Query 038220
Match_columns 866
No_of_seqs 438 out of 4530
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.7E-47 2.3E-51 433.4 24.5 319 169-511 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.5E-38 8.6E-43 363.4 22.5 290 166-502 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-37 7.5E-42 394.6 30.8 318 161-509 119-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.3E-34 2.5E-38 331.1 29.0 310 163-506 121-449 (591)
5 3rgz_A Protein brassinosteroid 99.9 6.8E-27 2.3E-31 280.1 8.3 298 565-866 393-765 (768)
6 2id5_A Lingo-1, leucine rich r 99.9 1.5E-25 5.1E-30 254.2 15.6 304 543-851 31-340 (477)
7 3v47_A TOLL-like receptor 5B a 99.9 6.6E-25 2.3E-29 247.5 15.2 318 523-843 28-407 (455)
8 4fmz_A Internalin; leucine ric 99.9 1.7E-24 5.7E-29 234.7 17.7 299 524-843 43-345 (347)
9 3rgz_A Protein brassinosteroid 99.9 2E-25 6.9E-30 267.4 11.2 276 564-843 267-550 (768)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-24 6.5E-29 253.1 17.8 123 524-646 31-164 (606)
11 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.8E-29 258.6 14.4 306 525-843 491-839 (876)
12 3o6n_A APL1; leucine-rich repe 99.9 5.3E-24 1.8E-28 234.6 17.6 291 543-850 44-358 (390)
13 4eco_A Uncharacterized protein 99.9 1E-24 3.5E-29 255.1 12.3 265 566-843 305-599 (636)
14 4ecn_A Leucine-rich repeat pro 99.9 1.4E-24 5E-29 257.6 13.4 294 542-843 489-818 (876)
15 4eco_A Uncharacterized protein 99.9 1.2E-24 4E-29 254.6 12.3 297 537-843 240-578 (636)
16 4fmz_A Internalin; leucine ric 99.9 8.3E-24 2.8E-28 229.2 18.1 283 540-843 40-323 (347)
17 2z63_A TOLL-like receptor 4, v 99.9 4.5E-24 1.5E-28 248.2 15.6 116 728-843 415-530 (570)
18 4fcg_A Uncharacterized protein 99.9 8.9E-24 3.1E-28 225.9 15.8 233 565-842 80-312 (328)
19 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.7E-28 245.0 17.4 293 542-848 49-362 (597)
20 3t6q_A CD180 antigen; protein- 99.9 9.4E-24 3.2E-28 247.2 16.3 275 567-843 255-559 (606)
21 2z7x_B TOLL-like receptor 1, v 99.9 4.1E-24 1.4E-28 245.3 11.4 313 525-845 21-482 (520)
22 3t6q_A CD180 antigen; protein- 99.9 3E-24 1E-28 251.5 10.4 291 526-820 255-560 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 7.7E-24 2.6E-28 247.9 11.2 128 543-670 31-164 (606)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-23 5.1E-28 242.6 12.3 136 706-845 350-511 (562)
25 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4.2E-27 230.2 19.0 274 566-843 32-308 (477)
26 3v47_A TOLL-like receptor 5B a 99.9 2.6E-23 8.8E-28 234.4 13.3 296 524-824 53-412 (455)
27 2z81_A CD282 antigen, TOLL-lik 99.9 7.4E-23 2.5E-27 236.6 16.8 318 524-843 25-422 (549)
28 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-23 4.1E-28 223.5 8.7 247 566-819 50-303 (313)
29 3bz5_A Internalin-J, INLJ; leu 99.9 4E-22 1.4E-26 222.8 21.3 293 524-844 41-352 (457)
30 1o6v_A Internalin A; bacterial 99.9 2.8E-22 9.4E-27 226.1 19.7 295 525-842 68-386 (466)
31 3j0a_A TOLL-like receptor 5; m 99.9 8.2E-23 2.8E-27 247.4 16.1 312 524-842 23-392 (844)
32 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-23 2E-27 235.6 13.9 291 544-842 21-455 (520)
33 1o6v_A Internalin A; bacterial 99.9 2.6E-22 8.8E-27 226.4 18.5 298 525-843 46-365 (466)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-22 8E-27 243.4 19.1 299 542-843 22-374 (844)
35 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.6E-27 224.1 14.5 267 564-843 43-330 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.2E-27 234.9 15.5 292 544-843 52-485 (562)
37 1xku_A Decorin; proteoglycan, 99.9 3.4E-22 1.1E-26 214.7 16.1 265 566-841 52-329 (330)
38 1ogq_A PGIP-2, polygalacturona 99.9 4.5E-23 1.5E-27 219.2 8.8 247 544-797 50-305 (313)
39 1xku_A Decorin; proteoglycan, 99.9 1.4E-22 4.7E-27 217.7 12.5 267 566-844 31-306 (330)
40 2z63_A TOLL-like receptor 4, v 99.9 7.9E-23 2.7E-27 237.7 10.8 320 523-843 26-506 (570)
41 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-22 2.8E-26 220.2 17.5 274 540-843 38-330 (457)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-22 7.9E-27 216.1 11.4 283 545-842 34-331 (332)
43 1ziw_A TOLL-like receptor 3; i 99.9 5.7E-22 1.9E-26 235.3 15.0 315 525-842 25-364 (680)
44 3oja_B Anopheles plasmodium-re 99.9 5.9E-22 2E-26 230.4 14.1 266 565-843 50-336 (597)
45 2z81_A CD282 antigen, TOLL-lik 99.9 3E-21 1E-25 223.1 18.6 155 681-843 332-509 (549)
46 2ft3_A Biglycan; proteoglycan, 99.9 6.8E-22 2.3E-26 212.4 12.2 266 566-844 33-307 (332)
47 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-21 1.5E-25 227.7 13.6 301 540-845 268-623 (680)
48 4fcg_A Uncharacterized protein 99.8 5.4E-21 1.8E-25 204.3 12.9 229 543-816 80-310 (328)
49 4g8a_A TOLL-like receptor 4; l 99.8 3.6E-21 1.2E-25 226.8 12.5 126 523-648 50-186 (635)
50 2z66_A Variable lymphocyte rec 99.8 3.6E-21 1.2E-25 204.4 7.9 225 566-843 28-260 (306)
51 2z80_A TOLL-like receptor 2, v 99.8 8E-20 2.7E-24 198.1 15.2 249 566-843 52-313 (353)
52 3zyi_A Leucine-rich repeat-con 99.8 4.6E-20 1.6E-24 207.0 13.0 244 569-844 57-303 (452)
53 2z66_A Variable lymphocyte rec 99.8 4.5E-20 1.5E-24 195.8 12.1 225 543-795 27-260 (306)
54 3zyj_A Leucine-rich repeat-con 99.8 5.8E-20 2E-24 205.5 13.0 244 569-844 46-292 (440)
55 1jl5_A Outer protein YOPM; leu 99.8 3E-19 1E-23 199.3 18.5 284 525-844 91-409 (454)
56 3g06_A SSPH2 (leucine-rich rep 99.8 7E-19 2.4E-23 202.2 20.3 236 566-843 61-296 (622)
57 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 192.3 14.0 249 544-796 52-314 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-20 1.1E-24 197.8 3.1 248 560-823 28-278 (317)
59 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5E-23 194.1 15.3 224 566-795 64-291 (440)
60 3zyi_A Leucine-rich repeat-con 99.8 1.3E-18 4.3E-23 195.3 14.7 222 567-794 76-301 (452)
61 3qfl_A MLA10; coiled-coil, (CC 99.8 2E-19 7E-24 156.3 5.9 83 4-86 1-85 (115)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.2E-23 180.8 13.4 246 567-841 33-284 (285)
63 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.5E-23 204.2 13.7 322 524-848 75-584 (635)
64 1z7x_W Ribonuclease inhibitor; 99.8 3E-21 1E-25 218.0 -9.3 319 525-843 28-410 (461)
65 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-18 1.1E-22 179.3 13.3 220 569-843 14-237 (285)
66 1wwl_A Monocyte differentiatio 99.8 4E-20 1.4E-24 196.4 -1.7 83 587-669 93-183 (312)
67 3oja_A Leucine-rich immune mol 99.7 2.4E-19 8.3E-24 202.2 3.9 240 563-818 31-273 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.7 4.4E-18 1.5E-22 195.6 14.4 241 544-825 61-302 (622)
69 1jl5_A Outer protein YOPM; leu 99.7 1.3E-17 4.4E-22 186.1 16.4 284 525-842 111-427 (454)
70 3o53_A Protein LRIM1, AGAP0063 99.7 6.1E-20 2.1E-24 195.5 -2.4 243 541-797 31-276 (317)
71 1z7x_W Ribonuclease inhibitor; 99.7 5.9E-21 2E-25 215.5 -11.2 319 526-844 4-383 (461)
72 1wwl_A Monocyte differentiatio 99.7 2.4E-18 8.3E-23 182.7 9.4 250 561-820 38-309 (312)
73 2ast_B S-phase kinase-associat 99.7 2E-19 6.9E-24 193.7 0.6 254 568-828 49-314 (336)
74 3ogk_B Coronatine-insensitive 99.7 3.7E-19 1.3E-23 207.6 2.3 301 542-842 190-524 (592)
75 3oja_A Leucine-rich immune mol 99.7 5.4E-18 1.8E-22 191.2 10.7 217 587-844 32-250 (487)
76 3ogk_B Coronatine-insensitive 99.7 6E-19 2.1E-23 205.8 2.2 299 542-843 162-500 (592)
77 2ast_B S-phase kinase-associat 99.7 6.6E-19 2.2E-23 189.7 -2.5 247 590-843 48-305 (336)
78 3rfs_A Internalin B, repeat mo 99.7 4.8E-17 1.6E-21 168.9 11.4 209 563-832 38-247 (272)
79 2z62_A TOLL-like receptor 4, v 99.7 7.5E-17 2.6E-21 168.1 12.6 79 590-668 29-109 (276)
80 2o6q_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 163.8 14.8 198 568-795 18-217 (270)
81 2ca6_A RAN GTPase-activating p 99.7 8E-19 2.7E-23 192.7 -4.2 89 559-647 25-134 (386)
82 3rfs_A Internalin B, repeat mo 99.7 7.7E-17 2.6E-21 167.4 10.8 127 541-669 38-167 (272)
83 2ca6_A RAN GTPase-activating p 99.7 1E-18 3.4E-23 191.9 -4.0 254 567-820 10-316 (386)
84 1h6u_A Internalin H; cell adhe 99.7 9.9E-17 3.4E-21 169.6 11.3 193 564-772 39-231 (308)
85 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.1E-21 164.9 13.9 201 562-795 6-207 (290)
86 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 6E-21 165.3 10.6 204 566-771 28-237 (276)
87 2p1m_B Transport inhibitor res 99.7 3.2E-18 1.1E-22 199.8 -3.2 88 754-843 428-518 (594)
88 2p1m_B Transport inhibitor res 99.7 2.4E-18 8.2E-23 200.9 -4.7 110 731-841 429-541 (594)
89 2o6q_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 160.7 13.6 173 590-793 17-191 (270)
90 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.4E-21 166.2 9.5 201 585-844 6-208 (290)
91 1h6u_A Internalin H; cell adhe 99.6 4.4E-16 1.5E-20 164.7 10.5 193 585-795 37-229 (308)
92 2qen_A Walker-type ATPase; unk 99.6 1.8E-14 6.1E-19 155.8 22.2 297 163-503 9-349 (350)
93 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.4E-20 153.2 12.6 204 577-842 22-237 (239)
94 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.9E-20 155.3 10.5 194 567-794 32-237 (239)
95 1w5s_A Origin recognition comp 99.6 2.9E-14 1E-18 157.9 19.4 301 164-482 20-372 (412)
96 4glp_A Monocyte differentiatio 99.6 4.5E-15 1.5E-19 157.3 11.5 220 568-795 66-306 (310)
97 3goz_A Leucine-rich repeat-con 99.6 1E-16 3.5E-21 174.0 -3.0 250 571-820 3-297 (362)
98 2fna_A Conserved hypothetical 99.5 2.5E-13 8.6E-18 147.2 22.5 293 163-502 10-356 (357)
99 3goz_A Leucine-rich repeat-con 99.5 3.3E-16 1.1E-20 170.0 -1.3 243 556-798 12-299 (362)
100 3m19_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 144.8 13.7 101 567-669 15-117 (251)
101 1h6t_A Internalin B; cell adhe 99.5 1.3E-14 4.5E-19 151.8 9.6 125 563-694 43-167 (291)
102 4ay9_X Follicle-stimulating ho 99.5 2.8E-14 9.5E-19 153.9 11.9 237 569-816 12-255 (350)
103 4ay9_X Follicle-stimulating ho 99.5 2.3E-14 7.9E-19 154.6 11.1 255 585-851 6-265 (350)
104 4glp_A Monocyte differentiatio 99.5 5.6E-15 1.9E-19 156.6 5.7 225 590-843 65-306 (310)
105 3m19_A Variable lymphocyte rec 99.5 6.8E-14 2.3E-18 143.2 12.8 177 589-795 14-191 (251)
106 1m9s_A Internalin B; cell inva 99.5 1.7E-14 6E-19 165.6 7.8 82 562-646 61-142 (605)
107 1h6t_A Internalin B; cell adhe 99.5 6.9E-14 2.3E-18 146.3 11.5 173 585-772 42-214 (291)
108 1m9s_A Internalin B; cell inva 99.5 4.9E-14 1.7E-18 161.9 10.4 175 562-750 39-213 (605)
109 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.6E-18 135.9 10.8 153 586-770 41-193 (197)
110 4ezg_A Putative uncharacterize 99.5 8.6E-14 2.9E-18 136.6 8.3 128 564-694 42-170 (197)
111 3cvr_A Invasion plasmid antige 99.5 1.3E-13 4.6E-18 156.3 10.8 112 567-694 60-171 (571)
112 1xeu_A Internalin C; cellular 99.4 8.7E-14 3E-18 143.1 6.1 120 568-695 21-140 (263)
113 2o6s_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 132.4 10.2 78 569-648 10-89 (208)
114 3cvr_A Invasion plasmid antige 99.4 3.5E-13 1.2E-17 152.9 9.2 93 590-695 60-152 (571)
115 2qby_B CDC6 homolog 3, cell di 99.4 3.9E-11 1.3E-15 131.3 24.9 296 166-483 20-341 (384)
116 2o6s_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 132.2 8.2 104 565-669 27-134 (208)
117 1fnn_A CDC6P, cell division co 99.4 9.3E-11 3.2E-15 128.5 26.3 320 165-507 16-385 (389)
118 1xeu_A Internalin C; cellular 99.3 1.5E-12 5.3E-17 133.7 9.0 147 561-719 36-182 (263)
119 2v1u_A Cell division control p 99.3 1.7E-10 5.7E-15 126.4 25.5 295 165-482 18-352 (387)
120 1dce_A Protein (RAB geranylger 99.3 2.6E-14 8.9E-19 163.2 -6.2 121 710-838 442-567 (567)
121 2v9t_B SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 124.8 11.8 130 566-695 32-164 (220)
122 2xot_A Amphoterin-induced prot 99.3 2.9E-12 9.9E-17 138.6 9.2 124 569-694 21-147 (361)
123 2v9t_B SLIT homolog 2 protein 99.3 9.2E-12 3.2E-16 124.2 11.4 96 569-667 14-112 (220)
124 2qby_A CDC6 homolog 1, cell di 99.3 8.4E-11 2.9E-15 128.7 19.2 296 164-482 18-349 (386)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 1.3E-11 4.4E-16 123.1 11.5 78 569-648 14-94 (220)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-11 4.7E-16 122.9 11.7 129 567-695 33-165 (220)
127 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.8E-17 153.8 4.5 124 557-681 215-338 (727)
128 3e6j_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 123.8 11.1 128 566-694 40-170 (229)
129 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 120.1 7.5 104 544-648 24-133 (168)
130 2ell_A Acidic leucine-rich nuc 99.3 1.6E-11 5.5E-16 116.8 10.4 130 564-695 22-159 (168)
131 2xot_A Amphoterin-induced prot 99.2 7.9E-12 2.7E-16 135.2 8.4 174 591-770 20-201 (361)
132 3e6j_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 120.6 11.6 129 543-672 39-172 (229)
133 2je0_A Acidic leucine-rich nuc 99.2 4.6E-12 1.6E-16 118.0 4.3 81 566-647 17-100 (149)
134 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.2E-16 115.0 6.7 123 543-667 16-148 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.2 2.3E-11 7.8E-16 116.7 7.9 130 562-695 15-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.2 2.7E-11 9.2E-16 116.2 8.0 129 540-670 15-151 (176)
137 1w8a_A SLIT protein; signaling 99.2 4.2E-11 1.4E-15 116.6 9.2 125 569-695 11-138 (192)
138 2wfh_A SLIT homolog 2 protein 99.2 9E-11 3.1E-15 114.2 10.4 125 569-695 13-138 (193)
139 4b8c_D Glucose-repressible alc 99.1 4.7E-12 1.6E-16 149.3 -0.6 150 544-695 173-328 (727)
140 1njg_A DNA polymerase III subu 99.1 4.2E-10 1.4E-14 114.5 14.0 200 165-379 22-231 (250)
141 1dce_A Protein (RAB geranylger 99.1 1.4E-10 4.8E-15 132.3 8.5 100 568-669 443-543 (567)
142 3sb4_A Hypothetical leucine ri 99.1 1.4E-10 4.8E-15 123.7 7.8 283 544-838 25-328 (329)
143 1w8a_A SLIT protein; signaling 99.0 5.8E-10 2E-14 108.4 10.7 106 567-672 30-139 (192)
144 2chg_A Replication factor C sm 99.0 3.7E-09 1.3E-13 105.7 15.9 184 165-375 16-203 (226)
145 1ds9_A Outer arm dynein; leuci 99.0 1.3E-11 4.4E-16 121.0 -2.3 114 579-695 38-152 (198)
146 1ds9_A Outer arm dynein; leuci 99.0 7.4E-12 2.5E-16 122.8 -5.9 128 559-689 41-180 (198)
147 2wfh_A SLIT homolog 2 protein 99.0 1.9E-09 6.4E-14 104.8 11.3 104 566-670 31-137 (193)
148 2o6r_A Variable lymphocyte rec 99.0 2E-09 7E-14 103.1 10.4 124 569-694 10-135 (177)
149 4fdw_A Leucine rich hypothetic 98.9 5.3E-08 1.8E-12 105.9 19.5 258 544-842 113-381 (401)
150 2o6r_A Variable lymphocyte rec 98.9 9.6E-09 3.3E-13 98.4 11.3 109 566-675 28-140 (177)
151 1sxj_B Activator 1 37 kDa subu 98.8 1.2E-08 4.3E-13 108.3 12.7 185 165-376 20-210 (323)
152 3g39_A Variable lymphocyte rec 98.8 8E-09 2.7E-13 98.0 9.0 101 568-671 11-114 (170)
153 2r9u_A Variable lymphocyte rec 98.8 9.9E-09 3.4E-13 97.7 9.2 99 569-670 15-116 (174)
154 1hqc_A RUVB; extended AAA-ATPa 98.7 7.1E-08 2.4E-12 102.4 14.6 277 165-480 11-324 (324)
155 2r9u_A Variable lymphocyte rec 98.7 2.6E-08 8.8E-13 94.8 9.3 100 547-648 15-118 (174)
156 3sb4_A Hypothetical leucine ri 98.7 5.1E-08 1.7E-12 103.7 11.6 257 543-813 48-327 (329)
157 2ra8_A Uncharacterized protein 98.6 6.6E-09 2.3E-13 110.9 2.5 161 679-843 135-319 (362)
158 3g39_A Variable lymphocyte rec 98.6 5.7E-08 2E-12 92.1 8.4 103 590-695 10-114 (170)
159 4fdw_A Leucine rich hypothetic 98.6 8E-07 2.7E-11 96.6 18.0 243 540-817 132-380 (401)
160 1iqp_A RFCS; clamp loader, ext 98.6 9.2E-08 3.1E-12 101.7 10.2 185 165-377 24-213 (327)
161 3te6_A Regulatory protein SIR3 98.5 9E-07 3.1E-11 91.5 13.9 172 167-342 21-213 (318)
162 3un9_A NLR family member X1; l 98.5 8.1E-09 2.8E-13 111.3 -1.8 41 679-719 179-221 (372)
163 3un9_A NLR family member X1; l 98.4 2.9E-08 1E-12 106.9 -0.3 136 566-721 101-251 (372)
164 1jr3_A DNA polymerase III subu 98.4 1.8E-06 6.3E-11 93.5 14.0 197 166-376 16-221 (373)
165 2ifg_A High affinity nerve gro 98.4 6.3E-07 2.2E-11 96.0 9.5 97 571-669 13-113 (347)
166 2chq_A Replication factor C sm 98.4 2.1E-06 7.1E-11 90.7 13.3 181 165-375 16-203 (319)
167 1jbk_A CLPB protein; beta barr 98.4 2.4E-07 8.1E-12 89.9 5.0 46 165-212 21-66 (195)
168 2ra8_A Uncharacterized protein 98.3 1.8E-07 6.2E-12 99.7 3.2 64 732-795 250-319 (362)
169 2ifg_A High affinity nerve gro 98.3 1.1E-06 3.6E-11 94.3 8.0 90 558-648 24-116 (347)
170 3pfi_A Holliday junction ATP-d 98.3 2.3E-05 7.9E-10 83.4 18.0 174 164-374 27-225 (338)
171 4fs7_A Uncharacterized protein 98.2 1.1E-05 3.6E-10 88.0 15.4 284 538-841 65-376 (394)
172 3e4g_A ATP synthase subunit S, 98.2 4.4E-07 1.5E-11 84.6 3.2 88 734-822 61-154 (176)
173 1sxj_D Activator 1 41 kDa subu 98.2 9.1E-06 3.1E-10 87.2 12.6 194 165-374 36-233 (353)
174 4fs7_A Uncharacterized protein 98.2 8E-06 2.7E-10 89.0 11.8 291 526-836 72-393 (394)
175 3uk6_A RUVB-like 2; hexameric 98.1 2.8E-05 9.6E-10 83.8 15.9 195 165-373 43-300 (368)
176 1sxj_E Activator 1 40 kDa subu 98.1 7.2E-06 2.5E-10 88.0 10.8 195 165-375 13-236 (354)
177 3h4m_A Proteasome-activating n 98.1 2E-05 7E-10 81.5 12.9 181 163-373 14-228 (285)
178 3bos_A Putative DNA replicatio 98.1 4.3E-06 1.5E-10 84.2 7.5 171 166-375 28-216 (242)
179 1sxj_A Activator 1 95 kDa subu 98.1 1.1E-05 3.8E-10 90.8 11.1 191 164-376 37-253 (516)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.1 9.2E-05 3.2E-09 75.4 17.0 178 165-370 5-215 (262)
181 1d2n_A N-ethylmaleimide-sensit 98.0 4.6E-05 1.6E-09 78.1 14.5 169 166-367 33-228 (272)
182 3pvs_A Replication-associated 98.0 2.8E-05 9.6E-10 85.2 12.9 179 165-373 25-212 (447)
183 2z4s_A Chromosomal replication 98.0 2.3E-05 8E-10 86.0 12.1 203 166-396 105-332 (440)
184 3syl_A Protein CBBX; photosynt 98.0 1E-05 3.5E-10 84.9 8.8 157 167-342 32-219 (309)
185 3u61_B DNA polymerase accessor 98.0 3.5E-05 1.2E-09 81.3 11.9 177 165-372 25-212 (324)
186 3d8b_A Fidgetin-like protein 1 97.9 0.00021 7E-09 76.3 16.7 184 163-376 81-295 (357)
187 1a5t_A Delta prime, HOLB; zinc 97.9 0.00021 7.1E-09 75.5 15.7 170 172-376 8-205 (334)
188 4gt6_A Cell surface protein; l 97.9 7.2E-05 2.5E-09 81.4 12.4 289 540-843 59-369 (394)
189 1io0_A Tropomodulin; LRR prote 97.8 7.2E-06 2.4E-10 78.6 3.6 82 561-642 31-128 (185)
190 1l8q_A Chromosomal replication 97.8 0.00016 5.6E-09 76.2 14.4 166 176-371 24-203 (324)
191 3n70_A Transport activator; si 97.8 1.8E-05 6.1E-10 72.4 6.0 112 167-308 2-115 (145)
192 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0012 4.1E-08 69.1 20.8 185 164-376 10-223 (322)
193 3eie_A Vacuolar protein sortin 97.8 0.00031 1.1E-08 73.8 16.3 184 163-376 15-228 (322)
194 3vfd_A Spastin; ATPase, microt 97.8 0.00041 1.4E-08 75.0 17.4 184 163-375 112-325 (389)
195 1sxj_C Activator 1 40 kDa subu 97.8 0.00017 5.8E-09 76.6 13.5 176 165-373 24-209 (340)
196 2p65_A Hypothetical protein PF 97.7 2.9E-05 1E-09 74.4 6.1 46 165-212 21-66 (187)
197 3b9p_A CG5977-PA, isoform A; A 97.7 0.00097 3.3E-08 69.2 18.1 179 164-375 19-232 (297)
198 2qp9_X Vacuolar protein sortin 97.7 0.00067 2.3E-08 72.2 16.3 184 164-376 49-261 (355)
199 2zan_A Vacuolar protein sortin 97.7 0.00069 2.4E-08 74.4 16.6 185 163-375 131-344 (444)
200 3e4g_A ATP synthase subunit S, 97.7 9.9E-06 3.4E-10 75.4 1.3 87 710-798 62-154 (176)
201 3cf0_A Transitional endoplasmi 97.6 0.00063 2.2E-08 70.6 14.8 155 164-341 13-200 (301)
202 3ec2_A DNA replication protein 97.6 5E-05 1.7E-09 72.4 5.8 117 171-307 19-141 (180)
203 4gt6_A Cell surface protein; l 97.6 0.00085 2.9E-08 72.8 16.1 266 560-841 57-344 (394)
204 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.3E-10 75.2 2.7 107 541-647 33-163 (185)
205 3co5_A Putative two-component 97.5 4.9E-05 1.7E-09 69.2 4.1 46 167-212 5-50 (143)
206 1qvr_A CLPB protein; coiled co 97.5 0.00025 8.4E-09 85.1 11.2 154 165-339 169-344 (854)
207 2gno_A DNA polymerase III, gam 97.5 0.00054 1.9E-08 70.8 11.9 146 170-340 1-152 (305)
208 1lv7_A FTSH; alpha/beta domain 97.4 0.00096 3.3E-08 67.5 12.5 49 164-212 10-68 (257)
209 3pxg_A Negative regulator of g 97.4 0.00038 1.3E-08 77.1 9.5 146 166-340 180-338 (468)
210 4fcw_A Chaperone protein CLPB; 97.4 0.0006 2E-08 71.3 10.5 61 167-229 18-85 (311)
211 3hu3_A Transitional endoplasmi 97.4 0.00037 1.3E-08 77.1 8.9 153 166-341 204-386 (489)
212 4b4t_J 26S protease regulatory 97.3 0.0029 1E-07 67.0 14.9 175 164-368 146-353 (405)
213 1r6b_X CLPA protein; AAA+, N-t 97.3 0.002 6.7E-08 76.5 15.2 154 166-340 186-362 (758)
214 4b4t_L 26S protease subunit RP 97.3 0.0033 1.1E-07 67.7 15.4 154 165-342 180-367 (437)
215 1in4_A RUVB, holliday junction 97.3 0.02 6.9E-07 60.1 21.4 171 166-373 25-220 (334)
216 4h09_A Hypothetical leucine ri 97.3 0.0024 8.4E-08 68.8 14.6 78 732-814 261-340 (379)
217 3rw6_A Nuclear RNA export fact 97.3 0.00013 4.5E-09 73.4 4.1 61 587-648 168-233 (267)
218 2c9o_A RUVB-like 1; hexameric 97.3 0.0017 5.9E-08 71.7 13.2 92 273-375 297-409 (456)
219 2w58_A DNAI, primosome compone 97.2 0.00042 1.4E-08 67.3 6.4 52 174-227 37-90 (202)
220 3rw6_A Nuclear RNA export fact 97.2 0.00018 6E-09 72.5 3.8 79 563-642 167-258 (267)
221 2bjv_A PSP operon transcriptio 97.2 0.0014 4.7E-08 66.7 10.5 47 166-212 6-52 (265)
222 4b4t_H 26S protease regulatory 97.1 0.0026 8.8E-08 68.4 12.1 173 166-368 209-414 (467)
223 1ojl_A Transcriptional regulat 97.1 0.00084 2.9E-08 69.6 8.3 47 166-212 2-48 (304)
224 4b4t_M 26S protease regulatory 97.1 0.0044 1.5E-07 66.7 13.4 154 164-341 179-366 (434)
225 2kjq_A DNAA-related protein; s 97.0 0.00052 1.8E-08 62.7 4.8 23 190-212 37-59 (149)
226 2ce7_A Cell division protein F 97.0 0.0041 1.4E-07 68.1 12.6 175 165-369 15-221 (476)
227 4b4t_I 26S protease regulatory 97.0 0.0098 3.4E-07 63.2 14.5 152 166-341 182-367 (437)
228 3pxi_A Negative regulator of g 97.0 0.0016 5.5E-08 77.1 9.6 151 165-340 179-338 (758)
229 2r62_A Cell division protease 96.8 0.0006 2.1E-08 69.5 3.3 48 165-212 10-67 (268)
230 4h09_A Hypothetical leucine ri 96.7 0.024 8.2E-07 60.8 16.1 106 679-792 236-342 (379)
231 3pxi_A Negative regulator of g 96.7 0.0045 1.5E-07 73.2 10.2 150 166-339 491-674 (758)
232 3cf2_A TER ATPase, transitiona 96.6 0.0053 1.8E-07 71.4 9.6 175 165-369 203-407 (806)
233 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0015 5.1E-08 66.7 4.4 69 189-282 123-193 (331)
234 2cvh_A DNA repair and recombin 96.5 0.0075 2.6E-07 59.1 9.3 87 190-282 21-116 (220)
235 2x8a_A Nuclear valosin-contain 96.3 0.05 1.7E-06 55.1 14.2 48 165-212 9-67 (274)
236 2dhr_A FTSH; AAA+ protein, hex 96.3 0.019 6.4E-07 63.3 11.7 50 163-212 28-87 (499)
237 4b4t_K 26S protease regulatory 96.3 0.0081 2.8E-07 64.6 8.6 50 163-212 169-229 (428)
238 3t15_A Ribulose bisphosphate c 96.1 0.0084 2.9E-07 61.7 7.2 25 188-212 35-59 (293)
239 3hr8_A Protein RECA; alpha and 96.1 0.016 5.5E-07 60.8 9.2 87 189-282 61-150 (356)
240 1ypw_A Transitional endoplasmi 96.0 0.018 6.3E-07 68.0 10.7 48 165-212 203-261 (806)
241 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.016 5.4E-07 57.3 8.5 115 190-309 24-168 (235)
242 1r6b_X CLPA protein; AAA+, N-t 95.9 0.027 9.1E-07 66.7 11.3 46 166-211 458-510 (758)
243 2cbz_A Multidrug resistance-as 95.8 0.063 2.2E-06 53.0 11.8 23 190-212 32-54 (237)
244 3m6a_A ATP-dependent protease 95.8 0.008 2.7E-07 67.7 5.8 46 166-211 81-130 (543)
245 1n0w_A DNA repair protein RAD5 95.7 0.019 6.5E-07 57.2 7.9 91 190-281 25-129 (243)
246 1qvr_A CLPB protein; coiled co 95.7 0.019 6.4E-07 68.8 9.0 46 166-211 558-610 (854)
247 1v5w_A DMC1, meiotic recombina 95.7 0.041 1.4E-06 57.9 10.6 50 189-238 122-175 (343)
248 1vpl_A ABC transporter, ATP-bi 95.6 0.087 3E-06 52.6 11.9 22 190-211 42-63 (256)
249 3c8u_A Fructokinase; YP_612366 95.5 0.0097 3.3E-07 57.8 4.3 37 175-211 8-44 (208)
250 3bh0_A DNAB-like replicative h 95.5 0.047 1.6E-06 56.7 9.8 53 190-246 69-121 (315)
251 2z43_A DNA repair and recombin 95.4 0.028 9.6E-07 58.7 8.1 54 190-244 108-165 (324)
252 1jr3_D DNA polymerase III, del 95.4 0.15 5.1E-06 53.7 13.6 155 189-374 18-183 (343)
253 2pze_A Cystic fibrosis transme 95.4 0.25 8.5E-06 48.4 14.2 23 190-212 35-57 (229)
254 1rz3_A Hypothetical protein rb 95.3 0.016 5.3E-07 55.9 5.1 41 171-211 3-44 (201)
255 1g5t_A COB(I)alamin adenosyltr 95.3 0.017 5.8E-07 54.4 5.1 114 190-309 29-163 (196)
256 2i1q_A DNA repair and recombin 95.3 0.036 1.2E-06 57.9 8.2 92 189-281 98-214 (322)
257 2b8t_A Thymidine kinase; deoxy 95.2 0.0058 2E-07 59.5 1.8 113 189-310 12-127 (223)
258 1ofh_A ATP-dependent HSL prote 95.2 0.0073 2.5E-07 62.8 2.7 47 166-212 15-73 (310)
259 1u94_A RECA protein, recombina 95.2 0.036 1.2E-06 58.3 7.9 84 190-281 64-151 (356)
260 1xp8_A RECA protein, recombina 95.2 0.046 1.6E-06 57.7 8.8 85 190-281 75-162 (366)
261 2zr9_A Protein RECA, recombina 95.1 0.047 1.6E-06 57.4 8.3 85 190-281 62-149 (349)
262 3io5_A Recombination and repai 95.0 0.072 2.5E-06 54.1 9.1 85 191-282 30-122 (333)
263 1j8m_F SRP54, signal recogniti 95.0 0.078 2.7E-06 54.3 9.6 90 189-280 98-189 (297)
264 2r44_A Uncharacterized protein 94.9 0.014 4.8E-07 61.4 3.9 42 166-211 27-68 (331)
265 1pgv_A TMD-1, tropomodulin TMD 94.9 0.015 5.1E-07 55.1 3.6 64 561-624 36-110 (197)
266 3tui_C Methionine import ATP-b 94.9 0.14 4.9E-06 53.5 11.4 22 190-211 55-76 (366)
267 2pjz_A Hypothetical protein ST 94.9 0.18 6.2E-06 50.4 11.7 21 191-211 32-52 (263)
268 1vma_A Cell division protein F 94.9 0.094 3.2E-06 53.8 9.7 92 188-282 103-197 (306)
269 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.019 6.7E-07 63.3 4.7 43 166-212 22-64 (500)
270 2xxa_A Signal recognition part 94.8 0.1 3.6E-06 56.4 10.3 24 188-211 99-122 (433)
271 1pgv_A TMD-1, tropomodulin TMD 94.8 0.031 1.1E-06 52.9 5.4 64 585-648 37-111 (197)
272 4g1u_C Hemin import ATP-bindin 94.8 0.11 3.8E-06 52.2 9.9 22 190-211 38-59 (266)
273 1odf_A YGR205W, hypothetical 3 94.7 0.026 8.9E-07 57.6 5.2 26 186-211 28-53 (290)
274 4a1f_A DNAB helicase, replicat 94.7 0.077 2.6E-06 55.1 8.8 53 190-246 47-99 (338)
275 3kb2_A SPBC2 prophage-derived 94.6 0.015 5E-07 54.4 2.6 22 190-211 2-23 (173)
276 1zp6_A Hypothetical protein AT 94.6 0.018 6.3E-07 54.8 3.4 23 190-212 10-32 (191)
277 3hws_A ATP-dependent CLP prote 94.6 0.02 7E-07 60.9 4.1 46 167-212 16-74 (363)
278 3lw7_A Adenylate kinase relate 94.5 0.017 5.8E-07 54.1 3.0 20 190-209 2-21 (179)
279 2r6a_A DNAB helicase, replicat 94.4 0.56 1.9E-05 51.3 15.3 51 190-243 204-254 (454)
280 3ice_A Transcription terminati 94.4 0.015 5.3E-07 60.5 2.5 53 177-231 163-216 (422)
281 1qhx_A CPT, protein (chloramph 94.4 0.019 6.4E-07 54.0 3.0 22 190-211 4-25 (178)
282 1ly1_A Polynucleotide kinase; 94.3 0.021 7.2E-07 53.7 3.2 22 190-211 3-24 (181)
283 1kgd_A CASK, peripheral plasma 94.3 0.018 6.2E-07 54.3 2.6 22 190-211 6-27 (180)
284 3vaa_A Shikimate kinase, SK; s 94.2 0.019 6.5E-07 55.2 2.6 23 189-211 25-47 (199)
285 1ixz_A ATP-dependent metallopr 94.1 0.026 9E-07 56.6 3.5 48 165-212 15-72 (254)
286 3uie_A Adenylyl-sulfate kinase 94.1 0.027 9.3E-07 54.1 3.4 23 189-211 25-47 (200)
287 3e70_C DPA, signal recognition 94.1 0.18 6.2E-06 52.2 9.8 24 188-211 128-151 (328)
288 1kag_A SKI, shikimate kinase I 94.0 0.02 6.9E-07 53.5 2.4 22 190-211 5-26 (173)
289 1z47_A CYSA, putative ABC-tran 94.0 0.23 7.9E-06 51.9 10.6 22 190-211 42-63 (355)
290 4gp7_A Metallophosphoesterase; 94.0 0.027 9.1E-07 52.6 3.2 22 190-211 10-31 (171)
291 1fx0_B ATP synthase beta chain 94.0 0.14 4.9E-06 55.3 9.1 102 178-281 155-276 (498)
292 2ck3_D ATP synthase subunit be 94.0 0.1 3.5E-06 56.1 7.9 64 177-242 142-206 (482)
293 1pzn_A RAD51, DNA repair and r 93.9 0.14 4.7E-06 53.9 8.8 93 189-282 131-242 (349)
294 1sky_E F1-ATPase, F1-ATP synth 93.9 0.07 2.4E-06 57.6 6.5 40 191-231 153-192 (473)
295 1knq_A Gluconate kinase; ALFA/ 93.9 0.034 1.2E-06 52.1 3.6 23 189-211 8-30 (175)
296 3lda_A DNA repair protein RAD5 93.9 0.13 4.6E-06 54.8 8.6 55 190-245 179-237 (400)
297 3trf_A Shikimate kinase, SK; a 93.8 0.025 8.6E-07 53.5 2.6 22 190-211 6-27 (185)
298 1nks_A Adenylate kinase; therm 93.8 0.031 1.1E-06 53.3 3.2 22 190-211 2-23 (194)
299 3rlf_A Maltose/maltodextrin im 93.8 0.27 9.2E-06 51.8 10.5 22 190-211 30-51 (381)
300 3tlx_A Adenylate kinase 2; str 93.8 0.041 1.4E-06 54.7 4.1 38 174-211 14-51 (243)
301 3llm_A ATP-dependent RNA helic 93.7 0.3 1E-05 48.1 10.4 33 174-210 65-97 (235)
302 2ffh_A Protein (FFH); SRP54, s 93.7 0.19 6.4E-06 54.0 9.4 23 189-211 98-120 (425)
303 3tr0_A Guanylate kinase, GMP k 93.7 0.031 1.1E-06 53.9 3.1 22 190-211 8-29 (205)
304 1ye8_A Protein THEP1, hypothet 93.7 0.033 1.1E-06 52.3 3.1 22 191-212 2-23 (178)
305 2bdt_A BH3686; alpha-beta prot 93.7 0.035 1.2E-06 52.8 3.4 22 190-211 3-24 (189)
306 2ga8_A Hypothetical 39.9 kDa p 93.7 0.051 1.8E-06 56.4 4.8 43 169-211 2-46 (359)
307 2it1_A 362AA long hypothetical 93.7 0.3 1E-05 51.3 10.7 22 190-211 30-51 (362)
308 2rhm_A Putative kinase; P-loop 93.7 0.035 1.2E-06 52.9 3.3 23 189-211 5-27 (193)
309 1ex7_A Guanylate kinase; subst 93.6 0.024 8.2E-07 53.4 2.0 22 190-211 2-23 (186)
310 4eun_A Thermoresistant glucoki 93.6 0.031 1.1E-06 53.7 2.9 23 189-211 29-51 (200)
311 3jvv_A Twitching mobility prot 93.6 0.057 1.9E-06 56.8 5.1 111 190-312 124-234 (356)
312 3a00_A Guanylate kinase, GMP k 93.6 0.026 8.8E-07 53.6 2.2 22 190-211 2-23 (186)
313 1iy2_A ATP-dependent metallopr 93.6 0.035 1.2E-06 56.6 3.3 50 163-212 37-96 (278)
314 3asz_A Uridine kinase; cytidin 93.6 0.037 1.3E-06 53.7 3.4 23 189-211 6-28 (211)
315 3t61_A Gluconokinase; PSI-biol 93.5 0.028 9.4E-07 54.2 2.4 22 190-211 19-40 (202)
316 3tau_A Guanylate kinase, GMP k 93.5 0.032 1.1E-06 54.0 2.7 24 189-212 8-31 (208)
317 2ze6_A Isopentenyl transferase 93.5 0.036 1.2E-06 55.5 3.2 22 190-211 2-23 (253)
318 1gvn_B Zeta; postsegregational 93.5 0.061 2.1E-06 54.9 4.9 24 188-211 32-55 (287)
319 2px0_A Flagellar biosynthesis 93.5 0.13 4.5E-06 52.5 7.4 23 189-211 105-127 (296)
320 3kl4_A SRP54, signal recogniti 93.4 0.18 6.1E-06 54.2 8.7 24 188-211 96-119 (433)
321 3b85_A Phosphate starvation-in 93.4 0.056 1.9E-06 52.1 4.3 30 178-211 15-44 (208)
322 2yyz_A Sugar ABC transporter, 93.4 0.32 1.1E-05 51.0 10.4 22 190-211 30-51 (359)
323 1zuh_A Shikimate kinase; alpha 93.4 0.033 1.1E-06 51.7 2.6 23 189-211 7-29 (168)
324 1um8_A ATP-dependent CLP prote 93.4 0.046 1.6E-06 58.5 4.1 46 166-211 21-94 (376)
325 2qt1_A Nicotinamide riboside k 93.4 0.044 1.5E-06 53.0 3.5 23 189-211 21-43 (207)
326 3tqc_A Pantothenate kinase; bi 93.4 0.057 1.9E-06 55.7 4.5 43 169-211 70-114 (321)
327 1kht_A Adenylate kinase; phosp 93.4 0.037 1.3E-06 52.6 2.9 22 190-211 4-25 (192)
328 1lvg_A Guanylate kinase, GMP k 93.3 0.03 1E-06 53.7 2.2 22 190-211 5-26 (198)
329 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.29 1E-05 50.9 9.9 104 190-309 172-275 (330)
330 2if2_A Dephospho-COA kinase; a 93.3 0.038 1.3E-06 53.2 2.9 22 190-211 2-23 (204)
331 1htw_A HI0065; nucleotide-bind 93.3 0.048 1.6E-06 49.9 3.4 22 190-211 34-55 (158)
332 1uf9_A TT1252 protein; P-loop, 93.3 0.044 1.5E-06 52.7 3.3 24 188-211 7-30 (203)
333 1g8p_A Magnesium-chelatase 38 93.3 0.041 1.4E-06 58.2 3.4 46 165-212 23-68 (350)
334 3iij_A Coilin-interacting nucl 93.2 0.03 1E-06 52.7 2.0 23 189-211 11-33 (180)
335 2j41_A Guanylate kinase; GMP, 93.2 0.04 1.4E-06 53.2 2.9 23 190-212 7-29 (207)
336 2q6t_A DNAB replication FORK h 93.2 0.29 1E-05 53.4 10.2 54 190-246 201-254 (444)
337 1jjv_A Dephospho-COA kinase; P 93.2 0.047 1.6E-06 52.7 3.4 22 190-211 3-24 (206)
338 2jaq_A Deoxyguanosine kinase; 93.2 0.041 1.4E-06 53.0 2.9 21 191-211 2-22 (205)
339 3vr4_D V-type sodium ATPase su 93.2 0.086 2.9E-06 56.4 5.5 89 191-281 153-258 (465)
340 2qor_A Guanylate kinase; phosp 93.1 0.031 1.1E-06 53.9 2.0 23 189-211 12-34 (204)
341 1xjc_A MOBB protein homolog; s 93.1 0.041 1.4E-06 50.8 2.6 23 189-211 4-26 (169)
342 1cke_A CK, MSSA, protein (cyti 93.1 0.042 1.4E-06 53.9 3.0 22 190-211 6-27 (227)
343 3gd7_A Fusion complex of cysti 93.1 0.34 1.1E-05 51.4 10.0 22 190-211 48-69 (390)
344 1tev_A UMP-CMP kinase; ploop, 93.1 0.047 1.6E-06 52.1 3.2 23 189-211 3-25 (196)
345 1uj2_A Uridine-cytidine kinase 93.1 0.046 1.6E-06 54.7 3.2 24 188-211 21-44 (252)
346 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.047 1.6E-06 54.9 3.2 23 189-211 4-26 (260)
347 1ukz_A Uridylate kinase; trans 93.0 0.05 1.7E-06 52.3 3.3 23 189-211 15-37 (203)
348 1znw_A Guanylate kinase, GMP k 93.0 0.047 1.6E-06 52.7 3.1 22 190-211 21-42 (207)
349 1ls1_A Signal recognition part 93.0 0.24 8.3E-06 50.6 8.5 23 189-211 98-120 (295)
350 1via_A Shikimate kinase; struc 93.0 0.043 1.5E-06 51.3 2.7 21 191-211 6-26 (175)
351 3ney_A 55 kDa erythrocyte memb 93.0 0.043 1.5E-06 52.1 2.6 23 189-211 19-41 (197)
352 2hf9_A Probable hydrogenase ni 93.0 0.081 2.8E-06 51.8 4.8 36 175-212 26-61 (226)
353 2p5t_B PEZT; postsegregational 92.9 0.07 2.4E-06 53.4 4.3 24 188-211 31-54 (253)
354 3cm0_A Adenylate kinase; ATP-b 92.9 0.052 1.8E-06 51.3 3.2 22 190-211 5-26 (186)
355 3umf_A Adenylate kinase; rossm 92.9 0.054 1.8E-06 52.4 3.3 24 188-211 28-51 (217)
356 3dm5_A SRP54, signal recogniti 92.9 0.31 1E-05 52.4 9.4 23 189-211 100-122 (443)
357 2bbw_A Adenylate kinase 4, AK4 92.9 0.049 1.7E-06 54.3 3.1 23 189-211 27-49 (246)
358 1y63_A LMAJ004144AAA protein; 92.9 0.049 1.7E-06 51.5 3.0 23 189-211 10-32 (184)
359 2yvu_A Probable adenylyl-sulfa 92.9 0.053 1.8E-06 51.3 3.2 23 189-211 13-35 (186)
360 3aez_A Pantothenate kinase; tr 92.8 0.056 1.9E-06 55.8 3.5 23 189-211 90-112 (312)
361 2qgz_A Helicase loader, putati 92.8 0.069 2.4E-06 55.1 4.2 54 172-227 134-189 (308)
362 3tif_A Uncharacterized ABC tra 92.8 0.078 2.7E-06 52.3 4.4 22 190-211 32-53 (235)
363 3bgw_A DNAB-like replicative h 92.8 0.25 8.6E-06 53.7 8.7 51 190-244 198-248 (444)
364 1q57_A DNA primase/helicase; d 92.7 0.4 1.4E-05 53.4 10.5 54 190-246 243-296 (503)
365 3rfe_A Platelet glycoprotein I 92.7 0.14 4.7E-06 45.1 5.3 51 570-622 12-65 (130)
366 2jeo_A Uridine-cytidine kinase 92.6 0.062 2.1E-06 53.5 3.4 23 189-211 25-47 (245)
367 2iyv_A Shikimate kinase, SK; t 92.6 0.043 1.5E-06 51.8 2.1 21 191-211 4-24 (184)
368 4a74_A DNA repair and recombin 92.6 0.18 6.1E-06 49.4 6.8 45 189-233 25-73 (231)
369 1qf9_A UMP/CMP kinase, protein 92.6 0.059 2E-06 51.2 3.2 23 189-211 6-28 (194)
370 2plr_A DTMP kinase, probable t 92.6 0.059 2E-06 52.2 3.2 22 190-211 5-26 (213)
371 3fwy_A Light-independent proto 92.6 0.061 2.1E-06 55.5 3.4 40 188-229 47-86 (314)
372 2f1r_A Molybdopterin-guanine d 92.6 0.038 1.3E-06 51.3 1.6 22 190-211 3-24 (171)
373 2pcj_A ABC transporter, lipopr 92.6 0.088 3E-06 51.5 4.3 22 190-211 31-52 (224)
374 1z6g_A Guanylate kinase; struc 92.5 0.05 1.7E-06 53.0 2.6 22 190-211 24-45 (218)
375 2wsm_A Hydrogenase expression/ 92.5 0.08 2.7E-06 51.6 4.1 39 172-212 15-53 (221)
376 2c95_A Adenylate kinase 1; tra 92.5 0.057 2E-06 51.5 2.9 23 189-211 9-31 (196)
377 2pt5_A Shikimate kinase, SK; a 92.5 0.059 2E-06 49.9 2.9 21 191-211 2-22 (168)
378 3rfe_A Platelet glycoprotein I 92.5 0.16 5.5E-06 44.6 5.6 54 592-647 11-67 (130)
379 3gfo_A Cobalt import ATP-bindi 92.5 0.088 3E-06 53.1 4.4 22 190-211 35-56 (275)
380 2grj_A Dephospho-COA kinase; T 92.5 0.066 2.3E-06 50.8 3.2 24 188-211 11-34 (192)
381 2bwj_A Adenylate kinase 5; pho 92.5 0.059 2E-06 51.6 2.9 22 190-211 13-34 (199)
382 4e22_A Cytidylate kinase; P-lo 92.4 0.061 2.1E-06 53.8 3.1 22 190-211 28-49 (252)
383 1e6c_A Shikimate kinase; phosp 92.4 0.051 1.8E-06 50.6 2.4 22 190-211 3-24 (173)
384 1s96_A Guanylate kinase, GMP k 92.4 0.064 2.2E-06 52.2 3.1 22 190-211 17-38 (219)
385 2cdn_A Adenylate kinase; phosp 92.4 0.061 2.1E-06 51.6 3.0 23 189-211 20-42 (201)
386 2vli_A Antibiotic resistance p 92.3 0.048 1.7E-06 51.4 2.1 23 189-211 5-27 (183)
387 2onk_A Molybdate/tungstate ABC 92.3 0.1 3.5E-06 51.6 4.4 22 190-211 25-46 (240)
388 2pbr_A DTMP kinase, thymidylat 92.3 0.064 2.2E-06 51.0 2.9 21 191-211 2-22 (195)
389 3p32_A Probable GTPase RV1496/ 92.3 0.11 3.9E-06 54.8 5.1 37 175-211 65-101 (355)
390 1b0u_A Histidine permease; ABC 92.3 0.098 3.3E-06 52.5 4.4 22 190-211 33-54 (262)
391 2i3b_A HCR-ntpase, human cance 92.2 0.062 2.1E-06 50.9 2.6 22 191-212 3-24 (189)
392 2pez_A Bifunctional 3'-phospho 92.1 0.079 2.7E-06 49.7 3.2 23 189-211 5-27 (179)
393 1mv5_A LMRA, multidrug resista 92.0 0.12 4.2E-06 51.2 4.7 22 190-211 29-50 (243)
394 2olj_A Amino acid ABC transpor 92.0 0.11 3.9E-06 52.0 4.4 22 190-211 51-72 (263)
395 1sgw_A Putative ABC transporte 91.9 0.099 3.4E-06 50.5 3.8 23 190-212 36-58 (214)
396 3k1j_A LON protease, ATP-depen 91.9 0.087 3E-06 60.2 4.0 43 166-212 41-83 (604)
397 1ji0_A ABC transporter; ATP bi 91.9 0.12 4E-06 51.2 4.4 22 190-211 33-54 (240)
398 2ff7_A Alpha-hemolysin translo 91.9 0.12 4E-06 51.4 4.4 22 190-211 36-57 (247)
