337)
63 PF13191 AAA_16: AAA ATPase do 98.4 6.7E-07 1.4E-11 87.5 7.8 46 167-212 1-47 (185)
64 TIGR03420 DnaA_homol_Hda DnaA 98.4 4.5E-06 9.8E-11 84.5 13.4 167 171-376 22-202 (226)
65 PRK07003 DNA polymerase III su 98.4 1.9E-05 4E-10 89.4 19.1 197 165-375 15-221 (830)
66 PRK14961 DNA polymerase III su 98.4 1.6E-05 3.4E-10 86.1 18.0 193 165-372 15-217 (363)
67 cd00009 AAA The AAA+ (ATPases 98.4 4E-06 8.7E-11 78.4 11.8 123 169-310 1-131 (151)
68 KOG4341 F-box protein containi 98.3 1.6E-08 3.6E-13 103.4 -6.4 170 679-848 238-418 (483)
69 PLN03025 replication factor C 98.3 1.4E-05 3.1E-10 85.1 15.2 181 165-371 12-196 (319)
70 PF14516 AAA_35: AAA-like doma 98.3 0.00019 4E-09 76.6 22.8 208 163-385 8-249 (331)
71 PRK14957 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.3 16.7 183 165-375 15-221 (546)
72 PRK00440 rfc replication facto 98.2 3.7E-05 8E-10 82.5 17.4 180 165-372 16-200 (319)
73 PRK14949 DNA polymerase III su 98.2 2.2E-05 4.9E-10 90.6 16.2 195 165-373 15-218 (944)
74 cd01128 rho_factor Transcripti 98.2 2.9E-06 6.2E-11 85.5 7.8 92 190-282 17-114 (249)
75 PRK06645 DNA polymerase III su 98.2 4.7E-05 1E-09 84.7 18.1 197 165-372 20-226 (507)
76 PRK14960 DNA polymerase III su 98.2 4.4E-05 9.6E-10 85.5 17.5 195 165-373 14-217 (702)
77 PRK14963 DNA polymerase III su 98.2 3.1E-05 6.7E-10 86.6 16.5 194 165-372 13-214 (504)
78 PRK14962 DNA polymerase III su 98.2 7.5E-05 1.6E-09 82.8 19.3 200 165-379 13-223 (472)
79 PLN03150 hypothetical protein; 98.2 1.9E-06 4.1E-11 100.0 6.9 103 567-669 419-525 (623)
80 PRK14956 DNA polymerase III su 98.2 2.1E-05 4.5E-10 85.6 13.8 194 165-370 17-217 (484)
81 PRK09112 DNA polymerase III su 98.2 4.1E-05 8.9E-10 81.6 15.4 201 163-376 20-241 (351)
82 KOG2982 Uncharacterized conser 98.2 1.4E-06 2.9E-11 85.6 3.6 204 563-790 68-286 (418)
83 PF13855 LRR_8: Leucine rich r 98.2 2.3E-06 4.9E-11 66.0 4.1 56 590-645 2-59 (61)
84 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 5E-11 65.9 4.1 59 566-624 1-61 (61)
85 PRK09376 rho transcription ter 98.1 2.7E-06 5.7E-11 89.1 5.7 104 177-282 158-267 (416)
86 KOG2028 ATPase related to the 98.1 3.6E-05 7.7E-10 77.9 13.3 160 188-370 161-331 (554)
87 PRK13341 recombination factor 98.1 3E-05 6.5E-10 90.1 14.6 174 165-370 27-212 (725)
88 PRK12323 DNA polymerase III su 98.1 6.3E-05 1.4E-09 84.1 16.3 200 165-375 15-225 (700)
89 TIGR02397 dnaX_nterm DNA polym 98.1 0.00011 2.3E-09 80.2 18.2 183 165-375 13-218 (355)
90 TIGR02903 spore_lon_C ATP-depe 98.1 6.9E-05 1.5E-09 86.4 17.2 174 166-342 154-368 (615)
91 PRK07940 DNA polymerase III su 98.1 7.6E-05 1.6E-09 80.7 16.5 190 166-375 5-213 (394)
92 TIGR00678 holB DNA polymerase 98.1 9.3E-05 2E-09 72.3 15.1 89 270-370 95-186 (188)
93 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.2E-12 101.2 -2.1 237 569-821 75-319 (414)
94 PRK09087 hypothetical protein; 98.1 0.00027 5.8E-09 70.7 18.5 140 189-374 44-194 (226)
95 PRK07471 DNA polymerase III su 98.1 0.00016 3.4E-09 77.6 17.9 198 164-376 17-239 (365)
96 TIGR01242 26Sp45 26S proteasom 98.1 4.5E-05 9.8E-10 82.9 13.9 176 163-369 119-328 (364)
97 PRK08727 hypothetical protein; 98.1 0.00011 2.3E-09 74.3 15.4 146 190-372 42-201 (233)
98 PRK14964 DNA polymerase III su 98.1 0.00012 2.5E-09 80.9 16.5 176 165-372 12-214 (491)
99 PRK14955 DNA polymerase III su 98.1 6.5E-05 1.4E-09 82.4 14.6 201 165-373 15-226 (397)
100 PRK05896 DNA polymerase III su 98.0 7.1E-05 1.5E-09 83.9 14.5 199 165-377 15-223 (605)
101 PRK08691 DNA polymerase III su 98.0 0.00011 2.5E-09 83.1 16.1 195 165-373 15-218 (709)
102 PRK07994 DNA polymerase III su 98.0 0.00013 2.8E-09 83.1 16.6 191 165-373 15-218 (647)
103 PRK08084 DNA replication initi 98.0 0.00011 2.4E-09 74.3 14.5 170 166-374 23-208 (235)
104 PRK14970 DNA polymerase III su 98.0 0.00017 3.8E-09 78.7 17.2 179 165-370 16-204 (367)
105 PRK14951 DNA polymerase III su 98.0 0.00018 3.9E-09 81.8 17.4 199 165-374 15-224 (618)
106 PF05621 TniB: Bacterial TniB 98.0 0.00026 5.7E-09 71.8 16.6 194 173-370 44-256 (302)
107 PLN03150 hypothetical protein; 98.0 4.5E-06 9.8E-11 96.9 4.6 113 710-824 419-532 (623)
108 COG3903 Predicted ATPase [Gene 98.0 2.4E-05 5.2E-10 81.5 9.3 270 189-482 14-293 (414)
109 PRK14087 dnaA chromosomal repl 98.0 0.00017 3.7E-09 80.0 16.0 164 189-376 141-320 (450)
110 PRK14958 DNA polymerase III su 98.0 0.0002 4.4E-09 80.3 16.7 195 165-373 15-218 (509)
111 KOG0531 Protein phosphatase 1, 98.0 7.4E-07 1.6E-11 98.8 -2.7 224 561-797 90-319 (414)
112 PRK08903 DnaA regulatory inact 97.9 0.00014 3E-09 73.5 13.8 170 169-379 22-203 (227)
113 PRK05642 DNA replication initi 97.9 0.00022 4.7E-09 72.0 14.8 148 190-374 46-207 (234)
114 COG5238 RNA1 Ran GTPase-activa 97.9 1.7E-06 3.7E-11 83.7 -0.5 85 563-647 27-132 (388)
115 PRK14959 DNA polymerase III su 97.9 0.00034 7.4E-09 79.0 17.5 200 165-379 15-225 (624)
116 PRK14954 DNA polymerase III su 97.9 0.00022 4.7E-09 81.4 16.0 199 165-370 15-223 (620)
117 PRK09111 DNA polymerase III su 97.9 0.00031 6.7E-09 80.1 17.2 199 164-374 22-232 (598)
118 PRK07764 DNA polymerase III su 97.9 0.0003 6.4E-09 83.1 17.5 191 165-372 14-218 (824)
119 PHA02544 44 clamp loader, smal 97.9 0.00032 7E-09 75.0 16.5 148 164-337 19-170 (316)
120 KOG2543 Origin recognition com 97.9 6.7E-05 1.4E-09 76.9 10.3 171 164-339 4-192 (438)
121 PF05496 RuvB_N: Holliday junc 97.9 0.00015 3.2E-09 70.1 12.1 174 164-374 22-220 (233)
122 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3.1E-10 56.2 3.7 39 590-628 2-40 (44)
123 TIGR00767 rho transcription te 97.9 3.7E-05 8.1E-10 81.2 8.4 93 190-283 169-267 (415)
124 PRK14969 DNA polymerase III su 97.9 0.00043 9.3E-09 78.3 17.4 192 165-370 15-215 (527)
125 TIGR02880 cbbX_cfxQ probable R 97.9 0.00043 9.4E-09 72.0 15.9 133 191-342 60-210 (284)
126 PRK14950 DNA polymerase III su 97.8 0.00031 6.6E-09 81.0 15.5 196 165-374 15-220 (585)
127 PRK14952 DNA polymerase III su 97.8 0.00067 1.5E-08 76.9 17.7 199 165-377 12-222 (584)
128 TIGR00362 DnaA chromosomal rep 97.8 0.0024 5.1E-08 70.7 21.5 178 167-372 112-307 (405)
129 PF00308 Bac_DnaA: Bacterial d 97.8 0.00025 5.5E-09 70.6 12.5 179 167-373 10-206 (219)
130 CHL00181 cbbX CbbX; Provisiona 97.8 0.00076 1.6E-08 70.1 16.4 134 190-342 60-211 (287)
131 PRK14971 DNA polymerase III su 97.8 0.00078 1.7E-08 77.5 17.9 176 165-372 16-219 (614)
132 PRK03992 proteasome-activating 97.8 0.00047 1E-08 75.3 15.3 156 163-342 128-317 (389)
133 TIGR02881 spore_V_K stage V sp 97.8 0.00025 5.5E-09 73.2 12.2 157 167-342 7-193 (261)
134 KOG2227 Pre-initiation complex 97.7 0.00077 1.7E-08 71.2 15.3 212 163-379 147-376 (529)
135 PRK07133 DNA polymerase III su 97.7 0.00095 2.1E-08 76.7 17.4 188 165-372 17-216 (725)
136 PRK15386 type III secretion pr 97.7 3.8E-05 8.2E-10 81.6 5.7 62 563-629 49-112 (426)
137 PRK06305 DNA polymerase III su 97.7 0.0009 1.9E-08 74.3 16.8 173 165-370 16-217 (451)
138 PRK06620 hypothetical protein; 97.7 0.001 2.2E-08 65.9 15.5 159 164-371 15-185 (214)
139 PRK11331 5-methylcytosine-spec 97.7 6.9E-05 1.5E-09 80.6 7.5 120 165-294 174-298 (459)
140 PRK00149 dnaA chromosomal repl 97.7 0.003 6.4E-08 70.9 20.9 202 167-396 124-349 (450)
141 PRK14953 DNA polymerase III su 97.7 0.0015 3.3E-08 72.9 18.1 192 165-375 15-220 (486)
142 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0004 8.7E-09 83.1 14.1 151 165-338 186-361 (852)
143 PRK08451 DNA polymerase III su 97.7 0.0017 3.7E-08 72.6 18.0 197 165-375 13-218 (535)
144 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 54.3 2.9 40 566-605 1-40 (44)
145 KOG1859 Leucine-rich repeat pr 97.7 7.8E-07 1.7E-11 97.3 -8.3 116 674-797 178-293 (1096)
146 PRK14948 DNA polymerase III su 97.6 0.0021 4.6E-08 74.0 18.0 198 165-374 15-221 (620)
147 TIGR02639 ClpA ATP-dependent C 97.6 0.00041 8.9E-09 82.4 12.6 155 166-340 182-358 (731)
148 KOG0991 Replication factor C, 97.6 0.0013 2.7E-08 62.8 13.0 95 163-284 24-126 (333)
149 PRK15386 type III secretion pr 97.6 0.00014 3E-09 77.4 7.5 65 585-654 48-113 (426)
150 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5.1E-10 90.6 1.9 86 561-647 143-232 (699)
151 PRK14088 dnaA chromosomal repl 97.6 0.002 4.3E-08 71.5 16.7 157 189-372 130-302 (440)
152 PRK06647 DNA polymerase III su 97.6 0.0032 6.9E-08 71.6 18.3 195 165-373 15-218 (563)
153 PRK14086 dnaA chromosomal repl 97.6 0.0089 1.9E-07 67.5 21.3 155 190-372 315-485 (617)
154 PRK14965 DNA polymerase III su 97.6 0.0021 4.6E-08 73.8 16.8 196 165-375 15-221 (576)
155 COG5238 RNA1 Ran GTPase-activa 97.5 1.6E-05 3.4E-10 77.2 -0.4 234 585-818 26-314 (388)
156 PRK05707 DNA polymerase III su 97.5 0.0029 6.2E-08 67.0 16.4 96 270-375 105-203 (328)
157 PF10443 RNA12: RNA12 protein; 97.5 0.031 6.7E-07 59.7 23.2 216 171-395 1-298 (431)
158 COG1373 Predicted ATPase (AAA+ 97.5 0.004 8.6E-08 68.1 17.4 134 173-335 24-162 (398)
159 KOG0989 Replication factor C, 97.5 0.00044 9.4E-09 69.1 8.7 186 163-370 33-225 (346)
160 PF05673 DUF815: Protein of un 97.5 0.006 1.3E-07 60.1 16.4 103 163-294 24-132 (249)
161 PRK10536 hypothetical protein; 97.5 0.001 2.2E-08 66.3 11.2 133 166-311 55-215 (262)
162 TIGR03689 pup_AAA proteasome A 97.4 0.0014 3E-08 72.8 12.9 161 165-340 181-378 (512)
163 PTZ00454 26S protease regulato 97.4 0.0045 9.7E-08 67.3 16.5 155 164-341 143-330 (398)
164 smart00382 AAA ATPases associa 97.4 0.00081 1.8E-08 62.1 9.5 88 190-284 3-91 (148)
165 PRK07399 DNA polymerase III su 97.4 0.0029 6.2E-08 66.6 14.4 196 166-374 4-220 (314)
166 PRK05563 DNA polymerase III su 97.4 0.0062 1.3E-07 69.6 18.0 194 165-372 15-217 (559)
167 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0017 3.8E-08 78.4 14.1 153 166-340 173-349 (852)
168 PF00004 AAA: ATPase family as 97.4 0.00096 2.1E-08 60.8 9.2 21 192-212 1-21 (132)
169 KOG1859 Leucine-rich repeat pr 97.4 4E-06 8.8E-11 91.9 -7.6 82 562-645 183-264 (1096)
170 PTZ00361 26 proteosome regulat 97.4 0.0013 2.9E-08 71.8 11.6 154 166-342 183-369 (438)
171 COG2255 RuvB Holliday junction 97.3 0.002 4.4E-08 63.7 11.2 171 165-372 25-220 (332)
172 PRK11034 clpA ATP-dependent Cl 97.3 0.0012 2.6E-08 77.5 11.5 153 166-339 186-361 (758)
173 PRK08116 hypothetical protein; 97.3 0.0011 2.3E-08 68.3 9.9 100 190-307 115-219 (268)
174 PRK10865 protein disaggregatio 97.3 0.0014 3.1E-08 78.7 12.1 45 166-212 178-222 (857)
175 CHL00176 ftsH cell division pr 97.3 0.0044 9.4E-08 71.5 15.2 173 165-367 182-386 (638)
176 PRK12422 chromosomal replicati 97.3 0.0039 8.5E-08 68.9 14.3 152 189-368 141-306 (445)
177 CHL00095 clpC Clp protease ATP 97.3 0.00099 2.2E-08 80.2 10.4 153 166-338 179-352 (821)
178 KOG3665 ZYG-1-like serine/thre 97.2 7.2E-05 1.6E-09 86.7 -0.4 83 682-768 147-230 (699)
179 COG3267 ExeA Type II secretory 97.2 0.019 4E-07 56.5 16.0 182 189-378 51-248 (269)
180 PF04665 Pox_A32: Poxvirus A32 97.2 0.0031 6.7E-08 62.6 11.0 36 190-227 14-49 (241)
181 PRK08118 topology modulation p 97.2 0.00019 4.2E-09 68.1 2.4 35 190-224 2-37 (167)
182 KOG1947 Leucine rich repeat pr 97.1 3.7E-05 8.1E-10 87.9 -4.0 165 658-843 268-439 (482)
183 COG2884 FtsE Predicted ATPase 97.1 0.0026 5.6E-08 59.2 8.6 60 257-316 141-204 (223)
184 TIGR01241 FtsH_fam ATP-depende 97.1 0.0093 2E-07 67.8 15.2 176 163-368 52-259 (495)
185 KOG4579 Leucine-rich repeat (L 97.1 0.0001 2.2E-09 64.3 -0.6 80 566-645 53-133 (177)
186 KOG0741 AAA+-type ATPase [Post 97.1 0.0085 1.8E-07 64.3 13.3 145 188-365 537-704 (744)
187 PRK08769 DNA polymerase III su 97.1 0.022 4.7E-07 59.8 16.4 95 270-376 112-209 (319)
188 PRK08181 transposase; Validate 97.1 0.0028 6.2E-08 64.8 9.7 98 190-308 107-208 (269)
189 PRK08058 DNA polymerase III su 97.0 0.016 3.4E-07 61.9 15.5 164 167-338 6-180 (329)
190 TIGR00763 lon ATP-dependent pr 97.0 0.042 9E-07 66.0 20.3 48 165-212 319-370 (775)
191 KOG1947 Leucine rich repeat pr 97.0 5.8E-05 1.3E-09 86.3 -3.8 172 657-848 241-418 (482)
192 COG0593 DnaA ATPase involved i 97.0 0.023 5E-07 60.9 15.9 159 165-344 87-261 (408)
193 TIGR02639 ClpA ATP-dependent C 97.0 0.024 5.2E-07 67.6 18.0 115 166-294 454-578 (731)
194 TIGR02640 gas_vesic_GvpN gas v 96.9 0.028 6.1E-07 57.9 15.9 55 174-237 10-64 (262)
195 PRK06871 DNA polymerase III su 96.9 0.043 9.3E-07 57.8 17.2 174 175-372 11-200 (325)
196 KOG4579 Leucine-rich repeat (L 96.9 9.1E-05 2E-09 64.6 -2.1 86 546-631 55-142 (177)
197 TIGR00602 rad24 checkpoint pro 96.9 0.0058 1.3E-07 69.9 11.6 50 163-212 81-133 (637)
198 PRK07261 topology modulation p 96.9 0.0021 4.5E-08 61.4 6.8 66 191-282 2-68 (171)
199 TIGR03346 chaperone_ClpB ATP-d 96.9 0.041 9E-07 66.7 19.1 119 166-294 565-692 (852)
200 PRK12377 putative replication 96.9 0.0037 7.9E-08 63.1 8.5 74 189-282 101-174 (248)
201 PRK10787 DNA-binding ATP-depen 96.9 0.038 8.2E-07 65.7 18.0 47 165-211 321-371 (784)
202 PRK07952 DNA replication prote 96.9 0.0053 1.1E-07 61.8 9.3 114 175-307 85-203 (244)
203 PRK06526 transposase; Provisio 96.8 0.002 4.4E-08 65.5 6.3 23 190-212 99-121 (254)
204 PF02562 PhoH: PhoH-like prote 96.8 0.00072 1.6E-08 65.5 2.8 133 170-311 4-158 (205)
205 KOG1644 U2-associated snRNP A' 96.8 0.0009 2E-08 62.7 3.2 102 590-693 43-150 (233)
206 KOG0733 Nuclear AAA ATPase (VC 96.8 0.026 5.7E-07 61.9 14.3 155 165-342 189-376 (802)
207 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0061 1.3E-07 73.1 10.7 121 165-295 565-694 (852)
208 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0036 7.8E-08 63.5 7.4 91 190-282 70-174 (274)
209 PRK12608 transcription termina 96.8 0.0063 1.4E-07 64.3 9.2 106 174-281 119-230 (380)
210 KOG2228 Origin recognition com 96.7 0.02 4.4E-07 58.3 12.2 173 166-340 24-219 (408)
211 PHA00729 NTP-binding motif con 96.7 0.0094 2E-07 58.5 9.2 33 178-212 8-40 (226)
212 KOG0735 AAA+-type ATPase [Post 96.7 0.041 8.9E-07 61.5 14.8 98 165-281 407-504 (952)
213 PRK09361 radB DNA repair and r 96.7 0.0067 1.4E-07 61.2 8.5 52 181-235 15-66 (225)
214 PRK06090 DNA polymerase III su 96.7 0.068 1.5E-06 56.1 16.0 174 174-375 11-201 (319)
215 TIGR02237 recomb_radB DNA repa 96.6 0.0053 1.2E-07 61.1 7.6 54 182-238 5-58 (209)
216 PRK07993 DNA polymerase III su 96.6 0.03 6.5E-07 59.5 13.5 178 174-373 10-202 (334)
217 PRK09183 transposase/IS protei 96.6 0.0057 1.2E-07 62.7 7.8 22 190-211 103-124 (259)
218 PRK08939 primosomal protein Dn 96.6 0.0073 1.6E-07 63.3 8.7 117 170-307 135-259 (306)
219 TIGR01243 CDC48 AAA family ATP 96.6 0.019 4E-07 68.7 13.1 49 164-212 176-235 (733)
220 PRK10865 protein disaggregatio 96.6 0.014 3.1E-07 70.3 12.0 119 165-294 567-695 (857)
221 cd01120 RecA-like_NTPases RecA 96.6 0.011 2.4E-07 56.0 9.3 40 191-232 1-40 (165)
222 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0016 3.5E-08 68.3 3.6 46 167-212 52-101 (361)
223 CHL00095 clpC Clp protease ATP 96.5 0.018 4E-07 69.5 12.5 119 166-295 509-637 (821)
224 PRK06921 hypothetical protein; 96.5 0.0074 1.6E-07 62.0 7.9 37 189-227 117-154 (266)
225 TIGR01243 CDC48 AAA family ATP 96.5 0.064 1.4E-06 64.2 16.9 154 165-341 452-636 (733)
226 PF13207 AAA_17: AAA domain; P 96.5 0.0018 3.9E-08 58.0 2.9 21 191-211 1-21 (121)
227 KOG1644 U2-associated snRNP A' 96.5 0.0033 7.2E-08 59.0 4.6 11 734-744 88-98 (233)
228 COG1223 Predicted ATPase (AAA+ 96.5 0.038 8.2E-07 54.1 11.8 157 163-343 118-300 (368)
229 COG1136 SalX ABC-type antimicr 96.5 0.031 6.7E-07 54.9 11.4 60 257-316 146-210 (226)
230 PF07693 KAP_NTPase: KAP famil 96.4 0.1 2.3E-06 55.9 16.7 41 172-212 2-43 (325)
231 PF13177 DNA_pol3_delta2: DNA 96.4 0.028 6.1E-07 53.1 10.7 118 170-310 1-143 (162)
232 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.021 4.6E-07 56.9 10.1 120 190-311 31-201 (254)
233 PTZ00494 tuzin-like protein; P 96.4 0.77 1.7E-05 49.2 21.7 167 163-339 368-543 (664)
234 cd01393 recA_like RecA is a b 96.4 0.022 4.8E-07 57.5 10.7 97 182-281 12-124 (226)
235 COG1875 NYN ribonuclease and A 96.4 0.007 1.5E-07 62.2 6.6 139 168-311 226-390 (436)
236 cd01394 radB RadB. The archaea 96.4 0.015 3.2E-07 58.4 9.1 51 180-232 10-60 (218)
237 COG4608 AppF ABC-type oligopep 96.4 0.02 4.3E-07 57.2 9.5 144 190-336 40-198 (268)
238 COG0470 HolB ATPase involved i 96.4 0.038 8.2E-07 59.4 12.8 141 167-326 2-167 (325)
239 COG2607 Predicted ATPase (AAA+ 96.4 0.026 5.7E-07 54.7 9.8 117 163-308 57-182 (287)
240 COG1222 RPT1 ATP-dependent 26S 96.4 0.12 2.6E-06 53.4 15.1 200 166-396 151-392 (406)
241 PF00448 SRP54: SRP54-type pro 96.4 0.011 2.5E-07 57.5 7.7 56 189-246 1-57 (196)
242 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.019 4.2E-07 58.3 9.9 49 188-236 18-70 (235)
243 CHL00195 ycf46 Ycf46; Provisio 96.3 0.13 2.8E-06 57.5 16.4 154 166-342 228-407 (489)
244 PRK06835 DNA replication prote 96.3 0.019 4.1E-07 60.7 9.3 36 190-227 184-219 (329)
245 KOG2035 Replication factor C, 96.3 0.16 3.6E-06 50.4 14.8 229 167-418 14-282 (351)
246 COG0542 clpA ATP-binding subun 96.3 0.014 2.9E-07 67.5 8.7 117 165-295 490-619 (786)
247 PF08423 Rad51: Rad51; InterP 96.3 0.014 3.1E-07 59.6 8.1 55 189-244 38-96 (256)
248 cd03214 ABC_Iron-Siderophores_ 96.2 0.033 7.1E-07 53.8 10.2 120 190-312 26-161 (180)
249 cd03247 ABCC_cytochrome_bd The 96.2 0.026 5.6E-07 54.5 9.1 118 190-313 29-161 (178)
250 PF13671 AAA_33: AAA domain; P 96.2 0.0091 2E-07 55.2 5.7 21 191-211 1-21 (143)
251 PRK06696 uridine kinase; Valid 96.2 0.0059 1.3E-07 61.3 4.7 41 171-211 3-44 (223)
252 PRK15455 PrkA family serine pr 96.2 0.0047 1E-07 68.3 4.2 45 167-211 77-125 (644)
253 PRK06964 DNA polymerase III su 96.2 0.11 2.5E-06 55.0 14.4 92 270-375 131-225 (342)
254 PF01695 IstB_IS21: IstB-like 96.1 0.0039 8.5E-08 59.8 3.1 36 190-227 48-83 (178)
255 cd03238 ABC_UvrA The excision 96.1 0.04 8.6E-07 52.7 9.9 114 190-313 22-153 (176)
256 PRK07667 uridine kinase; Provi 96.1 0.0064 1.4E-07 59.5 4.6 37 175-211 3-39 (193)
257 KOG0734 AAA+-type ATPase conta 96.1 0.024 5.2E-07 61.1 9.0 47 166-212 304-360 (752)
258 PRK05800 cobU adenosylcobinami 96.1 0.0063 1.4E-07 57.8 4.1 82 191-280 3-85 (170)
259 KOG1514 Origin recognition com 96.1 0.28 6E-06 55.3 17.1 199 166-376 396-622 (767)
260 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.052 1.1E-06 50.2 10.1 100 190-312 27-130 (144)
261 PRK04296 thymidine kinase; Pro 96.0 0.0088 1.9E-07 58.3 5.1 113 190-310 3-117 (190)
262 PRK06067 flagellar accessory p 96.0 0.032 7E-07 56.6 9.4 96 181-281 17-130 (234)
263 PRK05541 adenylylsulfate kinas 96.0 0.015 3.2E-07 56.1 6.6 35 189-225 7-41 (176)
264 PRK04132 replication factor C 96.0 0.18 3.9E-06 59.8 16.2 151 197-372 574-728 (846)
265 PRK11034 clpA ATP-dependent Cl 96.0 0.041 8.9E-07 64.9 11.1 115 166-294 458-582 (758)
266 PRK04301 radA DNA repair and r 96.0 0.038 8.3E-07 58.8 10.0 58 181-238 94-155 (317)
267 PF14532 Sigma54_activ_2: Sigm 96.0 0.0071 1.5E-07 55.5 3.9 44 169-212 1-44 (138)
268 PF00485 PRK: Phosphoribulokin 96.0 0.03 6.5E-07 54.8 8.5 82 191-275 1-87 (194)
269 cd00983 recA RecA is a bacter 96.0 0.023 5E-07 59.4 8.0 88 187-281 53-143 (325)
270 cd03223 ABCD_peroxisomal_ALDP 95.9 0.076 1.6E-06 50.5 11.0 114 190-313 28-152 (166)
271 KOG0730 AAA+-type ATPase [Post 95.9 0.16 3.5E-06 56.7 14.6 158 164-344 432-619 (693)
272 KOG0744 AAA+-type ATPase [Post 95.9 0.025 5.5E-07 57.1 7.6 81 189-282 177-261 (423)
273 COG0466 Lon ATP-dependent Lon 95.9 0.057 1.2E-06 60.8 11.1 161 165-340 322-508 (782)
274 COG1484 DnaC DNA replication p 95.9 0.037 7.9E-07 56.4 8.9 74 189-282 105-178 (254)
275 TIGR02858 spore_III_AA stage I 95.9 0.13 2.7E-06 52.9 12.7 131 175-313 98-233 (270)
276 COG0542 clpA ATP-binding subun 95.8 0.033 7.1E-07 64.4 9.2 152 165-338 169-344 (786)
277 COG4618 ArpD ABC-type protease 95.8 0.084 1.8E-06 57.0 11.5 22 190-211 363-384 (580)
278 cd03115 SRP The signal recogni 95.8 0.061 1.3E-06 51.6 9.9 21 191-211 2-22 (173)
279 PLN03187 meiotic recombination 95.8 0.037 8.1E-07 58.6 8.9 64 181-245 118-185 (344)
280 cd01131 PilT Pilus retraction 95.8 0.023 5.1E-07 55.7 7.0 110 190-311 2-111 (198)
281 TIGR02902 spore_lonB ATP-depen 95.8 0.079 1.7E-06 60.4 12.1 44 166-211 65-108 (531)
282 TIGR02012 tigrfam_recA protein 95.8 0.03 6.5E-07 58.6 7.9 88 187-281 53-143 (321)
283 TIGR02239 recomb_RAD51 DNA rep 95.8 0.039 8.5E-07 58.2 8.9 64 180-244 87-154 (316)
284 cd03222 ABC_RNaseL_inhibitor T 95.7 0.1 2.2E-06 50.0 10.8 23 190-212 26-48 (177)
285 COG0468 RecA RecA/RadA recombi 95.7 0.054 1.2E-06 55.3 9.3 97 182-281 53-151 (279)
286 COG2812 DnaX DNA polymerase II 95.7 0.06 1.3E-06 59.7 10.3 191 166-370 16-215 (515)
287 COG1618 Predicted nucleotide k 95.7 0.008 1.7E-07 54.4 2.9 22 190-211 6-27 (179)
288 PLN03186 DNA repair protein RA 95.7 0.058 1.3E-06 57.3 9.8 65 180-245 114-182 (342)
289 cd03216 ABC_Carb_Monos_I This 95.7 0.038 8.2E-07 52.4 7.7 111 190-311 27-144 (163)
290 PRK09354 recA recombinase A; P 95.7 0.04 8.6E-07 58.2 8.5 91 184-281 55-148 (349)
291 PRK08699 DNA polymerase III su 95.7 0.1 2.2E-06 55.3 11.7 70 270-339 112-184 (325)
292 COG0396 sufC Cysteine desulfur 95.7 0.13 2.8E-06 49.9 11.0 58 261-318 152-213 (251)
293 PRK05973 replicative DNA helic 95.7 0.12 2.6E-06 51.6 11.4 147 189-344 64-228 (237)
294 COG1126 GlnQ ABC-type polar am 95.7 0.16 3.5E-06 48.8 11.4 122 190-314 29-201 (240)
295 cd00544 CobU Adenosylcobinamid 95.6 0.053 1.1E-06 51.4 8.2 80 192-280 2-82 (169)
296 COG1124 DppF ABC-type dipeptid 95.6 0.17 3.7E-06 49.6 11.6 53 263-317 151-210 (252)
297 PRK11889 flhF flagellar biosyn 95.6 0.2 4.3E-06 53.5 13.0 101 188-294 240-347 (436)
298 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.044 9.6E-07 53.1 7.9 21 191-211 1-21 (183)
299 cd03230 ABC_DR_subfamily_A Thi 95.5 0.068 1.5E-06 51.3 8.9 118 190-313 27-159 (173)
300 PRK00771 signal recognition pa 95.5 0.07 1.5E-06 58.6 10.0 25 188-212 94-118 (437)
301 cd03228 ABCC_MRP_Like The MRP 95.5 0.12 2.6E-06 49.4 10.4 117 190-313 29-159 (171)
302 KOG2004 Mitochondrial ATP-depe 95.5 0.29 6.2E-06 55.2 14.2 104 164-282 409-516 (906)
303 PRK06002 fliI flagellum-specif 95.4 0.046 9.9E-07 59.6 8.1 90 190-282 166-265 (450)
304 PRK14974 cell division protein 95.4 0.1 2.2E-06 55.2 10.5 24 188-211 139-162 (336)
305 PF00560 LRR_1: Leucine Rich R 95.4 0.0061 1.3E-07 35.5 0.8 19 591-609 2-20 (22)
306 PRK10867 signal recognition pa 95.4 0.066 1.4E-06 58.7 9.3 24 188-211 99-122 (433)
307 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.085 1.8E-06 52.3 9.4 23 189-211 29-51 (213)
308 PRK05703 flhF flagellar biosyn 95.4 0.19 4.1E-06 55.5 12.8 40 190-229 222-261 (424)
309 cd03246 ABCC_Protease_Secretio 95.4 0.083 1.8E-06 50.6 8.9 117 190-313 29-160 (173)
310 PRK13531 regulatory ATPase Rav 95.4 0.017 3.6E-07 63.3 4.4 42 166-211 20-61 (498)
311 PRK09270 nucleoside triphospha 95.4 0.02 4.3E-07 57.8 4.8 25 187-211 31-55 (229)
312 COG4088 Predicted nucleotide k 95.3 0.074 1.6E-06 50.3 7.9 22 190-211 2-23 (261)
313 PRK13540 cytochrome c biogenes 95.3 0.16 3.4E-06 50.1 11.0 23 190-212 28-50 (200)
314 TIGR00959 ffh signal recogniti 95.3 0.1 2.2E-06 57.2 10.4 23 189-211 99-121 (428)
315 PF13238 AAA_18: AAA domain; P 95.3 0.012 2.5E-07 53.3 2.7 21 192-212 1-21 (129)
316 PF12061 DUF3542: Protein of u 95.3 0.037 8.1E-07 55.4 6.2 77 4-80 296-373 (402)
317 PF13604 AAA_30: AAA domain; P 95.3 0.071 1.5E-06 52.2 8.3 110 175-308 6-130 (196)
318 KOG0731 AAA+-type ATPase conta 95.3 0.43 9.3E-06 55.1 15.4 175 165-369 310-518 (774)
319 KOG2123 Uncharacterized conser 95.3 0.0011 2.5E-08 64.9 -4.2 77 545-622 20-98 (388)
320 KOG1969 DNA replication checkp 95.3 0.054 1.2E-06 60.9 7.9 73 188-283 325-399 (877)
321 COG1120 FepC ABC-type cobalami 95.2 0.21 4.5E-06 50.3 11.4 22 190-211 29-50 (258)
322 cd03229 ABC_Class3 This class 95.2 0.084 1.8E-06 50.9 8.5 23 190-212 27-49 (178)
323 cd03263 ABC_subfamily_A The AB 95.2 0.18 4E-06 50.5 11.4 23 190-212 29-51 (220)
324 cd03269 ABC_putative_ATPase Th 95.2 0.19 4.1E-06 50.0 11.3 23 190-212 27-49 (210)
325 PF08433 KTI12: Chromatin asso 95.2 0.048 1.1E-06 55.9 7.1 23 190-212 2-24 (270)
326 cd01135 V_A-ATPase_B V/A-type 95.2 0.073 1.6E-06 54.0 8.1 93 190-282 70-177 (276)
327 KOG0733 Nuclear AAA ATPase (VC 95.2 0.4 8.6E-06 53.1 14.0 130 189-341 545-693 (802)
328 PRK08972 fliI flagellum-specif 95.2 0.058 1.3E-06 58.5 7.9 89 190-282 163-263 (444)
329 PRK13539 cytochrome c biogenes 95.2 0.21 4.6E-06 49.4 11.5 23 190-212 29-51 (207)
330 TIGR02238 recomb_DMC1 meiotic 95.2 0.099 2.2E-06 55.0 9.4 65 180-245 87-155 (313)
331 COG1116 TauB ABC-type nitrate/ 95.2 0.16 3.4E-06 50.3 10.0 22 190-211 30-51 (248)
332 PTZ00035 Rad51 protein; Provis 95.2 0.17 3.6E-06 54.0 11.2 65 179-244 108-176 (337)
333 COG0572 Udk Uridine kinase [Nu 95.2 0.036 7.7E-07 53.8 5.5 79 188-272 7-85 (218)
334 KOG2123 Uncharacterized conser 95.1 0.0012 2.6E-08 64.8 -4.6 101 565-667 18-125 (388)
335 cd03235 ABC_Metallic_Cations A 95.1 0.2 4.3E-06 50.0 11.1 23 190-212 26-48 (213)
336 cd02019 NK Nucleoside/nucleoti 95.1 0.015 3.2E-07 45.8 2.4 22 191-212 1-22 (69)
337 KOG2739 Leucine-rich acidic nu 95.1 0.0095 2.1E-07 58.6 1.5 61 734-794 65-127 (260)
338 PRK10463 hydrogenase nickel in 95.1 0.093 2E-06 53.8 8.6 89 188-282 103-195 (290)
339 PRK11248 tauB taurine transpor 95.1 0.24 5.1E-06 50.9 11.8 23 190-212 28-50 (255)
340 TIGR00150 HI0065_YjeE ATPase, 95.1 0.027 5.9E-07 50.5 4.2 39 174-212 7-45 (133)
341 KOG1532 GTPase XAB1, interacts 95.1 0.083 1.8E-06 52.1 7.6 93 187-280 17-124 (366)
342 TIGR00235 udk uridine kinase. 95.0 0.02 4.3E-07 56.8 3.6 25 188-212 5-29 (207)
343 PRK06547 hypothetical protein; 95.0 0.03 6.4E-07 53.3 4.6 25 188-212 14-38 (172)
344 PF12775 AAA_7: P-loop contain 95.0 0.03 6.6E-07 57.7 4.9 34 176-212 23-56 (272)
345 cd03264 ABC_drug_resistance_li 95.0 0.2 4.4E-06 49.8 10.7 22 191-212 27-48 (211)
346 PRK08233 hypothetical protein; 95.0 0.019 4E-07 55.7 3.2 24 189-212 3-26 (182)
347 PRK11608 pspF phage shock prot 95.0 0.053 1.2E-06 57.8 6.9 46 166-211 6-51 (326)
348 PRK08533 flagellar accessory p 95.0 0.13 2.8E-06 51.7 9.3 48 189-240 24-71 (230)
349 TIGR00390 hslU ATP-dependent p 95.0 0.056 1.2E-06 58.0 6.8 77 166-244 12-104 (441)
350 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.033 7.1E-07 54.7 4.8 120 190-316 30-158 (204)
351 PRK15429 formate hydrogenlyase 94.9 0.082 1.8E-06 62.9 9.0 47 166-212 376-422 (686)
352 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.13 2.8E-06 47.8 8.4 115 190-310 3-139 (159)
353 PF05659 RPW8: Arabidopsis bro 94.9 0.52 1.1E-05 43.2 12.2 107 3-129 8-115 (147)
354 TIGR03499 FlhF flagellar biosy 94.9 0.082 1.8E-06 55.0 8.0 40 189-228 194-233 (282)
355 TIGR01277 thiQ thiamine ABC tr 94.9 0.25 5.3E-06 49.3 11.2 23 190-212 25-47 (213)
356 PRK05480 uridine/cytidine kina 94.9 0.02 4.2E-07 57.0 3.2 25 188-212 5-29 (209)
357 PTZ00301 uridine kinase; Provi 94.9 0.024 5.3E-07 55.8 3.8 23 189-211 3-25 (210)
358 PLN00020 ribulose bisphosphate 94.9 0.037 8E-07 58.0 5.2 25 188-212 147-171 (413)
359 PRK08927 fliI flagellum-specif 94.9 0.082 1.8E-06 57.6 8.1 90 189-282 158-259 (442)
360 PRK12597 F0F1 ATP synthase sub 94.9 0.061 1.3E-06 59.1 7.1 91 190-281 144-247 (461)
361 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.15 3.2E-06 51.8 9.5 57 180-240 12-68 (237)
362 COG1102 Cmk Cytidylate kinase 94.9 0.039 8.4E-07 50.1 4.5 44 191-247 2-45 (179)
363 PRK09280 F0F1 ATP synthase sub 94.8 0.058 1.3E-06 59.1 6.7 92 190-282 145-249 (463)
364 PRK14722 flhF flagellar biosyn 94.8 0.18 3.8E-06 54.1 10.3 88 190-282 138-226 (374)
365 TIGR00064 ftsY signal recognit 94.8 0.16 3.5E-06 52.4 9.7 39 188-228 71-109 (272)
366 COG1428 Deoxynucleoside kinase 94.8 0.019 4.1E-07 54.9 2.6 24 189-212 4-27 (216)
367 COG1419 FlhF Flagellar GTP-bin 94.8 0.11 2.3E-06 55.3 8.3 40 189-229 203-243 (407)
368 cd01121 Sms Sms (bacterial rad 94.8 0.096 2.1E-06 56.5 8.2 93 180-280 73-167 (372)
369 cd03231 ABC_CcmA_heme_exporter 94.8 0.24 5.2E-06 48.8 10.5 23 190-212 27-49 (201)
370 PRK06762 hypothetical protein; 94.8 0.023 4.9E-07 54.2 3.1 23 190-212 3-25 (166)
371 TIGR03740 galliderm_ABC gallid 94.8 0.23 4.9E-06 49.9 10.5 23 190-212 27-49 (223)
372 PRK07132 DNA polymerase III su 94.7 1.6 3.4E-05 45.6 16.7 152 189-375 18-185 (299)
373 KOG2739 Leucine-rich acidic nu 94.7 0.012 2.6E-07 57.9 1.1 81 586-669 40-126 (260)
374 COG2842 Uncharacterized ATPase 94.7 0.31 6.7E-06 49.4 10.9 119 165-295 71-191 (297)
375 KOG0727 26S proteasome regulat 94.7 0.54 1.2E-05 45.9 12.0 47 166-212 155-212 (408)
376 TIGR02974 phageshock_pspF psp 94.7 0.14 3E-06 54.6 9.0 45 168-212 1-45 (329)
377 PRK08149 ATP synthase SpaL; Va 94.7 0.11 2.4E-06 56.6 8.3 89 190-282 152-252 (428)
378 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.2 4.3E-06 51.1 9.9 23 190-212 26-48 (246)
379 PTZ00185 ATPase alpha subunit; 94.7 0.12 2.6E-06 56.7 8.5 93 190-282 190-300 (574)
380 PRK12723 flagellar biosynthesi 94.7 0.49 1.1E-05 51.2 13.2 101 188-294 173-281 (388)
381 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.27 5.9E-06 49.4 10.7 23 190-212 49-71 (224)
382 PRK11247 ssuB aliphatic sulfon 94.6 0.39 8.4E-06 49.3 11.9 23 190-212 39-61 (257)
383 TIGR03522 GldA_ABC_ATP gliding 94.6 0.31 6.6E-06 51.5 11.5 23 190-212 29-51 (301)
384 TIGR03574 selen_PSTK L-seryl-t 94.6 0.13 2.9E-06 52.6 8.6 22 191-212 1-22 (249)
385 cd01132 F1_ATPase_alpha F1 ATP 94.6 0.16 3.5E-06 51.6 8.8 99 190-292 70-183 (274)
386 KOG0924 mRNA splicing factor A 94.6 0.2 4.3E-06 55.7 9.9 124 176-309 362-510 (1042)
387 TIGR01817 nifA Nif-specific re 94.6 0.18 4E-06 58.0 10.5 49 164-212 194-242 (534)
388 PF00158 Sigma54_activat: Sigm 94.6 0.088 1.9E-06 49.9 6.5 45 168-212 1-45 (168)
389 TIGR03305 alt_F1F0_F1_bet alte 94.6 0.076 1.6E-06 58.0 6.8 92 190-282 139-243 (449)
390 PF13481 AAA_25: AAA domain; P 94.6 0.053 1.2E-06 53.1 5.3 89 191-281 34-151 (193)
391 PF00006 ATP-synt_ab: ATP synt 94.5 0.09 1.9E-06 51.8 6.7 47 190-240 16-63 (215)
392 COG0467 RAD55 RecA-superfamily 94.5 0.075 1.6E-06 54.8 6.5 50 187-240 21-70 (260)
393 COG2274 SunT ABC-type bacterio 94.5 0.24 5.2E-06 58.0 11.2 22 190-211 500-521 (709)
394 cd01122 GP4d_helicase GP4d_hel 94.5 0.37 8E-06 50.1 11.7 54 190-246 31-84 (271)
395 PRK03839 putative kinase; Prov 94.5 0.027 5.8E-07 54.5 2.9 22 191-212 2-23 (180)
396 PRK10733 hflB ATP-dependent me 94.5 0.28 6E-06 57.5 11.6 154 166-342 152-337 (644)
397 TIGR01069 mutS2 MutS2 family p 94.5 0.025 5.3E-07 67.1 3.0 29 54-82 144-172 (771)
398 PRK09544 znuC high-affinity zi 94.5 0.27 5.8E-06 50.4 10.3 23 190-212 31-53 (251)
399 cd01136 ATPase_flagellum-secre 94.5 0.15 3.3E-06 53.5 8.5 89 190-282 70-170 (326)
400 PF07728 AAA_5: AAA domain (dy 94.4 0.06 1.3E-06 49.5 5.0 42 192-238 2-43 (139)
401 cd02027 APSK Adenosine 5'-phos 94.4 0.27 5.9E-06 45.6 9.4 21 191-211 1-21 (149)
402 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.48 1E-05 46.9 11.8 22 190-211 35-56 (207)
403 PRK05922 type III secretion sy 94.4 0.15 3.3E-06 55.5 8.7 89 190-282 158-258 (434)
404 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.31 6.6E-06 49.2 10.5 41 188-230 19-59 (229)
405 PRK13650 cbiO cobalt transport 94.4 0.27 5.7E-06 51.3 10.3 23 190-212 34-56 (279)
406 TIGR02868 CydC thiol reductant 94.4 0.29 6.4E-06 56.5 11.7 22 190-211 362-383 (529)
407 PRK07594 type III secretion sy 94.4 0.13 2.7E-06 56.2 7.9 89 190-282 156-256 (433)
408 PF03205 MobB: Molybdopterin g 94.4 0.042 9.1E-07 50.3 3.7 39 190-229 1-39 (140)
409 PRK05022 anaerobic nitric oxid 94.4 0.15 3.2E-06 58.2 9.0 64 165-230 186-249 (509)
410 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.15 3.3E-06 47.9 7.7 116 190-314 26-145 (157)
411 COG3840 ThiQ ABC-type thiamine 94.3 0.61 1.3E-05 43.6 10.9 22 190-211 26-47 (231)
412 PRK13765 ATP-dependent proteas 94.3 0.047 1E-06 62.9 4.8 77 164-246 29-105 (637)
413 PRK13543 cytochrome c biogenes 94.3 0.48 1E-05 47.2 11.6 23 190-212 38-60 (214)
414 PF06309 Torsin: Torsin; Inte 94.3 0.064 1.4E-06 47.1 4.5 47 166-212 25-76 (127)
415 PRK04040 adenylate kinase; Pro 94.3 0.033 7.1E-07 54.0 3.0 23 189-211 2-24 (188)
416 PRK06936 type III secretion sy 94.3 0.14 3E-06 55.9 7.9 38 190-231 163-200 (439)
417 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.1 2.2E-06 53.6 6.8 40 188-229 35-74 (259)
418 PRK00625 shikimate kinase; Pro 94.3 0.03 6.6E-07 53.3 2.6 22 191-212 2-23 (173)
419 PRK14721 flhF flagellar biosyn 94.3 0.52 1.1E-05 51.5 12.3 23 189-211 191-213 (420)
420 PRK05201 hslU ATP-dependent pr 94.3 0.087 1.9E-06 56.6 6.3 78 165-244 14-107 (443)
421 TIGR01360 aden_kin_iso1 adenyl 94.3 0.033 7.1E-07 54.3 3.0 23 189-211 3-25 (188)
422 PRK12724 flagellar biosynthesi 94.3 0.2 4.3E-06 54.2 8.9 23 189-211 223-245 (432)
423 KOG0728 26S proteasome regulat 94.2 3.7 8E-05 40.3 16.4 150 167-340 147-331 (404)
424 cd03243 ABC_MutS_homologs The 94.2 0.042 9.2E-07 54.2 3.7 22 190-211 30-51 (202)
425 TIGR03498 FliI_clade3 flagella 94.2 0.11 2.4E-06 56.6 7.1 23 190-212 141-163 (418)
426 PF07726 AAA_3: ATPase family 94.2 0.023 5E-07 50.0 1.5 27 192-220 2-28 (131)
427 cd03233 ABC_PDR_domain1 The pl 94.2 0.49 1.1E-05 46.6 11.3 23 190-212 34-56 (202)
428 PTZ00088 adenylate kinase 1; P 94.2 0.063 1.4E-06 53.7 4.9 20 192-211 9-28 (229)
429 COG1066 Sms Predicted ATP-depe 94.2 0.15 3.2E-06 53.9 7.6 98 176-282 80-179 (456)
430 TIGR02322 phosphon_PhnN phosph 94.2 0.035 7.5E-07 53.7 2.9 23 190-212 2-24 (179)
431 PF01583 APS_kinase: Adenylyls 94.2 0.049 1.1E-06 50.3 3.7 36 189-226 2-37 (156)
432 PF03308 ArgK: ArgK protein; 94.2 0.041 8.9E-07 54.7 3.4 65 174-238 14-78 (266)
433 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.051 1.1E-06 56.7 4.2 47 165-211 60-110 (358)
434 PRK14738 gmk guanylate kinase; 94.2 0.04 8.8E-07 54.4 3.4 31 181-211 5-35 (206)
435 PRK13647 cbiO cobalt transport 94.2 0.36 7.8E-06 50.2 10.7 23 190-212 32-54 (274)
436 cd03213 ABCG_EPDR ABCG transpo 94.2 0.36 7.7E-06 47.2 10.1 23 190-212 36-58 (194)
437 PRK00279 adk adenylate kinase; 94.1 0.26 5.7E-06 49.1 9.3 21 191-211 2-22 (215)
438 PRK04328 hypothetical protein; 94.1 0.15 3.3E-06 52.0 7.6 41 188-230 22-62 (249)
439 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.37 7.9E-06 49.4 10.4 23 190-212 27-49 (255)
440 smart00534 MUTSac ATPase domai 94.1 0.038 8.3E-07 53.6 3.1 21 191-211 1-21 (185)
441 PF06745 KaiC: KaiC; InterPro 94.1 0.079 1.7E-06 53.4 5.5 88 189-280 19-124 (226)
442 cd01130 VirB11-like_ATPase Typ 94.1 0.057 1.2E-06 52.4 4.2 109 174-292 13-121 (186)
443 cd00984 DnaB_C DnaB helicase C 94.1 0.21 4.6E-06 50.9 8.7 55 189-246 13-67 (242)
444 PF06414 Zeta_toxin: Zeta toxi 94.1 0.11 2.3E-06 51.2 6.1 103 187-294 13-116 (199)
445 TIGR03324 alt_F1F0_F1_al alter 94.1 0.17 3.8E-06 55.8 8.2 89 190-282 163-265 (497)
446 COG4619 ABC-type uncharacteriz 94.0 0.83 1.8E-05 42.0 10.9 21 191-211 31-51 (223)
447 cd02023 UMPK Uridine monophosp 94.0 0.032 6.9E-07 54.9 2.4 21 191-211 1-21 (198)
448 TIGR01039 atpD ATP synthase, F 94.0 0.12 2.7E-06 56.4 6.9 92 190-282 144-248 (461)
449 PRK00409 recombination and DNA 94.0 0.039 8.4E-07 65.7 3.4 23 189-211 327-349 (782)
450 cd02025 PanK Pantothenate kina 94.0 0.031 6.8E-07 55.7 2.2 21 191-211 1-21 (220)
451 TIGR03771 anch_rpt_ABC anchore 94.0 0.5 1.1E-05 47.4 11.0 23 190-212 7-29 (223)
452 TIGR01188 drrA daunorubicin re 94.0 0.44 9.6E-06 50.3 11.1 23 190-212 20-42 (302)
453 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.23 4.9E-06 48.9 8.3 23 190-212 27-49 (200)
454 KOG0736 Peroxisome assembly fa 93.9 0.34 7.4E-06 55.1 10.2 94 166-282 672-775 (953)
455 TIGR02788 VirB11 P-type DNA tr 93.9 0.2 4.3E-06 53.0 8.2 95 190-292 145-239 (308)
456 PRK07721 fliI flagellum-specif 93.9 0.21 4.6E-06 55.0 8.5 24 189-212 158-181 (438)
457 TIGR02655 circ_KaiC circadian 93.9 0.22 4.8E-06 56.3 9.0 61 176-240 250-310 (484)
458 PRK10751 molybdopterin-guanine 93.9 0.051 1.1E-06 51.3 3.3 25 188-212 5-29 (173)
459 PF00910 RNA_helicase: RNA hel 93.9 0.031 6.7E-07 48.6 1.7 21 192-212 1-21 (107)
460 cd02024 NRK1 Nicotinamide ribo 93.8 0.037 8E-07 53.3 2.3 22 191-212 1-22 (187)
461 cd01129 PulE-GspE PulE/GspE Th 93.8 0.28 6E-06 50.5 8.9 104 169-288 62-166 (264)
462 COG1117 PstB ABC-type phosphat 93.8 0.32 6.9E-06 46.7 8.3 23 189-211 33-55 (253)
463 TIGR01425 SRP54_euk signal rec 93.8 0.28 6.1E-06 53.5 9.2 24 188-211 99-122 (429)
464 TIGR02236 recomb_radA DNA repa 93.8 0.16 3.4E-06 54.0 7.4 59 180-238 86-148 (310)
465 PRK05439 pantothenate kinase; 93.8 0.29 6.3E-06 51.1 9.0 80 187-272 84-166 (311)
466 KOG1051 Chaperone HSP104 and r 93.8 0.37 8E-06 56.9 10.7 115 166-294 562-685 (898)
467 PRK09099 type III secretion sy 93.8 0.17 3.7E-06 55.4 7.6 90 189-282 163-264 (441)
468 PRK05688 fliI flagellum-specif 93.8 0.23 5E-06 54.4 8.5 89 190-282 169-269 (451)
469 TIGR00416 sms DNA repair prote 93.8 0.3 6.5E-06 54.4 9.7 52 176-229 81-132 (454)
470 PLN02318 phosphoribulokinase/u 93.8 0.072 1.6E-06 59.6 4.7 34 179-212 55-88 (656)
471 PRK14723 flhF flagellar biosyn 93.8 0.37 8.1E-06 56.3 10.6 24 189-212 185-208 (767)
472 COG1936 Predicted nucleotide k 93.8 0.047 1E-06 50.4 2.7 20 191-210 2-21 (180)
473 TIGR01040 V-ATPase_V1_B V-type 93.8 0.17 3.6E-06 55.2 7.3 93 190-282 142-258 (466)
474 cd03280 ABC_MutS2 MutS2 homolo 93.8 0.22 4.7E-06 49.0 7.7 21 190-210 29-49 (200)
475 cd03300 ABC_PotA_N PotA is an 93.8 0.41 9E-06 48.4 10.0 23 190-212 27-49 (232)
476 COG1131 CcmA ABC-type multidru 93.8 0.92 2E-05 47.5 12.7 23 190-212 32-54 (293)
477 PRK06217 hypothetical protein; 93.7 0.043 9.2E-07 53.2 2.6 22 191-212 3-24 (183)
478 COG0563 Adk Adenylate kinase a 93.7 0.043 9.4E-07 52.4 2.6 22 191-212 2-23 (178)
479 TIGR03263 guanyl_kin guanylate 93.7 0.047 1E-06 52.8 2.9 22 190-211 2-23 (180)
480 TIGR00968 3a0106s01 sulfate AB 93.7 0.41 8.9E-06 48.5 10.0 23 190-212 27-49 (237)
481 KOG0729 26S proteasome regulat 93.7 0.28 6.1E-06 48.2 8.0 52 166-219 177-239 (435)
482 PF00560 LRR_1: Leucine Rich R 93.7 0.034 7.4E-07 32.3 1.1 21 613-633 1-21 (22)
483 PRK12678 transcription termina 93.7 0.11 2.3E-06 57.8 5.7 100 177-281 405-513 (672)
484 PRK00131 aroK shikimate kinase 93.7 0.046 9.9E-07 52.5 2.7 24 189-212 4-27 (175)
485 COG1703 ArgK Putative periplas 93.7 0.053 1.1E-06 54.7 3.1 64 176-239 38-101 (323)
486 TIGR00958 3a01208 Conjugate Tr 93.7 0.58 1.3E-05 56.0 12.5 23 190-212 508-530 (711)
487 COG0714 MoxR-like ATPases [Gen 93.6 0.13 2.9E-06 55.1 6.4 66 166-240 24-89 (329)
488 PRK06793 fliI flagellum-specif 93.6 0.47 1E-05 51.9 10.5 119 190-312 157-289 (432)
489 TIGR02314 ABC_MetN D-methionin 93.6 0.43 9.4E-06 51.1 10.2 23 190-212 32-54 (343)
490 PF01078 Mg_chelatase: Magnesi 93.6 0.097 2.1E-06 50.6 4.7 42 166-211 3-44 (206)
491 PF03193 DUF258: Protein of un 93.6 0.11 2.4E-06 48.2 4.9 35 173-212 24-58 (161)
492 KOG0739 AAA+-type ATPase [Post 93.6 0.39 8.6E-06 48.2 8.8 93 166-282 133-236 (439)
493 PRK13545 tagH teichoic acids e 93.6 0.72 1.6E-05 51.6 12.0 23 190-212 51-73 (549)
494 cd02021 GntK Gluconate kinase 93.6 0.046 9.9E-07 51.0 2.4 22 191-212 1-22 (150)
495 PRK10416 signal recognition pa 93.6 0.4 8.7E-06 50.6 9.7 25 188-212 113-137 (318)
496 TIGR01420 pilT_fam pilus retra 93.6 0.23 4.9E-06 53.4 8.0 107 190-308 123-229 (343)
497 TIGR03496 FliI_clade1 flagella 93.5 0.28 6.1E-06 53.5 8.7 37 190-230 138-174 (411)
498 cd02028 UMPK_like Uridine mono 93.5 0.046 1E-06 52.6 2.4 22 191-212 1-22 (179)
499 COG2019 AdkA Archaeal adenylat 93.5 0.062 1.3E-06 49.1 3.0 23 189-211 4-26 (189)
500 PRK11000 maltose/maltodextrin 93.5 0.59 1.3E-05 50.8 11.2 23 190-212 30-52 (369)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-89 Score=792.07 Aligned_cols=803 Identities=33% Similarity=0.487 Sum_probs=618.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 038220 3 EFIVSLLIEKIATQLMEEAISFSRVRNQIEWIEGELKRMQCFLKDADAQQDSDERVRNWVADVRDVAYDTEDVIDSYIFK 82 (866)
Q Consensus 3 ~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~d~~yd~ed~ld~~~~~ 82 (866)
++.++..++++.+++.+++....++++.+..|++.|..+++++.||++++.+...++.|...++|++|+++|+++.|...