399 1g41_A Heat shock protein HSLU 91.9 0.11 3.6E-06 56.1 4.3 46 166-211 15-72 (444)
400 2f6r_A COA synthase, bifunctio 91.9 0.09 3.1E-06 53.5 3.6 24 188-211 74-97 (281)
401 1g6h_A High-affinity branched- 91.8 0.12 4.1E-06 51.7 4.4 22 190-211 34-55 (257)
402 2ehv_A Hypothetical protein PH 91.8 0.08 2.7E-06 52.8 3.1 22 190-211 31-52 (251)
403 1gtv_A TMK, thymidylate kinase 91.8 0.049 1.7E-06 52.8 1.5 21 191-211 2-22 (214)
404 3b5x_A Lipid A export ATP-bind 91.8 0.77 2.6E-05 52.0 11.6 22 190-211 370-391 (582)
405 2z0h_A DTMP kinase, thymidylat 91.8 0.08 2.7E-06 50.5 3.0 21 191-211 2-22 (197)
406 1zd8_A GTP:AMP phosphotransfer 91.8 0.078 2.7E-06 52.0 2.9 23 189-211 7-29 (227)
407 2wwf_A Thymidilate kinase, put 91.8 0.08 2.7E-06 51.2 2.9 23 189-211 10-32 (212)
408 1zu4_A FTSY; GTPase, signal re 91.7 0.15 5.1E-06 52.7 5.1 24 188-211 104-127 (320)
409 2j37_W Signal recognition part 91.7 0.71 2.4E-05 50.7 10.7 24 188-211 100-123 (504)
410 3fb4_A Adenylate kinase; psych 91.7 0.082 2.8E-06 51.4 3.0 21 191-211 2-22 (216)
411 1m7g_A Adenylylsulfate kinase; 91.7 0.09 3.1E-06 50.9 3.2 23 189-211 25-47 (211)
412 2ixe_A Antigen peptide transpo 91.7 0.13 4.3E-06 52.0 4.4 22 190-211 46-67 (271)
413 1rj9_A FTSY, signal recognitio 91.6 0.086 2.9E-06 54.1 3.1 23 189-211 102-124 (304)
414 3b9q_A Chloroplast SRP recepto 91.6 0.096 3.3E-06 53.7 3.5 23 189-211 100-122 (302)
415 1aky_A Adenylate kinase; ATP:A 91.6 0.084 2.9E-06 51.5 3.0 22 190-211 5-26 (220)
416 1tue_A Replication protein E1; 91.6 0.11 3.6E-06 49.3 3.4 37 175-212 45-81 (212)
417 1nn5_A Similar to deoxythymidy 91.6 0.085 2.9E-06 51.2 2.9 22 190-211 10-31 (215)
418 1vht_A Dephospho-COA kinase; s 91.5 0.099 3.4E-06 50.9 3.3 23 189-211 4-26 (218)
419 2yz2_A Putative ABC transporte 91.5 0.13 4.6E-06 51.6 4.4 22 190-211 34-55 (266)
420 1np6_A Molybdopterin-guanine d 91.5 0.083 2.8E-06 49.1 2.6 23 189-211 6-28 (174)
421 3lnc_A Guanylate kinase, GMP k 91.5 0.064 2.2E-06 52.8 2.0 22 190-211 28-50 (231)
422 3cf2_A TER ATPase, transitiona 91.5 0.21 7.2E-06 58.1 6.4 50 163-212 474-534 (806)
423 3dl0_A Adenylate kinase; phosp 91.5 0.089 3.1E-06 51.1 3.0 21 191-211 2-22 (216)
424 2v54_A DTMP kinase, thymidylat 91.5 0.091 3.1E-06 50.5 3.0 23 190-212 5-27 (204)
425 1sq5_A Pantothenate kinase; P- 91.4 0.1 3.5E-06 53.9 3.5 23 189-211 80-102 (308)
426 1zak_A Adenylate kinase; ATP:A 91.3 0.071 2.4E-06 52.1 2.1 23 189-211 5-27 (222)
427 3nwj_A ATSK2; P loop, shikimat 91.3 0.078 2.7E-06 52.7 2.4 22 190-211 49-70 (250)
428 1cr0_A DNA primase/helicase; R 91.3 0.25 8.5E-06 50.7 6.3 50 190-243 36-86 (296)
429 3gqb_B V-type ATP synthase bet 91.2 0.17 5.7E-06 54.2 4.9 91 191-281 149-261 (464)
430 3d3q_A TRNA delta(2)-isopenten 91.2 0.1 3.5E-06 54.0 3.2 22 190-211 8-29 (340)
431 2d2e_A SUFC protein; ABC-ATPas 91.2 0.1 3.5E-06 52.0 3.1 22 190-211 30-51 (250)
432 2ihy_A ABC transporter, ATP-bi 91.2 0.15 5.1E-06 51.6 4.4 22 190-211 48-69 (279)
433 2r9v_A ATP synthase subunit al 91.1 0.36 1.2E-05 52.3 7.4 88 190-281 176-277 (515)
434 3r20_A Cytidylate kinase; stru 91.1 0.1 3.6E-06 50.9 3.0 22 190-211 10-31 (233)
435 2zu0_C Probable ATP-dependent 91.1 0.11 3.7E-06 52.4 3.1 23 190-212 47-69 (267)
436 3l0o_A Transcription terminati 91.0 0.57 2E-05 48.8 8.4 53 176-230 163-216 (427)
437 2qi9_C Vitamin B12 import ATP- 91.0 0.11 3.7E-06 51.6 3.1 22 190-211 27-48 (249)
438 3ake_A Cytidylate kinase; CMP 90.9 0.11 3.7E-06 50.0 3.0 21 191-211 4-24 (208)
439 2ghi_A Transport protein; mult 90.9 0.11 3.8E-06 52.0 3.1 23 190-212 47-69 (260)
440 3oaa_A ATP synthase subunit al 90.9 0.4 1.4E-05 51.8 7.3 58 178-240 152-212 (513)
441 3be4_A Adenylate kinase; malar 90.9 0.1 3.5E-06 50.8 2.6 22 190-211 6-27 (217)
442 2nq2_C Hypothetical ABC transp 90.8 0.12 4.1E-06 51.5 3.1 23 190-212 32-54 (253)
443 3a8t_A Adenylate isopentenyltr 90.8 0.13 4.5E-06 53.0 3.4 24 189-212 40-63 (339)
444 2qe7_A ATP synthase subunit al 90.8 0.38 1.3E-05 52.0 7.2 99 178-281 152-264 (502)
445 3sr0_A Adenylate kinase; phosp 90.7 0.12 4.1E-06 49.6 3.0 74 191-282 2-85 (206)
446 3crm_A TRNA delta(2)-isopenten 90.7 0.12 4.2E-06 53.0 3.2 22 190-211 6-27 (323)
447 1svm_A Large T antigen; AAA+ f 90.7 0.18 6E-06 53.4 4.4 36 176-211 156-191 (377)
448 2zej_A Dardarin, leucine-rich 90.7 0.12 4.1E-06 48.7 2.9 22 191-212 4-25 (184)
449 2og2_A Putative signal recogni 90.7 0.13 4.5E-06 53.9 3.4 23 189-211 157-179 (359)
450 2xb4_A Adenylate kinase; ATP-b 90.6 0.12 4.1E-06 50.5 2.9 21 191-211 2-22 (223)
451 2c61_A A-type ATP synthase non 90.6 0.17 5.8E-06 54.5 4.2 102 178-280 142-258 (469)
452 2wji_A Ferrous iron transport 90.6 0.16 5.5E-06 46.7 3.6 23 190-212 4-26 (165)
453 1e4v_A Adenylate kinase; trans 90.5 0.12 4.2E-06 50.0 2.9 21 191-211 2-22 (214)
454 3mfy_A V-type ATP synthase alp 90.5 0.32 1.1E-05 53.0 6.3 58 177-239 216-274 (588)
455 1oix_A RAS-related protein RAB 90.5 0.15 5.2E-06 48.3 3.5 24 189-212 29-52 (191)
456 3exa_A TRNA delta(2)-isopenten 90.5 0.14 4.6E-06 52.1 3.2 23 190-212 4-26 (322)
457 2eyu_A Twitching motility prot 90.4 0.14 4.7E-06 51.3 3.2 109 190-311 26-135 (261)
458 2dyk_A GTP-binding protein; GT 90.3 0.16 5.4E-06 46.3 3.3 23 190-212 2-24 (161)
459 1fx0_A ATP synthase alpha chai 90.2 0.29 9.9E-06 53.1 5.6 87 190-282 164-266 (507)
460 3sop_A Neuronal-specific septi 90.2 0.14 4.7E-06 51.7 2.9 21 191-211 4-24 (270)
461 2v9p_A Replication protein E1; 90.2 0.14 4.9E-06 52.2 3.1 22 190-211 127-148 (305)
462 1tq4_A IIGP1, interferon-induc 90.1 0.15 5E-06 54.6 3.3 24 188-211 68-91 (413)
463 1fzq_A ADP-ribosylation factor 90.1 0.22 7.4E-06 46.7 4.1 25 188-212 15-39 (181)
464 3nh6_A ATP-binding cassette SU 90.1 0.13 4.4E-06 52.7 2.7 22 190-211 81-102 (306)
465 1ltq_A Polynucleotide kinase; 90.1 0.15 5.1E-06 52.5 3.2 22 190-211 3-24 (301)
466 1yrb_A ATP(GTP)binding protein 90.1 0.16 5.5E-06 51.0 3.4 23 189-211 14-36 (262)
467 1ak2_A Adenylate kinase isoenz 89.9 0.15 5.1E-06 50.2 3.0 22 190-211 17-38 (233)
468 3qf4_A ABC transporter, ATP-bi 89.9 0.88 3E-05 51.5 9.7 22 190-211 370-391 (587)
469 3foz_A TRNA delta(2)-isopenten 89.9 0.16 5.6E-06 51.5 3.2 23 189-211 10-32 (316)
470 2qmh_A HPR kinase/phosphorylas 89.9 0.18 6E-06 47.5 3.2 23 190-212 35-57 (205)
471 4eaq_A DTMP kinase, thymidylat 89.9 0.24 8.3E-06 48.5 4.4 24 189-212 26-49 (229)
472 2dr3_A UPF0273 protein PH0284; 89.8 0.2 6.8E-06 49.7 3.8 38 190-229 24-61 (247)
473 2ck3_A ATP synthase subunit al 89.7 0.42 1.4E-05 51.8 6.4 104 177-281 151-272 (510)
474 2vp4_A Deoxynucleoside kinase; 89.7 0.13 4.6E-06 50.4 2.4 23 189-211 20-42 (230)
475 2f9l_A RAB11B, member RAS onco 89.7 0.19 6.6E-06 47.9 3.5 24 189-212 5-28 (199)
476 2yhs_A FTSY, cell division pro 89.6 0.18 6E-06 54.9 3.4 41 189-232 293-333 (503)
477 3fvq_A Fe(3+) IONS import ATP- 89.6 0.25 8.5E-06 51.7 4.4 22 190-211 31-52 (359)
478 1nlf_A Regulatory protein REPA 89.5 0.17 5.8E-06 51.4 3.1 22 190-211 31-52 (279)
479 2wjg_A FEOB, ferrous iron tran 89.5 0.22 7.4E-06 46.9 3.6 24 189-212 7-30 (188)
480 1u0j_A DNA replication protein 89.5 0.27 9.4E-06 48.8 4.4 35 177-211 92-126 (267)
481 3zvl_A Bifunctional polynucleo 89.4 0.16 5.5E-06 54.9 2.9 25 188-212 257-281 (416)
482 3cmu_A Protein RECA, recombina 89.4 0.49 1.7E-05 60.3 7.6 86 189-281 1427-1515(2050)
483 2bbs_A Cystic fibrosis transme 89.4 0.18 6.1E-06 51.3 3.1 23 190-212 65-87 (290)
484 1nij_A Hypothetical protein YJ 89.4 0.18 6.1E-06 52.3 3.1 25 188-212 3-27 (318)
485 4a82_A Cystic fibrosis transme 89.3 0.68 2.3E-05 52.4 8.2 22 190-211 368-389 (578)
486 2ged_A SR-beta, signal recogni 89.1 0.22 7.4E-06 47.1 3.4 24 189-212 48-71 (193)
487 1q3t_A Cytidylate kinase; nucl 89.1 0.17 6E-06 49.8 2.7 24 188-211 15-38 (236)
488 3kta_A Chromosome segregation 89.1 0.2 7E-06 46.9 3.1 21 191-211 28-48 (182)
489 2ce2_X GTPase HRAS; signaling 89.0 0.19 6.5E-06 45.9 2.8 22 191-212 5-26 (166)
490 4akg_A Glutathione S-transfera 89.0 2.4 8.3E-05 56.1 13.8 223 192-474 1270-1531(2695)
491 2qm8_A GTPase/ATPase; G protei 88.9 0.32 1.1E-05 50.8 4.7 23 189-211 55-77 (337)
492 1a7j_A Phosphoribulokinase; tr 88.9 0.11 3.8E-06 52.9 1.2 23 189-211 5-27 (290)
493 2nzj_A GTP-binding protein REM 88.8 0.22 7.4E-06 46.1 3.1 24 189-212 4-27 (175)
494 2lkc_A Translation initiation 88.7 0.3 1E-05 45.3 4.0 24 189-212 8-31 (178)
495 2gj8_A MNME, tRNA modification 88.7 0.22 7.4E-06 46.3 2.9 23 190-212 5-27 (172)
496 3d31_A Sulfate/molybdate ABC t 88.6 0.28 9.7E-06 51.1 4.0 22 190-211 27-48 (348)
497 2iw3_A Elongation factor 3A; a 88.5 2 6.8E-05 51.0 11.5 120 190-313 462-609 (986)
498 2v3c_C SRP54, signal recogniti 88.4 0.23 7.7E-06 53.7 3.2 23 189-211 99-121 (432)
499 3q72_A GTP-binding protein RAD 88.4 0.23 7.7E-06 45.6 2.9 22 191-212 4-25 (166)
500 3con_A GTPase NRAS; structural 88.4 0.22 7.5E-06 47.0 2.8 23 190-212 22-44 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.7e-47 Score=433.37 Aligned_cols=319 Identities=16% Similarity=0.204 Sum_probs=258.7
Q ss_pred eechhhHHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhc--CccccCCCCceEEEEeCCCC--CHHHHHHHHHHH
Q 038220 169 VGLGEDMMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQ--SSDVKKHFDCCAWAYVSQEY--RKWEILQDLCKK 243 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~ 243 (866)
|||++++++|.++|..+ ++..++|+|+||||+||||||+++|+ |.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 44589999999999999999999998 67899999999999999985 789999999999
Q ss_pred HhcCCC----CccccCCHHHHHHHHHHHhccC-cEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccCCC
Q 038220 244 VLGLGK----ADLDKMHMEDMKEELSNFLQER-RFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYADPG 318 (866)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 318 (866)
+..... ......+.+.+...+++.|+++ |+||||||||+.+.+ .+.. .+||+||||||+..++..++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 976421 1223345677889999999996 999999999998754 2211 1699999999999999877544
Q ss_pred CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHHHhhhh
Q 038220 319 SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVLQSVQW 398 (866)
Q Consensus 319 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l~~~~~ 398 (866)
..+|+|++|+.++||+||.+.+|... .++.+.+++++|+++|+|+||||+++|+.++.+ +. +|...+....+
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~--~w-~~~~~l~~~l~ 356 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP-----VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK--TF-EKMAQLNNKLE 356 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS--SH-HHHHHHHHHHH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc--hH-HHHHHhHHHhh
Confidence 36799999999999999999987643 246788899999999999999999999999765 22 33344443332
Q ss_pred hccCCChhHHHHHHHhcCCCCCchhhHHh-----------HhccCCCCcccchHHHHHHHHHc--CcccCCC-CCCHHHH
Q 038220 399 QLNLNPAKCMDILKLSYQDLPYYLKPCFL-----------YIGLFPEDFEIAARKLILLWVAE--GFVQPRG-IEPLEDV 464 (866)
Q Consensus 399 ~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~a~fp~~~~i~~~~li~~W~ae--g~i~~~~-~~~~e~~ 464 (866)
.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ +...+++
T Consensus 357 ~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 357 SR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred cc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 22 2256888999999999999999999 999999999999 8999999 9998765 6677888
Q ss_pred HHHHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHHHHhhccccc
Q 038220 465 AEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKAKEDQF 511 (866)
Q Consensus 465 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~e~~ 511 (866)
++ ||++|+++||++....+ ...+|+|||+||++|+.++.++++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 87 99999999999987643 335799999999999998887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.5e-38 Score=363.39 Aligned_cols=290 Identities=22% Similarity=0.301 Sum_probs=233.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
+..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345999999999999998743 3689999999999999999999987778899986 99999999999888888887754
Q ss_pred hcCC----CC-c---cccCCHHHHHHHHHHHh---ccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 245 LGLG----KA-D---LDKMHMEDMKEELSNFL---QERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 245 ~~~~----~~-~---~~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
.... .. + ....+.+.+...+++.| .++|+||||||||+.+.|+.+. .||+||||||++.++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 3321 00 0 01123455667777766 6799999999999988887652 6899999999999886
Q ss_pred ccCCCCCCeecc------CCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHH
Q 038220 314 YADPGSPPYELC------LLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYS 387 (866)
Q Consensus 314 ~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~ 387 (866)
.+... ..++++ +|+.+|||+||.+.. ... . .++..+| |+|+||||+++|+.|+.+..+.+
T Consensus 280 ~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~------~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 280 FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR------P---QDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC------T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hcCCC-eEEEecCccccCCcCHHHHHHHHHHHc-CCC------H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 43322 456777 999999999999883 321 1 1233333 99999999999999998865688
Q ss_pred HHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCch-hhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHHHH
Q 038220 388 EWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYL-KPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAE 466 (866)
Q Consensus 388 ~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~ 466 (866)
+|... ....+..++.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.++
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 89753 23679999999999999999 99999999999999999999999999887 24588
Q ss_pred HHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHH
Q 038220 467 DYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELA 502 (866)
Q Consensus 467 ~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~ 502 (866)
.+|++|+++||++... ....|+|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 9999999999999742 124799999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-37 Score=394.59 Aligned_cols=318 Identities=21% Similarity=0.307 Sum_probs=255.3
Q ss_pred CCCCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCC--HHHH
Q 038220 161 PHTSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDV-KKHF-DCCAWAYVSQEYR--KWEI 236 (866)
Q Consensus 161 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~~ 236 (866)
.+..+..||||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 3355678999999999999999876667899999999999999999999997443 4545 5688999998543 3344
Q ss_pred HHHHHHHHhcCCC-CccccCCHHHHHHHHHHHhccC--cEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 237 LQDLCKKVLGLGK-ADLDKMHMEDMKEELSNFLQER--RFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 237 ~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
+..++..+..... ......+.+++...++..+.++ |+||||||||+...|..+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 6666666665421 2233456788999999999877 999999999998765543 57899999999999986
Q ss_pred ccCCCCCCeeccC-CChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHH
Q 038220 314 YADPGSPPYELCL-LNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKV 392 (866)
Q Consensus 314 ~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~ 392 (866)
.+......+.+.+ |+.+++++||...++... +...+++++|+++|+|+||||+++|++|+.+.. .|...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-------~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~---~~~~~ 341 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK-------EDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN---RWAYY 341 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-------TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS---CHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-------hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh---HHHHH
Confidence 5544557899996 999999999998885432 233467899999999999999999999988764 46666
Q ss_pred HHhhhhhcc----C---CC-hhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHHH
Q 038220 393 LQSVQWQLN----L---NP-AKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLEDV 464 (866)
Q Consensus 393 l~~~~~~~~----~---~~-~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~ 464 (866)
++.+..... . .. ..+..++.+||+.||+++|.||+|||+||+++.|+...++.+|.++ ++.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~ 410 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEE 410 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHH
Confidence 665543221 1 12 5799999999999999999999999999999999999999999654 577
Q ss_pred HHHHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHHHHhhccc
Q 038220 465 AEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKAKED 509 (866)
Q Consensus 465 ~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~~~e 509 (866)
++.++++|++++|++.... ++..+|+||+++|++++..+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 8999999999999986542 34457999999999999887665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=331.09 Aligned_cols=310 Identities=23% Similarity=0.327 Sum_probs=241.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccc-cCCC-CceEEEEeCCCCCHHHHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDV-KKHF-DCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~~i 240 (866)
..+..||||++++++|.+++....+..++|+|+||||+||||||++++++..+ ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34567999999999999999865556789999999999999999999997555 7889 47999999875 344444444
Q ss_pred HH---HHhcCC-CCccccCCHHHHHHHHHHHhcc--CcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhc
Q 038220 241 CK---KVLGLG-KADLDKMHMEDMKEELSNFLQE--RRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVY 314 (866)
Q Consensus 241 ~~---~~~~~~-~~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 314 (866)
.. .+.... .......+.+.+...++..+.+ +++||||||+|+...++. + ..|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHh
Confidence 33 333211 1122344667788888888876 789999999998654432 2 568999999999998765
Q ss_pred cCCCCCCeec---cCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHH
Q 038220 315 ADPGSPPYEL---CLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLK 391 (866)
Q Consensus 315 ~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~ 391 (866)
+.. ..+++ ++|+.+++++||...++... ....+.+.+|+++|+|+|||+..+|+.++.... .|..
T Consensus 273 ~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~~-------~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~---~w~~ 340 (591)
T 1z6t_A 273 VMG--PKYVVPVESSLGKEKGLEILSLFVNMKK-------ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN---RWEY 340 (591)
T ss_dssp CCS--CEEEEECCSSCCHHHHHHHHHHHHTSCG-------GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT---CHHH
T ss_pred cCC--CceEeecCCCCCHHHHHHHHHHHhCCCc-------ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch---hHHH
Confidence 442 34555 58999999999999886421 122357889999999999999999999987643 5877
Q ss_pred HHHhhhhhccC--------CChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCCCHHH
Q 038220 392 VLQSVQWQLNL--------NPAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIEPLED 463 (866)
Q Consensus 392 ~l~~~~~~~~~--------~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~e~ 463 (866)
.++.+...... ....+..++..||+.||++.|.||++||+||+++.|+...+..+|.++ .+
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~ 409 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TE 409 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HH
Confidence 77766533211 125799999999999999999999999999999999999999999543 45
Q ss_pred HHHHHHHHHhhCCccccccccCCCcEeEEEEcHHHHHHHHHhh
Q 038220 464 VAEDYLEELVGRSMVEPASRKSNGKIKTIRVHDLLRELAISKA 506 (866)
Q Consensus 464 ~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~hdlv~~~~~~~~ 506 (866)
.+..++++|+++||++.... +....|+||+++|++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 68899999999999985432 33457999999999998773
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=6.8e-27 Score=280.15 Aligned_cols=298 Identities=18% Similarity=0.158 Sum_probs=139.9
Q ss_pred CCeeEEEEecCCccc-cCcccccCCCCceEEEeeCCCCc-cccccccCCCCccEEecCCCccc-cccccccccccccEEe
Q 038220 565 YKLLQVLDLEGVYMA-LIDSSIGNLIHLRYLDLRKTWLK-MLPSSMGNLFNLQSLDLSSTLVD-PIPLVIWKMQQLKHVY 641 (866)
Q Consensus 565 ~~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~ 641 (866)
++.|+.|++++|.+. .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 344555555555543 44555555555555555555554 44555555555555555555333 4455555555555555
Q ss_pred ccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 642 FSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
+++|...+..|..++.+++|+.|++.++.....+|..++.+++|+.|++++|... ..++..+..+++|+.|++++|.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS--GNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE--EECCGGGGGCTTCCEEECCSSEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc--CcCCHHHcCCCCCCEEECCCCcc
Confidence 5555555445555555555555555555444444444555555555555555432 12234455555566666555432
Q ss_pred ccc---------------------------------------------------------------------ccCCccCC
Q 038220 722 YTV---------------------------------------------------------------------DLSDVQNF 732 (866)
Q Consensus 722 ~~~---------------------------------------------------------------------~l~~~~~~ 732 (866)
... ..|..+..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 100 00111222
Q ss_pred CCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCccccccee
Q 038220 733 PPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRL 812 (866)
Q Consensus 733 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 812 (866)
+++|+.|+|++|.+++..+..++.+++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|.....+|...+.+++|+.|
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 3445555555555555555555555555555555555544 444445555555555555554444444445555555555
Q ss_pred eEeecccCCccCCCccCCCCCCEEEEeCCCHHH---HHHHhhccCCceeeeeccCCC
Q 038220 813 EIIECMRLKIVPSGLWPLTTLSNLKLGYMPFDF---DLMAQDRRGENWYKLEHVLPM 866 (866)
Q Consensus 813 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 866 (866)
++++|+....+|.+ ..+.++....+.+||.-. ...|....+++|.+++|+|.+
T Consensus 710 ~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 710 DLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp ECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred ECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 55555544444432 222222222233332100 014566788999999999863
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=254.20 Aligned_cols=304 Identities=21% Similarity=0.160 Sum_probs=246.4
Q ss_pred CCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEe
Q 038220 543 SSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLD 618 (866)
Q Consensus 543 ~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~ 618 (866)
.++++.|.+.++ ....+..|.+++.|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.++.+|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 358899999887 344567889999999999999998765 77899999999999999999999864 78999999999
Q ss_pred cCCCccccc-cccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchh
Q 038220 619 LSSTLVDPI-PLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILH 697 (866)
Q Consensus 619 l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 697 (866)
+++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++.++......+..+.++++|+.|++.+|....
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 999977766 5578999999999999998876667789999999999999986666556668999999999999987532
Q ss_pred HHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEE
Q 038220 698 EEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVS 777 (866)
Q Consensus 698 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 777 (866)
. ....+..+++|+.|++++|.... .+|.......+|++|+|++|.+...+...++.+++|+.|+|++|.+.+ ..+.
T Consensus 191 ~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 266 (477)
T 2id5_A 191 I--RDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGS 266 (477)
T ss_dssp E--CTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTT
T ss_pred e--ChhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChh
Confidence 2 12357788999999999876533 344444445699999999999987666678999999999999998763 2234
Q ss_pred CCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCC-CccCCCCCCEEEEeCCCHHHHHHHhh
Q 038220 778 SSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPS-GLWPLTTLSNLKLGYMPFDFDLMAQD 851 (866)
Q Consensus 778 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 851 (866)
.+.++++|+.|+|++|......+..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++||+...+.+.|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 57889999999999987655445567789999999999996 444554 56889999999999998654443333
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=6.6e-25 Score=247.48 Aligned_cols=318 Identities=16% Similarity=0.099 Sum_probs=228.1
Q ss_pred cCCCceEEEEecCC-----CcCCCCCCCceEEEecCCC---CCccccccCCCeeEEEEecCCccccC-cccccCCCCceE
Q 038220 523 FLAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDIS---EPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRY 593 (866)
Q Consensus 523 ~~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~~---~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~ 593 (866)
.+.+++++.+..+. +..+..+++|++|.+.++. ...+..|..++.|++|++++|.+..+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 34567788777665 3346678888888888772 23345688888888888888887644 677888888888
Q ss_pred EEeeCCCCcc-cccc--ccCCCCccEEecCCCccccc-ccc-ccccccccEEeccCccccccCCCCCCCC--CCCceecc
Q 038220 594 LDLRKTWLKM-LPSS--MGNLFNLQSLDLSSTLVDPI-PLV-IWKMQQLKHVYFSEFREMVVNPPADASL--PNLQTLLG 666 (866)
Q Consensus 594 L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~~ 666 (866)
|++++|.++. +|.. ++++.+|++|++++|.+..+ |.. +..+++|++|++++|......|..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 8888888874 4444 78888888888888877766 444 7788888888888887765555555554 45566665
Q ss_pred eeecCCcchhH--------hhccccCCCeEEEEcccchhH--HHHHHhhc------------------------------
Q 038220 667 ICICETSCVEQ--------GLDKLLNLRELGLHGDLILHE--EALCKWIY------------------------------ 706 (866)
Q Consensus 667 ~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~~--~~l~~~l~------------------------------ 706 (866)
..+......+. .+..+++|+.|++++|..... ..+...+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 55433211110 122446777777777754221 11111100
Q ss_pred -----CCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCC
Q 038220 707 -----NLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGG 781 (866)
Q Consensus 707 -----~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 781 (866)
..++|+.|++++|.+ ....|.++..+++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+ ..+..+.+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~ 345 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFEN 345 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTT
T ss_pred ccccccccCceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcC
Confidence 125678888877654 34467778888999999999999987777789999999999999988753 33456788
Q ss_pred CccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCC-CccCCCCCCEEEEeCCCH
Q 038220 782 FSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPS-GLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 782 ~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~ 843 (866)
+++|++|++++|......+..+..+++|+.|++++|.. +.+|. .+..+++|+.|++++|++
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCc
Confidence 99999999999876444455678899999999999864 44554 568899999999998874
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.7e-24 Score=234.71 Aligned_cols=299 Identities=19% Similarity=0.126 Sum_probs=228.8
Q ss_pred CCCceEEEEecCC---CcCCCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCC
Q 038220 524 LAKARRLAIHFGI---PSQTRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKT 599 (866)
Q Consensus 524 ~~~~r~l~i~~~~---~~~~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 599 (866)
...++++.+.... .+.+..+++|++|.+.++. ...+. +..++.|++|++++|.+..+| .+.++++|++|++++|
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence 4556777776655 3345678899999998872 22333 888899999999999888775 5888999999999999
Q ss_pred CCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhh
Q 038220 600 WLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGL 679 (866)
Q Consensus 600 ~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l 679 (866)
.+..+|. +..+++|++|++++|.....+..+..+++|++|++++|... ..+. +..+++|+.|++.++.. ..++. +
T Consensus 121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~ 195 (347)
T 4fmz_A 121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQI-EDISP-L 195 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCC-CCCGG-G
T ss_pred cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcc-ccccc-c
Confidence 9988876 88899999999998833333445889999999999988765 3333 77888999999888743 33444 7
Q ss_pred ccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCC
Q 038220 680 DKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPN 759 (866)
Q Consensus 680 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~ 759 (866)
..+++|+.|++.++....... +..+++|+.|++++|.+. .++. +..+++|++|++++|.+... +.+..+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~ 266 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKIT--DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTK 266 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccC--CCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCC
Confidence 788999999999887543221 677889999999987643 2333 66778999999999987653 56888999
Q ss_pred CCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEe
Q 038220 760 LRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLG 839 (866)
Q Consensus 760 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 839 (866)
|+.|++++|.+.+. ..+..+++|+.|++++|......+..++.+|+|+.|++++|+... ++. +..+++|+.|+++
T Consensus 267 L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 267 LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFA 341 (347)
T ss_dssp CCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSS
T ss_pred cCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehh
Confidence 99999998887752 346788999999999987665555556788999999999998544 444 7889999999999
Q ss_pred CCCH
Q 038220 840 YMPF 843 (866)
Q Consensus 840 ~~~~ 843 (866)
+|++
T Consensus 342 ~N~i 345 (347)
T 4fmz_A 342 NQVI 345 (347)
T ss_dssp CC--
T ss_pred hhcc
Confidence 9984
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2e-25 Score=267.36 Aligned_cols=276 Identities=23% Similarity=0.160 Sum_probs=196.2
Q ss_pred CCCeeEEEEecCCccc-cCcccccCC-CCceEEEeeCCCCc-cccccccCCCCccEEecCCCccc-ccccc-cccccccc
Q 038220 564 EYKLLQVLDLEGVYMA-LIDSSIGNL-IHLRYLDLRKTWLK-MLPSSMGNLFNLQSLDLSSTLVD-PIPLV-IWKMQQLK 638 (866)
Q Consensus 564 ~~~~Lr~L~l~~~~~~-~lp~~i~~l-~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~-i~~l~~L~ 638 (866)
.++.|++|++++|.+. .+|..+..+ ++|++|++++|.++ .+|..++++.+|++|++++|.+. .+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 3444455555555443 455555443 56666666666655 45556666666666666666443 55544 56666666
Q ss_pred EEeccCccccccCCCCCCCCC-CCceecceeecCCcchhHhhcc--ccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEE
Q 038220 639 HVYFSEFREMVVNPPADASLP-NLQTLLGICICETSCVEQGLDK--LLNLRELGLHGDLILHEEALCKWIYNLKGLQCLK 715 (866)
Q Consensus 639 ~L~l~~~~~~~~~p~~~~~l~-~L~~L~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 715 (866)
+|++++|...+.+|..+..++ +|++|++.++.....++..+.. +++|+.|++.+|.... .++..+..+++|+.|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLH 424 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEE
Confidence 666666655555565555555 6666666555433333333444 5677777777765421 2455677888999999
Q ss_pred eeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 716 MQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 716 l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
+++|.+ ....|..+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+ .++..+.++++|++|++++|..
T Consensus 425 Ls~N~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 425 LSFNYL-SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp CCSSEE-ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCC
T ss_pred CcCCcc-cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCcc
Confidence 988764 34567777888899999999999888888889999999999999888876 5667788999999999999987
Q ss_pred CcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 796 LERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 796 l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
...+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|++
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 777888888999999999999988778999999999999999998874
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.9e-24 Score=253.09 Aligned_cols=123 Identities=19% Similarity=0.193 Sum_probs=75.0
Q ss_pred CCCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEE
Q 038220 524 LAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLD 595 (866)
Q Consensus 524 ~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~ 595 (866)
+.+++++.+..+. ...+..+++|++|.+.++ ....+..|.+++.|++|++++|.+..+ |..++++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3456666665544 223456666777776665 233345566666677777776666544 55666666666666
Q ss_pred eeCCCCcccc-ccccCCCCccEEecCCCccc--cccccccccccccEEeccCcc
Q 038220 596 LRKTWLKMLP-SSMGNLFNLQSLDLSSTLVD--PIPLVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 596 l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~ 646 (866)
+++|.+..+| ..++++.+|++|++++|.+. .+|..+.++++|++|++++|.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 6666666554 45666666666666666544 356666666666666666554
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.1e-24 Score=258.59 Aligned_cols=306 Identities=15% Similarity=0.107 Sum_probs=213.9
Q ss_pred CCceEEEEecCC-----CcCCCCCCCceEEEecCCC---C-Cccccc-------cCCCeeEEEEecCCccccCcc--ccc
Q 038220 525 AKARRLAIHFGI-----PSQTRKSSRVRSLLFFDIS---E-PVGSIL-------EEYKLLQVLDLEGVYMALIDS--SIG 586 (866)
Q Consensus 525 ~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~~---~-~~~~~~-------~~~~~Lr~L~l~~~~~~~lp~--~i~ 586 (866)
.+++.+.+..+. +..+..+++|+.|.+.++. . .+|..+ ..++.|+.|++++|.+..+|. .++
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~ 570 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh
Confidence 456666665543 3345566777777776652 1 233322 334467777777777777776 677
Q ss_pred CCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccccccc-ccEEeccCccccccCCCCCCCCCC--Cce
Q 038220 587 NLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQ-LKHVYFSEFREMVVNPPADASLPN--LQT 663 (866)
Q Consensus 587 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~~~~l~~--L~~ 663 (866)
++++|++|+|++|.++.+| .++++++|++|++++|.+..+|..+..+++ |++|++++|... .+|..++.++. |+.
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 7777777777777777777 677777777777777766677777777777 777777777665 66666655543 777
Q ss_pred ecceeecCCcchhH---hhc--cccCCCeEEEEcccchhHHHHHHh-hcCCCCCcEEEeeeccccccccCCccCC-----
Q 038220 664 LLGICICETSCVEQ---GLD--KLLNLRELGLHGDLILHEEALCKW-IYNLKGLQCLKMQSRITYTVDLSDVQNF----- 732 (866)
Q Consensus 664 L~~~~~~~~~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~~~~l~~~~~~----- 732 (866)
|++.++.....++. .+. .+++|+.|++++|... .++.. +..+++|+.|++++|.+. .+|.....
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGN 723 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSC
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC--ccChHHhcccccc
Confidence 77776644333322 122 3347888888887653 23333 346789999999988653 55544332
Q ss_pred ---CCCceEEEEEeecCCCCCccccC--CCCCCCeeEEeccccCCCeEEECCCCCccccEEEeec------CCCCcceEE
Q 038220 733 ---PPNLTELSLQFCFLTEDPLKELE--KLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSN------LCYLERWRI 801 (866)
Q Consensus 733 ---~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~ 801 (866)
+++|+.|+|++|.++ ..+..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|+|++ |.....+|.
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 238999999999887 4556665 89999999999998875 677788999999999976 444556677
Q ss_pred ccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 802 EEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 802 ~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.++.+++|+.|+|++|.. +.+|..+. ++|+.|+|++|+.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 778899999999999976 88888765 6999999999984
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.3e-24 Score=234.56 Aligned_cols=291 Identities=17% Similarity=0.141 Sum_probs=184.9
Q ss_pred CCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCcccc-ccccCCCCccEEe
Q 038220 543 SSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLD 618 (866)
Q Consensus 543 ~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~ 618 (866)
+++++.|.+.++ ....+..+..++.|++|++++|.+..++. .+..+++|++|++++|.++.+| ..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 455555655554 22223345556666666666666554442 4566666666666666665553 3355666666666
Q ss_pred cCCCccccccccc-cccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccC-------------
Q 038220 619 LSSTLVDPIPLVI-WKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLN------------- 684 (866)
Q Consensus 619 l~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~------------- 684 (866)
+++|.+..+|..+ ..+++|++|++++|......|..++.+++|++|++.++..... .++.+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 6666555665543 5566666666666655433344455666666666555533221 1333444
Q ss_pred ------CCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCC
Q 038220 685 ------LRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLP 758 (866)
Q Consensus 685 ------L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~ 758 (866)
|+.|++++|..... + ....++|+.|++++|.+.. +.++..+++|+.|+|++|.+....+..++.++
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~---~--~~~~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVV---R--GPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp EECCSSCSEEECCSSCCCEE---E--CCCCSSCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cCCCCcceEEECCCCeeeec---c--ccccccccEEECCCCCCcc---cHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 44555554432111 0 1123567777777765432 23566778999999999988877777888999
Q ss_pred CCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEE
Q 038220 759 NLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKL 838 (866)
Q Consensus 759 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 838 (866)
+|+.|+|++|.+. .++.....+++|++|++++|.. ..++.....+++|+.|++++|+ ++.+| +..+++|+.|++
T Consensus 273 ~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 273 RLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTL 346 (390)
T ss_dssp SCCEEECCSSCCC--EEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEEC
T ss_pred cCCEEECCCCcCc--ccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEc
Confidence 9999999888876 4666667899999999998854 4555556788999999999987 44454 678999999999
Q ss_pred eCCCHHHHHHHh
Q 038220 839 GYMPFDFDLMAQ 850 (866)
Q Consensus 839 ~~~~~~~~~~~~ 850 (866)
++|++.......
T Consensus 347 ~~N~~~~~~~~~ 358 (390)
T 3o6n_A 347 SHNDWDCNSLRA 358 (390)
T ss_dssp CSSCEEHHHHHH
T ss_pred CCCCccchhHHH
Confidence 999976654433
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1e-24 Score=255.07 Aligned_cols=265 Identities=18% Similarity=0.170 Sum_probs=165.6
Q ss_pred CeeEEEEecCCccccCcc--cccCCCCceEEEeeCCCCc-cccccccCCCCccEEecCCCcccccccccccccc-ccEEe
Q 038220 566 KLLQVLDLEGVYMALIDS--SIGNLIHLRYLDLRKTWLK-MLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQ-LKHVY 641 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~-L~~L~ 641 (866)
+.|++|++++|.+..+|. .++++++|++|++++|.++ .+| .++++.+|++|++++|.+..+|..+..+++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 445555555555445554 4555555555555555555 555 555555555555555544455555555555 55555
Q ss_pred ccCccccccCCCCCCCCC--CCceecceeecCCcchhHhhc-------cccCCCeEEEEcccchhHHHHHH-hhcCCCCC
Q 038220 642 FSEFREMVVNPPADASLP--NLQTLLGICICETSCVEQGLD-------KLLNLRELGLHGDLILHEEALCK-WIYNLKGL 711 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~--~L~~L~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~-~l~~~~~L 711 (866)
+++|... .+|..++.++ +|+.|++.++......+..+. .+++|+.|++++|... .++. .+..+++|
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L 459 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPL 459 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCC
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC---cCCHHHHccCCCC
Confidence 5555544 5555444433 566666555544444443344 5556777777776543 1222 23456778
Q ss_pred cEEEeeeccccccccCCccCC-C-------CCceEEEEEeecCCCCCccccC--CCCCCCeeEEeccccCCCeEEECCCC
Q 038220 712 QCLKMQSRITYTVDLSDVQNF-P-------PNLTELSLQFCFLTEDPLKELE--KLPNLRVLKLKQSSYLGKEMVSSSGG 781 (866)
Q Consensus 712 ~~L~l~~~~~~~~~l~~~~~~-~-------~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~ 781 (866)
+.|++++|.+. .+|..... . ++|+.|+|++|.++ ..+..+. .+++|+.|+|++|.+.+ ++..+..
T Consensus 460 ~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~ 534 (636)
T 4eco_A 460 SSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLN 534 (636)
T ss_dssp SEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGG
T ss_pred CEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhc
Confidence 88888877643 44433222 1 27888888888877 4445555 88888888888888774 6667778
Q ss_pred CccccEEEeec------CCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 782 FSQLQFLKLSN------LCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 782 ~~~L~~L~l~~------~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+++|+.|+|++ |.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+.
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 88888888854 444556666777888899999988875 77887655 7899999998863
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.4e-24 Score=257.64 Aligned_cols=294 Identities=12% Similarity=0.110 Sum_probs=238.1
Q ss_pred CCCCceEEEecCC--CCCccccccCCCeeEEEEecCCc-cc--cCcccccCCC-------CceEEEeeCCCCccccc--c
Q 038220 542 KSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVY-MA--LIDSSIGNLI-------HLRYLDLRKTWLKMLPS--S 607 (866)
Q Consensus 542 ~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~-~~--~lp~~i~~l~-------~L~~L~l~~~~i~~lp~--~ 607 (866)
.+++|+.|.+.++ ...+|..+.+++.|+.|++++|. +. .+|..++++. +|++|+|++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 7889999999887 46677889999999999999997 75 4887777666 99999999999999998 8
Q ss_pred ccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCC-CceecceeecCCcchhHhhcccc--C
Q 038220 608 MGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPN-LQTLLGICICETSCVEQGLDKLL--N 684 (866)
Q Consensus 608 i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~~~~~~~~~~~~~~l~~l~--~ 684 (866)
++++.+|++|++++|.+..+| .+..+++|++|++++|... .+|..+..+++ |+.|++.++... .+|..+..++ +
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 999999999999999888999 8999999999999999887 89989999999 999999988554 5565466554 4
Q ss_pred CCeEEEEcccchhH-HHHHHhhc--CCCCCcEEEeeeccccccccCCcc-CCCCCceEEEEEeecCCCCCccccC-----
Q 038220 685 LRELGLHGDLILHE-EALCKWIY--NLKGLQCLKMQSRITYTVDLSDVQ-NFPPNLTELSLQFCFLTEDPLKELE----- 755 (866)
Q Consensus 685 L~~L~l~~~~~~~~-~~l~~~l~--~~~~L~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~----- 755 (866)
|+.|++++|..... ..++..+. .+++|+.|++++|.+. .+|..+ ..+++|+.|+|++|.+...+...+.
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 99999999875321 11111122 3458999999998754 566544 3678999999999988743322222
Q ss_pred --CCCCCCeeEEeccccCCCeEEECCC--CCccccEEEeecCCCCcceEEccCcccccceeeEee------cccCCccCC
Q 038220 756 --KLPNLRVLKLKQSSYLGKEMVSSSG--GFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIE------CMRLKIVPS 825 (866)
Q Consensus 756 --~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~------c~~l~~lp~ 825 (866)
+|++|+.|+|++|.+. .++..+. .+++|+.|+|++|.... +|...+.+++|+.|+|++ |.....+|.
T Consensus 724 l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 3459999999999887 5666665 89999999999987544 777888999999999987 555667899
Q ss_pred CccCCCCCCEEEEeCCCH
Q 038220 826 GLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 826 ~l~~l~~L~~L~l~~~~~ 843 (866)
.+.++++|+.|+|++|++
T Consensus 801 ~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 999999999999999984
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.2e-24 Score=254.62 Aligned_cols=297 Identities=12% Similarity=0.116 Sum_probs=246.4
Q ss_pred CcCCC--CCCCceEEEecCC--CCCccccccCCCeeEEEEecCCc-cc--cCcccccCC------CCceEEEeeCCCCcc
Q 038220 537 PSQTR--KSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVY-MA--LIDSSIGNL------IHLRYLDLRKTWLKM 603 (866)
Q Consensus 537 ~~~~~--~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~i~~ 603 (866)
+..+. .+++|+.|.+.++ ....|..+.+++.|++|++++|. +. .+|..++++ ++|++|++++|.++.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 45566 7999999999987 46678889999999999999998 76 589888887 999999999999999
Q ss_pred ccc--cccCCCCccEEecCCCccc-cccccccccccccEEeccCccccccCCCCCCCCCC-CceecceeecCCcchhHhh
Q 038220 604 LPS--SMGNLFNLQSLDLSSTLVD-PIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPN-LQTLLGICICETSCVEQGL 679 (866)
Q Consensus 604 lp~--~i~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~~~~~~~~~~~~~~l 679 (866)
+|. .++++.+|++|++++|.+. .+| .+..+++|++|++++|... .+|..++.+++ |++|++.++... .++..+
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 999 9999999999999999887 999 8999999999999999887 89999999999 999999988555 566556
Q ss_pred cccc--CCCeEEEEcccchhHHHHHHhhc-------CCCCCcEEEeeeccccccccCCc-cCCCCCceEEEEEeecCCCC
Q 038220 680 DKLL--NLRELGLHGDLILHEEALCKWIY-------NLKGLQCLKMQSRITYTVDLSDV-QNFPPNLTELSLQFCFLTED 749 (866)
Q Consensus 680 ~~l~--~L~~L~l~~~~~~~~~~l~~~l~-------~~~~L~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~ 749 (866)
..+. +|+.|++++|.... ..+..+. .+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.++..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTT--TTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhcccCccCEEECcCCcCCC--cchhhhcccccccccCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCCCc
Confidence 6544 89999999987632 2234455 6679999999998754 45543 44578999999999998743
Q ss_pred CccccC-------CCCCCCeeEEeccccCCCeEEECCC--CCccccEEEeecCCCCcceEEccCcccccceeeEe-----
Q 038220 750 PLKELE-------KLPNLRVLKLKQSSYLGKEMVSSSG--GFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEII----- 815 (866)
Q Consensus 750 ~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~----- 815 (866)
+...+. ++++|+.|+|++|.+. .++..+. .+++|+.|+|++|.... +|...+.+++|+.|+++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 332333 2349999999999887 5666665 89999999999987655 78888899999999995
Q ss_pred -ecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 816 -ECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 816 -~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+|.....+|..+..+++|+.|++++|.+
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 4556678899999999999999999984
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=8.3e-24 Score=229.21 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=234.0
Q ss_pred CCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEe
Q 038220 540 TRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLD 618 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 618 (866)
...++++++|.+.++. ..+ ..+..+++|++|++++|.+..++. +.++++|++|++++|.++.+| .+.++++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 3467899999999873 223 347889999999999999988887 999999999999999999886 689999999999
Q ss_pred cCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhH
Q 038220 619 LSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHE 698 (866)
Q Consensus 619 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 698 (866)
+++|.+..+|. +..+++|++|++++|.... .+..+..+++|++|++.++... .++. +..+++|+.|++++|.....
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccc
Confidence 99999988886 8999999999999997663 3445899999999999888443 3344 88899999999999876432
Q ss_pred HHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEEC
Q 038220 699 EALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSS 778 (866)
Q Consensus 699 ~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 778 (866)
. .+..+++|+.|++++|.+.. .+. +..+++|++|++++|.+..... +..+++|+.|++++|.+.+. ..
T Consensus 193 ~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~ 260 (347)
T 4fmz_A 193 S----PLASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---NA 260 (347)
T ss_dssp G----GGGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GG
T ss_pred c----cccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---hh
Confidence 2 27788999999999876432 222 5667899999999999875443 88999999999999987752 35
Q ss_pred CCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 779 SGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 779 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+..+++|++|++++|... .+ .....+++|+.|++++|......|..+..+++|+.|++++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred HhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 788999999999998653 33 3467899999999999987666677788999999999999984
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=248.20 Aligned_cols=116 Identities=19% Similarity=0.124 Sum_probs=95.0
Q ss_pred CccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCccc
Q 038220 728 DVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMC 807 (866)
Q Consensus 728 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p 807 (866)
..+..+++|++|++++|.+....+..++.+++|+.|+|++|.+.+..++..+..+++|+.|++++|......+..++.++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 34566788999999998887777777888999999999888876446777888999999999999876554455678899
Q ss_pred ccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 808 NLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 808 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+|+.|++++|......|..+..+++|+.|++++|++
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 999999999965554455688999999999999874
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=8.9e-24 Score=225.89 Aligned_cols=233 Identities=21% Similarity=0.224 Sum_probs=192.2
Q ss_pred CCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccC
Q 038220 565 YKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSE 644 (866)
Q Consensus 565 ~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 644 (866)
...++.|+++++.+..+|..++++++|++|+|++|.++.+|..++++.+|++|++++|.+..+|..+.++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred ccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccccc
Q 038220 645 FREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTV 724 (866)
Q Consensus 645 ~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 724 (866)
|...+.+|..++.. ... ..++.+++|+.|++++|. + .
T Consensus 160 n~~~~~~p~~~~~~------~~~---------~~~~~l~~L~~L~L~~n~--------------------------l--~ 196 (328)
T 4fcg_A 160 CPELTELPEPLAST------DAS---------GEHQGLVNLQSLRLEWTG--------------------------I--R 196 (328)
T ss_dssp ETTCCCCCSCSEEE------C-C---------CCEEESTTCCEEEEEEEC--------------------------C--C
T ss_pred CCCccccChhHhhc------cch---------hhhccCCCCCEEECcCCC--------------------------c--C
Confidence 87776777654321 111 114445555555555443 2 2
Q ss_pred ccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccC
Q 038220 725 DLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEG 804 (866)
Q Consensus 725 ~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 804 (866)
.+|..+..+++|++|+|++|.+.. .+..++.+++|+.|+|++|.+.+ .++..++++++|++|++++|.....++..++
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 456666777888888888888764 44568889999999998888776 6677788999999999999998888888888
Q ss_pred cccccceeeEeecccCCccCCCccCCCCCCEEEEeCCC
Q 038220 805 AMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 805 ~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
.+++|+.|+|++|+.++.+|..+.++++|+.+.+..+.
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999988654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-23 Score=245.04 Aligned_cols=293 Identities=17% Similarity=0.142 Sum_probs=198.9
Q ss_pred CCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccccc-cccCCCCccEE
Q 038220 542 KSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSL 617 (866)
Q Consensus 542 ~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L 617 (866)
.+++++.+.+.++ ....+..|..++.|++|+|++|.+..++ ..++.+++|++|+|++|.++.+|+ .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3556677766665 3333445666777777777777766554 367777777777777777776654 35677777777
Q ss_pred ecCCCccccccccc-cccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccch
Q 038220 618 DLSSTLVDPIPLVI-WKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLIL 696 (866)
Q Consensus 618 ~l~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 696 (866)
+|++|.+..+|..+ ..+++|++|++++|......|..++.+++|++|++.++..... + ++.+++|+.|++++|...
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccc
Confidence 77777777776653 6777777777777766644455567777777777766643322 1 344555555555554321
Q ss_pred hHH----------------HHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCC
Q 038220 697 HEE----------------ALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNL 760 (866)
Q Consensus 697 ~~~----------------~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 760 (866)
... .++ ....++|+.|++++|.+.. +.++..+++|+.|+|++|.+....+..++.+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEE--CSCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCcccccc--cccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 100 000 0112456666666654322 3456678899999999998887777788899999
Q ss_pred CeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeC
Q 038220 761 RVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGY 840 (866)
Q Consensus 761 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 840 (866)
+.|+|++|.+. .++.....+|+|+.|+|++|... .++...+.+++|+.|++++|.. ..+| +..+++|+.|++++
T Consensus 281 ~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 281 ERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CEEECTTSCCC--EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCS
T ss_pred CEEECCCCCCC--CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeC
Confidence 99999888876 46666778999999999988654 5666667889999999999874 4444 67889999999999
Q ss_pred CCHHHHHH
Q 038220 841 MPFDFDLM 848 (866)
Q Consensus 841 ~~~~~~~~ 848 (866)
|++.....
T Consensus 355 N~~~~~~~ 362 (597)
T 3oja_B 355 NDWDCNSL 362 (597)
T ss_dssp SCEEHHHH
T ss_pred CCCCChhH
Confidence 99765443
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=9.4e-24 Score=247.21 Aligned_cols=275 Identities=20% Similarity=0.147 Sum_probs=172.0
Q ss_pred eeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccc-cccccccccccEEeccC
Q 038220 567 LLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSE 644 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 644 (866)
.|+.|+++++.+..++.. +.++++|++|++++|.++.+|..++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 566777777776655543 7788888888888888888888888888888888888877666 45678888888888888
Q ss_pred ccccccCCCC-CCCCCCCceecceeecCCcch--hHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 645 FREMVVNPPA-DASLPNLQTLLGICICETSCV--EQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 645 ~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
|.....+|.. ++.+++|+.|++.++...... +..++.+++|+.|++++|..... .+..+..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE--CTTTTTTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC--CHHHhcCCccCCeEECCCCcC
Confidence 8765455544 777888888887776444332 33477778888888877754211 233456667777777777654
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEE--ECCCCCccccEEEeecCCCCcce
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMV--SSSGGFSQLQFLKLSNLCYLERW 799 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~ 799 (866)
.....+.++..+++|+.|++++|.+....+..++.+++|+.|+|++|.+.+..++ ..+..+++|+.|++++|......
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 3333334455566666666666666555555566666666666665555432221 12344555555555554332222
Q ss_pred EEccCcccccceeeE-----------------------eecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 800 RIEEGAMCNLRRLEI-----------------------IECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 800 ~~~~~~~p~L~~L~l-----------------------~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+..++.+++|+.|++ ++|......|..+..+++|+.|++++||+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 233344444444444 44443333334455667777777777764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=245.28 Aligned_cols=313 Identities=19% Similarity=0.163 Sum_probs=188.6
Q ss_pred CCceEEEEecCCC-----cCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEee
Q 038220 525 AKARRLAIHFGIP-----SQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLR 597 (866)
Q Consensus 525 ~~~r~l~i~~~~~-----~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 597 (866)
.+++++.+..... ..+..+++|++|.+.++ ....+..|..++.|++|++++|.+..+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 5677777766652 23567788888888877 344466778888888888888888777766 78888888888
Q ss_pred CCCCcc--ccccccCCCCccEEecCCCccccccccccccccc--cEEeccCccc--cccCCCCCCC--------------
Q 038220 598 KTWLKM--LPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQL--KHVYFSEFRE--MVVNPPADAS-------------- 657 (866)
Q Consensus 598 ~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~-------------- 657 (866)
+|.++. +|..++++.+|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 888875 56788888888888888876554 245556666 7777766654 3333333333
Q ss_pred ------------CCCCceecceeec-------------------------------------------------------
Q 038220 658 ------------LPNLQTLLGICIC------------------------------------------------------- 670 (866)
Q Consensus 658 ------------l~~L~~L~~~~~~------------------------------------------------------- 670 (866)
+++|+.|++..+.
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 3334444333321
Q ss_pred --CCcchhHhh-----ccccCCCeEEEEcccchhH-HHHHHh---------------------hcCCCCCcEEEeeeccc
Q 038220 671 --ETSCVEQGL-----DKLLNLRELGLHGDLILHE-EALCKW---------------------IYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 671 --~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~-~~l~~~---------------------l~~~~~L~~L~l~~~~~ 721 (866)
..+.++..+ +++++|+.+++.++..... ..+... ...+++|+.|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 111111111 2222222222222221000 111111 14566777777777654
Q ss_pred cccccCCccCCCCCceEEEEEeecCCC--CCccccCCCCCCCeeEEeccccCCCeEEE-CCCCC----------------
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTE--DPLKELEKLPNLRVLKLKQSSYLGKEMVS-SSGGF---------------- 782 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~---------------- 782 (866)
. ...|..+..+++|++|+|++|.+.. ..+..++.+++|+.|+|++|.+.+ .++. .+..+
T Consensus 337 ~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 337 T-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp C-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred C-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-ccccchhccCccCCEEECcCCCCCcc
Confidence 2 2345555666677777777776654 223345666666666666665543 1111 12222
Q ss_pred ------ccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCC-ccCCCCCCEEEEeCCCHHH
Q 038220 783 ------SQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSG-LWPLTTLSNLKLGYMPFDF 845 (866)
Q Consensus 783 ------~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~~~ 845 (866)
++|+.|++++|.. ..++.....+++|+.|++++|. ++.+|.. +..+++|+.|++++|++..
T Consensus 415 ~~~~l~~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 415 IFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGSCCTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhhcccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCCcc
Confidence 4666666666543 3556556688999999999985 5578876 8889999999999988543
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3e-24 Score=251.48 Aligned_cols=291 Identities=16% Similarity=0.122 Sum_probs=228.9
Q ss_pred CceEEEEecCC-----CcCCCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeC
Q 038220 526 KARRLAIHFGI-----PSQTRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRK 598 (866)
Q Consensus 526 ~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 598 (866)
.++.+.+.... ...+..+++|+.|.+.++ -..++..+..++.|++|++++|.+..+ |..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 45556555544 223567889999999887 345666788889999999999988765 56788999999999999
Q ss_pred CCCc-cccc-cccCCCCccEEecCCCccccc---cccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCc
Q 038220 599 TWLK-MLPS-SMGNLFNLQSLDLSSTLVDPI---PLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETS 673 (866)
Q Consensus 599 ~~i~-~lp~-~i~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~ 673 (866)
|.+. .+|. .++++++|++|++++|.+..+ |..+..+++|++|++++|......|..++.+++|+.|++.++....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 9876 6665 488899999999999977665 5678899999999999998776667788999999999988875443
Q ss_pred chh-HhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccccccc--CCccCCCCCceEEEEEeecCCCCC
Q 038220 674 CVE-QGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDL--SDVQNFPPNLTELSLQFCFLTEDP 750 (866)
Q Consensus 674 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~l~~~~ 750 (866)
..+ ..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+....+ +..+..+++|+.|+|++|.++...
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDI--SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBT--TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred cccchhhhCcccCCEEECCCCccCC--cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 332 337788999999999887532 224557788999999999987654333 345677899999999999998877
Q ss_pred ccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccC
Q 038220 751 LKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRL 820 (866)
Q Consensus 751 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l 820 (866)
+..++.+++|+.|+|++|.+.+ ..+..+..+++| .|++++|......+...+.+++|+.|++++|+..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCG-GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred hhhhccccCCCEEECCCCccCc-CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 7889999999999999998875 445667889999 9999998765544444578999999999999854
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=7.7e-24 Score=247.95 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=112.3
Q ss_pred CCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCccc-cccccCCCCccEEe
Q 038220 543 SSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLD 618 (866)
Q Consensus 543 ~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~ 618 (866)
.++++.|.+.++ ....+..|.+++.|++|++++|.+..+ |..++++++|++|++++|.++.+ |..++++.+|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 378999999988 445556899999999999999999866 56789999999999999999987 78899999999999
Q ss_pred cCCCcccccc-ccccccccccEEeccCccccc-cCCCCCCCCCCCceecceeec
Q 038220 619 LSSTLVDPIP-LVIWKMQQLKHVYFSEFREMV-VNPPADASLPNLQTLLGICIC 670 (866)
Q Consensus 619 l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~~~~~~ 670 (866)
+++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++.++.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 9999888877 679999999999999998764 468889999999999887764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.5e-23 Score=242.63 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=84.2
Q ss_pred cCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCC--ccccCCCCCCCeeEEeccccCCCeEEE-CC---
Q 038220 706 YNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDP--LKELEKLPNLRVLKLKQSSYLGKEMVS-SS--- 779 (866)
Q Consensus 706 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~--- 779 (866)
..+++|+.|++++|.+. ...|..+..+++|+.|+|++|.+.... +..++.+++|+.|+|++|.+.+ .++. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS-HAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCC-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS-CCSSCCCCCC
T ss_pred cCCCCceEEECCCCccc-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC-ccChhhhcCc
Confidence 34566666666665432 234444555566666666666554321 2335555555666655555432 1111 11
Q ss_pred ------------------CCC-ccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCC-ccCCCCCCEEEEe
Q 038220 780 ------------------GGF-SQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSG-LWPLTTLSNLKLG 839 (866)
Q Consensus 780 ------------------~~~-~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~ 839 (866)
..+ ++|+.|++++|. +..+|.....+++|+.|++++|. ++.+|.. +..+++|+.|+++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEec
Confidence 123 577777777764 44566666688999999999886 5578877 8899999999999
Q ss_pred CCCHHH
Q 038220 840 YMPFDF 845 (866)
Q Consensus 840 ~~~~~~ 845 (866)
+||+..
T Consensus 506 ~N~~~c 511 (562)
T 3a79_B 506 DNPWDC 511 (562)
T ss_dssp SCCBCC
T ss_pred CCCcCC
Confidence 988643
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=230.17 Aligned_cols=274 Identities=18% Similarity=0.126 Sum_probs=226.2
Q ss_pred CeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
+.+++|+|++|.+..+ |..+.++++|++|+|++|.++.+ |..++++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5789999999999866 46799999999999999999977 77899999999999999999999865 689999999999
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITY 722 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 722 (866)
++|......|..+..+++|++|++.++......+..+..+++|+.|++++|..... ....+..+++|+.|++.+|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC--CHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc--ChhHhcccCCCcEEeCCCCcCc
Confidence 99988866778899999999999998865555555588999999999999875322 1345788999999999997653
Q ss_pred ccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEc
Q 038220 723 TVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIE 802 (866)
Q Consensus 723 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 802 (866)
...+..+..+++|+.|++++|......+.......+|+.|+|++|.+.. .....+..+++|+.|+|++|......+..
T Consensus 190 -~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 190 -AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp -EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred -EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCccChhh
Confidence 2334456778999999999998766666666666799999999998774 22234678999999999998754322334
Q ss_pred cCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 803 EGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 803 ~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+..+++|+.|++++|......|..+..+++|+.|++++|.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 67899999999999976666678899999999999999974
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.6e-23 Score=234.43 Aligned_cols=296 Identities=17% Similarity=0.069 Sum_probs=224.5
Q ss_pred CCCceEEEEecCC------CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCcccc-Cccc--ccCCCCce
Q 038220 524 LAKARRLAIHFGI------PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMAL-IDSS--IGNLIHLR 592 (866)
Q Consensus 524 ~~~~r~l~i~~~~------~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~--i~~l~~L~ 592 (866)
..+++.+.+.... ...+..+++|++|.+.++ ....+..|.+++.|++|++++|.+.. .|.. +.++++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 4567888887664 234678899999999988 44557789999999999999999864 4444 88999999
Q ss_pred EEEeeCCCCccc-ccc-ccCCCCccEEecCCCccccc-ccccccc--ccccEEeccCccccccCCC--------CCCCCC
Q 038220 593 YLDLRKTWLKML-PSS-MGNLFNLQSLDLSSTLVDPI-PLVIWKM--QQLKHVYFSEFREMVVNPP--------ADASLP 659 (866)
Q Consensus 593 ~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~~~~~~l-p~~i~~l--~~L~~L~l~~~~~~~~~p~--------~~~~l~ 659 (866)
+|++++|.+..+ |.. ++++++|++|++++|.+..+ |..+..+ .+|++|+++++......+. .+..++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999999999977 554 88999999999999976655 4455555 6788888888766522221 133567
Q ss_pred CCceecceeecCCcchhHhhcc---------------------------------------ccCCCeEEEEcccchhHHH
Q 038220 660 NLQTLLGICICETSCVEQGLDK---------------------------------------LLNLRELGLHGDLILHEEA 700 (866)
Q Consensus 660 ~L~~L~~~~~~~~~~~~~~l~~---------------------------------------l~~L~~L~l~~~~~~~~~~ 700 (866)
+|++|++.++......+..+.. .++|+.|++++|.... .
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~ 290 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA--L 290 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE--E
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc--c
Confidence 7888887776544333322221 2578888888876532 2
Q ss_pred HHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCC
Q 038220 701 LCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSG 780 (866)
Q Consensus 701 l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 780 (866)
.+..+..+++|+.|++++|.+. ...|..+..+++|++|+|++|.+....+..++.+++|+.|+|++|.+.+ ..+..+.
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 368 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFL 368 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTTTTT
T ss_pred chhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChhhcc
Confidence 3456788999999999998753 3446677788999999999999987777889999999999999998864 3355688
Q ss_pred CCccccEEEeecCCCCcceEE-ccCcccccceeeEeecccCCccC
Q 038220 781 GFSQLQFLKLSNLCYLERWRI-EEGAMCNLRRLEIIECMRLKIVP 824 (866)
Q Consensus 781 ~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~l~~c~~l~~lp 824 (866)
++++|++|++++|... .++. .+..+++|+.|++++|+.....|
T Consensus 369 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999998654 4443 35789999999999998765554
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.4e-23 Score=236.63 Aligned_cols=318 Identities=18% Similarity=0.177 Sum_probs=217.1
Q ss_pred CCCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCccc-ccCCCCceEEE
Q 038220 524 LAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLD 595 (866)
Q Consensus 524 ~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~ 595 (866)
...++++.+.... +..+..+++|++|.+.++ ....+..|..++.|++|++++|.+..+|.. ++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 3567777777665 345678889999999887 344556788899999999999988877654 88999999999
Q ss_pred eeCCCCcc--ccccccCCCCccEEecCCCc-ccccc-ccccccccccEEeccCccccccCCCCCCCCCCCceecceeecC
Q 038220 596 LRKTWLKM--LPSSMGNLFNLQSLDLSSTL-VDPIP-LVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICE 671 (866)
Q Consensus 596 l~~~~i~~--lp~~i~~l~~L~~L~l~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~ 671 (866)
+++|.++. .|..++++.+|++|++++|. +..+| ..+..+++|++|++++|......|..++.+++|++|++..+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999884 46788899999999999885 77776 4688899999999998888767788888888888888776643
Q ss_pred CcchhHhhccccCCCeEEEEcccchh-----------------------------HHHHHHhhcCCCCCcEEEeeecccc
Q 038220 672 TSCVEQGLDKLLNLRELGLHGDLILH-----------------------------EEALCKWIYNLKGLQCLKMQSRITY 722 (866)
Q Consensus 672 ~~~~~~~l~~l~~L~~L~l~~~~~~~-----------------------------~~~l~~~l~~~~~L~~L~l~~~~~~ 722 (866)
.......+..+++|+.|++++|.... ...+...+..+++|+.|++.+|...
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 32222223456677777776654321 1223344455566666666654321
Q ss_pred cc-cc------------------------CC---------ccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEecc
Q 038220 723 TV-DL------------------------SD---------VQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQS 768 (866)
Q Consensus 723 ~~-~l------------------------~~---------~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 768 (866)
.. .+ |. .....++|+.|++++|.+...+...++.+++|+.|+|++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 10 00 00 0111345667777777664332222356888888888888
Q ss_pred ccCCCeE--EECCCCCccccEEEeecCCCCcceE---EccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 769 SYLGKEM--VSSSGGFSQLQFLKLSNLCYLERWR---IEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 769 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.+.+... ...++.+++|+.|++++|.... ++ ...+.+++|+.|++++|. ++.+|..+..+++|+.|++++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCc
Confidence 7764111 1235678888888888876432 22 235678888888888884 557787777788888888887763
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.2e-23 Score=223.54 Aligned_cols=247 Identities=19% Similarity=0.160 Sum_probs=129.7
Q ss_pred CeeEEEEecCCccc---cCcccccCCCCceEEEeeC-CCCc-cccccccCCCCccEEecCCCccc-cccccccccccccE
Q 038220 566 KLLQVLDLEGVYMA---LIDSSIGNLIHLRYLDLRK-TWLK-MLPSSMGNLFNLQSLDLSSTLVD-PIPLVIWKMQQLKH 639 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 639 (866)
..++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45677777777664 4677777777777777773 6655 56777777777777777777555 66666777777777
Q ss_pred EeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhcccc-CCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeee
Q 038220 640 VYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLL-NLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQS 718 (866)
Q Consensus 640 L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 718 (866)
|++++|......|..++.+++|++|++.++.....++..+..++ +|+.|++++|.... .++..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE--ECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec--cCChHHhCCc-ccEEECcC
Confidence 77777766655666666666666666666544334444455555 56666655554310 1112222222 44444444
Q ss_pred ccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcc
Q 038220 719 RITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLER 798 (866)
Q Consensus 719 ~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 798 (866)
|.+. ...|..+..+++|+.|+|++|.+....+ .+..+++|++|+|++|.+.+ .++..+..+++|++|++++|+....
T Consensus 207 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 207 NMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp SEEE-ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred Cccc-CcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCccccc
Confidence 3321 1233333344444444444444432222 23444444444444444432 2333334444444444444433222
Q ss_pred eEEccCcccccceeeEeeccc
Q 038220 799 WRIEEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 799 ~~~~~~~~p~L~~L~l~~c~~ 819 (866)
+|.. +.+++|+.|++.+|+.
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSE
T ss_pred CCCC-ccccccChHHhcCCCC
Confidence 2222 3444444444444443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=4e-22 Score=222.82 Aligned_cols=293 Identities=17% Similarity=0.093 Sum_probs=221.1
Q ss_pred CCCceEEEEecCC---CcCCCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCC
Q 038220 524 LAKARRLAIHFGI---PSQTRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKT 599 (866)
Q Consensus 524 ~~~~r~l~i~~~~---~~~~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 599 (866)
...++.+.+.... .+.+..+++|+.|.+.++. ...+ +..++.|++|++++|.+..+| ++++++|++|++++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 3556666666554 3345678899999998872 2222 778889999999999988775 888999999999999
Q ss_pred CCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhh
Q 038220 600 WLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGL 679 (866)
Q Consensus 600 ~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l 679 (866)
.++.+| ++++++|++|++++|.+..++ +..+++|++|++++|...+.+ .++.+++|+.|++.++.... ++ +
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l 187 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--V 187 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--c
Confidence 998886 888999999999999888775 788999999999998665454 47788999999988874443 33 7
Q ss_pred ccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCC-
Q 038220 680 DKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLP- 758 (866)
Q Consensus 680 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~- 758 (866)
+.+++|+.|++++|..... .+..+++|+.|++++|.+.. +| +..+++|+.|++++|.+++.++..+.++.
T Consensus 188 ~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~ 258 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTT 258 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred ccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCE
Confidence 7889999999998876443 37788999999999987543 55 56778999999999988775543343333
Q ss_pred ------CCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEc--------cCcccccceeeEeecccCCccC
Q 038220 759 ------NLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIE--------EGAMCNLRRLEIIECMRLKIVP 824 (866)
Q Consensus 759 ------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~~p~L~~L~l~~c~~l~~lp 824 (866)
+|+.|++++|.+.+ .++ .+++++|+.|++++|..+..++.. ...+|+|+.|++++|. ++.++
T Consensus 259 L~l~~n~L~~L~l~~n~~~~-~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~ 334 (457)
T 3bz5_A 259 LHCIQTDLLEIDLTHNTQLI-YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD 334 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCC-EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC
T ss_pred EeccCCCCCEEECCCCccCC-ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc
Confidence 44555555555444 444 568899999999999887776642 3456778888888775 44453
Q ss_pred CCccCCCCCCEEEEeCCCHH
Q 038220 825 SGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 825 ~~l~~l~~L~~L~l~~~~~~ 844 (866)
+..|++|+.|++++|.+.
T Consensus 335 --l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp --CTTCTTCSEEECCSSCCC
T ss_pred --cccCCcCcEEECCCCCCC
Confidence 788999999999998843
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.8e-22 Score=226.14 Aligned_cols=295 Identities=21% Similarity=0.195 Sum_probs=173.0
Q ss_pred CCceEEEEecCC---CcCCCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCC
Q 038220 525 AKARRLAIHFGI---PSQTRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTW 600 (866)
Q Consensus 525 ~~~r~l~i~~~~---~~~~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 600 (866)
..++.+.+.... .+.+..+++|+.|.+.++. ...+. +.++++|++|++++|.+..++. +.++++|++|++++|.
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc
Confidence 445555555443 1224556666666666551 11222 5666666666666666655554 5666666666666665
Q ss_pred Cccccc--------------------cccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCC
Q 038220 601 LKMLPS--------------------SMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPN 660 (866)
Q Consensus 601 i~~lp~--------------------~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 660 (866)
+..+|. .+.++++|++|++++|.+..++ .+..+++|++|++++|......| ++.+++
T Consensus 146 l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 222 (466)
T 1o6v_A 146 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTN 222 (466)
T ss_dssp ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCC
Confidence 554432 1344555555555555544443 35555666666666555442222 445566
Q ss_pred CceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEE
Q 038220 661 LQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELS 740 (866)
Q Consensus 661 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 740 (866)
|++|++.++... .++. +..+++|+.|++++|...... .+..+++|+.|++++|.+. ..+. +..+++|+.|+
T Consensus 223 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 223 LDELSLNGNQLK-DIGT-LASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQIS--NISP-LAGLTALTNLE 293 (466)
T ss_dssp CCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEE
T ss_pred CCEEECCCCCcc-cchh-hhcCCCCCEEECCCCccccch----hhhcCCCCCEEECCCCccC--cccc-ccCCCccCeEE
Confidence 666666555322 2233 556666666666666543221 1556667777777665432 2222 44567777777
Q ss_pred EEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccC
Q 038220 741 LQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRL 820 (866)
Q Consensus 741 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l 820 (866)
+++|.+.... .++.+++|+.|+|++|.+.+.. .+..+++|+.|++++|.... + .....+++|+.|++++|...
T Consensus 294 L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 294 LNENQLEDIS--PISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC
T ss_pred cCCCcccCch--hhcCCCCCCEEECcCCcCCCch---hhccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCCccC
Confidence 7777765432 3677778888888777766521 15677888888888775433 3 34567888888888888654
Q ss_pred CccCCCccCCCCCCEEEEeCCC
Q 038220 821 KIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 821 ~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
...| +..+++|+.|++++|+
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEE
T ss_pred ccch--hhcCCCCCEEeccCCc
Confidence 4444 7788888888888876
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=247.38 Aligned_cols=312 Identities=18% Similarity=0.141 Sum_probs=173.5
Q ss_pred CCCceEEEEecCC-----CcCCCCCCCceEEEecCCC---CCccccccCCCeeEEEEecCCccccC-cccccCCCCceEE
Q 038220 524 LAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDIS---EPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYL 594 (866)
Q Consensus 524 ~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~~---~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L 594 (866)
+.+++++.+..+. +..+..+++|++|.+.++. ...+..|.++++|++|+|++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 3455666665544 2334556666666666551 12244566666666666666666533 5566666666666
Q ss_pred EeeCCCCcc-cccc--ccCCCCccEEecCCCcccccc--ccccccccccEEeccCccccccCCCCCCCC--CCCceecce
Q 038220 595 DLRKTWLKM-LPSS--MGNLFNLQSLDLSSTLVDPIP--LVIWKMQQLKHVYFSEFREMVVNPPADASL--PNLQTLLGI 667 (866)
Q Consensus 595 ~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~~~ 667 (866)
+|++|.++. +|.. ++++++|++|++++|.+..++ ..+.++++|++|++++|......|..++.+ ++|+.|++.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 666666653 3433 666666666666666554442 346666666666666665544444445444 566666665
Q ss_pred eecCCcchhHhhccccC------CCeEEEEcccchh--HHHHHHh--------------------------------hcC
Q 038220 668 CICETSCVEQGLDKLLN------LRELGLHGDLILH--EEALCKW--------------------------------IYN 707 (866)
Q Consensus 668 ~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~--~~~l~~~--------------------------------l~~ 707 (866)
.+......+..++.+.+ |+.|++++|.... ...+... +..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 55443333322333333 6677776663210 0000000 111
Q ss_pred --CCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccc
Q 038220 708 --LKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQL 785 (866)
Q Consensus 708 --~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 785 (866)
.++|+.|++++|.+. ...|..+..+++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+ ..+..+.++++|
T Consensus 263 l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 340 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKV 340 (844)
T ss_dssp TTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTC
T ss_pred cccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCC
Confidence 145666666655432 2234555666777777777777666555566777777777777766653 334456677777
Q ss_pred cEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCC
Q 038220 786 QFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 786 ~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+.|++++|......+..+..+++|+.|++++|. ++.++ .+++|+.|++++|+
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGNK 392 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESCC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCCC
Confidence 777777764422222234567777777777664 33332 25666666666665
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=235.58 Aligned_cols=291 Identities=18% Similarity=0.114 Sum_probs=205.1
Q ss_pred CCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCccccccccCCCCccEEecC
Q 038220 544 SRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLS 620 (866)
Q Consensus 544 ~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 620 (866)
++++.|.+.++ ....+..|..++.|++|++++|.+..+ |..++++++|++|++++|.++.+|.. .+.+|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 79999999988 445556889999999999999999866 67899999999999999999999987 89999999999
Q ss_pred CCcccc--ccccccccccccEEeccCccccccCCCCCCCCCCC--ceecceeecC--CcchhHh----------------
Q 038220 621 STLVDP--IPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNL--QTLLGICICE--TSCVEQG---------------- 678 (866)
Q Consensus 621 ~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~~~~~~~--~~~~~~~---------------- 678 (866)
+|.+.. +|..+..+++|++|++++|.... ..+..+++| +.|++.++.. ....+..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 997775 57899999999999999987653 345667777 8888887644 2221111
Q ss_pred ----------------------------------------hccccCCCeEEEEcccchhH--HHHHHhhcCCCCCcEEEe
Q 038220 679 ----------------------------------------LDKLLNLRELGLHGDLILHE--EALCKWIYNLKGLQCLKM 716 (866)
Q Consensus 679 ----------------------------------------l~~l~~L~~L~l~~~~~~~~--~~l~~~l~~~~~L~~L~l 716 (866)
++.+++|+.|++.++..... ..+...+ .+++|+.|++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l 254 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSI 254 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEe
Confidence 23334444444444432111 1111111 1235666666
Q ss_pred eeccccccccCCcc-----------------------------------------------------CCCCCceEEEEEe
Q 038220 717 QSRITYTVDLSDVQ-----------------------------------------------------NFPPNLTELSLQF 743 (866)
Q Consensus 717 ~~~~~~~~~l~~~~-----------------------------------------------------~~~~~L~~L~L~~ 743 (866)
++|.+.. .+|..+ ..+++|++|++++
T Consensus 255 ~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 255 SNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred ecccccC-ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 5543211 111111 5678999999999
Q ss_pred ecCCCCCccccCCCCCCCeeEEeccccCCC-eEEECCCCCccccEEEeecCCCCcceEEc-cCccc--------------
Q 038220 744 CFLTEDPLKELEKLPNLRVLKLKQSSYLGK-EMVSSSGGFSQLQFLKLSNLCYLERWRIE-EGAMC-------------- 807 (866)
Q Consensus 744 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p-------------- 807 (866)
|.+++..+..++.+++|+.|+|++|.+.+. .++..+..+++|++|++++|.....++.. +..++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 999887788899999999999999988641 23445789999999999998765534322 33344
Q ss_pred --------ccceeeEeecccCCccCCCccCCCCCCEEEEeCCC
Q 038220 808 --------NLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 808 --------~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+|+.|++++|. ++.+|..+..+++|+.|++++|+
T Consensus 414 ~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp GGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred chhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 45555555443 33556666677777777777776
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.6e-22 Score=226.39 Aligned_cols=298 Identities=20% Similarity=0.158 Sum_probs=185.3
Q ss_pred CCceEEEEecCC---CcCCCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCC
Q 038220 525 AKARRLAIHFGI---PSQTRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTW 600 (866)
Q Consensus 525 ~~~r~l~i~~~~---~~~~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 600 (866)
..++.+.+.... .+.+..+++|+.|.+.++. ...+. +.+++.|++|++++|.+..++. ++++++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 456677666544 3445678899999999882 22333 8899999999999999987776 8999999999999999
Q ss_pred CccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhc
Q 038220 601 LKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLD 680 (866)
Q Consensus 601 i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~ 680 (866)
++.+|. +.++++|++|++++|.+..+| .+..+++|++|+++++ .. ..+ .++.+++|+.|++.++.. ..++. +.
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~-~~-~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~ 196 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ-VT-DLK-PLANLTTLERLDISSNKV-SDISV-LA 196 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES-CC-CCG-GGTTCTTCCEEECCSSCC-CCCGG-GG
T ss_pred CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc-cc-Cch-hhccCCCCCEEECcCCcC-CCChh-hc
Confidence 998876 889999999999999777766 3666666666666422 11 121 245555555555555422 12222 44
Q ss_pred cccCCCeEEEEcccchhHHHH------------------HHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEE
Q 038220 681 KLLNLRELGLHGDLILHEEAL------------------CKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQ 742 (866)
Q Consensus 681 ~l~~L~~L~l~~~~~~~~~~l------------------~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~ 742 (866)
.+++|+.|++++|.......+ ...+..+++|+.|++++|.+. ..+. +..+++|+.|+++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLAP-LSGLTKLTELKLG 273 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--CCGG-GTTCTTCSEEECC
T ss_pred cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc--cchh-hhcCCCCCEEECC
Confidence 455555555554432211100 012344455555555554321 1111 3445566666666
Q ss_pred eecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCc
Q 038220 743 FCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKI 822 (866)
Q Consensus 743 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~ 822 (866)
+|.+.... .++.+++|+.|++++|.+.+.. .+..+++|+.|++++|......+ ...+++|+.|++++|. ++.