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999999999999988999999999999999999999999998
Q ss_pred hhhcccccchh-h--ccccccccccchhhhHHHHHHHHHHHHHHHHHHHhcccccCcccccCCCCCCccccccccccccC
Q 038220 83 MAQKREKGLIR-A--LFKRYPFVFFDEFSARRKVNKQISRIKMRIHDISSSRSTYGVKNIGRDGEGTSFAVDCLREKRRS 159 (866)
Q Consensus 83 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (866)
...++..+..+ + . .+..+ . ...+++.+..+..+.+|+-++.+..+.++........ ... ......+..
T Consensus 82 ~~~~~~~~~l~~~~~~-~~~~c-~---~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~--~~~--~~~~~~~e~ 152 (889)
T KOG4658|consen 82 EIERKANDLLSTRSVE-RQRLC-L---CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV--GES--LDPREKVET 152 (889)
T ss_pred HHHHHHhHHhhhhHHH-HHHHh-h---hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc--ccc--ccchhhccc
Confidence 76654332221 1 1 11111 1 1456777777777778888888777777755533221 110 001222344
Q ss_pred CCCCCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcc-ccCCCCceEEEEeCCCCCHHHHHH
Q 038220 160 YPHTSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSD-VKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 160 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
.|...... ||.+..++++.+.|.+++. .+++|+||||+||||||+.++|+.. ++.+|+.++||.||++|+...+++
T Consensus 153 ~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~ 229 (889)
T KOG4658|consen 153 RPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ 229 (889)
T ss_pred CCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence 44445555 9999999999999999874 8999999999999999999999987 999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCCC
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPG 318 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 318 (866)
+|++.++..+. .......++++..+.++|.++||+||+||||+..+|+.+..++|...+||||++|||++.|+....+.
T Consensus 230 ~Il~~l~~~~~-~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 230 TILERLGLLDE-EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHHhccCCc-ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 99999888522 22333347889999999999999999999999999999999999999999999999999999984454
Q ss_pred CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhh
Q 038220 319 SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQW 398 (866)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~ 398 (866)
..+++++.|+++|||.||.+.+|.... ...+.++++|++++++|+|+|||++++|+.|+.+.. .++|.++.+.+.+
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~---~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t-~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTL---GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT-VQEWRRALNVLKS 384 (889)
T ss_pred CccccccccCccccHHHHHHhhccccc---cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc-HHHHHHHHccccc
Confidence 689999999999999999999988642 334458999999999999999999999999999886 7899999999987
Q ss_pred hccC---C-ChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccC-CCCCCHHHHHHHHHHHHh
Q 038220 399 QLNL---N-PAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQP-RGIEPLEDVAEDYLEELV 473 (866)
Q Consensus 399 ~~~~---~-~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~-~~~~~~e~~~~~~l~~L~ 473 (866)
.... . .+.+++++.+||+.||+++|.||+|||+||+|+.|.++.++.+|+||||+.+ .++..++++|+.|+++|+
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 7432 2 2789999999999999999999999999999999999999999999999988 557788999999999999
Q ss_pred hCCccccccccCCCcEeEEEEcHHHHHHHHHhhc-----cccceEeecCC----CccccCCCceEEEEecCC---CcCCC
Q 038220 474 GRSMVEPASRKSNGKIKTIRVHDLLRELAISKAK-----EDQFLDIVRGD----SNARFLAKARRLAIHFGI---PSQTR 541 (866)
Q Consensus 474 ~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~-----~e~~~~~~~~~----~~~~~~~~~r~l~i~~~~---~~~~~ 541 (866)
+++|+...... ++..+|+|||+||++|.++++ +++++...+.. ........+||+++.++. .....
T Consensus 465 ~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 465 RASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 99999987744 556789999999999999999 66643322201 011133568999998887 44556
Q ss_pred CCCCceEEEecCCC----CCccccccCCCeeEEEEecCCc-cccCcccccCCCCceEEEeeCCCCccccccccCCCCccE
Q 038220 542 KSSRVRSLLFFDIS----EPVGSILEEYKLLQVLDLEGVY-MALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQS 616 (866)
Q Consensus 542 ~~~~lr~L~~~~~~----~~~~~~~~~~~~Lr~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 616 (866)
.++++++|.+..+. .....+|..++.||||||++|. +.++|..|++|.|||||+++++.++.+|..+++|..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 78899999999862 3344568999999999999875 579999999999999999999999999999999999999
Q ss_pred EecCCC-ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcc-hhHhhccccCCCeEEEEcc-
Q 038220 617 LDLSST-LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSC-VEQGLDKLLNLRELGLHGD- 693 (866)
Q Consensus 617 L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~- 693 (866)
||+..+ ....+|..+..|++||+|.+...... .....++.+.+|++|....+...+. +.+-+..++.|+++...-.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 999988 55666666677999999998765411 1112233334444443333321111 1111222222221111100
Q ss_pred cchhHHHHHHhhcCCCCCcEEEeeeccc----------------------------cccccCCccCCCCCceEEEEEeec
Q 038220 694 LILHEEALCKWIYNLKGLQCLKMQSRIT----------------------------YTVDLSDVQNFPPNLTELSLQFCF 745 (866)
Q Consensus 694 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~----------------------------~~~~l~~~~~~~~~L~~L~L~~~~ 745 (866)
...........+..+.+|+.|.+..+.. .....+.|..++++|+.|.+..|.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 0001122233344445555555544221 023345666788999999999999
Q ss_pred CCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEcc----CcccccceeeEeec-ccC
Q 038220 746 LTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEE----GAMCNLRRLEIIEC-MRL 820 (866)
Q Consensus 746 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~p~L~~L~l~~c-~~l 820 (866)
..+++++....+..+..+.+..+.+.+.....+.++|+++..+.+.+-. ++.|.... +.+|.+.++.+.+| ..+
T Consensus 782 ~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~ 860 (889)
T KOG4658|consen 782 LLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKL 860 (889)
T ss_pred ccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccce
Confidence 8888888888888888777767777764466778888888888887633 66665554 67788888888876 666
Q ss_pred CccCCC
Q 038220 821 KIVPSG 826 (866)
Q Consensus 821 ~~lp~~ 826 (866)
...|.+
T Consensus 861 ~~~~~~ 866 (889)
T KOG4658|consen 861 KEYPDG 866 (889)
T ss_pred eecCCc
Confidence 666664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.6e-62 Score=595.98 Aligned_cols=677 Identities=20% Similarity=0.264 Sum_probs=444.8
Q ss_pred HHHHHHHHHHHHHHhcccccCcccccCCCCCCccccccccccccCCCCCCCCCeeechhhHHHHHHHHhcCCCceEEEEE
Q 038220 115 KQISRIKMRIHDISSSRSTYGVKNIGRDGEGTSFAVDCLREKRRSYPHTSEEDIVGLGEDMMILGNRVIHGGLRRSVISI 194 (866)
Q Consensus 115 ~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I 194 (866)
.+++++++.+.+++... ++.+.....+++-...............+..+..++|||+++++++..++.-+.++.++|+|
T Consensus 134 ~~~~~w~~al~~~~~~~-g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI 212 (1153)
T PLN03210 134 DEKIQWKQALTDVANIL-GYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGI 212 (1153)
T ss_pred hHHHHHHHHHHHHhCcC-ceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEE
Confidence 46788888888887743 22221110000000000011111222333455678999999999999999776667999999
Q ss_pred EccCCChHHHHHHHHhcCccccCCCCceEEEEe---CCC-----------CC-HHHHHHHHHHHHhcCCCCccccCCHHH
Q 038220 195 IGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV---SQE-----------YR-KWEILQDLCKKVLGLGKADLDKMHMED 259 (866)
Q Consensus 195 ~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~-----------~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~ 259 (866)
+||||+||||||+++|+ ++..+|++.+|+.. +.. +. ...+..+++.++..... .....
T Consensus 213 ~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~--~~~~~--- 285 (1153)
T PLN03210 213 WGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD--IKIYH--- 285 (1153)
T ss_pred EcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC--cccCC---
Confidence 99999999999999999 67889998887742 111 01 12334455555444311 11111
Q ss_pred HHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCCCCCCeeccCCChHHHHHHHHHH
Q 038220 260 MKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 260 ~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
...+++.++++|+||||||||+...|+.+.......+.||+||||||+..++...+.. .+|+++.++.++||+||+++
T Consensus 286 -~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~ 363 (1153)
T PLN03210 286 -LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRS 363 (1153)
T ss_pred -HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHH
Confidence 1456778899999999999999999999988777778899999999999998765443 78999999999999999999
Q ss_pred HhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCC
Q 038220 340 AFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLP 419 (866)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~ 419 (866)
||+.. ..+..+.+++++|+++|+|+|||++++|+.|+.+. ..+|..+++++..... ..+..+|++||++|+
T Consensus 364 Af~~~----~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~--~~~W~~~l~~L~~~~~---~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 364 AFKKN----SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD--KEDWMDMLPRLRNGLD---GKIEKTLRVSYDGLN 434 (1153)
T ss_pred hcCCC----CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHhCcc---HHHHHHHHHhhhccC
Confidence 99864 23456889999999999999999999999999764 7899999999875433 689999999999998
Q ss_pred C-chhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHHHHhhCCccccccccCCCcEeEEEEcHHH
Q 038220 420 Y-YLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLL 498 (866)
Q Consensus 420 ~-~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv 498 (866)
+ ..|.||+++|+|+.+..++ .+..|.+.+... ++..++.|++++|++... .++.|||++
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl 494 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----------VNIGLKNLVDKSLIHVRE-------DIVEMHSLL 494 (1153)
T ss_pred ccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----------chhChHHHHhcCCEEEcC-------CeEEhhhHH
Confidence 7 5999999999999886554 466788876543 223488999999998643 258999999
Q ss_pred HHHHHHhhccccce-----EeecCC------CccccCCCceEEEEecCC-------CcCCCCCCCceEEEecCCC-----
Q 038220 499 RELAISKAKEDQFL-----DIVRGD------SNARFLAKARRLAIHFGI-------PSQTRKSSRVRSLLFFDIS----- 555 (866)
Q Consensus 499 ~~~~~~~~~~e~~~-----~~~~~~------~~~~~~~~~r~l~i~~~~-------~~~~~~~~~lr~L~~~~~~----- 555 (866)
|++++.++.++.-. ..+... ...+...+++.++++... ...+..+++|+.|.++...
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccc
Confidence 99999998765310 000000 001122445666655433 1224567788887775431
Q ss_pred ---CCccccccCC-CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCC-cccccccc
Q 038220 556 ---EPVGSILEEY-KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSST-LVDPIPLV 630 (866)
Q Consensus 556 ---~~~~~~~~~~-~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~-~~~~lp~~ 630 (866)
-.++..|..+ +.||.|++.++.+..+|..+ .+.+|+.|+++++.+..+|..+..+.+|++|+|+++ .+..+| .
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ 652 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D 652 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c
Confidence 1122333333 24677777666666666555 355666666666666666666666666666666655 455555 3
Q ss_pred ccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCC
Q 038220 631 IWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKG 710 (866)
Q Consensus 631 i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~ 710 (866)
+..+++|++|++++|.....+|..++++++|+.|++.+|.....+|..+ ++++|+.|++++|... ..++. ...+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--~~~p~---~~~n 726 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL--KSFPD---ISTN 726 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc--ccccc---ccCC
Confidence 5566666666666665555566666666666666666554444444322 4555666666555321 11110 1123
Q ss_pred CcEEEeeeccccccccC------------------------------CccCCCCCceEEEEEeecCCCCCccccCCCCCC
Q 038220 711 LQCLKMQSRITYTVDLS------------------------------DVQNFPPNLTELSLQFCFLTEDPLKELEKLPNL 760 (866)
Q Consensus 711 L~~L~l~~~~~~~~~l~------------------------------~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 760 (866)
|+.|++.++.+ ..+| .....+++|+.|+|++|......+..++++++|
T Consensus 727 L~~L~L~~n~i--~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 727 ISWLDLDETAI--EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred cCeeecCCCcc--ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 33444433221 0111 111123566777777665555555666777777
Q ss_pred CeeEEeccccCCCeEEECCCCCccccEEEeecCCCC--------------------cceEEccCcccccceeeEeecccC
Q 038220 761 RVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL--------------------ERWRIEEGAMCNLRRLEIIECMRL 820 (866)
Q Consensus 761 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--------------------~~~~~~~~~~p~L~~L~l~~c~~l 820 (866)
+.|+|++|.... .+|... ++++|+.|+|++|..+ +.+|..+..+++|+.|++.+|+.+
T Consensus 805 ~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 805 EHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 777776554222 333222 4555555555555443 334445567899999999999999
Q ss_pred CccCCCccCCCCCCEEEEeCCC
Q 038220 821 KIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 821 ~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+.+|..+..+++|+.+++++|+
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccCcccccccCCCeeecCCCc
Confidence 9999888899999999999997
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-43 Score=374.98 Aligned_cols=282 Identities=33% Similarity=0.593 Sum_probs=230.1
Q ss_pred chhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC
Q 038220 171 LGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA 250 (866)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~ 250 (866)
||.++++|.++|....++.++|+|+||||+||||||.+++++..++.+|+.++|+.++...+...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999666789999999999999999999999766899999999999999999999999999998886222
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCCCCCCeeccCCChH
Q 038220 251 DLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPGSPPYELCLLNEE 330 (866)
Q Consensus 251 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~ 330 (866)
.....+..+....+.+.|.++++||||||||+...|+.+...++....|++||||||+..++..+.....++++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22455778899999999999999999999999999999998888888899999999999988766543478999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhhhccC---CChhH
Q 038220 331 DSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQLNL---NPAKC 407 (866)
Q Consensus 331 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~~~~~---~~~~~ 407 (866)
+|++||.+.++.... ..++...+.+++|+++|+|+|||++++|++|+.+. +..+|..+++.+...... ....+
T Consensus 161 ea~~L~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 161 EALELFKKRAGRKES---ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKS-TVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp HHHHHHHHHHTSHS-------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHH-SSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred ccccccccccccccc---ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 999999999877541 22344567899999999999999999999997655 468899999887766543 23889
Q ss_pred HHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCC
Q 038220 408 MDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPR 456 (866)
Q Consensus 408 ~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~ 456 (866)
..++.+||+.||+++|.||+|||+||+++.|+.+.++++|++||||...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1e-24 Score=269.67 Aligned_cols=313 Identities=22% Similarity=0.194 Sum_probs=180.6
Q ss_pred CCceEEEEecCCCc---CCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccc-cCcccccCCCCceEEEeeC
Q 038220 525 AKARRLAIHFGIPS---QTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMA-LIDSSIGNLIHLRYLDLRK 598 (866)
Q Consensus 525 ~~~r~l~i~~~~~~---~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~ 598 (866)
..+|++.+..+... ....+++|++|.+.++ ....+..+.++++|++|++++|.+. .+|..++++++|++|++++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 34555555443311 1124566667766665 2344555666777777777777653 5666677777777777777
Q ss_pred CCCc-cccccccCCCCccEEecCCCcc-ccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchh
Q 038220 599 TWLK-MLPSSMGNLFNLQSLDLSSTLV-DPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVE 676 (866)
Q Consensus 599 ~~i~-~lp~~i~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~ 676 (866)
|.+. .+|..++++.+|++|++++|.+ ..+|..+.++++|++|++++|...+..|..++++++|++|++..+.....++
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 6655 5666677777777777776643 3566667777777777777776655666667777777777766664444455
Q ss_pred HhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCC
Q 038220 677 QGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEK 756 (866)
Q Consensus 677 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 756 (866)
..+.++++|+.|++++|... ..++..+..+++|+.|++.+|.+ ....|..+..+++|+.|+|++|.+.+..+..++.
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLS--GEIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred hhHhhccCcCEEECcCCeec--cCCChhHcCCCCCcEEECCCCcc-CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 55666777777777666532 22445556666777777766543 2234555556667777777777666556666666
Q ss_pred CCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEE
Q 038220 757 LPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNL 836 (866)
Q Consensus 757 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 836 (866)
+++|+.|+|++|.+.+ .++..+..+++|+.|++++|.....++...+.+++|+.|++++|.....+|..+..+++|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEe-eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 6777777776665543 233333334444444444443333333333344444444444444333334334444444444
Q ss_pred EEeCC
Q 038220 837 KLGYM 841 (866)
Q Consensus 837 ~l~~~ 841 (866)
++++|
T Consensus 434 ~Ls~N 438 (968)
T PLN00113 434 DISNN 438 (968)
T ss_pred ECcCC
Confidence 44433
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=3.8e-24 Score=264.71 Aligned_cols=298 Identities=25% Similarity=0.224 Sum_probs=181.2
Q ss_pred CCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccc-cCcccccCCCCceEEEeeCCCCc-cccccccCCCCccE
Q 038220 541 RKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMA-LIDSSIGNLIHLRYLDLRKTWLK-MLPSSMGNLFNLQS 616 (866)
Q Consensus 541 ~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~ 616 (866)
.++++|++|.+.++ ....+..+.+++.|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++.+|++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 34455555555444 2233444555555555555555543 45555555555555555555544 44555555555555
Q ss_pred EecCCCcc-ccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 617 LDLSSTLV-DPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 617 L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
|++++|.+ ..+|..+..+++|++|++++|.....+|..+.++++|+.|++.++......+..+..+++|+.|++.+|..
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 55555533 24455555555555555555555444555555555666665555544444444455566666666665543
Q ss_pred hhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeE
Q 038220 696 LHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEM 775 (866)
Q Consensus 696 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 775 (866)
. ..++..+..+++|+.|++++|.+ ....|.++..+++|+.|++++|.+....+..++.+++|+.|+|++|.+.+ .+
T Consensus 345 ~--~~~p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-~~ 420 (968)
T PLN00113 345 S--GEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-EL 420 (968)
T ss_pred c--CcCChHHhCCCCCcEEECCCCee-EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-EC
Confidence 1 22344455566666666666543 22345555556677777777777766666677778888888887777765 55
Q ss_pred EECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 776 VSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 776 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+..+..+++|+.|++++|.....++.....+|+|+.|++++|.....+|..+ ..++|+.|++++|.+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l 487 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQF 487 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCcc
Confidence 5667778888888888877665555555678888888888888777777644 457888888888874
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=8.7e-26 Score=236.15 Aligned_cols=311 Identities=22% Similarity=0.221 Sum_probs=255.3
Q ss_pred CCCceEEEEecCC----CcCCCCCCCceEEEecCC---CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEe
Q 038220 524 LAKARRLAIHFGI----PSQTRKSSRVRSLLFFDI---SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDL 596 (866)
Q Consensus 524 ~~~~r~l~i~~~~----~~~~~~~~~lr~L~~~~~---~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l 596 (866)
.+++.|+++..+. ..++.+++.||++.+..+ ..-+|.-+-.++.|.+|||+.|++.+.|..+.+-+++-.|+|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 3556677765554 445678899999999877 244555566789999999999999999999999999999999
Q ss_pred eCCCCccccccc-cCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecC-Ccc
Q 038220 597 RKTWLKMLPSSM-GNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICE-TSC 674 (866)
Q Consensus 597 ~~~~i~~lp~~i-~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~-~~~ 674 (866)
++|+|..+|.++ -+|..|-+|||++|.+..+|+-+..|.+|++|.+++|.........+.+|++|++|.+.+... ...
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence 999999999765 488899999999999999999999999999999999976543344456788888888877643 366
Q ss_pred hhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCcccc
Q 038220 675 VEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKEL 754 (866)
Q Consensus 675 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l 754 (866)
+|.++..+.||+.++++.|.. ..+|.++.++.+|+.|+|++|.+. .+.-......+|++|+|+.|.++ ..|..+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~L---p~vPecly~l~~LrrLNLS~N~it--eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNL---PIVPECLYKLRNLRRLNLSGNKIT--ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred CCCchhhhhhhhhccccccCC---CcchHHHhhhhhhheeccCcCcee--eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 777799999999999998864 456788999999999999998753 22222333468999999999874 566788
Q ss_pred CCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCC
Q 038220 755 EKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLS 834 (866)
Q Consensus 755 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~ 834 (866)
.+|+.|+.|.+.+|.++-+.+|..++.+.+|+++...+| +++-.|...+.|++|+.|.|..|. +-.+|.++.-++.|+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcc
Confidence 899999999997777766678888999999999999864 578788888999999999999665 556899999999999
Q ss_pred EEEEeCCC
Q 038220 835 NLKLGYMP 842 (866)
Q Consensus 835 ~L~l~~~~ 842 (866)
.|+++.||
T Consensus 366 vLDlreNp 373 (1255)
T KOG0444|consen 366 VLDLRENP 373 (1255)
T ss_pred eeeccCCc
Confidence 99999987
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=8.4e-25 Score=228.84 Aligned_cols=310 Identities=20% Similarity=0.182 Sum_probs=255.4
Q ss_pred CCceEEEEecCC----CcCCCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccc--cCcccccCCCCceEEEee
Q 038220 525 AKARRLAIHFGI----PSQTRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMA--LIDSSIGNLIHLRYLDLR 597 (866)
Q Consensus 525 ~~~r~l~i~~~~----~~~~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~ 597 (866)
..++.+.+.... +.++..+.+|..|.+.++ -.....-++.++.||.+++..|+++ .+|..|.+|..|..|||+
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 334555554433 455667788888888776 2334456788899999999999885 799999999999999999
Q ss_pred CCCCccccccccCCCCccEEecCCCcccccccccc-ccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcc-h
Q 038220 598 KTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIW-KMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSC-V 675 (866)
Q Consensus 598 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~-~ 675 (866)
+|.+++.|..+.+-+++-+|+|++|++..+|..+. +|..|-.|++++|... .+|+.+..+.+|++|.++++..... +
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 99999999999999999999999999999997654 8999999999999876 8999999999999999998865432 2
Q ss_pred hHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccC
Q 038220 676 EQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELE 755 (866)
Q Consensus 676 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 755 (866)
.+ +..+++|+.|.+++... +...+|.++..+.+|..++++.|. ...+|..+..+++|+.|+|++|.++.-. ...+
T Consensus 191 rQ-LPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~--Lp~vPecly~l~~LrrLNLS~N~iteL~-~~~~ 265 (1255)
T KOG0444|consen 191 RQ-LPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN--LPIVPECLYKLRNLRRLNLSGNKITELN-MTEG 265 (1255)
T ss_pred hc-Cccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC--CCcchHHHhhhhhhheeccCcCceeeee-ccHH
Confidence 33 56667777888887654 456778888999999999999876 5678888888999999999999886432 2445
Q ss_pred CCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCC-cceEEccCcccccceeeEeecccCCccCCCccCCCCCC
Q 038220 756 KLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL-ERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLS 834 (866)
Q Consensus 756 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~ 834 (866)
.-.+|+.|+||.|.++ .+|.....+++|+.|.+.+|... +.+|..+|.+..|+.+...+| +++-+|.++..|+.|+
T Consensus 266 ~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQ 342 (1255)
T ss_pred HHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHH
Confidence 5678999999999987 57888889999999999887643 568889999999999999966 6888999999999999
Q ss_pred EEEEeCCCH
Q 038220 835 NLKLGYMPF 843 (866)
Q Consensus 835 ~L~l~~~~~ 843 (866)
.|.++.|.+
T Consensus 343 kL~L~~NrL 351 (1255)
T KOG0444|consen 343 KLKLDHNRL 351 (1255)
T ss_pred Hhcccccce
Confidence 999999873
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=9.1e-22 Score=205.24 Aligned_cols=292 Identities=19% Similarity=0.220 Sum_probs=169.2
Q ss_pred CCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCcccc-ccccCCCCccEE
Q 038220 542 KSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSL 617 (866)
Q Consensus 542 ~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L 617 (866)
...++..|.+.++ ...-...++-++.||+|||+.|.+.++|.. +..=.++++|+|++|.|+.+- ..+..|.+|-+|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 3445777777665 333334566677788888888887777643 445567888888888888664 356677788888
Q ss_pred ecCCCcccccccc-ccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccch
Q 038220 618 DLSSTLVDPIPLV-IWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLIL 696 (866)
Q Consensus 618 ~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 696 (866)
.|+.|.+..+|.. |.+|++|+.|++..|+.-..--..+..|++|+.|.+-.+....--...+-.|.++++|++..|...
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 8888888888765 444888888888877653111233556677777666555322111112344566777777666532
Q ss_pred hHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEE
Q 038220 697 HEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMV 776 (866)
Q Consensus 697 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 776 (866)
.. -..++..+..|+.|++++|.+..-. ++...++++|+.|+|+.|.++.-....+..|..|+.|+|+.|++.. --.
T Consensus 283 ~v--n~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e 358 (873)
T KOG4194|consen 283 AV--NEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAE 358 (873)
T ss_pred hh--hcccccccchhhhhccchhhhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHh
Confidence 11 1234556667777777766542222 2233455667777777776665555555555566666665555431 111
Q ss_pred EC---------------------------CCCCccccEEEeecCCCCcceE-EccCcccccceeeEeecccCCccCCCcc
Q 038220 777 SS---------------------------SGGFSQLQFLKLSNLCYLERWR-IEEGAMCNLRRLEIIECMRLKIVPSGLW 828 (866)
Q Consensus 777 ~~---------------------------~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~l~~c~~l~~lp~~l~ 828 (866)
.. +.++++|+.|.|.+|+. ..++ -.+..+++|+.|+|.+|+....-|..+.
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCCcceeecccccc
Confidence 12 33455555555555432 2222 2334555555555555554444455555
Q ss_pred CCCCCCEEEEe
Q 038220 829 PLTTLSNLKLG 839 (866)
Q Consensus 829 ~l~~L~~L~l~ 839 (866)
++ .|++|.+.
T Consensus 438 ~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 438 PM-ELKELVMN 447 (873)
T ss_pred cc-hhhhhhhc
Confidence 55 55555544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.2e-21 Score=204.43 Aligned_cols=249 Identities=18% Similarity=0.156 Sum_probs=145.9
Q ss_pred ccCCCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-cccccccc
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLK 638 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~ 638 (866)
|.++..|.+|.|+.|.+..+|.. |.+|++|+.|+|..|.|... .-.+..|.+|+.|.+..|.+..+-.+ |..|.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 33444444444444444444432 22344444444444444322 22334444444444444444444322 44566677
Q ss_pred EEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeee
Q 038220 639 HVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQS 718 (866)
Q Consensus 639 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 718 (866)
+|++..|+........+.+|+.|+.|+++.+.....-..+++.+++|+.|+++.|.+...+ +.++..+..|+.|.|+.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSH 350 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhcccc
Confidence 7777666665444445566777777777766544444445666777777777776542111 12344456677777776
Q ss_pred ccccccccCCccCCCCCceEEEEEeecCCC---CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 719 RITYTVDLSDVQNFPPNLTELSLQFCFLTE---DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 719 ~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
|.+.. --...+..+.+|++|+|+.|.+++ +....+..|++|+.|.|.+|.+.. ..-..+.+|+.|+.|+|.+|..
T Consensus 351 Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 351 NSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccCcccceecCCCCcc
Confidence 65311 111223456789999999997764 333456779999999999998763 2224578999999999999887
Q ss_pred CcceEEccCcccccceeeEe
Q 038220 796 LERWRIEEGAMCNLRRLEII 815 (866)
Q Consensus 796 l~~~~~~~~~~p~L~~L~l~ 815 (866)
..--+..+..| +|++|.+.
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eeecccccccc-hhhhhhhc
Confidence 65445556666 78877765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.1e-18 Score=213.29 Aligned_cols=267 Identities=22% Similarity=0.224 Sum_probs=175.2
Q ss_pred CCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCC-CccccccccCCCCccEEecCC
Q 038220 544 SRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTW-LKMLPSSMGNLFNLQSLDLSS 621 (866)
Q Consensus 544 ~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~ 621 (866)
.+||.|.+.++ -..+|..| ...+|+.|++.++.+..+|..+..+++|++|+|+++. ++.+| .++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 46888888776 33444444 4577888888888888888888888888888888764 66776 477888888888888
Q ss_pred C-ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccch----
Q 038220 622 T-LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLIL---- 696 (866)
Q Consensus 622 ~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---- 696 (866)
| .+..+|..+.++++|++|++++|.....+|..+ ++++|+.|++.+|.....++. + ..+|+.|++.++...
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-~--~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-I--STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-c--cCCcCeeecCCCccccccc
Confidence 7 677888888888888888888887776777665 677788777776643222222 1 123333333333210
Q ss_pred -----------------------------------------------hHHHHHHhhcCCCCCcEEEeeeccccccccCCc
Q 038220 697 -----------------------------------------------HEEALCKWIYNLKGLQCLKMQSRITYTVDLSDV 729 (866)
Q Consensus 697 -----------------------------------------------~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~ 729 (866)
....++.++.++++|+.|++++|.. ...+|..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~-L~~LP~~ 821 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN-LETLPTG 821 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC-cCeeCCC
Confidence 0112333444445555555544322 1223332
Q ss_pred cCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCccccc
Q 038220 730 QNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNL 809 (866)
Q Consensus 730 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L 809 (866)
. .+++|++|+|++|......+. ..++|+.|+|++|.+. .+|.++..+++|+.|++++|+.+..++.....+++|
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred C-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 2 344555555555532222111 1245666777666654 456677889999999999999999998888899999
Q ss_pred ceeeEeecccCCcc
Q 038220 810 RRLEIIECMRLKIV 823 (866)
Q Consensus 810 ~~L~l~~c~~l~~l 823 (866)
+.|++++|..++.+
T Consensus 896 ~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 896 ETVDFSDCGALTEA 909 (1153)
T ss_pred CeeecCCCcccccc
Confidence 99999999988754
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.6e-21 Score=194.89 Aligned_cols=273 Identities=23% Similarity=0.211 Sum_probs=153.1
Q ss_pred cccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEE
Q 038220 561 ILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHV 640 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 640 (866)
.+..+..|..|+..+|++..+|..++.+..|..|++.+|.++++|+..-+++.|++||...|.++.+|.+++.+.+|..|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 33334444444444444444444444444444445545444444444434444555555444455555555555555555
Q ss_pred eccCccccccCCCCCCCCCCCceecceeecCCcchhH-hhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec
Q 038220 641 YFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQ-GLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 641 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
++..|... .+| .|++|..|..|....+ ....+|. .+.++++|..|++..|.. ..+|..+..+.+|+.|++++|
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNkl---ke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKL---KEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccccc---ccCchHHHHhhhhhhhcccCC
Confidence 55554443 344 4555555555544443 2233332 244778888888887753 334455555666666666665
Q ss_pred cccccccCCccCCC------------------------------------------------------------------
Q 038220 720 ITYTVDLSDVQNFP------------------------------------------------------------------ 733 (866)
Q Consensus 720 ~~~~~~l~~~~~~~------------------------------------------------------------------ 733 (866)
.+. .+|..++++
T Consensus 286 ~is--~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 286 DIS--SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred ccc--cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 432 000000000
Q ss_pred ------------------------CCceEEEEEeecCCC-----------------------CCccccCCCCCCCeeEEe
Q 038220 734 ------------------------PNLTELSLQFCFLTE-----------------------DPLKELEKLPNLRVLKLK 766 (866)
Q Consensus 734 ------------------------~~L~~L~L~~~~l~~-----------------------~~~~~l~~l~~L~~L~L~ 766 (866)
.-.+..+++.|.+.+ ..+..+..+++|..|+|+
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 013444444444321 122334567888888886
Q ss_pred ccccCCCeEEECCCCCccccEEEeecCCCC----------------------cceEE-ccCcccccceeeEeecccCCcc
Q 038220 767 QSSYLGKEMVSSSGGFSQLQFLKLSNLCYL----------------------ERWRI-EEGAMCNLRRLEIIECMRLKIV 823 (866)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----------------------~~~~~-~~~~~p~L~~L~l~~c~~l~~l 823 (866)
+|-.. .+|..++.+-.|+.|+++.|..- ..++. ....|.+|..|++.+|. +..+
T Consensus 444 NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~I 520 (565)
T KOG0472|consen 444 NNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQI 520 (565)
T ss_pred cchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhC
Confidence 66554 56667777777888888776431 11111 24578999999999875 6779
Q ss_pred CCCccCCCCCCEEEEeCCCHH
Q 038220 824 PSGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 824 p~~l~~l~~L~~L~l~~~~~~ 844 (866)
|.++++|.+|++|++.|||+.
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChhhccccceeEEEecCCccC
Confidence 999999999999999999964
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.9e-20 Score=187.19 Aligned_cols=267 Identities=22% Similarity=0.207 Sum_probs=168.6
Q ss_pred eEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccc
Q 038220 568 LQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 647 (866)
|..|.++.|.+..+...+.++..|..|++.+|.+..+|++|+++..++.|+++++++.++|..+..+.+|++|+.+.+..
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 34444555554444444555555555555555555555555555555555555555555555555555555555555544
Q ss_pred cccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccC
Q 038220 648 MVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLS 727 (866)
Q Consensus 648 ~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~ 727 (866)
. .+|++++.+..|..++..++ ....+|+.+.++.+|..|.+.++.. .+++...-.++.|++|+...|. ...+|
T Consensus 127 ~-el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~L~~ld~~~N~--L~tlP 199 (565)
T KOG0472|consen 127 K-ELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKL---KALPENHIAMKRLKHLDCNSNL--LETLP 199 (565)
T ss_pred e-ecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccch---hhCCHHHHHHHHHHhcccchhh--hhcCC
Confidence 4 45555555555555554444 2333333355555555555555432 2222223335566666655543 45667
Q ss_pred CccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECC-CCCccccEEEeecCCCCcceEEccCcc
Q 038220 728 DVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSS-GGFSQLQFLKLSNLCYLERWRIEEGAM 806 (866)
Q Consensus 728 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 806 (866)
.-++.+.+|.-|+|..|.+.. ++.++.|..|++|+++.|.+. .++... ..+++|..|++.+| ++++.|.+++-+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~vLDLRdN-klke~Pde~clL 274 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLL 274 (565)
T ss_pred hhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHH--hhHHHHhcccccceeeecccc-ccccCchHHHHh
Confidence 777777888888888887753 337888889999999877764 344333 47899999999986 467888888899
Q ss_pred cccceeeEeecccCCccCCCccCCCCCCEEEEeCCCHHHHHH
Q 038220 807 CNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPFDFDLM 848 (866)
Q Consensus 807 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 848 (866)
.+|++|++++|. ++.+|..++++ +|+.|.+.|||..-..+
T Consensus 275 rsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 275 RSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred hhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHH
Confidence 999999999775 67799999999 99999999999655443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=8.6e-18 Score=185.53 Aligned_cols=177 Identities=23% Similarity=0.189 Sum_probs=94.9
Q ss_pred CCceecceeecCCcchhHhhccccCCCeEEEEcccchh--------------------HHHHHHhhcCCCCCcEEEeeec
Q 038220 660 NLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILH--------------------EEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 660 ~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
+|+++++..+ ....+|+.++.+.+|+.+.+..|.... .+.++..+...++|++|+|..|
T Consensus 242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchh-hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 4455555444 223445668888888888888775311 1122233344667888888875
Q ss_pred ccc-----------------------ccccCCccC-CCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeE
Q 038220 720 ITY-----------------------TVDLSDVQN-FPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEM 775 (866)
Q Consensus 720 ~~~-----------------------~~~l~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 775 (866)
.+. ...+|.... ..+.|+.|++.+|.+++...+.|-+.++|+.|+|++|.+.. +
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--f 398 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--F 398 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--C
Confidence 421 111111111 12346666666666666666666666666666666665431 2
Q ss_pred EE-CCCCCccccEEEeecCCCCcceEE----------------------ccCcccccceeeEeecccCC--ccCCCccCC
Q 038220 776 VS-SSGGFSQLQFLKLSNLCYLERWRI----------------------EEGAMCNLRRLEIIECMRLK--IVPSGLWPL 830 (866)
Q Consensus 776 ~~-~~~~~~~L~~L~l~~~~~l~~~~~----------------------~~~~~p~L~~L~l~~c~~l~--~lp~~l~~l 830 (866)
+. .+.+++.|+.|+|++|. +..++. .+..+|.|+.++++.|. ++ .+|.....
T Consensus 399 pas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~p~- 475 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEALPS- 475 (1081)
T ss_pred CHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhCCC-
Confidence 22 23455566666666643 333333 34456666666666443 33 22332222
Q ss_pred CCCCEEEEeCCC
Q 038220 831 TTLSNLKLGYMP 842 (866)
Q Consensus 831 ~~L~~L~l~~~~ 842 (866)
++|++|+++||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 677777777776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=1.3e-14 Score=166.35 Aligned_cols=254 Identities=19% Similarity=0.118 Sum_probs=182.8
Q ss_pred eEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccc
Q 038220 547 RSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVD 625 (866)
Q Consensus 547 r~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~ 625 (866)
..|.+.++ -..+|..+. ++|+.|++.+|.+..+|.. +++|++|++++|.++.+|.. ..+|++|++++|.+.
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 34455444 122343332 3688999999999888853 57899999999999988853 468899999999888
Q ss_pred cccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhh
Q 038220 626 PIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWI 705 (866)
Q Consensus 626 ~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 705 (866)
.+|.. ..+|+.|++++|... .+|. .+++|+.|++.++... .++. + ..+|+.|.+.+|.... ++.
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~-l--p~~L~~L~Ls~N~L~~---LP~-- 339 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA-L--PSELCKLWAYNNQLTS---LPT-- 339 (788)
T ss_pred hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC-C--cccccccccccCcccc---ccc--
Confidence 88753 357888999998766 6665 3478999998887433 3333 1 2367788888876532 221
Q ss_pred cCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccc
Q 038220 706 YNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQL 785 (866)
Q Consensus 706 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 785 (866)
..++|+.|++++|.+. .+|. .+++|+.|++++|.+.. .+. + .++|+.|+|++|.+.. ++. ..++|
T Consensus 340 -lp~~Lq~LdLS~N~Ls--~LP~---lp~~L~~L~Ls~N~L~~-LP~-l--~~~L~~LdLs~N~Lt~--LP~---l~s~L 404 (788)
T PRK15387 340 -LPSGLQELSVSDNQLA--SLPT---LPSELYKLWAYNNRLTS-LPA-L--PSGLKELIVSGNRLTS--LPV---LPSEL 404 (788)
T ss_pred -cccccceEecCCCccC--CCCC---CCcccceehhhcccccc-Ccc-c--ccccceEEecCCcccC--CCC---cccCC
Confidence 1247999999988643 4554 24688999999998764 222 2 3579999999988763 332 24689
Q ss_pred cEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCHH
Q 038220 786 QFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 786 ~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 844 (866)
+.|++++|.. ..+|. .+.+|+.|++++|. ++.+|..+..+++|+.|++++|++.
T Consensus 405 ~~LdLS~N~L-ssIP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 405 KELMVSGNRL-TSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CEEEccCCcC-CCCCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 9999999864 55553 24578999999886 6689999999999999999999964
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=2.2e-16 Score=174.51 Aligned_cols=289 Identities=21% Similarity=0.177 Sum_probs=174.6
Q ss_pred CCCCCCceEEEecCCCCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEec
Q 038220 540 TRKSSRVRSLLFFDISEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDL 619 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 619 (866)
+..++++.+|.+..+. +...--+-+.|+.|....|.+..+-. ...-.+|+|++++.+.++.+|+.++.+.+|+.|++
T Consensus 195 ls~~~~l~~l~c~rn~--ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQ--LSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred hhhccchhhhhhhhcc--cceEEecCcchheeeeccCcceeecc-ccccccceeeecchhhhhcchHHHHhcccceEecc
Confidence 3445555555544331 11122233566777777776652211 11224688888888888888888888888888888
Q ss_pred CCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccC-CCeEEE--------
Q 038220 620 SSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLN-LRELGL-------- 690 (866)
Q Consensus 620 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l-------- 690 (866)
.+|.+..+|..+..+.+|+.|.+..|... .+|+....+++|++|++..+.........+..+.. |+.|+.
T Consensus 272 n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 88888888888888888888888888765 77877888888888888777433222221222211 233332
Q ss_pred ----------------EcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCC-ccCCCCCceEEEEEeecCCCCCccc
Q 038220 691 ----------------HGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSD-VQNFPPNLTELSLQFCFLTEDPLKE 753 (866)
Q Consensus 691 ----------------~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~~~~ 753 (866)
.+|.. .+.....+..+++|+.|+|++|.+ ..+|. .+..++.|+.|+|++|+++.- +..
T Consensus 351 p~~~e~~~~~Lq~LylanN~L--td~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~L-p~t 425 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHL--TDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTL-PDT 425 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcc--cccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhh-hHH
Confidence 22222 122223345556666666666542 22332 233455666666666665432 255
Q ss_pred cCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccC-cccccceeeEeecccCCccCCCccCCCC
Q 038220 754 LEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEG-AMCNLRRLEIIECMRLKIVPSGLWPLTT 832 (866)
Q Consensus 754 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~p~L~~L~l~~c~~l~~lp~~l~~l~~ 832 (866)
+..++.|+.|...+|.+. .+| .+..+++|+.++++.|. +..+..... .-|+|++|++++|..+.---..+..+.+
T Consensus 426 va~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred HHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence 666666666666555543 344 67889999999999754 454433222 2389999999999875432234445555
Q ss_pred CCEEEEeCC
Q 038220 833 LSNLKLGYM 841 (866)
Q Consensus 833 L~~L~l~~~ 841 (866)
+...++.-+
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 555555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=1.2e-14 Score=167.88 Aligned_cols=225 Identities=18% Similarity=0.196 Sum_probs=121.4
Q ss_pred eeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCcc
Q 038220 567 LLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 646 (866)
.|+.|+|++|.+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 34555555555555554332 245555555555555554332 245555555555555554432 245555555444
Q ss_pred ccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccccccc
Q 038220 647 EMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDL 726 (866)
Q Consensus 647 ~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l 726 (866)
.. .+|..+. ++|+.|++++|.... ++..+ .++|+.|++++|.+. .+
T Consensus 274 L~-~LP~~l~--------------------------~sL~~L~Ls~N~Lt~---LP~~l--p~sL~~L~Ls~N~Lt--~L 319 (754)
T PRK15370 274 IS-CLPENLP--------------------------EELRYLSVYDNSIRT---LPAHL--PSGITHLNVQSNSLT--AL 319 (754)
T ss_pred cC-ccccccC--------------------------CCCcEEECCCCcccc---Ccccc--hhhHHHHHhcCCccc--cC
Confidence 33 3443322 245555555443211 11111 134566666665432 23
Q ss_pred CCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcc
Q 038220 727 SDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAM 806 (866)
Q Consensus 727 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 806 (866)
|..+ +++|+.|++++|.++. .+..+ .++|+.|+|++|.+.. ++..+ .++|+.|+|++|.. ..+|... .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~L-t~LP~~l--~ 387 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNAL-TNLPENL--P 387 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcC-CCCCHhH--H
Confidence 4322 3578888888887654 22223 2678888888877652 33222 35788888888753 4454332 2
Q ss_pred cccceeeEeecccCCccCCCcc----CCCCCCEEEEeCCCHH
Q 038220 807 CNLRRLEIIECMRLKIVPSGLW----PLTTLSNLKLGYMPFD 844 (866)
Q Consensus 807 p~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~~~~~ 844 (866)
++|+.|++++|. +..+|..+. .++++..|++.+||+.
T Consensus 388 ~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 468888888875 456665443 3477888888888854
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1.8e-15 Score=162.89 Aligned_cols=257 Identities=20% Similarity=0.076 Sum_probs=109.3
Q ss_pred cCCCCceEEEeeCCCCc-----cccccccCCCCccEEecCCCcccc-------ccccccccccccEEeccCccccccCCC
Q 038220 586 GNLIHLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLVDP-------IPLVIWKMQQLKHVYFSEFREMVVNPP 653 (866)
Q Consensus 586 ~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~~~~~~~~p~ 653 (866)
..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++|++|++++|......+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 33444555555555542 234444444455555555443321 223344455555555555443311111
Q ss_pred CCCCC---CCCceecceeecCC----cchhHhhccc-cCCCeEEEEcccch--hHHHHHHhhcCCCCCcEEEeeeccccc
Q 038220 654 ADASL---PNLQTLLGICICET----SCVEQGLDKL-LNLRELGLHGDLIL--HEEALCKWIYNLKGLQCLKMQSRITYT 723 (866)
Q Consensus 654 ~~~~l---~~L~~L~~~~~~~~----~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~l~~~l~~~~~L~~L~l~~~~~~~ 723 (866)
.+..+ ++|+.|++.++... ..+...+..+ ++|+.|++.+|... ....+...+..+++|+.|++++|.+..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 11111 22444444433222 1112224444 56666666666543 222334445555556666665544321
Q ss_pred cccC---CccCCCCCceEEEEEeecCCCCC----ccccCCCCCCCeeEEeccccCCCeEEECC----CCCccccEEEeec
Q 038220 724 VDLS---DVQNFPPNLTELSLQFCFLTEDP----LKELEKLPNLRVLKLKQSSYLGKEMVSSS----GGFSQLQFLKLSN 792 (866)
Q Consensus 724 ~~l~---~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~----~~~~~L~~L~l~~ 792 (866)
..++ ..+...++|+.|+|++|.+.+.. ...+..+++|++|++++|.+.+..+..-. ...++|++|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 1111 11122345666666666554322 12234455666666655554421110000 1235566666665
Q ss_pred CCCCc----ceEEccCcccccceeeEeecccCCc----cCCCccCC-CCCCEEEEeCCC
Q 038220 793 LCYLE----RWRIEEGAMCNLRRLEIIECMRLKI----VPSGLWPL-TTLSNLKLGYMP 842 (866)
Q Consensus 793 ~~~l~----~~~~~~~~~p~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~ 842 (866)
|.... .+......+++|+.|++++|..-.. +...+... +.|++|++.++|
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 54321 1111222345566666665554321 22222333 455666655554
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.2e-15 Score=133.67 Aligned_cols=156 Identities=26% Similarity=0.328 Sum_probs=126.6
Q ss_pred cCCCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccE
Q 038220 538 SQTRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQS 616 (866)
Q Consensus 538 ~~~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 616 (866)
+.+..+++...|.++++ -...+..+..+++|++|++++|+++++|.+++.++.||.|++.-|.+..+|..++.++-|+.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 34455667777777766 34556677788889999999999999999999999999999998888899999999999999
Q ss_pred EecCCC--ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 617 LDLSST--LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 617 L~l~~~--~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
||+.+| +-..+|..+..+..|+-|++++|.+. .+|+.++++++||.|.+..+...+ +|..++.++.|++|+|.++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccce
Confidence 999888 44578988999999999999988776 788899999999999888774443 44448888888888888876
Q ss_pred c
Q 038220 695 I 695 (866)
Q Consensus 695 ~ 695 (866)
.
T Consensus 185 l 185 (264)
T KOG0617|consen 185 L 185 (264)
T ss_pred e
Confidence 3
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=3.1e-13 Score=156.24 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=166.3
Q ss_pred CCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCC
Q 038220 544 SRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSST 622 (866)
Q Consensus 544 ~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 622 (866)
+.++.|.+.++ -..++..+ +++|+.|++++|.+..+|..+. .+|+.|+|++|.+..+|..+. .+|++|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 57888888877 22233322 2479999999999998887654 479999999999999998775 58999999999
Q ss_pred ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHH
Q 038220 623 LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALC 702 (866)
Q Consensus 623 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 702 (866)
.+..+|..+. .+|++|++++|... .+|..+. ++|+.|++.++... .++..+ .++|+.|.+++|.... ++
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~---LP 341 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS---LP 341 (754)
T ss_pred ccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc---CC
Confidence 8889987664 58999999999766 6776543 47888888877443 333322 3588888888886532 33
Q ss_pred HhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEE----C
Q 038220 703 KWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVS----S 778 (866)
Q Consensus 703 ~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~----~ 778 (866)
..+ .++|+.|++++|.+. .+|..+ +++|+.|+|++|.++.. +..+. ++|+.|++++|.+.. ++. .
T Consensus 342 ~~l--~~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~--LP~sl~~~ 410 (754)
T PRK15370 342 ASL--PPELQVLDVSKNQIT--VLPETL--PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVR--LPESLPHF 410 (754)
T ss_pred hhh--cCcccEEECCCCCCC--cCChhh--cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCccc--CchhHHHH
Confidence 333 268999999887642 455433 46899999999987643 33332 368888998887753 332 2
Q ss_pred CCCCccccEEEeecCCCCcceEEccCccccccee
Q 038220 779 SGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRL 812 (866)
Q Consensus 779 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 812 (866)
...++++..|++.+|+.. ...+++|+.|
T Consensus 411 ~~~~~~l~~L~L~~Npls------~~tl~~L~~L 438 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFS------ERTIQNMQRL 438 (754)
T ss_pred hhcCCCccEEEeeCCCcc------HHHHHHHHHh
Confidence 345678888999887643 2456666666
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-15 Score=132.17 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=47.4
Q ss_pred CCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecc
Q 038220 587 NLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLG 666 (866)
Q Consensus 587 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~ 666 (866)
++.+...|.|++|.++.+|+.|..|.+|+.|++.+|.+.++|..++.+++|++|+++-|+.. ..|.++|+++.|+.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34445555555665555565666666666666655566666666666666666665554443 55666666666666555
Q ss_pred eee
Q 038220 667 ICI 669 (866)
Q Consensus 667 ~~~ 669 (866)
.++
T Consensus 110 tyn 112 (264)
T KOG0617|consen 110 TYN 112 (264)
T ss_pred ccc
Confidence 554
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=3e-13 Score=158.75 Aligned_cols=205 Identities=24% Similarity=0.224 Sum_probs=142.5
Q ss_pred CcCCCCCCCceEEEecCCCCCccccccCCCeeEEEEecCCc--cccCcc-cccCCCCceEEEeeCCC-CccccccccCCC
Q 038220 537 PSQTRKSSRVRSLLFFDISEPVGSILEEYKLLQVLDLEGVY--MALIDS-SIGNLIHLRYLDLRKTW-LKMLPSSMGNLF 612 (866)
Q Consensus 537 ~~~~~~~~~lr~L~~~~~~~~~~~~~~~~~~Lr~L~l~~~~--~~~lp~-~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~ 612 (866)
.+...+...+|.+.+.++.......-..++.|++|-+.++. +..++. .+..|++|++|||++|. +.+||++|++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 34455667788888877621111222344579999998885 555654 47789999999999765 789999999999
Q ss_pred CccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecC--C-cchhHhhccccCCCeEE
Q 038220 613 NLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICE--T-SCVEQGLDKLLNLRELG 689 (866)
Q Consensus 613 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~--~-~~~~~~l~~l~~L~~L~ 689 (866)
+|++|+++++.+..+|.++.+|.+|.||++..+......|.....|++|++|.++.... . ..+.+ +.++.+|+.+.
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhhe
Confidence 99999999999999999999999999999999887755665566699999999887642 1 22333 66777777777
Q ss_pred EEcccchhHHHHHHhhcCCCCCc----EEEeeeccccccccCCccCCCCCceEEEEEeecCCC
Q 038220 690 LHGDLILHEEALCKWIYNLKGLQ----CLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTE 748 (866)
Q Consensus 690 l~~~~~~~~~~l~~~l~~~~~L~----~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 748 (866)
+...... +...+..+..|. .+.+.++. ....+.....+.+|+.|.+.+|...+
T Consensus 675 ~~~~s~~----~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 675 ITISSVL----LLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred eecchhH----hHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCch
Confidence 7554321 111122222222 22222211 23344455667899999999998754
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=5.2e-13 Score=153.25 Aligned_cols=240 Identities=17% Similarity=0.074 Sum_probs=156.0
Q ss_pred CceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCc
Q 038220 545 RVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTL 623 (866)
Q Consensus 545 ~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~ 623 (866)
+++.|.+.++ -..+|. ..+.|+.|++++|.+..+|.. .++|+.|++++|.++.+|... .+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCc
Confidence 5666666655 122222 246788888888888877753 357888888888888777633 467788888888
Q ss_pred cccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHH
Q 038220 624 VDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCK 703 (866)
Q Consensus 624 ~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 703 (866)
+..+|.. +++|++|++++|... .+|... .+|+.|.+.++.. ..+|. + ..+|+.|++++|.+.. ++.
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L-~~LP~-l--p~~Lq~LdLS~N~Ls~---LP~ 359 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQL-TSLPT-L--PSGLQELSVSDNQLAS---LPT 359 (788)
T ss_pred ccccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCcc-ccccc-c--ccccceEecCCCccCC---CCC
Confidence 8888753 467888888888665 555432 3456666665532 23332 1 1478888888876532 221
Q ss_pred hhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCc
Q 038220 704 WIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFS 783 (866)
Q Consensus 704 ~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 783 (866)
..++|..|++++|.+. .+|.. +.+|+.|+|++|.+...+ . ..++|+.|++++|.+.. +|. .+.