T Consensus 274 ~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~ 345 (466)
T 1o6v_A 274 ANQISNIS--PLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-VSD 345 (466)
T ss_dssp SSCCCCCG--GGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC-CCC
T ss_pred CCccCccc--cccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc-cCC
Confidence 66654432 2566666677777666655311 14567777777777765433222 4567777777777774 444
Q ss_pred cCCCccCCCCCCEEEEeCCCH
Q 038220 823 VPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 823 lp~~l~~l~~L~~L~l~~~~~ 843 (866)
++ .+..+++|+.|++++|+.
T Consensus 346 ~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 346 VS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CG-GGTTCTTCCEEECCSSCC
T ss_pred ch-hhccCCCCCEEeCCCCcc
Confidence 43 467788888888888763
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=243.37 Aligned_cols=299 Identities=19% Similarity=0.126 Sum_probs=209.1
Q ss_pred CCCCceEEEecCC--CCCccccccCCCeeEEEEecCCc-cccC-cccccCCCCceEEEeeCCCCccc-cccccCCCCccE
Q 038220 542 KSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVY-MALI-DSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQS 616 (866)
Q Consensus 542 ~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~-~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~ 616 (866)
..++++.|.+.++ ....+..|.+++.|++|+|++|. ...+ |..+.++++|++|+|++|.+..+ |..++++.+|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578888888877 34456678888888888888884 3455 66788888888888888888766 778888888888
Q ss_pred EecCCCcccc-cccc--ccccccccEEeccCccccccCC-CCCCCCCCCceecceeecCCcchhHhhccc--cCCCeEEE
Q 038220 617 LDLSSTLVDP-IPLV--IWKMQQLKHVYFSEFREMVVNP-PADASLPNLQTLLGICICETSCVEQGLDKL--LNLRELGL 690 (866)
Q Consensus 617 L~l~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l--~~L~~L~l 690 (866)
|++++|.+.. +|.. +.++++|++|++++|......+ ..++++++|++|++.++......+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 8888886654 4544 7888888888888887763333 457888888888888775544444445555 78888888
Q ss_pred EcccchhHHHHHHhhcCCC------CCcEEEeeecccccccc---C--------------------------------Cc
Q 038220 691 HGDLILHEEALCKWIYNLK------GLQCLKMQSRITYTVDL---S--------------------------------DV 729 (866)
Q Consensus 691 ~~~~~~~~~~l~~~l~~~~------~L~~L~l~~~~~~~~~l---~--------------------------------~~ 729 (866)
+.|..... .+..+..++ .|+.|++++|.+..... . ..
T Consensus 182 ~~n~l~~~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 182 AANSLYSR--VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp CCSBSCCC--CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred CCCccccc--cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 88764221 111222333 38888888763211000 0 00
Q ss_pred cC--CCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCccc
Q 038220 730 QN--FPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMC 807 (866)
Q Consensus 730 ~~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p 807 (866)
+. .+++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+ ..+..+.++++|++|+|++|......+..+..++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 01 13678888888888776666778888888888888887763 3344567888888888888765444455667888
Q ss_pred ccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 808 NLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 808 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 888888888864333344577888888888888874
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-22 Score=224.14 Aligned_cols=267 Identities=16% Similarity=0.136 Sum_probs=216.6
Q ss_pred CCCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCccccccc-cccccccccEE
Q 038220 564 EYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHV 640 (866)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 640 (866)
.++.+++|+++++.+..+|.. +..+++|++|++++|.++.+|. .+..+++|++|++++|.+..+|. .+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 357899999999999999876 6889999999999999998875 89999999999999998888864 47899999999
Q ss_pred eccCccccccCCCC-CCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec
Q 038220 641 YFSEFREMVVNPPA-DASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 641 ~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
++++|... .+|.. ++.+++|++|++.++......+..++.+++|+.|++++|..... .+..+++|+.|++++|
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----CGGGCTTCSEEECCSS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----ccccccccceeecccc
Confidence 99999877 67766 58999999999999866655566688999999999999875432 2445666776666654
Q ss_pred ccccc-----------------ccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCC
Q 038220 720 ITYTV-----------------DLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGF 782 (866)
Q Consensus 720 ~~~~~-----------------~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 782 (866)
.+... .+|. ..+++|+.|++++|.++.. +.++.+++|+.|+|++|.+.+ ..+..+..+
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l 271 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKM 271 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTC
T ss_pred cccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-cChhHcccc
Confidence 32211 1111 1246899999999988653 578899999999999998774 445677899
Q ss_pred ccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 783 SQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 783 ~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
++|+.|++++|. +..++.....+|+|+.|++++|. ++.+|..+..+++|+.|++++|+.
T Consensus 272 ~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 272 QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp SSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCcc
Confidence 999999999975 45677777789999999999995 667888888999999999999984
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.2e-22 Score=234.92 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=190.9
Q ss_pred CCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCccccccccCCCCccEEecC
Q 038220 544 SRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLS 620 (866)
Q Consensus 544 ~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 620 (866)
++++.|.+.++ ....+..|..++.|++|++++|.+..+ |..+.++++|++|++++|.++.+|.. .+.+|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 67888888777 344456778888888888888887655 56678888888888888888888876 78888888888
Q ss_pred CCcccccc--ccccccccccEEeccCccccccCCCCCCCCCCC--ceecceeecC--CcchhHhh---------------
Q 038220 621 STLVDPIP--LVIWKMQQLKHVYFSEFREMVVNPPADASLPNL--QTLLGICICE--TSCVEQGL--------------- 679 (866)
Q Consensus 621 ~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~~~~~~~--~~~~~~~l--------------- 679 (866)
+|.+..+| ..+.++++|++|++++|.... ..+..+++| +.|++..+.. ....+..+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 88776654 678888888888888876542 234444555 6666665533 11111111
Q ss_pred -----------ccccCCCeEEEEcc----------------------------cchh--HHHHHHhhcCCCCCcEEEeee
Q 038220 680 -----------DKLLNLRELGLHGD----------------------------LILH--EEALCKWIYNLKGLQCLKMQS 718 (866)
Q Consensus 680 -----------~~l~~L~~L~l~~~----------------------------~~~~--~~~l~~~l~~~~~L~~L~l~~ 718 (866)
..+++|+.|++.++ .... ...++..+ ..++|+.|++++
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~ 285 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYN 285 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEec
Confidence 12333444444433 2111 11111111 123666666665
Q ss_pred ccccccccCCcc-----------------------------------------------------CCCCCceEEEEEeec
Q 038220 719 RITYTVDLSDVQ-----------------------------------------------------NFPPNLTELSLQFCF 745 (866)
Q Consensus 719 ~~~~~~~l~~~~-----------------------------------------------------~~~~~L~~L~L~~~~ 745 (866)
|.+.. .+|..+ ..+++|++|++++|.
T Consensus 286 n~l~~-~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 286 LTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEECS-CCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cEeec-cccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 44221 122111 567899999999999
Q ss_pred CCCCCccccCCCCCCCeeEEeccccCCC-eEEECCCCCccccEEEeecCCCCcceEEc-cCcc-----------------
Q 038220 746 LTEDPLKELEKLPNLRVLKLKQSSYLGK-EMVSSSGGFSQLQFLKLSNLCYLERWRIE-EGAM----------------- 806 (866)
Q Consensus 746 l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~----------------- 806 (866)
+++..+..++.+++|+.|+|++|.+.+. .++..+.++++|+.|++++|.....++.. ...+
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 9887788899999999999999987642 33456789999999999998765433321 2222
Q ss_pred -----cccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 807 -----CNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 807 -----p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
++|+.|++++| .++.+|.++..+++|+.|++++|.+
T Consensus 445 ~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC
Confidence 46666666666 3556777777888888888888873
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.4e-22 Score=214.72 Aligned_cols=265 Identities=17% Similarity=0.125 Sum_probs=135.4
Q ss_pred CeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCccccccccccccccccEEecc
Q 038220 566 KLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFS 643 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 643 (866)
+.|++|++++|.+..++. .+.++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 355666666666655543 456666666666666666655 5556666666666666666666655443 566666666
Q ss_pred CccccccCCCCCCCCCCCceecceeecCCc--chhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICICETS--CVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
+|......+..+..+++|++|++.++.... ..+..+..+++|+.|++++|.... ++..+ .++|+.|++++|.+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGL--PPSLTELHLDGNKI 204 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---CCSSC--CTTCSEEECTTSCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---CCccc--cccCCEEECCCCcC
Confidence 665542222334556666666655553321 223335555666666665554321 11111 14556666655542
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEE
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRI 801 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 801 (866)
. ...|..+..+++|+.|+|++|.+....+..++.+++|+.|+|++|.+. .++..+..+++|++|++++|+.. .++.
T Consensus 205 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~-~~~~ 280 (330)
T 1xku_A 205 T-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNIS-AIGS 280 (330)
T ss_dssp C-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred C-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCC-ccCh
Confidence 1 122344445555666666666555444444555566666666555544 33444555556666666555432 2211
Q ss_pred -cc------CcccccceeeEeecccCC--ccCCCccCCCCCCEEEEeCC
Q 038220 802 -EE------GAMCNLRRLEIIECMRLK--IVPSGLWPLTTLSNLKLGYM 841 (866)
Q Consensus 802 -~~------~~~p~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~ 841 (866)
.+ ...+.|+.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 11 123455556666555422 22344555555666655554
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=4.5e-23 Score=219.16 Aligned_cols=247 Identities=20% Similarity=0.221 Sum_probs=209.1
Q ss_pred CCceEEEecCC--CC--CccccccCCCeeEEEEecC-Cccc-cCcccccCCCCceEEEeeCCCCc-cccccccCCCCccE
Q 038220 544 SRVRSLLFFDI--SE--PVGSILEEYKLLQVLDLEG-VYMA-LIDSSIGNLIHLRYLDLRKTWLK-MLPSSMGNLFNLQS 616 (866)
Q Consensus 544 ~~lr~L~~~~~--~~--~~~~~~~~~~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~ 616 (866)
.+++.|.+.++ .. ..+..+.+++.|++|++++ +.+. .+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56888888877 33 5677899999999999995 7765 78999999999999999999998 88999999999999
Q ss_pred EecCCCccc-cccccccccccccEEeccCccccccCCCCCCCCC-CCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 617 LDLSSTLVD-PIPLVIWKMQQLKHVYFSEFREMVVNPPADASLP-NLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 617 L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
|++++|.+. .+|..+..+++|++|++++|...+.+|..++.++ +|+.|++.++.....++..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999776 7899999999999999999998778899999998 999999998866656666688887 9999999987
Q ss_pred chhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCe
Q 038220 695 ILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKE 774 (866)
Q Consensus 695 ~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 774 (866)
... ..+..+..+++|+.|++++|.+. ...|. +..+++|++|+|++|.+++..+..++.+++|+.|+|++|.+.+ .
T Consensus 209 l~~--~~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ 283 (313)
T 1ogq_A 209 LEG--DASVLFGSDKNTQKIHLAKNSLA-FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-E 283 (313)
T ss_dssp EEE--CCGGGCCTTSCCSEEECCSSEEC-CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-E
T ss_pred ccC--cCCHHHhcCCCCCEEECCCCcee-eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc-c
Confidence 532 24567888999999999998753 22333 5667999999999999987888889999999999999998875 4
Q ss_pred EEECCCCCccccEEEeecCCCCc
Q 038220 775 MVSSSGGFSQLQFLKLSNLCYLE 797 (866)
Q Consensus 775 ~~~~~~~~~~L~~L~l~~~~~l~ 797 (866)
++. ...+++|+.|++.+|+.+.
T Consensus 284 ip~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 284 IPQ-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCC-STTGGGSCGGGTCSSSEEE
T ss_pred CCC-CccccccChHHhcCCCCcc
Confidence 444 3889999999999987544
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.4e-22 Score=217.74 Aligned_cols=267 Identities=18% Similarity=0.122 Sum_probs=217.9
Q ss_pred CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCccccc-cccccccccccEEecc
Q 038220 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFS 643 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 643 (866)
..+++++++++.+..+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 368899999999988887664 689999999999998876 799999999999999988877 7789999999999999
Q ss_pred CccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT 723 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 723 (866)
+|... .+|..+. ++|++|++.++......+..+..+++|+.|++++|........+..+..+++|+.|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 99876 7777665 7999999998866666666689999999999999876433334466788999999999987643
Q ss_pred cccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEcc
Q 038220 724 VDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEE 803 (866)
Q Consensus 724 ~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 803 (866)
.+|... +++|++|++++|.+....+..++.+++|+.|+|++|.+.+ ..+..+..+++|++|++++|.. ..++...
T Consensus 185 -~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l 259 (330)
T 1xku_A 185 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL-VKVPGGL 259 (330)
T ss_dssp -SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCC-SSCCTTT
T ss_pred -cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcC-ccCChhh
Confidence 355433 3799999999999887777789999999999999988764 2223567899999999999864 4677777
Q ss_pred CcccccceeeEeecccCCccCC-Ccc------CCCCCCEEEEeCCCHH
Q 038220 804 GAMCNLRRLEIIECMRLKIVPS-GLW------PLTTLSNLKLGYMPFD 844 (866)
Q Consensus 804 ~~~p~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~~~~~ 844 (866)
..+++|+.|++++|+. +.+|. .+. ..++|+.|++++||..
T Consensus 260 ~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCcCEEECCCCcC-CccChhhcCCcccccccccccceEeecCccc
Confidence 8899999999999974 44443 222 3588999999999953
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=7.9e-23 Score=237.67 Aligned_cols=320 Identities=17% Similarity=0.147 Sum_probs=209.0
Q ss_pred cCCCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCc-ccccCCCCceEE
Q 038220 523 FLAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYL 594 (866)
Q Consensus 523 ~~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L 594 (866)
.+..++++.+..+. ...+..+++|++|.+.++ ....+..|.+++.|++|++++|.+..+| ..++++++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 45568888887765 235678999999999988 3445567899999999999999987665 679999999999
Q ss_pred EeeCCCCccccc-cccCCCCccEEecCCCcccc--ccccccccccccEEeccCccccccCCCCCCCCCC-----------
Q 038220 595 DLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDP--IPLVIWKMQQLKHVYFSEFREMVVNPPADASLPN----------- 660 (866)
Q Consensus 595 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~----------- 660 (866)
++++|.++.+|. .++++.+|++|++++|.+.. +|..+.++++|++|++++|......|..++.+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999998876 69999999999999997765 7899999999999999988654222222222222
Q ss_pred ----------------Cceecceeec------------------------------------------------------
Q 038220 661 ----------------LQTLLGICIC------------------------------------------------------ 670 (866)
Q Consensus 661 ----------------L~~L~~~~~~------------------------------------------------------ 670 (866)
|+.|++.++.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 2222211110
Q ss_pred ----CCcchhHhhccccCCCeEEEEcccchhHH-------------------HHHH--------------------hhcC
Q 038220 671 ----ETSCVEQGLDKLLNLRELGLHGDLILHEE-------------------ALCK--------------------WIYN 707 (866)
Q Consensus 671 ----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------~l~~--------------------~l~~ 707 (866)
.....+..+..+++|+.|++.++...... .++. ....
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 00001111223334444444333211000 0000 0023
Q ss_pred CCCCcEEEeeeccccc------------------------cccCCccCCCCCceEEEEEeecCCCCCc-cccCCCCCCCe
Q 038220 708 LKGLQCLKMQSRITYT------------------------VDLSDVQNFPPNLTELSLQFCFLTEDPL-KELEKLPNLRV 762 (866)
Q Consensus 708 ~~~L~~L~l~~~~~~~------------------------~~l~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~ 762 (866)
+++|+.|++++|.+.. ..++..+..+++|+.|++++|.+....+ ..+..+++|+.
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 4455555555433211 1112224445667777777666554433 35667778888
Q ss_pred eEEeccccCCCeEEECCCCCccccEEEeecCCCC-cceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCC
Q 038220 763 LKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL-ERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYM 841 (866)
Q Consensus 763 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 841 (866)
|++++|.+.+ ..+..+.++++|++|++++|... ..++..+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 426 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 8887776543 33445677888888888887754 245666778899999999988766555778888999999999988
Q ss_pred CH
Q 038220 842 PF 843 (866)
Q Consensus 842 ~~ 843 (866)
.+
T Consensus 505 ~l 506 (570)
T 2z63_A 505 QL 506 (570)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=8.3e-22 Score=220.24 Aligned_cols=274 Identities=16% Similarity=0.086 Sum_probs=222.7
Q ss_pred CCCCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEe
Q 038220 540 TRKSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLD 618 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 618 (866)
+..++++++|.+.++. ...+ .+..++.|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 4567899999999872 2233 5788999999999999998886 899999999999999999986 88999999999
Q ss_pred cCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhH
Q 038220 619 LSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHE 698 (866)
Q Consensus 619 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 698 (866)
+++|.+..+| +..+++|++|++++|... .++ ++.+++|+.|++..+.....+ . ++.+++|+.|++++|.....
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~~~~-~-~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKL-D-VTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCCCCC-C-CTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCccccc-c-cccCCcCCEEECCCCcccee
Confidence 9999888886 899999999999999876 443 889999999999888544444 2 78899999999999986442
Q ss_pred HHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEEC
Q 038220 699 EALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSS 778 (866)
Q Consensus 699 ~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 778 (866)
+ +..+++|+.|++++|.+... + +..+++|+.|++++|.+++. + ++.+++|+.|++++|.+.+..
T Consensus 186 ---~--l~~l~~L~~L~l~~N~l~~~--~--l~~l~~L~~L~Ls~N~l~~i--p-~~~l~~L~~L~l~~N~l~~~~---- 249 (457)
T 3bz5_A 186 ---D--VSQNKLLNRLNCDTNNITKL--D--LNQNIQLTFLDCSSNKLTEI--D-VTPLTQLTYFDCSVNPLTELD---- 249 (457)
T ss_dssp ---C--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCC----
T ss_pred ---c--cccCCCCCEEECcCCcCCee--c--cccCCCCCEEECcCCccccc--C-ccccCCCCEEEeeCCcCCCcC----
Confidence 2 77889999999999875432 2 56679999999999998773 2 889999999999999987622
Q ss_pred CCCCccccE----------EEeecCCCCcceEEccCcccccceeeEeecccCCccCC--------CccCCCCCCEEEEeC
Q 038220 779 SGGFSQLQF----------LKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPS--------GLWPLTTLSNLKLGY 840 (866)
Q Consensus 779 ~~~~~~L~~----------L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~--------~l~~l~~L~~L~l~~ 840 (866)
.+.|++|+. |++++|.....++ .+.+++|+.|++++|+.++.+|. .+..+++|+.|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 455665554 5555555555555 46889999999999988776664 255678999999998
Q ss_pred CCH
Q 038220 841 MPF 843 (866)
Q Consensus 841 ~~~ 843 (866)
|.+
T Consensus 328 N~l 330 (457)
T 3bz5_A 328 TEL 330 (457)
T ss_dssp CCC
T ss_pred Ccc
Confidence 874
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.3e-22 Score=216.10 Aligned_cols=283 Identities=16% Similarity=0.102 Sum_probs=192.5
Q ss_pred CceEEEecCC-CCCccccccCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCC
Q 038220 545 RVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSS 621 (866)
Q Consensus 545 ~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 621 (866)
+++.+.+.++ -..+|..+ .+.|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4666666655 12223222 256778888888776554 4677888888888888887766 56777888888888888
Q ss_pred CccccccccccccccccEEeccCccccccCCC-CCCCCCCCceecceeecCC--cchhHhhccccCCCeEEEEcccchhH
Q 038220 622 TLVDPIPLVIWKMQQLKHVYFSEFREMVVNPP-ADASLPNLQTLLGICICET--SCVEQGLDKLLNLRELGLHGDLILHE 698 (866)
Q Consensus 622 ~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~ 698 (866)
|.+..+|..+. ++|++|++++|... .+|. .+..+++|++|++.++... ...+..+..+ +|+.|++++|....
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 87777776655 77888888887766 4443 4677888888877776443 1333335555 77788887776432
Q ss_pred HHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEEC
Q 038220 699 EALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSS 778 (866)
Q Consensus 699 ~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 778 (866)
++..+ .++|+.|++++|.+. ...+..+..+++|+.|+|++|.+....+..++.+++|+.|+|++|.+. .++..
T Consensus 187 --l~~~~--~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~ 259 (332)
T 2ft3_A 187 --IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAG 259 (332)
T ss_dssp --CCSSS--CSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCTT
T ss_pred --cCccc--cCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecChh
Confidence 22222 257888888877642 223455667788999999998887766667888899999999888776 56666
Q ss_pred CCCCccccEEEeecCCCCcceEE-ccC------cccccceeeEeecccC--CccCCCccCCCCCCEEEEeCCC
Q 038220 779 SGGFSQLQFLKLSNLCYLERWRI-EEG------AMCNLRRLEIIECMRL--KIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 779 ~~~~~~L~~L~l~~~~~l~~~~~-~~~------~~p~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+..+++|+.|++++|+.. .++. .+. .+++|+.|++.+|+.. ...|..+..+++|+.|++++|.
T Consensus 260 l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 778889999999887643 3321 111 2577889999998865 3456667888999999998875
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=5.7e-22 Score=235.34 Aligned_cols=315 Identities=16% Similarity=0.080 Sum_probs=186.7
Q ss_pred CCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcc-cccCCCCceEEEe
Q 038220 525 AKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDS-SIGNLIHLRYLDL 596 (866)
Q Consensus 525 ~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l 596 (866)
.+++++.+.... ...+..+++|++|.+.++ ....+..|.+++.|++|++++|.+..+|. .++++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 445555555543 112445566666666554 23334455566666666666666655554 3566666666666
Q ss_pred eCCCCcccc-ccccCCCCccEEecCCCccccc-cccccccccccEEeccCccccccCCCCC--CCCCCCceecceeecCC
Q 038220 597 RKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSEFREMVVNPPAD--ASLPNLQTLLGICICET 672 (866)
Q Consensus 597 ~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~~~~~~~~ 672 (866)
++|.++.+| ..++++.+|++|++++|.+... |..+.++++|++|++++|......+..+ ..+++|+.|++.++...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 666666554 3456666666666666644433 3345566666666666655442222211 23456666666555443
Q ss_pred cchhHhhccccCCCeEEEEcccchh--HHHHHHhhcCCCCCcEEEeeeccccccccCCccCCC--CCceEEEEEeecCCC
Q 038220 673 SCVEQGLDKLLNLRELGLHGDLILH--EEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFP--PNLTELSLQFCFLTE 748 (866)
Q Consensus 673 ~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~l~~ 748 (866)
...+..+..+.+|+.|.+.++.... ...++..+ ..++|+.|++++|.+. ...|.++..+ ++|+.|+|++|.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCc
Confidence 3334445556666666665554321 12222222 3477888888876542 2334444444 358888988888877
Q ss_pred CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCc-----ceEE----ccCcccccceeeEeeccc
Q 038220 749 DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLE-----RWRI----EEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 749 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~----~~~~~p~L~~L~l~~c~~ 819 (866)
..+..++.+++|+.|+|++|.+.+ ..+..+.++++|+.|++++|.... .++. .++.+++|+.|++++|..
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 666778888889999988887764 344467788888888887653221 1221 345678888888888876
Q ss_pred CCccCCCccCCCCCCEEEEeCCC
Q 038220 820 LKIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 820 l~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
....|..+..+++|+.|++++|.
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCChhHhccccCCcEEECCCCc
Confidence 55555667778888888887764
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=5.9e-22 Score=230.40 Aligned_cols=266 Identities=16% Similarity=0.128 Sum_probs=217.7
Q ss_pred CCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcccccccc-ccccccccEEe
Q 038220 565 YKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVY 641 (866)
Q Consensus 565 ~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 641 (866)
++.+++|+++++.+..+|.. +.++++|++|+|++|.++.+|. .++.+.+|++|+|++|.+..+|.. +..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56789999999999988876 6789999999999999998765 899999999999999988888765 68999999999
Q ss_pred ccCccccccCCCC-CCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecc
Q 038220 642 FSEFREMVVNPPA-DASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRI 720 (866)
Q Consensus 642 l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 720 (866)
+++|... .+|.. ++.+++|++|++.++......+..++.+++|+.|++++|..... .+..+++|+.|++++|.
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----CGGGCTTCSEEECCSSC
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----ChhhhhhhhhhhcccCc
Confidence 9999877 66665 58999999999999866666666689999999999999875432 24456677777766653
Q ss_pred cccc-----------------ccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCc
Q 038220 721 TYTV-----------------DLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFS 783 (866)
Q Consensus 721 ~~~~-----------------~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 783 (866)
+... .++. ..+++|+.|+|++|.+++ +..++.+++|+.|+|++|.+.+ ..+..+++++
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 278 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 278 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred cccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-CCHHHhcCcc
Confidence 3211 1111 123689999999998865 3678899999999999998875 5566788999
Q ss_pred cccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 784 QLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 784 ~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+|+.|+|++|. +..++...+.+|+|+.|+|++|. +..+|..+..+++|+.|++++|++
T Consensus 279 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 279 RLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp SCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC
Confidence 99999999975 45677777889999999999996 457888889999999999999984
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3e-21 Score=223.06 Aligned_cols=155 Identities=18% Similarity=0.077 Sum_probs=89.9
Q ss_pred cccCCCeEEEEcccchhHH-HHHHhhcCCCCCcEEEeeeccccccc-cCCccCCCCCceEEEEEeecCCCCCccccCCCC
Q 038220 681 KLLNLRELGLHGDLILHEE-ALCKWIYNLKGLQCLKMQSRITYTVD-LSDVQNFPPNLTELSLQFCFLTEDPLKELEKLP 758 (866)
Q Consensus 681 ~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~ 758 (866)
.+++|+.|++++|...... .....+..+++|+.|++++|.+.... .+..+..+++|+.|+|++|.++ ..+..++.++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 4566666666666542211 00122444555555555554321100 0012233444444444444443 2222333344
Q ss_pred ---------------------CCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeec
Q 038220 759 ---------------------NLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIEC 817 (866)
Q Consensus 759 ---------------------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c 817 (866)
+|+.|+|++|.+.+ ....+++|++|++++|.. ..++. .+.+++|+.|++++|
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-----~~~~l~~L~~L~Ls~N~l-~~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRNKL-KTLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-----CCCCCTTCCEEECCSSCC-SSCCC-GGGCTTCCEEECCSS
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCChhh-----hcccCChhcEEECCCCcc-CcCCC-cccCccCCEEecCCC
Confidence 55555555555443 124789999999999864 45654 457899999999999
Q ss_pred ccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 818 MRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 818 ~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
......|..+..+++|+.|++++|++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 75555555689999999999999884
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=6.8e-22 Score=212.42 Aligned_cols=266 Identities=17% Similarity=0.117 Sum_probs=215.9
Q ss_pred CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccc-cccccccccccEEecc
Q 038220 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFS 643 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 643 (866)
..+++++++++.+..+|..+. ++|++|++++|.++.+| ..++++.+|++|++++|.+..+ |..+..+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998764 68999999999999885 5799999999999999988877 6789999999999999
Q ss_pred CccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT 723 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 723 (866)
+|... .+|..+. ++|++|++.++......+..+..+++|+.|++++|........+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 99876 7787766 89999999988655554555889999999999998764333334455566 8999999988643
Q ss_pred cccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEcc
Q 038220 724 VDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEE 803 (866)
Q Consensus 724 ~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 803 (866)
.+|... +++|++|++++|.+....+..+..+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|.. ..+|...
T Consensus 186 -~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l 260 (332)
T 2ft3_A 186 -GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKL-SRVPAGL 260 (332)
T ss_dssp -SCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCC-CBCCTTG
T ss_pred -ccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcC-eecChhh
Confidence 355433 3799999999999988777789999999999999998875 3333567899999999999864 5677778
Q ss_pred CcccccceeeEeecccCCccCC-CccC------CCCCCEEEEeCCCHH
Q 038220 804 GAMCNLRRLEIIECMRLKIVPS-GLWP------LTTLSNLKLGYMPFD 844 (866)
Q Consensus 804 ~~~p~L~~L~l~~c~~l~~lp~-~l~~------l~~L~~L~l~~~~~~ 844 (866)
..+++|+.|++++|+. +.+|. .+.. .++|+.|++.+||..
T Consensus 261 ~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCccc
Confidence 8999999999999974 44443 2322 578999999999953
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.4e-21 Score=227.68 Aligned_cols=301 Identities=15% Similarity=0.115 Sum_probs=149.3
Q ss_pred CCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccc------cCcc----cccCCCCceEEEeeCCCCcccc-c
Q 038220 540 TRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMA------LIDS----SIGNLIHLRYLDLRKTWLKMLP-S 606 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~------~lp~----~i~~l~~L~~L~l~~~~i~~lp-~ 606 (866)
+..+++|++|.+.++ ....+..+..++.|++|+++++... .+|. .+..+++|++|++++|.+..++ .
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 445566666666655 2333445555666666666554321 2332 4455566666666666655443 3
Q ss_pred cccCCCCccEEecCCC----------------------------ccccc-cccccccccccEEeccCccccccCC-CCCC
Q 038220 607 SMGNLFNLQSLDLSST----------------------------LVDPI-PLVIWKMQQLKHVYFSEFREMVVNP-PADA 656 (866)
Q Consensus 607 ~i~~l~~L~~L~l~~~----------------------------~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p-~~~~ 656 (866)
.+..+++|++|++++| .+..+ |..+..+++|++|++++|.....+| ..+.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 3555555566555554 33222 2234444444444444444332222 2334
Q ss_pred CCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCc
Q 038220 657 SLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNL 736 (866)
Q Consensus 657 ~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 736 (866)
.+++|+.|++.++......+..+..+++|+.|++.++.......++..+..+++|+.|++++|.+. ...+..+..+++|
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhcccccc
Confidence 444444444444422222222244444555555544433222233344555566666666655432 2223334555666
Q ss_pred eEEEEEeecCCCC--------CccccCCCCCCCeeEEeccccCCCeEEE-CCCCCccccEEEeecCCCCcceEEc-cCcc
Q 038220 737 TELSLQFCFLTED--------PLKELEKLPNLRVLKLKQSSYLGKEMVS-SSGGFSQLQFLKLSNLCYLERWRIE-EGAM 806 (866)
Q Consensus 737 ~~L~L~~~~l~~~--------~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~ 806 (866)
+.|+|++|.+... ....++.+++|+.|+|++|.+. .++. .+.++++|+.|++++|.. ..++.. +..+
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l 583 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQ 583 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHHcccccCcceeECCCCCC-CcCCHhHhCCC
Confidence 6666666655432 1122555666666666666554 2222 345666667777666543 333322 3456
Q ss_pred cccceeeEeecccCCccCC-Ccc-CCCCCCEEEEeCCCHHH
Q 038220 807 CNLRRLEIIECMRLKIVPS-GLW-PLTTLSNLKLGYMPFDF 845 (866)
Q Consensus 807 p~L~~L~l~~c~~l~~lp~-~l~-~l~~L~~L~l~~~~~~~ 845 (866)
++|+.|++++|. ++.++. .+. .+++|+.|++++||+..
T Consensus 584 ~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 584 VSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp TTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCEEECCCCc-CCccChhHhcccccccCEEEccCCCccc
Confidence 677777777664 333333 233 56777777777777443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=5.4e-21 Score=204.31 Aligned_cols=229 Identities=18% Similarity=0.165 Sum_probs=144.7
Q ss_pred CCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCC
Q 038220 543 SSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSS 621 (866)
Q Consensus 543 ~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 621 (866)
..+++.|.+.++ -..++..+.++++|++|++++|.+..+|..++++++|++|+|++|.++.+|..++++.+|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 345667777666 2345566777999999999999999999999999999999999999999999999999999999999
Q ss_pred C-ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHH
Q 038220 622 T-LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEA 700 (866)
Q Consensus 622 ~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 700 (866)
| .+..+|..+... ..+..+..+++|++|++.++... .++..++.+++|+.|++++|...
T Consensus 160 n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~---- 219 (328)
T 4fcg_A 160 CPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---- 219 (328)
T ss_dssp ETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC----
T ss_pred CCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC----
Confidence 7 777888766540 11122333444444444444222 33333555666666666665431
Q ss_pred HHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCC
Q 038220 701 LCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSG 780 (866)
Q Consensus 701 l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 780 (866)
.+|..+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+ .++..+.
T Consensus 220 ------------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~ 274 (328)
T 4fcg_A 220 ------------------------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIH 274 (328)
T ss_dssp ------------------------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGG
T ss_pred ------------------------cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhh
Confidence 122223334445555555554444444455555556666665555443 4444455
Q ss_pred CCccccEEEeecCCCCcceEEccCcccccceeeEee
Q 038220 781 GFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIE 816 (866)
Q Consensus 781 ~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~ 816 (866)
++++|+.|+|++|+....+|..++.+++|+.+.+..
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 566666666666665555555555666666665553
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.6e-21 Score=226.84 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=103.7
Q ss_pred cCCCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcc-cccCCCCceEE
Q 038220 523 FLAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDS-SIGNLIHLRYL 594 (866)
Q Consensus 523 ~~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L 594 (866)
.+..++++.+..+. ...+..+++|++|.+.++ ....+..|.++++|++|+|++|.+..+|. .+.++++|++|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 45678888887766 234678899999999987 34555678999999999999999988875 57899999999
Q ss_pred EeeCCCCccccc-cccCCCCccEEecCCCcccc--ccccccccccccEEeccCcccc
Q 038220 595 DLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDP--IPLVIWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 595 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~ 648 (866)
++++|.++.+|. .++++.+|++|++++|.+.. +|..+..+++|++|++++|...
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 999999998875 58899999999999996654 5778889999999999887543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=3.6e-21 Score=204.36 Aligned_cols=225 Identities=21% Similarity=0.138 Sum_probs=120.0
Q ss_pred CeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCccc---cccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 566 KLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKML---PSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
+.|++|++++|.+..+|.. +.++++|++|++++|.++.+ |..+..+.+|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3566666666666666554 45666666666666666543 4455566666666666666666666666666666666
Q ss_pred ccCccccccCC--CCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec
Q 038220 642 FSEFREMVVNP--PADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 642 l~~~~~~~~~p--~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
+++|... ..+ ..+..+++|++| ++++|..
T Consensus 108 l~~n~l~-~~~~~~~~~~l~~L~~L------------------------~l~~n~l------------------------ 138 (306)
T 2z66_A 108 FQHSNLK-QMSEFSVFLSLRNLIYL------------------------DISHTHT------------------------ 138 (306)
T ss_dssp CTTSEEE-SSTTTTTTTTCTTCCEE------------------------ECTTSCC------------------------
T ss_pred CCCCccc-ccccchhhhhccCCCEE------------------------ECCCCcC------------------------
Confidence 6666544 222 233333444443 3333321
Q ss_pred cccccccCCccCCCCCceEEEEEeecCCC-CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcc
Q 038220 720 ITYTVDLSDVQNFPPNLTELSLQFCFLTE-DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLER 798 (866)
Q Consensus 720 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 798 (866)
....+..+..+++|++|+|++|.+.. ..+..++.+++|+.|+|++|.+.+ ..+..+..+++|++|++++|.....
T Consensus 139 ---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 139 ---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp ---EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred ---CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCcc
Confidence 11112223333444444444444432 223344455555555555554432 1123344555555555555543322
Q ss_pred eEEccCcccccceeeEeecccCCccCCCccCCC-CCCEEEEeCCCH
Q 038220 799 WRIEEGAMCNLRRLEIIECMRLKIVPSGLWPLT-TLSNLKLGYMPF 843 (866)
Q Consensus 799 ~~~~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~~ 843 (866)
.+..+..+++|+.|++++|......|..+..++ +|+.|++++|++
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 222345567777777777765555566666664 778888877764
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=198.07 Aligned_cols=249 Identities=18% Similarity=0.138 Sum_probs=164.7
Q ss_pred CeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
+.|++|++++|.+..+|. .+.++++|++|++++|.++.++ ..++++.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467888888888776665 6788888888888888887664 4678888888888888877777766 777888888888
Q ss_pred cCccccccCCC--CCCCCCCCceecceeecC-CcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec
Q 038220 643 SEFREMVVNPP--ADASLPNLQTLLGICICE-TSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 643 ~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
++|... .+|. .+..+++|++|++.++.. ....+..++.+++|+.|++++|.
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------------- 185 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD------------------------- 185 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-------------------------
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-------------------------
Confidence 887665 5554 466677777777666522 22222234444555555554443
Q ss_pred cccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEE--ECCCCCccccEEEeecCCCCc
Q 038220 720 ITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMV--SSSGGFSQLQFLKLSNLCYLE 797 (866)
Q Consensus 720 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~ 797 (866)
+ ....|..+..+++|++|++++|.+.......++.+++|+.|+|++|.+.+.... ......+.++.+++.++....
T Consensus 186 -l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 186 -L-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp -C-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred -c-CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 2 122345556667777777777776443333345577778888877776542111 112345667777887765432
Q ss_pred ----ceEEccCcccccceeeEeecccCCccCCCc-cCCCCCCEEEEeCCCH
Q 038220 798 ----RWRIEEGAMCNLRRLEIIECMRLKIVPSGL-WPLTTLSNLKLGYMPF 843 (866)
Q Consensus 798 ----~~~~~~~~~p~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~~ 843 (866)
.++.....+++|+.|++++|. ++.+|..+ ..+++|+.|++++|++
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 233345678899999999885 55788774 7899999999999874
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.6e-20 Score=207.03 Aligned_cols=244 Identities=19% Similarity=0.145 Sum_probs=137.8
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccc-ccccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 646 (866)
+.++.++..+..+|..+. ++|++|+|++|.++.+ |..+.++.+|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344555555555554433 3566666666666544 345556666666666666555543 345556666666666655
Q ss_pred ccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccccccc
Q 038220 647 EMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDL 726 (866)
Q Consensus 647 ~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l 726 (866)
.....+..+..+++|++|++.++......+..+..+++|+.|+++++. .+....
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--------------------------~l~~i~ 188 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--------------------------KLEYIS 188 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--------------------------TCCEEC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--------------------------CccccC
Confidence 442222234555555555555543222222224444444444444321 111111
Q ss_pred CCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcc
Q 038220 727 SDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAM 806 (866)
Q Consensus 727 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 806 (866)
+..+..+++|++|+|++|.+... +.+..+++|+.|+|++|.+.+ ..+..+.++++|+.|++++|......+..+..+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 22344456667777776666532 356677777777777776653 334456777788888887765543333445677
Q ss_pred cccceeeEeecccCCccC-CCccCCCCCCEEEEeCCCHH
Q 038220 807 CNLRRLEIIECMRLKIVP-SGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 807 p~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~ 844 (866)
++|+.|+|++|.. +.+| ..+..+++|+.|++++||+.
T Consensus 266 ~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 266 ASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCC-SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcC-CccChHHhccccCCCEEEccCCCcC
Confidence 8888888888854 4444 44677888888888888753
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=4.5e-20 Score=195.83 Aligned_cols=225 Identities=17% Similarity=0.121 Sum_probs=167.7
Q ss_pred CCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC---cccccCCCCceEEEeeCCCCccccccccCCCCccEE
Q 038220 543 SSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI---DSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSL 617 (866)
Q Consensus 543 ~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 617 (866)
.++++.|.+.++ .......|.+++.|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 468999999987 344445689999999999999988644 567778999999999999999999999999999999
Q ss_pred ecCCCccccccc--cccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCc-chhHhhccccCCCeEEEEccc
Q 038220 618 DLSSTLVDPIPL--VIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETS-CVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 618 ~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 694 (866)
++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++.++.... .++..+..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------- 173 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------- 173 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh-------------
Confidence 999998888874 68899999999999998775566667777777777766553222 12222333
Q ss_pred chhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCe
Q 038220 695 ILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKE 774 (866)
Q Consensus 695 ~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 774 (866)
+++|+.|++++|.+ ....|..+..+++|+.|+|++|.++......++.+++|+.|+|++|.+.+ .
T Consensus 174 -------------l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 238 (306)
T 2z66_A 174 -------------LRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-S 238 (306)
T ss_dssp -------------CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-C
T ss_pred -------------CcCCCEEECCCCCc-CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-c
Confidence 44444444444432 22235556667788888888888776665567788888888888887764 3
Q ss_pred EEECCCCCc-cccEEEeecCCC
Q 038220 775 MVSSSGGFS-QLQFLKLSNLCY 795 (866)
Q Consensus 775 ~~~~~~~~~-~L~~L~l~~~~~ 795 (866)
.+..+..++ +|++|++++|+.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCE
T ss_pred CHHHHHhhhccCCEEEccCCCe
Confidence 344556664 788888888764
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=205.50 Aligned_cols=244 Identities=19% Similarity=0.135 Sum_probs=136.1
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCcccccc-ccccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 646 (866)
+.++.++..+..+|..+. .++++|+|++|.++.++ ..+.++.+|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 345555555555555443 45666666666666554 45566666666666666555554 345566666666666665
Q ss_pred ccccCC-CCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccc
Q 038220 647 EMVVNP-PADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVD 725 (866)
Q Consensus 647 ~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 725 (866)
.. .+| ..+..+++|++|++.++......+..+..+++|+.|+++++. .+...
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--------------------------~l~~i 176 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--------------------------RLSYI 176 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--------------------------TCCEE
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--------------------------Cccee
Confidence 54 333 235555555555555543222222223444444444444321 11111
Q ss_pred cCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCc
Q 038220 726 LSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGA 805 (866)
Q Consensus 726 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 805 (866)
.+..+..+++|++|+|++|.++.. +.+..+++|+.|+|++|.+.+ ..+..+.++++|+.|++++|......+..+..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred CcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 222344456666666666665432 246667777777777776653 22345667777777777776543322334566
Q ss_pred ccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCHH
Q 038220 806 MCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 806 ~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~ 844 (866)
+++|+.|+|++|......+..+..+++|+.|++++||+.
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 788888888877543333334577888888888887753
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3e-19 Score=199.30 Aligned_cols=284 Identities=18% Similarity=0.195 Sum_probs=151.8
Q ss_pred CCceEEEEecCCCcCCC-CCCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCc
Q 038220 525 AKARRLAIHFGIPSQTR-KSSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLK 602 (866)
Q Consensus 525 ~~~r~l~i~~~~~~~~~-~~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~ 602 (866)
.+++.+.+..+....+. ..++|+.|.+.++. ..++.. .+.|++|++++|.+..+| .++++++|++|++++|.++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc
Confidence 44555555544422211 23566666665551 111111 145666666666666666 4666666666666666666
Q ss_pred cccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccc
Q 038220 603 MLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKL 682 (866)
Q Consensus 603 ~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 682 (866)
.+|..+ .+|++|++++|.+..+| .+..+++|++|++++|... .+|... ++|++|++.++... .++. ++.+
T Consensus 167 ~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l 236 (454)
T 1jl5_A 167 KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE-ELPE-LQNL 236 (454)
T ss_dssp CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-SCCC-CTTC
T ss_pred ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCCc---CcccEEECcCCcCC-cccc-cCCC
Confidence 666433 36666666666666665 4666666666666666554 344322 35666666555332 4443 5566
Q ss_pred cCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCcc-----------------CCCCCceEEEEEeec
Q 038220 683 LNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQ-----------------NFPPNLTELSLQFCF 745 (866)
Q Consensus 683 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~-----------------~~~~~L~~L~L~~~~ 745 (866)
++|+.|++++|.... ++. .+++|+.|++++|.+. .+|... ..+++|+.|++++|.
T Consensus 237 ~~L~~L~l~~N~l~~---l~~---~~~~L~~L~l~~N~l~--~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT---LPD---LPPSLEALNVRDNYLT--DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308 (454)
T ss_dssp TTCCEEECCSSCCSS---CCS---CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCc---ccc---cccccCEEECCCCccc--ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence 666666666654321 111 1245555555554421 122211 112344455554444
Q ss_pred CCCCCccccCCC-CCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCC--c
Q 038220 746 LTEDPLKELEKL-PNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLK--I 822 (866)
Q Consensus 746 l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~--~ 822 (866)
+.. +..+ ++|+.|++++|.+.+ ++ ..+++|+.|++++|.. ..++. .+++|+.|++++|+... .
T Consensus 309 l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~l-~~lp~---~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 309 IRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNHL-AEVPE---LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp CSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred CCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCcc-ccccc---hhhhccEEECCCCCCCcCCC
Confidence 332 2233 478888888777664 22 2368899999988754 44544 57899999999998766 6
Q ss_pred cCCCccCC-------------CCCCEEEEeCCCHH
Q 038220 823 VPSGLWPL-------------TTLSNLKLGYMPFD 844 (866)
Q Consensus 823 lp~~l~~l-------------~~L~~L~l~~~~~~ 844 (866)
+|..+..+ ++|+.|++++|++.
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCTTCCEEECCC-----------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 78888777 88999999998853
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=7e-19 Score=202.25 Aligned_cols=236 Identities=19% Similarity=0.107 Sum_probs=145.3
Q ss_pred CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCc
Q 038220 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEF 645 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 645 (866)
++|++|++++|.+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 456666666666655554 34566666666666666654 45566666666665555554 4455666666665
Q ss_pred cccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccc
Q 038220 646 REMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVD 725 (866)
Q Consensus 646 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 725 (866)
... .+|.. +++|++|++.+|... .++. .+++|+.|++.+|..... + ..+++|+.|++++|.+. .
T Consensus 132 ~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l---~---~~~~~L~~L~Ls~N~l~--~ 195 (622)
T 3g06_A 132 QLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSL---P---MLPSGLQELSVSDNQLA--S 195 (622)
T ss_dssp CCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCC---C---CCCTTCCEEECCSSCCS--C
T ss_pred CCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCC---c---ccCCCCcEEECCCCCCC--C
Confidence 544 44442 355666665555222 2221 234566666666654221 1 33567777777776532 2
Q ss_pred cCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCc
Q 038220 726 LSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGA 805 (866)
Q Consensus 726 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 805 (866)
+|. .+++|+.|++++|.++..+ ..+++|+.|+|++|.+.+ ++ ..+++|+.|++++|.. ..++. .
T Consensus 196 l~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L-~~lp~---~ 259 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRL-TSLPM---L 259 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-SCCCC---C
T ss_pred CCC---ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCC-CcCCc---c
Confidence 333 2467888888888765322 234778888888887764 22 5667888888888743 44544 5
Q ss_pred ccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 806 MCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 806 ~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+++|+.|++++|. ++.+|..+.++++|+.|++++|++
T Consensus 260 ~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence 6788888888874 557788888888888888888874
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=192.35 Aligned_cols=249 Identities=19% Similarity=0.156 Sum_probs=192.5
Q ss_pred CCceEEEecCC--CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEec
Q 038220 544 SRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDL 619 (866)
Q Consensus 544 ~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 619 (866)
++++.|.+.++ ....+..+.+++.|++|++++|.+..+ |..+.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 58999999887 344445789999999999999998866 45699999999999999999999876 899999999999
Q ss_pred CCCccccccc--cccccccccEEeccCcc-ccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccch
Q 038220 620 SSTLVDPIPL--VIWKMQQLKHVYFSEFR-EMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLIL 696 (866)
Q Consensus 620 ~~~~~~~lp~--~i~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 696 (866)
++|.+..+|. .+..+++|++|++++|. .....+..++.+++|++|++.++......+..++.+++|++|++++|...
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999999987 68899999999999985 44334567899999999999998666665666899999999999998763
Q ss_pred hHHHHHHhhcCCCCCcEEEeeeccccccccCC--ccCCCCCceEEEEEeecCCCC----CccccCCCCCCCeeEEecccc
Q 038220 697 HEEALCKWIYNLKGLQCLKMQSRITYTVDLSD--VQNFPPNLTELSLQFCFLTED----PLKELEKLPNLRVLKLKQSSY 770 (866)
Q Consensus 697 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~ 770 (866)
... ...+..+++|+.|++++|.+....... .....+.++.++|+.+.+.+. .+..++.+++|+.|+|++|.+
T Consensus 212 ~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 212 LLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp THH--HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cch--hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 322 123445789999999987653222111 122356788888888877543 334567788888888888877
Q ss_pred CCCeEEEC-CCCCccccEEEeecCCCC
Q 038220 771 LGKEMVSS-SGGFSQLQFLKLSNLCYL 796 (866)
Q Consensus 771 ~~~~~~~~-~~~~~~L~~L~l~~~~~l 796 (866)
. .++.. +..+++|++|++++|+..
T Consensus 290 ~--~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 290 K--SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp C--CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C--ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6 34444 467888888888887653
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.1e-20 Score=197.75 Aligned_cols=248 Identities=15% Similarity=0.072 Sum_probs=193.3
Q ss_pred ccccCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccccccccc
Q 038220 560 SILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLK 638 (866)
Q Consensus 560 ~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 638 (866)
..+..++.|++|++++|.+..++ ..+.++++|++|++++|.++.+++ +..+++|++|++++|.+..+| ..++|+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 45667788999999999987665 578999999999999999987775 889999999999999877766 348999
Q ss_pred EEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhh-cCCCCCcEEEee
Q 038220 639 HVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWI-YNLKGLQCLKMQ 717 (866)
Q Consensus 639 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l~ 717 (866)
+|++++|......+. .+++|++|++.++......+..++.+++|+.|++++|...... +..+ ..+++|+.|+++
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQ 177 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECT
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--HHHHhhccCcCCEEECC
Confidence 999999887633322 3678999999888655555545788899999999988753211 2223 467899999999
Q ss_pred eccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCC-
Q 038220 718 SRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL- 796 (866)
Q Consensus 718 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l- 796 (866)
+|.+. .++... .+++|+.|+|++|.++..+ +.+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+..
T Consensus 178 ~N~l~--~~~~~~-~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 178 YNFIY--DVKGQV-VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp TSCCC--EEECCC-CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCcCc--cccccc-ccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccC
Confidence 88743 223322 4789999999999987544 45888999999999999887 56667888999999999999876
Q ss_pred cceEEccCcccccceeeEeecccCCcc
Q 038220 797 ERWRIEEGAMCNLRRLEIIECMRLKIV 823 (866)
Q Consensus 797 ~~~~~~~~~~p~L~~L~l~~c~~l~~l 823 (866)
..++...+.+++|+.|++.+|..++..
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHhccccceEEECCCchhccCC
Confidence 344555678999999999988776644
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=194.05 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=133.6
Q ss_pred CeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccccc-cccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l 642 (866)
+.+++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++.+|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34566666666665443 45666666666666666666554 456666666666666666666654 3566666666666
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchh-HhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVE-QGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
++|......+..+..+++|++|++.++.....++ ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI----PNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----CCCTTCSSCCEEECTTSCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----cccCCCcccCEEECCCCcc
Confidence 6665553333345666666666666543322222 2355666666666666654321 1245566677777766643
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
....|..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|+.
T Consensus 220 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 -SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCE
T ss_pred -CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCc
Confidence 22335556666777777777777766666667777777777777776653 2223345677777777777653
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.3e-18 Score=195.34 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=121.4
Q ss_pred eeEEEEecCCccccC-cccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCcccccccc-ccccccccEEecc
Q 038220 567 LLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFS 643 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 643 (866)
.|++|+|++|.+..+ |..+.++++|++|+|++|.++.++ ..+.++.+|++|+|++|.+..+|.. +..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 455566666655433 344555666666666666655443 4455566666666666655555543 4556666666666
Q ss_pred CccccccCCCCCCCCCCCceecceeecCCcchh-HhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccc
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICICETSCVE-QGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITY 722 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 722 (866)
+|......+..+..+++|+.|++.++.....++ ..+..+++|+.|++++|..... ..+..+++|+.|++++|.+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N~l- 230 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGNHF- 230 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTSCC-
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCCcC-
Confidence 655542223345556666666555533322222 2255556666666665543221 1244556666666666543
Q ss_pred ccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCC
Q 038220 723 TVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLC 794 (866)
Q Consensus 723 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 794 (866)
....|..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+ ..+..+..+++|+.|+|++|+
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCC
Confidence 12234455556666666666666665555556666677777776666553 222234556666777766655
No 61
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.77 E-value=2e-19 Score=156.32 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhchHHHHHHHHH
Q 038220 4 FIVSLLIEKIATQLMEEAISFSRVRNQIEWIEGELKRMQCFLKDADAQ--QDSDERVRNWVADVRDVAYDTEDVIDSYIF 81 (866)
Q Consensus 4 ~~v~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~d~~yd~ed~ld~~~~ 81 (866)
|+|+.+++||.+++.+|+.++.||++++++|+++|++|++||.+|+.+ +..|++++.|+++|||+|||+||+||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999987 568999999999999999999999999999
Q ss_pred Hhhhc
Q 038220 82 KMAQK 86 (866)
Q Consensus 82 ~~~~~ 86 (866)
+....
T Consensus 81 ~~~~~ 85 (115)
T 3qfl_A 81 QVDGI 85 (115)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 87643
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=2.1e-18 Score=180.81 Aligned_cols=246 Identities=17% Similarity=0.104 Sum_probs=124.5
Q ss_pred eeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCc-cccc-cccccccccccEEec
Q 038220 567 LLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTL-VDPI-PLVIWKMQQLKHVYF 642 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L~l 642 (866)
.|+.|+++++.+..++ ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. +..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4444555555444333 2344445555555555444443 3344444555555554442 4444 333444445555555
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITY 722 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 722 (866)
++|......|..+. .+++|+.|++++|..... ....+..+++|+.|++++|.+.
T Consensus 113 ~~n~l~~~~~~~~~------------------------~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 113 DRCGLQELGPGLFR------------------------GLAALQYLYLQDNALQAL--PDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TTSCCCCCCTTTTT------------------------TCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCEECHhHhh------------------------CCcCCCEEECCCCccccc--CHhHhccCCCccEEECCCCccc
Confidence 44444322233334 444444444444432110 0112344555666666555431
Q ss_pred ccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEc
Q 038220 723 TVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIE 802 (866)
Q Consensus 723 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 802 (866)
...+..+..+++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|+........
T Consensus 167 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 167 -SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred -ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 1223345567788888888888776666777888888888888777764 22233567888888888887643221100
Q ss_pred cCcccccceeeEeecccCCccCCCccC--CCCCCEEEEeCC
Q 038220 803 EGAMCNLRRLEIIECMRLKIVPSGLWP--LTTLSNLKLGYM 841 (866)
Q Consensus 803 ~~~~p~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~~ 841 (866)
..+..|+.+....+...-..|..+.. +..++..++.+|
T Consensus 245 -~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 245 -PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp -HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred -HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 01233455555544433344544432 444554455554
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.6e-18 Score=204.17 Aligned_cols=322 Identities=19% Similarity=0.161 Sum_probs=220.7
Q ss_pred CCCceEEEEecCC-----CcCCCCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcc-cccCCCCceEEE
Q 038220 524 LAKARRLAIHFGI-----PSQTRKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDS-SIGNLIHLRYLD 595 (866)
Q Consensus 524 ~~~~r~l~i~~~~-----~~~~~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 595 (866)
..+++.+.+..+. ...+..+++|++|.+.++ ....+..|.+++.|++|++++|.+..+|. .++++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 4567888887765 223677899999999987 44455678999999999999999988875 489999999999
Q ss_pred eeCCCCcc--ccccccCCCCccEEecCCCccccccc-ccccccc------------------------------------
Q 038220 596 LRKTWLKM--LPSSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQ------------------------------------ 636 (866)
Q Consensus 596 l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~------------------------------------ 636 (866)
+++|.++. +|..++.+.+|++|++++|.+..++. .+..+.+
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999874 57888999999999999886654431 2211111
Q ss_pred --------------------------------------------------------------------------------
Q 038220 637 -------------------------------------------------------------------------------- 636 (866)
Q Consensus 637 -------------------------------------------------------------------------------- 636 (866)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred ---------------ccEEeccCcccccc-------------------CCCCCCCCCCCceecceeecCC----------
Q 038220 637 ---------------LKHVYFSEFREMVV-------------------NPPADASLPNLQTLLGICICET---------- 672 (866)
Q Consensus 637 ---------------L~~L~l~~~~~~~~-------------------~p~~~~~l~~L~~L~~~~~~~~---------- 672 (866)
|++|++.++..... .+.....+++|+.|++..+...
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 11111111110000 0001112344444444332110
Q ss_pred ---------------cchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCce
Q 038220 673 ---------------SCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLT 737 (866)
Q Consensus 673 ---------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 737 (866)
...+..+..+++|+.+++..+...... -...+..+++++.++++.|.. ....+..+..+++|+
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l-~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLE 472 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCC-EECCTTTTTTCTTCC
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccc-ccccccccccccccccccccc-ccccccccccchhhh
Confidence 001112445678888888766432111 113456788999999988764 233455667788999
Q ss_pred EEEEEeecCCC-CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEee
Q 038220 738 ELSLQFCFLTE-DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIE 816 (866)
Q Consensus 738 ~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~ 816 (866)
.|+|++|.... ..+..++.+++|+.|+|++|.+.+ ..+..+.++++|++|+|++|....-.+..+..+++|+.|+|++
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 99999986543 345678999999999999998874 3455688999999999999865443345578899999999999
Q ss_pred cccCCccCCCccCC-CCCCEEEEeCCCHHHHHH
Q 038220 817 CMRLKIVPSGLWPL-TTLSNLKLGYMPFDFDLM 848 (866)
Q Consensus 817 c~~l~~lp~~l~~l-~~L~~L~l~~~~~~~~~~ 848 (866)
|......|..+.++ ++|+.|++++||+...+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 98776667788887 689999999998655444
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=3e-21 Score=217.99 Aligned_cols=319 Identities=19% Similarity=0.096 Sum_probs=186.5
Q ss_pred CCceEEEEecCCCc---------CCCCCCCceEEEecCCC---CCccccccCCC----eeEEEEecCCccc-----cCcc
Q 038220 525 AKARRLAIHFGIPS---------QTRKSSRVRSLLFFDIS---EPVGSILEEYK----LLQVLDLEGVYMA-----LIDS 583 (866)
Q Consensus 525 ~~~r~l~i~~~~~~---------~~~~~~~lr~L~~~~~~---~~~~~~~~~~~----~Lr~L~l~~~~~~-----~lp~ 583 (866)
.+++.+.+...... .+..+++|++|.+.++. ......+..++ .|++|++++|.+. .+|.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 34555665554411 23456777777777662 11112233333 5778888877765 4566
Q ss_pred cccCCCCceEEEeeCCCCccc-cccc-----cCCCCccEEecCCCcccc-----ccccccccccccEEeccCccccccCC
Q 038220 584 SIGNLIHLRYLDLRKTWLKML-PSSM-----GNLFNLQSLDLSSTLVDP-----IPLVIWKMQQLKHVYFSEFREMVVNP 652 (866)
Q Consensus 584 ~i~~l~~L~~L~l~~~~i~~l-p~~i-----~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p 652 (866)
.+.++++|++|++++|.++.. +..+ ..+.+|++|++++|.+.. ++..+..+++|++|++++|......+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 677777888888887776521 1111 224567788887775543 45556667788888887776432211
Q ss_pred CCCC-----CCCCCceecceeecCCc----chhHhhccccCCCeEEEEcccchhH--HHHHHhh-cCCCCCcEEEeeecc
Q 038220 653 PADA-----SLPNLQTLLGICICETS----CVEQGLDKLLNLRELGLHGDLILHE--EALCKWI-YNLKGLQCLKMQSRI 720 (866)
Q Consensus 653 ~~~~-----~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~--~~l~~~l-~~~~~L~~L~l~~~~ 720 (866)
..+. .+++|++|++.++.... .++..+..+++|++|++++|..... ..+...+ ..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 1111 24577777777764433 2455566777888888877764321 2233333 246777788777765
Q ss_pred ccccc---cCCccCCCCCceEEEEEeecCCCCCccccCC-----CCCCCeeEEeccccCCCe---EEECCCCCccccEEE
Q 038220 721 TYTVD---LSDVQNFPPNLTELSLQFCFLTEDPLKELEK-----LPNLRVLKLKQSSYLGKE---MVSSSGGFSQLQFLK 789 (866)
Q Consensus 721 ~~~~~---l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~ 789 (866)
+.... ++..+..+++|++|+|++|.+....+..+.. .++|+.|+|++|.+.+.. ++..+..+++|++|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 43221 3444445677777777777665433333322 257777777777665421 222334567788888
Q ss_pred eecCCCCcceEEccC-----cccccceeeEeecccCC----ccCCCccCCCCCCEEEEeCCCH
Q 038220 790 LSNLCYLERWRIEEG-----AMCNLRRLEIIECMRLK----IVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 790 l~~~~~l~~~~~~~~-----~~p~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
+++|......+.... .+++|+.|++++|.... .+|..+..+++|++|++++|++
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 887754322111111 25688888888875432 5666677788888888888774
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.3e-18 Score=179.28 Aligned_cols=220 Identities=19% Similarity=0.097 Sum_probs=133.4
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccc-cccccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 646 (866)
++++.+++.+..+|..+ .++|++|++++|.++.+| ..+.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56677777777777543 357777788777777666 3567777777777777766665 5566777777777777765
Q ss_pred ccccC-CCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccc
Q 038220 647 EMVVN-PPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVD 725 (866)
Q Consensus 647 ~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 725 (866)
....+ |..+.. +++|+.|++++|.. ...
T Consensus 92 ~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l---------------------------~~~ 120 (285)
T 1ozn_A 92 QLRSVDPATFHG------------------------LGRLHTLHLDRCGL---------------------------QEL 120 (285)
T ss_dssp TCCCCCTTTTTT------------------------CTTCCEEECTTSCC---------------------------CCC
T ss_pred CccccCHHHhcC------------------------CcCCCEEECCCCcC---------------------------CEE
Confidence 22222 333333 44444444444332 111
Q ss_pred cCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEE-CCCCCccccEEEeecCCCCcceEEccC
Q 038220 726 LSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVS-SSGGFSQLQFLKLSNLCYLERWRIEEG 804 (866)
Q Consensus 726 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~ 804 (866)
.|..+..+++|++|+|++|.+.......++.+++|+.|+|++|.+. .++. .+.++++|+.|++++|......+..+.
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc--ccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 2333444556666666666665544445666777777777666654 2322 356677777777777654333344556
Q ss_pred cccccceeeEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 805 AMCNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 805 ~~p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.+++|+.|++++|......+..+..+++|+.|++++|++
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 677777777777754332223467777888888877764
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=4e-20 Score=196.42 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=39.6
Q ss_pred CCCCceEEEeeCCCCc-cccccc--cCCCCccEEecCCCcccccccccccc-----ccccEEeccCccccccCCCCCCCC
Q 038220 587 NLIHLRYLDLRKTWLK-MLPSSM--GNLFNLQSLDLSSTLVDPIPLVIWKM-----QQLKHVYFSEFREMVVNPPADASL 658 (866)
Q Consensus 587 ~l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~~~~l 658 (866)
++++|++|++++|.++ .+|..+ +.+++|++|++++|.+..+|..+..+ ++|++|++++|......|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555555554 344443 45555555555555444444444444 455555555554442223444444
Q ss_pred CCCceecceee
Q 038220 659 PNLQTLLGICI 669 (866)
Q Consensus 659 ~~L~~L~~~~~ 669 (866)
++|++|++.++
T Consensus 173 ~~L~~L~Ls~N 183 (312)
T 1wwl_A 173 PALSTLDLSDN 183 (312)
T ss_dssp SSCCEEECCSC
T ss_pred CCCCEEECCCC
Confidence 44444444444
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2.4e-19 Score=202.15 Aligned_cols=240 Identities=14% Similarity=0.062 Sum_probs=182.9
Q ss_pred cCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 563 EEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
..++.|++|+|++|.+..++ ..++++++|++|+|++|.++.+++ ++.+++|++|++++|.+..+|. .++|++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 44558899999999887664 578889999999999998887665 8888999999999988777764 37899999
Q ss_pred ccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhc-CCCCCcEEEeeecc
Q 038220 642 FSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIY-NLKGLQCLKMQSRI 720 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~ 720 (866)
+++|......+ ..+++|++|++.++......+..++.+++|+.|++++|.+... .+..+. .+++|+.|++++|.
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--NFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE--EGGGGGGGTTTCCEEECTTSC
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc--ChHHHhhhCCcccEEecCCCc
Confidence 99887763333 2467888898888866665565578888999999988875321 233343 67899999999887
Q ss_pred ccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCC-cce
Q 038220 721 TYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL-ERW 799 (866)
Q Consensus 721 ~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~ 799 (866)
+.. +|.. ..+++|+.|+|++|.++..+ +.++.+++|+.|+|++|.+. .++..+..+++|+.|++++|+.. ..+
T Consensus 181 l~~--~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYD--VKGQ-VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCE--EECC-CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccc--cccc-ccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCCCCcCcch
Confidence 532 2332 24789999999999987644 45888999999999999887 46667788999999999998876 344
Q ss_pred EEccCcccccceeeEeecc
Q 038220 800 RIEEGAMCNLRRLEIIECM 818 (866)
Q Consensus 800 ~~~~~~~p~L~~L~l~~c~ 818 (866)
+.....+++|+.|.+..+.
T Consensus 255 ~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcEEeccccc
Confidence 4556778889888886443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=4.4e-18 Score=195.64 Aligned_cols=241 Identities=16% Similarity=0.054 Sum_probs=190.3
Q ss_pred CCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCC
Q 038220 544 SRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSST 622 (866)
Q Consensus 544 ~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 622 (866)
++|+.|.+.++. ..++. .+++|++|+|++|.+..+|. .+++|++|++++|.++.+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 789999999872 23333 57889999999999998887 68899999999999999987 6789999999999
Q ss_pred ccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHH
Q 038220 623 LVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALC 702 (866)
Q Consensus 623 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~ 702 (866)
.+..+|.. +++|++|++++|... .+|. .+++|+.|++.++... .++ ..+++|+.|++++|.... ++
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~---l~ 197 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS---LP 197 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC---CC
T ss_pred CCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC---CC
Confidence 99999874 489999999999776 5665 3567888888877433 344 456899999999987532 11
Q ss_pred HhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCC
Q 038220 703 KWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGF 782 (866)
Q Consensus 703 ~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 782 (866)
..+++|+.|++++|.+. .+|. .+++|+.|+|++|.++..+ ..+++|+.|+|++|.+.. ++. .+
T Consensus 198 ---~~~~~L~~L~L~~N~l~--~l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~ 260 (622)
T 3g06_A 198 ---TLPSELYKLWAYNNRLT--SLPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LP 260 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS--SCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CC
T ss_pred ---CccchhhEEECcCCccc--ccCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---cc
Confidence 23578999999987642 4443 3578999999999887532 567899999999998874 333 67
Q ss_pred ccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccCC
Q 038220 783 SQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVPS 825 (866)
Q Consensus 783 ~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp~ 825 (866)
++|+.|+|++|.. ..+|..+..+++|+.|+|++|+.....|.
T Consensus 261 ~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 261 SGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 8999999999864 47777788999999999999986654444
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.3e-17 Score=186.14 Aligned_cols=284 Identities=16% Similarity=0.120 Sum_probs=145.4
Q ss_pred CCceEEEEecCCCcCCCCC-CCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCc
Q 038220 525 AKARRLAIHFGIPSQTRKS-SRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLK 602 (866)
Q Consensus 525 ~~~r~l~i~~~~~~~~~~~-~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~ 602 (866)
..++.+.+..+....+... ++|++|.+.++ -..++ .+..++.|++|++++|.+..+|..+ .+|++|++++|.++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE 186 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCS
T ss_pred CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCC
Confidence 4455665555443333222 46777777665 12233 3666677777777777666665433 36667777766666
Q ss_pred cccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccc
Q 038220 603 MLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKL 682 (866)
Q Consensus 603 ~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l 682 (866)
.+| .++++++|++|++++|.+..+|... .+|++|++++|... .+| .++.+++|++|++.++... .++. .+
T Consensus 187 ~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~---~~ 256 (454)
T 1jl5_A 187 ELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD---LP 256 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS---CC
T ss_pred cCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc---cc
Confidence 666 4666666666666666555555322 35666666666554 455 3566666666666555322 1221 12
Q ss_pred cCCCeEEEEcccchhHHHHH-------------Hhhc-CCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCC
Q 038220 683 LNLRELGLHGDLILHEEALC-------------KWIY-NLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTE 748 (866)
Q Consensus 683 ~~L~~L~l~~~~~~~~~~l~-------------~~l~-~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 748 (866)
++|+.|++++|........+ ..+. ..++|+.|++++|.+. .++ ..+++|+.|++++|.+.+
T Consensus 257 ~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~--~i~---~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 257 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR--SLC---DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS--EEC---CCCTTCCEEECCSSCCSC
T ss_pred cccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCC--ccc---CCcCcCCEEECCCCcccc
Confidence 34555555444321100000 0000 1135555555554422 122 223689999999998875
Q ss_pred CCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCc--ceEEccCcc-------------cccceee
Q 038220 749 DPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLE--RWRIEEGAM-------------CNLRRLE 813 (866)
Q Consensus 749 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~-------------p~L~~L~ 813 (866)
.+. .+++|+.|++++|.+.. ++. .+++|++|++++|+... .+|...+.+ ++|+.|+
T Consensus 332 -lp~---~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 332 -LPA---LPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred -ccc---cCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 222 26899999999998773 333 57899999999987765 555555555 8999999
Q ss_pred EeecccCC--ccCCCccCCCCCCEEEEeCCC
Q 038220 814 IIECMRLK--IVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 814 l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+++|+... .+|. +|+.|.+.+|.
T Consensus 403 ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 403 VETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp -------------------------------
T ss_pred CCCCcCCccccchh------hHhheeCcCcc
Confidence 99998654 5554 35566666655
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=6.1e-20 Score=195.50 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=194.0
Q ss_pred CCCCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEe
Q 038220 541 RKSSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLD 618 (866)
Q Consensus 541 ~~~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 618 (866)
..+++++.|.+.++ ....+..+..++.|++|++++|.+...+. +..+++|++|++++|.++.+|. +++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 34668999999887 44555678999999999999999876665 8999999999999999988774 48999999
Q ss_pred cCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhh-ccccCCCeEEEEcccchh
Q 038220 619 LSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGL-DKLLNLRELGLHGDLILH 697 (866)
Q Consensus 619 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 697 (866)
+++|.+..++.. .+++|++|++++|......+..++.+++|++|++.++......+..+ ..+++|+.|++++|....
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999988888753 47899999999998875556678889999999999886555444434 478999999999997643
Q ss_pred HHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEE
Q 038220 698 EEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVS 777 (866)
Q Consensus 698 ~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 777 (866)
. .....+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.. .+..+..+++|+.|+|++|.+....++.
T Consensus 184 ~----~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 184 V----KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp E----ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred c----ccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 3 22345889999999998753 455556778999999999999874 4566889999999999999887335555
Q ss_pred CCCCCccccEEEeecCCCCc
Q 038220 778 SSGGFSQLQFLKLSNLCYLE 797 (866)
Q Consensus 778 ~~~~~~~L~~L~l~~~~~l~ 797 (866)
.+..+++|+.|++.++..+.
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccceEEECCCchhcc
Confidence 66789999999998665544
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=5.9e-21 Score=215.53 Aligned_cols=319 Identities=17% Similarity=0.092 Sum_probs=211.9
Q ss_pred CceEEEEecCCCc-----C-CCCCCCceEEEecCCC------CCccccccCCCeeEEEEecCCcccc-Ccccc-cCCC--
Q 038220 526 KARRLAIHFGIPS-----Q-TRKSSRVRSLLFFDIS------EPVGSILEEYKLLQVLDLEGVYMAL-IDSSI-GNLI-- 589 (866)
Q Consensus 526 ~~r~l~i~~~~~~-----~-~~~~~~lr~L~~~~~~------~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~i-~~l~-- 589 (866)
.++++.+...... . +..++++++|.+.++. ..++..+..++.|++|++++|.+.. .+..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666554421 1 4467788999988872 1334567778889999999988753 22222 2344
Q ss_pred --CceEEEeeCCCCc-----cccccccCCCCccEEecCCCccccc-cccc-----cccccccEEeccCcccccc----CC
Q 038220 590 --HLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLVDPI-PLVI-----WKMQQLKHVYFSEFREMVV----NP 652 (866)
Q Consensus 590 --~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~l-p~~i-----~~l~~L~~L~l~~~~~~~~----~p 652 (866)
+|++|++++|.++ .+|..+.++++|++|++++|.+... +..+ ...++|++|++++|..... ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 6999999999887 5678888899999999998865432 1122 2356799999998866532 24
Q ss_pred CCCCCCCCCceecceeecCCcchhHhhc-----cccCCCeEEEEcccchh--HHHHHHhhcCCCCCcEEEeeeccccccc
Q 038220 653 PADASLPNLQTLLGICICETSCVEQGLD-----KLLNLRELGLHGDLILH--EEALCKWIYNLKGLQCLKMQSRITYTVD 725 (866)
Q Consensus 653 ~~~~~l~~L~~L~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~--~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 725 (866)
..+..+++|++|++.++.........+. .+++|+.|++++|.... ...++..+..+++|++|++++|.+....
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 4456678899998888754332222232 35689999999887543 3356777888899999999987643221
Q ss_pred c----CCccCCCCCceEEEEEeecCCCC----CccccCCCCCCCeeEEeccccCCCe---EEEC-CCCCccccEEEeecC
Q 038220 726 L----SDVQNFPPNLTELSLQFCFLTED----PLKELEKLPNLRVLKLKQSSYLGKE---MVSS-SGGFSQLQFLKLSNL 793 (866)
Q Consensus 726 l----~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~-~~~~~~L~~L~l~~~ 793 (866)
+ +.+...+++|++|+|++|.++.. .+..+..+++|+.|+|++|.+.+.. +... ....++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 1 22333467899999999988654 3445667899999999888764311 1111 123468999999998
Q ss_pred CCCcc----eEEccCcccccceeeEeecccCCccCC----CccC-CCCCCEEEEeCCCHH
Q 038220 794 CYLER----WRIEEGAMCNLRRLEIIECMRLKIVPS----GLWP-LTTLSNLKLGYMPFD 844 (866)
Q Consensus 794 ~~l~~----~~~~~~~~p~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~~~~~ 844 (866)
..... ++.....+++|+.|++++|......+. .+.. +++|+.|++++|...
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 75443 233344679999999999964332222 2222 679999999999854
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=2.4e-18 Score=182.66 Aligned_cols=250 Identities=17% Similarity=0.116 Sum_probs=187.1
Q ss_pred cccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCc--ccccccc-------CCCCccEEecCCCccc-ccccc
Q 038220 561 ILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLK--MLPSSMG-------NLFNLQSLDLSSTLVD-PIPLV 630 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~--~lp~~i~-------~l~~L~~L~l~~~~~~-~lp~~ 630 (866)
.+...+.|+.|+++++.+ .+|..+... |++|++++|.+. .+|..+. ++.+|++|++++|.+. .+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345566788888888888 778766654 888888888875 4666665 7889999999998766 67776
Q ss_pred c--cccccccEEeccCccccccCCCCCCCC-----CCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHH
Q 038220 631 I--WKMQQLKHVYFSEFREMVVNPPADASL-----PNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCK 703 (866)
Q Consensus 631 i--~~l~~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~ 703 (866)
+ ..+++|++|++++|... ..|..++.+ ++|++|++.++......+..++.+++|+.|++++|.......++.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 88999999999998876 346666665 889999998886655555568889999999999887544444555
Q ss_pred hh--cCCCCCcEEEeeeccccc-cccC-CccCCCCCceEEEEEeecCCCCC-ccccCCCCCCCeeEEeccccCCCeEEEC
Q 038220 704 WI--YNLKGLQCLKMQSRITYT-VDLS-DVQNFPPNLTELSLQFCFLTEDP-LKELEKLPNLRVLKLKQSSYLGKEMVSS 778 (866)
Q Consensus 704 ~l--~~~~~L~~L~l~~~~~~~-~~l~-~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 778 (866)
.+ ..+++|+.|++++|.+.. ..++ ..+..+++|+.|+|++|.+.... ...+..+++|+.|+|++|.+. .++..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhh
Confidence 55 788999999998876431 1111 23345689999999999887755 345667899999999888876 44444
Q ss_pred CCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccC
Q 038220 779 SGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRL 820 (866)
Q Consensus 779 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l 820 (866)
+. ++|++|++++|.. ..++. ...+++|+.|++++|+..
T Consensus 272 ~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCCCC
Confidence 33 8999999998765 44444 778999999999998743
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=2e-19 Score=193.71 Aligned_cols=254 Identities=19% Similarity=0.156 Sum_probs=149.3
Q ss_pred eEEEEecCCccccCcccccCC--CCceEEEeeCCCCccccccccCCCCccEEecCCCcccc--ccccccccccccEEecc
Q 038220 568 LQVLDLEGVYMALIDSSIGNL--IHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDP--IPLVIWKMQQLKHVYFS 643 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l--~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~ 643 (866)
++.++++++.+. |..+..+ .++++|++++|.+...+..+.++.+|++|++++|.+.. +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 344455544432 2333334 45555555555555444444555555555555553332 44445555555555555
Q ss_pred CccccccCCCCCCCCCCCceecceeec-CCc-chhHhhccccCCCeEEEEcc-cchhHHHHHHhhcCCC-CCcEEEeeec
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICIC-ETS-CVEQGLDKLLNLRELGLHGD-LILHEEALCKWIYNLK-GLQCLKMQSR 719 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~-~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~~l~~~~-~L~~L~l~~~ 719 (866)
+|......|..++.+++|++|++.++. ... .++..+..+++|++|++++| .. ....++..+..++ +|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF-TEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-CHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-ChHHHHHHHHhcccCCCEEEeCCC
Confidence 554433344444555556666555552 222 34555677788888888877 43 3344566677777 8888888876
Q ss_pred c--ccccccCCccCCCCCceEEEEEeec-CCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCC
Q 038220 720 I--TYTVDLSDVQNFPPNLTELSLQFCF-LTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYL 796 (866)
Q Consensus 720 ~--~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 796 (866)
. +....+|..+..+++|+.|+|++|. ++...+..++.+++|+.|+|++|..........+..+++|+.|++++| +
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i 283 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--V 283 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--S
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--c
Confidence 3 3224455556667888888888887 666666778888999999998774221121224567889999999887 2
Q ss_pred cceEEccCcc-cccceeeEeecccCCccCCCcc
Q 038220 797 ERWRIEEGAM-CNLRRLEIIECMRLKIVPSGLW 828 (866)
Q Consensus 797 ~~~~~~~~~~-p~L~~L~l~~c~~l~~lp~~l~ 828 (866)
... ....+ .+|..|++++|......|..+.
T Consensus 284 ~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 284 PDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 211 11123 3477777877765555665444
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=3.7e-19 Score=207.64 Aligned_cols=301 Identities=12% Similarity=0.053 Sum_probs=187.9
Q ss_pred CCCCceEEEecCCC------CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCC----ccccccccCC
Q 038220 542 KSSRVRSLLFFDIS------EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWL----KMLPSSMGNL 611 (866)
Q Consensus 542 ~~~~lr~L~~~~~~------~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i----~~lp~~i~~l 611 (866)
.+++|++|.+.++. ..++..+.+++.|+.|++++|.+..+|..+.++++|++|+++++.. ...+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 45667777665541 1223345566777777777777766676677777777777764321 2344556677
Q ss_pred CCccEEecCCCccccccccccccccccEEeccCccccccC-CCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEE
Q 038220 612 FNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVN-PPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGL 690 (866)
Q Consensus 612 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l 690 (866)
.+|+.|+++++....+|..+..+++|++|++++|...... +..+..+++|++|++..+.....++.....+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 7777777777666677777778888888888887633221 123467888888887743223344444566788888888
Q ss_pred Ec----------ccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEee----cCCCC-----Cc
Q 038220 691 HG----------DLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFC----FLTED-----PL 751 (866)
Q Consensus 691 ~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~----~l~~~-----~~ 751 (866)
.+ +.......+......+++|++|++.++.+....+......+++|+.|+++++ .+++. ..
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 84 4433444555555667888888886655433322222333678888888743 34332 11
Q ss_pred cccCCCCCCCeeEEeccc--cCCCeEEECCCCCccccEEEeecCCCCc-ceEEccCcccccceeeEeecccCC-ccCCCc
Q 038220 752 KELEKLPNLRVLKLKQSS--YLGKEMVSSSGGFSQLQFLKLSNLCYLE-RWRIEEGAMCNLRRLEIIECMRLK-IVPSGL 827 (866)
Q Consensus 752 ~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~p~L~~L~l~~c~~l~-~lp~~l 827 (866)
..+..+++|+.|+|+.|. +.+..+......+++|+.|++++|.... .++.....+++|+.|+|++|+... .++..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 224567888888886533 3321111112347888888888876433 223334577889999998888322 244445
Q ss_pred cCCCCCCEEEEeCCC
Q 038220 828 WPLTTLSNLKLGYMP 842 (866)
Q Consensus 828 ~~l~~L~~L~l~~~~ 842 (866)
..+++|+.|++++|+
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 678888899998887
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=5.4e-18 Score=191.16 Aligned_cols=217 Identities=15% Similarity=0.100 Sum_probs=149.8
Q ss_pred CCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceec
Q 038220 587 NLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLL 665 (866)
Q Consensus 587 ~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 665 (866)
.+++|++|+|++|.++.+| ..++.+++|++|+|++|.+...+. +..+++|++|++++|... .+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCCC----CCCcCEEE
Confidence 3448999999999998775 689999999999999998877665 889999999999998765 3332 26777777
Q ss_pred ceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeec
Q 038220 666 GICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCF 745 (866)
Q Consensus 666 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 745 (866)
+.++......+ ..+ ++|+.|++++|.+. ...|..+..+++|+.|+|++|.
T Consensus 106 L~~N~l~~~~~---~~l--------------------------~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 106 AANNNISRVSC---SRG--------------------------QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CCSSCCCCEEE---CCC--------------------------SSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSC
T ss_pred CcCCcCCCCCc---ccc--------------------------CCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCC
Confidence 66663322211 123 44555555554431 2233344556777888887777
Q ss_pred CCCCCccccC-CCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeecccCCccC
Q 038220 746 LTEDPLKELE-KLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMRLKIVP 824 (866)
Q Consensus 746 l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~l~~lp 824 (866)
++...+..+. .+++|+.|+|++|.+.+ + .....+++|+.|+|++|.. ..++..+..+++|+.|++++|. +..+|
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 230 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYD--V-KGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIE 230 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCE--E-ECCCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEEC
T ss_pred CCCcChHHHhhhCCcccEEecCCCcccc--c-cccccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCc-Ccccc
Confidence 7665555554 67888888887777653 2 2344577888888887653 4455556677888888888775 44577
Q ss_pred CCccCCCCCCEEEEeCCCHH
Q 038220 825 SGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 825 ~~l~~l~~L~~L~l~~~~~~ 844 (866)
..+..+++|+.|++++|++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBC
T ss_pred hhhccCCCCCEEEcCCCCCc
Confidence 77777888888888887754
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=6e-19 Score=205.85 Aligned_cols=299 Identities=14% Similarity=0.017 Sum_probs=199.9
Q ss_pred CCCCceEEEecCCC--CC----ccccccCCCeeEEEEecCCccc-----cCcccccCCCCceEEEeeCCCCccccccccC
Q 038220 542 KSSRVRSLLFFDIS--EP----VGSILEEYKLLQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTWLKMLPSSMGN 610 (866)
Q Consensus 542 ~~~~lr~L~~~~~~--~~----~~~~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 610 (866)
.+++|+.|.+.++. .. ++..+..++.|+.|+++++.+. .++..+.++++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 56777777777661 11 3334566777888888777653 3444556677888888888777777777777
Q ss_pred CCCccEEecCCC-c---cccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCc-chhHhhccccCC
Q 038220 611 LFNLQSLDLSST-L---VDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETS-CVEQGLDKLLNL 685 (866)
Q Consensus 611 l~~L~~L~l~~~-~---~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L 685 (866)
+++|++|+++.+ . ....+..+..+++|++|.+.++... .+|..+..+++|++|++.++.... .+...+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 888888888643 1 1344456677778888877765333 566666778888888888775332 233446788899
Q ss_pred CeEEEEcccchhHHHHHHhhcCCCCCcEEEeee-----------ccccccccCCccCCCCCceEEEEEeecCCCCCcccc
Q 038220 686 RELGLHGDLILHEEALCKWIYNLKGLQCLKMQS-----------RITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKEL 754 (866)
Q Consensus 686 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~-----------~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l 754 (866)
+.|++.++. ....+......+++|++|++.. +.+....++.....+++|++|+++.+.+++..+..+
T Consensus 321 ~~L~L~~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 321 EVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CEEeccCcc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 999888432 3445555566788899999983 333222333334457899999998878776666666
Q ss_pred CC-CCCCCeeEEec----cccCCC----eEEECCCCCccccEEEeecCCC-Cc-ceEEc-cCcccccceeeEeecccCC-
Q 038220 755 EK-LPNLRVLKLKQ----SSYLGK----EMVSSSGGFSQLQFLKLSNLCY-LE-RWRIE-EGAMCNLRRLEIIECMRLK- 821 (866)
Q Consensus 755 ~~-l~~L~~L~L~~----~~~~~~----~~~~~~~~~~~L~~L~l~~~~~-l~-~~~~~-~~~~p~L~~L~l~~c~~l~- 821 (866)
+. +++|+.|+|++ +.+++. .+.....++++|++|++++|.. +. ..... ...+|+|+.|++++|....
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 65 89999999973 344431 1112245689999999976542 22 11111 2348999999999887433
Q ss_pred ccCCCccCCCCCCEEEEeCCCH
Q 038220 822 IVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 822 ~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.++..+..+++|+.|+|++|++
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHHhcCcccCeeeccCCCC
Confidence 3455567899999999999984
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=6.6e-19 Score=189.68 Aligned_cols=247 Identities=21% Similarity=0.149 Sum_probs=190.3
Q ss_pred CceEEEeeCCCCccccccccCC--CCccEEecCCCccccccccccccccccEEeccCcccccc-CCCCCCCCCCCceecc
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNL--FNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVV-NPPADASLPNLQTLLG 666 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l--~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~~ 666 (866)
.++.++++++.+. |..+..+ .+++.|+++++.+...+..+..+++|++|++++|..... +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4889999998876 5666777 899999999998887777788999999999999986533 6667889999999999
Q ss_pred eeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec-cccccccCCccCCCC-CceEEEEEee
Q 038220 667 ICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR-ITYTVDLSDVQNFPP-NLTELSLQFC 744 (866)
Q Consensus 667 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~~l~~~~~~~~-~L~~L~L~~~ 744 (866)
.++......+..++.+++|++|++++|.......++..+..+++|++|++++| .+....++..+..++ +|++|+|++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 98866666666689999999999999954345567777888999999999998 654444566667778 9999999999
Q ss_pred --cCCC-CCccccCCCCCCCeeEEeccc-cCCCeEEECCCCCccccEEEeecCCCCcc-eEEccCcccccceeeEeeccc
Q 038220 745 --FLTE-DPLKELEKLPNLRVLKLKQSS-YLGKEMVSSSGGFSQLQFLKLSNLCYLER-WRIEEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 745 --~l~~-~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~p~L~~L~l~~c~~ 819 (866)
.++. ..+..++.+++|+.|+|++|. +++ ..+..+..+++|++|++++|..+.. .....+.+|+|+.|++++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 4542 234456789999999999888 443 4444677889999999999964432 1224567999999999999
Q ss_pred CCccCCCccCC-CCCCEEEEeCCCH
Q 038220 820 LKIVPSGLWPL-TTLSNLKLGYMPF 843 (866)
Q Consensus 820 l~~lp~~l~~l-~~L~~L~l~~~~~ 843 (866)
+. ..++..+ .+|+.|++++|.+
T Consensus 283 i~--~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 283 VP--DGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp SC--TTCHHHHHHHSTTSEESCCCS
T ss_pred cC--HHHHHHHHhhCcceEEecccC
Confidence 22 1233333 3366677887773
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=4.8e-17 Score=168.91 Aligned_cols=209 Identities=21% Similarity=0.189 Sum_probs=118.3
Q ss_pred cCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccc-ccccccccEEe
Q 038220 563 EEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVY 641 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 641 (866)
..++.|+.|+++++.+..++ .+..+++|++|++++|.++.++ .++++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34455666666666555443 3555666666666666655543 455566666666666655555433 35556666666
Q ss_pred ccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 642 FSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
+++|......+..++. +++|+.|++++|..
T Consensus 116 L~~n~l~~~~~~~~~~------------------------l~~L~~L~L~~n~l-------------------------- 145 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDK------------------------LTNLTYLNLAHNQL-------------------------- 145 (272)
T ss_dssp CTTSCCCCCCTTTTTT------------------------CTTCCEEECCSSCC--------------------------
T ss_pred CCCCcCCccCHHHhcc------------------------CCCCCEEECCCCcc--------------------------
Confidence 6555444211222233 33333333333321
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEE
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRI 801 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 801 (866)
....+..+..+++|+.|++++|.++...+..++.+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|+..