T Consensus 360 ---lp~~L~~L~Ls~N~L~--~LP~l---~~~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~Lss--IP~---l~~ 422 (788)
T PRK15387 360 ---LPSELYKLWAYNNRLT--SLPAL---PSGLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTS--LPM---LPS 422 (788)
T ss_pred ---CCcccceehhhccccc--cCccc---ccccceEEecCCcccCCC-C---cccCCCEEEccCCcCCC--CCc---chh
Confidence 1246777777776532 35542 357888888888776422 1 13578888888887763 332 234
Q ss_pred cccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCC
Q 038220 784 QLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPS 825 (866)
Q Consensus 784 ~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~ 825 (866)
+|+.|++++|. +..+|..++.+++|+.|+|++|+.....|.
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 68888888765 456777777888888899888876544333
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=2.5e-10 Score=126.31 Aligned_cols=318 Identities=14% Similarity=0.148 Sum_probs=185.8
Q ss_pred CCCCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
..+..++||++++++|...+... +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 45678999999999999998553 2334567899999999999999999853222212235677766666778888999
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh------hHHHHHhhCCCCC-CCcEEEEEecchhh
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE------AWDDLKAVFPDAK-NGSRIIFTTRFKDV 311 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~-~gs~iivTtR~~~v 311 (866)
+.++..... .....+.+++...+.+.+. ++..+||||+++... .+..+...+.... ....+|.++....+
T Consensus 107 ~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPP-PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 988876311 1122345677777777775 456899999997642 2334433332221 12235666554433
Q ss_pred hhccCC------CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCC-hhHHHHHHHHHHHcCCchhHHHHHhhhc--c--
Q 038220 312 AVYADP------GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLP-PWSRELGKQIVKKCGGLPLAIVVLGGLL--S-- 380 (866)
Q Consensus 312 ~~~~~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~i~~~l--~-- 380 (866)
...... ....+.+.+++.++..+++..++...-.. ...+ ..++.+++......|..+.|+.++-... +
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 222111 11467899999999999998876432111 1122 2233333333333566777777664322 1
Q ss_pred C-C-CCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCC--CcccchHHHHHH--HHHcCccc
Q 038220 381 S-K-EATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPE--DFEIAARKLILL--WVAEGFVQ 454 (866)
Q Consensus 381 ~-~-~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~--~~~i~~~~li~~--W~aeg~i~ 454 (866)
. . .-+.+....+++... .....-.+..||.+.|..+..++...+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 1 114555555554431 123445688999998888776654321 123444444432 23322110
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCccccccc--cCCCcEeEEEEc
Q 038220 455 PRGIEPLEDVAEDYLEELVGRSMVEPASR--KSNGKIKTIRVH 495 (866)
Q Consensus 455 ~~~~~~~e~~~~~~l~~L~~~~ll~~~~~--~~~~~~~~~~~h 495 (866)
. .........|+..|...++|..... +..|+.+.+.++
T Consensus 335 ~---~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 E---PRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred C---cCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 0 1123556779999999999987543 233455555554
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=5.5e-11 Score=146.93 Aligned_cols=297 Identities=11% Similarity=0.126 Sum_probs=180.0
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-YRKWEILQDLCK 242 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~ 242 (866)
....+|-|+.-.+. |... ...+++.|+|++|.||||++..+... +..++|+++... .+...+...++.
T Consensus 12 ~~~~~~~R~rl~~~----l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRERLLAK----LSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcchHHHHH----Hhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 34466666655444 4332 24689999999999999999998862 226899999754 455566666666
Q ss_pred HHhcCCCC---c-------cccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh--h-HHHHHhhCCCCCCCcEEEEEec
Q 038220 243 KVLGLGKA---D-------LDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE--A-WDDLKAVFPDAKNGSRIIFTTR 307 (866)
Q Consensus 243 ~~~~~~~~---~-------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~iivTtR 307 (866)
.+...... . ....+...+...+...+. +.+++|||||++..+ . .+.+...+.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 66432111 0 011122333433433333 679999999997642 2 2334333444456678989999
Q ss_pred chhhhh--ccCCCCCCeecc----CCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccC
Q 038220 308 FKDVAV--YADPGSPPYELC----LLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSS 381 (866)
Q Consensus 308 ~~~v~~--~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~ 381 (866)
...-.. .........++. +|+.+|+.++|........ -.+....|.+.|+|.|+++..++..+..
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 742111 000111345555 8999999999976543211 1456788999999999999998877654
Q ss_pred CCCCHHHHHHHHHhhhhhccC-CChhHHHHH-HHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCC
Q 038220 382 KEATYSEWLKVLQSVQWQLNL-NPAKCMDIL-KLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIE 459 (866)
Q Consensus 382 ~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~l-~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 459 (866)
...+... ... .+.. +...+...+ .-.++.||++.+..+...|+++ .++...+-... |
T Consensus 232 ~~~~~~~---~~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~-------- 290 (903)
T PRK04841 232 NNSSLHD---SAR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G-------- 290 (903)
T ss_pred CCCchhh---hhH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C--------
Confidence 3321111 011 1111 113344443 3347899999999999999996 23322222110 1
Q ss_pred CHHHHHHHHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHHHHhh
Q 038220 460 PLEDVAEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKA 506 (866)
Q Consensus 460 ~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~ 506 (866)
.+.+...+++|.+.+++...... ++ ..|+.|++++++.....
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 12357789999999996532211 11 25788999999998764
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=6.2e-14 Score=150.89 Aligned_cols=260 Identities=20% Similarity=0.095 Sum_probs=170.9
Q ss_pred cccccCCCeeEEEEecCCccc-----cCcccccCCCCceEEEeeCCCCcc-------ccccccCCCCccEEecCCCccc-
Q 038220 559 GSILEEYKLLQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTWLKM-------LPSSMGNLFNLQSLDLSSTLVD- 625 (866)
Q Consensus 559 ~~~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-------lp~~i~~l~~L~~L~l~~~~~~- 625 (866)
...+..+..|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345556666888888888762 456667777788888888876652 3455677888899999888554
Q ss_pred ccccccccccc---ccEEeccCccccc----cCCCCCCCC-CCCceecceeecCC----cchhHhhccccCCCeEEEEcc
Q 038220 626 PIPLVIWKMQQ---LKHVYFSEFREMV----VNPPADASL-PNLQTLLGICICET----SCVEQGLDKLLNLRELGLHGD 693 (866)
Q Consensus 626 ~lp~~i~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~ 693 (866)
..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.++... ..+...+..+++|++|++.+|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 34444444444 8899888876541 122234455 78888888887544 123344667788999999888
Q ss_pred cchh--HHHHHHhhcCCCCCcEEEeeeccccc---cccCCccCCCCCceEEEEEeecCCCCCccccC-----CCCCCCee
Q 038220 694 LILH--EEALCKWIYNLKGLQCLKMQSRITYT---VDLSDVQNFPPNLTELSLQFCFLTEDPLKELE-----KLPNLRVL 763 (866)
Q Consensus 694 ~~~~--~~~l~~~l~~~~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L 763 (866)
.... ...+...+..+++|++|++++|.+.. ..++..+..+++|+.|++++|.+.+..+..+. ..++|+.|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 7542 23455566677899999998875431 22334455668899999999987653322222 24789999
Q ss_pred EEeccccCCC---eEEECCCCCccccEEEeecCCCCcc----eEEccCcc-cccceeeEeecc
Q 038220 764 KLKQSSYLGK---EMVSSSGGFSQLQFLKLSNLCYLER----WRIEEGAM-CNLRRLEIIECM 818 (866)
Q Consensus 764 ~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~-p~L~~L~l~~c~ 818 (866)
++++|.+++. .+......+++|++|++++|..-.. +......+ +.|+.|++.+++
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9988877531 1222345668899999998775433 11122234 688888887765
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=4.2e-15 Score=149.27 Aligned_cols=98 Identities=26% Similarity=0.232 Sum_probs=72.0
Q ss_pred cccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcce-EEccCcccccceeeEeecccCCccCCCccCC
Q 038220 752 KELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERW-RIEEGAMCNLRRLEIIECMRLKIVPSGLWPL 830 (866)
Q Consensus 752 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l 830 (866)
..+..||+|+.|+|++|.++. .-..++.+..+|+.|.|..|.. +.+ ...+..+..|+.|+|.+|.....-|..+..+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 447788888888888888765 3345677788888888887653 322 2234567788888998888766667788888
Q ss_pred CCCCEEEEeCCCHHHHHHHhh
Q 038220 831 TTLSNLKLGYMPFDFDLMAQD 851 (866)
Q Consensus 831 ~~L~~L~l~~~~~~~~~~~~~ 851 (866)
.+|.+|++-.||+-..+++.|
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred ceeeeeehccCcccCccchHH
Confidence 899999998888766666655
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=8.3e-09 Score=112.94 Aligned_cols=304 Identities=17% Similarity=0.107 Sum_probs=175.9
Q ss_pred CCCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccc-cCCC---CceEEEEeCCCCCHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDV-KKHF---DCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f---~~~~wv~v~~~~~~~~~~ 237 (866)
.++.++||++++++|..++... +.....+.|+|++|+|||++++.++++..- .... -..+|+.+....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4458999999999999998752 223457899999999999999999974211 0111 135777777766778899
Q ss_pred HHHHHHHhc--CCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh-----hHHHHHhhC--CCCC-CCcEEEEE
Q 038220 238 QDLCKKVLG--LGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE-----AWDDLKAVF--PDAK-NGSRIIFT 305 (866)
Q Consensus 238 ~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----~~~~l~~~l--~~~~-~gs~iivT 305 (866)
..+++++.. ... +....+..+....+.+.+. +++++||||+++... ....+.... .... ....+|.+
T Consensus 93 ~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 93 VELANQLRGSGEEV-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHhhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999998852 111 1122234555566666663 567899999997651 122332221 1111 22344555
Q ss_pred ecchhhhhccC----CC--CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH-HHHhhh
Q 038220 306 TRFKDVAVYAD----PG--SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI-VVLGGL 378 (866)
Q Consensus 306 tR~~~v~~~~~----~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai-~~i~~~ 378 (866)
+.......... .. ...+.+.+++.++..+++..++.....+ ...+++..+...+++....|.|-.+ .++-..
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYD-GVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccC-CCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 54332211111 11 1468899999999999998886421111 1233444445566777777888433 332211
Q ss_pred c--c--C--CCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCC--CCcccchHHHHHHH--H
Q 038220 379 L--S--S--KEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFP--EDFEIAARKLILLW--V 448 (866)
Q Consensus 379 l--~--~--~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp--~~~~i~~~~li~~W--~ 448 (866)
. . . ..-+.+....+.+... .....-++..||.+.+..+..++..- .+..+....+...+ +
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 1 1123444444444331 12334567789998887776655321 33345555555533 2
Q ss_pred HcCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 449 AEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 449 aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
++.+ .. ..........++..|...|++....
T Consensus 321 ~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDI-GV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2211 11 1123567888999999999998754
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=3.1e-09 Score=110.95 Aligned_cols=181 Identities=20% Similarity=0.227 Sum_probs=112.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
...+.|+|++|+||||+++.+++.... ..+ ...|+ +....+..+++..+...++.... ..+.......+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~----~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE----GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHH
Confidence 358999999999999999999985321 111 12333 33445677888888877654311 112223333333322
Q ss_pred -----ccCcEEEEEecCCChh--hHHHHHhhCC---CCCCCcEEEEEecchhhhhccC---------CCCCCeeccCCCh
Q 038220 269 -----QERRFIIVLDDIWEKE--AWDDLKAVFP---DAKNGSRIIFTTRFKDVAVYAD---------PGSPPYELCLLNE 329 (866)
Q Consensus 269 -----~~k~~LlVlDdv~~~~--~~~~l~~~l~---~~~~gs~iivTtR~~~v~~~~~---------~~~~~~~l~~L~~ 329 (866)
.+++.++|+||++... .++.+..... +......|++|....- ..... .....+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 5788999999998753 5565553322 1222234556654332 11111 1124678999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhc
Q 038220 330 EDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLL 379 (866)
Q Consensus 330 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l 379 (866)
+|..+++.......+.. ....--.+..+.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~--~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNR--DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999998776543211 1112235788999999999999999888776
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=8.2e-10 Score=112.84 Aligned_cols=196 Identities=20% Similarity=0.141 Sum_probs=100.4
Q ss_pred eeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH-------
Q 038220 168 IVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL------- 240 (866)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i------- 240 (866)
|+||+++++.|.+++..+. .+.+.|+|+.|+|||+|++++.+. .+..-..++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN-ESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh-hhHHHHHHHHHHHH
Confidence 6899999999999998753 458999999999999999999983 322212345554444332 2222222
Q ss_pred ---HHHHhcC-CCCc------cccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh--------hHHHHHhh---CCCCC
Q 038220 241 ---CKKVLGL-GKAD------LDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE--------AWDDLKAV---FPDAK 297 (866)
Q Consensus 241 ---~~~~~~~-~~~~------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~--------~~~~l~~~---l~~~~ 297 (866)
.+.+... .... ............+.+.+. +++++||+||+.... ....+... .....
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1112111 0000 011122233333333343 456999999986544 11223322 22344
Q ss_pred CCcEEEEEecchhhhhc-------cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 298 NGSRIIFTTRFKDVAVY-------ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 298 ~gs~iivTtR~~~v~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
+.+.|+++|. ...... .......+.+++|+.+++++++....-.. . .. +.-.+..++|+..+||+|.
T Consensus 156 ~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~---~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 156 NVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I---KL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp TEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTT-HH
T ss_pred CceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h---cc-cCCHHHHHHHHHHhCCCHH
Confidence 4444444444 333222 11112459999999999999998865432 1 11 1124566999999999998
Q ss_pred HHHH
Q 038220 371 AIVV 374 (866)
Q Consensus 371 ai~~ 374 (866)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=2.2e-12 Score=129.97 Aligned_cols=257 Identities=18% Similarity=0.070 Sum_probs=154.1
Q ss_pred CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeC-CCCccccc-cccCCCCccEEecCCCccccccc-c
Q 038220 555 SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRK-TWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPL-V 630 (866)
Q Consensus 555 ~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~-~ 630 (866)
....+..|+.++.||.|||+.|.+..+ |+.+..+..|-.|-+.+ |+|+.+|+ .++.|..|+-|.+.-|.+..++. .
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 455667788888888888888887644 66777777776665554 77888885 57778888888887776666553 4
Q ss_pred ccccccccEEeccCccccccCCC-CCCCCCCCceecceeecCC--cchhH----------hhccccCCCeEEEEcccch-
Q 038220 631 IWKMQQLKHVYFSEFREMVVNPP-ADASLPNLQTLLGICICET--SCVEQ----------GLDKLLNLRELGLHGDLIL- 696 (866)
Q Consensus 631 i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~--~~~~~----------~l~~l~~L~~L~l~~~~~~- 696 (866)
+..+++|..|.+.++..- .++. .+..+.+++++.+..+... ..++. +.+.........+.+....
T Consensus 160 l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q 238 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQ 238 (498)
T ss_pred HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcc
Confidence 677888888888877654 4444 5666777777766544321 11111 0111111111111110000
Q ss_pred -hHHHHHHhhcCCCCCcEE--EeeeccccccccC-CccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCC
Q 038220 697 -HEEALCKWIYNLKGLQCL--KMQSRITYTVDLS-DVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLG 772 (866)
Q Consensus 697 -~~~~l~~~l~~~~~L~~L--~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 772 (866)
....+.. .++++ .+..+.......| ..+..+++|++|+|++|.++......+..+..+++|.|..|.+..
T Consensus 239 ~~a~kf~c------~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~ 312 (498)
T KOG4237|consen 239 EDARKFLC------SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF 312 (498)
T ss_pred cchhhhhh------hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH
Confidence 0000100 01111 1111111112222 235567888888888888877666778888888888887777542
Q ss_pred CeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeeccc
Q 038220 773 KEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 773 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~ 819 (866)
.-...+.++..|+.|+|.+|++..--+..+..+.+|.+|++..||.
T Consensus 313 -v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 313 -VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred -HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 1122356788888888888876555556666777888888887764
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=9.5e-09 Score=109.89 Aligned_cols=279 Identities=16% Similarity=0.102 Sum_probs=149.0
Q ss_pred CCCCeeechhhHHHHHHHHhc---CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIH---GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
.-.+|+|+++.++.+..++.. .......+.|+|++|+||||||+.+++. ....+ .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHH
Confidence 346799999999998888764 2334567889999999999999999984 22221 122111 11111222222
Q ss_pred HHHHhcCCC---CccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCC
Q 038220 241 CKKVLGLGK---ADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADP 317 (866)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 317 (866)
+..+....- ++..... ....+.+...+.+.+..+|+|+..+...+ ...+ ...+-|..|++...+......
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~---~~~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSI---RLDL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccce---eecC---CCceEEeecCCcccCCHHHHH
Confidence 222211000 0000000 11222233334444444444443322111 0011 123445556664443322111
Q ss_pred -CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhh
Q 038220 318 -GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSV 396 (866)
Q Consensus 318 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~ 396 (866)
....+++++++.++..+++.+.+..... ..+ .+....|++.|+|.|-.+..+...+ ..|....+
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~---~~~~~~ia~~~~G~pR~a~~~l~~~-------~~~a~~~~-- 234 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV---EID---EEGALEIARRSRGTPRIANRLLRRV-------RDFAQVKG-- 234 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcC---HHHHHHHHHHcCCCchHHHHHHHHH-------HHHHHHcC--
Confidence 1246899999999999999988765332 122 4678899999999996544444322 11211110
Q ss_pred hhhccCCC-hhHHHHHHHhcCCCCCchhhHHh-HhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHH-HHh
Q 038220 397 QWQLNLNP-AKCMDILKLSYQDLPYYLKPCFL-YIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLE-ELV 473 (866)
Q Consensus 397 ~~~~~~~~-~~~~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~ 473 (866)
........ ......+...+..|++..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|+
T Consensus 235 ~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li 302 (328)
T PRK00080 235 DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLI 302 (328)
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHH
Confidence 00010001 23334456677888888777775 66677655 56666654432 222445666677 899
Q ss_pred hCCcccccc
Q 038220 474 GRSMVEPAS 482 (866)
Q Consensus 474 ~~~ll~~~~ 482 (866)
+.+|++...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 999997443
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=6.4e-09 Score=110.61 Aligned_cols=277 Identities=15% Similarity=0.060 Sum_probs=148.4
Q ss_pred CCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.+|||+++.++++..++... ......+.++|++|+|||+||+.+++. ....+ ..+..+...... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 46899999999999888642 223556889999999999999999984 22222 122111111111 1222222
Q ss_pred HHhcCC---CCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCC-C
Q 038220 243 KVLGLG---KADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADP-G 318 (866)
Q Consensus 243 ~~~~~~---~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~-~ 318 (866)
.+.... -++..... ....+.+...+.+.+..+|+++..+...+.. .+ .+.+-|..||+...+...... .
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 221110 00001111 1223344555555555566665543332211 11 124455556665443322111 1
Q ss_pred CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhh
Q 038220 319 SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQW 398 (866)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~ 398 (866)
...+++++++.++..+++.+.+..... ..+ .+....|++.|+|.|-.+..++..+ |.........
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~---~~al~~ia~~~~G~pR~~~~ll~~~---------~~~a~~~~~~ 215 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV---EIE---PEAALEIARRSRGTPRIANRLLRRV---------RDFAQVRGQK 215 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC---CcC---HHHHHHHHHHhCCCcchHHHHHHHH---------HHHHHHcCCC
Confidence 246789999999999999987754321 122 4667889999999996655444332 1110000000
Q ss_pred hccCCC-hhHHHHHHHhcCCCCCchhhHHh-HhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHH-HHhhC
Q 038220 399 QLNLNP-AKCMDILKLSYQDLPYYLKPCFL-YIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLE-ELVGR 475 (866)
Q Consensus 399 ~~~~~~-~~~~~~l~~sy~~L~~~~k~cf~-~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~~ 475 (866)
...... ......+...|..++++.+..+. .++.++.+ .+....+.... ......++..++ .|++.
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------GEDADTIEDVYEPYLLQI 283 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------CCCcchHHHhhhHHHHHc
Confidence 000000 22223356678888888777666 55666533 45544444432 223456777788 69999
Q ss_pred Ccccccc
Q 038220 476 SMVEPAS 482 (866)
Q Consensus 476 ~ll~~~~ 482 (866)
+|++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997443
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.98 E-value=6.7e-08 Score=108.20 Aligned_cols=301 Identities=18% Similarity=0.176 Sum_probs=186.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~ 243 (866)
....|-|. ++++.|..+. +.+++.|..++|.|||||+..... +... =..+.|.++.... ++...+.-++..
T Consensus 18 ~~~~v~R~----rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccH----HHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHHH
Confidence 44455454 4455555543 579999999999999999999875 2222 2358999997654 566677777777
Q ss_pred HhcCCCC----------ccccCCHHHHHHHHHHHhc--cCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecc
Q 038220 244 VLGLGKA----------DLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 244 ~~~~~~~----------~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
+....+. .....+...+...+..-+. .++..+||||..-. .--..+...+.....+-..|||||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 7643111 1112233444555544443 46899999997643 2223444444556677889999997
Q ss_pred hhhhhccC--CCCCCeecc----CCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCC
Q 038220 309 KDVAVYAD--PGSPPYELC----LLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSK 382 (866)
Q Consensus 309 ~~v~~~~~--~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~ 382 (866)
..-..... .....++++ .++.+|+-++|....... --....+.+.+...|=+-|+..++-.++.+
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~---------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP---------LDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC---------CChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 75322111 111223333 378899999997754221 114567889999999999999998888733
Q ss_pred CCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHH
Q 038220 383 EATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLE 462 (866)
Q Consensus 383 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e 462 (866)
. +.+.-...++-....+ ..-...--++.||+++|..++.+|+++.- ...|+..-. -+
T Consensus 241 ~-~~~q~~~~LsG~~~~l------~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt------------g~ 297 (894)
T COG2909 241 T-SAEQSLRGLSGAASHL------SDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT------------GE 297 (894)
T ss_pred C-cHHHHhhhccchHHHH------HHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh------------cC
Confidence 2 2332222222111111 11223446789999999999999998541 223333211 13
Q ss_pred HHHHHHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHHHHhhcc
Q 038220 463 DVAEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKAKE 508 (866)
Q Consensus 463 ~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~ 508 (866)
+.+...+++|.+++|+-..-.+. ..-|+.|+++.+|.+.....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~---~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDE---GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCC---CceeehhHHHHHHHHhhhcc
Confidence 45778899999999976433222 24689999999999765554
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.6e-12 Score=121.81 Aligned_cols=198 Identities=24% Similarity=0.218 Sum_probs=122.6
Q ss_pred CccEEecCCCc--cccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEE
Q 038220 613 NLQSLDLSSTL--VDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGL 690 (866)
Q Consensus 613 ~L~~L~l~~~~--~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l 690 (866)
.||+|||+++. ...+...+..+.+|+.|.+.+.+.. +.+...+.+-.+|+.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld------------------------D~I~~~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD------------------------DPIVNTIAKNSNLVRLNL 241 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC------------------------cHHHHHHhccccceeecc
Confidence 46777777663 3344444556666666655554333 333333666677777777
Q ss_pred EcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCC-CCCceEEEEEeec--CCCCCcccc-CCCCCCCeeEEe
Q 038220 691 HGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNF-PPNLTELSLQFCF--LTEDPLKEL-EKLPNLRVLKLK 766 (866)
Q Consensus 691 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~--l~~~~~~~l-~~l~~L~~L~L~ 766 (866)
+.|...+..++.-.+.+|+.|.+|+|+|+....+.+...+.+ -++|+.|+|++|. +.......| .++|+|..|+|+
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 777665666666677788888888888865433333222222 4678888888883 222333333 568899999998
Q ss_pred ccccCCCeEEECCCCCccccEEEeecCCCCc-ceEEccCcccccceeeEeecccCCccCCCccCCCCCC
Q 038220 767 QSSYLGKEMVSSSGGFSQLQFLKLSNLCYLE-RWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLS 834 (866)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~ 834 (866)
.|..........+..|+.|++|.++.|..+. +-......+|+|.+|++.+|-.-+..-.....|++|+
T Consensus 322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 7654332333456678888889888887654 2334567888899999888854332222233445544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.3e-11 Score=121.38 Aligned_cols=216 Identities=21% Similarity=0.172 Sum_probs=143.9
Q ss_pred cccCcccccCCCCceEEEeeCCCCcccc--ccccCCCCccEEecCCC---ccccccccccccccccEEeccCccccccCC
Q 038220 578 MALIDSSIGNLIHLRYLDLRKTWLKMLP--SSMGNLFNLQSLDLSST---LVDPIPLVIWKMQQLKHVYFSEFREMVVNP 652 (866)
Q Consensus 578 ~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~---~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p 652 (866)
++++...=+++++|+...|+++.+...+ .....|++++.|||+.| +...+..-...|++|+.|+++.|... .|
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~--~~ 187 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS--NF 187 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc--CC
Confidence 3344444467888999999998887666 36778999999999988 44445555678889999998887654 11
Q ss_pred CCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc-cccCCccC
Q 038220 653 PADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT-VDLSDVQN 731 (866)
Q Consensus 653 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~-~~l~~~~~ 731 (866)
.++.. -..+++|+.|.++.|..+ ..++...+..+|+|+.|++.+|+.+. ...+ ..
T Consensus 188 --~~s~~-------------------~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~ 243 (505)
T KOG3207|consen 188 --ISSNT-------------------TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATS--TK 243 (505)
T ss_pred --ccccc-------------------hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecch--hh
Confidence 11100 113456777888888764 55666667778888888888874221 1111 23
Q ss_pred CCCCceEEEEEeecCCCC-CccccCCCCCCCeeEEeccccCCCeEEEC-----CCCCccccEEEeecCCCCcceEE--cc
Q 038220 732 FPPNLTELSLQFCFLTED-PLKELEKLPNLRVLKLKQSSYLGKEMVSS-----SGGFSQLQFLKLSNLCYLERWRI--EE 803 (866)
Q Consensus 732 ~~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~--~~ 803 (866)
.+..|+.|+|++|.+... .....+.||.|+.|+++.+.+.....+.. ...||+|++|++..|+.. .|+. ..
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l 322 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHL 322 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchh
Confidence 356788889988866443 23457788888888888887765333332 357889999999887762 2322 23
Q ss_pred CcccccceeeEeecccC
Q 038220 804 GAMCNLRRLEIIECMRL 820 (866)
Q Consensus 804 ~~~p~L~~L~l~~c~~l 820 (866)
..+++|+.|.+..++..
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 45678888887766543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=9.3e-11 Score=117.03 Aligned_cols=248 Identities=19% Similarity=0.166 Sum_probs=124.1
Q ss_pred cccCCCeeEEEEecCCccc-----cCcccccCCCCceEEEeeCCC----Ccccccc-------ccCCCCccEEecCCCcc
Q 038220 561 ILEEYKLLQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTW----LKMLPSS-------MGNLFNLQSLDLSSTLV 624 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~----i~~lp~~-------i~~l~~L~~L~l~~~~~ 624 (866)
....+..++.++|+||.+. .+.+.+.+.+.|+..+++.-- ..++|+. +-.+++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3445667788888888764 344556667778887777521 2244443 34566888888888722
Q ss_pred c-----cccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccch--h
Q 038220 625 D-----PIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLIL--H 697 (866)
Q Consensus 625 ~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~ 697 (866)
+ .+-.-+.++..|+||++.+|.....--..++. .|..|. ...-.+.-++|+.+....|... .
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 2 22234567788888888877543110000000 011111 0000233345555555544422 1
Q ss_pred HHHHHHhhcCCCCCcEEEeeeccccccc---cCCccCCCCCceEEEEEeecCCCCC----ccccCCCCCCCeeEEecccc
Q 038220 698 EEALCKWIYNLKGLQCLKMQSRITYTVD---LSDVQNFPPNLTELSLQFCFLTEDP----LKELEKLPNLRVLKLKQSSY 770 (866)
Q Consensus 698 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~ 770 (866)
...+...+..++.|+.+.+..|.+.... +...+..+++|+.|+|.+|.++... -..+..+|+|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 2233344455555555555554432111 1112234556666666666554322 12344556666666655554
Q ss_pred CCCe---EEEC-CCCCccccEEEeecCCCCcce----EEccCcccccceeeEeeccc
Q 038220 771 LGKE---MVSS-SGGFSQLQFLKLSNLCYLERW----RIEEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 771 ~~~~---~~~~-~~~~~~L~~L~l~~~~~l~~~----~~~~~~~p~L~~L~l~~c~~ 819 (866)
.... +... ...+|+|+.|.+.+|.....- .......|.|+.|+|.+|..
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3211 0000 124666777777666543321 11223467777777777764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.1e-10 Score=116.39 Aligned_cols=163 Identities=22% Similarity=0.182 Sum_probs=81.1
Q ss_pred hccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCc-cccCCC
Q 038220 679 LDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPL-KELEKL 757 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~l 757 (866)
...|++++.|+++.|-+.....++.....+++|+.|+++.|.+....-...-..+++|+.|.|+.|.++.... ..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4445666666666665555555555556666666666666543211111111234566666666666654322 234456
Q ss_pred CCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcce-EEccCcccccceeeEeecccCC-ccCCC-----ccCC
Q 038220 758 PNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERW-RIEEGAMCNLRRLEIIECMRLK-IVPSG-----LWPL 830 (866)
Q Consensus 758 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~l~~c~~l~-~lp~~-----l~~l 830 (866)
|+|+.|.|..|.... ....+...+..|+.|+|++|+.+..- ....+.+|.|+.|+++.|..-. .+|.. ...+
T Consensus 222 Psl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 666666665553211 12223334555666666665544321 1233455666666665554322 12322 2335
Q ss_pred CCCCEEEEeCCC
Q 038220 831 TTLSNLKLGYMP 842 (866)
Q Consensus 831 ~~L~~L~l~~~~ 842 (866)
++|+.|++..|+
T Consensus 301 ~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 301 PKLEYLNISENN 312 (505)
T ss_pred ccceeeecccCc
Confidence 556666665555
No 38
>PF05729 NACHT: NACHT domain
Probab=98.88 E-value=1.2e-08 Score=97.97 Aligned_cols=141 Identities=23% Similarity=0.264 Sum_probs=85.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHH---HHHHHHHHHHhcCCCCccccCCHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKH----FDCCAWAYVSQEYRKW---EILQDLCKKVLGLGKADLDKMHMEDMKE 262 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 262 (866)
|++.|+|.+|+||||+++.++.+-..... +...+|.......... .+...+..+.... . .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-I-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-h-----hhhHH---
Confidence 58999999999999999999875222221 4456677666543332 2222232222221 0 01111
Q ss_pred HHHHH-hccCcEEEEEecCCChhh---------HHH-HHhhCCC-CCCCcEEEEEecchhhhhc--cCCCCCCeeccCCC
Q 038220 263 ELSNF-LQERRFIIVLDDIWEKEA---------WDD-LKAVFPD-AKNGSRIIFTTRFKDVAVY--ADPGSPPYELCLLN 328 (866)
Q Consensus 263 ~l~~~-L~~k~~LlVlDdv~~~~~---------~~~-l~~~l~~-~~~gs~iivTtR~~~v~~~--~~~~~~~~~l~~L~ 328 (866)
.+... -..++++||+|++++... +.. +...++. ...+.+++||+|....... .-.....+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12122 247899999999875421 222 3333443 3568999999998766322 11222579999999
Q ss_pred hHHHHHHHHHH
Q 038220 329 EEDSCELLFKK 339 (866)
Q Consensus 329 ~~~~~~Lf~~~ 339 (866)
+++..+++.+.
T Consensus 152 ~~~~~~~~~~~ 162 (166)
T PF05729_consen 152 EEDIKQYLRKY 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.1e-11 Score=114.40 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=125.3
Q ss_pred CceEEEeeCCCCc--cccccccCCCCccEEecCCCcc-ccccccccccccccEEeccCccccccCCCCCCCCCCCceecc
Q 038220 590 HLRYLDLRKTWLK--MLPSSMGNLFNLQSLDLSSTLV-DPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLG 666 (866)
Q Consensus 590 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~ 666 (866)
.|+||||++..|+ .+-.-++.|.+|+.|.|.+..+ ..+...|.+-.+|+.|+++.|.......
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 4999999999887 4555667788899998888743 3455567788899999998876542211
Q ss_pred eeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCC-CCCcEEEeeecc--ccccccCCccCCCCCceEEEEEe
Q 038220 667 ICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNL-KGLQCLKMQSRI--TYTVDLSDVQNFPPNLTELSLQF 743 (866)
Q Consensus 667 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~-~~L~~L~l~~~~--~~~~~l~~~~~~~~~L~~L~L~~ 743 (866)
..-.+.+|+.|..|+++.|...... +...+.+. ++|..|+|++.. +....+......+|+|..|+|++
T Consensus 252 --------~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 252 --------LQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred --------HHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 1112455555666666655432211 11112221 356666666521 11223334455678899999998
Q ss_pred e-cCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccc
Q 038220 744 C-FLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLR 810 (866)
Q Consensus 744 ~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~ 810 (866)
| .++.+....+-+++.|++|+++.|..........+...|+|.+|++.+|-.-.........+|+|+
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 7 555556667888999999999887654445555678899999999998754332222223455554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.2e-09 Score=106.22 Aligned_cols=107 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred hccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCC
Q 038220 679 LDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLP 758 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~ 758 (866)
..-.+.++.|+++.|.+...+. +..+++|..|++++|. ...+..|-..+-|+++|.|+.|.+ +.++.+++|-
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~--Ls~~~Gwh~KLGNIKtL~La~N~i--E~LSGL~KLY 374 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL--LAECVGWHLKLGNIKTLKLAQNKI--ETLSGLRKLY 374 (490)
T ss_pred hhhccceeEEeccccceeeehh----hhhcccceEeecccch--hHhhhhhHhhhcCEeeeehhhhhH--hhhhhhHhhh
Confidence 3334444444444444322221 3334444444444433 122223333344444555544433 1223344444
Q ss_pred CCCeeEEeccccCCCeEEECCCCCccccEEEeecC
Q 038220 759 NLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNL 793 (866)
Q Consensus 759 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 793 (866)
+|.+|++++|.+...+-+..++++|.|+.|.|.+|
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 44445554444432222223334444444444433
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=9.7e-10 Score=109.87 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=157.4
Q ss_pred cccCCCCceEEEeeCCCCc-----cccccccCCCCccEEecCCC----cccccccc-------ccccccccEEeccCccc
Q 038220 584 SIGNLIHLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSST----LVDPIPLV-------IWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 584 ~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~----~~~~lp~~-------i~~l~~L~~L~l~~~~~ 647 (866)
.+..+..+.+++|++|.+. .+.+.+.+.++|+..++++- ...++|.. +-.+++|++|+|++|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455778999999999886 45566777788888888764 22344433 34456777777777644
Q ss_pred cccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchh--HHH---------HHHhhcCCCCCcEEEe
Q 038220 648 MVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILH--EEA---------LCKWIYNLKGLQCLKM 716 (866)
Q Consensus 648 ~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~---------l~~~l~~~~~L~~L~l 716 (866)
....++ .+.+.|.++.+|++|.+.+|.... ... ......+.+.|+.+..
T Consensus 105 G~~g~~--------------------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 105 GPKGIR--------------------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred CccchH--------------------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 322222 122235556666666666664321 111 2234556689999998
Q ss_pred eeccccccc---cCCccCCCCCceEEEEEeecCCCCCc----cccCCCCCCCeeEEeccccCCC---eEEECCCCCcccc
Q 038220 717 QSRITYTVD---LSDVQNFPPNLTELSLQFCFLTEDPL----KELEKLPNLRVLKLKQSSYLGK---EMVSSSGGFSQLQ 786 (866)
Q Consensus 717 ~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~ 786 (866)
..|.+-... +...+...+.|+.+.+..|.+..... ..+..+|+|+.|+|..|.++.. .+...+..+|+|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 887643221 22334556899999999998755433 3467899999999998887631 2223456788999
Q ss_pred EEEeecCCCCcceEE-----ccCcccccceeeEeecccCCc----cCCCccCCCCCCEEEEeCCCH
Q 038220 787 FLKLSNLCYLERWRI-----EEGAMCNLRRLEIIECMRLKI----VPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 787 ~L~l~~~~~l~~~~~-----~~~~~p~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.|++++|..-..... .....|+|+.|.+.+|..... +...+...+.|..|+|++|.+
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999999865433211 123589999999999986542 223455689999999999997
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=1.9e-07 Score=110.94 Aligned_cols=317 Identities=16% Similarity=0.187 Sum_probs=178.3
Q ss_pred CeeechhhHHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceE---EEEeCCCCC---HHHHHHH
Q 038220 167 DIVGLGEDMMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCA---WAYVSQEYR---KWEILQD 239 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~v~~~~~---~~~~~~~ 239 (866)
.++||+.+.+.|...+... .+...++.+.|..|+|||++++.|... +.+.+...+ +-....... ..+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999998763 344679999999999999999999973 333221111 111111111 1223333
Q ss_pred HHHHHhcC-------------------CC----------------C---ccccCCHHH-----HHHHHHHHhc-cCcEEE
Q 038220 240 LCKKVLGL-------------------GK----------------A---DLDKMHMED-----MKEELSNFLQ-ERRFII 275 (866)
Q Consensus 240 i~~~~~~~-------------------~~----------------~---~~~~~~~~~-----~~~~l~~~L~-~k~~Ll 275 (866)
++.++... +. + +......+. ....+..... .++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333111 00 0 001111111 2222333333 469999
Q ss_pred EEecCCCh--hhHHHHHhhCCCCC------CCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCC
Q 038220 276 VLDDIWEK--EAWDDLKAVFPDAK------NGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNA 346 (866)
Q Consensus 276 VlDdv~~~--~~~~~l~~~l~~~~------~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 346 (866)
|+||++-. ...+-+........ +..-.+.|.+.. .......+....+.|.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999532 22222222211111 111122333333 12222223347899999999999999987764322
Q ss_pred CCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCC-----CHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCc
Q 038220 347 MSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEA-----TYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYY 421 (866)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~-----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 421 (866)
....+..+.|+++..|+|+.+..+-..+....- ....|..-..... .....+.+...+..-.+.||..
T Consensus 237 -----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~--~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 -----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG--ILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred -----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC--CchhhHHHHHHHHHHHhcCCHH
Confidence 222567889999999999999988888766421 1233332211111 0001144566789999999999
Q ss_pred hhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHHHHhhCCccccccccCCC---cEeEE-EEcHH
Q 038220 422 LKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPASRKSNG---KIKTI-RVHDL 497 (866)
Q Consensus 422 ~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~---~~~~~-~~hdl 497 (866)
.|+.+...|++...++ ...|...|- .....++...++.|....++...+....+ ...+| ..|++
T Consensus 310 t~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 310 TREVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 9999999999976544 555555542 13456677777777766666533211111 11112 35899
Q ss_pred HHHHHHHhh
Q 038220 498 LRELAISKA 506 (866)
Q Consensus 498 v~~~~~~~~ 506 (866)
+++.+....
T Consensus 378 vqqaaY~~i 386 (849)
T COG3899 378 VQQAAYNLI 386 (849)
T ss_pred HHHHHhccC
Confidence 888885443
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=3.9e-10 Score=119.24 Aligned_cols=156 Identities=24% Similarity=0.197 Sum_probs=95.3
Q ss_pred ccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccc
Q 038220 558 VGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQL 637 (866)
Q Consensus 558 ~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 637 (866)
++.-+..|-.|..+.|+.|.+..+|..++++..|.||+|+.|.++.+|..++.|+ |+.|-+++|++..+|..++.+++|
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhH
Confidence 3344445555666666666666666667777777777777777777776666654 666667666667777667766667
Q ss_pred cEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEee
Q 038220 638 KHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQ 717 (866)
Q Consensus 638 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~ 717 (866)
.+|+.+.|... .+|..++.+.+|+.|....+......++ +..| .|..|++++|.. ..++..+.+|..|+.|-|.
T Consensus 169 ~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScNki---s~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 169 AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCNKI---SYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccCce---eecchhhhhhhhheeeeec
Confidence 77776666655 6666666666666666555522222233 4422 455666666543 3345556666666666666
Q ss_pred ecc
Q 038220 718 SRI 720 (866)
Q Consensus 718 ~~~ 720 (866)
+|.
T Consensus 243 nNP 245 (722)
T KOG0532|consen 243 NNP 245 (722)
T ss_pred cCC
Confidence 554
No 44
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.72 E-value=1.9e-06 Score=97.59 Aligned_cols=301 Identities=13% Similarity=0.079 Sum_probs=159.0
Q ss_pred CCCCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCcc--c-cCCCC--ceEEEEeCCCCCHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSD--V-KKHFD--CCAWAYVSQEYRKWE 235 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~-~~~f~--~~~wv~v~~~~~~~~ 235 (866)
.+..+.|||+++++|...|... .....++.|+|++|.|||+.++.|.+... . +.... .+++|.+..-.+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3467899999999999988752 22335788999999999999999986421 0 11122 257777776667888
Q ss_pred HHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc---cCcEEEEEecCCChh-----hHHHHHhhCCCCCCCcEEEE--E
Q 038220 236 ILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ---ERRFIIVLDDIWEKE-----AWDDLKAVFPDAKNGSRIIF--T 305 (866)
Q Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iiv--T 305 (866)
++..|.+++.... + .......+....+...+. ....+||||+++... .+-.+... + ...+++|+| +
T Consensus 833 IYqvI~qqL~g~~-P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGI 908 (1164)
T PTZ00112 833 AYQVLYKQLFNKK-P-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHHHcCCC-C-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEe
Confidence 8888888885531 1 122223344555555442 234689999997432 12222222 1 123455554 3
Q ss_pred ecchh--------hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhh
Q 038220 306 TRFKD--------VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGG 377 (866)
Q Consensus 306 tR~~~--------v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~ 377 (866)
+...+ +...+.. ..+...+++.++..+++..++..... .-.+..++-+|+.++...|-.-.|+.++-.
T Consensus 909 SNdlDLperLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe~A~g--VLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLENCKE--IIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred cCchhcchhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 32211 1112211 34677999999999999998864321 112223333444444444444456655544
Q ss_pred hccCCCC---CHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCC---CcccchHHHHHHH--HH
Q 038220 378 LLSSKEA---TYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPE---DFEIAARKLILLW--VA 449 (866)
Q Consensus 378 ~l~~~~~---~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~---~~~i~~~~li~~W--~a 449 (866)
....... +.++-..+.+... ...+.-....||.+.|-.+..+...-+ ...++...+.... ++
T Consensus 985 AgEikegskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lc 1054 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLV 1054 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHH
Confidence 4322111 2222222222111 112233446788887776654443211 2134443333322 23
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 450 EGFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 450 eg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
+-.-..-+....-+....++.+|...|+|....
T Consensus 1055 e~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1055 ETSGKYIGMCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCeEEecC
Confidence 200000011222226677778888888776543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=7.5e-09 Score=114.64 Aligned_cols=177 Identities=29% Similarity=0.296 Sum_probs=105.7
Q ss_pred cCCCeeEEEEecCCccccCcccccCCC-CceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 563 EEYKLLQVLDLEGVYMALIDSSIGNLI-HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
..++.+..|++.++.+..+|.....+. +|++|++++|.+..+|..+..+++|+.|++++|.+..+|.....+++|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 344567777777777777776666664 7777777777777776667777777777777777777776666777777777
Q ss_pred ccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 642 FSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
++++... .+|..++.+..|++|.+..+.....+.. +.++.++..+. +..+..
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~--------------------------l~~n~~ 244 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLE--------------------------LSNNKL 244 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccc--------------------------cCCcee
Confidence 7777665 5555444444555555544421111111 33333443333 333221
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccC
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYL 771 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 771 (866)
..++..+..+++|+.|+++.|.++... .++.+.+|+.|+++++.+.
T Consensus 245 --~~~~~~~~~l~~l~~L~~s~n~i~~i~--~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 245 --EDLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred --eeccchhccccccceeccccccccccc--cccccCccCEEeccCcccc
Confidence 122444555566777777777664433 2666677777777666554
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.1e-08 Score=96.25 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=27.1
Q ss_pred cCCCeeEEEEecCCccccCccccc-CCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccc-ccccccEE
Q 038220 563 EEYKLLQVLDLEGVYMALIDSSIG-NLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIW-KMQQLKHV 640 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L 640 (866)
.+...++.|+|.|+.+..+. .++ .+.+|+.|++++|.|+.++ .+..+.+|++|++++|.+..++..+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34456788888888887664 344 5778888888888888776 56778888888888888888865553 68888888
Q ss_pred eccCcccc
Q 038220 641 YFSEFREM 648 (866)
Q Consensus 641 ~l~~~~~~ 648 (866)
++++|...
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 88887654
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=5.9e-10 Score=113.78 Aligned_cols=285 Identities=18% Similarity=0.122 Sum_probs=134.4
Q ss_pred CceEEEecCCC----CCccccccCCCeeEEEEecCCcc-c--cCcccccCCCCceEEEeeCCC-Ccc--ccccccCCCCc
Q 038220 545 RVRSLLFFDIS----EPVGSILEEYKLLQVLDLEGVYM-A--LIDSSIGNLIHLRYLDLRKTW-LKM--LPSSMGNLFNL 614 (866)
Q Consensus 545 ~lr~L~~~~~~----~~~~~~~~~~~~Lr~L~l~~~~~-~--~lp~~i~~l~~L~~L~l~~~~-i~~--lp~~i~~l~~L 614 (866)
.++.|.+.++. ..+..+..+++++..|++.+|.. + .+...-.++.+|++|++..|. ++. +-.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555551 22334556777777777777752 1 111222346677777777643 431 11122345666
Q ss_pred cEEecCCC-cccc--ccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEE
Q 038220 615 QSLDLSST-LVDP--IPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLH 691 (866)
Q Consensus 615 ~~L~l~~~-~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~ 691 (866)
.+|++++| .+.. +......+.+|+.+.+.+|.... ...+...=..+..+-++++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~----------------------le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE----------------------LEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccccc----------------------HHHHHHHhccChHhhccchh
Confidence 77777666 3322 11122233334444333332110 00111101122233334433
Q ss_pred cccchhHHHHHHhhcCCCCCcEEEeeeccc-cccccCCccCCCCCceEEEEEeec-CCCCCccccC-CCCCCCeeEEecc
Q 038220 692 GDLILHEEALCKWIYNLKGLQCLKMQSRIT-YTVDLSDVQNFPPNLTELSLQFCF-LTEDPLKELE-KLPNLRVLKLKQS 768 (866)
Q Consensus 692 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L~~~ 768 (866)
.|...++..+...-..+..|+.|..+++.. ....+.......++|+.|-+.+|. +++.....++ +.+.|+.+++..+
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 443323333333333344555555544221 111112223344566666666663 2332333333 4566666666554
Q ss_pred ccCC-CeEEECCCCCccccEEEeecCCCCcce-----EEccCcccccceeeEeecccCCc-cCCCccCCCCCCEEEEeCC
Q 038220 769 SYLG-KEMVSSSGGFSQLQFLKLSNLCYLERW-----RIEEGAMCNLRRLEIIECMRLKI-VPSGLWPLTTLSNLKLGYM 841 (866)
Q Consensus 769 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~p~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~ 841 (866)
.... ..+.....++|.|+.|.++.|.....- .....++..|+.|.+.+||.+.. .-..+..|++|+++++.+|
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4221 112222346777777777766544322 11224566777777777776652 2234566777888888777
Q ss_pred CHHHHHHHhh
Q 038220 842 PFDFDLMAQD 851 (866)
Q Consensus 842 ~~~~~~~~~~ 851 (866)
..-+.+.+++
T Consensus 437 q~vtk~~i~~ 446 (483)
T KOG4341|consen 437 QDVTKEAISR 446 (483)
T ss_pred hhhhhhhhHH
Confidence 7555555544
No 48
>PTZ00202 tuzin; Provisional
Probab=98.67 E-value=1.4e-05 Score=84.06 Aligned_cols=167 Identities=8% Similarity=0.045 Sum_probs=101.0
Q ss_pred CCCCCeeechhhHHHHHHHHhcCC-CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGG-LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
.+.+.|+||+++..++...|...+ ...+++.|+|++|+|||||++.+..... ...++.-.. ...+++..++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~LL 330 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSVV 330 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHHH
Confidence 566799999999999999997532 2456999999999999999999997321 223332233 5789999999
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHh-c-cCcEEEEEecCC--Ch-hhHHHHHhhCCCCCCCcEEEEEecchhhh--hc
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFL-Q-ERRFIIVLDDIW--EK-EAWDDLKAVFPDAKNGSRIIFTTRFKDVA--VY 314 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-~-~k~~LlVlDdv~--~~-~~~~~l~~~l~~~~~gs~iivTtR~~~v~--~~ 314 (866)
.+++.. .......-.+.+.+.+.+.- . +++.+||+-==. +. ..+.+.. .|.....-|.|++----+... ..
T Consensus 331 ~ALGV~-p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 331 KALGVP-NVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHcCCC-CcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcc
Confidence 999863 11111111123333333322 2 567777765322 22 1233322 233344456777654433321 11
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
.-+.-..|.+..++.++|.++..+.
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhc
Confidence 1122267899999999998876553
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=4.7e-07 Score=91.14 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=91.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
.+.+.|+|++|+|||+|++.+++. .......+.|+.+.... ... . .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~--------------------~----~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS--------------------P----AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh--------------------H----HHHhhc
Confidence 357899999999999999999984 32223345677653210 000 0 111112
Q ss_pred ccCcEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecch----------hhhhccCCCCCCeeccCCChHHHH
Q 038220 269 QERRFIIVLDDIWEK---EAWDD-LKAVFPD-AKNGSRIIFTTRFK----------DVAVYADPGSPPYELCLLNEEDSC 333 (866)
Q Consensus 269 ~~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~----------~v~~~~~~~~~~~~l~~L~~~~~~ 333 (866)
. +.-+||+||+|.. ..|+. +...+.. ...|+.+||+|.+. .+...+..+ ..+++++++.++.+
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~~ 167 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQKI 167 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHHH
Confidence 1 3358999999863 45552 3333331 12355565544332 444444333 68899999999999
Q ss_pred HHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 334 ELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 334 ~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
+++.+.++...- ..+ +++..-|++.+.|..-.+..+
T Consensus 168 ~iL~~~a~~~~l---~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGI---ELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCC---CCC---HHHHHHHHHhccCCHHHHHHH
Confidence 999998875431 222 567778888888776555433
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.4e-07 Score=95.28 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=120.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
..+++|-+..+.++++ .+ .+.-...||++|+||||||+.+.. .....| ..++...+..+-++++++..
T Consensus 29 Q~HLlg~~~~lrr~v~---~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a 96 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---AG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA 96 (436)
T ss_pred hHhhhCCCchHHHHHh---cC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH
Confidence 3445555555444432 33 356677899999999999999998 344444 33444433333333333322
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEE--Eecchhh--hhccCCCCC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIF--TTRFKDV--AVYADPGSP 320 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v--~~~~~~~~~ 320 (866)
. .....+++.+|.+|.|+.-.. .+--..||...+|.-|+| ||-++.. ...+-....
T Consensus 97 ~-------------------~~~~~gr~tiLflDEIHRfnK-~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 97 R-------------------KNRLLGRRTILFLDEIHRFNK-AQQDALLPHVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H-------------------HHHhcCCceEEEEehhhhcCh-hhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 1 122347899999999975421 112234555667777777 5554432 111222337
Q ss_pred CeeccCCChHHHHHHHHHHHhCCCCCCCCCChhH-HHHHHHHHHHcCCchhHHH---HHhhhccCCCC--CHHHHHHHHH
Q 038220 321 PYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWS-RELGKQIVKKCGGLPLAIV---VLGGLLSSKEA--TYSEWLKVLQ 394 (866)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~---~i~~~l~~~~~--~~~~w~~~l~ 394 (866)
++.+++|+.++-.+++.+.+.............+ ++....++..++|---++- -++..+..... ..+...+.++
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~ 236 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQ 236 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHh
Confidence 8999999999999999884433221111111112 3466778888888764332 12222222221 2344444444
Q ss_pred hhhhhccC--CC-hhHHHHHHHhcCCCCCc
Q 038220 395 SVQWQLNL--NP-AKCMDILKLSYQDLPYY 421 (866)
Q Consensus 395 ~~~~~~~~--~~-~~~~~~l~~sy~~L~~~ 421 (866)
.-...... +. -++..++..|...=+++
T Consensus 237 ~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 237 RRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred hhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 33222221 11 45556666666554444
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3.3e-08 Score=109.54 Aligned_cols=173 Identities=24% Similarity=0.232 Sum_probs=132.1
Q ss_pred CCCCCceEEEecCC-CCCccccccCCC-eeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEe
Q 038220 541 RKSSRVRSLLFFDI-SEPVGSILEEYK-LLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLD 618 (866)
Q Consensus 541 ~~~~~lr~L~~~~~-~~~~~~~~~~~~-~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 618 (866)
...+.+..|.+.+. -..++.....++ +|+.|+++++.+..+|..++.++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 34467888888776 344455555664 8999999999999998889999999999999999999999888999999999
Q ss_pred cCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhH
Q 038220 619 LSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHE 698 (866)
Q Consensus 619 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 698 (866)
++++.+..+|..+..+..|+.|.++++... ..+..+.+++++..+.+..+.. ..++..++.+++++.|+++++.....
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee-eeccchhccccccceecccccccccc
Confidence 999999999988888888999999998654 6677788888888887555422 22234467777788888777764222
Q ss_pred HHHHHhhcCCCCCcEEEeeec
Q 038220 699 EALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 699 ~~l~~~l~~~~~L~~L~l~~~ 719 (866)
.. +....+++.|+++++
T Consensus 271 ~~----~~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS----LGSLTNLRELDLSGN 287 (394)
T ss_pred cc----ccccCccCEEeccCc
Confidence 11 445555666665554
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=1.3e-09 Score=115.32 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=72.3
Q ss_pred CccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccccccc
Q 038220 557 PVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQ 636 (866)
Q Consensus 557 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 636 (866)
.++....++..|++|+|+.|++..+|..++.|+ |+.|-+++|+++.+|..|+-+..|..||.+.|.+..+|..++.+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 344444555555555555555555555555433 5555555555555555555555555555555555555555555555
Q ss_pred ccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 637 LKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 637 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
|+.|++..|... .+|..++.| .|..|+++++ ....+|-.+.+|..|+.|-|.+|.
T Consensus 191 lr~l~vrRn~l~-~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 191 LRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHhhhhhh-hCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeeccCC
Confidence 555555555544 555555533 2455554444 334444445555555555555554
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=7.4e-07 Score=98.35 Aligned_cols=175 Identities=22% Similarity=0.197 Sum_probs=102.7
Q ss_pred CCeeechhhHHH---HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 166 EDIVGLGEDMMI---LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 166 ~~~vGr~~~~~~---l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.++||++..+.. +..++..+. ...+.|+|++|+||||+|+.+++. .... |+.++.......-++++++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 468888777555 666665543 457888999999999999999984 2222 2333322111111222221
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHH-hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEE--ecchh--hhhcc
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNF-LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFT--TRFKD--VAVYA 315 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~~~~ 315 (866)
..... ..+++.+|++|+++.. ...+.+...+.. +..++|. |.+.. +...+
T Consensus 83 --------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 83 --------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred --------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 11111 1457889999999865 344555555442 4445543 33322 11111
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
......+.+.+++.++...++.+........ . ...-.+....|++.|+|.+..+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~--~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERG--L-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcC--C-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1223678999999999999998765331100 0 0122466788999999998765433
No 54
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=1.5e-07 Score=85.35 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=80.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
+++.|.|+.|+||||++++++.+.. ....+++++.......... ..+ ..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-------------------~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-------------------DPD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-------------------hhh-hHHHHHHhhc
Confidence 6899999999999999999997522 2345677766553211000 000 2233333334
Q ss_pred cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhc-----cCCCCCCeeccCCChHHH
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVY-----ADPGSPPYELCLLNEEDS 332 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~-----~~~~~~~~~l~~L~~~~~ 332 (866)
.++.+|+||+++...+|......+.+.....+|++|+.+...... ..+....+++.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999999988888887777766667889999987655422 222235689999988764
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.9e-05 Score=84.47 Aligned_cols=295 Identities=17% Similarity=0.163 Sum_probs=163.7
Q ss_pred CCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-c-eEEEEeCCCCCHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-C-CAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~-~~wv~v~~~~~~~~~~~~i 240 (866)
+..+.+|+++++++...|... +..+.-+.|+|..|+|||+.++.++.. ++.... . +++|++-...+..+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 344899999999999888752 223344999999999999999999984 333321 2 7999999999999999999
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChhh-----HHHHHhhCCCCCCCcEEEEEe--cchhh
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKEA-----WDDLKAVFPDAKNGSRIIFTT--RFKDV 311 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~iivTt--R~~~v 311 (866)
++++... +.......+..+.+.+.+. ++.+++|||+++.... +-.+....... .++|++.. -+...