T Consensus 146 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~----- 218 (272)
T 3rfs_A 146 -QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD----- 218 (272)
T ss_dssp -CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC-----
T ss_pred -CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc-----
Confidence 11122233445666667777666665555556777777777777776664 22233566777777777777532
Q ss_pred ccCcccccceeeEeecccCCccCCCccCCCC
Q 038220 802 EEGAMCNLRRLEIIECMRLKIVPSGLWPLTT 832 (866)
Q Consensus 802 ~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~~ 832 (866)
+.+|+|+.|.+..|.....+|..+..++.
T Consensus 219 --~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 219 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 45777888888877766677776665544
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=7.5e-17 Score=168.06 Aligned_cols=79 Identities=25% Similarity=0.209 Sum_probs=39.1
Q ss_pred CceEEEeeCCCCccccc-cccCCCCccEEecCCCccccccc-cccccccccEEeccCccccccCCCCCCCCCCCceecce
Q 038220 590 HLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGI 667 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~ 667 (866)
+|++|++++|.++.+|. .+.++++|++|++++|.+..++. .+..+++|++|++++|......+..+..+++|++|++.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554443 45555555555555554444443 34555555555555554442233334444444444443
Q ss_pred e
Q 038220 668 C 668 (866)
Q Consensus 668 ~ 668 (866)
+
T Consensus 109 ~ 109 (276)
T 2z62_A 109 E 109 (276)
T ss_dssp T
T ss_pred C
Confidence 3
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.2e-16 Score=163.82 Aligned_cols=198 Identities=22% Similarity=0.201 Sum_probs=114.8
Q ss_pred eEEEEecCCccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCccccccccc-cccccccEEeccCc
Q 038220 568 LQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPLVI-WKMQQLKHVYFSEF 645 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~~ 645 (866)
++.++++++.+..+|..+. .+|++|++++|.++.+|. .+.++.+|++|++++|.+..+|..+ ..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4567777777777776544 467777777777776664 5777777777777777776776553 56777777777777
Q ss_pred cccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccc
Q 038220 646 REMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVD 725 (866)
Q Consensus 646 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~ 725 (866)
......+..+..+++|++|++.++......+..++.+++|+.|++++|.. . ..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------------------------~-~~ 148 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL--------------------------Q-SL 148 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--------------------------C-CC
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC--------------------------C-cc
Confidence 65522223345566666666555533222222233444444444443321 1 11
Q ss_pred cCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 726 LSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 726 l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
.+..+..+++|+.|+|++|.+.......+..+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|+.
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCe
Confidence 12234445666666666666655544456666777777776666553 1112345566677777766653
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=8e-19 Score=192.75 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=55.3
Q ss_pred cccccCCCeeEEEEecCCcccc-----CcccccCCCCceEEEeeCCCCc----cccccc-------cCCCCccEEecCCC
Q 038220 559 GSILEEYKLLQVLDLEGVYMAL-----IDSSIGNLIHLRYLDLRKTWLK----MLPSSM-------GNLFNLQSLDLSST 622 (866)
Q Consensus 559 ~~~~~~~~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~i~----~lp~~i-------~~l~~L~~L~l~~~ 622 (866)
...+..++.|+.|+|++|.+.. ++..+.++++|++|+|++|.+. .+|..+ .++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3445566677777777776542 3344566777777777776443 233333 56677777777777
Q ss_pred cccc-----ccccccccccccEEeccCccc
Q 038220 623 LVDP-----IPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 623 ~~~~-----lp~~i~~l~~L~~L~l~~~~~ 647 (866)
.+.. +|..+..+++|++|++++|..
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 5554 566666777777777776654
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=7.7e-17 Score=167.37 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCCCCceEEEecCCCCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEec
Q 038220 541 RKSSRVRSLLFFDISEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDL 619 (866)
Q Consensus 541 ~~~~~lr~L~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 619 (866)
..+++++.|.+.++.-.....+..++.|++|++++|.+..++ .+.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 457789999998873222345788999999999999998765 789999999999999999988764 689999999999
Q ss_pred CCCcccccccc-ccccccccEEeccCccccccCCC-CCCCCCCCceecceee
Q 038220 620 SSTLVDPIPLV-IWKMQQLKHVYFSEFREMVVNPP-ADASLPNLQTLLGICI 669 (866)
Q Consensus 620 ~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~ 669 (866)
++|.+..+|.. +..+++|++|++++|... .+|. .++.+++|+.|++.++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence 99988888765 689999999999999766 4443 3455666666655554
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=1e-18 Score=191.95 Aligned_cols=254 Identities=17% Similarity=0.039 Sum_probs=151.5
Q ss_pred eeEEEEecCCccccCcccccCCCCceEEEeeCCCCcc-----ccccccCCCCccEEecCCCccc----cccccc------
Q 038220 567 LLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKM-----LPSSMGNLFNLQSLDLSSTLVD----PIPLVI------ 631 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~----~lp~~i------ 631 (866)
.|+...++...+..++..+..+++|++|+|++|.++. ++..+.++++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444445555566777888888999999999998773 4556778899999999887444 334443
Q ss_pred -cccccccEEeccCccccc----cCCCCCCCCCCCceecceeecCCc----chhHhhccc---------cCCCeEEEEcc
Q 038220 632 -WKMQQLKHVYFSEFREMV----VNPPADASLPNLQTLLGICICETS----CVEQGLDKL---------LNLRELGLHGD 693 (866)
Q Consensus 632 -~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~~~~~~~~~----~~~~~l~~l---------~~L~~L~l~~~ 693 (866)
..+++|++|++++|.... .+|..+..+++|++|++.+|.... .++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 678888888888887653 244455666777777776664421 122223333 67777777766
Q ss_pred cch--hHHHHHHhhcCCCCCcEEEeeecccccc----ccCCccCCCCCceEEEEEeecCC----CCCccccCCCCCCCee
Q 038220 694 LIL--HEEALCKWIYNLKGLQCLKMQSRITYTV----DLSDVQNFPPNLTELSLQFCFLT----EDPLKELEKLPNLRVL 763 (866)
Q Consensus 694 ~~~--~~~~l~~~l~~~~~L~~L~l~~~~~~~~----~l~~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~l~~L~~L 763 (866)
... ....+...+..+++|++|++++|.+... ..|..+..+++|+.|+|++|.++ ...+..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 642 3334445566666777777766643211 12224455566777777666654 2233445666666666
Q ss_pred EEeccccCCCe---EEECC--CCCccccEEEeecCCCCc----ceEEcc-CcccccceeeEeecccC
Q 038220 764 KLKQSSYLGKE---MVSSS--GGFSQLQFLKLSNLCYLE----RWRIEE-GAMCNLRRLEIIECMRL 820 (866)
Q Consensus 764 ~L~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~----~~~~~~-~~~p~L~~L~l~~c~~l 820 (866)
+|++|.+.+.. ++..+ +.+++|++|+|++|.... .++... ..+|+|+.|++++|+..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66666554310 11222 336666666666665433 133322 34566666666666543
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=9.9e-17 Score=169.62 Aligned_cols=193 Identities=23% Similarity=0.249 Sum_probs=109.4
Q ss_pred CCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEecc
Q 038220 564 EYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFS 643 (866)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 643 (866)
.++.|+.|+++++.+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 3455666666666665555 45566666666666666666655 666666666666666555554 46666666666666
Q ss_pred CccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc
Q 038220 644 EFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT 723 (866)
Q Consensus 644 ~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 723 (866)
+|... .++. +..+++|+.|++.++... .++. ++.+++|+.|++++|...... . +..+++|+.|++++|.+.
T Consensus 116 ~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~- 186 (308)
T 1h6u_A 116 STQIT-DVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLT---P-LANLSKLTTLKADDNKIS- 186 (308)
T ss_dssp TSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCC-
T ss_pred CCCCC-Cchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCCh---h-hcCCCCCCEEECCCCccC-
Confidence 66544 3332 555666666665555222 2222 555666666666666542211 1 455566666666655432
Q ss_pred cccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCC
Q 038220 724 VDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLG 772 (866)
Q Consensus 724 ~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 772 (866)
.++. +..+++|+.|+|++|.+.... .+..+++|+.|+|++|.+.+
T Consensus 187 -~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 -DISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -CCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -cChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 1222 344566666666666665433 35666667777776666543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2.4e-16 Score=164.92 Aligned_cols=201 Identities=21% Similarity=0.157 Sum_probs=109.0
Q ss_pred ccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccccccccccccccEE
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHV 640 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 640 (866)
+.+++.++.++++++.+..+|..+. +++++|++++|.++.++ ..+..+.+|++|++++|.+..+|.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4455566666666666666665543 46666666666666543 4566666666666666666666543 566666666
Q ss_pred eccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeecc
Q 038220 641 YFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRI 720 (866)
Q Consensus 641 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 720 (866)
++++|... .+|..+..+++|++|++.++......+..+..+++|+.|++++|...
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~------------------------ 137 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK------------------------ 137 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC------------------------
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC------------------------
Confidence 66666554 55555566666666665555333222222444445555554444321
Q ss_pred ccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 721 TYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 721 ~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
...+..+..+++|+.|+|++|.++..+...+..+++|+.|+|++|.+. .++..+..+++|+.|.|++|+.
T Consensus 138 ---~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 138 ---TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ---CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred ---ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCc
Confidence 111222333455555555555554433334455556666666555554 3344444555566666655543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.7e-16 Score=165.28 Aligned_cols=204 Identities=18% Similarity=0.112 Sum_probs=136.1
Q ss_pred CeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcccccc-ccccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l 642 (866)
+.|++|++++|.+..++. .+.++++|++|++++|.++.+|. .+.++.+|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357888888888876654 67888888888888888887764 6788888888888888777665 45778888888888
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCc-chhHhhccccCCCeEEEEcccchhHH-HHHHhhcCCCCCc-EEEeeec
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETS-CVEQGLDKLLNLRELGLHGDLILHEE-ALCKWIYNLKGLQ-CLKMQSR 719 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~-~L~l~~~ 719 (866)
++|......+..++.+++|++|++.++.... .++..++.+++|+.|++++|...... .....+..++.|. +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8887764444467788888888887775443 34555778888888888877643210 0011222333333 6666665
Q ss_pred cccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccC
Q 038220 720 ITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYL 771 (866)
Q Consensus 720 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 771 (866)
.+. .++.......+|+.|+|++|.++..+...++.+++|+.|+|++|.+.
T Consensus 188 ~l~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMN--FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCC--EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccc--ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 532 22222222346777777777766555555666777777777666554
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=3.2e-18 Score=199.78 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=54.9
Q ss_pred cCCCCCCCeeEEeccccCCCeEEECCC-CCccccEEEeecCCCCcceEEcc-CcccccceeeEeecccCCc-cCCCccCC
Q 038220 754 LEKLPNLRVLKLKQSSYLGKEMVSSSG-GFSQLQFLKLSNLCYLERWRIEE-GAMCNLRRLEIIECMRLKI-VPSGLWPL 830 (866)
Q Consensus 754 l~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~-~~~p~L~~L~l~~c~~l~~-lp~~l~~l 830 (866)
+..+++|+.|+|++ .+.+..+ ..++ .+++|+.|+|++|.......... ..+|+|+.|+|++|+.... ++..+..+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 34456666666643 2222111 1112 37788888888877533222112 4689999999999987332 22345668
Q ss_pred CCCCEEEEeCCCH
Q 038220 831 TTLSNLKLGYMPF 843 (866)
Q Consensus 831 ~~L~~L~l~~~~~ 843 (866)
++|+.|++++|+.
T Consensus 506 ~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 506 ETMRSLWMSSCSV 518 (594)
T ss_dssp GGSSEEEEESSCC
T ss_pred CCCCEEeeeCCCC
Confidence 9999999999985
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=2.4e-18 Score=200.89 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCCCCceEEEEEeecCCCCCccccCC-CCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceE-EccCcccc
Q 038220 731 NFPPNLTELSLQFCFLTEDPLKELEK-LPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWR-IEEGAMCN 808 (866)
Q Consensus 731 ~~~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~ 808 (866)
..+++|+.|+|++ .++...+..++. +++|+.|+|++|.+++..+.....++++|++|+|++|+...... .....+|+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666654 344333444444 67788888877766542222212457778888888777632211 12345778
Q ss_pred cceeeEeecccCCccCCCc-cCCCCCCEEEEeCC
Q 038220 809 LRRLEIIECMRLKIVPSGL-WPLTTLSNLKLGYM 841 (866)
Q Consensus 809 L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~ 841 (866)
|+.|++++|+....-...+ ..+|+|+...+..+
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 8888888876522111112 34566665555543
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.6e-16 Score=160.70 Aligned_cols=173 Identities=23% Similarity=0.251 Sum_probs=99.7
Q ss_pred CceEEEeeCCCCccccccccCCCCccEEecCCCccccccc-cccccccccEEeccCccccccCCCC-CCCCCCCceecce
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFREMVVNPPA-DASLPNLQTLLGI 667 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~ 667 (866)
.+++++++++.++.+|..+. .+|++|++++|.+..+|. .+..+++|++|++++|... .+|.. +..+++|++|++.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 57899999999999998664 689999999998888875 6889999999999988766 45443 3566666666665
Q ss_pred eecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCC
Q 038220 668 CICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLT 747 (866)
Q Consensus 668 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 747 (866)
++......+..+..+++| +.|++++|.+ ....+..+..+++|++|+|++|.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L--------------------------~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNL--------------------------AELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SSCCCCCCTTTTTTCSSC--------------------------CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHhHcccccCC--------------------------CEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCC
Confidence 553222221212333333 3333333221 1112223344555666666655554
Q ss_pred CCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecC
Q 038220 748 EDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNL 793 (866)
Q Consensus 748 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 793 (866)
......++.+++|+.|+|++|.+.. ..+..+.++++|++|++++|
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred ccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCC
Confidence 4443445555555555555554432 11112334444444444444
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.6e-16 Score=166.24 Aligned_cols=201 Identities=22% Similarity=0.197 Sum_probs=134.2
Q ss_pred ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccc-ccccccccccEEeccCccccccCCCCCCCCCCCce
Q 038220 585 IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQT 663 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 663 (866)
+.++++|+.++++++.++.+|..+. .+|++|++++|.+..++ ..+..+++|++|++++|... .++.. +.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~---- 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLP---- 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCT----
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCC----
Confidence 5677788888888888888887664 57888888888777664 56778888888888877654 22221 2333
Q ss_pred ecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEe
Q 038220 664 LLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQF 743 (866)
Q Consensus 664 L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~ 743 (866)
+|+.|++++|.. ..+|..+..+++|+.|+|++
T Consensus 78 --------------------~L~~L~Ls~N~l----------------------------~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 78 --------------------VLGTLDLSHNQL----------------------------QSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp --------------------TCCEEECCSSCC----------------------------SSCCCCTTTCTTCCEEECCS
T ss_pred --------------------cCCEEECCCCcC----------------------------CcCchhhccCCCCCEEECCC
Confidence 333333333321 12344444556677777777
Q ss_pred ecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEEc-cCcccccceeeEeecccCCc
Q 038220 744 CFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRIE-EGAMCNLRRLEIIECMRLKI 822 (866)
Q Consensus 744 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~l~~c~~l~~ 822 (866)
|.++...+..++.+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|.. ..++.. +..+++|+.|++++|. ++.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~ 186 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENS-LYT 186 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSC-CCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCc-CCc
Confidence 76665555567777777777777776653 2222345677788888877654 344432 3567888888888775 557
Q ss_pred cCCCccCCCCCCEEEEeCCCHH
Q 038220 823 VPSGLWPLTTLSNLKLGYMPFD 844 (866)
Q Consensus 823 lp~~l~~l~~L~~L~l~~~~~~ 844 (866)
+|.++..+++|+.|++++||+.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBC
T ss_pred cChhhcccccCCeEEeCCCCcc
Confidence 8888888888999999888754
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=4.4e-16 Score=164.66 Aligned_cols=193 Identities=22% Similarity=0.160 Sum_probs=142.6
Q ss_pred ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCcee
Q 038220 585 IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTL 664 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 664 (866)
..++++|++|++++|.++.+| .+..+++|++|++++|.+..++. +..+++|++|++++|... .++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEE
Confidence 456889999999999999988 68899999999999999999887 999999999999999865 444 68888899999
Q ss_pred cceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEee
Q 038220 665 LGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFC 744 (866)
Q Consensus 665 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 744 (866)
++.++... .++. +..+++|+.|++++|...... .+..+++|+.|++++|.+. .++. +..+++|+.|+|++|
T Consensus 113 ~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 113 DLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVS--DLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp ECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSS
T ss_pred ECCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCc----cccCCCCccEEEccCCcCC--CChh-hcCCCCCCEEECCCC
Confidence 88887443 3444 778888888888887653322 1566777777777776532 2232 455677777777777
Q ss_pred cCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 745 FLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 745 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
.+.... .+..+++|+.|+|++|.+.+.. .+..+++|+.|++++|+.
T Consensus 184 ~l~~~~--~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 184 KISDIS--PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCCCG--GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEE
T ss_pred ccCcCh--hhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCee
Confidence 765432 2667777777777777665421 356677777777777653
No 92
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=1.8e-14 Score=155.82 Aligned_cols=297 Identities=14% Similarity=0.125 Sum_probs=180.8
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC------CHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY------RKWEI 236 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~~ 236 (866)
..+..++||+++++.+.+++..+ +++.|+|++|+|||||++++++. . . .+|+.+.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 45678999999999999998764 58999999999999999999974 2 1 6777765432 45556
Q ss_pred HHHHHHHHhc---------------CCCCccccCCHHHHHHHHHHHhcc-CcEEEEEecCCChhh---------HHHHHh
Q 038220 237 LQDLCKKVLG---------------LGKADLDKMHMEDMKEELSNFLQE-RRFIIVLDDIWEKEA---------WDDLKA 291 (866)
Q Consensus 237 ~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~~---------~~~l~~ 291 (866)
+..+.+.+.. ....+.......++...+.+.... ++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666554322 000011123556667777666653 499999999976432 333333
Q ss_pred hCCCCCCCcEEEEEecchhh-hhc---------cC-CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHH
Q 038220 292 VFPDAKNGSRIIFTTRFKDV-AVY---------AD-PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQ 360 (866)
Q Consensus 292 ~l~~~~~gs~iivTtR~~~v-~~~---------~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~ 360 (866)
... ...+.++|+|++.... ... .. .....+++.+|+.+|+.+++.......+. ... .+.+.+
T Consensus 158 ~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~---~~~~~~ 230 (350)
T 2qen_A 158 AYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVP---ENEIEE 230 (350)
T ss_dssp HHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCC---HHHHHH
T ss_pred HHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHH
Confidence 222 1246789999887543 211 11 11136899999999999999775432211 111 357789
Q ss_pred HHHHcCCchhHHHHHhhhccCCCCCHHHHHH-HHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccc
Q 038220 361 IVKKCGGLPLAIVVLGGLLSSKEATYSEWLK-VLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIA 439 (866)
Q Consensus 361 i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~ 439 (866)
|++.|+|+|+++..++..+..... ...+.. ..+.....+. ..+. .+.+ . ++..+..+..+|. . .+.
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~---~l~~-~-~~~~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGD-FGRAMKRTLEVAKGLIM---GELE---ELRR-R-SPRYVDILRAIAL-G---YNR 297 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH---HHHH---HHHH-H-CHHHHHHHHHHHT-T---CCS
T ss_pred HHHHhCCCHHHHHHHHHHHhcccc-HhHHHHHHHHHHHHHHH---HHHH---HHHh-C-ChhHHHHHHHHHh-C---CCC
Confidence 999999999999998876432111 222211 1111100000 1111 1122 2 6788899998887 2 134
Q ss_pred hHHHHHHHHHcCcccCCCCCCHHHHHHHHHHHHhhCCccccccccCCCcEeEEEE-cHHHHHHHH
Q 038220 440 ARKLILLWVAEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPASRKSNGKIKTIRV-HDLLRELAI 503 (866)
Q Consensus 440 ~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~~-hdlv~~~~~ 503 (866)
...+.....+. . + .........+++.|.+.+++.... + .|.+ |++++++.+
T Consensus 298 ~~~l~~~~~~~-~----~-~~~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVK-G----T-KIPEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHT-T----C-CCCHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred HHHHHHHHHHH-h----C-CCCHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 44444432221 0 0 112456788999999999998652 1 3544 888888753
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.2e-15 Score=153.20 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=131.3
Q ss_pred ccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCc-cccccc-cccccccccEEeccC-ccccccCC
Q 038220 577 YMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTL-VDPIPL-VIWKMQQLKHVYFSE-FREMVVNP 652 (866)
Q Consensus 577 ~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p 652 (866)
.+..+|. +. .+|++|++++|.++.+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++ +... .+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence 3666776 43 378888888888887776 67788888888888885 777765 567788888888876 4443 333
Q ss_pred -CCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccC
Q 038220 653 -PADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQN 731 (866)
Q Consensus 653 -~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~ 731 (866)
.. +..+++|+.|++++|.. ..+|. +.
T Consensus 98 ~~~------------------------f~~l~~L~~L~l~~n~l----------------------------~~lp~-~~ 124 (239)
T 2xwt_C 98 PDA------------------------LKELPLLKFLGIFNTGL----------------------------KMFPD-LT 124 (239)
T ss_dssp TTS------------------------EECCTTCCEEEEEEECC----------------------------CSCCC-CT
T ss_pred HHH------------------------hCCCCCCCEEeCCCCCC----------------------------ccccc-cc
Confidence 22 33344444444444332 01222 22
Q ss_pred CCCCce---EEEEEee-cCCCCCccccCCCCCCC-eeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEE-ccCc
Q 038220 732 FPPNLT---ELSLQFC-FLTEDPLKELEKLPNLR-VLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRI-EEGA 805 (866)
Q Consensus 732 ~~~~L~---~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 805 (866)
.+++|+ .|++++| .+.......++.+++|+ .|++++|.+. .++......++|+.|++++|+.+..++. .+..
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc
Confidence 233343 7777777 66555555577788888 8888777765 3443333337888888888765555543 3456
Q ss_pred c-cccceeeEeecccCCccCCCccCCCCCCEEEEeCCC
Q 038220 806 M-CNLRRLEIIECMRLKIVPSGLWPLTTLSNLKLGYMP 842 (866)
Q Consensus 806 ~-p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 842 (866)
+ ++|+.|++++|. ++.+|.. .+++|+.|++++++
T Consensus 203 l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 203 VYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred cccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 7 888888888875 4566664 67888888888765
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.1e-15 Score=155.31 Aligned_cols=194 Identities=18% Similarity=0.075 Sum_probs=125.4
Q ss_pred eeEEEEecCCccccCcc-cccCCCCceEEEeeCCC-Cccccc-cccCCCCccEEecCC-Cccccccc-cccccccccEEe
Q 038220 567 LLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTW-LKMLPS-SMGNLFNLQSLDLSS-TLVDPIPL-VIWKMQQLKHVY 641 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~l~~-~~~~~lp~-~i~~l~~L~~L~ 641 (866)
.|+.|+++++.+..+|. .+.++++|++|++++|. ++.+|. .+.++++|++|++++ |.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68999999999987776 68899999999999997 888875 688999999999998 78888874 578899999999
Q ss_pred ccCccccccCCCCCCCCCCCc---eecceee-cCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCc-EEEe
Q 038220 642 FSEFREMVVNPPADASLPNLQ---TLLGICI-CETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQ-CLKM 716 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~---~L~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~-~L~l 716 (866)
+++|... .+|. ++.+++|+ .|++.++ ......+. .+..+++|+ .|++
T Consensus 112 l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~--------------------------~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVN--------------------------AFQGLCNETLTLKL 163 (239)
T ss_dssp EEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTT--------------------------TTTTTBSSEEEEEC
T ss_pred CCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcc--------------------------cccchhcceeEEEc
Confidence 9998766 4664 55555555 5544443 11111111 133344444 4444
Q ss_pred eeccccccccCCccCCCCCceEEEEEeec-CCCCCccccCCC-CCCCeeEEeccccCCCeEEECCCCCccccEEEeecCC
Q 038220 717 QSRITYTVDLSDVQNFPPNLTELSLQFCF-LTEDPLKELEKL-PNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLC 794 (866)
Q Consensus 717 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 794 (866)
++|.+. .+|......++|+.|+|++|. +.......++.+ ++|+.|+|++|.+.. ++. ..|++|+.|.+.++.
T Consensus 164 ~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 164 YNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPS--KGLEHLKELIARNTW 237 (239)
T ss_dssp CSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCC--TTCTTCSEEECTTC-
T ss_pred CCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc--CCh--hHhccCceeeccCcc
Confidence 444321 223222222567777777773 554444556666 677777776666542 222 256666666666543
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=2.9e-14 Score=157.89 Aligned_cols=301 Identities=15% Similarity=0.063 Sum_probs=180.7
Q ss_pred CCCCeeechhhHHHHHHHH-hcC--C--CceEEEEE--EccCCChHHHHHHHHhcCcccc---CCCC-ceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRV-IHG--G--LRRSVISI--IGMAGLGKTTLAKKMYQSSDVK---KHFD-CCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l-~~~--~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~ 232 (866)
.+..++||+++++++.+++ ... + ...+.+.| +|++|+||||||+.+++..... ..+. .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3478999999999999988 421 1 23456666 9999999999999999742111 1123 367888767778
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCCh--------hhHHHHHhhCCCC---C--
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEK--------EAWDDLKAVFPDA---K-- 297 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~--------~~~~~l~~~l~~~---~-- 297 (866)
...++..++.++..... ....+..++...+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 100 ~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQ--VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp HHHHHHHHHHHHTCCCC--CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred HHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 88899999888855311 112234566666766665 67999999999763 2333333333211 2
Q ss_pred CCcEEEEEecchhhhhcc--------CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---
Q 038220 298 NGSRIIFTTRFKDVAVYA--------DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCG--- 366 (866)
Q Consensus 298 ~gs~iivTtR~~~v~~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 366 (866)
....+|+||+...+.... ......+.+.+++.++.+++|...+...... ...+ .+....|++.++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~---~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWE---PRHLELISDVYGEDK 253 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCC---HHHHHHHHHHHCGGG
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCC---hHHHHHHHHHHHHhc
Confidence 345588788755432111 1111238999999999999997654311100 0112 466788999999
Q ss_pred ---CchhHHHHHhhhcc------CC-CCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCC--C
Q 038220 367 ---GLPLAIVVLGGLLS------SK-EATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFP--E 434 (866)
Q Consensus 367 ---g~Plai~~i~~~l~------~~-~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp--~ 434 (866)
|.|..+..+..... .. .-+.+.+..++.... . ...+.-++..||++.+.++..++.+. .
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSIHELIILRLIAEATLGG 324 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 99976555443211 01 112333333332211 0 23344567889999999999888753 2
Q ss_pred CcccchHHHHHHHH--H-cCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 435 DFEIAARKLILLWV--A-EGFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 435 ~~~i~~~~li~~W~--a-eg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
+..+....+...+. + .- ... ..........+++.|.+.+++....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTM-YNV--KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHH-SCC--CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhh-cCC--CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 23454544444332 2 10 100 1112455778999999999998764
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=157.30 Aligned_cols=220 Identities=16% Similarity=0.118 Sum_probs=130.2
Q ss_pred eEEEEecCCccc-----cCcccccCCCCceEEEeeCCCCc-cccccc--cCCCCccEEecCCCccccc-c----cccccc
Q 038220 568 LQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTWLK-MLPSSM--GNLFNLQSLDLSSTLVDPI-P----LVIWKM 634 (866)
Q Consensus 568 Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i--~~l~~L~~L~l~~~~~~~l-p----~~i~~l 634 (866)
++.+.+.++.+. .++. ...+++|++|++++|.+. ..|..+ +++.+|++|++++|.+... | ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 556666665542 1111 223456888888887776 445555 7777888888887755532 1 234567
Q ss_pred ccccEEeccCccccccCCCCCCCCCCCceecceeecCCcc--hh--HhhccccCCCeEEEEcccchhHHHHHHh-hcCCC
Q 038220 635 QQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSC--VE--QGLDKLLNLRELGLHGDLILHEEALCKW-IYNLK 709 (866)
Q Consensus 635 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~ 709 (866)
++|++|++++|......|..++.+++|++|++.++..... ++ ..++.+++|++|++++|........+.. +..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7888888887777644556677777777777777643321 21 1135677788888887776444444433 35667
Q ss_pred CCcEEEeeeccccccccCCccCC---CCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCcccc
Q 038220 710 GLQCLKMQSRITYTVDLSDVQNF---PPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQ 786 (866)
Q Consensus 710 ~L~~L~l~~~~~~~~~l~~~~~~---~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 786 (866)
+|++|++++|.+.. ..|..+.. +++|++|+|++|.++ ..+..+. ++|+.|+|++|.+.+. + ....+++|+
T Consensus 225 ~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~--~-~~~~l~~L~ 297 (310)
T 4glp_A 225 QPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA--P-QPDELPEVD 297 (310)
T ss_dssp CCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC--C-CTTSCCCCS
T ss_pred CCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC--c-hhhhCCCcc
Confidence 77777777765422 22332222 256777777777665 2333332 5667777766666541 1 135556666
Q ss_pred EEEeecCCC
Q 038220 787 FLKLSNLCY 795 (866)
Q Consensus 787 ~L~l~~~~~ 795 (866)
.|++++|+.
T Consensus 298 ~L~L~~N~l 306 (310)
T 4glp_A 298 NLTLDGNPF 306 (310)
T ss_dssp CEECSSTTT
T ss_pred EEECcCCCC
Confidence 666666553
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1e-16 Score=173.98 Aligned_cols=250 Identities=12% Similarity=0.026 Sum_probs=159.7
Q ss_pred EEecCCccc-cCcccccCCCCceEEEeeCCCCcccc-----ccccCCC-CccEEecCCCccccc-ccccccc-----ccc
Q 038220 571 LDLEGVYMA-LIDSSIGNLIHLRYLDLRKTWLKMLP-----SSMGNLF-NLQSLDLSSTLVDPI-PLVIWKM-----QQL 637 (866)
Q Consensus 571 L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~L 637 (866)
++++.+.+. .+|..+....+|++|+|++|.++..+ ..+.+++ +|++|++++|.+... +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 567777775 44555566666999999999998766 5677888 899999999977665 4445554 899
Q ss_pred cEEeccCccccccCCCC----CCCC-CCCceecceeecCCcchh----Hhhcc-ccCCCeEEEEcccch--hHHHHHHhh
Q 038220 638 KHVYFSEFREMVVNPPA----DASL-PNLQTLLGICICETSCVE----QGLDK-LLNLRELGLHGDLIL--HEEALCKWI 705 (866)
Q Consensus 638 ~~L~l~~~~~~~~~p~~----~~~l-~~L~~L~~~~~~~~~~~~----~~l~~-l~~L~~L~l~~~~~~--~~~~l~~~l 705 (866)
++|++++|......+.. +..+ ++|++|++.++....... ..+.. .++|++|++++|... ....++..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999866333332 3333 788888888775443222 22334 258888888887653 344566666
Q ss_pred cCCC-CCcEEEeeeccccccc---cCCccCCC-CCceEEEEEeecCCCCCcc----ccCC-CCCCCeeEEeccccCCCe-
Q 038220 706 YNLK-GLQCLKMQSRITYTVD---LSDVQNFP-PNLTELSLQFCFLTEDPLK----ELEK-LPNLRVLKLKQSSYLGKE- 774 (866)
Q Consensus 706 ~~~~-~L~~L~l~~~~~~~~~---l~~~~~~~-~~L~~L~L~~~~l~~~~~~----~l~~-l~~L~~L~L~~~~~~~~~- 774 (866)
..++ +|++|++++|.+.... +...+..+ ++|+.|+|++|.+...... .+.. .++|+.|+|++|.+.+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 6665 8888888877543211 11122233 4788888888877654322 3333 347888888777766421
Q ss_pred --EEECCCCCccccEEEeecCC---CC----cceEEccCcccccceeeEeecccC
Q 038220 775 --MVSSSGGFSQLQFLKLSNLC---YL----ERWRIEEGAMCNLRRLEIIECMRL 820 (866)
Q Consensus 775 --~~~~~~~~~~L~~L~l~~~~---~l----~~~~~~~~~~p~L~~L~l~~c~~l 820 (866)
+...+..+++|+.|++++|. .. ..+......+++|+.|++++|+.-
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 12334667778888887765 11 112223446677777777777643
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=2.5e-13 Score=147.20 Aligned_cols=293 Identities=14% Similarity=0.099 Sum_probs=173.6
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC-----CCHHHHH
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE-----YRKWEIL 237 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~ 237 (866)
..+..++||+++++.+.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+.+... .+....+
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHH
Confidence 355789999999999999 754 49999999999999999999974 222 2578887643 3444555
Q ss_pred HHHHHHHhc-------------C-C---CC----cc-----ccCCHHHHHHHHHHHhccCcEEEEEecCCChh-----h-
Q 038220 238 QDLCKKVLG-------------L-G---KA----DL-----DKMHMEDMKEELSNFLQERRFIIVLDDIWEKE-----A- 285 (866)
Q Consensus 238 ~~i~~~~~~-------------~-~---~~----~~-----~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----~- 285 (866)
..+.+.+.. . . .+ +. .......+.+.+.+... ++++|||||++... .
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 554443311 0 0 00 00 11234455555544322 49999999997532 2
Q ss_pred HHHHHhhCCCCCCCcEEEEEecchhh-hhc---------cCCC-CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhH
Q 038220 286 WDDLKAVFPDAKNGSRIIFTTRFKDV-AVY---------ADPG-SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWS 354 (866)
Q Consensus 286 ~~~l~~~l~~~~~gs~iivTtR~~~v-~~~---------~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~ 354 (866)
+..+... .+...+.++|+|++.... ... .... ...+.+.+|+.+++.+++.......+. . ...
T Consensus 158 ~~~l~~~-~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~-~~~- 231 (357)
T 2fna_A 158 LPALAYA-YDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI---D-FKD- 231 (357)
T ss_dssp HHHHHHH-HHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC---C-CCC-
T ss_pred HHHHHHH-HHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC---C-CCc-
Confidence 2233222 222236789999987643 111 1111 146899999999999999875421111 1 111
Q ss_pred HHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHH-HHhhhhhccCCChhHHHHHH-HhcC--CCCCchhhHHhHhc
Q 038220 355 RELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKV-LQSVQWQLNLNPAKCMDILK-LSYQ--DLPYYLKPCFLYIG 430 (866)
Q Consensus 355 ~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~a 430 (866)
. ..|++.|+|+|+++..++..+..... ...|... .+... ..+..-+. +.+. .+|+..+..+..+|
T Consensus 232 --~-~~i~~~t~G~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 --Y-EVVYEKIGGIPGWLTYFGFIYLDNKN-LDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp --H-HHHHHHHCSCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred --H-HHHHHHhCCCHHHHHHHHHHHccccc-hHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1 78999999999999999877643222 3333221 11110 11111121 2221 57888999999999
Q ss_pred cCCCCcccchHHHHHHHH-HcCcccCCCCCCHHHHHHHHHHHHhhCCccccccccCCCcEeEEE-EcHHHHHHH
Q 038220 431 LFPEDFEIAARKLILLWV-AEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPASRKSNGKIKTIR-VHDLLRELA 502 (866)
Q Consensus 431 ~fp~~~~i~~~~li~~W~-aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~~~~~~~~~~~-~hdlv~~~~ 502 (866)
. . . +...+....- ..|. .........+++.|.+.++|.... + .|+ .|++++++.
T Consensus 301 ~-g--~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K-C--G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp T-C--B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred c-C--C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 8 2 1 3344432110 1121 012456788999999999998653 1 255 488888763
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=3.3e-16 Score=169.99 Aligned_cols=243 Identities=14% Similarity=0.100 Sum_probs=177.8
Q ss_pred CCccccccCCCeeEEEEecCCccccCc-----ccccCCC-CceEEEeeCCCCccc-cccccCC-----CCccEEecCCCc
Q 038220 556 EPVGSILEEYKLLQVLDLEGVYMALID-----SSIGNLI-HLRYLDLRKTWLKML-PSSMGNL-----FNLQSLDLSSTL 623 (866)
Q Consensus 556 ~~~~~~~~~~~~Lr~L~l~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~L~~L~l~~~~ 623 (866)
...+.++...+.|+.|++++|.+...+ ..+.+++ +|++|+|++|.++.. +..+..+ .+|++|++++|.
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 344556666677999999999997665 5677888 899999999999855 4555554 899999999998
Q ss_pred ccccccc-----cccc-ccccEEeccCccccccCCCC----CCC-CCCCceecceeecCCc----chhHhhcccc-CCCe
Q 038220 624 VDPIPLV-----IWKM-QQLKHVYFSEFREMVVNPPA----DAS-LPNLQTLLGICICETS----CVEQGLDKLL-NLRE 687 (866)
Q Consensus 624 ~~~lp~~-----i~~l-~~L~~L~l~~~~~~~~~p~~----~~~-l~~L~~L~~~~~~~~~----~~~~~l~~l~-~L~~ 687 (866)
+...+.. +..+ ++|++|++++|......+.. +.. .++|++|++.++.... .+...+..++ +|++
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 7755433 4455 89999999999876332222 333 3699999999885542 3444466666 9999
Q ss_pred EEEEcccch--hHHHHHHhhcCC-CCCcEEEeeecccccc---ccCCccCC-CCCceEEEEEeecCCCCCc----cccCC
Q 038220 688 LGLHGDLIL--HEEALCKWIYNL-KGLQCLKMQSRITYTV---DLSDVQNF-PPNLTELSLQFCFLTEDPL----KELEK 756 (866)
Q Consensus 688 L~l~~~~~~--~~~~l~~~l~~~-~~L~~L~l~~~~~~~~---~l~~~~~~-~~~L~~L~L~~~~l~~~~~----~~l~~ 756 (866)
|++++|... ....+...+..+ ++|+.|++++|.+... .++..+.. +++|++|+|++|.++.... ..+..
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 999999753 345566677777 4999999999875321 13333333 4699999999999877654 33577
Q ss_pred CCCCCeeEEeccccCCC------eEEECCCCCccccEEEeecCCCCcc
Q 038220 757 LPNLRVLKLKQSSYLGK------EMVSSSGGFSQLQFLKLSNLCYLER 798 (866)
Q Consensus 757 l~~L~~L~L~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~l~~ 798 (866)
+++|+.|+|++|.+... .+...+..+++|+.|++++|+.-..
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 89999999999884421 1223466888999999999875443
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.1e-14 Score=144.81 Aligned_cols=101 Identities=18% Similarity=0.115 Sum_probs=69.2
Q ss_pred eeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcccccccc-ccccccccEEeccC
Q 038220 567 LLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSE 644 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 644 (866)
..+.++++++.+..+|..+. .+|++|++++|.++.++. .+.++.+|++|++++|.+..++.. +..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 35677788877777776655 578888888888776654 577788888888888876666543 67778888888887
Q ss_pred ccccccCCCCCCCCCCCceecceee
Q 038220 645 FREMVVNPPADASLPNLQTLLGICI 669 (866)
Q Consensus 645 ~~~~~~~p~~~~~l~~L~~L~~~~~ 669 (866)
|......+..+..+++|++|++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccccChhHhcccCCCCEEEcCCC
Confidence 7665333334455556665555554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=1.3e-14 Score=151.83 Aligned_cols=125 Identities=20% Similarity=0.162 Sum_probs=74.9
Q ss_pred cCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEec
Q 038220 563 EEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYF 642 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 642 (866)
..++.|+.|++++|.+..++. +..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 345566777777776666643 6667777777777777776665 6677777777777776666553 667777777777
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
++|... .+ ..+..+++|+.|++.++.... ++. ++.+++|+.|++++|.
T Consensus 120 ~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTSCCC-CC-GGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECCSSC
T ss_pred CCCcCC-CC-hhhcCCCCCCEEEccCCcCCc-chh-hccCCCCCEEEccCCc
Confidence 776554 22 234455555555555442221 222 4455555555555544
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2.8e-14 Score=153.92 Aligned_cols=237 Identities=17% Similarity=0.136 Sum_probs=124.1
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcc-ccccc-cccccccccEEe-ccC
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLV-DPIPL-VIWKMQQLKHVY-FSE 644 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~-~~lp~-~i~~l~~L~~L~-l~~ 644 (866)
++++.+++.+.++|..+ ..++++|+|++|.|+.+|. .+.++++|++|+|++|.+ +.+|. .+..+++|+++. +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666677777777655 2467777777777777775 467777777777777754 44553 356677766543 334
Q ss_pred ccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHH-HhhcCC-CCCcEEEeeecccc
Q 038220 645 FREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALC-KWIYNL-KGLQCLKMQSRITY 722 (866)
Q Consensus 645 ~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~-~~L~~L~l~~~~~~ 722 (866)
+......|..+..+++|++|++.++......+.......++..|++.++... ..++ ..+..+ ..++.|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i--~~l~~~~f~~~~~~l~~L~L~~N~i- 166 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--HTIERNSFVGLSFESVILWLNKNGI- 166 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC--CEECTTSSTTSBSSCEEEECCSSCC-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc--ccccccchhhcchhhhhhccccccc-
Confidence 4444233455677777777777766433222222233344555555443210 0000 011122 2355555555442
Q ss_pred ccccCCccCCCCCceEEEEEee-cCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCCCcceEE
Q 038220 723 TVDLSDVQNFPPNLTELSLQFC-FLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCYLERWRI 801 (866)
Q Consensus 723 ~~~l~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 801 (866)
..+|.......+|+.|.+.++ .+...+...++.+++|+.|+|++|.+.. ++ ...|.+|+.|.+.++..++.+|.
T Consensus 167 -~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp--~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 167 -QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LP--SYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--CC--SSSCTTCCEEECTTCTTCCCCCC
T ss_pred -cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--cC--hhhhccchHhhhccCCCcCcCCC
Confidence 223332223345566666543 3333333345566666666666655542 22 23455555555555555555542
Q ss_pred ccCcccccceeeEee
Q 038220 802 EEGAMCNLRRLEIIE 816 (866)
Q Consensus 802 ~~~~~p~L~~L~l~~ 816 (866)
...+++|+.+++.+
T Consensus 242 -l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 -LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTCCSCCEEECSC
T ss_pred -chhCcChhhCcCCC
Confidence 44556666666543
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=2.3e-14 Score=154.55 Aligned_cols=255 Identities=19% Similarity=0.089 Sum_probs=180.4
Q ss_pred ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccc-ccccccccEEeccCccccccCCC-CCCCCCCCc
Q 038220 585 IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEFREMVVNPP-ADASLPNLQ 662 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~ 662 (866)
++.+. -+.++.++++++.+|..+ ..++++|+|++|.+..+|.. +..+++|++|++++|.....+|. .+.++++|.
T Consensus 6 ~C~C~-~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSEEE-TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred ccEee-CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 34443 256788899999999877 46899999999999999974 78999999999999987655664 467888888
Q ss_pred eecceeecC-CcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccC-CCCCceEEE
Q 038220 663 TLLGICICE-TSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQN-FPPNLTELS 740 (866)
Q Consensus 663 ~L~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~ 740 (866)
.+....+.. ....+..+..+++|+.|++++|...... ........++..|++..+..+....+..+. ....++.|+
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCC--chhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 765544323 3344555889999999999998753211 011223446677777663322222222233 335789999
Q ss_pred EEeecCCCCCccccCCCCCCCeeEEeccccCCCeEE-ECCCCCccccEEEeecCCCCcceEEccCcccccceeeEeeccc
Q 038220 741 LQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMV-SSSGGFSQLQFLKLSNLCYLERWRIEEGAMCNLRRLEIIECMR 819 (866)
Q Consensus 741 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~l~~c~~ 819 (866)
|++|.++... .......+|+.|.+++++... .++ ..+.++++|++|++++|. +..+|. +.+.+|+.|.+.+|..