T Consensus 94 ~~~~~~~---p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 94 LNKLGKV---PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHcCCC---CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 9998743 2233445666667777665 5789999999975422 22222222222 45444433 22222
Q ss_pred hhccCC------CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-chhHHHHHhhhc--cCC
Q 038220 312 AVYADP------GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG-LPLAIVVLGGLL--SSK 382 (866)
Q Consensus 312 ~~~~~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~i~~~l--~~~ 382 (866)
.....+ ....+...|-+.+|-.+++..++-..-.+ ....+..-+.+..++..-+| .-.|+..+.... +..
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~-~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSA-GVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccC-CCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 222211 11347788899999999998887543222 23334444444444444443 334444433222 111
Q ss_pred CC----CHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCC
Q 038220 383 EA----TYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGI 458 (866)
Q Consensus 383 ~~----~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~ 458 (866)
.. +.+.-..+.. ..-...+.-....||.+.|..+.....-..+.....-.-.-.++.+-+-
T Consensus 248 ~~~~~v~~~~v~~a~~----------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~----- 312 (366)
T COG1474 248 EGSRKVSEDHVREAQE----------EIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLR----- 312 (366)
T ss_pred hCCCCcCHHHHHHHHH----------HhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhC-----
Confidence 10 1111111110 1112233445778888877665444433211111111111122222111
Q ss_pred CCHHHHHHHHHHHHhhCCccccccc
Q 038220 459 EPLEDVAEDYLEELVGRSMVEPASR 483 (866)
Q Consensus 459 ~~~e~~~~~~l~~L~~~~ll~~~~~ 483 (866)
. .+.....++++|...+++.....
T Consensus 313 ~-~~~~~~~ii~~L~~lgiv~~~~~ 336 (366)
T COG1474 313 T-SQRRFSDIISELEGLGIVSASLI 336 (366)
T ss_pred c-hHHHHHHHHHHHHhcCeEEeeec
Confidence 0 23445567778877787775543
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.6e-08 Score=98.71 Aligned_cols=131 Identities=23% Similarity=0.225 Sum_probs=101.3
Q ss_pred cccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEE
Q 038220 561 ILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHV 640 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 640 (866)
.....+.|+.|||++|.+..+..++.-++.+|.|++++|.|..+-. +..|++|+.|||++|.+.++-..-.++-|.+.|
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3445677999999999999888888889999999999999887764 788999999999999877776656688889999
Q ss_pred eccCccccccCCCCCCCCCCCceecceeecCCcchh--HhhccccCCCeEEEEcccc
Q 038220 641 YFSEFREMVVNPPADASLPNLQTLLGICICETSCVE--QGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 641 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~ 695 (866)
.+.+|... ...+++++-+|..|++.++.. ..+. ..+++++.|+.+.+.+|+.
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCc
Confidence 99887553 335677777888888777632 2222 2377777777777777764
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.2e-08 Score=99.66 Aligned_cols=84 Identities=21% Similarity=0.168 Sum_probs=58.3
Q ss_pred CCCCceEEEEEeecCCCC-CccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEE------ccC
Q 038220 732 FPPNLTELSLQFCFLTED-PLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRI------EEG 804 (866)
Q Consensus 732 ~~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~------~~~ 804 (866)
.+|++..+.+..|++... .-.....+|.+..|+|+.+++.++.-...+.+||+|..|.++.++.++.+.. .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 356777777877766433 2234556778888888888877666666778899999999998888776532 235
Q ss_pred cccccceeeEe
Q 038220 805 AMCNLRRLEII 815 (866)
Q Consensus 805 ~~p~L~~L~l~ 815 (866)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 66777776633
No 58
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=1.1e-07 Score=89.60 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=51.8
Q ss_pred CCCCCceEEEecCCC-CCcccccc-CCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccc-cCCCCccEE
Q 038220 541 RKSSRVRSLLFFDIS-EPVGSILE-EYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSM-GNLFNLQSL 617 (866)
Q Consensus 541 ~~~~~lr~L~~~~~~-~~~~~~~~-~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L 617 (866)
.++.++|.|.+.++. ..+ ..+. .+..|++|++++|.+..++ .+..+++|+.|++++|.|+.++..+ ..+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 345567777777762 222 2333 5678999999999998776 4778999999999999999987655 368999999
Q ss_pred ecCCCcccccc--ccccccccccEEeccCccccccCCC----CCCCCCCCceecceee
Q 038220 618 DLSSTLVDPIP--LVIWKMQQLKHVYFSEFREMVVNPP----ADASLPNLQTLLGICI 669 (866)
Q Consensus 618 ~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~~~~ 669 (866)
++++|.+..+- ..+..+++|++|++.+|... ..+. .+..+++|+.|+...+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 99999666553 35678999999999998765 2221 1345667777766554
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=5.8e-06 Score=87.84 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=114.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC----ccccCCCCceEEEEe-CCCCCHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS----SDVKKHFDCCAWAYV-SQEYRKWEILQDL 240 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~v-~~~~~~~~~~~~i 240 (866)
.+++|-+.-.+.+..++..+. -.....++|+.|+||||+|+.++.. .....|.|...|... +.....++ ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 467898888899999887654 2357789999999999999988862 123456665555442 22222222 2223
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCC--ChhhHHHHHhhCCCCCCCcEEEEEecchhhh-hccCC
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIW--EKEAWDDLKAVFPDAKNGSRIIFTTRFKDVA-VYADP 317 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~-~~~~~ 317 (866)
.+.+... -..+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. .-...
T Consensus 82 ~~~~~~~-------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 82 IEEVNKK-------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHhcC-------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222211 012455566677665 4567899999999888889999888655422 11122
Q ss_pred CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 318 GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
....+.+.+++.++....+.+.... . + .+.+..++..++|.|.-+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~-~------~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND-I------K---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC-C------C---HHHHHHHHHHcCCCHHHHH
Confidence 2378999999999998877654311 1 1 3446778999999886554
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=6.4e-07 Score=81.94 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=78.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCC-----CCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKH-----FDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEE 263 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 263 (866)
-+.+.|+|.+|+|||++++++.++ .... -..++|+.+....+...+...+++++...... ..+.+++.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCHHHHHHH
Confidence 468999999999999999999984 2111 23477999988888999999999999875222 3456777788
Q ss_pred HHHHhccCcE-EEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecc
Q 038220 264 LSNFLQERRF-IIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 264 l~~~L~~k~~-LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
+.+.+...+. +||+|+++.. ..++.++.... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888876654 9999999755 23455554443 566777777764
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.42 E-value=2.2e-05 Score=88.49 Aligned_cols=246 Identities=15% Similarity=0.155 Sum_probs=135.7
Q ss_pred CCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
-.+++|.++.++.+.+|+..- +...+.+.|+|++|+||||+|+.++++. .|+ .+-++.+... ....+..++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r-~~~~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQR-TADVIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccc-cHHHHHHHHH
Confidence 457999999999999998752 1226789999999999999999999852 122 2333333322 2223333333
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh------hHHHHHhhCCCCCCCcEEEEEecch-hhhh-c
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE------AWDDLKAVFPDAKNGSRIIFTTRFK-DVAV-Y 314 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~iivTtR~~-~v~~-~ 314 (866)
...... .....++-+||+|+++... .+..+...+.. .+..+|+|+.+. .... .
T Consensus 87 ~~~~~~-----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG-----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC-----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 222110 0011367899999997642 24555555442 233466665432 2211 1
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCC-CC-CHHHHHHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSK-EA-TYSEWLKV 392 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~-~~-~~~~w~~~ 392 (866)
.......+++.+++.++....+.+.+...+- ..+ .+....|++.++|..-.+......+... .. +.+.-..+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi---~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGI---ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL 221 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh
Confidence 2222367899999999998888776654331 222 4677889999998776554333333222 11 22222222
Q ss_pred HHhhhhhccCCChhHHHHHHHhcCC-CCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccC
Q 038220 393 LQSVQWQLNLNPAKCMDILKLSYQD-LPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQP 455 (866)
Q Consensus 393 l~~~~~~~~~~~~~~~~~l~~sy~~-L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~ 455 (866)
.. ......++.++..-+.. -+......+.. ..++. ..+..|+.|++...
T Consensus 222 ~~------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 222 GR------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred hc------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 11 10124566666655542 12222222211 12233 45678999998754
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=6.5e-06 Score=89.10 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=109.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCH-HHHHH---H
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRK-WEILQ---D 239 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~~---~ 239 (866)
-.+++|++..++.+..++..+. .+.+.++|+.|+||||+|+.+.+.. ....+. ..+.++++.-... ...+. .
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAREL-YGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHh-cCcccccceEEechhhhhhcchhhhhcCcc
Confidence 3578999999999999887654 4468899999999999999988731 112222 1344443321100 00000 0
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEEEecch-hh
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRIIFTTRFK-DV 311 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v 311 (866)
........ ........+.....+.... .+.+-+||+||++... ....+...+......+++|+|+... .+
T Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTD--KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhh--hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 00000000 0000001122222222221 1345589999997552 3445555554444556788777543 22
Q ss_pred hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 312 AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
..........+++.+++.++...++.+.+...+. ..+ .+....+++.++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHH
Confidence 2222223367888999999998888876644321 112 4677888889988775543
No 63
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.40 E-value=6.7e-07 Score=87.49 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=32.0
Q ss_pred CeeechhhHHHHHHHHhc-CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 167 DIVGLGEDMMILGNRVIH-GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.||||+++++++...+.. .....+.+.|+|.+|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999953 2335689999999999999999999884
No 64
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.38 E-value=4.5e-06 Score=84.54 Aligned_cols=167 Identities=16% Similarity=0.205 Sum_probs=96.7
Q ss_pred chhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC
Q 038220 171 LGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA 250 (866)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~ 250 (866)
.+..++.+.+++... ....+.|+|+.|+|||+||+.+++. ........++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH----------
Confidence 344666777765432 2568999999999999999999984 222233455655433211 00
Q ss_pred ccccCCHHHHHHHHHHHhccCcEEEEEecCCChh---hH-HHHHhhCCC-CCCCcEEEEEecchhh---------hhccC
Q 038220 251 DLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE---AW-DDLKAVFPD-AKNGSRIIFTTRFKDV---------AVYAD 316 (866)
Q Consensus 251 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~ 316 (866)
. .+...+.+ .-+||+||++... .| +.+...+.. ...+..+|+||+.... ...+.
T Consensus 82 -------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0 01111222 2389999997543 33 334433321 1233478888874321 11111
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
. ...+++.+++.++...++...+....- ..+ .+..+.+++.+.|+|..+.-+.
T Consensus 150 ~-~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 150 W-GLVFQLPPLSDEEKIAALQSRAARRGL---QLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred c-CeeEecCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 1 257899999999999988765432211 122 3566777788888887665543
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.9e-05 Score=89.43 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=114.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|..++..+.- ...+.++|..|+||||+|+.+.+.......+. +..+.....-+.|...-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL-~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL-HHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC-CeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 45799999999999999877642 34567999999999999998876321111110 00111111111111000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~ 315 (866)
... .-........+++.+.+.... .++.-++|||+++.. ..++.+...+-......++|++|++.. +..-+
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 000 000001122333333333221 245568899999866 457778777766566778888877653 22112
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch-hHHHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP-LAIVVL 375 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~i 375 (866)
......+.++.++.++..+.+.+.....+- .. -.+..+.|++.++|.. -|+..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~i---d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERI---AF---EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222367999999999999988876643221 11 2467788999998865 455543
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.6e-05 Score=86.10 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=110.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.......+. ...+.....-.++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 3578999999999988887653 235678999999999999999987421111110 00000000011111000
Q ss_pred hcC-C-CCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEEEecch-hhhhc
Q 038220 245 LGL-G-KADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRIIFTTRFK-DVAVY 314 (866)
Q Consensus 245 ~~~-~-~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~ 314 (866)
... . -........+++.+ +.+.+ .+++-++|+|+++... .++.+...+.......++|++|.+. .+...
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 000 0 00000012222222 22222 2355699999998664 5777777777666667777777543 33222
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.......+++.+++.++..+.+...+...+. .. -.+.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHH
Confidence 2222367999999999999888776544221 11 1456778999999988543
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.36 E-value=4e-06 Score=78.45 Aligned_cols=123 Identities=17% Similarity=0.108 Sum_probs=71.3
Q ss_pred eechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 038220 169 VGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLG 248 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~ 248 (866)
+|++..++.+...+.... .+.+.|+|.+|+||||+++.+++. ....-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 478888888888887643 458899999999999999999984 22222346666655443221111111000
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHh---hCCCC---CCCcEEEEEecchh
Q 038220 249 KADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKA---VFPDA---KNGSRIIFTTRFKD 310 (866)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~---~l~~~---~~gs~iivTtR~~~ 310 (866)
............++.++|+||++.. .....+.. .+... ..+..+|+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111222456789999999854 22223332 22221 35778888887543
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=1.6e-08 Score=103.45 Aligned_cols=170 Identities=23% Similarity=0.167 Sum_probs=111.7
Q ss_pred hccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec-cccccccCCccCCCCCceEEEEEeecC-CCCCccccC-
Q 038220 679 LDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR-ITYTVDLSDVQNFPPNLTELSLQFCFL-TEDPLKELE- 755 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~- 755 (866)
...+.+++++...+|.....+.+...=..+.-+-.+++..+ .++...+......+..|+.|+.++|.. +...+..|+
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 45566677776777765556665544445555666665443 233333333344578899999999854 333444554
Q ss_pred CCCCCCeeEEeccc-cCCCeEEECCCCCccccEEEeecCCCCcc--eEEccCcccccceeeEeecccCCcc-----CCCc
Q 038220 756 KLPNLRVLKLKQSS-YLGKEMVSSSGGFSQLQFLKLSNLCYLER--WRIEEGAMCNLRRLEIIECMRLKIV-----PSGL 827 (866)
Q Consensus 756 ~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~p~L~~L~l~~c~~l~~l-----p~~l 827 (866)
+.++|+.|-+..|. |++..+..-..+++.|+.+++..|..... +.....++|.|+.|+++.|...+.. ..+-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 57999999998876 44323333345889999999998765443 2333457999999999999877643 3344
Q ss_pred cCCCCCCEEEEeCCCHHHHHH
Q 038220 828 WPLTTLSNLKLGYMPFDFDLM 848 (866)
Q Consensus 828 ~~l~~L~~L~l~~~~~~~~~~ 848 (866)
..+..|+.+++.+||......
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred ccccccceeeecCCCCchHHH
Confidence 567889999999999544333
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.28 E-value=1.4e-05 Score=85.08 Aligned_cols=181 Identities=16% Similarity=0.112 Sum_probs=103.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|.++.++.|..++..+. .+.+.++|++|+||||+|+.+++.. ....|.. ++-+..+.... .+.++++++.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~-~~~vr~~i~~ 87 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRG-IDVVRNKIKM 87 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeeccccccc-HHHHHHHHHH
Confidence 3578898888888887776543 4457799999999999999998731 1122221 11111111111 1122222222
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSP 320 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~ 320 (866)
...... . .-.++.-++|+|+++... ..+.+...+......+++++++... .+.........
T Consensus 88 ~~~~~~-~---------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 88 FAQKKV-T---------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHhccc-c---------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 111100 0 001356789999998653 3445555554444556777766432 22111111226
Q ss_pred CeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhH
Q 038220 321 PYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLA 371 (866)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 371 (866)
.+++.+++.++....+...+-..+- ..+ .+....|++.++|..-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi---~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV---PYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHH
Confidence 7899999999999888877654321 112 45678888999887643
No 70
>PF14516 AAA_35: AAA-like domain
Probab=98.25 E-value=0.00019 Score=76.60 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=124.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-----YRKWEIL 237 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~ 237 (866)
.+.+..|.|....+++.+.+...+ ..+.|.|+-.+|||+|...+.+..+ +..| .++++++..- .+....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~-~~~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQ-QQGY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHH-HCCC-EEEEEEeecCCCcccCCHHHHH
Confidence 344567788877777887777643 4899999999999999999987422 2233 3567776542 2355566
Q ss_pred HHHHHHHhcC-C-CCcc------ccCCHHHHHHHHHHHh---ccCcEEEEEecCCCh--------hhHHHHHhhCCCCC-
Q 038220 238 QDLCKKVLGL-G-KADL------DKMHMEDMKEELSNFL---QERRFIIVLDDIWEK--------EAWDDLKAVFPDAK- 297 (866)
Q Consensus 238 ~~i~~~~~~~-~-~~~~------~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~--------~~~~~l~~~l~~~~- 297 (866)
+.++..+... . .... ...........+.+++ .+++.+|+||+++.. +.+..++.......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 6666555443 0 0000 0112233344455543 268999999999743 22334443322111
Q ss_pred ---CCcEEEEEecch--hhhhccCCC----CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 298 ---NGSRIIFTTRFK--DVAVYADPG----SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 298 ---~gs~iivTtR~~--~v~~~~~~~----~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
-.+-.++..... ........+ ..+++|++++.+|...|.......-. ....++|...++|+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~----------~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS----------QEQLEQLMDWTGGH 232 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC----------HHHHHHHHHHHCCC
Confidence 111112222211 111111111 15789999999999999877643211 23388999999999
Q ss_pred hhHHHHHhhhccCCCCC
Q 038220 369 PLAIVVLGGLLSSKEAT 385 (866)
Q Consensus 369 Plai~~i~~~l~~~~~~ 385 (866)
|.-+..++..+.....+
T Consensus 233 P~Lv~~~~~~l~~~~~~ 249 (331)
T PF14516_consen 233 PYLVQKACYLLVEEQIT 249 (331)
T ss_pred HHHHHHHHHHHHHccCc
Confidence 99999999999775443
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.6e-05 Score=87.25 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=108.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC-------------------CCCceEEE
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK-------------------HFDCCAWA 225 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 225 (866)
-.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3578999999999998887654 235578899999999999999986211000 01111222
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH-hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEE
Q 038220 226 YVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF-LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRI 302 (866)
Q Consensus 226 ~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 302 (866)
........+ +..++.+.+... ..+++-++|+|+++.. ..++.+...+-.....+.+
T Consensus 94 daas~~gvd---------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 94 DAASRTGVE---------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred ecccccCHH---------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 111111110 111222222211 2356779999999754 4677788777766566666
Q ss_pred EEEecc-hhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh-HHHHH
Q 038220 303 IFTTRF-KDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL-AIVVL 375 (866)
Q Consensus 303 ivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~i 375 (866)
|++|.+ ..+..-+......+++.+++.++....+.+.+...+- . .-.+....|++.++|.+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---N---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655543 3332222222378999999999988877765433221 1 114566778999998663 44444
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=3.7e-05 Score=82.53 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=107.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe--CCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV--SQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~ 242 (866)
-.+++|+++.++.+..++..+. .+.+.|+|..|+||||+|+.+.+.. ....+.. .++.+ +.... .....+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~-~~~~~~~i~ 90 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERG-IDVIRNKIK 90 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccc-hHHHHHHHH
Confidence 3568999999999999987654 3457999999999999999998741 1112211 22222 12111 111222222
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCC
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGS 319 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~ 319 (866)
.+..... .....+-++++|+++.. .....+...+......+.+|+++... .+........
T Consensus 91 ~~~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 91 EFARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 2111100 00123568999998754 34556666666555556777776432 1211111122
Q ss_pred CCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 320 PPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
..+++.+++.++....+...+...+. ..+ .+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~---~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI---EIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHH
Confidence 56899999999998888877654331 111 467788899999988653
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.2e-05 Score=90.61 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=110.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...-....... .+.. +... ..+....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~-C~sC---~~i~~g~ 86 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGV-CSSC---VEIAQGR 86 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCC-chHH---HHHhcCC
Confidence 3579999999999998887654 13455899999999999999999742111110000 0000 0000 0000000
Q ss_pred hc--CCCCccccCCHHHHHHHHHH----HhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 245 LG--LGKADLDKMHMEDMKEELSN----FLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 245 ~~--~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
.. ..-........+++.+.+.. -..+++-++|||+++.. ..++.++..+-......++|++|.+. .+..-+
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 00 00000001122222221111 12367789999999865 56777777776656667777766543 332221
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
......+++++++.++....+.+.+-..+. . .-.+....|++.++|.|--+.
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~---~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQL---P---FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCC---C---CCHHHHHHHHHHcCCCHHHHH
Confidence 122378999999999999888776543211 1 124677889999999885443
No 74
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=2.9e-06 Score=85.51 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=60.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhcCCCCc--cccC-CHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE--YRKWEILQDLCKKVLGLGKAD--LDKM-HMEDMKEEL 264 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~l 264 (866)
..++|+|++|+|||||++.++++.... +|+..+|+.+..+ ++..++++.+...+....... .... -........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 488999999999999999999974434 8999999997776 788888888843332221111 0000 011122222
Q ss_pred HHH-hccCcEEEEEecCCC
Q 038220 265 SNF-LQERRFIIVLDDIWE 282 (866)
Q Consensus 265 ~~~-L~~k~~LlVlDdv~~ 282 (866)
..+ -++++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 247899999999953
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=4.7e-05 Score=84.68 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=113.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++...-...... -.+..+....+ -..+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcC
Confidence 3578999998888887776653 2357889999999999999999874211110000 00000111100 0001000
Q ss_pred HhcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhhhc
Q 038220 244 VLGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVAVY 314 (866)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 314 (866)
.... .-........+++.+.+... +.+++-++|+|+++.. ..++.+...+......+.+|++| +...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 00000112333443333222 2356778999999865 56888887777666666666544 44444433
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.......+++.+++.++..+.+.+.+...+. .. -.+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENL---KT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHH
Confidence 3333367899999999999999887754331 11 1456677999999987443
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4.4e-05 Score=85.52 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=112.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+...+.|..++..+.- ...+.++|+.|+||||+|+.+.+...... ++.. ..+.....-+.+...-
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl-~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL-HHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCC
Confidence 45799999999999999887642 35778999999999999999887311111 1100 0000000001110000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~ 315 (866)
... .-........+++.+.+... ..++.-++|+|+++.. ...+.+...+.....+.++|++|.+.. +..-.
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 00000112233333322211 1356678999999865 466777777766556677888776532 21111
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
......+++++++.++..+.+.+.+...+- . .-.+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQI---A---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCC---C---CCHHHHHHHHHHcCCCHHHHH
Confidence 122378999999999999888776644321 1 114567789999999775443
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=3.1e-05 Score=86.57 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=114.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.......+...+|.|.+.. .+....-..+
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~----~i~~~~h~dv 87 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL----AVRRGAHPDV 87 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH----HHhcCCCCce
Confidence 3578999998888888887764 2345699999999999999999874221122222333332111 0000000000
Q ss_pred hcCCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chhhhhccC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKDVAVYAD 316 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~~ 316 (866)
.... .......+.+.+ +.+.+ .+++-++|+|+++.. ..++.+...+........+|++|. ...+...+.
T Consensus 88 ~el~--~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 88 LEID--AASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred EEec--ccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000 001112233222 22222 246679999999855 457778877766555555555554 334433333
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.....+++.+++.++..+.+.+.+...+-. . -.+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~---i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE---A---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCC---C---CHHHHHHHHHHcCCCHHHH
Confidence 334689999999999999998876543311 1 1467788999999988544
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=7.5e-05 Score=82.80 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=108.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+.....+...+..+. -...+.++|++|+||||+|+.+++......... + ..+.....-..+...-
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~----~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---V----EPCNECRACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CCCcccHHHHHHhcCC
Confidence 3579999888888877776654 235678999999999999999987311110000 0 0000000000000000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhhc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAVY 314 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 314 (866)
... .-........+++. .+.+.. .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+...
T Consensus 85 ~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 85 FMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPT 163 (472)
T ss_pred CCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHH
Confidence 000 00000011222222 222222 245679999999754 3456666666554444555544433 344333
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-chhHHHHHhhhc
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG-LPLAIVVLGGLL 379 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~i~~~l 379 (866)
.......+++.+++.++....+.+.+...+- ..+ ++....|++.++| .+.|+..+-.+.
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGI---EID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333468899999999998888887644221 111 4567778887754 466766665433
No 79
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=1.9e-06 Score=100.04 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=81.5
Q ss_pred eeEEEEecCCccc-cCcccccCCCCceEEEeeCCCCc-cccccccCCCCccEEecCCCccc-cccccccccccccEEecc
Q 038220 567 LLQVLDLEGVYMA-LIDSSIGNLIHLRYLDLRKTWLK-MLPSSMGNLFNLQSLDLSSTLVD-PIPLVIWKMQQLKHVYFS 643 (866)
Q Consensus 567 ~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~ 643 (866)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888875 77888888899999999988886 78888888999999999888554 678888889999999998
Q ss_pred CccccccCCCCCCCC-CCCceecceee
Q 038220 644 EFREMVVNPPADASL-PNLQTLLGICI 669 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l-~~L~~L~~~~~ 669 (866)
+|...+.+|..++.+ .++..+++.++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 888777788776553 34555555544
No 80
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.1e-05 Score=85.60 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=110.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++...- .+... ...+....+-..+.......+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHHHHHHccCCccc
Confidence 4578999999998888887765 1246789999999999999999874111 11100 001111111111111100000
Q ss_pred hcCCCCccccCCHHHHHH---HHHHH-hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chhhhhccCC
Q 038220 245 LGLGKADLDKMHMEDMKE---ELSNF-LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKDVAVYADP 317 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~---~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~~~ 317 (866)
... . .......+++.+ .+... ..++.-++|+|+++.. ..++.+...+-.......+|.+|. ...+..-+..
T Consensus 93 iEI-d-aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 93 LEI-D-AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred eee-c-hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 000 0 001112233322 22211 2356679999999865 467777777765444555555554 3444322223
Q ss_pred CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 318 GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
....+.+.+++.++..+.+.+.+...+- . .-.+....|++.++|.+-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi---~---~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV---Q---YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC---C---CCHHHHHHHHHHcCChHH
Confidence 3367999999999988888776643221 1 124677889999999884
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.1e-05 Score=81.57 Aligned_cols=201 Identities=12% Similarity=0.144 Sum_probs=114.6
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC--CCCceEEEEeCCCCCHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK--HFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
.....++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+.+...-.. .+... .....+......+.+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 345679999999999999988764 234688999999999999998886311100 01111 001111111122222
Q ss_pred HHHHhcC------C-CCc----cccCCHHHHHHHHHHHhc-----cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEE
Q 038220 241 CKKVLGL------G-KAD----LDKMHMEDMKEELSNFLQ-----ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRI 302 (866)
Q Consensus 241 ~~~~~~~------~-~~~----~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 302 (866)
...-... . ... ......+++. .+.+++. +++-++|+|+++.. ...+.+...+........+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 1110000 0 000 0112344443 4444443 46779999999865 3455666666544445555
Q ss_pred EEEe-cchhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 303 IFTT-RFKDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 303 ivTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
|++| +...+..-.......+++.+++.++..+++.+.... . . .-.+....+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~----~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q----G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c----C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 433332222223378999999999999999874311 1 1 113456789999999998655443
No 82
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.4e-06 Score=85.55 Aligned_cols=204 Identities=18% Similarity=0.087 Sum_probs=101.4
Q ss_pred cCCCeeEEEEecCCccc---cCcccccCCCCceEEEeeCCCCc----cccccccCCCCccEEecCCC--ccccccccccc
Q 038220 563 EEYKLLQVLDLEGVYMA---LIDSSIGNLIHLRYLDLRKTWLK----MLPSSMGNLFNLQSLDLSST--LVDPIPLVIWK 633 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~i~----~lp~~i~~l~~L~~L~l~~~--~~~~lp~~i~~ 633 (866)
..+..++.|||.+|.+. ++-.-+.+|++|+.|+|+.|.+. .+| --+.+|++|-|.++ ........+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 44455566666665542 23333445566666666655533 233 12345555555555 33344444445
Q ss_pred cccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcE
Q 038220 634 MQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQC 713 (866)
Q Consensus 634 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~ 713 (866)
+++++.|+++.|..- .+.+-. ..... --+.+++|+...|........+..-..++++.+
T Consensus 145 lP~vtelHmS~N~~r--------------q~n~Dd----~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLR--------------QLNLDD----NCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred chhhhhhhhccchhh--------------hhcccc----ccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 555555555443211 111000 00100 012455555555654444444444445677777
Q ss_pred EEeeeccccccccCCccCCCCCceEEEEEeecCC-CCCccccCCCCCCCeeEEeccccCC-----CeEEECCCCCccccE
Q 038220 714 LKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLT-EDPLKELEKLPNLRVLKLKQSSYLG-----KEMVSSSGGFSQLQF 787 (866)
Q Consensus 714 L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~~~~~~-----~~~~~~~~~~~~L~~ 787 (866)
+.+..+.+-...-......+|.+.-|+|+.+.+. .+..+.|..+|+|..|.++++.+.+ +....-++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 7776543211111111122345556778777663 3456678889999999998776542 111223467788887
Q ss_pred EEe
Q 038220 788 LKL 790 (866)
Q Consensus 788 L~l 790 (866)
|+=
T Consensus 284 LNG 286 (418)
T KOG2982|consen 284 LNG 286 (418)
T ss_pred ecC
Confidence 753
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.3e-06 Score=65.97 Aligned_cols=56 Identities=34% Similarity=0.467 Sum_probs=26.5
Q ss_pred CceEEEeeCCCCccccc-cccCCCCccEEecCCCccccccc-cccccccccEEeccCc
Q 038220 590 HLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEF 645 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 645 (866)
+|++|++++|.++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555544444442 34445555555555444444432 3445555555555444
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.3e-06 Score=65.95 Aligned_cols=59 Identities=37% Similarity=0.454 Sum_probs=51.3
Q ss_pred CeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcc
Q 038220 566 KLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLV 624 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~ 624 (866)
++|++|++++|.+..+|. .+.++++|++|++++|.++.+|+ .+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999988885 67889999999999999998874 789999999999998853
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.14 E-value=2.7e-06 Score=89.11 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=63.0
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC--CHHHHHHHHHHHHhcCCCCccc-
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY--RKWEILQDLCKKVLGLGKADLD- 253 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~~~~~~~~~~~- 253 (866)
++++.+..-. .-....|+|++|+||||||+.+|++.... +|+..+||.+..+. ...++++.+...+......+..
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4555555422 12467899999999999999999964433 89999999999886 5556666665222111111000
Q ss_pred -cCC-HHHHHHHHHHH-hccCcEEEEEecCCC
Q 038220 254 -KMH-MEDMKEELSNF-LQERRFIIVLDDIWE 282 (866)
Q Consensus 254 -~~~-~~~~~~~l~~~-L~~k~~LlVlDdv~~ 282 (866)
... .....+.-..+ -.+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 000 01111111111 257999999999953
No 86
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.14 E-value=3.6e-05 Score=77.86 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=96.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
.+.-+.+||++|+||||||+.+....+... ..+|..|..-....-.++|+++.... ..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~------------------~~ 218 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE------------------KS 218 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH------------------Hh
Confidence 467788999999999999999998532222 56777776544444445554443221 12
Q ss_pred hccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEE--Eecchhhh--hccCCCCCCeeccCCChHHHHHHHHHHHh--
Q 038220 268 LQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIF--TTRFKDVA--VYADPGSPPYELCLLNEEDSCELLFKKAF-- 341 (866)
Q Consensus 268 L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~-- 341 (866)
+..+|.+|.+|.|..-.. .+---+||.-.+|.-++| ||.+...- ...-....++.|+.|+.++-..++.+..-
T Consensus 219 l~krkTilFiDEiHRFNk-sQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNK-SQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred hhcceeEEEeHHhhhhhh-hhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 346889999999953211 111235676777887777 55554321 11112237899999999999998887432
Q ss_pred -CCCCCCCCCCh----hHHHHHHHHHHHcCCchh
Q 038220 342 -AGGNAMSSLPP----WSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 342 -~~~~~~~~~~~----~~~~~~~~i~~~~~g~Pl 370 (866)
.+..+....+. ....+..-++..|.|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 12111111221 223466677777877653
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.13 E-value=3e-05 Score=90.14 Aligned_cols=174 Identities=21% Similarity=0.233 Sum_probs=95.7
Q ss_pred CCCeeechhhHH---HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 165 EEDIVGLGEDMM---ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 165 ~~~~vGr~~~~~---~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
-.+++|.+..+. .+.+.+..+. ...+.++|++|+||||+|+.+++. ...+|. .++...... .+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~~i---~d-- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLAGV---KD-- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhhhh---HH--
Confidence 356889888764 4555555443 556789999999999999999983 334431 111110000 00
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHh--ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEE--ecchh--hhh
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFL--QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFT--TRFKD--VAV 313 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT--tR~~~--v~~ 313 (866)
..+........+ .+++.++|+||++.. ..++.+...+. .|+.++|+ |.+.. +..
T Consensus 93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 011111121111 246779999999754 44555655443 35555553 33321 211
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCC-CCCChhHHHHHHHHHHHcCCchh
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAM-SSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
........+.+++++.++...++.+..-...... .....--.+....|++.+.|..-
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1111236799999999999999987654100000 00011124566778888887653
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.3e-05 Score=84.11 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=112.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC--CCceEEEEeCCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH--FDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+...-... -.... +..+.....-+.|..
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHc
Confidence 4579999999999999988764 2346688999999999999998863111000 00000 000000000011100
Q ss_pred HHhcC--CCCccccCCHHHHHHHHHHHh----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhh
Q 038220 243 KVLGL--GKADLDKMHMEDMKEELSNFL----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAV 313 (866)
Q Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 313 (866)
.-... .-........+++.+.+.... .++.-++|+|+++.. ..++.+...+-......++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00000 000001123344444333321 356679999999865 4677777777655556666666554 33332
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
-+......+.+..++.++..+.+.+.+...+. .. -.+..+.|++.++|.|.....+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22222377899999999999888776543221 11 1355678999999999644433
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=0.00011 Score=80.25 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=109.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc--------------------CCCCceEE
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK--------------------KHFDCCAW 224 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~w 224 (866)
-.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.....-. .+++. ++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 3578999999999999887654 23577899999999999998887531100 12221 12
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEE
Q 038220 225 AYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRI 302 (866)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~i 302 (866)
+.-..... .+-++++...+... -..+++-++|+|+++.. ...+.+...+......+.+
T Consensus 91 ~~~~~~~~-~~~~~~l~~~~~~~-------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 91 IDAASNNG-VDDIREILDNVKYA-------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred eeccccCC-HHHHHHHHHHHhcC-------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 21111101 01111222211110 01245568999998654 4567777777655556777
Q ss_pred EEEecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 303 IFTTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 303 ivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
|++|.+.. +..........+++.+++.++..+++...+-..+. ..+ .+.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 77765443 22222222367888999999998888876644321 111 467788999999988655443
No 90
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.12 E-value=6.9e-05 Score=86.39 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=104.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC---CceEEEEeCCC---CCHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF---DCCAWAYVSQE---YRKWEILQD 239 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~~ 239 (866)
++++|++..+..+.+.+.... ...+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999998888775433 4579999999999999999998753322222 12345544321 122221111
Q ss_pred H---------------HHHHhcC----------CC-----CccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHH
Q 038220 240 L---------------CKKVLGL----------GK-----ADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWD 287 (866)
Q Consensus 240 i---------------~~~~~~~----------~~-----~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~ 287 (866)
+ ++..+.. +. .+....+ ...+..+.+.+.++++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 1110100 00 0122222 34567788888889998887777654 4688
Q ss_pred HHHhhCCCCCCCcEEEE--Eecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 288 DLKAVFPDAKNGSRIIF--TTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 288 ~l~~~l~~~~~gs~iiv--TtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
.++..+....+...+++ ||++.. +..........+.+.+++.++.+.++.+.+..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 88777766655555555 455432 11111122246788999999999999887643
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=7.6e-05 Score=80.72 Aligned_cols=190 Identities=13% Similarity=0.063 Sum_probs=106.6
Q ss_pred CCeeechhhHHHHHHHHhcCCC--------ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGL--------RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
.+++|.+.-++.+...+..+.. -...+.++|+.|+||||+|+.+.+...-... . +..+....+ ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C~~-C~-- 77 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGECRA-CR-- 77 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCCHH-HH--
Confidence 4688999999999988876531 2456889999999999999988752100000 0 000111000 00
Q ss_pred HHHHHHHhcC---CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec
Q 038220 238 QDLCKKVLGL---GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR 307 (866)
Q Consensus 238 ~~i~~~~~~~---~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR 307 (866)
.+...-... -.++......+++.+.+ +.+ .+++-++|+|+++.. ...+.+...+-....+..+|++|.
T Consensus 78 -~~~~~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 78 -TVLAGTHPDVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred -HHhcCCCCCEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 000000000 00000112233333222 222 245568889999865 345666666665555666776665
Q ss_pred ch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 308 FK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 308 ~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
+. .+..-+......+.+.+++.++..+.+..... .+ .+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--------~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--------VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 53 33322222237899999999999888864321 11 355778999999999755443
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=9.3e-05 Score=72.29 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=62.7
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCC
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNA 346 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 346 (866)
+.+-++|+||++.. ...+.+...+......+.+|++|++. .+..........+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 45678999999764 45777887877656667777777644 222222223368999999999998888776 1 1
Q ss_pred CCCCChhHHHHHHHHHHHcCCchh
Q 038220 347 MSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
. ++.+..|++.++|.|.
T Consensus 170 ----~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ----S---EEAAELLLALAGGSPG 186 (188)
T ss_pred ----C---HHHHHHHHHHcCCCcc
Confidence 1 3678899999999885
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.08 E-value=3.8e-07 Score=101.16 Aligned_cols=237 Identities=25% Similarity=0.185 Sum_probs=106.4
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCcccc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 648 (866)
..+.+..+.+...-..++.+..|.+|++.+|.|..+...+..+.+|++|++++|.+..+. .+..++.|+.|++.+|...
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcch
Confidence 333344444433333345555555555555555555443455555555555555555543 3445555555555555443
Q ss_pred ccCCCCCCCCCCCceecceeecCCcchhHh-hccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc-ccc
Q 038220 649 VVNPPADASLPNLQTLLGICICETSCVEQG-LDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT-VDL 726 (866)
Q Consensus 649 ~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~-~~l 726 (866)
.+ .++..+++|+.+++.++... .+... +..+.+|+.+.+.++.....+. +..+..+..+++..|.+.. ..+
T Consensus 154 -~~-~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 154 -DI-SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEG----LDLLKKLVLLSLLDNKISKLEGL 226 (414)
T ss_pred -hc-cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccc----hHHHHHHHHhhcccccceeccCc
Confidence 11 23333555555555444221 11110 3445566666666554321111 1111122222333322110 011
Q ss_pred CCccCCCC--CceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcce---EE
Q 038220 727 SDVQNFPP--NLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERW---RI 801 (866)
Q Consensus 727 ~~~~~~~~--~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~ 801 (866)
+ .+. +|+.+++.++.+.... ..+..++++..|++..+.+.. .......+.+..+....++....+ ..
T Consensus 227 ~----~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 227 N----ELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred c----cchhHHHHHHhcccCcccccc-ccccccccccccchhhccccc---cccccccchHHHhccCcchhcchhhhhcc
Confidence 1 111 3667777777654321 345566677777776555432 112234444555555544433211 11
Q ss_pred -ccCcccccceeeEeecccCC
Q 038220 802 -EEGAMCNLRRLEIIECMRLK 821 (866)
Q Consensus 802 -~~~~~p~L~~L~l~~c~~l~ 821 (866)
.....+.++.+.+.+++.-.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccCcccc
Confidence 13455666666666665433
No 94
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=0.00027 Score=70.72 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=83.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
.+.+.|+|..|+|||+|++.++... ...+++.. ....+++ . .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~--------------------~----~~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAA--------------------N----AA 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHH--------------------H----hh
Confidence 3578999999999999999988742 12233221 1111111 0 11
Q ss_pred ccCcEEEEEecCCChh-hHHHHHhhCC-CCCCCcEEEEEecch---------hhhhccCCCCCCeeccCCChHHHHHHHH
Q 038220 269 QERRFIIVLDDIWEKE-AWDDLKAVFP-DAKNGSRIIFTTRFK---------DVAVYADPGSPPYELCLLNEEDSCELLF 337 (866)
Q Consensus 269 ~~k~~LlVlDdv~~~~-~~~~l~~~l~-~~~~gs~iivTtR~~---------~v~~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (866)
.+ -+|++||+.... .-+.+...+. -...|..+|+|++.. +....+... .++++++++.++-.+++.
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHHHHH
Confidence 11 278889996431 1122222222 112356788888632 222233322 789999999999999999
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 338 KKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
+.+....- ..+ +++..-|++.+.|..-++..
T Consensus 164 ~~~~~~~~---~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQL---YVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCC---CCC---HHHHHHHHHHhhhhHHHHHH
Confidence 88754321 222 56777888888887766654
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00016 Score=77.61 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=112.6
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCce------EEEEeCCCCCHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC------AWAYVSQEYRKWEIL 237 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~------~wv~v~~~~~~~~~~ 237 (866)
...+++|.++..+.+.+.+..+. -...+.++|+.|+||+|+|..+.+..--....... .-..+...... -
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~---c 92 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV---A 92 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH---H
Confidence 34689999999999999888764 23468899999999999998777531101100000 00000001111 1
Q ss_pred HHHHHHHhcC----C----CCc---cccCCHHHHHHHHHHHhc-----cCcEEEEEecCCCh--hhHHHHHhhCCCCCCC
Q 038220 238 QDLCKKVLGL----G----KAD---LDKMHMEDMKEELSNFLQ-----ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNG 299 (866)
Q Consensus 238 ~~i~~~~~~~----~----~~~---~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g 299 (866)
+.+...-... . ... ......+++. .+.+++. +.+-++|+||++.. .....+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 0 000 0112344433 3334443 45679999999755 4566677666655556
Q ss_pred cEEEEEecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 300 SRIIFTTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 300 s~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
+.+|++|.+.. +..........+.+.+++.++..+++...... .+ .+....++..++|.|..+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-------~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-------LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-------CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 66777776553 32222333478999999999999999775321 11 1222678999999998665543
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.07 E-value=4.5e-05 Score=82.90 Aligned_cols=176 Identities=24% Similarity=0.169 Sum_probs=98.6
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY 231 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 231 (866)
....++.|+++.++++.+.+... -...+-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch--
Confidence 34567899999999998877431 012456899999999999999999984 33332 22211
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh-------------h---hHHHHHhhCC
Q 038220 232 RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK-------------E---AWDDLKAVFP 294 (866)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~ 294 (866)
..+ .....+. .......+.+.. ...+.+|++||++.. . .+..+...+.
T Consensus 190 --~~l----~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 190 --SEL----VRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred --HHH----HHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 111 1111110 011122222222 246789999998642 1 1222322222
Q ss_pred --CCCCCcEEEEEecchhhh-hcc-C--CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 295 --DAKNGSRIIFTTRFKDVA-VYA-D--PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 295 --~~~~gs~iivTtR~~~v~-~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
....+..||.||...... ... . .....+.+...+.++..++|..+....... ..-. ...+++.+.|.
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~---~~~~----~~~la~~t~g~ 327 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA---EDVD----LEAIAKMTEGA 327 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC---ccCC----HHHHHHHcCCC
Confidence 123466788888654321 111 1 112568899999999999998877543311 1111 34566777665
Q ss_pred h
Q 038220 369 P 369 (866)
Q Consensus 369 P 369 (866)
.
T Consensus 328 s 328 (364)
T TIGR01242 328 S 328 (364)
T ss_pred C
Confidence 3
No 97
>PRK08727 hypothetical protein; Validated
Probab=98.07 E-value=0.00011 Score=74.32 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=85.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.|+|..|+|||+|++.+++. .......+.|+++.+. ...+ ...+. .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~------~~~~--------------------~~~~~-~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAA------AGRL--------------------RDALE-AL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHh------hhhH--------------------HHHHH-HH-
Confidence 46999999999999999999874 3333334566654221 1100 01111 11
Q ss_pred cCcEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecchh---------hhhccCCCCCCeeccCCChHHHHHH
Q 038220 270 ERRFIIVLDDIWEK---EAWDD-LKAVFPD-AKNGSRIIFTTRFKD---------VAVYADPGSPPYELCLLNEEDSCEL 335 (866)
Q Consensus 270 ~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~l~~L~~~~~~~L 335 (866)
.+.-+||+||+... ..|.. +...+.. ...|..+|+|++... ....+... ..+++++++.++-.++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARAAV 170 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHHHH
Confidence 23458999999743 23332 2222221 123566999997432 11222122 5789999999999999
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 336 LFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 336 f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
+.+++....- ..+ .+....|++.+.|-.-.+
T Consensus 171 L~~~a~~~~l---~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 171 LRERAQRRGL---ALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHcCC---CCC---HHHHHHHHHhCCCCHHHH
Confidence 9987754321 122 466677888887665444
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00012 Score=80.88 Aligned_cols=176 Identities=20% Similarity=0.207 Sum_probs=109.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCc------cc--------------cCCCCceEE
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSS------DV--------------KKHFDCCAW 224 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------~~--------------~~~f~~~~w 224 (866)
-.++||.+...+.+...+..+. -...+.++|+.|+||||+|+.+.+-. .. ..|.+ ++.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~e 89 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VIE 89 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EEE
Confidence 4578999988888887777654 23478899999999999999887510 00 00111 222
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCC
Q 038220 225 AYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKN 298 (866)
Q Consensus 225 v~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~ 298 (866)
++.+... ..+++.+.+... +.++.-++|+|+++.. +..+.+...+.....
T Consensus 90 idaas~~------------------------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 90 IDAASNT------------------------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EecccCC------------------------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 2222211 222322222111 1246668999999754 457778777776666
Q ss_pred CcEEEEEecc-hhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 299 GSRIIFTTRF-KDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 299 gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.+++|++|.. ..+...+......+++.+++.++..+.+.+.+...+. .. -.+....|++.++|.+-.+
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHH
Confidence 7777776643 3333322233377899999999999988887654331 11 1456778999999887543
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.5e-05 Score=82.37 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=110.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEE-eCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAY-VSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|.+..++.|..++..+. -...+.++|+.|+||||+|..+.+...-...+....|.. +...+.....-+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4578999988888888887664 234578899999999999999886321111110000110 00000000000000000
Q ss_pred HhcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 038220 244 VLGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVAV 313 (866)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~ 313 (866)
.... .-........+++.+. .+.+ .+++-++|+|+++.. ..++.+...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 0000 0000011123344332 2223 245668999999765 46788888877666667766655 3333332
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
........+++.+++.++..+.+...+-..+. .. -.+.+..|++.++|.+--+.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i---~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SV---DADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHH
Confidence 22222257889999999988888776533221 11 15678889999999875443
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=7.1e-05 Score=83.86 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+... |.-|.... .+.....-+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHHcCC
Confidence 4578999999999999887654 235788999999999999999886311 11121110 111111111111100
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~~ 315 (866)
... .-........+++...+... ..+++-++|+|+++.. ..++.+...+......+.+|++| ....+....
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 000 00000112223332222111 1134457999999764 46777777776555556666555 333332222
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh-HHHHHhh
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL-AIVVLGG 377 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~i~~ 377 (866)
......+++.+++.++....+...+...+. ..+ .+.+..+++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222368899999999998888776543221 112 4567789999999664 4444433
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00011 Score=83.14 Aligned_cols=195 Identities=14% Similarity=0.138 Sum_probs=108.9
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-.... -+..+... ..-+.+...-
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~~g~ 86 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQIDAGR 86 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHhccC
Confidence 4579999999999999988754 23568899999999999999887631111100 00000000 0000000000
Q ss_pred hc--CCCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEEEecchh-hhhcc
Q 038220 245 LG--LGKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYA 315 (866)
Q Consensus 245 ~~--~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~ 315 (866)
.. ..-........+.+.+.+... ..+++-++|+|+++... ..+.+...+......+++|++|.+.. +..-+
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 00 000000112223333332211 12566789999997653 45566666655445566777765432 22111
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
......+.+.+++.++....+.+.+-..+- . .-.+....|++.++|.+--+.
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~---id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEKI---A---YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---C---cCHHHHHHHHHHhCCCHHHHH
Confidence 112256788899999999888876654321 1 124567889999999885443
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00013 Score=83.08 Aligned_cols=191 Identities=16% Similarity=0.199 Sum_probs=110.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+...-...+. ...+.... ....+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~----~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECD----NCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCH----HHHHH
Confidence 4579999999999988887764 234568999999999999999987411111000 00010111 11111
Q ss_pred hcCCCCc------cccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hh
Q 038220 245 LGLGKAD------LDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DV 311 (866)
Q Consensus 245 ~~~~~~~------~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v 311 (866)
.....++ ......+++.+.+... ..+++-++|+|+++.. ...+.+...+-......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 1100000 0012233333322221 2356779999999865 46777777766655566666666543 33
Q ss_pred hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 312 AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
..-+......+.+++++.++....+.+..-..+. .. -.+....|++.++|.+-.+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~---e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PF---EPRALQLLARAADGSMRDAL 218 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHH
Confidence 2211222378999999999999888776533221 11 14566789999999876443
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.02 E-value=0.00011 Score=74.32 Aligned_cols=170 Identities=17% Similarity=0.256 Sum_probs=94.7
Q ss_pred CCeeechh-hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 166 EDIVGLGE-DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 166 ~~~vGr~~-~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
..++|... ....+.++..... .+.+.|+|+.|+|||+|++.+++. ....-..+.++.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~--~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEH--SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh------------
Confidence 34446322 3333444433322 357899999999999999999873 222223456665532100
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhHHHHH-hhCCC-CCCC-cEEEEEecchh--------
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAWDDLK-AVFPD-AKNG-SRIIFTTRFKD-------- 310 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iivTtR~~~-------- 310 (866)
...+..+.+ . +--++++||++.. ..|+... ..+.. ...| .++|+||+...
T Consensus 87 -----------~~~~~~~~~----~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 87 -----------FVPEVLEGM----E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -----------hhHHHHHHh----h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 001111111 1 1247899999753 3444322 22221 1123 46899987542
Q ss_pred -hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 311 -VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 311 -v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
....+... .++++.+++.++-.+++.+++...+- ..+ +++..-|++.+.|..-++..
T Consensus 151 ~L~SRl~~g-~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~---~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 151 DLASRLDWG-QIYKLQPLSDEEKLQALQLRARLRGF---ELP---EDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHhCC-ceeeecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhhcCCHHHHHH
Confidence 22223222 68999999999999998876644221 122 56777788888776654443
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00017 Score=78.67 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=104.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccc------cCCCCceE-EEEeCCCCCHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDV------KKHFDCCA-WAYVSQEYRKWEIL 237 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~f~~~~-wv~v~~~~~~~~~~ 237 (866)
-.+++|.+...+.+...+..+. -...+.++|+.|+||||+|+.+.+...- ...|...+ -+....... .+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~i 93 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS-VDDI 93 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC-HHHH
Confidence 3578999999999999987753 2468889999999999999998763111 01122111 111000000 0111
Q ss_pred HHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chhhhhc
Q 038220 238 QDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKDVAVY 314 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~ 314 (866)
.++++++... -..+++-++|+|+++.. ..++.+...+......+.+|++|. ...+...
T Consensus 94 ~~l~~~~~~~-------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 94 RNLIDQVRIP-------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHhhc-------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111111110 01235568999998754 346777666655444555665553 3233222
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
.......++..+++.++....+...+...+- ..+ .+.+..+++.++|.+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI---KFE---DDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhCCCCHH
Confidence 2222357899999999998888876654331 112 4677888888998665
No 105
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00018 Score=81.80 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=110.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF--DCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
-.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+...-.... ...-.-.+.. ...-+.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~----C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV----CQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc----cHHHHHHHc
Confidence 3578998888888888887764 23567899999999999999986521100000 0000000111 011111100
Q ss_pred HHhcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhh
Q 038220 243 KVLGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAV 313 (866)
Q Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~ 313 (866)
.-... .-........+++.+.+... ..++.-++|||+++.. ..++.+...+.......++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 00000112333443333221 1244568999999865 4677788777765666667666543 33322
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
-.......+++++++.++..+.+.+.+...+- .. -.+....|++.++|.+--+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 12222378999999999998888876644321 11 145678889999997754433
No 106
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.00 E-value=0.00026 Score=71.80 Aligned_cols=194 Identities=13% Similarity=0.089 Sum_probs=115.0
Q ss_pred hhHHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 038220 173 EDMMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQDLCKKVLGL 247 (866)
Q Consensus 173 ~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 247 (866)
+.++++.+++..+ ....+-+.|||.+|+|||++++++........ .--.++.|.+...++...+...|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3455666666654 33567899999999999999999986421111 111477888889999999999999999885
Q ss_pred CCCccccCCHHHHHHHHHHHhcc-CcEEEEEecCCCh-----h---hHHHHHhhCCCCCCCcEEEEEecchhhhhcc---
Q 038220 248 GKADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIWEK-----E---AWDDLKAVFPDAKNGSRIIFTTRFKDVAVYA--- 315 (866)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~-----~---~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--- 315 (866)
..+ ..........+...++. +.-+||+|++++. . ..-.....+.+.-.-+-|.+-|+.-.-+-..
T Consensus 124 ~~~---~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 124 YRP---RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cCC---CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 222 12334444444455543 5668999999763 1 1112223344444456667766543322111
Q ss_pred -CCCCCCeeccCCChH-HHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 316 -DPGSPPYELCLLNEE-DSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 316 -~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
.....++.+.....+ +...|+..-...-+-. ...+-...+++..|...++|+.=
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr-~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLR-KPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCC-CCCCCCCHHHHHHHHHHcCCchH
Confidence 111266777777754 4555553322111100 11112336789999999999763
No 107
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=4.5e-06 Score=96.95 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=83.6
Q ss_pred CCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEE
Q 038220 710 GLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLK 789 (866)
Q Consensus 710 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 789 (866)
.+..|+|.++.+ ...+|..+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+ .++..++.+++|+.|+
T Consensus 419 ~v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEE
Confidence 366777777654 34566667778888888888888877777778888888888888888876 6667778888888888
Q ss_pred eecCCCCcceEEccCc-ccccceeeEeecccCCccC
Q 038220 790 LSNLCYLERWRIEEGA-MCNLRRLEIIECMRLKIVP 824 (866)
Q Consensus 790 l~~~~~l~~~~~~~~~-~p~L~~L~l~~c~~l~~lp 824 (866)
|++|.....+|...+. +.++..+++.+|+.+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8888766666655443 3466778888887666544
No 108
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=2.4e-05 Score=81.50 Aligned_cols=270 Identities=20% Similarity=0.146 Sum_probs=165.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
.+.+.++|.|||||||++-.+.. +..-|. .+.++....-.+...+.-.+...+..... +-+.....+...
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~------~g~~~~~~~~~~ 84 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ------PGDSAVDTLVRR 84 (414)
T ss_pred hheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc------cchHHHHHHHHH
Confidence 57999999999999999998887 455665 45566665555555544444443444311 123344456667
Q ss_pred hccCcEEEEEecCCChh-hHHHHHhhCCCCCCCcEEEEEecchhhhhccCCCCCCeeccCCChH-HHHHHHHHHHhCCCC
Q 038220 268 LQERRFIIVLDDIWEKE-AWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPGSPPYELCLLNEE-DSCELLFKKAFAGGN 345 (866)
Q Consensus 268 L~~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~ 345 (866)
..+++.++|+||-.... .-..+.-.+-.+...-.|+.|+|...... + ...+.+..|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---g-e~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---G-EVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---c-cccccCCccccCCchhHHHHHHHHHhcc
Confidence 77899999999985432 11222223333444556888888554322 2 256777778764 788998877654432
Q ss_pred CCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhhhc---cC---C-ChhHHHHHHHhcCCC
Q 038220 346 AMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQWQL---NL---N-PAKCMDILKLSYQDL 418 (866)
Q Consensus 346 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~~~---~~---~-~~~~~~~l~~sy~~L 418 (866)
+ ......-.....+|.+...|.|++|...+...+.-. ..+-...++.--..+ .. . .....+.+.+||.-|
T Consensus 161 ~-f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~--~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 161 S-FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS--PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred c-eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC--HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh
Confidence 2 112233356788999999999999999998876543 222222222111111 11 1 156678899999999
Q ss_pred CCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 419 PYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 419 ~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
....+--|.-++.|...+... ...|.+-|=.. ....-....-+-.+++.+++...+
T Consensus 238 tgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~ 293 (414)
T COG3903 238 TGWERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALD 293 (414)
T ss_pred hhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhh
Confidence 999999999999998776654 23343433110 011223444456667777765544
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00017 Score=79.95 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=97.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHF--DCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (866)
..-+.|+|..|+|||+|++.+.+. +.... ..+++++ ..+++..+...+... ....+.+++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~----------~~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKT----------HKEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHh----------hhHHHHHHH
Confidence 456899999999999999999883 22211 2244443 345556665554331 011223344
Q ss_pred HhccCcEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEecchh---------hhhccCCCCCCeeccCCChHHH
Q 038220 267 FLQERRFIIVLDDIWEK---EAW-DDLKAVFPD-AKNGSRIIFTTRFKD---------VAVYADPGSPPYELCLLNEEDS 332 (866)
Q Consensus 267 ~L~~k~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~l~~L~~~~~ 332 (866)
.+. ..-+||+||+... ..+ +.+...+.. ...|..||+|+.... +...+..+ .+..+++++.++-
T Consensus 203 ~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~r 280 (450)
T PRK14087 203 EIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKTA 280 (450)
T ss_pred Hhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHHH
Confidence 333 3448889999643 222 333333331 223456888875321 22222222 6788999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 333 CELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 333 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
.+++.+++-..+-. ..--+++..-|++.++|.|-.+.-+.
T Consensus 281 ~~iL~~~~~~~gl~----~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 281 TAIIKKEIKNQNIK----QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHhcCCC----CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99999887543210 01225788889999999997665444
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0002 Score=80.33 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=108.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-...+.. -.+.. ...-+.|...-
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~----C~~C~~i~~g~ 86 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---NPCND----CENCREIDEGR 86 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCC----CHHHHHHhcCC
Confidence 3579999999999999997764 1345789999999999999988863111111100 00000 00001110000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
... .-........+++.+.+... ..++.-++|+|+++.. +..+.+...+......+++|++|.+. .+..-.
T Consensus 87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 000 00000112333333322211 1256678999999864 46777777777666667777766433 222112
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
......+++++++.++....+...+-..+- .. -.+....|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCcHHHHH
Confidence 222367889999999887776655533221 11 13456778899999875443
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=7.4e-07 Score=98.84 Aligned_cols=224 Identities=24% Similarity=0.182 Sum_probs=128.2
Q ss_pred cccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEE
Q 038220 561 ILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHV 640 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 640 (866)
.+..++.|..|++.++.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..+. .+..+.+|+.+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 356677788888888888777665777888888888888888775 4667777888888888777765 45568888888
Q ss_pred eccCccccccCCCC-CCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCC--CCcEEEee
Q 038220 641 YFSEFREMVVNPPA-DASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLK--GLQCLKMQ 717 (866)
Q Consensus 641 ~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~--~L~~L~l~ 717 (866)
++++|... .+... ...+.+++.+.+..+.. ..+.. +..+..+..+++..+.....+. +..+. +|+.+++.
T Consensus 168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i-~~i~~-~~~~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 168 DLSYNRIV-DIENDELSELISLEELDLGGNSI-REIEG-LDLLKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLS 240 (414)
T ss_pred cCCcchhh-hhhhhhhhhccchHHHhccCCch-hcccc-hHHHHHHHHhhcccccceeccC----cccchhHHHHHHhcc
Confidence 88888766 33321 35666677666655522 11111 2223333333444443221111 11112 26666776
Q ss_pred eccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCC-CeEE--ECCCCCccccEEEeecCC
Q 038220 718 SRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLG-KEMV--SSSGGFSQLQFLKLSNLC 794 (866)
Q Consensus 718 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~--~~~~~~~~L~~L~l~~~~ 794 (866)
.|.+. ..+..+..+.++..|++.++.+... ..+...+.+..+....+.+.. .... ......+.+..+.+..++
T Consensus 241 ~n~i~--~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 241 GNRIS--RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cCccc--cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 65432 2212334456777777777765322 233444555555554444331 0111 113456667777776665
Q ss_pred CCc
Q 038220 795 YLE 797 (866)
Q Consensus 795 ~l~ 797 (866)
.-.
T Consensus 317 ~~~ 319 (414)
T KOG0531|consen 317 IRK 319 (414)
T ss_pred ccc
Confidence 443
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.95 E-value=0.00014 Score=73.52 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=91.9
Q ss_pred eechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCC
Q 038220 169 VGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLG 248 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~ 248 (866)
.|..+.....+..+.........+.|+|..|+|||+||+.+++.. ..... ...+++..... .. .
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~-~~~~i~~~~~~------~~----~---- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA-SYGGR-NARYLDAASPL------LA----F---- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HhCCC-cEEEEehHHhH------HH----H----
Confidence 355444433333332222234678899999999999999999841 12221 24444432210 00 0
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhH--HHHHhhCCC-CCCCc-EEEEEecchhhhh--------ccC
Q 038220 249 KADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAW--DDLKAVFPD-AKNGS-RIIFTTRFKDVAV--------YAD 316 (866)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~iivTtR~~~v~~--------~~~ 316 (866)
... ...-+||+||++....+ +.+...+.. ...+. .+|+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 23447889999754322 233333321 12334 3666666433211 111
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhc
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLL 379 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l 379 (866)
. ...+++.+++.++-..++.+.+-..+- ..+ ++....+++.+.|++..+..+...+
T Consensus 148 ~-~~~i~l~pl~~~~~~~~l~~~~~~~~v---~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 W-GLVYELKPLSDADKIAALKAAAAERGL---QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred c-CeEEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 257899999998877776654322211 122 4677778888999998776655544
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=97.93 E-value=0.00022 Score=72.04 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=86.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.|+|..|+|||.|++.+++. ....-..++|++... +... .. .+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~-----------------~~----~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR-----------------GP----ELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh-----------------hH----HHHHhhh
Confidence 57899999999999999999873 222223466765432 1110 01 1222222
Q ss_pred cCcEEEEEecCCCh---hhHHH-HHhhCCC-CCCCcEEEEEecchhhh---------hccCCCCCCeeccCCChHHHHHH
Q 038220 270 ERRFIIVLDDIWEK---EAWDD-LKAVFPD-AKNGSRIIFTTRFKDVA---------VYADPGSPPYELCLLNEEDSCEL 335 (866)
Q Consensus 270 ~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~v~---------~~~~~~~~~~~l~~L~~~~~~~L 335 (866)
+-. ++|+||+... ..|.. +...+.. ...|..+|+|++...-. ..+.. ..++++.+++.++-..+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~-gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL-ALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc-CeeeecCCCCHHHHHHH
Confidence 222 6788999633 34543 3333321 23456788888643211 11111 16788999999999999
Q ss_pred HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 336 LFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 336 f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
+.+++....- ..+ .++...|++.+.|..-.+..
T Consensus 175 l~~ka~~~~~---~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 175 LQLRASRRGL---HLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHcCC---CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 9866654321 122 46777788888776654443
No 114
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=1.7e-06 Score=83.71 Aligned_cols=85 Identities=21% Similarity=0.216 Sum_probs=59.7
Q ss_pred cCCCeeEEEEecCCccc-----cCcccccCCCCceEEEeeCCCCc----ccc-------ccccCCCCccEEecCCCccc-
Q 038220 563 EEYKLLQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTWLK----MLP-------SSMGNLFNLQSLDLSSTLVD- 625 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~----~lp-------~~i~~l~~L~~L~l~~~~~~- 625 (866)
.-+..+..++||||.+. ++...|.+-.+|+..+++.-... ++| +.+-+|++|++.+|+.|-++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 33667888999999874 55666777778888888753211 333 34568899999999988332
Q ss_pred c----ccccccccccccEEeccCccc
Q 038220 626 P----IPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 626 ~----lp~~i~~l~~L~~L~l~~~~~ 647 (866)
. +-..|.+-..|.||.+++|..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 2 223467888999999998854
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00034 Score=78.97 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=112.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...-....+. ..+.....-+.|....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCC
Confidence 3578998888888888887653 2357888999999999999999874211110000 0011111111111100
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhhc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAVY 314 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 314 (866)
... .-........+++.. +.+.+ .+++-+||+|+++.. ..++.+...+........+|++|.+ ..+...
T Consensus 87 hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 000 000000112222222 22222 356679999999765 4567777777654445656665544 333322
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch-hHHHHHhhhc
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP-LAIVVLGGLL 379 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~i~~~l 379 (866)
+......+++.+++.++....+...+..... ..+ .+.+..|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222367899999999999888876644321 111 466788899999865 6777665544
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00022 Score=81.42 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=109.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEE-eCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAY-VSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~ 243 (866)
-.++||.+..+..+...+..+. -...+.++|+.|+||||+|+.+.+.......++.-.|.. +...+.....-+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 4578999999888888887653 234588999999999999988876321111111001110 00000000000111000
Q ss_pred HhcC-C-CCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhhhc
Q 038220 244 VLGL-G-KADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVAVY 314 (866)
Q Consensus 244 ~~~~-~-~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 314 (866)
-... . -........+++.+.+... ..+++-++|+|+++.. ...+.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 0 0000111234444333222 2345668999999765 45777887877665566666555 33333322
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
+......+++.+++.++....+.+.+...+. ..+ .+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QID---ADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHhCCCHH
Confidence 2233478999999999988877765543221 111 4677889999999654
No 117
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00031 Score=80.12 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=113.9
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD--CCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~ 241 (866)
.-.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+......... ...+-.+....+ -+.|.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~----C~~i~ 96 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH----CQAIM 96 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH----HHHHh
Confidence 44689999999999999888764 234688999999999999999987311111000 000000111100 01111
Q ss_pred HHHhcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhh
Q 038220 242 KKVLGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDV 311 (866)
Q Consensus 242 ~~~~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v 311 (866)
...... .-........+++.+.+ +.+ .+++-++|+|+++.. ...+.+...+......+++|++| ....+
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 100000 00000122334443322 222 245668999999755 45677777776666667776665 33333
Q ss_pred hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 312 AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
...+......+++..++.++....+.+.+...+. ... .+....|++.++|.+.-+..
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222223367899999999999988877644321 111 36678899999998865543
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.0003 Score=83.07 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=110.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-....... .+....+ -+.|...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~~g- 84 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALAPG- 84 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHHcC-
Confidence 3578999999999999988764 22457899999999999999987642111110000 0000000 0000000
Q ss_pred hcCCCC------ccccCCHHHHHHHHHHH-----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hh
Q 038220 245 LGLGKA------DLDKMHMEDMKEELSNF-----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KD 310 (866)
Q Consensus 245 ~~~~~~------~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~ 310 (866)
..... .......+++.+ +++. ..++.-++|||+++.. ..++.|...+......+.+|++|.+ ..
T Consensus 85 -~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 85 -GPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred -CCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00000 001112333333 2221 2355668999999865 5677888888766666767766643 33
Q ss_pred hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 311 VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 311 v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
+..-+......|++..++.++..+++.+..-..+. .. -.+....|++.++|.+..+
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHH
Confidence 33323333478999999999988888765533221 11 1355678899999988433
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=0.00032 Score=74.99 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=85.6
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
.-.+++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...++.+. .. ...+++.+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~ 90 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTR 90 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHH
Confidence 44688999999999999987653 3467888999999999999999884 2111 23333333 11 1111111111
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPGS 319 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~ 319 (866)
.... . -+.+.+-++|+||++.. +..+.+...+.....++.+|+||.... +........
T Consensus 91 ~~~~----------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 91 FAST----------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHh----------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1110 0 01134568999999754 233445544555556778888886432 111111122
Q ss_pred CCeeccCCChHHHHHHHH
Q 038220 320 PPYELCLLNEEDSCELLF 337 (866)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~ 337 (866)
..+.+...+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 456666677777665544
No 120
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=6.7e-05 Score=76.91 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCc-eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLR-RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.++.+.+|+..+..+..++...+.. +..|.|+|..|.|||.+.+.+.+.. .. ..+|+++-+.|+..-++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHH
Confidence 4567889999999999999876543 4566999999999999999999843 22 3689999999999999999999
Q ss_pred HHhcC-CCCccccCCHHH---HHHHHHHH--hc--cCcEEEEEecCCChhhHHHHH-hh---CC-CCCCCcEEEEEecch
Q 038220 243 KVLGL-GKADLDKMHMED---MKEELSNF--LQ--ERRFIIVLDDIWEKEAWDDLK-AV---FP-DAKNGSRIIFTTRFK 309 (866)
Q Consensus 243 ~~~~~-~~~~~~~~~~~~---~~~~l~~~--L~--~k~~LlVlDdv~~~~~~~~l~-~~---l~-~~~~gs~iivTtR~~ 309 (866)
+.... ..+.....+.+. .+..+.++ .. ++.++||||+++...+.+.+. .. ++ -.......|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98532 121111111122 22233331 11 458999999997665443321 11 11 011123344444332
Q ss_pred hhhhcc---CCC-CCCeeccCCChHHHHHHHHHH
Q 038220 310 DVAVYA---DPG-SPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 310 ~v~~~~---~~~-~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
.-..+. +.. ..++....-+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 222222 111 145677788889998888653
No 121
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.90 E-value=0.00015 Score=70.09 Aligned_cols=174 Identities=20% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCCCeeechhhHHHHHHHHhc---CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIH---GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
.-.+|||.+.-++.+.-++.. .++...-+.+||++|+||||||.-+.+. ....|. +.+.. ...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~-------- 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIE-------- 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C----------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhh--------
Confidence 346899999888876555442 3445788999999999999999999983 444432 22211 110
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--hHHHHHhhCCC--------CCCCc----------
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--AWDDLKAVFPD--------AKNGS---------- 300 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~l~~--------~~~gs---------- 300 (866)
...++...+.. + +++-+|.+|+++... .-+.+..++-+ .+.++
T Consensus 88 ---------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 88 ---------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred ---------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 00122222222 2 245577779887642 22333333221 11111
Q ss_pred -EEEEEecchhhhhccCCCC-CCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 301 -RIIFTTRFKDVAVYADPGS-PPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 301 -~iivTtR~~~v~~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
-|=-|||...+..-..... .+.+++..+.+|-.++..+.+..-. -+--.+.+.+|++.|.|.|--+.-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~------i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN------IEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-------EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC------CCcCHHHHHHHHHhcCCChHHHHH
Confidence 2223777655544333322 3357999999999999987665432 123367889999999999964443
No 122
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.4e-05 Score=56.19 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=25.0
Q ss_pred CceEEEeeCCCCccccccccCCCCccEEecCCCcccccc
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIP 628 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp 628 (866)
+|++|++++|.|+.+|+.+++|++|++|++++|.+..++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777777666677777777777776655544
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.88 E-value=3.7e-05 Score=81.17 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=61.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC--CCHHHHHHHHHHHHhcCCCCc--cccCCH-HHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE--YRKWEILQDLCKKVLGLGKAD--LDKMHM-EDMKEEL 264 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~~~~~~--~~~~~~-~~~~~~l 264 (866)
..++|+|++|+|||||++.+++... .++|+..+|+.+..+ .+..++++.+...+....... ...... ..+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 5889999999999999999999632 347999999999866 678888888755433321111 110000 1111122
Q ss_pred HHH-hccCcEEEEEecCCCh
Q 038220 265 SNF-LQERRFIIVLDDIWEK 283 (866)
Q Consensus 265 ~~~-L~~k~~LlVlDdv~~~ 283 (866)
... -++++.+|++|++...
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 222 2579999999999543
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00043 Score=78.34 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=105.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+...-..... .-.+... ..-..+...-
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pcg~C----~~C~~i~~~~ 86 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---ATPCGVC----SACLEIDSGR 86 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCCCC----HHHHHHhcCC
Confidence 3578999999999998888754 134568999999999999999876311110000 0000000 0000000000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
... .-........+++.+.+... ..+++-++|+|+++.. ...+.+...+......+.+|++|.+. .+..-+
T Consensus 87 ~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 000 00000011223333222211 1256679999999865 35677777777655566677666433 222111
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
......+++++++.++..+.+.+.+...+- . .-.+....|++.++|.+-
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENI---P---FDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---C---CCHHHHHHHHHHcCCCHH
Confidence 111267899999999988888765543221 1 113566788999999775
No 125
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00043 Score=71.97 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=72.7
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhcc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQE 270 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 270 (866)
-+.++|++|+||||+|+.++....-.......-++.++. .+ ++..+.+. ........+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~--------~~~~~~~~~~~---a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH--------TAPKTKEILKR---A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc--------chHHHHHHHHH---c
Confidence 588999999999999977765210011111112444442 11 22222221 01122222222 1
Q ss_pred CcEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEecchhhhhccCCC-------CCCeeccCCChHHH
Q 038220 271 RRFIIVLDDIWEK-----------EAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPG-------SPPYELCLLNEEDS 332 (866)
Q Consensus 271 k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~-------~~~~~l~~L~~~~~ 332 (866)
..-+|+||++... +.++.+...+.....+.+||.++..+....+.... ...+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468899998632 23455566665555566777776544332221111 25689999999999
Q ss_pred HHHHHHHHhC
Q 038220 333 CELLFKKAFA 342 (866)
Q Consensus 333 ~~Lf~~~~~~ 342 (866)
.+++....-.
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998876643
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00031 Score=81.01 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=111.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+......... ....+......+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 3589999999999988887654 234678999999999999999986321100000 000111111222221111
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhhc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAVY 314 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~ 314 (866)
... .-........+++.+. .+.+ .+++-++|+|+++.. +..+.+...+......+.+|++|.+ ..+...
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~i-i~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREI-IERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEEeccccCCHHHHHHH-HHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 000 0000011223333322 2222 245678999999754 4567777777655556666666643 233222
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
.......+.+..++.++....+.+.+...+. ..+ .+.+..|++.++|.+..+..
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~---~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLE---PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222367888899999988888776644321 111 46778899999998865443
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00067 Score=76.95 Aligned_cols=199 Identities=18% Similarity=0.156 Sum_probs=111.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+...-....+ +..+... ..-+.+...-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhccc
Confidence 3578999999999999988764 234578999999999999999886311111000 0001110 0001110000
Q ss_pred hcC-C---CCccccCCHHHHHH---HHHHH-hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chhhhh
Q 038220 245 LGL-G---KADLDKMHMEDMKE---ELSNF-LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKDVAV 313 (866)
Q Consensus 245 ~~~-~---~~~~~~~~~~~~~~---~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~ 313 (866)
... . -........+++.+ .+... ..+++-++|+|+++.. ...+.+...+........+|++|. ...+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 000 0 00001112233322 11111 1245668999999754 567778777776666666666554 333332
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh-HHHHHhh
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL-AIVVLGG 377 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~i~~ 377 (866)
-+......+++.+++.++..+.+.+.+...+. ..+ .+....|++.++|.+- |+..+-.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22222378999999999988888776543221 111 3566778899999774 4444433
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.0024 Score=70.74 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=98.0
Q ss_pred CeeechhhHH--HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHH
Q 038220 167 DIVGLGEDMM--ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF--DCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 167 ~~vGr~~~~~--~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.++|...... .+.++..........+.|+|..|+|||+|++.+++. +.... ..+++++. .+...++..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~ 183 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVN 183 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHH
Confidence 3567555422 222222222222456899999999999999999984 33322 23556543 333444444
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh---hH-HHHHhhCCC-CCCCcEEEEEecch-h-h----
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE---AW-DDLKAVFPD-AKNGSRIIFTTRFK-D-V---- 311 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~-~-v---- 311 (866)
.+... ..+.. .+.+.+ .-+||+||++... .+ +.+...+.. ...+..+|+|+... . .
T Consensus 184 ~~~~~--------~~~~~----~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 184 ALRNN--------KMEEF----KEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred HHHcC--------CHHHH----HHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhh
Confidence 44321 12222 233322 3488899997531 11 223222221 12345578877532 1 1
Q ss_pred ---hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 312 ---AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 312 ---~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
...+.. ..++.+.+.+.++-..++.+.+..... ..+ +++...|++.+.|.+-.+
T Consensus 251 ~~l~SRl~~-g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 251 ERLRSRFEW-GLVVDIEPPDLETRLAILQKKAEEEGL---ELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred hhhhhhccC-CeEEEeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhcCCCHHHH
Confidence 111111 146899999999999999988765331 222 567788888888876543
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.80 E-value=0.00025 Score=70.64 Aligned_cols=179 Identities=21% Similarity=0.259 Sum_probs=94.5
Q ss_pred Ceeechhh-HHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhcCccccCCC-C-ceEEEEeCCCCCHHHHHHHHHH
Q 038220 167 DIVGLGED-MMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF-D-CCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 167 ~~vGr~~~-~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.++|-..+ .-.....+... +.....+.|+|..|+|||.|.+.+++. +.+.. + .++|++ ..+....+..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHH
Confidence 34454332 22333434333 323446789999999999999999983 33322 2 355654 3444555554
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhHHH-HHhhCC-CCCCCcEEEEEecchhh------
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAWDD-LKAVFP-DAKNGSRIIFTTRFKDV------ 311 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-l~~~l~-~~~~gs~iivTtR~~~v------ 311 (866)
.+... .. ..+++.+. .-=+|++||++.. ..|.. +...+. -...|.++|+|++....
T Consensus 82 ~~~~~--------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 82 ALRDG--------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHTT--------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHcc--------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 44332 11 22333343 4457889999754 22322 222221 11346689999954321
Q ss_pred ---hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 312 ---AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 312 ---~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
...+..+ .++++.+.+.++-.+++.+.+...+- ..+ ++++.-|++.+.+..-.+.
T Consensus 149 ~~L~SRl~~G-l~~~l~~pd~~~r~~il~~~a~~~~~---~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 149 PDLRSRLSWG-LVVELQPPDDEDRRRILQKKAKERGI---ELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHCS-EEEEE----HHHHHHHHHHHHHHTT-----S----HHHHHHHHHHTTSSHHHHH
T ss_pred hhhhhhHhhc-chhhcCCCCHHHHHHHHHHHHHHhCC---CCc---HHHHHHHHHhhcCCHHHHH
Confidence 1222222 57899999999999999988765432 122 4666667777665554443
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.80 E-value=0.00076 Score=70.10 Aligned_cols=134 Identities=18% Similarity=0.149 Sum_probs=73.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.++|++|+||||+|+.++........-...-|+.++.. + +.....+. ........+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~--------~~~~~~~~l~~--- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGH--------TAPKTKEVLKK--- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhcc--------chHHHHHHHHH---
Confidence 45889999999999999999763110111111124444421 1 22222121 01112222222
Q ss_pred cCcEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEecchhhhhcc-------CCCCCCeeccCCChHH
Q 038220 270 ERRFIIVLDDIWEK-----------EAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYA-------DPGSPPYELCLLNEED 331 (866)
Q Consensus 270 ~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~-------~~~~~~~~l~~L~~~~ 331 (866)
...-+|++|++... +..+.+...+.+.....+||.++..+.+.... ......+..++++.++
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 12358999998642 23344555555555566777777544432211 1112578999999999
Q ss_pred HHHHHHHHHhC
Q 038220 332 SCELLFKKAFA 342 (866)
Q Consensus 332 ~~~Lf~~~~~~ 342 (866)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00078 Score=77.49 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=109.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccc---------------------cCCCCceE
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDV---------------------KKHFDCCA 223 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~~~~ 223 (866)
-.+++|.+...+.+..++..+. -...+.++|+.|+||||+|+.+.....- ..+|+. .
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 3578999999999999987764 2356889999999999999887763110 112221 1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCC
Q 038220 224 WAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAK 297 (866)
Q Consensus 224 wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~ 297 (866)
.+..+.. ...+++...+... ..+++-++|+|+++.. ..++.+...+....
T Consensus 94 ~ld~~~~------------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 94 ELDAASN------------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred Eeccccc------------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1111111 1122232222111 1245568899998765 46778888887666
Q ss_pred CCcEEEEEe-cchhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 298 NGSRIIFTT-RFKDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 298 ~gs~iivTt-R~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
..+.+|++| +...+...+......+++.+++.++....+.+.+...+- ... .+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHH
Confidence 667666655 444443333333478999999999999888776544321 111 356788999999976533
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00047 Score=75.27 Aligned_cols=156 Identities=24% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY 231 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 231 (866)
....++.|+++.++++.+.+... -...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh--
Confidence 34457899999999988876421 123567899999999999999999983 2222 233321
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh-------------hhHHHHHhhC---C
Q 038220 232 RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK-------------EAWDDLKAVF---P 294 (866)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------------~~~~~l~~~l---~ 294 (866)
.+ +.....+. .......+.+.. ...+.+|+|||++.. +....+...+ .
T Consensus 199 --~~----l~~~~~g~---------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 199 --SE----LVQKFIGE---------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred --HH----HhHhhccc---------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 11 11111110 011222222222 346789999998642 1122233322 2
Q ss_pred C--CCCCcEEEEEecchhhhh-c-cC--CCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 295 D--AKNGSRIIFTTRFKDVAV-Y-AD--PGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 295 ~--~~~gs~iivTtR~~~v~~-~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
. ...+..||.||...+... . .. .-...+.++..+.++-.++|..+...
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 1 123556777776443211 1 11 11256899999999999999877644
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00025 Score=73.16 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=80.5
Q ss_pred CeeechhhHHHHHHH---Hhc-------C---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 167 DIVGLGEDMMILGNR---VIH-------G---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~---l~~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
.++|.++.+++|.+. ..- + .+....+.++|++|+||||+|+.+++...-...-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478877766655433 211 1 224567889999999999999999863100010011122333221
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh----------hhHHHHHhhCCCCCCCcEEE
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK----------EAWDDLKAVFPDAKNGSRII 303 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~ii 303 (866)
++ .....+. ....+.+.+... ..-+|++|+++.. +..+.+...+........+|
T Consensus 84 -~l----~~~~~g~--------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 -DL----VGEYIGH--------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred -Hh----hhhhccc--------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 11 1111110 011222222221 2358899999742 23444555554444444555
Q ss_pred EEecchhhhh------cc-CCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 304 FTTRFKDVAV------YA-DPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 304 vTtR~~~v~~------~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
+++....... .. ......+++++++.++..+++.+.+..
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5554332211 01 111145788999999999999877644
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00077 Score=71.24 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=124.3
Q ss_pred CCCCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
..++.++||+.+++.+.+++... .+..+-+-|.|.+|.|||.+...++.+..-...=-.++++.+-.--....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 35678999999999999999763 3345678899999999999999999863222111235777666545677888888
Q ss_pred HHHHhcC-CCCccccCCHHHHHHHHHHHhccC--cEEEEEecCCChh--hHHHHHhhCC-CCCCCcEEEEEecchh--hh
Q 038220 241 CKKVLGL-GKADLDKMHMEDMKEELSNFLQER--RFIIVLDDIWEKE--AWDDLKAVFP-DAKNGSRIIFTTRFKD--VA 312 (866)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~--~~~~l~~~l~-~~~~gs~iivTtR~~~--v~ 312 (866)
...+... ..+. ...+..+.+.....+. .+|+|+|.++... .-+.+...|. ..-.++++|+.---.. ..
T Consensus 227 ~~~~~q~~~s~~----~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 227 FSSLLQDLVSPG----TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHhcCCc----hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 8777332 1111 1134455555555443 5899999986431 1111111111 1223555554332111 10
Q ss_pred --------hccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhc
Q 038220 313 --------VYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLL 379 (866)
Q Consensus 313 --------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l 379 (866)
...+-....+.-.|.+.++-.+++..+.-..... ...+..++-.|++.+...|-+--|+.+.-+.+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~-~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS-IFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc-ccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 0011222667888999999999999887543322 12233444445555555555555555555444
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00095 Score=76.68 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=106.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+...+.+..++..+. -.....++|+.|+||||+|+.++...- ..+.. ..+..+... ... .
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~C-------~~~---~ 83 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQEC-------IEN---V 83 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhHH-------HHh---h
Confidence 4578999999999999887754 235667899999999999999876310 10100 000000000 000 0
Q ss_pred hcCCC----CccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhh
Q 038220 245 LGLGK----ADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVA 312 (866)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~ 312 (866)
..... ........+++.+ +.+.+ .+++-++|+|+++.. ..+..+...+-.......+|++| +...+.
T Consensus 84 ~~~~Dvieidaasn~~vd~IRe-Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRE-LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 0000112222222 22222 256669999999754 46777777776555555555544 444443
Q ss_pred hccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 313 VYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 313 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.........+++.+++.++....+...+...+- ... .+.+..|++.++|.+--+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHH
Confidence 222222368999999999998888775543221 111 356778999998876433
No 136
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=3.8e-05 Score=81.60 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred cCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCC-CccccccccCCCCccEEecCCC-ccccccc
Q 038220 563 EEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTW-LKMLPSSMGNLFNLQSLDLSST-LVDPIPL 629 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~-~~~~lp~ 629 (866)
..++.++.|++++|.+..+|. --.+|+.|.+++|. ++.+|..+. .+|++|++++| .+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 334666667777666666652 11246666666533 455555442 45666666666 5555554
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0009 Score=74.28 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=104.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc---------------------CCCCceE
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK---------------------KHFDCCA 223 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~~~~ 223 (866)
-.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+...-. .+++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d--- 91 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD--- 91 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc---
Confidence 4579999999999999887654 23567889999999999999887631100 0111
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCC
Q 038220 224 WAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDA 296 (866)
Q Consensus 224 wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~ 296 (866)
|+.+... .....+++.. +.+.+ .+++-++|+|+++.. ...+.+...+...
T Consensus 92 ~~~i~g~----------------------~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep 148 (451)
T PRK06305 92 VLEIDGA----------------------SHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP 148 (451)
T ss_pred eEEeecc----------------------ccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC
Confidence 1111100 0111222221 11111 256778999998754 3556677777665
Q ss_pred CCCcEEEEEecc-hhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 297 KNGSRIIFTTRF-KDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 297 ~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
.....+|++|.. ..+...+......+++.++++++....+...+-..+. .. -++.+..|++.++|.+-
T Consensus 149 ~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i---~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 149 PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ET---SREALLPIARAAQGSLR 217 (451)
T ss_pred CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHH
Confidence 556667666633 2332222222367899999999988888776543221 11 14677889999999764
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.73 E-value=0.001 Score=65.89 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=85.8
Q ss_pred CCCCeeechh--hHHHHHHHHhcCCCce--EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 164 SEEDIVGLGE--DMMILGNRVIHGGLRR--SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 164 ~~~~~vGr~~--~~~~l~~~l~~~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
.+.-++|.-. ....+.++-...+... +.+.|+|++|+|||+|++.+++... . .++. ..+.
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~------- 78 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF------- 78 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh-------
Confidence 3455667522 3334444432211112 5789999999999999999887421 1 1111 0000
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCC-CCCCCcEEEEEecchhh-------
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFP-DAKNGSRIIFTTRFKDV------- 311 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~-~~~~gs~iivTtR~~~v------- 311 (866)
. + +.+ ...-++++||++..+. ..+...+. -...|..+|+|++....
T Consensus 79 -------~----------~-------~~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L 132 (214)
T PRK06620 79 -------N----------E-------EIL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDL 132 (214)
T ss_pred -------c----------h-------hHH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHH
Confidence 0 0 011 1335788899974321 11222211 11346688998874432
Q ss_pred hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhH
Q 038220 312 AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLA 371 (866)
Q Consensus 312 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 371 (866)
...+..+ .++++++++.++-..++.+.+...+- ..+ +++..-|++.+.|..-.
T Consensus 133 ~SRl~~g-l~~~l~~pd~~~~~~~l~k~~~~~~l---~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 133 SSRIKSV-LSILLNSPDDELIKILIFKHFSISSV---TIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHhCC-ceEeeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHccCCHHH
Confidence 1122222 57899999999988888776643211 122 46677777777765543
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=6.9e-05 Score=80.60 Aligned_cols=120 Identities=14% Similarity=0.165 Sum_probs=77.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
..++++.++..+.+...+.... .+.++|++|+|||++|+.+++.......|+.+.||.++..++..+.+..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--- 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--- 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC---
Confidence 3468888999999999998754 788899999999999999998544455778899999999887666554221
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh---hHHHHHhhCC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE---AWDDLKAVFP 294 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~---~~~~l~~~l~ 294 (866)
.... ... .......+.+..... ++++++|+|++.... .+..+...+.
T Consensus 247 -P~~v-gy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 -PNGV-GFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred -CCCC-CeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1000 000 000111222222222 468999999997542 3455544443
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.72 E-value=0.003 Score=70.87 Aligned_cols=202 Identities=20% Similarity=0.169 Sum_probs=109.1
Q ss_pred Ceeechhh--HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHHHH
Q 038220 167 DIVGLGED--MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD--CCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 167 ~~vGr~~~--~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.++|.... ......+....+....-+.|+|..|+|||+|++.+++. +...+. .+++++.. ++..++..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~ 195 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVN 195 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHH
Confidence 35565443 23333333332223456899999999999999999984 433332 24555432 33334444
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEecchh-------
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAW-DDLKAVFPD-AKNGSRIIFTTRFKD------- 310 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR~~~------- 310 (866)
.+... ..+ .+.+.++ +.-+||+||++.. +.+ +.+...+.. ...|..+|+|+....
T Consensus 196 ~~~~~--------~~~----~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 196 ALRNN--------TME----EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE 262 (450)
T ss_pred HHHcC--------cHH----HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 33221 112 2233333 3448999999643 111 223322211 112445788775431
Q ss_pred --hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH----Hhhh--ccCC
Q 038220 311 --VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV----LGGL--LSSK 382 (866)
Q Consensus 311 --v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~----i~~~--l~~~ 382 (866)
+...+..+ .++++++.+.++-.+++.+.+...+. ..+ .++...|++.+.|..-.+.- +..+ +..+
T Consensus 263 ~~l~SRl~~g-l~v~i~~pd~~~r~~il~~~~~~~~~---~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~ 335 (450)
T PRK00149 263 ERLRSRFEWG-LTVDIEPPDLETRIAILKKKAEEEGI---DLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGK 335 (450)
T ss_pred HHHHhHhcCC-eeEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCC
Confidence 12222222 57899999999999999988764321 222 46788888888887654332 2211 1222
Q ss_pred CCCHHHHHHHHHhh
Q 038220 383 EATYSEWLKVLQSV 396 (866)
Q Consensus 383 ~~~~~~w~~~l~~~ 396 (866)
.-+....+.+++..
T Consensus 336 ~it~~~~~~~l~~~ 349 (450)
T PRK00149 336 PITLELAKEALKDL 349 (450)
T ss_pred CCCHHHHHHHHHHh
Confidence 33556666666554
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0015 Score=72.91 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=106.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+.....+..++..+. -.....++|+.|+||||+|+.++....-...-+ +-.+....+- ..+
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~---~~pc~~c~nc--------~~i 82 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE---GEPCGKCENC--------VEI 82 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC---CCCCCccHHH--------HHH
Confidence 3578899999999999887754 234567899999999999999876311000000 0000000000 000
Q ss_pred hcCCCCc------cccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chh
Q 038220 245 LGLGKAD------LDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKD 310 (866)
Q Consensus 245 ~~~~~~~------~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~ 310 (866)
.....++ ......+++. .+.+.. .+++-++|+|+++.. ...+.+...+........+|++|. ...
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 0000000 0111122222 222222 256679999999754 456777777765555566665553 333
Q ss_pred hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 311 VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 311 v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
+..........+.+.+++.++....+.+.+-..+- .. -.+.+..|++.++|.+-.+...
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 32222222367899999999988888776543221 11 1356677888999977544433
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.69 E-value=0.0004 Score=83.08 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC------CCceEE-EEeCCCCCHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH------FDCCAW-AYVSQEYRKWEIL 237 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~v~~~~~~~~~~ 237 (866)
-..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.++.. +... .+..+| +.++.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l------- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL------- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh-------
Confidence 3579999999999999987764 235569999999999999999873 2111 122232 222210
Q ss_pred HHHHHHHhcCCCCccccCCHH-HHHHHHHHHh-ccCcEEEEEecCCChh-------hHH---HHHhhCCCCCCCcEEEEE
Q 038220 238 QDLCKKVLGLGKADLDKMHME-DMKEELSNFL-QERRFIIVLDDIWEKE-------AWD---DLKAVFPDAKNGSRIIFT 305 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~~L-~~k~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivT 305 (866)
..+. . ...+.+ .+...+.+.- .+++.+|++|+++... .-+ .++..+.. ..-++|-+
T Consensus 255 ------~ag~---~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 255 ------QAGA---S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred ------hccc---c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 0000 0 000111 1122222211 2468999999986431 111 24444332 23456666
Q ss_pred ecchhhhhccC------CCCCCeeccCCChHHHHHHHHH
Q 038220 306 TRFKDVAVYAD------PGSPPYELCLLNEEDSCELLFK 338 (866)
Q Consensus 306 tR~~~v~~~~~------~~~~~~~l~~L~~~~~~~Lf~~ 338 (866)
|..++...+.. .....+.+++++.+++.+++..
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 65543322111 1226899999999999999743
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0017 Score=72.57 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=110.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|-+...+.+...+..+. -..+..++|+.|+||||+|+.+.+..--....+.. .+... ..-..+....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---pC~~C----~~C~~~~~~~ 84 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---PCDTC----IQCQSALENR 84 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---CCccc----HHHHHHhhcC
Confidence 3578999988899998887664 23466899999999999999877531000000000 00000 0000000000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
... ..........+++.+.+... ..+++-++|+|+++.. +..+.+...+-.....+++|++|.+. .+....
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 000 00000111233444433221 1145668999999765 45667777776555667777777543 222112
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
......+++.+++.++....+.+.+...+. .. -.+.+..|++.++|.+--+..+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGV---SY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 222378999999999998888766544321 11 1467788999999988544433
No 144
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=3.3e-05 Score=54.29 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=35.2
Q ss_pred CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc
Q 038220 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP 605 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp 605 (866)
++|++|++++|.+..+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4689999999999999988999999999999999998776
No 145
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=7.8e-07 Score=97.27 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=83.3
Q ss_pred chhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccc
Q 038220 674 CVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKE 753 (866)
Q Consensus 674 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~ 753 (866)
.+.++|.-++.|++|+++.|.+...+ .+..++.|++|+|++|. ...+|.....-.+|..|+|++|.++. +..
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~--L~~vp~l~~~gc~L~~L~lrnN~l~t--L~g 249 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNC--LRHVPQLSMVGCKLQLLNLRNNALTT--LRG 249 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccch--hccccccchhhhhheeeeecccHHHh--hhh
Confidence 34445777888999999988764443 56778999999999876 33455444433469999999997743 346
Q ss_pred cCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCc
Q 038220 754 LEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLE 797 (866)
Q Consensus 754 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 797 (866)
+.+|.+|+.|++++|-+.+..-...+..+..|+.|.|.+|+...
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 78899999999998877653322234567788888998887653
No 146
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0021 Score=73.98 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=109.9
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+.....|..++..+. -...+.++|+.|+||||+|+.+++...- ...+.... ..+.....-+.+....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~~----~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPTP----EPCGKCELCRAIAAGN 88 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCCC----CCCcccHHHHHHhcCC
Confidence 3578999999999999888764 2246789999999999999999874211 11100000 0111111111111110
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
... ..........+++.+.+... ..+++-++|+|+++.. ..++.+...+........+|++|.+. .+..-+
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 000 00000112233333333221 1245668999999865 46777877777655556666555433 222222
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
......+++..++.++....+...+...+. ... .+.+..|++.++|.+..+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCC---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222366888899998888777765543221 111 35678899999998764443
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00041 Score=82.42 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=85.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCc---cccCCC-CceEEEEeCCCCCHHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSS---DVKKHF-DCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~f-~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++... .+-..+ +..+|. ++ ... +.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~----l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGS----LL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHH----Hh
Confidence 478999999999999887754 2346799999999999999998731 111111 233442 11 111 11
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEecch
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK-----------EAWDDLKAVFPDAKNGSRIIFTTRFK 309 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (866)
..... ..+.++....+.+.+ ..++.+|++|+++.. +.-+.++..+..+ .-++|-+|..+
T Consensus 251 a~~~~-------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~ 321 (731)
T TIGR02639 251 AGTKY-------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYE 321 (731)
T ss_pred hhccc-------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHH
Confidence 00000 001222223333333 246889999998632 1123344444321 23444444432
Q ss_pred hhhhc------cCCCCCCeeccCCChHHHHHHHHHHH
Q 038220 310 DVAVY------ADPGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 310 ~v~~~------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
+...+ .......++++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 11122678999999999999998644
No 148
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.61 E-value=0.0013 Score=62.84 Aligned_cols=95 Identities=22% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF-DCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
..-.++||-++.++++.-...++. .+-+.|.||+|+||||=+..+++.. ....+ +.+.=.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELN--------------- 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELN--------------- 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhcc---------------
Confidence 344689999999998877666654 7789999999999999777666521 11111 1111111
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcc-------CcEEEEEecCCChh
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFLQE-------RRFIIVLDDIWEKE 284 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-------k~~LlVlDdv~~~~ 284 (866)
..++...+.+...++.+.+. +.-.+|||..++..
T Consensus 86 ---------ASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 86 ---------ASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ---------CccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 11334556667777666553 34578999998763
No 149
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00014 Score=77.37 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=49.6
Q ss_pred ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCC-ccccccccccccccccEEeccCccccccCCCC
Q 038220 585 IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSST-LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPA 654 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 654 (866)
+..+.++++|++++|.++.+|. -..+|++|.+++| .+..+|..+ ..+|++|.+++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence 4456889999999999999982 2346999999987 777788655 358999999988655456653
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=2.3e-05 Score=90.62 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=57.4
Q ss_pred cccCCCeeEEEEecCCccc--cCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccc--ccccccccc
Q 038220 561 ILEEYKLLQVLDLEGVYMA--LIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPI--PLVIWKMQQ 636 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~l--p~~i~~l~~ 636 (866)
.-.-+|.|+.|.+.|-.+. ++.....++++|+.||+++++++.+ ..+++|++||+|-+++-.+..- -.++.+|++
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 3345677777777776552 3344456677888888888887777 5777888888887766544332 135667888
Q ss_pred ccEEeccCccc
Q 038220 637 LKHVYFSEFRE 647 (866)
Q Consensus 637 L~~L~l~~~~~ 647 (866)
|++||++....
T Consensus 222 L~vLDIS~~~~ 232 (699)
T KOG3665|consen 222 LRVLDISRDKN 232 (699)
T ss_pred CCeeecccccc
Confidence 88888876543
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.002 Score=71.50 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=91.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCC-CC-ceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKH-FD-CCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (866)
..-+.|+|.+|+|||+|++.+++. +... .+ .++|++. .+.+.++...+... ..+. .++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~----f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNE----FRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHH----HHH
Confidence 445999999999999999999984 3332 23 3566643 34455555544321 1122 223
Q ss_pred HhccCcEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEec-chhh--------hhccCCCCCCeeccCCChHHH
Q 038220 267 FLQERRFIIVLDDIWEK---EAW-DDLKAVFPD-AKNGSRIIFTTR-FKDV--------AVYADPGSPPYELCLLNEEDS 332 (866)
Q Consensus 267 ~L~~k~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~~l~~L~~~~~ 332 (866)
.+..+.-+|++||++.. ..+ +.+...+.. ...|..||+||. ...- ...+..+ .++++++.+.++-
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~e~r 268 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEETR 268 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCHHHH
Confidence 33335568999999743 111 223222221 122446888874 2221 1112222 5788999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 333 CELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 333 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
..++.+.+....- ..+ +++...|++.+.|..-.+
T Consensus 269 ~~IL~~~~~~~~~---~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 269 KKIARKMLEIEHG---ELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHhcCC---CCC---HHHHHHHHhccccCHHHH
Confidence 9999888754321 222 567788888888765433
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.0032 Score=71.61 Aligned_cols=195 Identities=13% Similarity=0.074 Sum_probs=111.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|-+..++.+..++..+. -.....++|+.|+||||+|+.+++...-..... ...+....+- +.+...-
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSC----KSIDNDN 86 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHH----HHHHcCC
Confidence 3578999999999999987754 245688999999999999999987421111000 0001111111 1110000
Q ss_pred hcC--CCCccccCCHHHHHHHHHH----HhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSN----FLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~ 315 (866)
... .-........+++.+.... -..+++-++|+|+++.. ..++.+...+......+.+|.+|.. ..+...+
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 0000011223333322211 11356678999999755 4577787777766666767666643 3332222
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
......++..+++.++..+.+.+.+...+- .. -++.+..|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHcCCCHHHHH
Confidence 222367899999999998888776644321 11 14667779999999875443
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.0089 Score=67.49 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=88.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCC--CceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHF--DCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
..+.|+|..|+|||.|++.+++. ....+ ..++|++. .+++.++...+... ..+ .+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~----~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGD----SFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHH----HHHHH
Confidence 45899999999999999999984 33322 23455543 33444444333221 111 22233
Q ss_pred hccCcEEEEEecCCCh---hhHH-HHHhhCCC-CCCCcEEEEEecch---------hhhhccCCCCCCeeccCCChHHHH
Q 038220 268 LQERRFIIVLDDIWEK---EAWD-DLKAVFPD-AKNGSRIIFTTRFK---------DVAVYADPGSPPYELCLLNEEDSC 333 (866)
Q Consensus 268 L~~k~~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~l~~L~~~~~~ 333 (866)
+.+ -=+|||||+... +.|. .+...+.. ...+..|||||+.. .+...+... .+++|...+.+.-.
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~EtR~ 452 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELETRI 452 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHHHH
Confidence 332 357889999753 2232 22222221 12345688888642 122222222 67899999999999
Q ss_pred HHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 334 ELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 334 ~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.++.+++....- ..+ .+++.-|++.+.+..-.+
T Consensus 453 aIL~kka~~r~l---~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 453 AILRKKAVQEQL---NAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHhcCC---CCC---HHHHHHHHHhccCCHHHH
Confidence 999988755331 222 567777777776654433
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0021 Score=73.77 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=107.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.++||.+.-.+.|...+..+. -.....++|+.|+||||+|+.+.+...-....+. ..+.....-..|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 4589999998999998887754 2345689999999999999988763111110000 0000000000000000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe-cchhhhhc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT-RFKDVAVY 314 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v~~~ 314 (866)
... .-........+++.+ +.+.+ .+++-++|+|+++.. ...+.+...+-.....+.+|++| ....+..-
T Consensus 87 ~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 000 000000112222222 22222 245568999999754 45677777776555566666555 43444332
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch-hHHHHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP-LAIVVL 375 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~i 375 (866)
+......++..+++.++....+...+...+- .. -.+....|++.++|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2223367889999999888777665433221 11 1466778899998866 444444
No 155
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.55 E-value=1.6e-05 Score=77.25 Aligned_cols=234 Identities=17% Similarity=0.037 Sum_probs=127.9
Q ss_pred ccCCCCceEEEeeCCCCc-----cccccccCCCCccEEecCCCccc----ccc-------ccccccccccEEeccCcccc
Q 038220 585 IGNLIHLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLVD----PIP-------LVIWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~----~lp-------~~i~~l~~L~~L~l~~~~~~ 648 (866)
+..+..+..++|++|.|. .+...|.+-.+|+..+++.-..+ ++| +.+-+|++|+..++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344778999999999986 46667777788999998865222 233 34567888888888888665
Q ss_pred ccCCCC----CCCCCCCceecceeecCC----cchhHhh---------ccccCCCeEEEEcccchh--HHHHHHhhcCCC
Q 038220 649 VVNPPA----DASLPNLQTLLGICICET----SCVEQGL---------DKLLNLRELGLHGDLILH--EEALCKWIYNLK 709 (866)
Q Consensus 649 ~~~p~~----~~~l~~L~~L~~~~~~~~----~~~~~~l---------~~l~~L~~L~l~~~~~~~--~~~l~~~l~~~~ 709 (866)
...|+. +.+-++|.+|.+.+|+.. ..+...+ ..-+.|+...+..|...+ .......+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 455543 345567777777766542 1122111 223455555555554221 112223344445
Q ss_pred CCcEEEeeeccccccccCC----ccCCCCCceEEEEEeecCCCCCccc----cCCCCCCCeeEEeccccCCCeE-----E
Q 038220 710 GLQCLKMQSRITYTVDLSD----VQNFPPNLTELSLQFCFLTEDPLKE----LEKLPNLRVLKLKQSSYLGKEM-----V 776 (866)
Q Consensus 710 ~L~~L~l~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~l~~~~~~~----l~~l~~L~~L~L~~~~~~~~~~-----~ 776 (866)
+|+.+.+..|.+-...+.. -...+++|+.|+|.+|.++-..... +..-+.|+.|.+..|-+..... .
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 6677776665432111110 1123466777777777655433222 2334556777774444332110 0
Q ss_pred ECCCCCccccEEEeecCCCCcceE-------EccCcccccceeeEeecc
Q 038220 777 SSSGGFSQLQFLKLSNLCYLERWR-------IEEGAMCNLRRLEIIECM 818 (866)
Q Consensus 777 ~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~p~L~~L~l~~c~ 818 (866)
+.--.+|+|..|.+.+|..-.... +..+++|-|..|.+.+|.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 111246667777666655433221 123466777766666665
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0029 Score=67.01 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=64.0
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCC
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNA 346 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 346 (866)
+++-++|+|+++.. ...+.+...+-....++.+|++|.+.. +..-+......+.+.+++.+++.+.+........
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 34556678999865 466777777776666777888887653 2222222236799999999999988876531111
Q ss_pred CCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 347 MSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
.+.+..++..++|.|..+..+
T Consensus 183 --------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 --------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --------hHHHHHHHHHcCCCHHHHHHH
Confidence 244567889999999765544
No 157
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.51 E-value=0.031 Score=59.72 Aligned_cols=216 Identities=16% Similarity=0.145 Sum_probs=127.4
Q ss_pred chhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHH-HHHhcCccccCCCCceEEEEeCCCC---CHHHHHHHHHHHHhc
Q 038220 171 LGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDCCAWAYVSQEY---RKWEILQDLCKKVLG 246 (866)
Q Consensus 171 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~~---~~~~~~~~i~~~~~~ 246 (866)
|.+..++|..||.+.. -..|.|.|+-|+||+.|+ .++..+. ..++.++|.+-. +....+..++.+++.
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 6678899999999875 369999999999999999 7777752 225666654322 233444444444432
Q ss_pred C----------------------CCCccccCCHHHHHHHH-------HH-------------------Hhc---cCcEEE
Q 038220 247 L----------------------GKADLDKMHMEDMKEEL-------SN-------------------FLQ---ERRFII 275 (866)
Q Consensus 247 ~----------------------~~~~~~~~~~~~~~~~l-------~~-------------------~L~---~k~~Ll 275 (866)
. ...........++...+ ++ +|+ .++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1 01112222222222221 11 111 126789
Q ss_pred EEecCCCh-----hhHHHHHh---hCCCCCCCcEEEEEecchhhhhccCC-----CCCCeeccCCChHHHHHHHHHHHhC
Q 038220 276 VLDDIWEK-----EAWDDLKA---VFPDAKNGSRIIFTTRFKDVAVYADP-----GSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 276 VlDdv~~~-----~~~~~l~~---~l~~~~~gs~iivTtR~~~v~~~~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
|+|+.... -.|+.+.. .+ -..+-.+||++|-+......... ....+.|...+++.|.++..++...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99997542 12233222 12 23456789998877655443321 1266889999999999999888755
Q ss_pred CCCCC---------CCC-----ChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHh
Q 038220 343 GGNAM---------SSL-----PPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQS 395 (866)
Q Consensus 343 ~~~~~---------~~~-----~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~ 395 (866)
..... ... .....+.....++..||=-.-+..+++.++......+--..+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 31100 000 012344556778889999999999999998765533444444443
No 158
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.004 Score=68.06 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=84.6
Q ss_pred hhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCcc
Q 038220 173 EDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADL 252 (866)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~ 252 (866)
.-..++.+.+.... .++.|.|+-++||||+++.+... ..+. .+++..........-+.+..
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------
Confidence 33444444444433 29999999999999999777763 2221 45554333211111111111
Q ss_pred ccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhh-----hhccCCCCCCeeccCC
Q 038220 253 DKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDV-----AVYADPGSPPYELCLL 327 (866)
Q Consensus 253 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-----~~~~~~~~~~~~l~~L 327 (866)
..+...-..++..++||.|+....|......+.+.+.. ++++|+-+... +....+....+++-||
T Consensus 85 ---------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 85 ---------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ---------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 11111111277899999999999999998888877766 89988876543 3333344477999999
Q ss_pred ChHHHHHH
Q 038220 328 NEEDSCEL 335 (866)
Q Consensus 328 ~~~~~~~L 335 (866)
+..|...+
T Consensus 155 SF~Efl~~ 162 (398)
T COG1373 155 SFREFLKL 162 (398)
T ss_pred CHHHHHhh
Confidence 99998764
No 159
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.49 E-value=0.00044 Score=69.08 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=109.3
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEE-EEeCCCCCHHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAW-AYVSQEYRKWEILQDLC 241 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~v~~~~~~~~~~~~i~ 241 (866)
..-.+++|.+..++.+...+... ..++...+|++|.|||+-|..++...--.+-|.+.+. .++|..-.. .+.++=.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi-svvr~Ki 109 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI-SVVREKI 109 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc-cchhhhh
Confidence 34567899999999888888773 4678999999999999998887764222344444322 233322111 1111000
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHh--ccCc-EEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhcc
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFL--QERR-FIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYA 315 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L--~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~ 315 (866)
+. ...+........ .-++ -.||||+.+.. +.|..++..+-+....++.|+.+..- .+...+
T Consensus 110 k~-------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 110 KN-------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred cC-------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 00 000000000000 0123 47889999876 68999999888766667766655433 222211
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
.....-+.-++|..++..+-+...+-..+-. .+ .+..+.|++.++|---
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~---~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVD---ID---DDALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCC---CC---HHHHHHHHHHcCCcHH
Confidence 1222457888899988888887776544321 11 4667778888887543
No 160
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.006 Score=60.10 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=65.4
Q ss_pred CCCCCeeechhhHHHHHHHHhc---CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIH---GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
..-.+++|.+..++.|++-... +. ...-+.++|..|.|||++++.+.+. ... ++.--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~--y~~--~GLRlIev~k~--------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE--YAD--QGLRLIEVSKE--------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH--Hhh--cCceEEEECHH---------
Confidence 4557899999998887765432 32 2456778999999999999999873 111 11223333322
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCC---hhhHHHHHhhCC
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWE---KEAWDDLKAVFP 294 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~l~ 294 (866)
.-.+...+.+.++. ...||+|.+||+.- ...+..++..+.