T Consensus 161 L~~N~i~~i~-~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 161 LNKNGIQEIH-NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYN 235 (350)
T ss_dssp CCSSCCCEEC-TTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTT
T ss_pred cccccccCCC-hhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCC
Confidence 9999886543 334456789999997644333 344 346889999999999985 455553 4688999999999999
Q ss_pred CCccCCCccCCCCCCEEEEeCCCHHHHHHHhh
Q 038220 820 LKIVPSGLWPLTTLSNLKLGYMPFDFDLMAQD 851 (866)
Q Consensus 820 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 851 (866)
++.+|. +..+++|+.+++.+ +.....-..|
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~-~~~c~~~~~~ 265 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTY-PSHCCAFANW 265 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSC-HHHHHHHHHS
T ss_pred cCcCCC-chhCcChhhCcCCC-Cccccchhhh
Confidence 999996 88999999999974 3333333333
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=156.58 Aligned_cols=225 Identities=16% Similarity=0.065 Sum_probs=126.3
Q ss_pred CceEEEeeCCCCc-----cccccccCCCCccEEecCCCccc-cccccc--cccccccEEeccCccccccCCCCCCCCCCC
Q 038220 590 HLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLVD-PIPLVI--WKMQQLKHVYFSEFREMVVNPPADASLPNL 661 (866)
Q Consensus 590 ~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~-~lp~~i--~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 661 (866)
.++.|.+.++.+. .++.. ..+.+|++|++++|.+. ..|..+ ..+++|++|++++|......+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-------- 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-------- 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------
Confidence 3566666666554 11111 12345666777666443 344444 5666666666666654422210
Q ss_pred ceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccc---cccCCccCCCCCceE
Q 038220 662 QTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYT---VDLSDVQNFPPNLTE 738 (866)
Q Consensus 662 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~ 738 (866)
.....+..+++|+.|++++|.... ..+..+..+++|++|++++|.+.. ...+.+...+++|++
T Consensus 136 ------------~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 136 ------------LAELQQWLKPGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp ------------HHHHHTTBCSCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ------------hHHHHhhhccCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 000112344555555555544311 112234455555555555554321 111223345667888
Q ss_pred EEEEeecCCCCC--cc-ccCCCCCCCeeEEeccccCCCeEEECCCCC---ccccEEEeecCCCCcceEEccCccccccee
Q 038220 739 LSLQFCFLTEDP--LK-ELEKLPNLRVLKLKQSSYLGKEMVSSSGGF---SQLQFLKLSNLCYLERWRIEEGAMCNLRRL 812 (866)
Q Consensus 739 L~L~~~~l~~~~--~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 812 (866)
|+|++|.++... +. .++.+++|++|+|++|.+.+ ..+..+..+ ++|++|++++|... .+|... +++|+.|
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L 277 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVL 277 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCE
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEE
Confidence 888887764211 11 24667888888888887765 223334444 68888888887654 554433 3789999
Q ss_pred eEeecccCCccCCCccCCCCCCEEEEeCCCH
Q 038220 813 EIIECMRLKIVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 813 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
++++|. ++.+|. +..+++|+.|++++|++
T Consensus 278 ~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 278 DLSSNR-LNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ECCSCC-CCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ECCCCc-CCCCch-hhhCCCccEEECcCCCC
Confidence 998886 445555 67788999999999874
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=6.8e-14 Score=143.17 Aligned_cols=177 Identities=21% Similarity=0.153 Sum_probs=119.7
Q ss_pred CCceEEEeeCCCCccccccccCCCCccEEecCCCccccccc-cccccccccEEeccCccccccCCCCCCCCCCCceecce
Q 038220 589 IHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGI 667 (866)
Q Consensus 589 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~ 667 (866)
...++++++++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999998775 689999999998877765 58899999999999998775555557888888888877
Q ss_pred eecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCC
Q 038220 668 CICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLT 747 (866)
Q Consensus 668 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 747 (866)
++......+..+..+++|+.|++++|.+ . ...+..+..+++|+.|+|++|.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l--------------------------~-~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQL--------------------------K-SLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCC--------------------------C-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcC--------------------------C-CcChhHhccCCcccEEECcCCcCC
Confidence 7744433333345555555555555432 1 112233445566777777777666
Q ss_pred CCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEEeecCCC
Q 038220 748 EDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 748 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 795 (866)
......++.+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCce
Confidence 5554456667777777777666653 2223455667777777776654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.7e-14 Score=165.57 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=37.7
Q ss_pred ccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
+..++.|+.|+|++|.+..++. +..+++|++|+|++|.+..+| .+..+++|++|+|++|.+..++ .+..+++|++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEE
Confidence 3444444444444444444433 444444444444444444443 3444444444444444444432 344444444444
Q ss_pred ccCcc
Q 038220 642 FSEFR 646 (866)
Q Consensus 642 l~~~~ 646 (866)
+++|.
T Consensus 138 Ls~N~ 142 (605)
T 1m9s_A 138 LGNNK 142 (605)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 44443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=6.9e-14 Score=146.34 Aligned_cols=173 Identities=19% Similarity=0.158 Sum_probs=133.6
Q ss_pred ccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCcee
Q 038220 585 IGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTL 664 (866)
Q Consensus 585 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 664 (866)
...+++|++|++++|.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|... .+| .++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEE
Confidence 457889999999999999887 48899999999999999888887 999999999999999775 444 48889999999
Q ss_pred cceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEee
Q 038220 665 LGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFC 744 (866)
Q Consensus 665 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 744 (866)
++.++... .++. +..+++|+.|++++|..... ..+..+++|+.|++++|.+. .++. +..+++|+.|+|++|
T Consensus 118 ~L~~n~i~-~~~~-l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~--~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 118 SLEHNGIS-DING-LVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp ECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSS
T ss_pred ECCCCcCC-CChh-hcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccc--cchh-hcCCCccCEEECCCC
Confidence 98887443 3444 78888899998888875433 45677788888888877542 2222 556678888888888
Q ss_pred cCCCCCccccCCCCCCCeeEEeccccCC
Q 038220 745 FLTEDPLKELEKLPNLRVLKLKQSSYLG 772 (866)
Q Consensus 745 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 772 (866)
.++.. +.+..+++|+.|++++|.+..
T Consensus 189 ~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC--hhhccCCCCCEEECcCCcccC
Confidence 77542 347777888888887776654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.9e-14 Score=161.87 Aligned_cols=175 Identities=21% Similarity=0.138 Sum_probs=108.6
Q ss_pred ccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEe
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVY 641 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 641 (866)
+..++.|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. ++.+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 345566777777777776665 46777777777777777777765 777777777777777776665 577777777777
Q ss_pred ccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccc
Q 038220 642 FSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRIT 721 (866)
Q Consensus 642 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 721 (866)
+++|... .+ ..+..+++|+.|++..+.... ++. ++.+++|+.|+|++|.+.... . +..+++|+.|+|++|.+
T Consensus 116 Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 116 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-ITV-LSRLTKLDTLSLEDNQISDIV---P-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTSCCC-CC-GGGGGCTTCSEEECCSSCCCC-CGG-GGSCTTCSEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCC
T ss_pred ecCCCCC-CC-ccccCCCccCEEECCCCccCC-chh-hcccCCCCEEECcCCcCCCch---h-hccCCCCCEEECcCCCC
Confidence 7777654 33 346666677777666663332 233 666666666666666543221 1 45556666666665543
Q ss_pred cccccCCccCCCCCceEEEEEeecCCCCC
Q 038220 722 YTVDLSDVQNFPPNLTELSLQFCFLTEDP 750 (866)
Q Consensus 722 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 750 (866)
. .+| .+..+++|+.|+|++|.+...+
T Consensus 188 ~--~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 188 S--DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp C--BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred C--CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 2 122 2344556666666666554443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.1e-13 Score=135.91 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=86.4
Q ss_pred cCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceec
Q 038220 586 GNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLL 665 (866)
Q Consensus 586 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 665 (866)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45666777777777777666 5667777777777776555544 566677777777777666544555666666666666
Q ss_pred ceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeec
Q 038220 666 GICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCF 745 (866)
Q Consensus 666 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 745 (866)
+.++......+..++.+++|+.|++++|.. ...+| .+..+++|+.|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~---------------------------i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGA---------------------------ITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTB---------------------------CCCCG-GGGGCSSCCEEECTTBC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCC---------------------------ccccH-hhcCCCCCCEEECCCCC
Confidence 655533333333355555555555554431 01111 23334555555555555
Q ss_pred CCCCCccccCCCCCCCeeEEecccc
Q 038220 746 LTEDPLKELEKLPNLRVLKLKQSSY 770 (866)
Q Consensus 746 l~~~~~~~l~~l~~L~~L~L~~~~~ 770 (866)
+... ..+..+++|+.|++++|.+
T Consensus 171 i~~~--~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 171 VHDY--RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCCC--TTGGGCSSCCEEEECBC--
T ss_pred CcCh--HHhccCCCCCEEEeeCccc
Confidence 5432 2455566666666665554
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=8.6e-14 Score=136.56 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=73.6
Q ss_pred CCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccc-ccccccccccccEEec
Q 038220 564 EYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDP-IPLVIWKMQQLKHVYF 642 (866)
Q Consensus 564 ~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l 642 (866)
.++.|+.|+++++.+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3455666666666665555 4566666666666666555443 55566666666666665443 4555666666666666
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
++|......|..++.+++|++|++.++.....++. +..+++|+.|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG 170 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-GGGCSSCCEEECTTBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-hcCCCCCCEEECCCCC
Confidence 66655544455556666666666665532333333 5556666666665554
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.3e-13 Score=156.31 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=68.7
Q ss_pred eeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCcc
Q 038220 567 LLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 646 (866)
.|+.|++++|.+..+|..+. ++|++|+|++|.++.+| +.+.+|++|++++|.+..+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 56777777777766666553 56777777777777777 346677777777776666766 444 77777777776
Q ss_pred ccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 647 EMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 647 ~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
.. .+|. .+++|+.|++.++.... ++. .+++|+.|++++|.
T Consensus 132 l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 132 LT-MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred CC-CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 55 3554 45666666665553221 222 23444555544443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.7e-14 Score=143.12 Aligned_cols=120 Identities=17% Similarity=0.100 Sum_probs=66.1
Q ss_pred eEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccc
Q 038220 568 LQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 647 (866)
+..++++++.+..++ .+..+++|++|++++|.++.+| .++.+.+|++|++++|.+..+|. +..+++|++|++++|..
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 444455555555544 4555666666666666666665 55666666666666666666655 66666666666666654
Q ss_pred cccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 648 MVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 648 ~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
. .+|.. .. ++|++|++.++... .++. +..+++|+.|++++|..
T Consensus 98 ~-~l~~~-~~-~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 98 K-NLNGI-PS-ACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp S-CCTTC-CC-SSCCEEECCSSCCS-BSGG-GTTCTTCCEEECTTSCC
T ss_pred C-CcCcc-cc-CcccEEEccCCccC-CChh-hcCcccccEEECCCCcC
Confidence 4 33322 22 55555555554222 2232 55555555555555543
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=5.1e-13 Score=132.39 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=50.9
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCcccccccc-ccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 646 (866)
+.++.+++.+..+|..+ .++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35566666666666544 34677777777777766643 56777777777777766666554 4566777777776665
Q ss_pred cc
Q 038220 647 EM 648 (866)
Q Consensus 647 ~~ 648 (866)
..
T Consensus 88 l~ 89 (208)
T 2o6s_A 88 LQ 89 (208)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.5e-13 Score=152.88 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=72.6
Q ss_pred CceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceee
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICI 669 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~ 669 (866)
+|++|++++|.++.+|..+. .+|++|++++|.+..+| ..+++|++|++++|... .+|. ++. +|++|++.++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCC
Confidence 89999999999999998774 78999999999988998 56899999999999877 5776 554 8888888777
Q ss_pred cCCcchhHhhccccCCCeEEEEcccc
Q 038220 670 CETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 670 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
.... ++. .+++|+.|++++|.+
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQL 152 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCC
T ss_pred cCCC-CCC---cCccccEEeCCCCcc
Confidence 4333 333 455666666666543
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=3.9e-11 Score=131.30 Aligned_cols=296 Identities=15% Similarity=0.052 Sum_probs=181.4
Q ss_pred CCeeechhhHHHHHHHHhc--CCCceEEEEEEccCCChHHHHHHHHhcCccc----cCC--CCceEEEEeCCCC-CHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIH--GGLRRSVISIIGMAGLGKTTLAKKMYQSSDV----KKH--FDCCAWAYVSQEY-RKWEI 236 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~--f~~~~wv~v~~~~-~~~~~ 236 (866)
..++||+++++++.+++.. .....+.+.|+|++|+||||||+.+++...- ... ....+|+.+.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6899999999999988865 2233568999999999999999999983111 111 2346788777766 78888
Q ss_pred HHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhh---HHH-HHhhCCCCCCCcEEEEEecchhhh
Q 038220 237 LQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEA---WDD-LKAVFPDAKNGSRIIFTTRFKDVA 312 (866)
Q Consensus 237 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~-l~~~l~~~~~gs~iivTtR~~~v~ 312 (866)
+..++..+.+... .........+...+.+.+..++.+|||||++.... .+. +...+... .+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSV-PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCC-CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCC-CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchH
Confidence 8888888854311 11222345667778888877767999999976432 222 22222222 678899998865321
Q ss_pred hcc-----CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---Cchh-HHHHHhhhc--cC
Q 038220 313 VYA-----DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCG---GLPL-AIVVLGGLL--SS 381 (866)
Q Consensus 313 ~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~i~~~l--~~ 381 (866)
... ......+.+.+++.++..+++...+...-.. ...+ .+..+.+++.++ |.|. |+..+-... ..
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK-GTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT-TSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc-CCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 111 1111479999999999999999875421100 1222 245566777776 8886 333332221 11
Q ss_pred --CCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHHcCcccCCCCC
Q 038220 382 --KEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVAEGFVQPRGIE 459 (866)
Q Consensus 382 --~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~aeg~i~~~~~~ 459 (866)
..-+.+.+..+++... ...+..++..|+++.+..+..++....+-.+. ......--..| + ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~----~~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q----KP 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----CC
T ss_pred CCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----CC
Confidence 2235677776665432 13456677889988888877777611101111 11111111122 1 11
Q ss_pred CHHHHHHHHHHHHhhCCccccccc
Q 038220 460 PLEDVAEDYLEELVGRSMVEPASR 483 (866)
Q Consensus 460 ~~e~~~~~~l~~L~~~~ll~~~~~ 483 (866)
........+++.|...++++....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 234667889999999999987653
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=5.3e-13 Score=132.24 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=83.1
Q ss_pred CCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCcccccccc-ccccccccEEe
Q 038220 565 YKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVY 641 (866)
Q Consensus 565 ~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 641 (866)
.+.|++|+++++.+..++.. +.++++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35789999999998877754 68899999999999999988764 58899999999999988888765 67899999999
Q ss_pred ccCccccccCCC-CCCCCCCCceecceee
Q 038220 642 FSEFREMVVNPP-ADASLPNLQTLLGICI 669 (866)
Q Consensus 642 l~~~~~~~~~p~-~~~~l~~L~~L~~~~~ 669 (866)
+++|... .+|. .+..+++|++|++.++
T Consensus 107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCcCc-ccCHhHhccCCcCCEEECCCC
Confidence 9998776 4443 3566666666666555
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=9.3e-11 Score=128.51 Aligned_cols=320 Identities=15% Similarity=0.110 Sum_probs=191.8
Q ss_pred CCCeeechhhHHHHHHHHhc----CCCceEEEEEEccCCChHHHHHHHHhcCccccCCC-CceEEEEeCCCCCHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIH----GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF-DCCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~ 239 (866)
+..++||+++++++.+++.. ..+..+.+.|+|++|+||||||+.+++. ..... ...+|+.++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36899999999999999876 2223348999999999999999999974 32221 24677887777778888888
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCCh--hhHHHHHhhCCCCC----CCcEEEEEecchhh
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEK--EAWDDLKAVFPDAK----NGSRIIFTTRFKDV 311 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~~----~gs~iivTtR~~~v 311 (866)
++..+.... .........+...+...+. +++.+||||+++.. .....+...+.... .+..+|++|+....
T Consensus 94 l~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 94 IARSLNIPF--PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHTTCCC--CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHhCccC--CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 888775431 1122345566666666664 56889999999764 44556665554322 46778888876543
Q ss_pred hhccCC------CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc---------CCchhHHHHHh
Q 038220 312 AVYADP------GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKC---------GGLPLAIVVLG 376 (866)
Q Consensus 312 ~~~~~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~i~ 376 (866)
...... ....+.+.+++.++..+++...+...... ...+ .+....|++.+ +|.|-.+..+.
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYS---EDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 322211 11369999999999999998875431100 0112 46677888888 78875444333
Q ss_pred hhcc------C-CCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCC---CCcccchHHHHHH
Q 038220 377 GLLS------S-KEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFP---EDFEIAARKLILL 446 (866)
Q Consensus 377 ~~l~------~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp---~~~~i~~~~li~~ 446 (866)
.... . ..-+.+....+...... .. +.-.+..||.+.+.++..++.+. .+..+....+...
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLF------GI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSC------CC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhh------hh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 2211 1 11123333333332210 11 12234567788888887777654 2224555555554
Q ss_pred HHH----cCcccCCCCCCHHHHHHHHHHHHhhCCccccccc----cCCCcEeEEE----EcHHHHHHHHHhhc
Q 038220 447 WVA----EGFVQPRGIEPLEDVAEDYLEELVGRSMVEPASR----KSNGKIKTIR----VHDLLRELAISKAK 507 (866)
Q Consensus 447 W~a----eg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~~----~~~~~~~~~~----~hdlv~~~~~~~~~ 507 (866)
+.. .|.. .........++++|...++|..... +..++...++ .|+++..+...+..
T Consensus 318 ~~~~~~~~~~~-----~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 318 YKIVCEEYGER-----PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHHHHTTCC-----CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-----CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 422 1211 1124567889999999999998654 1122222333 34666665554443
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.5e-12 Score=133.74 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=108.8
Q ss_pred cccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEE
Q 038220 561 ILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHV 640 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 640 (866)
.+..++.|++|++++|.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++|.+..+|.... ++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 4566788889999999888877 68888999999999999988887 8889999999999998888775333 889999
Q ss_pred eccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeec
Q 038220 641 YFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 641 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
++++|... .++ .+..+++|+.|++.++... .++. ++.+++|+.|++++|..... ..+..+++|+.|++++|
T Consensus 112 ~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~-~~~~-l~~l~~L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 112 FLDNNELR-DTD-SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ECCSSCCS-BSG-GGTTCTTCCEEECTTSCCC-BCGG-GGGCTTCCEEECTTSCCCBC----TTSTTCCCCCEEEEEEE
T ss_pred EccCCccC-CCh-hhcCcccccEEECCCCcCC-CChH-HccCCCCCEEECCCCcCcch----HHhccCCCCCEEeCCCC
Confidence 99988766 444 5888899999988887433 3343 77777888888777764322 23444444444444443
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=1.7e-10 Score=126.38 Aligned_cols=295 Identities=14% Similarity=0.083 Sum_probs=180.6
Q ss_pred CCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCC------CCceEEEEeCCCCCHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH------FDCCAWAYVSQEYRKWEI 236 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~v~~~~~~~~~ 236 (866)
+..++||+++++++..++... ....+.+.|+|++|+||||+|+.+++. .... --..+|+.+....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 478999999999999998542 234568999999999999999999974 2111 123678888888888888
Q ss_pred HHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCChhh----HHHHH---hhCCCC--CCCcEEEEE
Q 038220 237 LQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEKEA----WDDLK---AVFPDA--KNGSRIIFT 305 (866)
Q Consensus 237 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~----~~~l~---~~l~~~--~~gs~iivT 305 (866)
+..++.++.... ........++...+.+.+. +++.+|||||++.... .+.+. ...... ..+..+|.|
T Consensus 96 ~~~l~~~l~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 96 ASAIAEAVGVRV--PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHSCCC--CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHhCCCC--CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 999998885531 1122345666667777763 4688999999986432 22222 222211 445678888
Q ss_pred ecchhhhhcc-----CCCC-CCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---Cchh-HHHHH
Q 038220 306 TRFKDVAVYA-----DPGS-PPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCG---GLPL-AIVVL 375 (866)
Q Consensus 306 tR~~~v~~~~-----~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~i 375 (866)
|+........ .... ..+.+.+++.++..+++...+...... ...++ +..+.+++.++ |.|- ++..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP-GVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT-TTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC-CCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 8765321111 1111 368999999999999998875321000 11222 34566777776 9994 33332
Q ss_pred hhhcc-----C-CCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhc-cCCCCcccchHHHHHHH-
Q 038220 376 GGLLS-----S-KEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIG-LFPEDFEIAARKLILLW- 447 (866)
Q Consensus 376 ~~~l~-----~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a-~fp~~~~i~~~~li~~W- 447 (866)
..... . ..-+.+.+..+++... ...+.-++..||++.+..+..++ ++.....+....+.+..
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 22211 1 1224666666655432 12345567888888888777666 44322244444333322
Q ss_pred ---HHcCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 448 ---VAEGFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 448 ---~aeg~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
-..| . .......+..+++.|...++++...
T Consensus 320 ~~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 1122 1 1123567889999999999999864
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=2.6e-14 Score=163.15 Aligned_cols=121 Identities=17% Similarity=0.018 Sum_probs=94.8
Q ss_pred CCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECCCCCccccEEE
Q 038220 710 GLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSSGGFSQLQFLK 789 (866)
Q Consensus 710 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 789 (866)
.|+.|++++|.+ ..+|. +..+++|+.|+|++|.++ ..+..++.+++|+.|+|++|.+.+ ++ .++++++|+.|+
T Consensus 442 ~L~~L~Ls~n~l--~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDL--TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCC--SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCC--CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEE
Confidence 588999988864 34676 777889999999999887 556788999999999999998875 44 788999999999
Q ss_pred eecCCCCcce-EEccCcccccceeeEeecccCCccCCCc----cCCCCCCEEEE
Q 038220 790 LSNLCYLERW-RIEEGAMCNLRRLEIIECMRLKIVPSGL----WPLTTLSNLKL 838 (866)
Q Consensus 790 l~~~~~l~~~-~~~~~~~p~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l 838 (866)
|++|...... |..++.+++|+.|++++|+. +.+|... ..+++|+.|++
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 9988654433 67778899999999999874 4444433 23788988863
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.7e-12 Score=124.76 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=89.0
Q ss_pred CeeEEEEecCCccccCcc-cccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALIDS-SIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
+.|+.|++++|.+..+|. .+..+++|++|+|++|.++.+ |..+..+.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 457777777777765554 567777777777777777765 56677777777777777777777655 466777777777
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
++|......|..+..+++|+.|++.++......+..+..+++|+.|++.+|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77776644456667777777777777644444444466667777777776653
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=2.9e-12 Score=138.64 Aligned_cols=124 Identities=19% Similarity=0.146 Sum_probs=70.2
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccccc-cc-CCCCccEEecCCCccccccc-cccccccccEEeccCc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSS-MG-NLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEF 645 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~-~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 645 (866)
++++++++.+..+|..+. ..+++|+|++|.++.+|.. +. ++.+|++|+|++|.+..++. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 2466666666666666543 33 56666666666666666653 3666666666666666
Q ss_pred cccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 646 REMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 646 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
......+..+..+++|+.|++.++......+..+..+++|+.|++++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 6552233345566666666665553333323334555555555555544
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=9.2e-12 Score=124.18 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=64.8
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCccccc-cccccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 646 (866)
+.++++++.+..+|..+. .+|+.|++++|.++.+|. .+..+.+|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777777777776654 578888888888877765 677778888888888876666 5567777777777777776
Q ss_pred ccccCCCC-CCCCCCCceecce
Q 038220 647 EMVVNPPA-DASLPNLQTLLGI 667 (866)
Q Consensus 647 ~~~~~p~~-~~~l~~L~~L~~~ 667 (866)
.. .+|.. +..+++|+.|++.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECC
T ss_pred CC-ccCHhHccCCCCCCEEECC
Confidence 55 44432 2334444444333
No 124
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=8.4e-11 Score=128.73 Aligned_cols=296 Identities=15% Similarity=0.142 Sum_probs=175.2
Q ss_pred CCCCeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCccccCCC---CceEEEEeCCCCCHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF---DCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~ 238 (866)
.+..++||+++++.+.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3478999999999999998752 233568999999999999999999983 33322 2467777766666677777
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEecCCCh------hhHHHHHhhCCC-CCCCcEEEEEecch
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQ--ERRFIIVLDDIWEK------EAWDDLKAVFPD-AKNGSRIIFTTRFK 309 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~iivTtR~~ 309 (866)
.++..+... . ........+....+.+.+. +++.+||+|+++.. +.+..+...+.. ...+..+|+||+..
T Consensus 96 ~i~~~l~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 96 DLLESLDVK-V-PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHTTTTSCC-C-CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHhCCC-C-CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 776665432 1 1122234566666666665 45899999998653 233444433321 23356678888765
Q ss_pred hhhhccCC------CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcC---CchhHHHHHh-hhc
Q 038220 310 DVAVYADP------GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCG---GLPLAIVVLG-GLL 379 (866)
Q Consensus 310 ~v~~~~~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~i~-~~l 379 (866)
........ ....+.+++++.++..+++...+...... .... .+....+++.++ |.|..+..+. ...
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP-GVLP---DNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS-SCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC-CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43222211 11379999999999999998765321100 1222 345566777776 9998443322 221
Q ss_pred c-----C-CCCCHHHHHHHHHhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccCCC-C-cccchHHHHHHH--HH
Q 038220 380 S-----S-KEATYSEWLKVLQSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLFPE-D-FEIAARKLILLW--VA 449 (866)
Q Consensus 380 ~-----~-~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~-~-~~i~~~~li~~W--~a 449 (866)
. . ..-+.+.+..+++... ...+.-++..+|++.+..+..++...+ + ..+....+.... ++
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~ 319 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNIC 319 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 1 1 1224555555544332 234556677888888887777764221 1 123333332211 11
Q ss_pred c--CcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 038220 450 E--GFVQPRGIEPLEDVAEDYLEELVGRSMVEPAS 482 (866)
Q Consensus 450 e--g~i~~~~~~~~e~~~~~~l~~L~~~~ll~~~~ 482 (866)
+ | +. .........+++.|...++++...
T Consensus 320 ~~~g-~~----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 320 KKLG-VE----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHT-CC----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhcC-CC----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1 2 11 112456788999999999998754
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=123.12 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccccc--cccCCCCccEEecCCCccccccc-cccccccccEEeccCc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPS--SMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEF 645 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~ 645 (866)
+.++++++.+..+|..+. ..+++|+|++|.++.++. .+.++++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467777777776776553 245677777777776632 35667777777777776666554 4666666666666666
Q ss_pred ccc
Q 038220 646 REM 648 (866)
Q Consensus 646 ~~~ 648 (866)
...
T Consensus 92 ~l~ 94 (220)
T 2v70_A 92 RLE 94 (220)
T ss_dssp CCC
T ss_pred ccC
Confidence 544
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=122.93 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=101.3
Q ss_pred eeEEEEecCCccccCc--ccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 567 LLQVLDLEGVYMALID--SSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
.+++|++++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4578888888887663 347888888999998888887765 688888889999988877777654 778888889988
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
++|......|..+..+++|+.|++.++......+..+..+++|+.|++++|.+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 88887755577788888888888888755555555577788888888887764
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.4e-12 Score=153.76 Aligned_cols=124 Identities=27% Similarity=0.162 Sum_probs=104.1
Q ss_pred CccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccccccc
Q 038220 557 PVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQ 636 (866)
Q Consensus 557 ~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~ 636 (866)
..+..+..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..+++|.+|++|+|++|.+..+|..+..|++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34567888899999999999999999888899999999999999999999999999999999999988899999999999
Q ss_pred ccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhcc
Q 038220 637 LKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDK 681 (866)
Q Consensus 637 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~ 681 (866)
|++|++++|... .+|..++.|++|++|++.++.....++..+..
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999776 88888999999999999888666666654443
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=1.4e-11 Score=123.76 Aligned_cols=128 Identities=23% Similarity=0.234 Sum_probs=59.1
Q ss_pred CeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
+.|++|++++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 3444555555544433 33344455555555555555444432 34455555555555544444433 344555555555
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
++|... .+|..+..+++|++|++.++......+..+..+++|+.|++.+|.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 554443 444444444455555444443222222224445555555555544
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=5.6e-12 Score=120.05 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCceEEEecCC--C-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcc-ccccccCCCCccEEec
Q 038220 544 SRVRSLLFFDI--S-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKM-LPSSMGNLFNLQSLDL 619 (866)
Q Consensus 544 ~~lr~L~~~~~--~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l 619 (866)
++++.|.+.++ . ..++..+..++.|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44444444444 1 13333344444455555555444433 344444455555555544443 3444444445555555
Q ss_pred CCCcccccc--ccccccccccEEeccCcccc
Q 038220 620 SSTLVDPIP--LVIWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 620 ~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~ 648 (866)
++|.+..+| ..+..+++|++|++++|...
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 544444443 34444444555555444433
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.6e-11 Score=116.84 Aligned_cols=130 Identities=18% Similarity=0.117 Sum_probs=111.1
Q ss_pred CCCeeEEEEecCCccc--cCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccc-ccccccccccccEE
Q 038220 564 EYKLLQVLDLEGVYMA--LIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDP-IPLVIWKMQQLKHV 640 (866)
Q Consensus 564 ~~~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 640 (866)
..+.|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3477999999999987 8998899999999999999999988 788999999999999998877 77777789999999
Q ss_pred eccCccccccCC--CCCCCCCCCceecceeecCCcchh---HhhccccCCCeEEEEcccc
Q 038220 641 YFSEFREMVVNP--PADASLPNLQTLLGICICETSCVE---QGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 641 ~l~~~~~~~~~p--~~~~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 695 (866)
++++|... .+| ..+..+++|+.|++.++......+ ..+..+++|+.|++.+|..
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 99999776 544 678899999999999885544333 3588899999999998864
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=7.9e-12 Score=135.20 Aligned_cols=174 Identities=22% Similarity=0.144 Sum_probs=114.7
Q ss_pred ceEEEeeCCCCccccccccCCCCccEEecCCCccccccccc-c-ccccccEEeccCccccccCCCCCCCCCCCceeccee
Q 038220 591 LRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVI-W-KMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGIC 668 (866)
Q Consensus 591 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i-~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~ 668 (866)
-+.++++++.++.+|..+. .+++.|+|++|.+..++... . .+++|++|++++|......+..+..+++|++|++.+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3689999999999998765 46899999999999887664 4 899999999999988744456688999999999888
Q ss_pred ecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCcc----CCCCCceEEEEEee
Q 038220 669 ICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQ----NFPPNLTELSLQFC 744 (866)
Q Consensus 669 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~----~~~~~L~~L~L~~~ 744 (866)
+......+..+..+++|+.|++++|.+... .+..+..+++|+.|+|++|.+. .+|... ..+++|+.|+|++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVV--DRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEE--CHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCC
Confidence 855444444467777888888777764221 1233455566666666655432 222221 23455666666666
Q ss_pred cCCCCCccccCCCCC--CCeeEEecccc
Q 038220 745 FLTEDPLKELEKLPN--LRVLKLKQSSY 770 (866)
Q Consensus 745 ~l~~~~~~~l~~l~~--L~~L~L~~~~~ 770 (866)
.+.......+..+++ |+.|+|++|.+
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 555444344444554 25555555443
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=3.8e-11 Score=120.57 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=113.1
Q ss_pred CCCceEEEecCC--CCCccccccCCCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCcccccc-ccCCCCccEEe
Q 038220 543 SSRVRSLLFFDI--SEPVGSILEEYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLD 618 (866)
Q Consensus 543 ~~~lr~L~~~~~--~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~ 618 (866)
.++++.|.+.++ ....+..|..++.|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+.+|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 478999999988 455567889999999999999999988854 68999999999999999988765 68999999999
Q ss_pred cCCCccccccccccccccccEEeccCccccccCC-CCCCCCCCCceecceeecCC
Q 038220 619 LSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNP-PADASLPNLQTLLGICICET 672 (866)
Q Consensus 619 l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~ 672 (866)
+++|.+..+|..+..+++|++|++++|... .+| ..+..+++|+.|++.++...
T Consensus 119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 999999999999999999999999999877 454 55888999999998887543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=4.6e-12 Score=117.96 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=44.1
Q ss_pred CeeEEEEecCCccc--cCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccc-ccccccccccccEEec
Q 038220 566 KLLQVLDLEGVYMA--LIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDP-IPLVIWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l 642 (866)
+.|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555554 5555555555555555555555554 445555555555555554444 4444444555555555
Q ss_pred cCccc
Q 038220 643 SEFRE 647 (866)
Q Consensus 643 ~~~~~ 647 (866)
++|..
T Consensus 96 s~N~i 100 (149)
T 2je0_A 96 SGNKI 100 (149)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 55543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.2e-11 Score=115.05 Aligned_cols=123 Identities=21% Similarity=0.237 Sum_probs=103.6
Q ss_pred CCCceEEEecCC--C-CCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcc-ccccccCCCCccEEe
Q 038220 543 SSRVRSLLFFDI--S-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKM-LPSSMGNLFNLQSLD 618 (866)
Q Consensus 543 ~~~lr~L~~~~~--~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 618 (866)
.++++.|.+.++ . ...+..+..++.|++|++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467888888877 2 35667788999999999999999877 778999999999999999997 888888899999999
Q ss_pred cCCCcccccc--ccccccccccEEeccCccccccCCC----CCCCCCCCceecce
Q 038220 619 LSSTLVDPIP--LVIWKMQQLKHVYFSEFREMVVNPP----ADASLPNLQTLLGI 667 (866)
Q Consensus 619 l~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~~ 667 (866)
+++|.+..+| ..+..+++|++|++++|... ..|. .++.+++|+.|++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 9999888875 78999999999999999776 4544 46677777777653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.3e-11 Score=116.74 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=72.0
Q ss_pred ccCCCeeEEEEecCCccccCcccccCCC-CceEEEeeCCCCccccccccCCCCccEEecCCCccccccccc-cccccccE
Q 038220 562 LEEYKLLQVLDLEGVYMALIDSSIGNLI-HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVI-WKMQQLKH 639 (866)
Q Consensus 562 ~~~~~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~ 639 (866)
+..+..|+.|++++|.+..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445556666666666655543 33333 666666666666655 45566666666666666666665444 56666666
Q ss_pred EeccCccccccCCC--CCCCCCCCceecceeecCCcchhH----hhccccCCCeEEEEcccc
Q 038220 640 VYFSEFREMVVNPP--ADASLPNLQTLLGICICETSCVEQ----GLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 640 L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 695 (866)
|++++|... .+|. .++.+++|+.|++.++... .++. .+..+++|+.|+++.+..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666543 3443 4445555555555554322 1111 255566666666666543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=2.7e-11 Score=116.22 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=109.5
Q ss_pred CCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccc-cCCCCccEE
Q 038220 540 TRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSM-GNLFNLQSL 617 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L 617 (866)
...+++++.|.+.++ -..++......+.|++|++++|.+..+ ..+..+++|++|++++|.++.+|+.+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 456788999999887 223344444445999999999999877 67899999999999999999998765 899999999
Q ss_pred ecCCCccccccc--cccccccccEEeccCccccccCCCC----CCCCCCCceecceeec
Q 038220 618 DLSSTLVDPIPL--VIWKMQQLKHVYFSEFREMVVNPPA----DASLPNLQTLLGICIC 670 (866)
Q Consensus 618 ~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~~~~~~ 670 (866)
++++|.+..+|. .+..+++|++|++++|... ..|.. +..+++|+.|++..+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999987 7899999999999999887 67764 7889999999998874
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=4.2e-11 Score=116.56 Aligned_cols=125 Identities=20% Similarity=0.174 Sum_probs=85.3
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccccc--ccCCCCccEEecCCCccccc-cccccccccccEEeccCc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSS--MGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSEF 645 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 645 (866)
++++++++.+..+|..+.. +|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765543 677777777777776653 67777777777777766666 556777777777777777
Q ss_pred cccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 646 REMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 646 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
......|..+..+++|++|++.++......+..+..+++|+.|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 76644444567777777777777655544455566677777777776654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=9e-11 Score=114.18 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=84.9
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccc-cccccccccEEeccCccc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 647 (866)
++++++++.+..+|..+. .+|++|++++|.++.+|..+.++.+|++|++++|.+..++. .+..+++|++|++++|..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456777777777776543 46777777777777777777777777777777776666653 467777777777777776
Q ss_pred cccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 648 MVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 648 ~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
....|..+..+++|+.|++.++......+..+..+++|+.|++.+|..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 644444567777777777777644433333466677777777777653
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=4.7e-12 Score=149.30 Aligned_cols=150 Identities=18% Similarity=0.105 Sum_probs=94.2
Q ss_pred CCceEEEecCC-CCCccccccCCCeeEE-----EEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEE
Q 038220 544 SRVRSLLFFDI-SEPVGSILEEYKLLQV-----LDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSL 617 (866)
Q Consensus 544 ~~lr~L~~~~~-~~~~~~~~~~~~~Lr~-----L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 617 (866)
++++.|.+.++ ....+..+.....|+. ++++++.+...|..+..+..|+.|+|++|.+..+|..+.++.+|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 45667777655 1112222222222333 33333444455677889999999999999999999999999999999
Q ss_pred ecCCCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 618 DLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 618 ~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
+|++|.+..+|..+..+++|++|+|++|... .+|..++.|++|++|++.++.. ..+|..++.+++|+.|+|++|.+
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCC
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCcc
Confidence 9999988899999999999999999999887 8898899999999999888844 35555577888888888887765
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=4.2e-10 Score=114.48 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=118.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
..+++||+..++.+..++..+.. ...+.|+|++|+||||+|+.+++.......+.. ..+. .... ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~---~~~~-~~~~~~~~ 93 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG---VCDN-CREIEQGR 93 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC-CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCS---CSHH-HHHHHTTC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCc---ccHH-HHHHhccC
Confidence 45799999999999999987542 347899999999999999999874211111100 0000 0000 00000000
Q ss_pred hcC--CCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCC--hhhHHHHHhhCCCCCCCcEEEEEecchhh-hhc
Q 038220 245 LGL--GKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWE--KEAWDDLKAVFPDAKNGSRIIFTTRFKDV-AVY 314 (866)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~ 314 (866)
... ..........+.+. .+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+.... ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 000 00000001111121 122221 24679999999965 35667777666655667888888875432 111
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhc
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLL 379 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l 379 (866)
.......+++.+++.++..+++...+..... ..+ .+....|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1111257899999999999999887754321 112 4567889999999999887766443
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=1.4e-10 Score=132.34 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=46.9
Q ss_pred eEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccc
Q 038220 568 LQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 647 (866)
|++|++++|.+..+|. ++++++|++|+|++|.++.+|..++++++|++|+|++|.+..+| .+..+++|++|++++|..
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 4444444444444443 44444555555555554444444445555555555544444444 444455555555544444
Q ss_pred cccC-CCCCCCCCCCceecceee
Q 038220 648 MVVN-PPADASLPNLQTLLGICI 669 (866)
Q Consensus 648 ~~~~-p~~~~~l~~L~~L~~~~~ 669 (866)
.... |..++.+++|+.|++.++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCcHHHhcCCCCCEEEecCC
Confidence 3221 444444444444444433
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.4e-10 Score=123.65 Aligned_cols=283 Identities=13% Similarity=0.065 Sum_probs=163.0
Q ss_pred CCceEEEecCC-CCCccccccC-CCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccC--------CC
Q 038220 544 SRVRSLLFFDI-SEPVGSILEE-YKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGN--------LF 612 (866)
Q Consensus 544 ~~lr~L~~~~~-~~~~~~~~~~-~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~--------l~ 612 (866)
.+++.|.+.+. .......+.. ++.|++|||++|.+......-+.++.++++.+..+. +| ..+.. |.
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECT
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccC
Confidence 45566666554 1100112222 677888888888775111111223334555555542 33 23445 88
Q ss_pred CccEEecCCCccccccc-cccccccccEEeccCccccccCCCCCCCCCCCceecceeecC----CcchhHhhccccCCC-
Q 038220 613 NLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICE----TSCVEQGLDKLLNLR- 686 (866)
Q Consensus 613 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~----~~~~~~~l~~l~~L~- 686 (866)
+|+.|+|.+ .+..++. .+..+++|+.|++..+......+..+..+.++..+....... ...-...+..+.+|+
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 888888887 6777764 377888888888888766534444566666665554332100 000011133455555
Q ss_pred eEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEe
Q 038220 687 ELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLK 766 (866)
Q Consensus 687 ~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 766 (866)
.+.+..... -...+...-....++..+.+.++-. ..........+++|++|+|.+|.+.......+..|++|+.|+|.
T Consensus 181 ~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 181 TIQVGAMGK-LEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEECTTCC-HHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEecCCCc-HHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 344433221 1112222222345666776665310 01111111236789999999888776666678899999999997
Q ss_pred ccccCCCeE-EECCCCCcccc-EEEeecCCCCcceE-EccCcccccceeeEeecccCCccCC-CccCCCCCCEEEE
Q 038220 767 QSSYLGKEM-VSSSGGFSQLQ-FLKLSNLCYLERWR-IEEGAMCNLRRLEIIECMRLKIVPS-GLWPLTTLSNLKL 838 (866)
Q Consensus 767 ~~~~~~~~~-~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~~p~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 838 (866)
+| +. .+ ...+.++++|+ .|.+.+ .+..+. ..+..|++|+.|++..+. ++.++. .+.+|++|+.|+.
T Consensus 259 ~n-i~--~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LK--TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CC--EECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred cc-cc--eehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 65 33 23 23567889999 999986 455553 346678999999987664 555544 6889999998863
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=5.8e-10 Score=108.43 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=92.1
Q ss_pred eeEEEEecCCccccCccc--ccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 567 LLQVLDLEGVYMALIDSS--IGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 567 ~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
.|++|++++|.+..++.. +.++++|++|+|++|.++.+ |..+..+.+|++|++++|.+..++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999877753 88999999999999999877 67899999999999999988887755 788999999999
Q ss_pred cCccccccCCCCCCCCCCCceecceeecCC
Q 038220 643 SEFREMVVNPPADASLPNLQTLLGICICET 672 (866)
Q Consensus 643 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~ 672 (866)
++|......|..+..+++|++|++.++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999888667888999999999998877443
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=3.7e-09 Score=105.68 Aligned_cols=184 Identities=15% Similarity=0.073 Sum_probs=114.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|+++.++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+. ..+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR-HKIKE 91 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH-HHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH-HHHHH
Confidence 4578999999999999998764 23489999999999999999987311 12222 23334433333222221 11111
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchhh-hhccCCCCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKDV-AVYADPGSP 320 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~~~~ 320 (866)
...... .-.+++.+||+||++.. ...+.+...+.....+..+|+||+.... .........
T Consensus 92 ~~~~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 92 FARTAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHTSCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HhcccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111000 00257889999999764 3455565555544567788888876531 111111124
Q ss_pred CeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 321 PYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
.+.+.+++.++..+++.+.+...+. ..+ .+....+++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV---KIT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC---CBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999887643221 111 356778889999999865443
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=1.3e-11 Score=121.02 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=61.8
Q ss_pred ccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCccccccccccccccccEEeccCccccccCCCCCCCC
Q 038220 579 ALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASL 658 (866)
Q Consensus 579 ~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l 658 (866)
..+|..++++++|++|++++|.++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|... .+| .++.+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-ccccC
Confidence 344445555566666666665555555 555556666666665555555555555556666666555443 233 34445
Q ss_pred CCCceecceeecCCcchh-HhhccccCCCeEEEEcccc
Q 038220 659 PNLQTLLGICICETSCVE-QGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 659 ~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 695 (866)
++|+.|++.++....... ..+..+++|+.|++.+|..
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 555555555543222111 2366677777777776654
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=7.4e-12 Score=122.76 Aligned_cols=128 Identities=22% Similarity=0.193 Sum_probs=102.1
Q ss_pred cccccCCCeeEEEEecCCccccCcccccCCCCceEEEeeCCCCccccccccCCCCccEEecCCCcccccccccccccccc
Q 038220 559 GSILEEYKLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQQLK 638 (866)
Q Consensus 559 ~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 638 (866)
+..+..++.|++|++++|.+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++|.+..+| .+..+++|+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 347788899999999999988888 888999999999999999999988888899999999999888887 688999999
Q ss_pred EEeccCccccccCC--CCCCCCCCCceecceeecCCcchhH----------hhccccCCCeEE
Q 038220 639 HVYFSEFREMVVNP--PADASLPNLQTLLGICICETSCVEQ----------GLDKLLNLRELG 689 (866)
Q Consensus 639 ~L~l~~~~~~~~~p--~~~~~l~~L~~L~~~~~~~~~~~~~----------~l~~l~~L~~L~ 689 (866)
+|++++|... .++ ..+..+++|++|++.++......+. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999998765 333 3577899999999887744322221 255566666654
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=1.9e-09 Score=104.77 Aligned_cols=104 Identities=24% Similarity=0.241 Sum_probs=91.3
Q ss_pred CeeEEEEecCCccccCcccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCccccccc-cccccccccEEecc
Q 038220 566 KLLQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFS 643 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 643 (866)
+.|++|++++|.+..+|..+.++++|++|+|++|.|+.++ ..+..+.+|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5789999999999999989999999999999999999887 468999999999999998888875 58899999999999
Q ss_pred CccccccCCC-CCCCCCCCceecceeec
Q 038220 644 EFREMVVNPP-ADASLPNLQTLLGICIC 670 (866)
Q Consensus 644 ~~~~~~~~p~-~~~~l~~L~~L~~~~~~ 670 (866)
+|... .+|. .+..+++|+.|++.++.