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 11123444444443 35799999999853 346777777765
No 161
>PRK10536 hypothetical protein; Provisional
Probab=97.48 E-value=0.001 Score=66.32 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=76.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC----------CHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY----------RKWE 235 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~----------~~~~ 235 (866)
..+.+|......+..++...+ ++.+.|.+|.|||+||..+..+.-..+.|+.++... +.-. +..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~----lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~R-P~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ----LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTR-PVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC----eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeC-CCCCchhhhCcCCCCHHH
Confidence 456778888888888887643 999999999999999999887422234454333321 1100 1111
Q ss_pred H----HHHHHHHHhcCCCCccccCCHHHHHHH-----------HHHHhccCcE---EEEEecCCChhhHHHHHhhCCCCC
Q 038220 236 I----LQDLCKKVLGLGKADLDKMHMEDMKEE-----------LSNFLQERRF---IIVLDDIWEKEAWDDLKAVFPDAK 297 (866)
Q Consensus 236 ~----~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------l~~~L~~k~~---LlVlDdv~~~~~~~~l~~~l~~~~ 297 (866)
- +.-+...+...- ..+.+... =..+++++.+ +||+|++++.+. ..++..+...+
T Consensus 130 K~~p~~~pi~D~L~~~~-------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g 201 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRL-------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHh-------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcC
Confidence 1 111222111100 00111111 1235566654 999999987654 45555555567
Q ss_pred CCcEEEEEecchhh
Q 038220 298 NGSRIIFTTRFKDV 311 (866)
Q Consensus 298 ~gs~iivTtR~~~v 311 (866)
.+|++|+|--..++
T Consensus 202 ~~sk~v~~GD~~Qi 215 (262)
T PRK10536 202 ENVTVIVNGDITQC 215 (262)
T ss_pred CCCEEEEeCChhhc
Confidence 89999998765443
No 162
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.44 E-value=0.0014 Score=72.82 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=88.1
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCC-----CCceEEEEeC
Q 038220 165 EEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH-----FDCCAWAYVS 228 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~v~ 228 (866)
-.++.|.+..++++.+.+.- +-...+-+.++|++|.|||++|+.+++. .... .....++.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 35688899999888887642 1123466899999999999999999984 2222 1223444443
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh---------hh-----HHHHHhhC
Q 038220 229 QEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK---------EA-----WDDLKAVF 293 (866)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~---------~~-----~~~l~~~l 293 (866)
.. + ++....+. .......+....+... .+++++|+||+++.. .+ ...+...+
T Consensus 259 ~~----e----Ll~kyvGe-----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GP----E----LLNKYVGE-----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ch----h----hcccccch-----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 21 1 11111000 0001111222222221 247899999999732 11 22343333
Q ss_pred CCC--CCCcEEEEEecchhhhh-c-cC--CCCCCeeccCCChHHHHHHHHHHH
Q 038220 294 PDA--KNGSRIIFTTRFKDVAV-Y-AD--PGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 294 ~~~--~~gs~iivTtR~~~v~~-~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
... ..+..||.||....... . .. .-...++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 321 23444555664433211 1 11 112458999999999999998875
No 163
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.43 E-value=0.0045 Score=67.34 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=85.9
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
.-.++.|.+..+++|.+.+.- +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh---
Confidence 345688988888887776532 1123577999999999999999999984 22222 22211
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------h---hHHHHHhhCCC-
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------E---AWDDLKAVFPD- 295 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~~- 295 (866)
.. +.....+. ....+.+.+.......+.+|++|+++.. . .+..+...+..
T Consensus 213 -s~----l~~k~~ge--------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 -SE----FVQKYLGE--------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred -HH----HHHHhcch--------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 11 11111110 1112222233333457899999997632 0 11222222221
Q ss_pred -CCCCcEEEEEecchhhhh-c-cC--CCCCCeeccCCChHHHHHHHHHHHh
Q 038220 296 -AKNGSRIIFTTRFKDVAV-Y-AD--PGSPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 296 -~~~gs~iivTtR~~~v~~-~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
...+..||.||...+... . .. .-...+.+...+.++...+|.....
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 224566787876543221 1 11 1124578888888888888876553
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.42 E-value=0.00081 Score=62.14 Aligned_cols=88 Identities=18% Similarity=0.060 Sum_probs=47.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...... .............+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGG---KKASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhc---cCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999984 2222223555555443322111111 011110 1111122223334444444
Q ss_pred cC-cEEEEEecCCChh
Q 038220 270 ER-RFIIVLDDIWEKE 284 (866)
Q Consensus 270 ~k-~~LlVlDdv~~~~ 284 (866)
.. ..++++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 43 4999999998763
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0029 Score=66.64 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=109.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccc-------------cCCCCceEEEEeCCCCC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDV-------------KKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~v~~~~~ 232 (866)
.+++|.+...+.+...+..+. -.....++|+.|+||+++|..+.+..-- ...+.-..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 368899999999999887764 2368899999999999999777652100 01111134442210000
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-----cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEE
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-----ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFT 305 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT 305 (866)
...+-.+.++..+.. .........+++. .+.+.+. +++-++|+|+++.. ...+.+...+-... .+.+|++
T Consensus 83 g~~~~~~~~~~~~~~-~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLK-RKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred ccccchhhhhhcccc-ccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 000001111111100 0001112233333 3444443 56778999999765 45666777766444 3455555
Q ss_pred ec-chhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 306 TR-FKDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 306 tR-~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
|. .+.+..-+......+.+.+++.++..+.+.+...... . ......++..++|.|..+..
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----L----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----c----hhHHHHHHHHcCCCHHHHHH
Confidence 54 3333332333347899999999999999987642211 0 11135788999999965543
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0062 Score=69.62 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=106.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.+...+.+..++..+. -.....++|+.|+||||+|+.+.+...-...-+ ...+.....-+.+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 4589999999999999988764 235677899999999999998875211000000 00001101111110000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec-chhhhhcc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTR-FKDVAVYA 315 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~v~~~~ 315 (866)
... .-........+++.+.+... ..++.-++|+|+++.. ..+..+...+........+|++|. ...+..-+
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 00000111223222222111 1346678899999855 467778777765555555565553 33332222
Q ss_pred CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
......++..+++.++....+...+...+- ... .+.+..|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGI---EYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHH
Confidence 222366888899999988888776543221 111 356777888888877543
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.39 E-value=0.0017 Score=78.35 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC------CCceEEEEeCCCCCHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH------FDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~v~~~~~~~~~~~~ 239 (866)
..++||+.++++++..|..... .-+.++|++|+|||++|+.+... +... ....+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~l--- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGAL--- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHHH---
Confidence 4699999999999999977542 34558999999999999998874 2211 12223321 11111
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChh----------hHHHHHhhCCCCCCCcEEEEEec
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKE----------AWDDLKAVFPDAKNGSRIIFTTR 307 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR 307 (866)
+. +. . -..+.+.....+.+.+. +++.+|++|+++... .-+.++..+. .+ .-.+|-+|.
T Consensus 241 -~a---~~---~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g-~i~~IgaTt 310 (852)
T TIGR03346 241 -IA---GA---K-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RG-ELHCIGATT 310 (852)
T ss_pred -hh---cc---h-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cC-ceEEEEeCc
Confidence 10 00 0 00011222222222222 468999999986331 1122332221 11 234555554
Q ss_pred chhhhhcc------CCCCCCeeccCCChHHHHHHHHHHH
Q 038220 308 FKDVAVYA------DPGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 308 ~~~v~~~~------~~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
.+..-.+. .....++.++..+.++...++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44332111 1122568899999999999887543
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.37 E-value=0.00096 Score=60.82 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 038220 192 ISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~ 212 (866)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=4e-06 Score=91.88 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=38.1
Q ss_pred ccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
+.-++.|+.|||+.|.+...- .+..|++|+.|||++|.+..+|..-..-.+|+.|++++|.+.++- ++.+|.+|++|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 333444555555555544332 344455555555555555544431111112555555555444443 445555555555
Q ss_pred ccCc
Q 038220 642 FSEF 645 (866)
Q Consensus 642 l~~~ 645 (866)
+++|
T Consensus 261 lsyN 264 (1096)
T KOG1859|consen 261 LSYN 264 (1096)
T ss_pred hhHh
Confidence 5544
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.36 E-value=0.0013 Score=71.84 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
.++.|.+..++++.+.+.-. -...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 46789999988888776421 123456889999999999999999984 33333 222111
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------hh---HHHHHhhCC--CC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------EA---WDDLKAVFP--DA 296 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~---~~~l~~~l~--~~ 296 (866)
++ .....+. ....+...+.......+.+|+||+++.. +. .-.+...+. ..
T Consensus 252 eL----~~k~~Ge--------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 EL----IQKYLGD--------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred hh----hhhhcch--------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 11 1111110 1111222222222356788999987421 00 111222221 12
Q ss_pred CCCcEEEEEecchhhhhc-c-C--CCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 297 KNGSRIIFTTRFKDVAVY-A-D--PGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 297 ~~gs~iivTtR~~~v~~~-~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
..+.+||+||...+.... + . .....+.+...+.++..++|..+...
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 335678888865433221 1 1 11256888999999999999876643
No 171
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.002 Score=63.73 Aligned_cols=171 Identities=20% Similarity=0.187 Sum_probs=96.7
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
-.+|||.++-++++.=.+... .+.+-.+.++|++|.||||||.-+++. ....+. ++-......
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK-------- 90 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEK-------- 90 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccC--------
Confidence 468999998888877666553 445789999999999999999999984 332221 111111111
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh-hHH-HHHhhCC--------CCCCCcEEE--------
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE-AWD-DLKAVFP--------DAKNGSRII-------- 303 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-~~~-~l~~~l~--------~~~~gs~ii-------- 303 (866)
..++...+.. |+ +.=++.+|.++... ..+ .+-+++- ..++++|.+
T Consensus 91 ---------------~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ---------------PGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ---------------hhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1122222221 22 23345567765431 111 1111111 122233332
Q ss_pred ---EEecchhhhhccCC-CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 304 ---FTTRFKDVAVYADP-GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 304 ---vTtR~~~v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
-|||.-.+..-... ...+.+++-.+.+|-.++..+.+..-+- . --.+.+.+|++...|-|--.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~---i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---E---IDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---C---CChHHHHHHHHhccCCcHHH
Confidence 37774443322211 1156788889999999999887744321 1 12467899999999999533
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.34 E-value=0.0012 Score=77.50 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=85.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC-----CCceEEEEeCCCCCHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH-----FDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~v~~~~~~~~~~~~i 240 (866)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. +.. .+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~----~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIG----SL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHH----HH
Confidence 469999999999999988753 2344689999999999999998631 1111 13344421 111 11
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh----------hhHH-HHHhhCCCCCCCcEEEEEecc
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK----------EAWD-DLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~-~l~~~l~~~~~gs~iivTtR~ 308 (866)
+ .+.. -..+.+.....+.+.+ +.++.+|++|+++.. .+.. .++..+.. ..-++|-+|..
T Consensus 254 l---aG~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~ 324 (758)
T PRK11034 254 L---AGTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTY 324 (758)
T ss_pred h---cccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCCh
Confidence 1 1110 0001122222232333 346789999998632 1222 23333322 22445555544
Q ss_pred hhhhhcc------CCCCCCeeccCCChHHHHHHHHHH
Q 038220 309 KDVAVYA------DPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 309 ~~v~~~~------~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
++...+. ......+.++..+.+++.+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 4332211 112267899999999999998754
No 173
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.0011 Score=68.33 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.++|..|+|||.||..+++. ...+...+++++ ..+++..+....... ......+ +.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~-----~~~~~~~----~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSS-----GKEDENE----IIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcc-----ccccHHH----HHHHhc
Confidence 45889999999999999999994 332333456664 334455554443221 0111122 233344
Q ss_pred cCcEEEEEecCCC--hhhHHH--HHhhCCC-CCCCcEEEEEec
Q 038220 270 ERRFIIVLDDIWE--KEAWDD--LKAVFPD-AKNGSRIIFTTR 307 (866)
Q Consensus 270 ~k~~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivTtR 307 (866)
+-. ||||||+.. ..+|.. +...+.. ...+..+|+||.
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 334 899999943 344432 3222221 124556888886
No 174
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.31 E-value=0.0014 Score=78.75 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998764 235668999999999999998873
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.29 E-value=0.0044 Score=71.48 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=92.8
Q ss_pred CCCeeechhhHHHHHHHH---hcCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMMILGNRV---IHGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l---~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
-.+++|.++.++++.+.+ .... ...+-+.++|++|+|||+||+.+++.. . +-++.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----
Confidence 356888877666555443 3321 124568999999999999999998842 1 223333221
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh------------hh----HHHHHhhCCC--C
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK------------EA----WDDLKAVFPD--A 296 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~----~~~l~~~l~~--~ 296 (866)
++ .....+. ....+...+.......+++|++||++.. .. +..+...+.. .
T Consensus 251 ~f----~~~~~g~--------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 EF----VEMFVGV--------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HH----HHHhhhh--------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 1111010 1123333444444567899999999532 11 2223322221 2
Q ss_pred CCCcEEEEEecchhhhh-c-cC--CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC
Q 038220 297 KNGSRIIFTTRFKDVAV-Y-AD--PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG 367 (866)
Q Consensus 297 ~~gs~iivTtR~~~v~~-~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 367 (866)
..+-.||.||...+... . .. .-...+.++..+.++-.+++..++.... .. .......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LS--PDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cc--hhHHHHHHHhcCCC
Confidence 33455666665433221 1 11 1125678888888888888877764311 11 12234567777766
No 176
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.29 E-value=0.0039 Score=68.95 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
..-+.|+|+.|+|||+|++.+++. +......+++++. ..+...+...+... . .+.++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~--------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG--------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc--------h----HHHHHHHc
Confidence 356889999999999999999984 3222233555542 33334444433221 1 12233333
Q ss_pred ccCcEEEEEecCCChhh----HHHHHhhCCC-CCCCcEEEEEecch-h--------hhhccCCCCCCeeccCCChHHHHH
Q 038220 269 QERRFIIVLDDIWEKEA----WDDLKAVFPD-AKNGSRIIFTTRFK-D--------VAVYADPGSPPYELCLLNEEDSCE 334 (866)
Q Consensus 269 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~~l~~L~~~~~~~ 334 (866)
. ..-++++||+..... -+.+...+.. ...|..||+||... . +...+..+ ..+++.+++.++-..
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~r~~ 278 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEGLRS 278 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHHHHH
Confidence 3 345888899865421 1222222210 11345688888542 1 11222222 678899999999999
Q ss_pred HHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 335 LLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 335 Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
++.+++...+- ..+ .++..-|+..+.|.
T Consensus 279 iL~~k~~~~~~---~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSI---RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCC---CCC---HHHHHHHHHhcCCC
Confidence 99887754321 222 45556666666644
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.29 E-value=0.00099 Score=80.19 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=84.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcc---ccCCC-CceEEEEeCCCCCHHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSD---VKKHF-DCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... +..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~---- 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL---- 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----
Confidence 468999999999999998754 23456999999999999998887311 11111 234443 1 111111
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh----------hhHHHHHhhCCCCCCCcEEEEEecchh
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK----------EAWDDLKAVFPDAKNGSRIIFTTRFKD 310 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (866)
.+. . . ..+.++....+.+.+ ..++.+|++|+++.. +.-+.++..+.. ..-++|-+|..+.
T Consensus 248 ---ag~-~--~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~e 318 (821)
T CHL00095 248 ---AGT-K--Y-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDE 318 (821)
T ss_pred ---ccC-C--C-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHH
Confidence 111 0 0 011222222222222 356899999998522 112233333332 1244555555444
Q ss_pred hhh------ccCCCCCCeeccCCChHHHHHHHHH
Q 038220 311 VAV------YADPGSPPYELCLLNEEDSCELLFK 338 (866)
Q Consensus 311 v~~------~~~~~~~~~~l~~L~~~~~~~Lf~~ 338 (866)
... .......++.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 322 1222235678888888888888764
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=7.2e-05 Score=86.66 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=39.8
Q ss_pred ccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCC-CCccccCCCCCC
Q 038220 682 LLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTE-DPLKELEKLPNL 760 (866)
Q Consensus 682 l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L 760 (866)
+|+|++|.+.+-..... .+.....++++|.+|++++..+. .+ ..++.+++|+.|.+.+-.+.. ..+..|-+|.+|
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecch-hHHHHhhccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 46666666665443222 23344445566666666553211 11 223345555555555543322 233344556666
Q ss_pred CeeEEecc
Q 038220 761 RVLKLKQS 768 (866)
Q Consensus 761 ~~L~L~~~ 768 (866)
+.|++|..
T Consensus 223 ~vLDIS~~ 230 (699)
T KOG3665|consen 223 RVLDISRD 230 (699)
T ss_pred Ceeecccc
Confidence 66666543
No 179
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.019 Score=56.46 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=102.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeC-CCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVS-QEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
.+++.++|.-|+|||++++.+... ..+ +.++-+.+. +..+...+...++..+... ..........+..+.+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHHHH
Confidence 469999999999999999955442 111 112223333 4456677777787777663 1111111222333334333
Q ss_pred h-ccCc-EEEEEecCCCh--hhHHHHHhhCC---CCCCCcEEEEEecch-------hhhhccCCCCCC-eeccCCChHHH
Q 038220 268 L-QERR-FIIVLDDIWEK--EAWDDLKAVFP---DAKNGSRIIFTTRFK-------DVAVYADPGSPP-YELCLLNEEDS 332 (866)
Q Consensus 268 L-~~k~-~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~iivTtR~~-------~v~~~~~~~~~~-~~l~~L~~~~~ 332 (866)
. ++++ ..+++||..+. +..+.++.... +....-+|+..-..+ .+.......... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 3566 89999998754 34555544332 111112233322111 011111111134 89999999998
Q ss_pred HHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhh
Q 038220 333 CELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGL 378 (866)
Q Consensus 333 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~ 378 (866)
..++..+..+...+ .+-.-.+....|.....|.|.+|..++..
T Consensus 206 ~~yl~~~Le~a~~~---~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLP---EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCC---cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 88888776654322 22122456678999999999999876643
No 180
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.0031 Score=62.61 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=29.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV 227 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v 227 (866)
-.++|+|..|+|||||+..+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36789999999999999999874 6778877766644
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.19 E-value=0.00019 Score=68.13 Aligned_cols=35 Identities=34% Similarity=0.661 Sum_probs=27.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcccc-CCCCceEE
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVK-KHFDCCAW 224 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 224 (866)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999854333 45676776
No 182
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.11 E-value=3.7e-05 Score=87.93 Aligned_cols=165 Identities=25% Similarity=0.161 Sum_probs=80.5
Q ss_pred CCCCceecceeecC--CcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCC
Q 038220 658 LPNLQTLLGICICE--TSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPN 735 (866)
Q Consensus 658 l~~L~~L~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 735 (866)
+++|++|.+..|.. ...+......+++|++|++++|.......+.....++++|+.|.+.... .++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----------~c~~ 336 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----------GCPS 336 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----------CCcc
Confidence 55566665443431 1333343455777888888887765555555556667777776554311 0344
Q ss_pred ceEEEEEeecCCC---CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCccccccee
Q 038220 736 LTELSLQFCFLTE---DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRL 812 (866)
Q Consensus 736 L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 812 (866)
++.+.+..+.... ...-.+..+++|+.+.|..+............++|+|. ..+.. ....++.|+.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~L 406 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRVL 406 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccceE
Confidence 5555555443211 11123456777777777665532212122334444441 11111 11122236666
Q ss_pred eEeecccCCccCC-CccC-CCCCCEEEEeCCCH
Q 038220 813 EIIECMRLKIVPS-GLWP-LTTLSNLKLGYMPF 843 (866)
Q Consensus 813 ~l~~c~~l~~lp~-~l~~-l~~L~~L~l~~~~~ 843 (866)
++..|...+.--. .... +.++..+++.+|+.
T Consensus 407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ecccCccccccchHHHhhhhhccccCCccCccc
Confidence 6666665442100 0001 55566666666653
No 183
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.10 E-value=0.0026 Score=59.18 Aligned_cols=60 Identities=8% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhccCcEEEEEec----CCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccC
Q 038220 257 MEDMKEELSNFLQERRFIIVLDD----IWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYAD 316 (866)
Q Consensus 257 ~~~~~~~l~~~L~~k~~LlVlDd----v~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 316 (866)
-++..-.+.+.+-+++-+++-|. ++....|+-+.-+-.-+..|..|+|+|-+......+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34445567777788999999995 5445567654433333567899999999988766553
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.09 E-value=0.0093 Score=67.78 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=91.0
Q ss_pred CCCCCeeechhhHHHHHHHHh---c-------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVI---H-------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..-.+++|.++.++++.+.+. . +....+-+.++|++|+|||++|+.+++. .... ++.++..
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~~-- 122 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISGS-- 122 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccHH--
Confidence 344578898877666555443 2 1122456889999999999999999984 2212 2222211
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh------------hhHH----HHHhhCC--
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK------------EAWD----DLKAVFP-- 294 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~----~l~~~l~-- 294 (866)
++ .....+. ....+...+.......+.+|+|||++.. ..+. .+...+.
T Consensus 123 --~~----~~~~~g~--------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 123 --DF----VEMFVGV--------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred --HH----HHHHhcc--------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 11 1111111 1123333334433456789999998532 1111 2222221
Q ss_pred CCCCCcEEEEEecchh-hhhcc-C--CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 295 DAKNGSRIIFTTRFKD-VAVYA-D--PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 295 ~~~~gs~iivTtR~~~-v~~~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
....+-.||.||.... +...+ . .-...+.+...+.++-.++|......... .. .....++++.+.|.
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~---~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL---AP----DVDLKAVARRTPGF 259 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC---Cc----chhHHHHHHhCCCC
Confidence 1223444555664432 11111 1 11256788888888888888776543221 11 11234677777663
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.08 E-value=0.0001 Score=64.26 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=39.5
Q ss_pred CeeEEEEecCCccccCccccc-CCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccC
Q 038220 566 KLLQVLDLEGVYMALIDSSIG-NLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSE 644 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 644 (866)
..|...+|++|.++.+|+.+. +++.+..|++.+|.|..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 344445555555555544432 2234555555555555555555555555555555555555555444455555554444
Q ss_pred c
Q 038220 645 F 645 (866)
Q Consensus 645 ~ 645 (866)
+
T Consensus 133 n 133 (177)
T KOG4579|consen 133 N 133 (177)
T ss_pred C
Confidence 3
No 186
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0085 Score=64.29 Aligned_cols=145 Identities=21% Similarity=0.160 Sum_probs=84.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHH---
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEEL--- 264 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l--- 264 (866)
....+.+.|++|+|||+||..++.+ ..|.++--++-. +....+...-...+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe----------------------~miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPE----------------------DMIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChH----------------------HccCccHHHHHHHHHHH
Confidence 4677889999999999999999873 567654333211 11111222223333
Q ss_pred -HHHhccCcEEEEEecCCChhhHHH------------HHhhCCC-CCCCcEE--EEEecchhhhhccCCC---CCCeecc
Q 038220 265 -SNFLQERRFIIVLDDIWEKEAWDD------------LKAVFPD-AKNGSRI--IFTTRFKDVAVYADPG---SPPYELC 325 (866)
Q Consensus 265 -~~~L~~k~~LlVlDdv~~~~~~~~------------l~~~l~~-~~~gs~i--ivTtR~~~v~~~~~~~---~~~~~l~ 325 (866)
....+..--.||+||+...-+|-. +...+.. ...|-|. +-||....|...++-. ...+.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 333445667899999976655533 2223332 2234444 3355556666655422 2678899
Q ss_pred CCCh-HHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc
Q 038220 326 LLNE-EDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKC 365 (866)
Q Consensus 326 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 365 (866)
.++. ++..+.+...-. ..+.+.+.++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~-------fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI-------FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC-------CCcchhHHHHHHHhccc
Confidence 9887 677777665431 22334456667776666
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.022 Score=59.83 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=62.9
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCC
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNA 346 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 346 (866)
+++-++|+|+++.. ..-+.+...+-....++.+|++|.+. .+..-+......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 45678999999765 34556666666666677777777644 3332222223678899999999988886531 1
Q ss_pred CCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 347 MSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
+ ...+..++..++|.|+.+..+.
T Consensus 187 ----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 ----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2346678999999998665443
No 188
>PRK08181 transposase; Validated
Probab=97.07 E-value=0.0028 Score=64.75 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=52.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.-+.|+|++|+|||.||..+.+. .......++|+.+ .+++..+...... ........ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~~--------~~~~~~l~----~l- 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARRE--------LQLESAIA----KL- 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHhC--------CcHHHHHH----HH-
Confidence 35899999999999999999873 2222233556543 3444444322111 11222222 22
Q ss_pred cCcEEEEEecCCCh--hhH--HHHHhhCCCCCCCcEEEEEecc
Q 038220 270 ERRFIIVLDDIWEK--EAW--DDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~--~~l~~~l~~~~~gs~iivTtR~ 308 (866)
.+.=|||+||+... ..| ..+...+.....+..+||||..
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 24459999999643 122 2233333211112348888863
No 189
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.016 Score=61.89 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=88.3
Q ss_pred Ceee-chhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 167 DIVG-LGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 167 ~~vG-r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
.++| -+.-.+.+...+..+. -.....++|+.|+||||+|+.+.+..--....... .+... ..-+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 3556 5556666766665543 24567899999999999998886531100100000 00000 00000000000
Q ss_pred cC---CCCccccCCHHHHHHHHHHH----hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhcc
Q 038220 246 GL---GKADLDKMHMEDMKEELSNF----LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYA 315 (866)
Q Consensus 246 ~~---~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~ 315 (866)
.. -.++......+++.+.+... ..+.+-++|+|+++.. ...+.+...+-....++.+|++|.+.. +..-+
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 00 00000112334444333222 1245667999998754 356677777777667777887776543 32222
Q ss_pred CCCCCCeeccCCChHHHHHHHHH
Q 038220 316 DPGSPPYELCLLNEEDSCELLFK 338 (866)
Q Consensus 316 ~~~~~~~~l~~L~~~~~~~Lf~~ 338 (866)
......+++.+++.++..+.+.+
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 23347899999999999888864
No 190
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.01 E-value=0.042 Score=65.99 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=38.3
Q ss_pred CCCeeechhhHHHHHHHHhc----CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIH----GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+++|.++-+++|.+++.. +....+++.++|++|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34688999999999887642 2223458999999999999999999983
No 191
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=5.8e-05 Score=86.34 Aligned_cols=172 Identities=21% Similarity=0.087 Sum_probs=93.8
Q ss_pred CCCCCceecceeecC-C-cchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccc-ccccCCccCCC
Q 038220 657 SLPNLQTLLGICICE-T-SCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITY-TVDLSDVQNFP 733 (866)
Q Consensus 657 ~l~~L~~L~~~~~~~-~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~-~~~l~~~~~~~ 733 (866)
.+.+|+.|++..+.. . ..+......+++|+.|.+.+|...+...+......+++|++|+++++..+ ...+......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 345555665555531 2 22333122378899998777765566777777778888999988875432 22233334445
Q ss_pred CCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCC--CeEEECCCCCccccEEEeecCCCCcceEEccCcccccce
Q 038220 734 PNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLG--KEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRR 811 (866)
Q Consensus 734 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~ 811 (866)
++|+.|.+..+. .++.++.+.+....... .........+++|+.+.+..+. ..... ..
T Consensus 321 ~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~---------~~ 380 (482)
T KOG1947|consen 321 PNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG---------LE 380 (482)
T ss_pred cchhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc---------hH
Confidence 666665443332 14556666554332211 1222234567777777777665 22111 14
Q ss_pred eeEeecccC-CccCCCccCCCCCCEEEEeCCCHHHHHH
Q 038220 812 LEIIECMRL-KIVPSGLWPLTTLSNLKLGYMPFDFDLM 848 (866)
Q Consensus 812 L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 848 (866)
+.+.+|+.+ ..+......+.+|+.|++++|.......
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 555666655 2222223334448999999988544333
No 192
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.023 Score=60.94 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=90.3
Q ss_pred CCCeeechhhHH-HHHHHHhc-CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMM-ILGNRVIH-GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~-~l~~~l~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
+.-++|-..... .+...+.+ .+.....+.|+|..|.|||.|++.+.+ ....+......++++. +..+.+++.
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~ 160 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVK 160 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHH
Confidence 445566544433 22222222 233467899999999999999999999 4444444333333332 333344443
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEecchh-------
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAW-DDLKAVFPD-AKNGSRIIFTTRFKD------- 310 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~iivTtR~~~------- 310 (866)
.+... -.+..++.. .-=++++||++.. +.| +.+...|.. ...|..||+|++...
T Consensus 161 a~~~~------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 161 ALRDN------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHhh------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 33221 123344444 3348889998753 222 223333321 123347899885332
Q ss_pred --hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCC
Q 038220 311 --VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGG 344 (866)
Q Consensus 311 --v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 344 (866)
.......+ -++++.+.+.+....++.+++...+
T Consensus 227 ~rL~SR~~~G-l~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWG-LVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhce-eEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 22233333 6799999999999999998775544
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.99 E-value=0.024 Score=67.56 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
..++|.+..++.+...+... .....++.++|+.|+|||+||+.++.. . +...+.+++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 46899999999888887642 112457899999999999999999873 2 23345555554322111
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhcc-CcEEEEEecCCCh--hhHHHHHhhCC
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIWEK--EAWDDLKAVFP 294 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~--~~~~~l~~~l~ 294 (866)
...+.+............. +.+.++. ..-+++||+++.. +.++.+...+.
T Consensus 526 --~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1112221111001011122 2333333 4459999999754 45666666554
No 194
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.95 E-value=0.028 Score=57.87 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=35.1
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
-++++..++..+. -+.|.|++|+|||++|+.+.. .... ....+++....+..+++
T Consensus 10 l~~~~l~~l~~g~----~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSGY----PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcCC----eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3445555555443 566899999999999999986 2221 24555666555544443
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.043 Score=57.75 Aligned_cols=174 Identities=11% Similarity=0.107 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC------c--eEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD------C--CAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~------~--~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
-+.+...+..+. -.....++|+.|+||+++|+.+..-.--..... | +-++..+..+|...+
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---------- 79 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---------- 79 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE----------
Confidence 345555555543 235677899999999999988875210000000 0 000000111110000
Q ss_pred CCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCC
Q 038220 247 LGKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPG 318 (866)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~ 318 (866)
...+......+++.+. .+.+ .+++-++|+|+++.. .....+...+-....++.+|++|.+. .+..-+...
T Consensus 80 -~p~~~~~I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 -EPIDNKDIGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred -ccccCCCCCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0000112234444432 2332 256678889999865 46677888887777778788877654 333222222
Q ss_pred CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 319 SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
...+.+.+++.++..+.+...... + ...+...+..++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~~--------~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSSA--------E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhcc--------C---hHHHHHHHHHcCCCHHHH
Confidence 378999999999999888765311 1 123556788899999643
No 196
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.94 E-value=9.1e-05 Score=64.55 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=71.4
Q ss_pred ceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCc
Q 038220 546 VRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTL 623 (866)
Q Consensus 546 lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~ 623 (866)
+....+.++ ..+.+.+-.+++-++.|++++|.+..+|..+..++.||.|+++.|.+...|..|-.|.+|-.|+..++.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 334444444 234445566778899999999999999999999999999999999999999999899999999999998
Q ss_pred cccccccc
Q 038220 624 VDPIPLVI 631 (866)
Q Consensus 624 ~~~lp~~i 631 (866)
...+|.++
T Consensus 135 ~~eid~dl 142 (177)
T KOG4579|consen 135 RAEIDVDL 142 (177)
T ss_pred cccCcHHH
Confidence 88888764
No 197
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.94 E-value=0.0058 Score=69.91 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCCCCeeechhhHHHHHHHHhcCC---CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGG---LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..-.+++|-++.++++..++.... ...+++.|+|++|+||||+++.++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445689999999999999987632 22467999999999999999999974
No 198
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0021 Score=61.40 Aligned_cols=66 Identities=32% Similarity=0.477 Sum_probs=39.9
Q ss_pred EEEEEccCCChHHHHHHHHhcCccc-cCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDV-KKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.|.|+|++|+||||||+.+.....+ .-+.|...|-... ...+.++....+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~------------------------~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW------------------------QERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc------------------------ccCCHHHHHHHHHHHHh
Confidence 4889999999999999998863211 1233444442111 11233455556666666
Q ss_pred cCcEEEEEecCCC
Q 038220 270 ERRFIIVLDDIWE 282 (866)
Q Consensus 270 ~k~~LlVlDdv~~ 282 (866)
+.+ .|+|+...
T Consensus 58 ~~~--wIidg~~~ 68 (171)
T PRK07261 58 KHD--WIIDGNYS 68 (171)
T ss_pred CCC--EEEcCcch
Confidence 655 67787743
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.90 E-value=0.041 Score=66.69 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=67.0
Q ss_pred CCeeechhhHHHHHHHHhcC------C-CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG------G-LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~------~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
..++|.+..++.+.+.+... . ....++.++|+.|+|||++|+.+... ....-...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999988652 1 12457889999999999999999973 222122344445544222111
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCC
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFP 294 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~ 294 (866)
...+.+....-........+...++. ....+|+||++... +.+..+...+.
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 11222211110010011223333322 23458999999754 46677776664
No 200
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.0037 Score=63.11 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=44.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
...+.|+|.+|+|||+||..+++. .......++++++. +++..+-...... ..... +.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~----~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG-------QSGEK----FLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc-------chHHH----HHHHh
Confidence 357899999999999999999984 33333345666543 3444443332111 01111 22222
Q ss_pred ccCcEEEEEecCCC
Q 038220 269 QERRFIIVLDDIWE 282 (866)
Q Consensus 269 ~~k~~LlVlDdv~~ 282 (866)
.+--|||+||+..
T Consensus 162 -~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 -CKVDLLVLDEIGI 174 (248)
T ss_pred -cCCCEEEEcCCCC
Confidence 3667899999943
No 201
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.87 E-value=0.038 Score=65.73 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=39.2
Q ss_pred CCCeeechhhHHHHHHHHhc----CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 165 EEDIVGLGEDMMILGNRVIH----GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+.+.+|.++-+++|++++.. +.....++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998874 122345899999999999999999997
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.0053 Score=61.80 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCcccc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDK 254 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~ 254 (866)
+..+.++...-......+.++|.+|+|||+||..+++. ....-..+++++ ..+++..+-...... .
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~------~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNS------E 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhc------c
Confidence 34444444332222457899999999999999999984 222223455553 344444443332110 1
Q ss_pred CCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHH--HHhhCCC-CCCCcEEEEEec
Q 038220 255 MHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDD--LKAVFPD-AKNGSRIIFTTR 307 (866)
Q Consensus 255 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~--l~~~l~~-~~~gs~iivTtR 307 (866)
.... .+.+.+. +.=+||+||+... ..|.. +...+.. ....-.+||||.
T Consensus 151 ~~~~----~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 151 TSEE----QLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred ccHH----HHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 1112 2223344 4458888999643 34542 2222221 111234777775
No 203
>PRK06526 transposase; Provisional
Probab=96.84 E-value=0.002 Score=65.50 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.-+.|+|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999874
No 204
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.83 E-value=0.00072 Score=65.52 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=61.7
Q ss_pred echhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC--C-------HHH----H
Q 038220 170 GLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY--R-------KWE----I 236 (866)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~-------~~~----~ 236 (866)
.+..+....++.|.. ..++.+.|++|.|||.||.....+.-..+.|+.++++.-.-.. + ..+ .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 355566677777773 3499999999999999998888654445788877777432110 0 000 0
Q ss_pred HHHHHHHHhcCCCCccccCCHHHHHHH------HHHHhccC---cEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEec
Q 038220 237 LQDLCKKVLGLGKADLDKMHMEDMKEE------LSNFLQER---RFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTR 307 (866)
Q Consensus 237 ~~~i~~~~~~~~~~~~~~~~~~~~~~~------l~~~L~~k---~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR 307 (866)
+.-+...+... ......+.+.+. -..+++++ ..+||+|++++... .+++..+...+.+||+|++--
T Consensus 80 ~~p~~d~l~~~----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~-~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 80 LRPIYDALEEL----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP-EELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp THHHHHHHTTT----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H-HHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHH----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH-HHHHHHHcccCCCcEEEEecC
Confidence 11111111111 000111111110 01223443 46999999976532 233334444578999999886
Q ss_pred chhh
Q 038220 308 FKDV 311 (866)
Q Consensus 308 ~~~v 311 (866)
..++
T Consensus 155 ~~Q~ 158 (205)
T PF02562_consen 155 PSQI 158 (205)
T ss_dssp ----
T ss_pred ceee
Confidence 4443
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.82 E-value=0.0009 Score=62.71 Aligned_cols=102 Identities=22% Similarity=0.129 Sum_probs=55.5
Q ss_pred CceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccc-ccccccEEeccCccccccC--CCCCCCCCCCceecc
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIW-KMQQLKHVYFSEFREMVVN--PPADASLPNLQTLLG 666 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~~ 666 (866)
+...+||++|++..++ .+..+..|.+|.+.+|.+..+-..+. .+++|..|.+.+|... .+ ...+..|+.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 4566777777766554 34466777777777777766655554 3456777777766543 11 112344555555555
Q ss_pred eeecCC---cchhHhhccccCCCeEEEEcc
Q 038220 667 ICICET---SCVEQGLDKLLNLRELGLHGD 693 (866)
Q Consensus 667 ~~~~~~---~~~~~~l~~l~~L~~L~l~~~ 693 (866)
.++... ..-...+..+++|+.|++.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 444321 111112444555555555544
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.026 Score=61.86 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCeeechhhHHHHHHHHhcCC----------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGG----------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
-.++=|.+..+.++.+++..-. ...+-|.+||++|.|||.||+.+.+. .. +-++.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecch----
Confidence 3567789998888888776421 13577899999999999999999984 22 233444432
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhH----------HHHHhhCC---CC-C
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAW----------DDLKAVFP---DA-K 297 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~----------~~l~~~l~---~~-~ 297 (866)
+|+..+.+ .+.+.+.+...+.-+.-++++++|+++-. ..| .++...+. .. .
T Consensus 258 ----eivSGvSG--------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 ----EIVSGVSG--------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ----hhhcccCc--------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 12222222 13345555555555678999999999642 111 22332222 11 1
Q ss_pred CCcEEEE---Eecchhhhh---ccCCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 298 NGSRIIF---TTRFKDVAV---YADPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 298 ~gs~iiv---TtR~~~v~~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
.|-.|+| |+|...+-. ..+.....+.+..-++..-.+++...+-+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 1222333 445443322 22222356777777776666676665543
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.78 E-value=0.0061 Score=73.14 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
...++|.+..++.+.+.+... .....++.++|+.|+|||.+|+.+... .-......+-++++......
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH--- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh---
Confidence 357899999999999888531 223458899999999999999988763 21111222333333221110
Q ss_pred HHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCC
Q 038220 238 QDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPD 295 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~ 295 (866)
-...+.+.............+.+.+++ ...-+|+||++... +.++.+...+.+
T Consensus 640 --~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 640 --TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDK 694 (852)
T ss_pred --hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhc
Confidence 111122211111111111223333332 45679999999743 456666665543
No 208
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.77 E-value=0.0036 Score=63.47 Aligned_cols=91 Identities=15% Similarity=0.301 Sum_probs=53.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCC-CceEEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCHH-----
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHF-DCCAWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHME----- 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~----- 258 (866)
.-++|.|..|+|||||++.+++. ++.+| +.++++.+.+... ..++..++...-..... ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999984 55455 3567777776543 33444444332111000 000111111
Q ss_pred HHHHHHHHHh--c-cCcEEEEEecCCC
Q 038220 259 DMKEELSNFL--Q-ERRFIIVLDDIWE 282 (866)
Q Consensus 259 ~~~~~l~~~L--~-~k~~LlVlDdv~~ 282 (866)
...-.+.+++ + ++.+|+++||+..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1222345555 3 8899999999843
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.75 E-value=0.0063 Score=64.28 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=62.2
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCC-CHHHHHHHHHHHHhcCC--C
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEY-RKWEILQDLCKKVLGLG--K 249 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~i~~~~~~~~--~ 249 (866)
-..++++.+..-..+ ..+.|+|..|+|||||++.+.+.. ..++-+. ++|+.+.+.. .+.++.+.+...+.... .
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 344577777753322 356899999999999999988731 1223344 4777777654 45666666666544421 1
Q ss_pred CccccCCHHHHHHHHHHHh--ccCcEEEEEecCC
Q 038220 250 ADLDKMHMEDMKEELSNFL--QERRFIIVLDDIW 281 (866)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~ 281 (866)
+.............+.+++ ++++.+||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111111111122222223 4789999999994
No 210
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.74 E-value=0.02 Score=58.26 Aligned_cols=173 Identities=15% Similarity=0.103 Sum_probs=95.3
Q ss_pred CCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK-WEILQDLCK 242 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~ 242 (866)
..++|-.++..++-.++... -++.--+.|+|+.|.|||+|...+..| .+..=+..+-|........ +-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 46789888888888888652 112346779999999999999888875 2222223344444444332 234555665
Q ss_pred HHhcC-CCCccccCCHHHHHHHHHHHhc------cCcEEEEEecCCCh------hh-HHHHHhhCCCCCCCcEEEEEecc
Q 038220 243 KVLGL-GKADLDKMHMEDMKEELSNFLQ------ERRFIIVLDDIWEK------EA-WDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 243 ~~~~~-~~~~~~~~~~~~~~~~l~~~L~------~k~~LlVlDdv~~~------~~-~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
++... ........+..+....+-..|+ +-++++|+|.++-- .- +.-+...-....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 55442 0111112223333444444443 23688889887532 11 11111111123455667788885
Q ss_pred hhhh---hccCC---CCCCeeccCCChHHHHHHHHHHH
Q 038220 309 KDVA---VYADP---GSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 309 ~~v~---~~~~~---~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
.... ..++. ...++-++.++.++..+++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4321 11111 11356667788888888887765
No 211
>PHA00729 NTP-binding motif containing protein
Probab=96.67 E-value=0.0094 Score=58.52 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=25.0
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+++.+...+ ...|.|.|.+|+||||||..+.+.
T Consensus 8 ~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444433 457899999999999999999873
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.041 Score=61.52 Aligned_cols=98 Identities=23% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
+.+++--....++..+.....--...-|.|.|..|+|||+||+.+++... +.+.-++.+++++.-.... +..|-
T Consensus 407 e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~iQ--- 480 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKIQ--- 480 (952)
T ss_pred CCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHHH---
Confidence 34555544444444444433333456899999999999999999998633 5566667777776531110 11111
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIW 281 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~ 281 (866)
..+.......+.-.+-+|||||++
T Consensus 481 -------------k~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 481 -------------KFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred -------------HHHHHHHHHHHhhCCcEEEEcchh
Confidence 111223344455689999999986
No 213
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.0067 Score=61.18 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 038220 181 RVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWE 235 (866)
Q Consensus 181 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 235 (866)
.|..+=..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...
T Consensus 15 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 15 LLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 33333234579999999999999999998874 22334568999887 555544
No 214
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.068 Score=56.11 Aligned_cols=174 Identities=9% Similarity=0.043 Sum_probs=98.6
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCc--
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKAD-- 251 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~-- 251 (866)
..+++...+..+. -...+.++|+.|+||+++|..+..-.--.+.-+. .++.. ... ..+.....++
T Consensus 11 ~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C-~sC-------~~~~~g~HPD~~ 77 (319)
T PRK06090 11 VWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC-HSC-------ELMQSGNHPDLH 77 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC-HHH-------HHHHcCCCCCEE
Confidence 3445555554443 2457889999999999999888752100000000 01110 000 0000000000
Q ss_pred -------cccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccC
Q 038220 252 -------LDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYAD 316 (866)
Q Consensus 252 -------~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~ 316 (866)
......+++.+ +.+.+ .++.-++|+|+++.. ...+.+...+-....++.+|++|.+. .+..-+.
T Consensus 78 ~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 78 VIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred EEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 11233444443 33333 244568999999865 46777888887767777777777654 3332222
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
.....+.+.+++.++..+.+.... . . ....++..++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~----~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG---I----T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC---C----c-------hHHHHHHHcCCCHHHHHHH
Confidence 333788999999999998885531 0 1 2346789999999876554
No 215
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.64 E-value=0.0053 Score=61.10 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=38.4
Q ss_pred HhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 182 VIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 182 l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
|..+=+.-+++.|+|.+|+|||++|.++... ....-..++|++... ++...+.+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 3333334579999999999999999998863 223346789999876 66555443
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.03 Score=59.52 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=99.0
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC---c-----eEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD---C-----CAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
.-+++...+..+. -...+.+.|+.|+||+|+|..+..-.--...-+ | +-++.....+|...+ .
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 3455666665543 235778999999999999988765210000000 0 001111111110000 0
Q ss_pred cCCCCccccCCHHHHHHHHHHHh----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCC
Q 038220 246 GLGKADLDKMHMEDMKEELSNFL----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPG 318 (866)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~ 318 (866)
. +........+++.+.....- .+++-++|+|+++.. ..-+.+...+-....++.+|++|.+.+ +..-+...
T Consensus 81 p--~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 P--EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred c--ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 0 00001233445444332221 256778999999865 456777777777677787777776543 33222222
Q ss_pred CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 319 SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
...+.+.+++.++..+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~-~-------~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREV-T-------MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHcc-C-------CC---HHHHHHHHHHcCCCHHHHH
Confidence 3678999999999888775532 1 11 2346778999999996443
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=96.63 E-value=0.0057 Score=62.69 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+.|+|++|+|||+||..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3677999999999999999976
No 218
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.62 E-value=0.0073 Score=63.29 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=65.2
Q ss_pred echhhHHHHHHHHhcCC--CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 038220 170 GLGEDMMILGNRVIHGG--LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL 247 (866)
Q Consensus 170 Gr~~~~~~l~~~l~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 247 (866)
+|........+++..-. ...+-+.|+|..|+|||.||..+++.. .+..+ .+.+++++ +++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~~~g~-~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-AKKGV-SSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-HHcCC-CEEEEEHH------HHHHHHHHHHhcC
Confidence 44444555555655321 134679999999999999999999852 22233 35666543 4445554433221
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHH--HHhhC-CCC-CCCcEEEEEec
Q 038220 248 GKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDD--LKAVF-PDA-KNGSRIIFTTR 307 (866)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivTtR 307 (866)
... +.+.. + .+-=||||||+... ..|.. +...+ ... ..+-.+|+||.
T Consensus 207 --------~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 111 22222 2 35678999999643 45642 43332 211 23455788886
No 219
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.61 E-value=0.019 Score=68.74 Aligned_cols=49 Identities=31% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.-.++.|.++.++++.+.+.-. -...+-+.++|++|+||||||+.+++.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3346889999998887776421 122467889999999999999999983
No 220
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.60 E-value=0.014 Score=70.34 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
...++|.+..++.+...+... .....++.++|+.|+|||++|+.+.+. ....-...+.+.++.-.. .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h---
Confidence 346899999999888888642 112357889999999999999999873 211112234444443211 1
Q ss_pred HHHHHHHhcCCCCccccCCHHHHHHHHHHHhcc-CcEEEEEecCCCh--hhHHHHHhhCC
Q 038220 238 QDLCKKVLGLGKADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIWEK--EAWDDLKAVFP 294 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~--~~~~~l~~~l~ 294 (866)
.....+.+. .+.....+. ...+.+.++. ..-+|+|||+... +.+..+...+.
T Consensus 641 -~~~~~LiG~-~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 -HSVSRLVGA-PPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred -hhHHHHhCC-CCcccccch---hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 112222222 111111111 1122233322 3368999999743 56666666654
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.59 E-value=0.011 Score=55.98 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=29.4
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
++.|+|.+|+||||++..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999874 222334577887765543
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.59 E-value=0.0016 Score=68.32 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=40.2
Q ss_pred CeeechhhHHHHHHHHhcC----CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 167 DIVGLGEDMMILGNRVIHG----GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999763 234689999999999999999999874
No 223
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.54 E-value=0.018 Score=69.45 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=65.6
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
..++|.+..++.+...+... .....++.++|+.|+|||+||+.+.+. .-..-...+-++++.-.....+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH--
Confidence 56899999999998887531 112356778999999999999998862 2111122344444432221111
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhccCc-EEEEEecCCCh--hhHHHHHhhCCC
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQERR-FIIVLDDIWEK--EAWDDLKAVFPD 295 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~--~~~~~l~~~l~~ 295 (866)
..+.+....-....... .+.+.+..++ -+++||+++.. +.++.+...+..
T Consensus 585 ---~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ---HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 11112111000111112 2334444454 58889999754 456676666554
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.0074 Score=62.00 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=27.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCC-CCceEEEEe
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKH-FDCCAWAYV 227 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~v 227 (866)
...+.++|..|+|||+||..+++. +... -..++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457899999999999999999984 3332 334566654
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.52 E-value=0.064 Score=64.23 Aligned_cols=154 Identities=21% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 165 EEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
-.++.|.+..++.+.+.+.- +-...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH---
Confidence 34678888887777766542 1122456889999999999999999984 22222 222211
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--------------hhHHHHHhhCCC--CC
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--------------EAWDDLKAVFPD--AK 297 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~--~~ 297 (866)
+++....+. ....+.......-...+.+|+||+++.. .....+...+.. ..
T Consensus 522 -----~l~~~~vGe--------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -----EILSKWVGE--------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -----HHhhcccCc--------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111111 1122222233333456899999998532 012223333332 22
Q ss_pred CCcEEEEEecchhhhh-c-cC--CCCCCeeccCCChHHHHHHHHHHHh
Q 038220 298 NGSRIIFTTRFKDVAV-Y-AD--PGSPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 298 ~gs~iivTtR~~~v~~-~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
.+--||.||...+... . .. .-...+.+...+.++-.++|.....
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 3344555664443221 1 11 1225678888888888888876543
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.51 E-value=0.0018 Score=58.00 Aligned_cols=21 Identities=52% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 227
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.50 E-value=0.0033 Score=59.04 Aligned_cols=11 Identities=45% Similarity=0.507 Sum_probs=4.2
Q ss_pred CCceEEEEEee
Q 038220 734 PNLTELSLQFC 744 (866)
Q Consensus 734 ~~L~~L~L~~~ 744 (866)
++|..|.|.+|
T Consensus 88 p~l~~L~LtnN 98 (233)
T KOG1644|consen 88 PNLKTLILTNN 98 (233)
T ss_pred cccceEEecCc
Confidence 33333333333
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.50 E-value=0.038 Score=54.06 Aligned_cols=157 Identities=19% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCCCeeechhhHHH---HHHHHhcC----CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 038220 163 TSEEDIVGLGEDMMI---LGNRVIHG----GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWE 235 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~---l~~~l~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 235 (866)
..-.++||.++.+.. |.+.|... +-.++-|..+|++|.|||.+|+.+.+. .+-.| +.|.. .+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vka----t~ 186 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVKA----TE 186 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEech----HH
Confidence 444679998887654 66777664 335789999999999999999999994 33222 22211 11
Q ss_pred HHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh----------hhH----HHHHhhCC--CCCC
Q 038220 236 ILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK----------EAW----DDLKAVFP--DAKN 298 (866)
Q Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~----~~l~~~l~--~~~~ 298 (866)
++. +.++ +....++.+.+.. +.-++++.+|.++.. .+. +.+..-+. ..+.
T Consensus 187 liG---ehVG----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 187 LIG---EHVG----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred HHH---HHhh----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 111 1110 1122223333322 346899999988532 111 22222222 2344
Q ss_pred CcEEEEEecchhhhhcc-CC-CCCCeeccCCChHHHHHHHHHHHhCC
Q 038220 299 GSRIIFTTRFKDVAVYA-DP-GSPPYELCLLNEEDSCELLFKKAFAG 343 (866)
Q Consensus 299 gs~iivTtR~~~v~~~~-~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~ 343 (866)
|...|-.|.+.+..... .. ....++...-+.+|-..++...+-.-
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 55555555544432211 11 11446666667788888887776443
No 229
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.49 E-value=0.031 Score=54.90 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccCcEEEEEecCCC---hhhHHHHHhhCC--CCCCCcEEEEEecchhhhhccC
Q 038220 257 MEDMKEELSNFLQERRFIIVLDDIWE---KEAWDDLKAVFP--DAKNGSRIIFTTRFKDVAVYAD 316 (866)
Q Consensus 257 ~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~~~ 316 (866)
-++..-.+.+.|...+-+|+-|+--. .+.-+.+...+. ....|..||+.|-+..+|..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34444467788888999999997431 112223333332 1244778999999999998764
No 230
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.45 E-value=0.1 Score=55.93 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHhcCC-CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 172 GEDMMILGNRVIHGG-LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 172 ~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+.-.+.+.+.+...+ ....+|+|.|.=|+||||+.+++.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567777777653 56789999999999999999999874
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.45 E-value=0.028 Score=53.06 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=69.2
Q ss_pred echhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC------------------CCceEEEEeCCCC
Q 038220 170 GLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH------------------FDCCAWAYVSQEY 231 (866)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~v~~~~ 231 (866)
|-++..+.+...+..+. -...+.++|+.|+||+|+|..+.+..--... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 44556666777766653 2346789999999999999888752111111 111222221111
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-----cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE
Q 038220 232 RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-----ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIF 304 (866)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 304 (866)
......+++. .+.+.+. ++.=++|+||++.. +....++..+-.....+.+|+
T Consensus 79 --------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 79 --------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp --------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred --------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 0022334444 3333332 35678999999865 567788888777778899999
Q ss_pred Eecchh
Q 038220 305 TTRFKD 310 (866)
Q Consensus 305 TtR~~~ 310 (866)
+|++..
T Consensus 138 ~t~~~~ 143 (162)
T PF13177_consen 138 ITNNPS 143 (162)
T ss_dssp EES-GG
T ss_pred EECChH
Confidence 888664
No 232
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.021 Score=56.95 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=67.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcc-----cc------CCC---CceEEEEeCCCCC-----------------------
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSD-----VK------KHF---DCCAWAYVSQEYR----------------------- 232 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~v~~~~~----------------------- 232 (866)
..++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.=...++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5999999999999999999987211 00 001 1345543111111
Q ss_pred -----HHHHHHHHHHHHhcC--CCCccccCCHHHHHH-HHHHHhccCcEEEEEecCCC------hhhHHHHHhhCCCCCC
Q 038220 233 -----KWEILQDLCKKVLGL--GKADLDKMHMEDMKE-ELSNFLQERRFIIVLDDIWE------KEAWDDLKAVFPDAKN 298 (866)
Q Consensus 233 -----~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~l~~~~~ 298 (866)
.++...+.++.++.. ........+-.+.++ .+.+.|.+++=|++||.--. ....-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 123344444444432 111233334444444 56777889999999997432 22333444444433
Q ss_pred CcEEEEEecchhh
Q 038220 299 GSRIIFTTRFKDV 311 (866)
Q Consensus 299 gs~iivTtR~~~v 311 (866)
|..|+++|-+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 7788888876543
No 233
>PTZ00494 tuzin-like protein; Provisional
Probab=96.44 E-value=0.77 Score=49.17 Aligned_cols=167 Identities=7% Similarity=0.034 Sum_probs=97.7
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
.....+|.|+++-..+-+.|..- ...++++.+.|.-|.||++|.+.....+. -..++|.|... ++.++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHH
Confidence 44567889988877777777653 34689999999999999999999887422 23577777664 34577788
Q ss_pred HHHhcCCCCccccCCHHHHHHH---HHHHhccCcEEEEEec--CCCh-hhHHHHHhhCCCCCCCcEEEEEecchhhhh--
Q 038220 242 KKVLGLGKADLDKMHMEDMKEE---LSNFLQERRFIIVLDD--IWEK-EAWDDLKAVFPDAKNGSRIIFTTRFKDVAV-- 313 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~---l~~~L~~k~~LlVlDd--v~~~-~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-- 313 (866)
+.++....+... .-++-+.+. -.....++.-+||+-= -.+. ..+.+.. .|.....-+.|++----+....
T Consensus 440 KALgV~nve~CG-DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 440 RALGVSNVEVCG-DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHhCCCChhhhc-cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhh
Confidence 877765211111 011112222 2222346666666643 2222 1233322 2333344566776443333211
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHH
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
..-+.-..|.+..++.++|.++..+.
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhcc
Confidence 11122267899999999998877553
No 234
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.44 E-value=0.022 Score=57.49 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=55.9
Q ss_pred HhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC------CceEEEEeCCCCCHHHHHHHHHHHHhcCCC---C--
Q 038220 182 VIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF------DCCAWAYVSQEYRKWEILQDLCKKVLGLGK---A-- 250 (866)
Q Consensus 182 l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~---~-- 250 (866)
|..+=..-.++.|+|.+|+|||+||.+++.. ..... ..++|++....++...+. .+.+....... .
T Consensus 12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i 88 (226)
T cd01393 12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNI 88 (226)
T ss_pred hCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccE
Confidence 3333334579999999999999999998763 22222 458899888777654443 33333211100 0
Q ss_pred -ccccCCHHHHHHHHHHHhc----cCcEEEEEecCC
Q 038220 251 -DLDKMHMEDMKEELSNFLQ----ERRFIIVLDDIW 281 (866)
Q Consensus 251 -~~~~~~~~~~~~~l~~~L~----~k~~LlVlDdv~ 281 (866)
-....+.+++...+..... .+.-++|+|.+.
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 89 YVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred EEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 0011234555555554432 244588899874
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.40 E-value=0.007 Score=62.16 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=74.7
Q ss_pred eeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC-ccccCCCCceEE----EEeCCCC---------CH
Q 038220 168 IVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS-SDVKKHFDCCAW----AYVSQEY---------RK 233 (866)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~v~~~~---------~~ 233 (866)
+-+|..+..--+++|..++ +..|.+.|.+|.|||-||-...-. ...++.|..++- +.+.++. ..
T Consensus 226 i~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred cCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3346667777777777765 789999999999999998665432 122444543221 1222211 11
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHH---------HHHhccC---cEEEEEecCCChhhHHHHHhhCCCCCCCcE
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEEL---------SNFLQER---RFIIVLDDIWEKEAWDDLKAVFPDAKNGSR 301 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l---------~~~L~~k---~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~ 301 (866)
.-.++.|...+...... .......+...+ ..+.+++ +-++|+|..++... ..++-.+...+.|||
T Consensus 304 ~PWmq~i~DnLE~L~~~--~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsK 380 (436)
T COG1875 304 GPWMQAIFDNLEVLFSP--NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSK 380 (436)
T ss_pred cchHHHHHhHHHHHhcc--cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCE
Confidence 22333333333222111 111111121111 1222343 56899999987643 344445556788999
Q ss_pred EEEEecchhh
Q 038220 302 IIFTTRFKDV 311 (866)
Q Consensus 302 iivTtR~~~v 311 (866)
|+.|--..++
T Consensus 381 IVl~gd~aQi 390 (436)
T COG1875 381 IVLTGDPAQI 390 (436)
T ss_pred EEEcCCHHHc
Confidence 9988764433
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.40 E-value=0.015 Score=58.36 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=34.7
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
+.|..+=..-.++.|.|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 10 ELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 334333234579999999999999999998863 222234578887655543
No 237
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.02 Score=57.17 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=76.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC-----CCCHHHHHHHHHHHHhcCCCC---ccccCCHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ-----EYRKWEILQDLCKKVLGLGKA---DLDKMHMEDMK 261 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~ 261 (866)
.+++|||.+|.||||+++.+..= . .--.+.++..-.. .....+-..++++.++..... -....+-.+.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L--~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL--E-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC--c-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 49999999999999999999972 2 2223333332111 112233455555555532100 00111223333
Q ss_pred H-HHHHHhccCcEEEEEecCCChhh---HHHHHhhCCC--CCCCcEEEEEecchhhhhccCCCCCCeeccCCC-hHHHHH
Q 038220 262 E-ELSNFLQERRFIIVLDDIWEKEA---WDDLKAVFPD--AKNGSRIIFTTRFKDVAVYADPGSPPYELCLLN-EEDSCE 334 (866)
Q Consensus 262 ~-~l~~~L~~k~~LlVlDdv~~~~~---~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~-~~~~~~ 334 (866)
+ .+.+.|.-++-++|.|..-+.-+ -.++...+.+ ...|-..+..|-+-.|+.++.....++.++..- ...+-+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 3 46777788999999998654321 1233322221 223555777777777777665433344444332 233444
Q ss_pred HH
Q 038220 335 LL 336 (866)
Q Consensus 335 Lf 336 (866)
+|
T Consensus 197 ~~ 198 (268)
T COG4608 197 VF 198 (268)
T ss_pred Hh
Confidence 44
No 238
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.038 Score=59.38 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=77.4
Q ss_pred CeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC-----C--------------CCceEEEEe
Q 038220 167 DIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK-----H--------------FDCCAWAYV 227 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~--------------f~~~~wv~v 227 (866)
.++|-+....++..+......-...+.++|+.|+||||+|..+.+...-.. . +.-+..+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777788888888875443334599999999999999998887411000 0 011222222
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEE
Q 038220 228 SQEYR---KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRI 302 (866)
Q Consensus 228 ~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i 302 (866)
+.... ..+..+++.+...... ..++.-++++|+++... .-..+...+-.....+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~-------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP-------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC-------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 22211 1111111111111100 02467899999998653 445566666666667788
Q ss_pred EEEecch-hhhhccCCCCCCeeccC
Q 038220 303 IFTTRFK-DVAVYADPGSPPYELCL 326 (866)
Q Consensus 303 ivTtR~~-~v~~~~~~~~~~~~l~~ 326 (866)
|++|... .+..-.......+++.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8888633 33332223335566665
No 239
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.026 Score=54.66 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=70.6
Q ss_pred CCCCCeeechhhHHHHHHHHh---cCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVI---HGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
.+-..++|.+..++.+++--. .+- .---|.+||.-|+|||.|++.+.+. +....-. -|.|++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 344578998888887776433 232 2346789999999999999999983 3332221 3333321
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCC---hhhHHHHHhhCCC---CCCCcEEEEEecc
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWE---KEAWDDLKAVFPD---AKNGSRIIFTTRF 308 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~l~~---~~~gs~iivTtR~ 308 (866)
+-.+...+.+.|+. ..+||.|..||+.- .+.+..++..+.. ..+...++..|.+
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 00122333333433 36899999999863 3578888888763 2333444444443
No 240
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.12 Score=53.37 Aligned_cols=200 Identities=25% Similarity=0.275 Sum_probs=109.2
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
.++=|-++.+++|.+.+.-+ =..++=|.++|++|.|||-||++|++. .... |+.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH----
Confidence 35667888888887766421 124678899999999999999999993 3333 3444332
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhcc-CcEEEEEecCCCh-------------h---hHHHHHhhCC--C
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIWEK-------------E---AWDDLKAVFP--D 295 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~-------------~---~~~~l~~~l~--~ 295 (866)
++.+...+. ...+++.+.+..+. .+..|.+|.++.. + .+=++...+. +
T Consensus 220 ----ElVqKYiGE---------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ----ELVQKYIGE---------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ----HHHHHHhcc---------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 233333332 13444555555544 5889999988631 1 1122333333 2
Q ss_pred CCCCcEEEEEecchhhhhc--cCCC--CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch--
Q 038220 296 AKNGSRIIFTTRFKDVAVY--ADPG--SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP-- 369 (866)
Q Consensus 296 ~~~gs~iivTtR~~~v~~~--~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-- 369 (866)
....-|||..|...++..- +.++ ...+++..-+.+.-.++|.-++-...- ...-++ +.+++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l---~~dvd~----e~la~~~~g~sGA 359 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL---ADDVDL----ELLARLTEGFSGA 359 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC---ccCcCH----HHHHHhcCCCchH
Confidence 3445789998865554321 1222 245677655556666777666644331 112223 33555554443
Q ss_pred --hHHHHHhhhccCCC--C--CHHHHHHHHHhh
Q 038220 370 --LAIVVLGGLLSSKE--A--TYSEWLKVLQSV 396 (866)
Q Consensus 370 --lai~~i~~~l~~~~--~--~~~~w~~~l~~~ 396 (866)
-|+.+=|++++-+. . +.+++.+..+..
T Consensus 360 dlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 360 DLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 34445455553221 1 445555555443
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.37 E-value=0.011 Score=57.49 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=35.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-YRKWEILQDLCKKVLG 246 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~ 246 (866)
++++.++|+.|+||||.+-+++.. .+.+-..+..++.... ....+-++...+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 369999999999999877666652 2222334667765432 2344556666666654
No 242
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.37 E-value=0.019 Score=58.27 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=36.0
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKH----FDCCAWAYVSQEYRKWEI 236 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~ 236 (866)
.-.++.|+|.+|+|||+||.+++........ -..++|++....++...+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 4579999999999999999999753222221 357999998887765443
No 243
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.29 E-value=0.13 Score=57.55 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=80.2
Q ss_pred CCeeechhhHHHHHHHHhc--------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIH--------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
.++.|.+.-++.+.+.... +-...+-|.++|++|.|||.+|+.+.+. ....| +-+.++.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 4677877666655543211 1123567899999999999999999984 22221 1222211
Q ss_pred HHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh----h----------hHHHHHhhCCCCCCCcEEE
Q 038220 238 QDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK----E----------AWDDLKAVFPDAKNGSRII 303 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~----------~~~~l~~~l~~~~~gs~ii 303 (866)
+.....+ .....+.+.+...-...+++|++|+++.. . ....+...+.....+--||
T Consensus 295 --l~~~~vG--------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 295 --LFGGIVG--------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred --hcccccC--------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 1100000 01122222222222357899999998631 0 1112222333333344455
Q ss_pred EEecchhh-hhcc---CCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 304 FTTRFKDV-AVYA---DPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 304 vTtR~~~v-~~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
.||..... ...+ +.-...+.++.-+.++-.++|..+...
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 56654431 1111 122256788888888888888877644
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.019 Score=60.68 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV 227 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v 227 (866)
..+.++|..|+|||+||..+++. ....-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 57999999999999999999984 2222234566654
No 245
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.27 E-value=0.16 Score=50.38 Aligned_cols=229 Identities=17% Similarity=0.206 Sum_probs=125.6
Q ss_pred CeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC----ccccCCCCceEEEEeCCC----------C-
Q 038220 167 DIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS----SDVKKHFDCCAWAYVSQE----------Y- 231 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~f~~~~wv~v~~~----------~- 231 (866)
.+.++++..+.+......+ ..+-+.++|++|.||-|.+..+.+. -.-+-+-+..-|.+-+.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 3667777777777766643 3778999999999999977555432 111112233344432221 1
Q ss_pred ----------CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcE-EEEEecCCCh--hhHHHHHhhCCCCCC
Q 038220 232 ----------RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRF-IIVLDDIWEK--EAWDDLKAVFPDAKN 298 (866)
Q Consensus 232 ----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~ 298 (866)
....+.+++++++.....-+.. ..+.| ++|+-.++.. ++-..++...-.-.+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie~~---------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIETQ---------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchhhc---------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1234444454444432110000 12344 4556555543 444555555444455
Q ss_pred CcEEEEEecc-hhhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhh
Q 038220 299 GSRIIFTTRF-KDVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGG 377 (866)
Q Consensus 299 gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~ 377 (866)
.+|+|+...+ ..+........-.+++...+++|-...+++-.-..+- ..| .+++++|+++++|+---.-.+-.
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l---~lp---~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL---QLP---KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc---cCc---HHHHHHHHHHhcccHHHHHHHHH
Confidence 6777765432 2222222233356889999999999999887755431 223 68899999999987532222221
Q ss_pred hccC---------CCCCHHHHHHHHHhhhhhccC-CC-hhHHHHHHHhcCCC
Q 038220 378 LLSS---------KEATYSEWLKVLQSVQWQLNL-NP-AKCMDILKLSYQDL 418 (866)
Q Consensus 378 ~l~~---------~~~~~~~w~~~l~~~~~~~~~-~~-~~~~~~l~~sy~~L 418 (866)
..+- .....-+|+-++.+.....-. +. ..+..+-..=|+-|
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1111 112346899888877665543 22 55555555555544
No 246
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.014 Score=67.46 Aligned_cols=117 Identities=20% Similarity=0.358 Sum_probs=70.5
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCC---CceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF---DCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~~~~~ 234 (866)
...++|.++.+..+.+.+... .....+...+|+.|||||.||+.++.. -| +..+-+++|+.-..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~Ek- 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEK- 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHH-
Confidence 357999999999999888642 223578888999999999999988862 23 23344444443211
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcE-EEEEecCCCh--hhHHHHHhhCCC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRF-IIVLDDIWEK--EAWDDLKAVFPD 295 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~l~~~l~~ 295 (866)
.-+..+.+. ++..... ++ .-.|-+..+.++| +|.||++... +.++.+...|.+
T Consensus 564 ----HsVSrLIGa-PPGYVGy--ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 564 ----HSVSRLIGA-PPGYVGY--EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ----HHHHHHhCC-CCCCcee--cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 122333332 1111110 11 1234444455777 7889999754 567777777654
No 247
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.26 E-value=0.014 Score=59.60 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=38.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+.-|+|.+|+|||.||.+++-...+.. .=..++|++-...|+...+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 35899999999999999988764322221 12359999999999887765 455543
No 248
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.23 E-value=0.033 Score=53.83 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=62.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeC--CCCCHHHHHH------HHHHHHhcCC--CCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVS--QEYRKWEILQ------DLCKKVLGLG--KADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~--~~~~~~~~~~------~i~~~~~~~~--~~~~~~~~~~~ 259 (866)
.+++|+|..|+|||||++.++.. .....+.+++.-. ...+...... ++++.+.... .......+..+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 48999999999999999999983 2223444444211 1112222111 1233332210 01111222222
Q ss_pred -HHHHHHHHhccCcEEEEEecCCC---hhhHHHHHhhCCCC-CC-CcEEEEEecchhhh
Q 038220 260 -MKEELSNFLQERRFIIVLDDIWE---KEAWDDLKAVFPDA-KN-GSRIIFTTRFKDVA 312 (866)
Q Consensus 260 -~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~ 312 (866)
..-.+...+...+-++++|+--. ....+.+...+... .. +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 23345666677889999998653 23333343333321 12 56788888765543
No 249
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.19 E-value=0.026 Score=54.48 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=59.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC-CCCc----------cccCCHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL-GKAD----------LDKMHME 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-~~~~----------~~~~~~~ 258 (866)
.+++|+|..|+|||||++.+.... ....+.+++.-. +.......+.+.+... +.+. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 489999999999999999999742 122333433211 1111111111111110 0000 0111122
Q ss_pred HH-HHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 259 DM-KEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 259 ~~-~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
+. .-.+...+..++-++++|+.... ...+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22 22455556678889999987543 222223222221123567888887766544
No 250
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.18 E-value=0.0091 Score=55.24 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 251
>PRK06696 uridine kinase; Validated
Probab=96.17 E-value=0.0059 Score=61.33 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHhc-CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 171 LGEDMMILGNRVIH-GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 171 r~~~~~~l~~~l~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
|++-+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56667777877765 344578999999999999999999987
No 252
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.17 E-value=0.0047 Score=68.29 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=39.4
Q ss_pred CeeechhhHHHHHHHHhc----CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 167 DIVGLGEDMMILGNRVIH----GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+++|.++.+++|++.|.. .+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999933 344568999999999999999999987
No 253
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.11 Score=55.04 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=61.5
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCC
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNA 346 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 346 (866)
++.-++|+|+++.. ...+.+...+-....++.+|++|.+. .+..-+......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999865 56788888887777777777766554 3332222223678999999999998886641 1
Q ss_pred CCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 347 MSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 347 ~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
++ ...++..++|.|..+..+
T Consensus 206 ----~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ----AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ----Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755443
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.14 E-value=0.0039 Score=59.76 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=25.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV 227 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v 227 (866)
.-+.|+|..|+|||.||..+.+. .+...+ .+.|+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEeec
Confidence 57999999999999999999874 223222 3566653
No 255
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.04 Score=52.65 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC---ccccCC---CC--ceEEEEeCCCCCHHHHHHHHHHHHhcCC---CCccccCCHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS---SDVKKH---FD--CCAWAYVSQEYRKWEILQDLCKKVLGLG---KADLDKMHME 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~v~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~ 258 (866)
.+++|+|+.|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.+.... .......+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 48999999999999999998642 111111 11 12232 22 34444444321 1111222222
Q ss_pred HH-HHHHHHHhccC--cEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchhhhh
Q 038220 259 DM-KEELSNFLQER--RFIIVLDDIWEK---EAWDDLKAVFPD-AKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 259 ~~-~~~l~~~L~~k--~~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 313 (866)
+. .-.+...+..+ +-++++|+--.. ...+.+...+.. ...|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 22355555566 778889986432 333333333322 124667888888776554
No 256
>PRK07667 uridine kinase; Provisional
Probab=96.13 E-value=0.0064 Score=59.45 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+.|.+.+..-.+...+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777777666678999999999999999999987
No 257
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.024 Score=61.09 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCeeechh---hHHHHHHHHhcCC-------CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGE---DMMILGNRVIHGG-------LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~---~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++-|.|+ |+++|+++|.++. .=++-|.++|++|.|||-||+.|+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 46677765 5667888887642 22567899999999999999999984
No 258
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.07 E-value=0.0063 Score=57.79 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=44.1
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDK-MHMEDMKEELSNFLQ 269 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~ 269 (866)
++.|.|.+|+||||+|..+... ... .++++.-... ...+..+.|.......+. .... ....++.+.+..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~-~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQP-FDDEMAARIAHHRQRRPA-HWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCC-CCeEecccccHHHHHHhhcC
Confidence 6899999999999999998863 111 2344433333 334455555544443311 1111 011234444544333
Q ss_pred cCcEEEEEecC
Q 038220 270 ERRFIIVLDDI 280 (866)
Q Consensus 270 ~k~~LlVlDdv 280 (866)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888886
No 259
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.06 E-value=0.28 Score=55.31 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=114.1
Q ss_pred CCeeechhhHHHHHHHHhcC--C-CceEEEEEEccCCChHHHHHHHHhcCcc------ccCCCCceEEEEeCCCCCHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG--G-LRRSVISIIGMAGLGKTTLAKKMYQSSD------VKKHFDCCAWAYVSQEYRKWEI 236 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~--~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~f~~~~wv~v~~~~~~~~~ 236 (866)
..+-+|+.+..+|-..+..- . ...+.+-|.|.+|+|||..+..|.+... --..|+ .+.|+.-.=....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 34668999999999888652 2 3345899999999999999999997411 122343 233333333457788
Q ss_pred HHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-----cCcEEEEEecCCChhh--HHHHHhhCC-CCCCCcEEEEEecc
Q 038220 237 LQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-----ERRFIIVLDDIWEKEA--WDDLKAVFP-DAKNGSRIIFTTRF 308 (866)
Q Consensus 237 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTtR~ 308 (866)
...|..++.+. ...+....+.+..++. .+..++++|+++..-. -+-+-..|. ....+||++|.+=.
T Consensus 475 Y~~I~~~lsg~------~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 475 YEKIWEALSGE------RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHhcccC------cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 88888887764 2244556666666664 3578999998854311 122222232 23457777776532
Q ss_pred h-----------hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 309 K-----------DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 309 ~-----------~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
. .++..++. ..+...+.+.++-.++...+..+.. ...+...+=++++++...|-.-.|+.+.-
T Consensus 549 NTmdlPEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL~~~~---~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARLKGLD---AFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred ccccCHHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhhcchh---hcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 12222222 3456666677776666655543331 11222333344555555554444444433
No 260
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.05 E-value=0.052 Score=50.16 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=55.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCH-HHHHHHHHHHh
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHM-EDMKEELSNFL 268 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~~L 268 (866)
.+++|+|..|.|||||++.+.... ....+.+|+.-.. .+... . . .+. +...-.+...+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~-~---lS~G~~~rv~laral 85 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-E-Q---LSGGEKMRLALAKLL 85 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-c-c---CCHHHHHHHHHHHHH
Confidence 489999999999999999998742 2233444442100 00000 0 0 111 22222355556
Q ss_pred ccCcEEEEEecCCC---hhhHHHHHhhCCCCCCCcEEEEEecchhhh
Q 038220 269 QERRFIIVLDDIWE---KEAWDDLKAVFPDAKNGSRIIFTTRFKDVA 312 (866)
Q Consensus 269 ~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (866)
..++-++++|+--. ....+.+...+... +..||++|.+....
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 67788999998643 23333444333322 24577777765544
No 261
>PRK04296 thymidine kinase; Provisional
Probab=96.05 E-value=0.0088 Score=58.26 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=59.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.++.|+|..|.||||+|...... ...+-..++.+. ..++.......++.+++.. .........+++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~-~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLS-REAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCc-ccceEeCChHHHHHHHHh-hC
Confidence 47889999999999999888773 333333334332 1112122222333333221 111111233455555554 33
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD 310 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (866)
++.-+||+|.+.-. +....+...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34568999999653 2233333332 245778999988644
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.03 E-value=0.032 Score=56.56 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=57.3
Q ss_pred HHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCC-----------
Q 038220 181 RVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGK----------- 249 (866)
Q Consensus 181 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------- 249 (866)
.|..+=+.-+++.|+|.+|+|||+||.++... ..+ .=..++|++..+. ..++.+++. ++.-.-.
T Consensus 17 ~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~ 91 (234)
T PRK06067 17 KLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIF 91 (234)
T ss_pred hhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEE
Confidence 33344334579999999999999999998653 122 2346888888654 445544432 2211100
Q ss_pred ------CccccCCHHHHHHHHHHHhcc-CcEEEEEecCC
Q 038220 250 ------ADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIW 281 (866)
Q Consensus 250 ------~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~ 281 (866)
......+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 001122345666667666654 56689999875
No 263
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.03 E-value=0.015 Score=56.09 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=27.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEE
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWA 225 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 225 (866)
..+|.|.|+.|+||||+|+.+++ .....+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 45999999999999999999997 444455555555
No 264
>PRK04132 replication factor C small subunit; Provisional
Probab=95.98 E-value=0.18 Score=59.78 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=92.1
Q ss_pred cCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEE
Q 038220 197 MAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFII 275 (866)
Q Consensus 197 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 275 (866)
+.++||||+|..++++. ..+.++ .++-++.+..... +.++++++.+..... .. ..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgi-d~IR~iIk~~a~~~~--~~---------------~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGI-NVIREKVKEFARTKP--IG---------------GASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccH-HHHHHHHHHHHhcCC--cC---------------CCCCEEE
Confidence 77899999999999851 122232 2455555553333 344444444332100 00 1245799
Q ss_pred EEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCCh
Q 038220 276 VLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPP 352 (866)
Q Consensus 276 VlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~ 352 (866)
|+|+++.. .+.+.+...+-.....+++|+++.+. .+..-.......+.+.+++.++....+...+...+- ..+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELT- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCC-
Confidence 99999876 46677777776555566676666543 333223333478999999999988877765543221 112
Q ss_pred hHHHHHHHHHHHcCCchhHH
Q 038220 353 WSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 353 ~~~~~~~~i~~~~~g~Plai 372 (866)
.+....|++.++|.+-.+
T Consensus 711 --~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 711 --EEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --HHHHHHHHHHcCCCHHHH
Confidence 457788999999988543
No 265
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.98 E-value=0.041 Score=64.90 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
..++|.++.++.|.+.+... ......+.++|+.|+|||++|+.+... .. ...+.++++.......
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc---
Confidence 35899999999998888631 112457899999999999999999873 22 2234444443221111
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhc-cCcEEEEEecCCCh--hhHHHHHhhCC
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-ERRFIIVLDDIWEK--EAWDDLKAVFP 294 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~--~~~~~l~~~l~ 294 (866)
...+.+... .....+. ...+.+.+. ...-+|+||+++.. +.++.+...+.
T Consensus 530 --~~~LiG~~~-gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPP-GYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCC-Ccccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 122222211 1010000 112222333 34569999999765 45666666554
No 266
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.98 E-value=0.038 Score=58.75 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHHH
Q 038220 181 RVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH----FDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 181 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~ 238 (866)
.|..+=+.-.++-|+|.+|+|||++|.+++........ =..++|++....|+...+.+
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 34443334579999999999999999988754221111 13699999998888776554
No 267
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.97 E-value=0.0071 Score=55.51 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=31.3
Q ss_pred eechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 169 VGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
||+-..++++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 46666777777777653222356789999999999999999874
No 268
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.96 E-value=0.03 Score=54.83 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=43.5
Q ss_pred EEEEEccCCChHHHHHHHHhcCcccc-CCCC---ceEEEEeCCCCCHHHHHHHHHHHHhcC-CCCccccCCHHHHHHHHH
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVK-KHFD---CCAWAYVSQEYRKWEILQDLCKKVLGL-GKADLDKMHMEDMKEELS 265 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~---~~~wv~v~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~ 265 (866)
||+|.|.+|+||||+|+.+... .. .... ....+............. .-...... ........+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999873 22 1122 133333322222222111 11111111 111234457777888787
Q ss_pred HHhccCcEEE
Q 038220 266 NFLQERRFII 275 (866)
Q Consensus 266 ~~L~~k~~Ll 275 (866)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665443
No 269
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.95 E-value=0.023 Score=59.42 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=53.8
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHHHHHH
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDMKEEL 264 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~l 264 (866)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++..... -....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34579999999999999999998763 33344568899887776642 23333221000 00111345555555
Q ss_pred HHHhc-cCcEEEEEecCC
Q 038220 265 SNFLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 265 ~~~L~-~k~~LlVlDdv~ 281 (866)
...+. +..-+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55544 356789999874
No 270
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.95 E-value=0.076 Score=50.47 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=57.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEE-------EeCCCCCHHHHHHHHHHHHhcCCCCccccCCH-HHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWA-------YVSQEYRKWEILQDLCKKVLGLGKADLDKMHM-EDMK 261 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~ 261 (866)
.+++|+|..|.|||||++.+...... ..+.+++ .+.+..... -..+.+.+... . ....+. +...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~-~--~~~LS~G~~~r 99 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYP-W--DDVLSGGEQQR 99 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccc--cccHHHHhhcc-C--CCCCCHHHHHH
Confidence 48999999999999999999974211 1222221 122322111 01122222110 0 011122 2233
Q ss_pred HHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 262 EELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 262 ~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
-.+.+.+..++-++++|+--.. .....+...+... +..+|++|.+.....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3456666678888999986432 2223333333222 356777777665543
No 271
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.16 Score=56.68 Aligned_cols=158 Identities=23% Similarity=0.164 Sum_probs=83.4
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
.-.++=|.++-+.+|.+.+.- +-..++-|..+|++|.|||++|+.+.+. .+..| +.+...
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH--
Confidence 334555666655555544321 1135678999999999999999999993 33333 333221
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------hhHHHHHhhCCCCCCC
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------EAWDDLKAVFPDAKNG 299 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~g 299 (866)
+++...-+. +...+.+..++.=+--+.+|.||.++.. ....++..-+......
T Consensus 503 ------EL~sk~vGe--------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 503 ------ELFSKYVGE--------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred ------HHHHHhcCc--------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc
Confidence 112222221 1122333333332345688888887532 1223333333322223
Q ss_pred cEEEE---Eecchhhhhc-cCC--CCCCeeccCCChHHHHHHHHHHHhCCC
Q 038220 300 SRIIF---TTRFKDVAVY-ADP--GSPPYELCLLNEEDSCELLFKKAFAGG 344 (866)
Q Consensus 300 s~iiv---TtR~~~v~~~-~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 344 (866)
..|+| |.|...+-.. +.+ ....+.++.=+.+.-.++|+.++-+.+
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 34444 3344433222 221 235667777777888889988886654
No 272
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.025 Score=57.10 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=49.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCc--cccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSS--DVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (866)
-|+|.++|++|.|||+|++..++.. |....|.....+.++.. .+...+... ...-...+...+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE-----SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE-----SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh-----hhhHHHHHHHHHHH
Confidence 4899999999999999999999863 33455555455544332 223333332 11123455556666
Q ss_pred HhccCc--EEEEEecCCC
Q 038220 267 FLQERR--FIIVLDDIWE 282 (866)
Q Consensus 267 ~L~~k~--~LlVlDdv~~ 282 (866)
.+.++. +++.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 666554 3455788853
No 273
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.057 Score=60.82 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=87.5
Q ss_pred CCCeeechhhHHHHHHHHhcC----CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG----GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
+.+=+|.++-+++|+++|.-. +-.-+++++||++|+|||.|++.+++ .....| +-++++.--+..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh----
Confidence 456689999999999998642 22347999999999999999999998 455554 22233332222111
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh------hHHHHHhhCCC-CC------------CCcE
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE------AWDDLKAVFPD-AK------------NGSR 301 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~------------~gs~ 301 (866)
.+....-...+. ..+++.+++ .+.++-+++||.++... --..+...|.. ++ -=|+
T Consensus 393 ----RGHRRTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 393 ----RGHRRTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ----ccccccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 111000011111 222223322 24678899999986431 11222222210 00 1244
Q ss_pred E-EEEecch-h-hhhccCCCCCCeeccCCChHHHHHHHHHHH
Q 038220 302 I-IFTTRFK-D-VAVYADPGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 302 i-ivTtR~~-~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
| .|+|-|. + +..-.-..-.++++.+.+++|-.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 4444332 1 211111122788999999998887776654
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.037 Score=56.44 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=44.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
..-+.++|.+|+|||.||..+.+. +...--.+.++++ .+++.++....... .....+.+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~~-----------~~~~~l~~~l 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDEG-----------RLEEKLLREL 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcC-----------chHHHHHHHh
Confidence 457889999999999999999995 3332223556543 34445444433321 1112222222
Q ss_pred ccCcEEEEEecCCC
Q 038220 269 QERRFIIVLDDIWE 282 (866)
Q Consensus 269 ~~k~~LlVlDdv~~ 282 (866)
.+-=||||||+..
T Consensus 166 -~~~dlLIiDDlG~ 178 (254)
T COG1484 166 -KKVDLLIIDDIGY 178 (254)
T ss_pred -hcCCEEEEecccC
Confidence 2445899999865
No 275
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.86 E-value=0.13 Score=52.86 Aligned_cols=131 Identities=20% Similarity=0.120 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCc---
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKAD--- 251 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~--- 251 (866)
.+.++..+.... ...-++|+|..|.|||||.+.+... +. ...+.+++.- ......+...++...........
T Consensus 98 ~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhcccccccccc
Confidence 444455554332 3578999999999999999999973 22 2233344321 11110011123333222210000
Q ss_pred -cccCCHHHHHHHHHHHhc-cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 252 -LDKMHMEDMKEELSNFLQ-ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 252 -~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
.+-.+...-..-+...+. ..+-++++|.+...+.+..+...+. .|..+|+||-...+..
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 000000001111222222 5788999999987777776666653 4777999998766543
No 276
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.033 Score=64.42 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC-CC-----CceEEEEeCCCCCHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK-HF-----DCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f-----~~~~wv~v~~~~~~~~~~~ 238 (866)
-..++||++|++++++.|.....+-+ .++|.+|||||++|.-++. ++.. .- +..++. .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s------------L 232 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS------------L 232 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE------------e
Confidence 35689999999999999988643333 3589999999998765554 2211 10 111111 0
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhc-cCcEEEEEecCCCh-----------hhHHHHHhhCCCCCCCcEEEEEe
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-ERRFIIVLDDIWEK-----------EAWDDLKAVFPDAKNGSRIIFTT 306 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTt 306 (866)
++..-+.+. --..+.++....+.+.++ .++..+.+|.++.. +.-.-++++|..+. --.|=-||
T Consensus 233 D~g~LvAGa----kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 233 DLGSLVAGA----KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred cHHHHhccc----cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 111111121 011133444444444443 45899999998632 23334555554332 23355566
Q ss_pred cchhhhhccC------CCCCCeeccCCChHHHHHHHHH
Q 038220 307 RFKDVAVYAD------PGSPPYELCLLNEEDSCELLFK 338 (866)
Q Consensus 307 R~~~v~~~~~------~~~~~~~l~~L~~~~~~~Lf~~ 338 (866)
-++.- .+.. ...+++.+..-+.+++..++.-
T Consensus 308 ~~EYR-k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 308 LDEYR-KYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHH-HHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 43321 1111 2237788999999999988854
No 277
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.83 E-value=0.084 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|++|+||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3899999999999999999984
No 278
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.82 E-value=0.061 Score=51.59 Aligned_cols=21 Identities=48% Similarity=0.738 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998886
No 279
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.81 E-value=0.037 Score=58.63 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 181 RVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK----KHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 181 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
.|..+=+.-++.-|+|.+|+|||+|+.+++-..... ..-..++|++....|+.+++.+ +++.+.
T Consensus 118 lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred hcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 344443345799999999999999998886321211 1124689999999999877655 444443
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.80 E-value=0.023 Score=55.71 Aligned_cols=110 Identities=12% Similarity=0.193 Sum_probs=58.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.++.|+|+.|+||||++..+... ........++. +.... +...... ...... . +. ..+.....+.++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~--E~~~~~~-~~~i~q-~-~v-g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPI--EFVHESK-RSLINQ-R-EV-GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCc--cccccCc-cceeee-c-cc-CCCccCHHHHHHHHhc
Confidence 37899999999999999987763 22233333333 22211 1000000 000000 0 00 1112334556777777
Q ss_pred cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhh
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDV 311 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 311 (866)
..+=.+++|++.+.+.+..+.... ..|..++.|+-...+
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 777899999998776655544332 234556666654444
No 281
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.78 E-value=0.079 Score=60.44 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=36.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 468999999998887765543 34568999999999999999976
No 282
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.78 E-value=0.03 Score=58.57 Aligned_cols=88 Identities=22% Similarity=0.112 Sum_probs=53.6
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCC--CccccCCHHHHHHHH
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGK--ADLDKMHMEDMKEEL 264 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~l 264 (866)
+.-+++.|+|++|+||||||.++... ....-..++|++..+.++.. .+++++.... --......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34579999999999999999988763 33334558899877766542 2333332100 000112344555555
Q ss_pred HHHhc-cCcEEEEEecCC
Q 038220 265 SNFLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 265 ~~~L~-~k~~LlVlDdv~ 281 (866)
...++ +..-+||+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456789999874
No 283
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.78 E-value=0.039 Score=58.19 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=42.0
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
+.|..+=+.-.++.|+|.+|+|||||+..++....... .-..++|++....++..++ .++++..
T Consensus 87 ~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 87 KLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred HHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 33444433467999999999999999998875211111 1135799998888887763 3344443
No 284
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.74 E-value=0.1 Score=49.96 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 49999999999999999999873
No 285
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.054 Score=55.33 Aligned_cols=97 Identities=21% Similarity=0.131 Sum_probs=58.1
Q ss_pred HhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH-HhcC-CCCccccCCHHH
Q 038220 182 VIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKK-VLGL-GKADLDKMHMED 259 (866)
Q Consensus 182 l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-~~~~-~~~~~~~~~~~~ 259 (866)
|..+=+.-+++=|+|+.|+||||+|.+++-. .+..-..++|++....+++..+.. +... .... -..+.......+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~ 129 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLE 129 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHH
Confidence 3344345689999999999999999988763 444445799999999998766543 3333 2211 000111111123
Q ss_pred HHHHHHHHhccCcEEEEEecCC
Q 038220 260 MKEELSNFLQERRFIIVLDDIW 281 (866)
Q Consensus 260 ~~~~l~~~L~~k~~LlVlDdv~ 281 (866)
+++.+......+--|+|+|.+-
T Consensus 130 i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCc
Confidence 3333333333346688899874
No 286
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.06 Score=59.73 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=107.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
+++||-+.-...|...+..+.-. .--...|+-|+||||+|+-++.-..-.. + .....+.....=++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIA-HAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcch-hhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 46799998888888888776421 2345689999999999998875211110 0 01111111111112211100
Q ss_pred cC--CCCccccCCHHHHHHHHHHHh----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccC
Q 038220 246 GL--GKADLDKMHMEDMKEELSNFL----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYAD 316 (866)
Q Consensus 246 ~~--~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~ 316 (866)
.. .-+.......+++.+.+.+.. .++--+.|+|.|+-. ..|..+...+-......+.|..|.+.+ +..-.-
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 00 000112223344444333322 245568899999744 678888888776666777777666543 322122
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
.....+.++.++.++-...+...+-...-. ...+....|++..+|..-
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~------~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGIN------IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCc------cCHHHHHHHHHHcCCChh
Confidence 223789999999998888887766443211 123555667777766543
No 287
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.008 Score=54.42 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
--|.|.|++|+||||+++.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4689999999999999999997
No 288
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.70 E-value=0.058 Score=57.28 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc---C-CCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK---K-HFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
+.|..+=..-.++-|+|.+|+|||+||..++-..... . .-..++|++....|+.+++. ++++.+.
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3344443345799999999999999998877431111 1 11269999999999887754 4555443
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.69 E-value=0.038 Score=52.37 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=58.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHHHHHHHHhcCCCCccccCCHHH-HHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ--EYRKWEILQDLCKKVLGLGKADLDKMHMED-MKEELSN 266 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~ 266 (866)
.+++|+|..|.|||||.+.++.. .....+.+++.-.. ..+..+. ..+.+... ...+..+ ..-.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~-----~qLS~G~~qrl~lar 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDA---RRAGIAMV-----YQLSVGERQMVEIAR 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHH---HhcCeEEE-----EecCHHHHHHHHHHH
Confidence 48999999999999999999973 22334555543211 1111111 01111110 1122222 2334566
Q ss_pred HhccCcEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchhh
Q 038220 267 FLQERRFIIVLDDIWEK---EAWDDLKAVFPD-AKNGSRIIFTTRFKDV 311 (866)
Q Consensus 267 ~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtR~~~v 311 (866)
.+..++-++++|+.-.. .....+...+.. ...+..||++|.+...
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 66678889999986532 223333333321 1235668888877653
No 290
>PRK09354 recA recombinase A; Provisional
Probab=95.69 E-value=0.04 Score=58.18 Aligned_cols=91 Identities=21% Similarity=0.110 Sum_probs=55.9
Q ss_pred cCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHHH
Q 038220 184 HGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDMK 261 (866)
Q Consensus 184 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~ 261 (866)
.+=+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++..... -......++..
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l 127 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQAL 127 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHH
Confidence 33334579999999999999999988763 33344568999888877652 33333321000 00111244555
Q ss_pred HHHHHHhc-cCcEEEEEecCC
Q 038220 262 EELSNFLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 262 ~~l~~~L~-~k~~LlVlDdv~ 281 (866)
..+...++ +..-+||+|-|-
T Consensus 128 ~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 128 EIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHhhcCCCCEEEEeChh
Confidence 55555544 456789999874
No 291
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.1 Score=55.27 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=41.7
Q ss_pred cCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCeeccCCChHHHHHHHHHH
Q 038220 270 ERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 270 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
+++-++|+|++... ..-..+...+.....+..+|++|.+. .+...+......+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34445566887654 33344444444333456577777654 343333333478899999999998877553
No 292
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.13 Score=49.90 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHhccCcEEEEEecCCChhh---HHHHHhhCC-CCCCCcEEEEEecchhhhhccCCC
Q 038220 261 KEELSNFLQERRFIIVLDDIWEKEA---WDDLKAVFP-DAKNGSRIIFTTRFKDVAVYADPG 318 (866)
Q Consensus 261 ~~~l~~~L~~k~~LlVlDdv~~~~~---~~~l~~~l~-~~~~gs~iivTtR~~~v~~~~~~~ 318 (866)
...+.+.+--++-+.|||..++--+ ...+...+. -...|+.+++.|....++.+..+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 3445555556788999999876533 333322222 123366688888888888877654
No 293
>PRK05973 replicative DNA helicase; Provisional
Probab=95.67 E-value=0.12 Score=51.64 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=73.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCC--------CccccCCHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGK--------ADLDKMHMEDM 260 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~ 260 (866)
-.++.|.|.+|+|||++|.++.... .+ .-..+++++.... ..++...+.+. +.... ...+....+.+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~~s~-g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRLRAL-GADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHHHHc-CCChHHhccceEeecCCCCCHHHH
Confidence 3589999999999999999887642 22 2345777766554 45555554322 11100 00111233344
Q ss_pred HHHHHHHhccCcEEEEEecCCCh------hhHHHHHhhCC--CCCCCcEEEEEecchhhhhc-cCCCCCCe-eccCCChH
Q 038220 261 KEELSNFLQERRFIIVLDDIWEK------EAWDDLKAVFP--DAKNGSRIIFTTRFKDVAVY-ADPGSPPY-ELCLLNEE 330 (866)
Q Consensus 261 ~~~l~~~L~~k~~LlVlDdv~~~------~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~-~~~~~~~~-~l~~L~~~ 330 (866)
+..+.. ..+.-++|+|-+... .....+...+. ....|..||+|+....-... .... +.+ .| .++..
T Consensus 139 i~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~-P~laDl-R~~~~ 214 (237)
T PRK05973 139 IARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPL-PDIRDV-RLPNP 214 (237)
T ss_pred HHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCC-CChhhc-CCCCh
Confidence 443333 124468999987532 11122111111 12456778888754332221 1111 111 11 22334
Q ss_pred HHHHHHHHHHhCCC
Q 038220 331 DSCELLFKKAFAGG 344 (866)
Q Consensus 331 ~~~~Lf~~~~~~~~ 344 (866)
--..||.+..|-..
T Consensus 215 ~d~~~f~~~~~~~~ 228 (237)
T PRK05973 215 LDLSLFDKACFLNN 228 (237)
T ss_pred hhHHHhhhhheecC
Confidence 55678888887654
No 294
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.65 E-value=0.16 Score=48.82 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=65.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe-------------------CCCCC------------------
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV-------------------SQEYR------------------ 232 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v-------------------~~~~~------------------ 232 (866)
.|++|+|++|+|||||.+.+..=+.+ =++.+|+.- =+.|+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 49999999999999999998763222 233455432 11221
Q ss_pred -------HHHHHHHHHHHHhcC---CCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCC-CCC
Q 038220 233 -------KWEILQDLCKKVLGL---GKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPD-AKN 298 (866)
Q Consensus 233 -------~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~-~~~ 298 (866)
.++...++++.++.. ...+..-+.-++..-.|.+.|.-++-++.||..-+. +-...+...+.. ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 122222333333322 111122223344455678888888999999998653 222222222221 234
Q ss_pred CcEEEEEecchhhhhc
Q 038220 299 GSRIIFTTRFKDVAVY 314 (866)
Q Consensus 299 gs~iivTtR~~~v~~~ 314 (866)
|-..|+.|..-..|..
T Consensus 186 GmTMivVTHEM~FAr~ 201 (240)
T COG1126 186 GMTMIIVTHEMGFARE 201 (240)
T ss_pred CCeEEEEechhHHHHH
Confidence 5556666665544443
No 295
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.60 E-value=0.053 Score=51.38 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=45.2
Q ss_pred EEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcc
Q 038220 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDK-MHMEDMKEELSNFLQE 270 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~ 270 (866)
+.|.|.+|+|||++|.++... ....++++.-.+.++. +....|.+..... ...... ....++.+.+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~-~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKEL-D- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhc-C-
Confidence 679999999999999998763 2245777777766654 3444444332222 111111 1122333333221 2
Q ss_pred CcEEEEEecC
Q 038220 271 RRFIIVLDDI 280 (866)
Q Consensus 271 k~~LlVlDdv 280 (866)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 3347999986
No 296
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.17 Score=49.65 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHHHHhccCcEEEEEecCCCh-------hhHHHHHhhCCCCCCCcEEEEEecchhhhhccCC
Q 038220 263 ELSNFLQERRFIIVLDDIWEK-------EAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADP 317 (866)
Q Consensus 263 ~l~~~L~~k~~LlVlDdv~~~-------~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 317 (866)
.+.+.|.-++-+||+|..-+. ..|+-+... . ...+-.+|+.|.+-.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l-~-~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLEL-K-KERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHH-H-HhcCceEEEEeCcHHHHHHHhh
Confidence 567777888899999987543 234333322 1 2234557888887777666554
No 297
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.2 Score=53.46 Aligned_cols=101 Identities=23% Similarity=0.252 Sum_probs=51.6
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC--HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR--KWEILQDLCKKVLGLGKADLDKMHMEDMKEELS 265 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 265 (866)
..++|+|+|++|+||||++..++.. ....=..+..++... +. ..+-++...+.... +-....+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgi---pv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGF---EVIAVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCC-cchHHHHHHHHHhhhcCC---cEEecCCHHHHHHHHH
Confidence 3579999999999999999998863 222212344554432 22 22222222222221 1111234455655554
Q ss_pred HHhcc-CcEEEEEecCCCh----hhHHHHHhhCC
Q 038220 266 NFLQE-RRFIIVLDDIWEK----EAWDDLKAVFP 294 (866)
Q Consensus 266 ~~L~~-k~~LlVlDdv~~~----~~~~~l~~~l~ 294 (866)
..-.. +.=+|++|-.... .....+...+.
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 43221 2356778876432 23445544443
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.57 E-value=0.044 Score=53.12 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 299
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.068 Score=51.25 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=60.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC-CCCc-ccc--------CCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL-GKAD-LDK--------MHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-~~~~-~~~--------~~~~~ 259 (866)
.+++|+|..|.|||||++.++... ....+.+++.-....+.. ..+.+.+... +.+. ... .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999998742 223444444211100000 1111111110 0100 000 11122
Q ss_pred -HHHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCC-CCCcEEEEEecchhhhh
Q 038220 260 -MKEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDA-KNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 260 -~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 313 (866)
..-.+...+..++-++++|+--.. ...+.+...+... ..|..+|++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 222466666778899999997542 2223333333211 12567888887766544
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.52 E-value=0.07 Score=58.62 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+.+|.++|.+|+||||.|..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888863
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.12 Score=49.43 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=58.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHHHHHHHHhcC-CCCcccc-------CCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ--EYRKWEILQDLCKKVLGL-GKADLDK-------MHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~~~~~-~~~~~~~-------~~~~~ 259 (866)
.+++|+|..|.|||||.+.++.-. ....+.+++.-.. ..... ...+.+... +.+.... .+..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~----~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLE----SLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHH----HHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 489999999999999999999732 2234444432111 00111 111111110 0000000 11112
Q ss_pred -HHHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 260 -MKEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 260 -~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
..-.+...+..++-++++|+-... ...+.+...+.....+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 122355556678889999986532 222333333322222466888887766544
No 302
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.29 Score=55.22 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=63.4
Q ss_pred CCCCeeechhhHHHHHHHHhcC----CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG----GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
-+.+=+|.++-+++|++++.-+ .-+-++++.+|++|||||.+|+.++. .....| +-++|+.-.+..++
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEI--- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhh---
Confidence 3456789999999999998643 33468999999999999999999997 333333 12334443332221
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCC
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
.+....-...+ ...+++.+++ .+..+-|+.+|.|+.
T Consensus 481 -----kGHRRTYVGAM-PGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 -----KGHRRTYVGAM-PGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred -----cccceeeeccC-ChHHHHHHHh-hCCCCceEEeehhhh
Confidence 11100000111 1334444443 245788999999863
No 303
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.45 E-value=0.046 Score=59.63 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC------CC--CccccCCHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL------GK--ADLDKMHMEDMK 261 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~------~~--~~~~~~~~~~~~ 261 (866)
..++|+|..|+|||||++.+.... .....+++..-...-+..+.....+...... .. +...........
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 489999999999999999988732 1222344443223334444444333332111 11 000000111112
Q ss_pred HHHHHHh--ccCcEEEEEecCCC
Q 038220 262 EELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 262 ~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
-.+.+++ +++.+|+++||+..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 2344444 47899999999843
No 304
>PRK14974 cell division protein FtsY; Provisional
Probab=95.45 E-value=0.1 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.7
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...++.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999997777775
No 305
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.43 E-value=0.0061 Score=35.48 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=10.4
Q ss_pred ceEEEeeCCCCcccccccc
Q 038220 591 LRYLDLRKTWLKMLPSSMG 609 (866)
Q Consensus 591 L~~L~l~~~~i~~lp~~i~ 609 (866)
|++|+|++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=95.43 E-value=0.066 Score=58.66 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=20.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999997766654
No 307
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.43 E-value=0.085 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.39 E-value=0.19 Score=55.45 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=26.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
+++.++|++|+||||++..++........-..+..++...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5999999999999998887765211012223466666543
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.38 E-value=0.083 Score=50.65 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=58.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC--CCCHHHHHHHHHHHHhcC-CCCcccc-------CCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ--EYRKWEILQDLCKKVLGL-GKADLDK-------MHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~~~~~-~~~~~~~-------~~~~~ 259 (866)
.+++|+|..|+|||||.+.+..-. ....+.+++.-.. ...... +.+.+... +.+.... .+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcCHHH
Confidence 489999999999999999999731 2233333332110 011111 11111111 1110000 11122
Q ss_pred -HHHHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEecchhhhh
Q 038220 260 -MKEELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPD-AKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 260 -~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~ 313 (866)
..-.+...+..++-++++|+.... .....+...+.. ...|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222455556677789999986532 222233332221 123667888887766544
No 310
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.37 E-value=0.017 Score=63.28 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++||++.++.+...+..++ -|.|.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 468999999999998888776 788999999999999999997
No 311
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.36 E-value=0.02 Score=57.78 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.9
Q ss_pred CceEEEEEEccCCChHHHHHHHHhc
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
....+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 312
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.074 Score=50.32 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+.|.+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999986
No 313
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.33 E-value=0.16 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.32 E-value=0.1 Score=57.19 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+.++.++|.+|+||||.|..++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999877765
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.32 E-value=0.012 Score=53.32 Aligned_cols=21 Identities=48% Similarity=0.746 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 038220 192 ISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~ 212 (866)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 316
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.32 E-value=0.037 Score=55.36 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhhh-ccCCcHHHHHHHHHHHHhhhchHHHHHHHH
Q 038220 4 FIVSLLIEKIATQLMEEAISFSRVRNQIEWIEGELKRMQCFLKDADA-QQDSDERVRNWVADVRDVAYDTEDVIDSYI 80 (866)
Q Consensus 4 ~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~-~~~~~~~~~~wl~~l~d~~yd~ed~ld~~~ 80 (866)
|-|..++..+-++.......+.-++.++|-++.+++.+|.||+.... ....-+.......++-..||++|+++|...
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 45667778888888777788888999999999999999999998744 333334489999999999999999999763
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.29 E-value=0.071 Score=52.19 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCcccc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDK 254 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~ 254 (866)
..+.+..+.... -++..|.|.+|.||||+++.+... .... ...+.+.....--... +.+..... .
T Consensus 6 Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~------a 70 (196)
T PF13604_consen 6 QREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE------A 70 (196)
T ss_dssp HHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS-------E
T ss_pred HHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc------h
Confidence 334444443332 258889999999999999988762 2222 2233333333222222 22222111 0
Q ss_pred CCHHHHHHHHHHHh-------------ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc
Q 038220 255 MHMEDMKEELSNFL-------------QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 255 ~~~~~~~~~l~~~L-------------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
.. +..++ ..++-+||+|++.-. ..+..+....+. .|+++|+.--.
T Consensus 71 ~T-------i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 71 QT-------IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp EE-------HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred hh-------HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 00 00010 123459999998654 456677766654 56788876543
No 318
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.43 Score=55.14 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=95.4
Q ss_pred CCCeeechhhHH---HHHHHHhcCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMM---ILGNRVIHGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~---~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
-.++.|-++.++ ++++.|..++ .-++=+.++|++|.|||-||++++... .+-++.++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-------gVPF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-------CCceeeechH----
Confidence 346788776555 5555565532 236778999999999999999999842 2345555543
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh-----------------hhHHHHHhhCCCC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK-----------------EAWDDLKAVFPDA 296 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~~ 296 (866)
+.++-+.+.+ ...++.+.... ...+.+|.+|+++.. ..++++..-+...
T Consensus 379 ----EFvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ----EFVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ----HHHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 1222222210 11122222221 245788888887521 1244444444433
Q ss_pred CCCcEEE-E-Eecchhhhh--ccCC--CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch
Q 038220 297 KNGSRII-F-TTRFKDVAV--YADP--GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP 369 (866)
Q Consensus 297 ~~gs~ii-v-TtR~~~v~~--~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (866)
..+..|| + +|...++.. .+.+ -...+.++.-+.....++|..++-.-. ...+..++.+ |+...-|.+
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~-----~~~e~~dl~~-~a~~t~gf~ 518 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK-----LDDEDVDLSK-LASLTPGFS 518 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC-----CCcchhhHHH-HHhcCCCCc
Confidence 3333233 3 343333322 1122 225677777788888889988775432 1123345555 777777766
No 319
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0011 Score=64.93 Aligned_cols=77 Identities=27% Similarity=0.283 Sum_probs=42.2
Q ss_pred CceEEEecCCCCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc--ccccCCCCccEEecCCC
Q 038220 545 RVRSLLFFDISEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP--SSMGNLFNLQSLDLSST 622 (866)
Q Consensus 545 ~lr~L~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~ 622 (866)
+++.|.+.++.-...+++.+++.|.||.|+-|.+..+. .+..+..|+.|.|+.|.|..+- ..+.+|++|++|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 44445555552222345566666666666666665442 3455666666666666665443 24555666666666554
No 320
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.27 E-value=0.054 Score=60.89 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=47.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
.-+++.++|++|+||||||.-++++ ..|. ++=|..|..-+...+-..|...+... ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEINASDeRt~~~v~~kI~~avq~~------------------s~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEINASDERTAPMVKEKIENAVQNH------------------SV 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh----cCce-EEEecccccccHHHHHHHHHHHHhhc------------------cc
Confidence 4689999999999999999999984 2232 55666666655544444443333221 11
Q ss_pred h--ccCcEEEEEecCCCh
Q 038220 268 L--QERRFIIVLDDIWEK 283 (866)
Q Consensus 268 L--~~k~~LlVlDdv~~~ 283 (866)
+ .+++.-+|+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 1 146777999999754
No 321
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.24 E-value=0.21 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5999999999999999999986
No 322
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.084 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 323
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.23 E-value=0.18 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 324
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.19 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.21 E-value=0.048 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999999873
No 326
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.20 E-value=0.073 Score=54.02 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=54.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccc--cCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcC---------CCCccccCCH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDV--KKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGL---------GKADLDKMHM 257 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~---------~~~~~~~~~~ 257 (866)
.-++|.|-.|+|||+|+.++.++... +.+-+.++++-+.+..+ ..++..++...-... .++.......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 47799999999999999998875321 12346788888887654 344444444321111 0000000011
Q ss_pred HHHHHHHHHHhc---cCcEEEEEecCCC
Q 038220 258 EDMKEELSNFLQ---ERRFIIVLDDIWE 282 (866)
Q Consensus 258 ~~~~~~l~~~L~---~k~~LlVlDdv~~ 282 (866)
.-..-.+.+++. ++++|+++||+..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 111223455553 6899999999854
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.4 Score=53.10 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=72.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
+.-|.++|++|.|||-||+.|+|. .+-.| ++|-.. +++...-+. +...+.....+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVGE--------SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVGE--------SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhhh--------HHHHHHHHHHHhh
Confidence 567889999999999999999994 44444 334332 122222121 1122333333333
Q ss_pred ccCcEEEEEecCCCh-------h------hHHHHHhhCCC--CCCCcEEEEEecchhhhh--ccCCC--CCCeeccCCCh
Q 038220 269 QERRFIIVLDDIWEK-------E------AWDDLKAVFPD--AKNGSRIIFTTRFKDVAV--YADPG--SPPYELCLLNE 329 (866)
Q Consensus 269 ~~k~~LlVlDdv~~~-------~------~~~~l~~~l~~--~~~gs~iivTtR~~~v~~--~~~~~--~~~~~l~~L~~ 329 (866)
...+++|.||.++.. . ...++.--+.. ...|--||-.|...++.. .+.++ ...+-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 467999999998642 1 22334433332 234554555554444322 12222 24566676777
Q ss_pred HHHHHHHHHHHh
Q 038220 330 EDSCELLFKKAF 341 (866)
Q Consensus 330 ~~~~~Lf~~~~~ 341 (866)
+|-.++++..+-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 888888877765
No 328
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.058 Score=58.53 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=50.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHHHHHHHHhcC------CCCcc---ccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK-WEILQDLCKKVLGL------GKADL---DKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~~~~~------~~~~~---~~~~~~~ 259 (866)
..++|+|..|+|||||++.+.+. ...+.++.+-+.+.... .++..+++..-... ...+. .......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 57999999999999999999873 12245666667665432 33444433221110 00000 0000111
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++++|+++||+..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHH
Confidence 122344454 58899999999853
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.20 E-value=0.21 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999874
No 330
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.17 E-value=0.099 Score=55.00 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK----KHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
+.|..+=+.-+++-|+|.+|+|||+|+.+++-..... ..=..++|++....|+.+++.+ +++.+.
T Consensus 87 ~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred HHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 3444443345799999999999999998876321111 1123689999999888877654 455443
No 331
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.16 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
-.|+|+|++|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999985
No 332
>PTZ00035 Rad51 protein; Provisional
Probab=95.17 E-value=0.17 Score=54.02 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 179 GNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVK----KHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 179 ~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-+.|..+=+.-.++.|+|.+|+|||||+..++-....- ..-..++|++....|+.+++ .++++..
T Consensus 108 D~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 108 DKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred HHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 33444443346799999999999999999887532210 11234779998887777663 3444443
No 333
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.036 Score=53.83 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=43.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
...+|+|.|.+|+||||+|+.++.. .... .+.-++-..-+...+ .....+.... .-......+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~--~~~~I~~D~YYk~~~-~~~~~~~~~~-n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVE--KVVVISLDDYYKDQS-HLPFEERNKI-NYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcC--cceEeeccccccchh-hcCHhhcCCc-CccChhhhcHHHHHHHHHHH
Confidence 4679999999999999999999983 3322 122222111111000 0000000000 11122345677788888888
Q ss_pred hccCc
Q 038220 268 LQERR 272 (866)
Q Consensus 268 L~~k~ 272 (866)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 334
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0012 Score=64.84 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=73.5
Q ss_pred CCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccc--ccccccccccEEec
Q 038220 565 YKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIP--LVIWKMQQLKHVYF 642 (866)
Q Consensus 565 ~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l 642 (866)
+.+.+-|++.||.+..+. .+.+|+.|+.|.|+-|.|+.|- .+..|.+|+.|.|+.|.+..+- ..+.++++|+.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345677888898886553 3567999999999999999885 5778999999999988666553 35778899999988
Q ss_pred cCccccccCCCC-----CCCCCCCceecce
Q 038220 643 SEFREMVVNPPA-----DASLPNLQTLLGI 667 (866)
Q Consensus 643 ~~~~~~~~~p~~-----~~~l~~L~~L~~~ 667 (866)
..|...+..+.. +.-|+||+.|+-.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCc
Confidence 877655333322 3345666666543
No 335
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.13 E-value=0.2 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999874
No 336
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.11 E-value=0.015 Score=45.79 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 337
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.10 E-value=0.0095 Score=58.60 Aligned_cols=61 Identities=26% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCceEEEEEee--cCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCC
Q 038220 734 PNLTELSLQFC--FLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLC 794 (866)
Q Consensus 734 ~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 794 (866)
++|++|.++.| +...........+|+|++|++++|.+....-......+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 45555555554 22222222223345555555555444321112223334444444444443
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.10 E-value=0.093 Score=53.83 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=48.4
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC----CCCccccCCHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL----GKADLDKMHMEDMKEE 263 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~ 263 (866)
+..++.|+|.+|+|||||+..+.+. ...... ++.+ .....+..+ .+.++..+.. .....-..+...+...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 4789999999999999999999883 333332 2222 222222221 1122222211 1111122344455555
Q ss_pred HHHHhccCcEEEEEecCCC
Q 038220 264 LSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 264 l~~~L~~k~~LlVlDdv~~ 282 (866)
+..+-....=++|++++.+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 6555444556788999854
No 339
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.24 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 340
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.07 E-value=0.027 Score=50.46 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+.+++.+.+...-..-.+|.+.|.-|+||||+++.++..
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 444444444432112348999999999999999999985
No 341
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.06 E-value=0.083 Score=52.14 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=49.1
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceE-------EEEeCCCCCHHHH--HHHHHHHHhcCCCCcc-----
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCA-------WAYVSQEYRKWEI--LQDLCKKVLGLGKADL----- 252 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-------wv~v~~~~~~~~~--~~~i~~~~~~~~~~~~----- 252 (866)
+++..|.++||+|+||||+.|+++.+..-++.-..++ -+......++.+. .++.+++......+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3467889999999999999999987422222111121 1122233344433 4566666554322211
Q ss_pred -ccCCHHHHHHHHHHHhccCcEEEEEecC
Q 038220 253 -DKMHMEDMKEELSNFLQERRFIIVLDDI 280 (866)
Q Consensus 253 -~~~~~~~~~~~l~~~L~~k~~LlVlDdv 280 (866)
-....+++++.+.+.-..-+| +++|--
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~-~liDTP 124 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDY-VLIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCE-EEEcCC
Confidence 122445666666655434344 445543
No 342
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.05 E-value=0.02 Score=56.81 Aligned_cols=25 Identities=44% Similarity=0.703 Sum_probs=22.3
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999873
No 343
>PRK06547 hypothetical protein; Provisional
Probab=95.02 E-value=0.03 Score=53.32 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...+|.|.|.+|+||||+|+.+...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 344
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.00 E-value=0.03 Score=57.67 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+++.+.... +-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhcc
Confidence 34566665554 46689999999999999998863
No 345
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.2 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+++|+|..|+|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 346
>PRK08233 hypothetical protein; Provisional
Probab=94.98 E-value=0.019 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 347
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.98 E-value=0.053 Score=57.79 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=38.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999998888876433345688999999999999999986
No 348
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.97 E-value=0.13 Score=51.73 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=31.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
-.++.|.|.+|+||||+|.++... ..+.. ..+++++. ..+..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 359999999999999998666543 22222 34667663 33456666665
No 349
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.97 E-value=0.056 Score=57.99 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCceEEEEEEccCCChHHHHHHHHhcCccccCCC---CceEEEEe-CC
Q 038220 166 EDIVGLGEDMMILGNRVIHG------------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF---DCCAWAYV-SQ 229 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~v-~~ 229 (866)
..++|.++.++.+.-.+... +...+.|.++|++|+|||++|+.+... ....| +..-+... ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 46788888887776555431 112468899999999999999999883 33333 22212211 12
Q ss_pred CCCHHHHHHHHHHHH
Q 038220 230 EYRKWEILQDLCKKV 244 (866)
Q Consensus 230 ~~~~~~~~~~i~~~~ 244 (866)
..+.+.+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 224556666655544
No 350
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.97 E-value=0.033 Score=54.74 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=57.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL- 268 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L- 268 (866)
+++.|.|+.|.||||+.+.+.... +-.+. ..+|.... ..-.++..|...+...+...........-..++...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 689999999999999999887421 11011 11111110 0111222222222211000000000011111122222
Q ss_pred -ccCcEEEEEecCCC---hhh----HHHHHhhCCCCCCCcEEEEEecchhhhhccC
Q 038220 269 -QERRFIIVLDDIWE---KEA----WDDLKAVFPDAKNGSRIIFTTRFKDVAVYAD 316 (866)
Q Consensus 269 -~~k~~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~ 316 (866)
..++-|+++|.... ..+ ...+...+.. .++.+|++|-..+++....
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 35788999999743 211 1223333332 2788999999888877654
No 351
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.95 E-value=0.082 Score=62.86 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=38.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|+...+..+.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 47999999999888777653333457889999999999999999874
No 352
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.95 E-value=0.13 Score=47.81 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=59.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC---CCCHHHHHHHHHHHHhcC-----CCC-ccccCCHH--
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ---EYRKWEILQDLCKKVLGL-----GKA-DLDKMHME-- 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~~~~~-----~~~-~~~~~~~~-- 258 (866)
..|-|++..|.||||+|.-..- +...+=-.+.++-.-+ ....... ++.+... +.. .....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~----l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKA----LERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHH----HHhCCCcEEEECCCCCccCCCChHHH
Confidence 4678889999999999977665 2222212233332222 2222222 2222111 000 00000111
Q ss_pred -----HHHHHHHHHhcc-CcEEEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecchh
Q 038220 259 -----DMKEELSNFLQE-RRFIIVLDDIWEK-----EAWDDLKAVFPDAKNGSRIIFTTRFKD 310 (866)
Q Consensus 259 -----~~~~~l~~~L~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (866)
+..+..++.+.. +-=|+|||++-.. -..+.+...+.....+..+|+|.|+..
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122233444433 4459999998543 244566666666666778999999754
No 353
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.95 E-value=0.52 Score=43.17 Aligned_cols=107 Identities=6% Similarity=0.175 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhhhcc-CCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038220 3 EFIVSLLIEKIATQLMEEAISFSRVRNQIEWIEGELKRMQCFLKDADAQQ-DSDERVRNWVADVRDVAYDTEDVIDSYIF 81 (866)
Q Consensus 3 ~~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~wl~~l~d~~yd~ed~ld~~~~ 81 (866)
.||++.+++.+...+.+........+.-++.|...+..|.-++.+.+... .-|..-+.=++++.+..-+++++++.|..
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk 87 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777777777777777777888889999999999999999988753 22333367788888999999999987631
Q ss_pred HhhhcccccchhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHh
Q 038220 82 KMAQKREKGLIRALFKRYPFVFFDEFSARRKVNKQISRIKMRIHDISS 129 (866)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~ 129 (866)
+ + .+++...++.+++|+++.+.+.....
T Consensus 88 -------------~-~------r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 88 -------------V-R------RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred -------------c-c------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 0 1 11333446667777777777765433
No 354
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.94 E-value=0.082 Score=55.02 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=26.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVS 228 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 228 (866)
.+++.|+|++|+||||++..++.....+..-..+..++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4699999999999999998887632212111235566544
No 355
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.94 E-value=0.25 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999974
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.93 E-value=0.02 Score=56.99 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=22.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999974
No 357
>PTZ00301 uridine kinase; Provisional
Probab=94.92 E-value=0.024 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998876
No 358
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.92 E-value=0.037 Score=57.98 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=23.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++.+.|+|++|.|||.+|+.+++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999984
No 359
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.082 Score=57.63 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=50.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHHHHHHHHhcCCC----CccccCCH-----H
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK-WEILQDLCKKVLGLGK----ADLDKMHM-----E 258 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~~~~~~~----~~~~~~~~-----~ 258 (866)
-..++|+|..|+|||||++.+++.. ..+.++++-+.+.... .+...+.+..-..... ...+.... .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 3588999999999999999999742 1244556667665432 2333333332111100 00011111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEecCCC
Q 038220 259 DMKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 259 ~~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
...-.+.+++ +++.+|+++||+..
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122344555 58899999999954
No 360
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.90 E-value=0.061 Score=59.14 Aligned_cols=91 Identities=19% Similarity=0.312 Sum_probs=53.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcC---------CCCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGL---------GKADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~---------~~~~~~~~~~~~ 259 (866)
..++|.|.+|+|||||+.++.++.. +.+-+.++++-+.+... ..++..++...-... ..+.........
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 5789999999999999998887532 23557788887776543 334444443321110 000000111112
Q ss_pred HHHHHHHHh--c-cCcEEEEEecCC
Q 038220 260 MKEELSNFL--Q-ERRFIIVLDDIW 281 (866)
Q Consensus 260 ~~~~l~~~L--~-~k~~LlVlDdv~ 281 (866)
..-.+.+++ + ++++|+++||+.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 222455565 3 789999999984
No 361
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.90 E-value=0.15 Score=51.77 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
+.|..+=+.-+++.|.|.+|+|||++|.++... .. ..-+.++|++... +..++.+.+
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 334444334579999999999999999887652 12 2345688888765 455555543
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.039 Score=50.13 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=31.9
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL 247 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 247 (866)
+|.|-|.+|+||||+|+.+.++.... . + +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~--v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L--V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e--e----eccHHHHHHHHHcCCC
Confidence 68999999999999999999842111 1 1 2346788888876653
No 363
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.85 E-value=0.058 Score=59.06 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=52.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCH-----HH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHM-----ED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~-----~~ 259 (866)
..++|.|.+|+|||||+.++..+... .+=+.++++-+.+... ..+++.++...-..... ...+.... ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988764221 1124577777776543 34444444432111100 00011111 12
Q ss_pred HHHHHHHHh---ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL---QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L---~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++++|+++|++..
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 222456666 57899999999843
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.18 Score=54.08 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=45.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-YRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
.++.++|+.|+||||++.++......+.....+..++.... ....+-++...+.+... . ....+..++...+.+ +
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~-~--~~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-V--HAVKDGGDLQLALAE-L 213 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc-e--EecCCcccHHHHHHH-h
Confidence 58999999999999999998873211111234555553331 22334444444444332 1 011111223333333 3
Q ss_pred ccCcEEEEEecCCC
Q 038220 269 QERRFIIVLDDIWE 282 (866)
Q Consensus 269 ~~k~~LlVlDdv~~ 282 (866)
.++ -++++|....
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 344 5566998853
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.16 Score=52.35 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=27.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVS 228 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 228 (866)
..+++.++|++|+||||.+..++.. ....-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC
Confidence 4689999999999999988888763 22222345666544
No 366
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.019 Score=54.87 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+|+|-||-|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 368999999999999999999984
No 367
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.80 E-value=0.11 Score=55.31 Aligned_cols=40 Identities=35% Similarity=0.418 Sum_probs=27.6
Q ss_pred eEEEEEEccCCChHHH-HHHHHhcCccccCCCCceEEEEeCC
Q 038220 189 RSVISIIGMAGLGKTT-LAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
-+++.+||+.|+|||| ||+..+.-....++ ..+..++...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEecc
Confidence 5899999999999995 77777763211222 3467776654
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.79 E-value=0.096 Score=56.48 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCH
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHM 257 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 257 (866)
+.|..+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++.... ..++. .-++.+...... -....+.
T Consensus 73 ~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~l 147 (372)
T cd01121 73 RVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNL 147 (372)
T ss_pred HhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcH
Confidence 334333223469999999999999999998863 2222345778766443 33322 122233221110 0112234
Q ss_pred HHHHHHHHHHhccCcEEEEEecC
Q 038220 258 EDMKEELSNFLQERRFIIVLDDI 280 (866)
Q Consensus 258 ~~~~~~l~~~L~~k~~LlVlDdv 280 (866)
+++.+.+.+ .+.-++|+|.+
T Consensus 148 e~I~~~i~~---~~~~lVVIDSI 167 (372)
T cd01121 148 EDILASIEE---LKPDLVIIDSI 167 (372)
T ss_pred HHHHHHHHh---cCCcEEEEcch
Confidence 444444432 35667888887
No 369
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.78 E-value=0.24 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 370
>PRK06762 hypothetical protein; Provisional
Probab=94.76 E-value=0.023 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 371
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.76 E-value=0.23 Score=49.94 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 372
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=1.6 Score=45.65 Aligned_cols=152 Identities=7% Similarity=0.036 Sum_probs=87.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCc--------cccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSS--------DVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDM 260 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 260 (866)
..+..++|..|.||+++|..+.+-. ....|-+-..++..... ....+++
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~-----------------------~i~vd~I 74 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK-----------------------DLSKSEF 74 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC-----------------------cCCHHHH
Confidence 3577799999999999998887621 00111111222211011 1122333
Q ss_pred HHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc-hhhhhccCCCCCCeeccCCChHHH
Q 038220 261 KEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF-KDVAVYADPGSPPYELCLLNEEDS 332 (866)
Q Consensus 261 ~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~l~~L~~~~~ 332 (866)
.+.+...- .+++-++|+|++... .....+...+......+.+|++|.+ ..+..-.......+++.+++.++.
T Consensus 75 r~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l 154 (299)
T PRK07132 75 LSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKI 154 (299)
T ss_pred HHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHH
Confidence 32222210 147778899998765 3567788888777777777776643 333322233347899999999998
Q ss_pred HHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 333 CELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 333 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
.+.+... +.. .+.+..++...+|.--|+..+
T Consensus 155 ~~~l~~~--~~~----------~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 155 LAKLLSK--NKE----------KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHHc--CCC----------hhHHHHHHHHcCCHHHHHHHH
Confidence 8777653 111 244566666677633455543
No 373
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.71 E-value=0.012 Score=57.86 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=49.2
Q ss_pred cCCCCceEEEeeCCCCccccccccCCCCccEEecCCC--c-cccccccccccccccEEeccCccccccCCCC---CCCCC
Q 038220 586 GNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSST--L-VDPIPLVIWKMQQLKHVYFSEFREMVVNPPA---DASLP 659 (866)
Q Consensus 586 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~--~-~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---~~~l~ 659 (866)
-.+..|.+|++.++.++.+- .+-.|++|++|+++.| . ...++.-..++++|++|++++|+.- .+.. +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhc
Confidence 34556777777766654332 2226788999999888 2 3345555567799999999888653 1222 33444
Q ss_pred CCceecceee
Q 038220 660 NLQTLLGICI 669 (866)
Q Consensus 660 ~L~~L~~~~~ 669 (866)
+|..|+++.|
T Consensus 117 nL~~Ldl~n~ 126 (260)
T KOG2739|consen 117 NLKSLDLFNC 126 (260)
T ss_pred chhhhhcccC
Confidence 4555555554
No 374
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.71 E-value=0.31 Score=49.40 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
.+.|+|-..- .++..++......-+.+.|+|+.|+|||+-++.+++. ......+..+..++...+...+....
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~ 143 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAA 143 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHH
Confidence 3455554332 2233333332222348899999999999999999983 22234445666677777776666665
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPD 295 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~ 295 (866)
... ...........+...+.+..-+++.|+.... ..++.++.....
T Consensus 144 ~~~-----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 144 FGA-----TDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred hcc-----cchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 554 2224455666677777888889999998764 567777765443
No 375
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.54 Score=45.92 Aligned_cols=47 Identities=30% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++-|.+-.++++.+...- +-..++-|.++|++|.|||.||+.|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4556666666666555421 1123677889999999999999999995
No 376
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.69 E-value=0.14 Score=54.63 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=34.7
Q ss_pred eeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 168 IVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777777654333456889999999999999999864
No 377
>PRK08149 ATP synthase SpaL; Validated
Probab=94.68 E-value=0.11 Score=56.56 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=49.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhcC---------CCCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKKVLGL---------GKADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~ 259 (866)
..++|+|..|+|||||++.+++.. .-+.++...+.... +..++..+........ ..+.........
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 488999999999999999999742 22333334444332 3444444444432211 001111111112
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
....+.+++ +++++|+++||+..
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 222344444 58999999999853
No 378
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.68 E-value=0.2 Score=51.06 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 379
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.68 E-value=0.12 Score=56.67 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=52.5
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccc-----cCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC-----ccccCCHH
Q 038220 190 SVISIIGMAGLGKTTLA-KKMYQSSDV-----KKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA-----DLDKMHME 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~ 258 (866)
.-++|.|..|+|||+|| ..+.+...+ .++-..++++.+++..+.-.-+.+.+++-+..... ..++....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 47899999999999997 666765322 12345688888888754433333444333311000 00111111
Q ss_pred H-----HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 259 D-----MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 259 ~-----~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
+ ..-.+.+++ +++.+|+|+||+..
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 111233344 57899999999854
No 380
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.49 Score=51.22 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=53.0
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCcccc--CCCCceEEEEeCCCCCHHH--HHHHHHHHHhcCCCCccccCCHHHHHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVK--KHFDCCAWAYVSQEYRKWE--ILQDLCKKVLGLGKADLDKMHMEDMKEE 263 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~v~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 263 (866)
..+++.++|+.|+||||.+..++...... .+-..+..+++.. +.... .++...+.+.. +-......+++...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgv---pv~~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGI---PVKAIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCc---ceEeeCcHHHHHHH
Confidence 35799999999999999988887632111 1112355555543 33222 23333332222 11112233455555
Q ss_pred HHHHhccCcEEEEEecCCCh----hhHHHHHhhCC
Q 038220 264 LSNFLQERRFIIVLDDIWEK----EAWDDLKAVFP 294 (866)
Q Consensus 264 l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~l~ 294 (866)
+.+. ...-+|++|..... ..+..+...+.
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 5443 44568889987532 23445554444
No 381
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.66 E-value=0.27 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|.|..|+|||||++.+...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 382
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.63 E-value=0.39 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+..-
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 383
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.63 E-value=0.31 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 384
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.63 E-value=0.13 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.|.++|.+|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 385
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.62 E-value=0.16 Score=51.61 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=53.2
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccCCCCce-EEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCHHH---
Q 038220 190 SVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDCC-AWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHMED--- 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~~--- 259 (866)
.-++|.|..|+|||+|| ..+.+. .+-+.+ +++.+.+... ..++.+++...-..... ...++.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999996 666653 123443 7777776643 33444444432111000 0001111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecCCCh-hhHHHHHhh
Q 038220 260 --MKEELSNFL--QERRFIIVLDDIWEK-EAWDDLKAV 292 (866)
Q Consensus 260 --~~~~l~~~L--~~k~~LlVlDdv~~~-~~~~~l~~~ 292 (866)
..-.+.+++ +++.+|+++||+... +.|.++...
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 112233333 478999999999654 445555433
No 386
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.62 E-value=0.2 Score=55.75 Aligned_cols=124 Identities=21% Similarity=0.283 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHH-HHHHHhcCccccCCCCceEEEEeCCCCCH--HHHHHHHHHHHhcC-CC--
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTT-LAKKMYQSSDVKKHFDCCAWAYVSQEYRK--WEILQDLCKKVLGL-GK-- 249 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~~~~~-~~-- 249 (866)
++|++.+.+. .||.|+|..|+|||| |+|.+|.+ .|..--.|-+.+.-.+ ..+.+.+.+++... +.
T Consensus 362 ~~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 362 DQLLSVIREN----QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred HHHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 3445544443 599999999999998 88999885 2322224444444333 34555666666432 10
Q ss_pred ------Ccccc--------CCHHHHHHHHHHHhccCcEEEEEecCCChh-----hHHHHHhhCCCCCCCcEEEEEecch
Q 038220 250 ------ADLDK--------MHMEDMKEELSNFLQERRFIIVLDDIWEKE-----AWDDLKAVFPDAKNGSRIIFTTRFK 309 (866)
Q Consensus 250 ------~~~~~--------~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~iivTtR~~ 309 (866)
.+... .+.--+.+.|.+..-.|=-.||+|.+++.. -+.-++..+. ....-|+||||-.-
T Consensus 433 GYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm 510 (1042)
T KOG0924|consen 433 GYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATM 510 (1042)
T ss_pred ceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeeccc
Confidence 01110 111223333444433455689999997653 1233333333 23367899999643
No 387
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.59 E-value=0.18 Score=57.99 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=40.3
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999888764333456789999999999999999974
No 388
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.58 E-value=0.088 Score=49.89 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=33.1
Q ss_pred eeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 168 IVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 168 ~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+||....+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888887663222345669999999999999999984
No 389
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.57 E-value=0.076 Score=58.02 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=54.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcC---------CCCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGL---------GKADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~---------~~~~~~~~~~~~ 259 (866)
.-++|.|.+|+|||+|+.++.++.. +.+-+.++++-+.+..+ ..++.+++...-... ..+.........
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999999887522 23346788888877654 334444444321110 000000111112
Q ss_pred HHHHHHHHhc---cCcEEEEEecCCC
Q 038220 260 MKEELSNFLQ---ERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L~---~k~~LlVlDdv~~ 282 (866)
..-.+.++++ ++++|+++||+..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2234566664 5899999999854
No 390
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.57 E-value=0.053 Score=53.09 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=45.8
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCC--------CceEEEEeCCCCCHHHHHHHHHHHHhcCCC-------------
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHF--------DCCAWAYVSQEYRKWEILQDLCKKVLGLGK------------- 249 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------------- 249 (866)
++.|+|.+|+||||++..+.........| ..++|+..... ...+.+.+.........
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~ 111 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNWG 111 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccccc
Confidence 88999999999999998887642222112 35788876665 33333333222211100
Q ss_pred ------CccccCCHHHHHHHHHHHhcc--CcEEEEEecCC
Q 038220 250 ------ADLDKMHMEDMKEELSNFLQE--RRFIIVLDDIW 281 (866)
Q Consensus 250 ------~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~ 281 (866)
........+...+.+.+.+.. +.-++|+|.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 112 CIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred cceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 000001124455666666654 46799999764
No 391
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.55 E-value=0.09 Score=51.84 Aligned_cols=47 Identities=30% Similarity=0.481 Sum_probs=33.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDL 240 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i 240 (866)
.-++|.|.+|+|||+|+.++.++. .-+..+++.+.+... ..++.+++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHH
Confidence 378899999999999999998852 234458888876532 33444444
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.54 E-value=0.075 Score=54.83 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=38.5
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
+.-+++.|+|.+|+|||++|.++.. ....+...++||+..+. ..++.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 3467999999999999999999887 34555788999988775 44444443
No 393
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.52 E-value=0.24 Score=58.05 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 394
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.49 E-value=0.37 Score=50.10 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=37.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
.++.|.|.+|+||||++.++.... ...+-..++|++... +..++...+...+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHhC
Confidence 488899999999999999887642 222234588887765 456666666655443
No 395
>PRK03839 putative kinase; Provisional
Probab=94.49 E-value=0.027 Score=54.50 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 396
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.47 E-value=0.28 Score=57.51 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCeeechhhHHHHHHHHh---cCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 038220 166 EDIVGLGEDMMILGNRVI---HGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWE 235 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 235 (866)
.++.|.+...+++.+.+. ... .-.+-+.|+|++|.|||++|+.+.+. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 356676666655544432 210 11345999999999999999999883 22222 2222111
Q ss_pred HHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh------------hhHH----HHHhhCCC--CC
Q 038220 236 ILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK------------EAWD----DLKAVFPD--AK 297 (866)
Q Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~----~l~~~l~~--~~ 297 (866)
+ .....+. ....+...+...-...+.+|++|+++.. ..+. .+...+.. ..
T Consensus 221 ~----~~~~~g~--------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 221 F----VEMFVGV--------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred h----HHhhhcc--------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 1 1111111 1122333333333456889999998642 1122 22222221 12
Q ss_pred CCcEEEEEecchhhhh-cc-C--CCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 298 NGSRIIFTTRFKDVAV-YA-D--PGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 298 ~gs~iivTtR~~~v~~-~~-~--~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
.+.-+|.||...+... .. . .....+.+..-+.++-.+++..+...
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 3344455665544222 11 1 11256677777777777777766543
No 397
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.46 E-value=0.025 Score=67.13 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 038220 54 SDERVRNWVADVRDVAYDTEDVIDSYIFK 82 (866)
Q Consensus 54 ~~~~~~~wl~~l~d~~yd~ed~ld~~~~~ 82 (866)
-++.+..+-++++.+--++.+.++.+...
T Consensus 144 aS~~L~~ir~~~~~~~~~i~~~l~~~~~~ 172 (771)
T TIGR01069 144 ASEELDAIRESLKALEEEVVKRLHKIIRS 172 (771)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778889899998888888888887653
No 398
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.46 E-value=0.27 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 399
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.46 E-value=0.15 Score=53.50 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=47.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhcC------C---CCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-YRKWEILQDLCKKVLGL------G---KADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~------~---~~~~~~~~~~~ 259 (866)
..++|+|..|+|||||.+.+.+... -+..+...+... -...+...+....-... . .+.........
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999997422 233344444433 23344444443321111 0 00001111111
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++.+|+++||+..
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchH
Confidence 222334444 58899999999843
No 400
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.45 E-value=0.06 Score=49.46 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=29.7
Q ss_pred EEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
|.|+|.+|+|||+||+.++.- .. ....-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEecccccccccee
Confidence 679999999999999999983 21 1244566777777666554
No 401
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.44 E-value=0.27 Score=45.64 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 402
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.44 E-value=0.48 Score=46.94 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|.|..|.|||||++.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 403
>PRK05922 type III secretion system ATPase; Validated
Probab=94.43 E-value=0.15 Score=55.55 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=48.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhcCC------CCc---cccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKKVLGLG------KAD---LDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~~------~~~---~~~~~~~~ 259 (866)
..++|+|..|+|||||.+.+.+.. ..+....+.+++.. ...+.+.+......... ..+ ........
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999999742 22334444444432 22333433332221110 000 00001111
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++++|+++||+..
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 222345555 47899999999954
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.41 E-value=0.31 Score=49.22 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=29.6
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE 230 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 230 (866)
.-.++.|.|.+|+||||||.++... ..+ .-+.++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCC
Confidence 3479999999999999999987653 122 2346788876443
No 405
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.27 Score=51.33 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||.+.++.-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 406
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.39 E-value=0.29 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|+|+.|+|||||++.+..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 407
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.37 E-value=0.13 Score=56.22 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=49.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhcCCC----CccccCCHHH-----
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKKVLGLGK----ADLDKMHMED----- 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~~~----~~~~~~~~~~----- 259 (866)
..++|+|..|+|||||++.+.+.. +.+..++..+.+.. ...+.+.+....-..... ...+......
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 488999999999999999998742 34445666665543 233444443221000000 0001111111
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++++|+++||+..
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122344444 47899999999953
No 408
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.36 E-value=0.042 Score=50.27 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=27.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
++|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 48999999999999999999984 2335555555666665
No 409
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.36 E-value=0.15 Score=58.18 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE 230 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 230 (866)
...++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+..... ..-...+.|++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 46799999999999888877544456788999999999999999997421 11123455555543
No 410
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.15 Score=47.88 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.+++|+|..|.|||||++.+... . ....+.+++.-...... ........+... . . -..-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~-~-q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGYV-P-Q--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEEE-e-e--CCHHHHHHHHHHHHHh
Confidence 48999999999999999999984 2 23445555432211110 001111111111 0 0 0111222234555666
Q ss_pred cCcEEEEEecCCCh---hhHHHHHhhCCCC-CCCcEEEEEecchhhhhc
Q 038220 270 ERRFIIVLDDIWEK---EAWDDLKAVFPDA-KNGSRIIFTTRFKDVAVY 314 (866)
Q Consensus 270 ~k~~LlVlDdv~~~---~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 314 (866)
.++-++++|+.... .....+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67889999997532 2333333333211 124567888776655443
No 411
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.34 E-value=0.61 Score=43.56 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|++|.|||||...|+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 4899999999999999999986
No 412
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.33 E-value=0.047 Score=62.86 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
.-.+++|.++.++.+...+..+. .+.++|.+|+||||+|+.+... -...+++..+|..-+ ..+....++.+...
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~~----~~l~~G~~G~GKttla~~l~~~-l~~~~~~~~~~~~np-~~~~~~~~~~v~~~ 102 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQRR----HVMMIGSPGTGKSMLAKAMAEL-LPKEELQDILVYPNP-EDPNNPKIRTVPAG 102 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhCC----eEEEECCCCCcHHHHHHHHHHH-cChHhHHHheEeeCC-CcchHHHHHHHHHh
Confidence 34578999888888887776653 6889999999999999999874 223345777887653 33566667766654
Q ss_pred Hhc
Q 038220 244 VLG 246 (866)
Q Consensus 244 ~~~ 246 (866)
.+.
T Consensus 103 ~G~ 105 (637)
T PRK13765 103 KGK 105 (637)
T ss_pred cCH
Confidence 443
No 413
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.32 E-value=0.48 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 414
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.32 E-value=0.064 Score=47.09 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=34.3
Q ss_pred CCeeechhhHHHHHHHHhc----C-CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIH----G-GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|..-..+.+++.+.+ . .+.+-|++.+|.+|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4567766666665555543 2 446889999999999999988777764
No 415
>PRK04040 adenylate kinase; Provisional
Probab=94.30 E-value=0.033 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 416
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.28 E-value=0.14 Score=55.88 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=30.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY 231 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 231 (866)
..++|.|..|+|||||.+.+++.. .-+.++++.+.+..
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERg 200 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERG 200 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCc
Confidence 589999999999999999999852 23567787787764
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.28 E-value=0.1 Score=53.56 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=29.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
.-+++.|.|.+|+|||++|.++... ..+ .=+.+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence 4579999999999999999987653 122 234678888764
No 418
>PRK00625 shikimate kinase; Provisional
Probab=94.27 E-value=0.03 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.|.|+||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 419
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.27 E-value=0.52 Score=51.47 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999999987765
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.26 E-value=0.087 Score=56.61 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCCeeechhhHHHHHHHHhcC------------CCceEEEEEEccCCChHHHHHHHHhcCccccCCC---CceEEEEe-C
Q 038220 165 EEDIVGLGEDMMILGNRVIHG------------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF---DCCAWAYV-S 228 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~v-~ 228 (866)
...++|.++.++.+..++... +.....+.++|++|+||||+|+.+... ....| +..-|... -
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 356889999888888777431 112467899999999999999999873 33323 22212211 1
Q ss_pred CCCCHHHHHHHHHHHH
Q 038220 229 QEYRKWEILQDLCKKV 244 (866)
Q Consensus 229 ~~~~~~~~~~~i~~~~ 244 (866)
...+.+..++++....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1224566666666554
No 421
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.26 E-value=0.033 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.2 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++.++|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 423
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=3.7 Score=40.30 Aligned_cols=150 Identities=24% Similarity=0.312 Sum_probs=80.1
Q ss_pred Ceee-chhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 167 DIVG-LGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 167 ~~vG-r~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
++|| .+..+.+|.+.+.-+ -.+++-+.++|++|.|||-||+.|++ ...+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechH----
Confidence 4565 466666665554321 12467889999999999999999997 344667777764
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-cCcEEEEEecCCCh-------------hh---HHHHHhhCC--C
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-ERRFIIVLDDIWEK-------------EA---WDDLKAVFP--D 295 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~-------------~~---~~~l~~~l~--~ 295 (866)
++.+...+.+ ..+.+.+.-..+ .-+-.|..|.+++. +. .-.+...+. .
T Consensus 216 ----elvqk~igeg---------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 ----ELVQKYIGEG---------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred ----HHHHHHhhhh---------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2222222210 112222222222 34677888887532 11 112223333 2
Q ss_pred CCCCcEEEEEecchhhhhc--cCCC--CCCeeccCCChHHHHHHHHHHH
Q 038220 296 AKNGSRIIFTTRFKDVAVY--ADPG--SPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 296 ~~~gs~iivTtR~~~v~~~--~~~~--~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
..+.-+||+.|..-++... ..++ ..-++..+-+++.-.+++.-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2345678887755444321 1121 1445666666666666665543
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.25 E-value=0.042 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5999999999999999999984
No 425
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.23 E-value=0.11 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|+|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 48999999999999999999874
No 426
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.22 E-value=0.023 Score=49.99 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHhcCccccCCCC
Q 038220 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFD 220 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 220 (866)
|.|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4555554
No 427
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.49 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 59999999999999999999874
No 428
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.22 E-value=0.063 Score=53.69 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=19.0
Q ss_pred EEEEccCCChHHHHHHHHhc
Q 038220 192 ISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~ 211 (866)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.15 Score=53.86 Aligned_cols=98 Identities=23% Similarity=0.196 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCC--Cccc
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGK--ADLD 253 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~--~~~~ 253 (866)
.++-+.|..+--.-.++.|-|-+|+|||||.-++..+ ....- .++||+-.+. ..++ +--++.+..... .-..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEeh
Confidence 3344444443112369999999999999999999884 33333 6777765544 2222 112233332111 1123
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEecCCC
Q 038220 254 KMHMEDMKEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 254 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
..+.+++...+.+ .++-++|+|-++.
T Consensus 154 Et~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 4456666665555 5888999999853
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.18 E-value=0.035 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 431
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.18 E-value=0.049 Score=50.31 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=26.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEE
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAY 226 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 226 (866)
..||-|.|.+|+||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35899999999999999999998 4444434455554
No 432
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.18 E-value=0.041 Score=54.65 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
+..++++.+.....+..+|+|.|++|+|||||...+....+-+.+==.++-|+-|..++.-.++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 44556666665444568999999999999999988877322222212345555566666544444
No 433
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.17 E-value=0.051 Score=56.68 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=41.3
Q ss_pred CCCeeechhhHHHHHHHHhcC----CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 165 EEDIVGLGEDMMILGNRVIHG----GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...++|.++.++++++.+... +..-+++.++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999763 34579999999999999999999887
No 434
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.17 E-value=0.04 Score=54.43 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 181 RVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 181 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
|+.......+.+.|+|++|+|||||++.+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3344444578999999999999999999976
No 435
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.36 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 49999999999999999999863
No 436
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.16 E-value=0.36 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|.|..|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.14 E-value=0.26 Score=49.08 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999886
No 438
>PRK04328 hypothetical protein; Provisional
Probab=94.12 E-value=0.15 Score=52.02 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=30.7
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE 230 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 230 (866)
.-+++.|.|.+|+|||+||.++... .. ..-+.++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeCC
Confidence 3579999999999999999987653 22 22456788887664
No 439
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.12 E-value=0.37 Score=49.38 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||.+.++.-
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999874
No 440
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.12 E-value=0.038 Score=53.58 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999883
No 441
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.11 E-value=0.079 Score=53.40 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=52.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC-------------C-CCccc-
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL-------------G-KADLD- 253 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-------------~-~~~~~- 253 (866)
-+++.|.|.+|+|||+||.++... ..+..=+.++|++..+. .+++.+.+- .++.. . .....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 469999999999999999887652 12221345788877654 444444432 22110 0 00000
Q ss_pred --cCCHHHHHHHHHHHhcc-CcEEEEEecC
Q 038220 254 --KMHMEDMKEELSNFLQE-RRFIIVLDDI 280 (866)
Q Consensus 254 --~~~~~~~~~~l~~~L~~-k~~LlVlDdv 280 (866)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777777654 4578899986
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.09 E-value=0.057 Score=52.43 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccc
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLD 253 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~ 253 (866)
+...++....... ..+.|+|..|+||||+++.+..- +... ...+-+.-....... ..... ++.. ..+...
T Consensus 13 ~~~~~l~~~v~~g---~~i~I~G~tGSGKTTll~aL~~~--i~~~-~~~i~ied~~E~~~~--~~~~~-~~~~-~~~~~~ 82 (186)
T cd01130 13 LQAAYLWLAVEAR---KNILISGGTGSGKTTLLNALLAF--IPPD-ERIITIEDTAELQLP--HPNWV-RLVT-RPGNVE 82 (186)
T ss_pred HHHHHHHHHHhCC---CEEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEECCccccCCC--CCCEE-EEEE-ecCCCC
Confidence 3344444443332 48999999999999999998863 2221 122222100000000 00000 0000 000000
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhh
Q 038220 254 KMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAV 292 (866)
Q Consensus 254 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 292 (866)
........+.++..++..+=.++++.+.+.+.++.+...
T Consensus 83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 83 GSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred CCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 111123445566667777888999999988887766544
No 443
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.09 E-value=0.21 Score=50.91 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=37.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
-.++.|.|.+|+|||++|.++..+. ...+=..++|++... +..++...++.....
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~~~~ 67 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLASESG 67 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHHhcC
Confidence 3599999999999999999887642 222123577776655 466777776654433
No 444
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.06 E-value=0.11 Score=51.22 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=48.9
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN 266 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (866)
..+.++.|.|.+|+||||++..+... .. ....+.++...--...--..++... ...............+...+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~--~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEE--FG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHH--T---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhh--cc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998873 11 2345555432210000011122221 1110111111223445556666
Q ss_pred HhccCcEEEEEecCCCh-hhHHHHHhhCC
Q 038220 267 FLQERRFIIVLDDIWEK-EAWDDLKAVFP 294 (866)
Q Consensus 267 ~L~~k~~LlVlDdv~~~-~~~~~l~~~l~ 294 (866)
....+++=||+|..-.. +....+...+.
T Consensus 88 ~a~~~~~nii~E~tl~~~~~~~~~~~~~k 116 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSNPSKLRKLIREAK 116 (199)
T ss_dssp HHHHCT--EEEE--TTSSHHHHHHHHHHH
T ss_pred HHHHcCCCEEEecCCCChhHHHHHHHHHH
Confidence 66678888899987654 33443554444
No 445
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=94.06 E-value=0.17 Score=55.82 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=51.3
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCHH----
Q 038220 190 SVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDC-CAWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHME---- 258 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~---- 258 (866)
.-++|.|..|+|||||| ..+.+. ..-+. ++++.+.+..+ ..++..++...-..... ...+.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQ----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHh----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 57899999999999996 577774 23454 78888887643 33444444432111100 000111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEecCCC
Q 038220 259 -DMKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 259 -~~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
-....+.+++ +++.+|+|+||+..
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 1112244444 57899999999854
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.03 E-value=0.83 Score=42.05 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.|++|.||+||.+.+++
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 789999999999999999997
No 447
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.02 E-value=0.032 Score=54.92 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 448
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.00 E-value=0.12 Score=56.35 Aligned_cols=92 Identities=17% Similarity=0.298 Sum_probs=52.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCHH-----H
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHME-----D 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~-----~ 259 (866)
..++|.|.+|+|||||+.++..+.. ..+=..++++-+.+... ..+++.++...-..... ...+..... .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999886421 12224677777776543 34455544332111000 000111111 1
Q ss_pred HHHHHHHHh---ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL---QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L---~~k~~LlVlDdv~~ 282 (866)
..-.+.+++ +++++|+++||+..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhH
Confidence 223456666 36899999999854
No 449
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.00 E-value=0.039 Score=65.69 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++.|+|+.+.||||+.+.+.-
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHH
Confidence 57899999999999999998863
No 450
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.99 E-value=0.031 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 451
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.99 E-value=0.5 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999964
No 452
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.98 E-value=0.44 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 453
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.98 E-value=0.23 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999875
No 454
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.34 Score=55.11 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCeeechhhHHHHHHHHhcC----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWE 235 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 235 (866)
.++=|-++-+.+|.+.+.-. -...+=|.++|++|.|||-+|++|+.. |. .-|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecCH-----
Confidence 46778888888888776431 123567889999999999999999983 22 334555443
Q ss_pred HHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCC
Q 038220 236 ILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
+++.---+. +.+.+.+...+.-+.++++|.||.+++
T Consensus 740 ---ELLNMYVGq--------SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ--------SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc--------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 112211111 234455555555557899999999875
No 455
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.90 E-value=0.2 Score=53.00 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=49.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.|+|..|+|||||++.+... +... ..++.+.-..+..... .... .+.. .... .....-...+.+...|+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~--~~~~-~~iv~ied~~El~~~~--~~~~-~l~~-~~~~-~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE--IPKD-ERIITIEDTREIFLPH--PNYV-HLFY-SKGG-QGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc--CCcc-ccEEEEcCccccCCCC--CCEE-EEEe-cCCC-CCcCccCHHHHHHHHhc
Confidence 58999999999999999998863 2221 1222221111111000 0000 0000 0000 00111223445566677
Q ss_pred cCcEEEEEecCCChhhHHHHHhh
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAV 292 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~ 292 (866)
..+=.+|+|.+.+.+.++.+...
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~a~ 239 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIRAV 239 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHHHH
Confidence 78888999999988777655444
No 456
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.89 E-value=0.21 Score=54.97 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-..++|+|..|+|||||++.+.+.
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999874
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.87 E-value=0.22 Score=56.28 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
..+-+.|..+=..-+++.|.|.+|+|||||+.++... ...+-+.++++...+. ..++...+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~ 310 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA 310 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH
Confidence 3445555554334579999999999999999988873 2233345777765553 55555543
No 458
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.87 E-value=0.051 Score=51.29 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.3
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3579999999999999999999873
No 459
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.86 E-value=0.031 Score=48.57 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHhcC
Q 038220 192 ISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~ 212 (866)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 460
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.85 E-value=0.037 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 461
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.85 E-value=0.28 Score=50.46 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=54.8
Q ss_pred eechhhHH-HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 038220 169 VGLGEDMM-ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL 247 (866)
Q Consensus 169 vGr~~~~~-~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 247 (866)
.|...+.. .+.+++... ..++.|.|..|+||||++..+... +...-..++.+.-..++.... + .++.
T Consensus 62 lg~~~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~----~-~q~~-- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG----I-NQVQ-- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC----c-eEEE--
Confidence 35444433 343444333 248999999999999999988763 221111222221111111100 0 0000
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHH
Q 038220 248 GKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDD 288 (866)
Q Consensus 248 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~ 288 (866)
..........+.++..|+..+=.|+++++.+.+....
T Consensus 130 ----v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 130 ----VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred ----eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 0000112345567777777888999999988875443
No 462
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.84 E-value=0.32 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
-+|.++.|++|.||||+.+.+-+
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHh
Confidence 47999999999999999988754
No 463
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.83 E-value=0.28 Score=53.52 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|.++|..|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999888765
No 464
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.83 E-value=0.16 Score=54.00 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 038220 180 NRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 180 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~ 238 (866)
+.|..+=..-.++-|+|.+|+||||++.+++....... .=..++||+....|+.+.+.+
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 33444423457999999999999999998876422211 112699999988888776543
No 465
>PRK05439 pantothenate kinase; Provisional
Probab=93.82 E-value=0.29 Score=51.08 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred CceEEEEEEccCCChHHHHHHHHhcCccccCC--CCceEEEEeCCCCCHHHHHHHHHHHHhc-CCCCccccCCHHHHHHH
Q 038220 187 LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH--FDCCAWAYVSQEYRKWEILQDLCKKVLG-LGKADLDKMHMEDMKEE 263 (866)
Q Consensus 187 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 263 (866)
...-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+.....+.. ..+.. .+.+ ...+.+.+.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~P--es~D~~~l~~~ 157 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFP--ESYDMRALLRF 157 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCc--ccccHHHHHHH
Confidence 4578999999999999999998876 22221 123444544443333222221 01111 1111 23456666666
Q ss_pred HHHHhccCc
Q 038220 264 LSNFLQERR 272 (866)
Q Consensus 264 l~~~L~~k~ 272 (866)
|.....++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 666655554
No 466
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.37 Score=56.94 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCeeechhhHHHHHHHHhcCC------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGG------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
..++|.++.+..|.+.+.... .......+.|+.|+|||-||+.+.. -+.+..+..+-+++++-- +
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~-------e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQ-------E 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhh-------h
Confidence 357888888888888886531 1467888999999999999999887 233333444444444421 1
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhccCcE-EEEEecCCCh--hhHHHHHhhCC
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQERRF-IIVLDDIWEK--EAWDDLKAVFP 294 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~l~~~l~ 294 (866)
+.+-++.. +.. ...+...+|.+.++.++| +|+||||+.. +....+...+.
T Consensus 633 vskligsp--~gy---vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSP--PGY---VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCC--ccc---ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 22222221 111 112223356666666765 6669999754 34444444443
No 467
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.82 E-value=0.17 Score=55.43 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=47.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhcC------CCCc---cccCCHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKKVLGL------GKAD---LDKMHME 258 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~------~~~~---~~~~~~~ 258 (866)
-..++|.|..|+|||||++.+..... .+..+.+.+.+.. ...+..+.+...-... ...+ .......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35899999999999999999987422 1233333444432 3333333333221110 0000 0000011
Q ss_pred HHHHHHHHHh--ccCcEEEEEecCCC
Q 038220 259 DMKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 259 ~~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
...-.+.+++ +++++|+++||+..
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122344454 47899999999854
No 468
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.81 E-value=0.23 Score=54.40 Aligned_cols=89 Identities=11% Similarity=0.200 Sum_probs=47.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC-CHHHHHHHHHHHHhcC------C---CCccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY-RKWEILQDLCKKVLGL------G---KADLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~------~---~~~~~~~~~~~ 259 (866)
..++|+|..|+|||||++.+.+.. ..+.++...+.... ...++...+...-... . .+.........
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 479999999999999999998731 12333344444433 2333333332221111 0 00000011111
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCC
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWE 282 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~ 282 (866)
....+.+|+ +++++|+++||+..
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecchhH
Confidence 122344444 57899999999854
No 469
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.80 E-value=0.3 Score=54.44 Aligned_cols=52 Identities=23% Similarity=0.150 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
..+-+.|..+=..-.++.|.|.+|+|||||+.++... ....-..++|++..+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 3444444444233579999999999999999998764 222223577886554
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.79 E-value=0.072 Score=59.56 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 179 GNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 179 ~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++.+.....+..+|+|.|.+|+||||||+.+...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3444444446789999999999999999999873
No 471
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.78 E-value=0.37 Score=56.28 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++.++|+.|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 369999999999999988888763
No 472
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.047 Score=50.35 Aligned_cols=20 Identities=45% Similarity=0.737 Sum_probs=18.6
Q ss_pred EEEEEccCCChHHHHHHHHh
Q 038220 191 VISIIGMAGLGKTTLAKKMY 210 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~ 210 (866)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 473
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.76 E-value=0.17 Score=55.18 Aligned_cols=93 Identities=14% Similarity=0.283 Sum_probs=54.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccC--CCC---------ceEEEEeCCCCCHHHHHHHHHHHHhcC----------C
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKK--HFD---------CCAWAYVSQEYRKWEILQDLCKKVLGL----------G 248 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~v~~~~~~~~~~~~i~~~~~~~----------~ 248 (866)
+-++|.|-+|+|||||+.++.++..... -.| .++++.+.+.....+.+.+.+...... .
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 5789999999999999999987533100 012 567777777755555555555443311 0
Q ss_pred CCccccCCHHHHHHHHHHHhc---cCcEEEEEecCCC
Q 038220 249 KADLDKMHMEDMKEELSNFLQ---ERRFIIVLDDIWE 282 (866)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~ 282 (866)
.+...........-.+.+++. ++++|+++||+..
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 001111111112223556655 5899999999853
No 474
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.76 E-value=0.22 Score=49.02 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHh
Q 038220 190 SVISIIGMAGLGKTTLAKKMY 210 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~ 210 (866)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 475
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.41 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 476
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.75 E-value=0.92 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++++.|+.|+|||||.+.+..-
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999973
No 477
>PRK06217 hypothetical protein; Validated
Probab=93.75 E-value=0.043 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999974
No 478
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.043 Score=52.42 Aligned_cols=22 Identities=50% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.74 E-value=0.047 Score=52.75 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++++|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 480
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.74 E-value=0.41 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999864
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.28 Score=48.17 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCC
Q 038220 166 EDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF 219 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 219 (866)
+++-|-.+.++++-+...-. -..++-|.++|++|.|||-+|+.|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45667777777776654321 12356788999999999999999999 455544
No 482
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.034 Score=32.33 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=13.0
Q ss_pred CccEEecCCCccccccccccc
Q 038220 613 NLQSLDLSSTLVDPIPLVIWK 633 (866)
Q Consensus 613 ~L~~L~l~~~~~~~lp~~i~~ 633 (866)
+|++||+++|.+..+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466677777766666665443
No 483
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.69 E-value=0.11 Score=57.77 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCce-EEEEeCCCCCHHHHHHHHHHHHhcC------CC
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCC-AWAYVSQEYRKWEILQDLCKKVLGL------GK 249 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~v~~~~~~~~~~~~i~~~~~~~------~~ 249 (866)
++++.+..-. .-....|+|.+|+|||||++.+.+.. ...+-++. +.+-|.+.... + .+|.+.+... ..
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeE--V-tdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEE--V-TDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhh--H-HHHHHhccceEEEECCCC
Confidence 4455555422 12467899999999999999999841 12233443 35555554322 2 2333333111 01
Q ss_pred CccccCCHHHHHHHHHHHh--ccCcEEEEEecCC
Q 038220 250 ADLDKMHMEDMKEELSNFL--QERRFIIVLDDIW 281 (866)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~ 281 (866)
+.........+.-.+.+++ +++.+||++|++.
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1111111122222344455 5789999999994
No 484
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.68 E-value=0.046 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999883
No 485
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.65 E-value=0.053 Score=54.66 Aligned_cols=64 Identities=23% Similarity=0.175 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHH
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 239 (866)
.+++..+....++..+|+|.|.+|+|||||...+......+.|==.++-|+-|..++.-.++-+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4566666665556789999999999999999888774333333233556666777776555544
No 486
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.65 E-value=0.58 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|+|+.|.|||||++.+..-
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999863
No 487
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.65 E-value=0.13 Score=55.07 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=49.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
..++|+++....+...+..+. -+.+.|.+|+|||+||+.+... ... ..+++.+.......+++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCch
Confidence 348898888888877777765 7889999999999999999983 332 34666677666666655443
No 488
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.62 E-value=0.47 Score=51.89 Aligned_cols=119 Identities=12% Similarity=0.194 Sum_probs=60.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHhcC------CCCcc---ccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ-EYRKWEILQDLCKKVLGL------GKADL---DKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~------~~~~~---~~~~~~~ 259 (866)
..++|+|..|+|||||++.++..... ...++. .+.+ .....+.+...+..-... ...+. .......
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999999985221 122332 2333 345555555444432211 00000 0011112
Q ss_pred HHHHHHHHh--ccCcEEEEEecCCCh-hhHHHHHhhCCCCC-CCcEEEEEecchhhh
Q 038220 260 MKEELSNFL--QERRFIIVLDDIWEK-EAWDDLKAVFPDAK-NGSRIIFTTRFKDVA 312 (866)
Q Consensus 260 ~~~~l~~~L--~~k~~LlVlDdv~~~-~~~~~l~~~l~~~~-~gs~iivTtR~~~v~ 312 (866)
....+.+++ ++++.|+++||+... +....+...+.... .|--..+.|....+.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ 289 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLL 289 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHH
Confidence 222344444 478999999999654 33344433321111 244445544444333
No 489
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.62 E-value=0.43 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 490
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.62 E-value=0.097 Score=50.60 Aligned_cols=42 Identities=36% Similarity=0.467 Sum_probs=30.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|.+..+..+.-....+ .-+.++|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 46788887777666555543 4789999999999999999974
No 491
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.61 E-value=0.11 Score=48.24 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 173 EDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 173 ~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+.++++.+.+.. ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 356666776655 38999999999999999999985
No 492
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.39 Score=48.17 Aligned_cols=93 Identities=28% Similarity=0.340 Sum_probs=61.1
Q ss_pred CCeeechhhHHHHHHHHhc----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHH
Q 038220 166 EDIVGLGEDMMILGNRVIH----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWE 235 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~ 235 (866)
.++-|.+..++.|.+...= .....+-|.++|++|.||+-||+.|+... .. -|.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NS-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CC-----ceEEeehH-----
Confidence 4577888888887776532 12247889999999999999999999842 12 23345543
Q ss_pred HHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCC
Q 038220 236 ILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWE 282 (866)
Q Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~ 282 (866)
+++..+.+. .+.++..|.+.. ++++-+|.+|.++.
T Consensus 201 ---DLvSKWmGE---------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMGE---------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhcc---------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 344444442 134445554444 36889999999863
No 493
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.58 E-value=0.72 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|..|+|||||++.+...
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 494
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.58 E-value=0.046 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999873
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.57 E-value=0.4 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.2
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...++.++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999988873
No 496
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.57 E-value=0.23 Score=53.42 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=59.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
..+.|.|+.|+||||+.+.+.+. +..+....++. +.... +-..... ...... . +. ..+.....+.++..|.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~--E~~~~~~-~~~i~q-~-ev-g~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPI--EYVHRNK-RSLINQ-R-EV-GLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCCh--hhhccCc-cceEEc-c-cc-CCCCcCHHHHHHHhhc
Confidence 58999999999999999988873 33344444443 22221 1110000 000000 0 00 1111234556777788
Q ss_pred cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecc
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
..+=.|++|.+.+.+.+...... ...|-.++.|.-.
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha 229 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHT 229 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcC
Confidence 89999999999888766653333 2334445555543
No 497
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.54 E-value=0.28 Score=53.49 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=26.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE 230 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 230 (866)
..++|+|..|+|||||++.+.+... .+..+...+...
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer 174 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGER 174 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecC
Confidence 4789999999999999999987421 233444555554
No 498
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.54 E-value=0.046 Score=52.60 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 499
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.062 Score=49.09 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988876
No 500
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.59 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999864
Done!