T Consensus 111 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 99887 5554 57889999999988763
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=2e-09 Score=103.12 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=58.7
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCcccccccc-ccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 646 (866)
+.++++++.+..+|..+. .+|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344455555444443322 3455555555555544432 34555555555555554444433 3455555555555554
Q ss_pred ccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEccc
Q 038220 647 EMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDL 694 (866)
Q Consensus 647 ~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 694 (866)
.....+..+..+++|++|++.++......+..+..+++|+.|++.+|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 442222223455555555555443332222223445555555555554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=5.3e-08 Score=105.94 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=146.9
Q ss_pred CCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecC
Q 038220 544 SRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLS 620 (866)
Q Consensus 544 ~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~ 620 (866)
..+.++.+.+. .......|.++ .|+.+.+..+ +..++.. +.+ ..|+.+.+.+ .++.++ ..+.+|.+|+.+++.
T Consensus 113 ~~l~~i~ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPNSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCTTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECCccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 44555555444 22223445554 4777776654 4444432 333 3577777765 555554 456677777777777
Q ss_pred CCccccccccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHH
Q 038220 621 STLVDPIPLVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEA 700 (866)
Q Consensus 621 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 700 (866)
.+.+..+|.......+|+.+.+..+ ....-...+.++++|+.+.+... ....-.
T Consensus 189 ~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~------------------------ 242 (401)
T 4fdw_A 189 KTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ------------------------ 242 (401)
T ss_dssp TSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT------------------------
T ss_pred CCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc------------------------
Confidence 7777777766555677777776643 21122233455666665554322 100000
Q ss_pred HHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCC-----CCCccccCCCCCCCeeEEeccccCCCeE
Q 038220 701 LCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLT-----EDPLKELEKLPNLRVLKLKQSSYLGKEM 775 (866)
Q Consensus 701 l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 775 (866)
.++.. .+|+.+.+..+- ..--...+..+++|+.+.+.++.+. ......+..|++|+.+.|. +++. .+
T Consensus 243 --~aF~~-~~L~~i~lp~~i--~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~--~I 314 (401)
T 4fdw_A 243 --EAFRE-SGITTVKLPNGV--TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR--IL 314 (401)
T ss_dssp --TTTTT-CCCSEEEEETTC--CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC--EE
T ss_pred --ccccc-CCccEEEeCCCc--cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE--EE
Confidence 11222 355555553321 1111334555677888888776543 1233457788999999995 3333 22
Q ss_pred -EECCCCCccccEEEeecCCCCcceEE-ccCcccccceeeEeecccCCccCCCccCCC-CCCEEEEeCCC
Q 038220 776 -VSSSGGFSQLQFLKLSNLCYLERWRI-EEGAMCNLRRLEIIECMRLKIVPSGLWPLT-TLSNLKLGYMP 842 (866)
Q Consensus 776 -~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~ 842 (866)
...+.+|++|+.+.|..+ +..+.. .+..+ +|+.|.+.+|......+..+..++ ++..|.+-.+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 235678899999999653 444432 34566 999999998864443344566664 78899998765
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=9.6e-09 Score=98.38 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=87.7
Q ss_pred CeeEEEEecCCccccCccc-ccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCcccccccc-ccccccccEEec
Q 038220 566 KLLQVLDLEGVYMALIDSS-IGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYF 642 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l 642 (866)
+.|+.|+++++.+..+|.. +..+++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 5788999999988877654 68889999999999999888764 58899999999999988888765 578899999999
Q ss_pred cCccccccCCCC-CCCCCCCceecceeecCCcch
Q 038220 643 SEFREMVVNPPA-DASLPNLQTLLGICICETSCV 675 (866)
Q Consensus 643 ~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~ 675 (866)
++|... .+|.. +..+++|++|++.++......
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 108 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 998776 55554 577899999988887544433
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.2e-08 Score=108.28 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=113.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.. ....+. ..+++..+..... ..++++++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 95 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHEL-LGRSYADGVLELNASDDRGI-DVVRNQIKH 95 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHH-HGGGHHHHEEEECTTSCCSH-HHHHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHh-cCCcccCCEEEecCccccCh-HHHHHHHHH
Confidence 45799999999999999987642 338999999999999999998731 111121 1334433332221 222222222
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPGS 319 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~ 319 (866)
+..... .+ .+++.++|+||++.. ..++.+...+.....++.+|+||+... +........
T Consensus 96 ~~~~~~-----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 96 FAQKKL-----------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHBCC-----------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHhccc-----------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 221000 01 346889999999764 344445555444455678888886543 111111222
Q ss_pred CCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh-HHHHHh
Q 038220 320 PPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL-AIVVLG 376 (866)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~i~ 376 (866)
..+++.+++.++..+++...+...+. ..+ .+....|++.++|.|. |+..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV---KYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC---CBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999887643221 111 3567889999999995 444443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=8e-09 Score=98.03 Aligned_cols=101 Identities=21% Similarity=0.202 Sum_probs=80.9
Q ss_pred eEEEEecCCccccCcccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-ccccccccEEeccCc
Q 038220 568 LQVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEF 645 (866)
Q Consensus 568 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 645 (866)
.++++++++.+..+|..+. .+|++|+|++|.|+.+ |..+.++.+|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678999998888887664 7899999999999887 56688899999999999988888876 478999999999998
Q ss_pred cccccCCC-CCCCCCCCceecceeecC
Q 038220 646 REMVVNPP-ADASLPNLQTLLGICICE 671 (866)
Q Consensus 646 ~~~~~~p~-~~~~l~~L~~L~~~~~~~ 671 (866)
... .+|. .+..+++|+.|++.++..
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence 776 4544 467777777777766643
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=9.9e-09 Score=97.71 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=75.7
Q ss_pred EEEEecCCccccCcccccCCCCceEEEeeCCCCccc-cccccCCCCccEEecCCCcccccccc-ccccccccEEeccCcc
Q 038220 569 QVLDLEGVYMALIDSSIGNLIHLRYLDLRKTWLKML-PSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEFR 646 (866)
Q Consensus 569 r~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 646 (866)
+.++++++.+..+|..+. .+|++|+|++|.++.+ |..+.++.+|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 577888888888887664 6888888888888877 45678888888888888888888766 4688888888888887
Q ss_pred ccccCCCC-CCCCCCCceecceeec
Q 038220 647 EMVVNPPA-DASLPNLQTLLGICIC 670 (866)
Q Consensus 647 ~~~~~p~~-~~~l~~L~~L~~~~~~ 670 (866)
.. .+|.. +..+++|++|++.++.
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred cc-eeCHHHhccccCCCEEEeCCCC
Confidence 66 45544 6777777777776663
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.75 E-value=7.1e-08 Score=102.41 Aligned_cols=277 Identities=16% Similarity=0.072 Sum_probs=143.7
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
-.+++|++..++.+..++... ......+.|+|++|+|||++|+.+++. ... ...++..+......+
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHH------
Confidence 357999999999888887631 122457889999999999999999873 221 123443333222111
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--hHHHHHhhCCCC------------------CCCcE
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--AWDDLKAVFPDA------------------KNGSR 301 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~gs~ 301 (866)
+...+... ..+..+|++|+++... ..+.+...+... ..+..
T Consensus 80 ------------------l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 80 ------------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ------------------HHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ------------------HHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11111110 1356789999997642 333343332211 02345
Q ss_pred EEEEecchh-hhhccCCC-CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhc
Q 038220 302 IIFTTRFKD-VAVYADPG-SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLL 379 (866)
Q Consensus 302 iivTtR~~~-v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l 379 (866)
+|.||.... +....... ...+.+.+++.++..+++...+..... ..+ .+....+++.++|.|-.+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666665432 21111111 147899999999999998887654321 122 4667889999999998776655433
Q ss_pred cC------C-CCCHHHHHHHHHhhhhhccC-CC--hhHHHHHHHhcCCCCCchhhHHhHhccCCCCcccchHHHHHHHHH
Q 038220 380 SS------K-EATYSEWLKVLQSVQWQLNL-NP--AKCMDILKLSYQDLPYYLKPCFLYIGLFPEDFEIAARKLILLWVA 449 (866)
Q Consensus 380 ~~------~-~~~~~~w~~~l~~~~~~~~~-~~--~~~~~~l~~sy~~L~~~~k~cf~~~a~fp~~~~i~~~~li~~W~a 449 (866)
.. . .-+.+....++......... .. ..+...+...|..=|.....+-..+++-+.. -...+-.+-+.
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~t---l~~~l~~~~i~ 291 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGT---LEEVHEPYLIR 291 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHH---HHHHTHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHH---HHHHHhHHHHH
Confidence 21 1 12344454444433211100 00 1122222222322222333333333332111 01112223456
Q ss_pred cCcccC-CCCCCHHHHHHHHHH-HHhhCCcccc
Q 038220 450 EGFVQP-RGIEPLEDVAEDYLE-ELVGRSMVEP 480 (866)
Q Consensus 450 eg~i~~-~~~~~~e~~~~~~l~-~L~~~~ll~~ 480 (866)
.|++.. ..+....+.+..||. ++.+|+|||+
T Consensus 292 ~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 788753 345566778888887 8888888875
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=2.6e-08 Score=94.81 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=80.8
Q ss_pred eEEEecCC-CCCccccccCCCeeEEEEecCCccccC-cccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCCc
Q 038220 547 RSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALI-DSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSSTL 623 (866)
Q Consensus 547 r~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 623 (866)
+.+.+.++ -..+|..+ .+.|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +.++.+|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 34555544 12233322 26789999999999877 56789999999999999999999876 5899999999999999
Q ss_pred ccccccc-ccccccccEEeccCcccc
Q 038220 624 VDPIPLV-IWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 624 ~~~lp~~-i~~l~~L~~L~l~~~~~~ 648 (866)
+..+|.. +..+++|++|++++|...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999876 889999999999998764
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=5.1e-08 Score=103.71 Aligned_cols=257 Identities=11% Similarity=-0.000 Sum_probs=158.3
Q ss_pred CCCceEEEecCCC-CCccccccCCCeeEEEEecCCccccCcccccC--------CCCceEEEeeCCCCccccc-cccCCC
Q 038220 543 SSRVRSLLFFDIS-EPVGSILEEYKLLQVLDLEGVYMALIDSSIGN--------LIHLRYLDLRKTWLKMLPS-SMGNLF 612 (866)
Q Consensus 543 ~~~lr~L~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~i~~--------l~~L~~L~l~~~~i~~lp~-~i~~l~ 612 (866)
+++|+.|.+.++. ..+......++.++.+.+..+.+. +..+.+ +.+|+.|+|.+ .++.+++ .+..|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 7789999888762 100111112222444555544332 123455 89999999998 8888875 588899
Q ss_pred CccEEecCCCccccccc-cccccccccEEeccCcccc---cc-CCCCCCCCCCCc-eecceeecCCcchhHhh----ccc
Q 038220 613 NLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFREM---VV-NPPADASLPNLQ-TLLGICICETSCVEQGL----DKL 682 (866)
Q Consensus 613 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~---~~-~p~~~~~l~~L~-~L~~~~~~~~~~~~~~l----~~l 682 (866)
+|+.|+++++.+..++. .+..+.++.++..+..... .. ....+..+.+|+ .+.+. ....++..+ -..
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~---~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG---AMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEEC---TTCCHHHHHHHTTCCG
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEec---CCCcHHHHHhhcccCc
Confidence 99999999987767654 4667777777766552211 01 112233445555 22221 112222211 135
Q ss_pred cCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCC-
Q 038220 683 LNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLR- 761 (866)
Q Consensus 683 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~- 761 (866)
.++..+.+.+.-. ..........+++|++|++..|.+ ..-.+..+..+++|++|+|..+ +.......+..|++|+
T Consensus 202 ~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 202 RDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTNA-TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBCC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCCc-ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 6788888887643 222222233489999999988653 2223345677899999999887 5555556788999999
Q ss_pred eeEEeccccCCCeE-EECCCCCccccEEEeecCCCCcceEE-ccCcccccceee
Q 038220 762 VLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSNLCYLERWRI-EEGAMCNLRRLE 813 (866)
Q Consensus 762 ~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~ 813 (866)
.|.|.+ .+. .+ ...+.+|++|+.|++.++. +..++. .+..+++|+.|+
T Consensus 278 ~l~l~~-~l~--~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVT--AIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCC--EECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEEcc-cce--EEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 999965 443 33 3467899999999997654 444433 456778888775
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=6.6e-09 Score=110.89 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=104.3
Q ss_pred hccccCCCeEEEEcccch-------hHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCc
Q 038220 679 LDKLLNLRELGLHGDLIL-------HEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPL 751 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~-------~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~ 751 (866)
+..+++|+.|.+...... ....+...+..+++|++|+|.++. ...++. +. .++|++|+|..|.+..+..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--Cceecc-cc-CCCCcEEEEecCCCChHHH
Confidence 344556666666433210 011234556677899999998763 123443 22 6799999999988876655
Q ss_pred cccC--CCCCCCeeEEecc--ccCCCe-E-----EECCCCCccccEEEeecCCCCcceE---EccCcccccceeeEeecc
Q 038220 752 KELE--KLPNLRVLKLKQS--SYLGKE-M-----VSSSGGFSQLQFLKLSNLCYLERWR---IEEGAMCNLRRLEIIECM 818 (866)
Q Consensus 752 ~~l~--~l~~L~~L~L~~~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~p~L~~L~l~~c~ 818 (866)
..+. .+|+|+.|+|+.+ .+.+.. + ......||+|++|.|.+|....... .....+|+|+.|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 5554 7899999999632 222211 1 1122469999999999887654321 122468999999998775
Q ss_pred cCC----ccCCCccCCCCCCEEEEeCCCH
Q 038220 819 RLK----IVPSGLWPLTTLSNLKLGYMPF 843 (866)
Q Consensus 819 ~l~----~lp~~l~~l~~L~~L~l~~~~~ 843 (866)
.-. .++.++.++++|+.|++++|+.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 332 2566778899999999999874
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=5.7e-08 Score=92.07 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=86.4
Q ss_pred CceEEEeeCCCCccccccccCCCCccEEecCCCccccc-cccccccccccEEeccCccccccCCCC-CCCCCCCceecce
Q 038220 590 HLRYLDLRKTWLKMLPSSMGNLFNLQSLDLSSTLVDPI-PLVIWKMQQLKHVYFSEFREMVVNPPA-DASLPNLQTLLGI 667 (866)
Q Consensus 590 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~ 667 (866)
..+.++++++.++.+|..+. .+|++|+|++|.+..+ |..+..+++|++|++++|... .+|.. +..+++|++|++.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 35789999999999998774 7999999999998888 556899999999999999887 55554 6899999999999
Q ss_pred eecCCcchhHhhccccCCCeEEEEcccc
Q 038220 668 CICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 668 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
++......+..+..+++|+.|++++|.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 8865555454588889999999998864
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=8e-07 Score=96.61 Aligned_cols=243 Identities=13% Similarity=0.025 Sum_probs=140.7
Q ss_pred CCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCCCccccccccCCCCccEE
Q 038220 540 TRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTWLKMLPSSMGNLFNLQSL 617 (866)
Q Consensus 540 ~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 617 (866)
+..+ +|+.+.+... ...-...|.++ .|+.+.+.. .+..++ ..+.++.+|+.+++.+|.++.+|...-.+.+|+.+
T Consensus 132 F~~~-~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp TTTC-CCSEEECCTTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred cccC-CccEEEeCCCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 3444 6888888765 33334566665 589999986 555555 45889999999999999999998765557899999
Q ss_pred ecCCCccccccc-cccccccccEEeccCccccccCCC-CCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccc
Q 038220 618 DLSSTLVDPIPL-VIWKMQQLKHVYFSEFREMVVNPP-ADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLI 695 (866)
Q Consensus 618 ~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 695 (866)
.+..+ +..++. .+..+.+|+.+.+..+- . .++. .+.+ .+|+.+.+... ....-...+..|++|+.+.+.++..
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~-~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPENV-S-TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTTC-C-EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCCc-c-Ccccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccc
Confidence 99855 666654 57789999999998642 2 3333 3333 56777766322 1111122355566666666655432
Q ss_pred hhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeE
Q 038220 696 LHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEM 775 (866)
Q Consensus 696 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 775 (866)
... .+ ..-.+..+..|++|+.+.|.. .+.......+..|++|+.|.|..+ +. .+
T Consensus 284 ~~~-----------~~-----------~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~--~I 337 (401)
T 4fdw_A 284 NDD-----------PE-----------AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT--QI 337 (401)
T ss_dssp CCC-----------TT-----------CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC--EE
T ss_pred cCC-----------cc-----------cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc--EE
Confidence 100 00 001122344455666666553 233223335566677777777332 22 12
Q ss_pred -EECCCCCccccEEEeecCCCCcceEEccCccc-ccceeeEeec
Q 038220 776 -VSSSGGFSQLQFLKLSNLCYLERWRIEEGAMC-NLRRLEIIEC 817 (866)
Q Consensus 776 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p-~L~~L~l~~c 817 (866)
...+.++ +|+.|.+.++....-....+..+| +++.|.+-.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 1234556 777777776533221112223343 5566665543
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=9.2e-08 Score=101.72 Aligned_cols=185 Identities=19% Similarity=0.141 Sum_probs=112.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC-CCC-ceEEEEeCCCCCHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK-HFD-CCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
-.+++|+++.++.+..++..+. .+.+.|+|++|+||||+|+.+++. ... .+. ..+.+..+..... ..+.+.+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-NVIREKVK 98 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-HTTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-HHHHHHHH
Confidence 3569999999999999998764 334899999999999999999873 211 111 1233332221100 11111111
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchhh-hhccCCCC
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKDV-AVYADPGS 319 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~~~ 319 (866)
..... . ....+++.++|+||++.. ..++.+...+.....++++|+||..... ........
T Consensus 99 ~~~~~-~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 99 EFART-K----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHS-C----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHhh-C----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11100 0 001256889999999754 4556666665545567788888865431 11111111
Q ss_pred CCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhh
Q 038220 320 PPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGG 377 (866)
Q Consensus 320 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~ 377 (866)
..+.+.+++.++..+++...+...+. ..+ .+....|++.++|.|-.+..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL---ELT---EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC---EEC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 46899999999999999877654321 111 46677899999999986554433
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.51 E-value=9e-07 Score=91.50 Aligned_cols=172 Identities=8% Similarity=0.040 Sum_probs=103.3
Q ss_pred CeeechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhcCcccc---CCC-C-ceEEEEeCCCCCHHHHHHH
Q 038220 167 DIVGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQSSDVK---KHF-D-CCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~-~~~wv~v~~~~~~~~~~~~ 239 (866)
.+.||++++++|...|... .+....+.|+|++|+|||++|+.|++..... ... . ..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888762 3346788999999999999999999852111 111 1 2567777777788899999
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHH--hccCcEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEecchh----
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNF--LQERRFIIVLDDIWEKE---AWDDLKAVFPDAKNGSRIIFTTRFKD---- 310 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~---- 310 (866)
|.+++.+.... .....+.+...+... -.+++++++||+++... .+..+............+|.++...+
T Consensus 101 I~~~L~g~~~~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLC--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCC--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99998664111 111223333333321 13567999999997642 22222221111111222333343221
Q ss_pred -h----hhccCCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 311 -V----AVYADPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 311 -v----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
+ ...+. ...+...+++.++-.+++..++..
T Consensus 179 ~L~~~v~SR~~--~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 179 QINIMPSLKAH--FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHTCHHHHTT--EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcchhhhccCC--ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11221 146899999999999999887643
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=8.1e-09 Score=111.26 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=17.3
Q ss_pred hccccCCCeEEEEcccchh--HHHHHHhhcCCCCCcEEEeeec
Q 038220 679 LDKLLNLRELGLHGDLILH--EEALCKWIYNLKGLQCLKMQSR 719 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~~~~L~~L~l~~~ 719 (866)
+..+++|++|++++|.+.. ...++..+..+++|+.|+|++|
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 3444455555555544321 1223334444444444444443
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=2.9e-08 Score=106.88 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=67.1
Q ss_pred CeeEEEEecCCcccc--CcccccCCCCceEEEeeCCCCcc-----ccccc-cCCCCccEEecCCCcccc-----cccccc
Q 038220 566 KLLQVLDLEGVYMAL--IDSSIGNLIHLRYLDLRKTWLKM-----LPSSM-GNLFNLQSLDLSSTLVDP-----IPLVIW 632 (866)
Q Consensus 566 ~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i-~~l~~L~~L~l~~~~~~~-----lp~~i~ 632 (866)
+.|+.|+|++|.+.. +......+.+|++|+|++|.++. +...+ ....+|++|+|++|.+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555431 11112223455555555555542 11112 123455555555554332 333344
Q ss_pred ccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchh--HHHHHHhhcCCCC
Q 038220 633 KMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILH--EEALCKWIYNLKG 710 (866)
Q Consensus 633 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~~~~ 710 (866)
.+++|++|++++|.....- ...+...+..+++|+.|++++|.+.. ...+...+..+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g--------------------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEG--------------------LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240 (372)
T ss_dssp TCSSCCEEECTTSSCHHHH--------------------HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred cCCCcCEEeCCCCCCCcHH--------------------HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence 4555555555554332100 01233446666778888887776533 2345556666666
Q ss_pred CcEEEeeeccc
Q 038220 711 LQCLKMQSRIT 721 (866)
Q Consensus 711 L~~L~l~~~~~ 721 (866)
|++|+|++|.+
T Consensus 241 L~~L~Ls~N~i 251 (372)
T 3un9_A 241 LELLHLYFNEL 251 (372)
T ss_dssp CCEEECTTSSC
T ss_pred CCEEeccCCCC
Confidence 77777766543
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.41 E-value=1.8e-06 Score=93.46 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=111.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
.+++|++..++.+...+..+.. ...+.|+|+.|+||||+|+.+.+.......+. ...+... .....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCC-CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc----HHHHHHhccCC
Confidence 4699999999999999977542 24678999999999999999987321111110 0000000 00011110000
Q ss_pred cC-----CCCccccCCHHHHHHHHHHH-hccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccC
Q 038220 246 GL-----GKADLDKMHMEDMKEELSNF-LQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYAD 316 (866)
Q Consensus 246 ~~-----~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~ 316 (866)
.. ............+.+.+... ..+++.++|+||++.. ...+.+...+.....+..+|++|.... +.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 00000011122222211110 1246789999999753 456666666655555677777775432 211111
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
.....+++.+++.++..+++...+...+. ..+ .+....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHI---AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 22267899999999999999876533221 111 3567789999999998776554
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=6.3e-07 Score=96.05 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=53.0
Q ss_pred EEecCC-ccccCcccccCCCCceEEEeeC-CCCcccc-ccccCCCCccEEecCCCccccccc-cccccccccEEeccCcc
Q 038220 571 LDLEGV-YMALIDSSIGNLIHLRYLDLRK-TWLKMLP-SSMGNLFNLQSLDLSSTLVDPIPL-VIWKMQQLKHVYFSEFR 646 (866)
Q Consensus 571 L~l~~~-~~~~lp~~i~~l~~L~~L~l~~-~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~ 646 (866)
++++++ .+..+|. +..+.+|++|+|++ |.++.+| ..+++|.+|++|+|++|.+..+|. .|..+++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 355555 5555665 66666666666664 5566555 345566666666666665555543 34556666666666665
Q ss_pred ccccCCCCCCCCCCCceecceee
Q 038220 647 EMVVNPPADASLPNLQTLLGICI 669 (866)
Q Consensus 647 ~~~~~p~~~~~l~~L~~L~~~~~ 669 (866)
.. .+|..+.....|+.|++.++
T Consensus 92 l~-~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LE-SLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSS
T ss_pred cc-eeCHHHcccCCceEEEeeCC
Confidence 54 44433322222555555544
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=2.1e-06 Score=90.74 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=111.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.. ....+. ..+.+..+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~--------- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDL-FGENWRDNFIEMNASDERGID--------- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHH-HTTCHHHHCEEEETTSTTCTT---------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHh-cCCcccCCeEEEeCccccChH---------
Confidence 3569999999999999887754 2348999999999999999998731 011111 12333333211100
Q ss_pred HhcCCCCccccCCHHHHHHHHHHH--h-ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNF--L-QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADP 317 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~--L-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~ 317 (866)
...+........ + .+++.++|+|+++.. ...+.+...+.....+..+|+||.... +......
T Consensus 84 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 84 ------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 001111111100 1 256889999999754 345566666665556778888876543 2111111
Q ss_pred CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 318 GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 318 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
....+++.+++.++..+++...+...+. ..+ .+....+++.++|.+-.+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV---KIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC---CBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2257899999999999999877654321 112 456778889999999755433
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.36 E-value=2.4e-07 Score=89.92 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=39.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-..++||+++++++.+.+.... .+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987743 346789999999999999999873
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1.8e-07 Score=99.75 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCCCceEEEEEeecCCCCCcccc---CCCCCCCeeEEeccccCCCe---EEECCCCCccccEEEeecCCC
Q 038220 732 FPPNLTELSLQFCFLTEDPLKEL---EKLPNLRVLKLKQSSYLGKE---MVSSSGGFSQLQFLKLSNLCY 795 (866)
Q Consensus 732 ~~~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 795 (866)
.+|+|+.|.|.+|.+.+.....+ +.+|+|+.|+|+.|.+.+.. +...+..+++|+.|+|++|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 35788888888877654322222 35778888888777655311 122224577888888887754
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.1e-06 Score=94.31 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=73.2
Q ss_pred ccccccCCCeeEEEEecC-CccccCc-ccccCCCCceEEEeeCCCCccccc-cccCCCCccEEecCCCcccccccccccc
Q 038220 558 VGSILEEYKLLQVLDLEG-VYMALID-SSIGNLIHLRYLDLRKTWLKMLPS-SMGNLFNLQSLDLSSTLVDPIPLVIWKM 634 (866)
Q Consensus 558 ~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~i~~l 634 (866)
+|. +..++.|+.|+|++ |.+..+| ..+++|++|++|+|++|.++.+|+ .+.+|.+|++|+|++|.+..+|..+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 455 77788899999986 8888776 568889999999999999987764 6788999999999999888888776555
Q ss_pred ccccEEeccCcccc
Q 038220 635 QQLKHVYFSEFREM 648 (866)
Q Consensus 635 ~~L~~L~l~~~~~~ 648 (866)
.+|++|++.+|...
T Consensus 103 ~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LSLQELVLSGNPLH 116 (347)
T ss_dssp CCCCEEECCSSCCC
T ss_pred CCceEEEeeCCCcc
Confidence 55999999887643
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.26 E-value=2.3e-05 Score=83.35 Aligned_cols=174 Identities=18% Similarity=0.134 Sum_probs=102.9
Q ss_pred CCCCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 240 (866)
.-.+++|++..++.+..++... ......+.|+|++|+|||++|+.+.+. .... .+.+..+....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 4467999999999998888753 233557899999999999999999873 2222 22333222111
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCC------------------CCc
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAK------------------NGS 300 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~------------------~gs 300 (866)
.......+.. ..+..+|+||+++.. .....+...+.... ++.
T Consensus 94 ----------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 ----------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111111 245678899998754 23333433332111 124
Q ss_pred EEEEEecchhh-hh-ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 301 RIIFTTRFKDV-AV-YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 301 ~iivTtR~~~v-~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
.+|.+|..... .. ........+.+.+++.++...++...+..... ..-.+....|++.+.|.|-.+..
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~------~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK------TCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC------EECHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC------CCCHHHHHHHHHHHCcCHHHHHH
Confidence 56666654321 11 11111257899999999999999877643221 11245677888899999854443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=1.1e-05 Score=88.05 Aligned_cols=284 Identities=10% Similarity=0.055 Sum_probs=147.3
Q ss_pred cCCCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCCccccCc-ccccCCCCceEEEeeCCC---------------
Q 038220 538 SQTRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTW--------------- 600 (866)
Q Consensus 538 ~~~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~--------------- 600 (866)
..+..|.+|+++.+... ...-...|.+|..|+.+++..+ +..++ ..+.++..|+.+.+..+-
T Consensus 65 ~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 34566777777777654 3333456777777888777543 33333 234455555554443211
Q ss_pred ------Cccc-cccccCCCCccEEecCCCcccccc-ccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCC
Q 038220 601 ------LKML-PSSMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICET 672 (866)
Q Consensus 601 ------i~~l-p~~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~ 672 (866)
+..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+-.. .....+.++..|+.+.+.....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~-I~~~~F~~~~~L~~i~~~~~~~- 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKI-IRDYCFAECILLENMEFPNSLY- 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCTTCCBCCCCTTCC-
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceE-eCchhhccccccceeecCCCce-
Confidence 0111 123455666666666544 22232 23455666666666543111 1223345555555554332211
Q ss_pred cchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCcc
Q 038220 673 SCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLK 752 (866)
Q Consensus 673 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~ 752 (866)
.+........+|+.+.+......-. ...+..+..|+.+.+..+.. ......+..+..++.+.+....+. -.
T Consensus 221 -~i~~~~~~~~~l~~i~ip~~~~~i~---~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 221 -YLGDFALSKTGVKNIIIPDSFTELG---KSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp -EECTTTTTTCCCCEEEECTTCCEEC---SSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TT
T ss_pred -EeehhhcccCCCceEEECCCceecc---cccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cc
Confidence 1111122335666666543221000 12344566777777655321 111223344566666665544322 12
Q ss_pred ccCCCCCCCeeEEeccccCCCeE-EECCCCCccccEEEeecCCCCcceE-EccCcccccceeeEeecccCCccC-CCccC
Q 038220 753 ELEKLPNLRVLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSNLCYLERWR-IEEGAMCNLRRLEIIECMRLKIVP-SGLWP 829 (866)
Q Consensus 753 ~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~l~~c~~l~~lp-~~l~~ 829 (866)
.+..+.+|+.+.+..+ +. .+ ...+.++.+|+.+.|.. .+..+. ..+..|.+|+.+.+..+ ++.++ ..+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 4566788888888432 22 22 23466788888888864 244442 23456788888888644 55554 35788
Q ss_pred CCCCCEEEEeCC
Q 038220 830 LTTLSNLKLGYM 841 (866)
Q Consensus 830 l~~L~~L~l~~~ 841 (866)
|++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 899999988754
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=4.4e-07 Score=84.59 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCceEEEEEeecCCCCCccccCCCCCCCeeEEeccc-cCCCeEEECCCC----CccccEEEeecCCCCcce-EEccCccc
Q 038220 734 PNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSS-YLGKEMVSSSGG----FSQLQFLKLSNLCYLERW-RIEEGAMC 807 (866)
Q Consensus 734 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~-~~~~~~~p 807 (866)
.+|+.|+|++|.++...+..+..+++|+.|+|++|. +++ .-...+.. +++|++|+|++|+.+++- ......+|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 478888888888877777778888888888888775 332 11111222 346777777777655431 22234567
Q ss_pred ccceeeEeecccCCc
Q 038220 808 NLRRLEIIECMRLKI 822 (866)
Q Consensus 808 ~L~~L~l~~c~~l~~ 822 (866)
+|++|+|++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777776653
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=9.1e-06 Score=87.17 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=110.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|+++.++.+..++..+.. ..+.|+|++|+||||+|+.+.+.......+. ....+..+..... ..+.+.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHHH
Confidence 45799999999999999887642 2388999999999999999987411111111 1233333332222 222222222
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCCCC
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPGSP 320 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~ 320 (866)
........... . .....-.++.-+|++|+++.. ...+.+...+.......++|++|.... +.........
T Consensus 113 ~~~~~~~~~~~-~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 113 FARLTVSKPSK-H------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHSCCCCCCT-T------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred Hhhhcccccch-h------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 22110000000 0 000111235569999998654 334555555444444567777775432 1111111114
Q ss_pred CeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 321 PYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 321 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
.+.+.+++.++....+...+...+. ..+ .+....|++.++|.|-.+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~---~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENV---KCD---DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC---CCC---HHHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCC---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 6889999999999999887643221 122 46778899999999976443
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.15 E-value=8e-06 Score=89.00 Aligned_cols=291 Identities=15% Similarity=0.088 Sum_probs=174.4
Q ss_pred CceEEEEecCC----CcCCCCCCCceEEEecCC-CCCccccccCCCeeEEEEecCC------------c---------cc
Q 038220 526 KARRLAIHFGI----PSQTRKSSRVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGV------------Y---------MA 579 (866)
Q Consensus 526 ~~r~l~i~~~~----~~~~~~~~~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~------------~---------~~ 579 (866)
++..+.+.... ...+..|++|+++.+.+. ...-...|..+..|+.+.+..+ . ..
T Consensus 72 ~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~ 151 (394)
T 4fs7_A 72 KVTEIKIPSTVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVT 151 (394)
T ss_dssp TEEEEECCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCC
T ss_pred CceEEEeCCCccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccCcccc
Confidence 45555554332 234667888888888654 2222345555555555444321 1 01
Q ss_pred cC-cccccCCCCceEEEeeCCCCcccc-ccccCCCCccEEecCCCcccccc-ccccccccccEEeccCccccccCCCCCC
Q 038220 580 LI-DSSIGNLIHLRYLDLRKTWLKMLP-SSMGNLFNLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFREMVVNPPADA 656 (866)
Q Consensus 580 ~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~ 656 (866)
.+ ...+.++.+|+.+.+.++ +..++ ..+..+.+|+.+++..+ +..++ ..+..+..|+.+.+..+.. .+.....
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~ 227 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFAL 227 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTT
T ss_pred ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Eeehhhc
Confidence 11 234677889999999765 34454 45778899999999766 44443 3466788888887765432 2233334
Q ss_pred CCCCCceecceeecCCcchhHhhccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCc
Q 038220 657 SLPNLQTLLGICICETSCVEQGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNL 736 (866)
Q Consensus 657 ~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 736 (866)
...+|+.+.+... ........+..+.+|+.+.+..+..... ...+..+..++.+......+ ....+..+.+|
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~---~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L 299 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIG---GSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSL 299 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEEC---SCTTTTCTTCCEEEECSSEE----CTTTTTTCTTC
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCCcceee---ccccccccccceeccCceee----ccccccccccc
Confidence 4566776654332 1111112255677888888765432100 12355677787776654321 11234457889
Q ss_pred eEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeE-EECCCCCccccEEEeecCCCCcceE-EccCcccccceeeE
Q 038220 737 TELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSNLCYLERWR-IEEGAMCNLRRLEI 814 (866)
Q Consensus 737 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~l 814 (866)
+.+.+..+ +..-....+..+.+|+.++|.. .+. .+ ...+.+|.+|+.+.|..+ +..+. ..+..|++|+.+++
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~--~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVE--EIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCC--EECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCC-ccc--EEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 99888654 3323334577889999999943 332 23 235678999999999753 44443 24567899999999
Q ss_pred eecccCCccCCCccCCCCCCEE
Q 038220 815 IECMRLKIVPSGLWPLTTLSNL 836 (866)
Q Consensus 815 ~~c~~l~~lp~~l~~l~~L~~L 836 (866)
..+ ++.+...+.+|++|+.+
T Consensus 374 p~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EGG--GGGGGGGBCTTCEEEEE
T ss_pred CCC--CEEhhheecCCCCCcEE
Confidence 754 45555678889988875
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.14 E-value=2.8e-05 Score=83.84 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=106.1
Q ss_pred CCCeeechhhHHH---HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe----CCCCCHHHHH
Q 038220 165 EEDIVGLGEDMMI---LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV----SQEYRKWEIL 237 (866)
Q Consensus 165 ~~~~vGr~~~~~~---l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v----~~~~~~~~~~ 237 (866)
-.+++|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+.+. ...... .+.+.. +......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhHHH
Confidence 4579999988766 45555555433468899999999999999999984 222111 122221 2223344444
Q ss_pred HHHHHHHhcCC--------------------CC-------ccccCCHHHHHHHHHHHh-----ccC----cEEEEEecCC
Q 038220 238 QDLCKKVLGLG--------------------KA-------DLDKMHMEDMKEELSNFL-----QER----RFIIVLDDIW 281 (866)
Q Consensus 238 ~~i~~~~~~~~--------------------~~-------~~~~~~~~~~~~~l~~~L-----~~k----~~LlVlDdv~ 281 (866)
.+......... .. .........+...+.... .++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 44443321100 00 000000122222222221 133 3599999997
Q ss_pred Ch--hhHHHHHhhCCCCCCCcEEEEEecc-----------------hhhhhccCCCCCCeeccCCChHHHHHHHHHHHhC
Q 038220 282 EK--EAWDDLKAVFPDAKNGSRIIFTTRF-----------------KDVAVYADPGSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 282 ~~--~~~~~l~~~l~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
.. +..+.+...+...... .++++|.. +.+... ...+.+.+++.++..+++...+..
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR----~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR----LLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT----EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh----ccEEEecCCCHHHHHHHHHHHHHH
Confidence 64 4556666666544433 34444431 111111 144799999999999999877654
Q ss_pred CCCCCCCCChhHHHHHHHHHHHcC-CchhHHH
Q 038220 343 GGNAMSSLPPWSRELGKQIVKKCG-GLPLAIV 373 (866)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~i~~~~~-g~Plai~ 373 (866)
... ..+ .+....|++.+. |.|-.+.
T Consensus 275 ~~~---~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 275 EDV---EMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp TTC---CBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred cCC---CCC---HHHHHHHHHHhcCCCHHHHH
Confidence 321 122 456677888887 7775443
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7.2e-06 Score=87.99 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=103.2
Q ss_pred CCCeeechhhHHHHHHHH-hcCCCceEEEEEEccCCChHHHHHHHHhcC---ccc-cCCCCc------------------
Q 038220 165 EEDIVGLGEDMMILGNRV-IHGGLRRSVISIIGMAGLGKTTLAKKMYQS---SDV-KKHFDC------------------ 221 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~-~~~f~~------------------ 221 (866)
-.+++|.+...+.+..++ ..+.. .. +.|+|+.|+||||+|+.+.+. +.. .-.++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 356899999999999888 54432 23 899999999999999988762 000 000010
Q ss_pred --eEEEEeCCC-CCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCC
Q 038220 222 --CAWAYVSQE-YRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDA 296 (866)
Q Consensus 222 --~~wv~v~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~ 296 (866)
.+.+..+.. .......++++..+..... .. ... .+.. +.+++-++|+|++... ...+.+...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-----~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQ--VD-----FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC---------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhcc--cc-----ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 011111100 0000012222222221100 00 000 0000 2346779999999764 2344455444433
Q ss_pred CCCcEEEEEecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 297 KNGSRIIFTTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 297 ~~gs~iivTtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
..+..+|++|.... +..........+++.+++.++..+.+...+...+- ..+. .+....|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~--~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLET--KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECC--SHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCc--HHHHHHHHHHcCCCHHHHHHH
Confidence 44677877776432 22112122267899999999999999876643221 1110 245677889999988655443
No 177
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=2e-05 Score=81.52 Aligned_cols=181 Identities=21% Similarity=0.090 Sum_probs=98.8
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY 231 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 231 (866)
..-.+++|.++.++++.+.+... -...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH
Confidence 34567999999999998887431 122456899999999999999999983 2221 2223222111
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------h---hHHHHHhhCC-
Q 038220 232 RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------E---AWDDLKAVFP- 294 (866)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~- 294 (866)
. . ........+...+......++.+|+|||++.. . .+..+...+.
T Consensus 89 ~--------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 K--------------K----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp C--------------C----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred H--------------h----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 0 0 00001111222222233356789999999542 1 1222222221
Q ss_pred -CCCCCcEEEEEecchhhhh--ccC--CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-c
Q 038220 295 -DAKNGSRIIFTTRFKDVAV--YAD--PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG-L 368 (866)
Q Consensus 295 -~~~~gs~iivTtR~~~v~~--~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~ 368 (866)
....+..||.||....... ... .....+.+...+.++..+++......... .... ....++..+.| .
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~----~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL---AEDV----NLEEIAKMTEGCV 223 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB---CTTC----CHHHHHHHCTTCC
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC---CCcC----CHHHHHHHcCCCC
Confidence 2233566777776443211 011 11146889999999999999887654321 1111 13556677766 3
Q ss_pred hhHHH
Q 038220 369 PLAIV 373 (866)
Q Consensus 369 Plai~ 373 (866)
|-.+.
T Consensus 224 ~~~i~ 228 (285)
T 3h4m_A 224 GAELK 228 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.09 E-value=4.3e-06 Score=84.22 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=96.9
Q ss_pred CCeeech---hhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 166 EDIVGLG---EDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 166 ~~~vGr~---~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
.+++|.+ ..++.+..+...+ ..+.+.|+|++|+||||||+.+++. .......+.|+.++.-...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---------
Confidence 4577633 4455555555543 2467889999999999999999873 3222234566665432110
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--h--HHHHHhhCCC-CCCC-cEEEEEecchhh-----
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--A--WDDLKAVFPD-AKNG-SRIIFTTRFKDV----- 311 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~--~~~l~~~l~~-~~~g-s~iivTtR~~~v----- 311 (866)
.. . .+ +.+ .++.+||+||++... . .+.+...+.. ...+ .++|+||+...-
T Consensus 95 ---------~~-----~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ---------ST-----A---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ---------CG-----G---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ---------HH-----H---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00 0 00 011 356789999987542 1 2333332211 0112 247777763321
Q ss_pred ----hhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 038220 312 ----AVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVL 375 (866)
Q Consensus 312 ----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i 375 (866)
...+.. ...+.+.+++.++..+++...+...+. ..+ .+....+++.++|.+-.+..+
T Consensus 156 ~~~l~~r~~~-~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 156 LPDLVSRMHW-GLTYQLQPMMDDEKLAALQRRAAMRGL---QLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CHHHHHHHHH-SEEEECCCCCGGGHHHHHHHHHHHTTC---CCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhhHhhc-CceEEeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHccCCHHHHHHH
Confidence 111100 156899999999999999887653221 122 456778888999988665543
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.1e-05 Score=90.84 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=107.2
Q ss_pred CCCCeeechhhHHHHHHHHhcCC---------------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeC
Q 038220 164 SEEDIVGLGEDMMILGNRVIHGG---------------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVS 228 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~ 228 (866)
.-.+++|++..++++.+++.... +..+.+.|+|++|+||||+|+.+++. . .+ .++.+..+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~-~~i~in~s 111 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GY-DILEQNAS 111 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TC-EEEEECTT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CC-CEEEEeCC
Confidence 34679999999999999987510 12468999999999999999999984 2 12 13444444
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH--hccCcEEEEEecCCCh-----hhHHHHHhhCCCCCCCcE
Q 038220 229 QEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF--LQERRFIIVLDDIWEK-----EAWDDLKAVFPDAKNGSR 301 (866)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~ 301 (866)
..... ..+...+....... ... .......+. ..+++.+|++|+++.. ..+..+...+... +..
T Consensus 112 ~~~~~-~~~~~~i~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 112 DVRSK-TLLNAGVKNALDNM--SVV-----GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STP 181 (516)
T ss_dssp SCCCH-HHHHHTGGGGTTBC--CST-----TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSC
T ss_pred CcchH-HHHHHHHHHHhccc--cHH-----HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCC
Confidence 43332 22222222211110 000 000000000 1357889999999643 1234444433322 233
Q ss_pred EEEEecchh---hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc-hhHHHHHh
Q 038220 302 IIFTTRFKD---VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL-PLAIVVLG 376 (866)
Q Consensus 302 iivTtR~~~---v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~i~ 376 (866)
||+++.... +.. .......+.+.+++.++..+++...+..... ..+ .+....|++.++|. +-++..+.
T Consensus 182 iIli~~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~---~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKF---KLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 555554322 222 2222256899999999999988776654221 112 23567788999994 45555554
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.06 E-value=9.2e-05 Score=75.41 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=94.9
Q ss_pred CCCeeechhhHHHHHHHHh---cCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMMILGNRVI---HGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
-.+++|.++.++.+.+++. ... ...+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh-
Confidence 3568999888877766543 211 23456889999999999999999983 2222 334444332110
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-----------------hhHHHHHhhCCC--
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-----------------EAWDDLKAVFPD-- 295 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~l~~-- 295 (866)
........+...+.......+.+|++|+++.. .....+...+..
T Consensus 79 -----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 79 -----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp -----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred -----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00001122222233333346789999999753 112223222221
Q ss_pred CCCCcEEEEEecchhh-hh-ccC--CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh
Q 038220 296 AKNGSRIIFTTRFKDV-AV-YAD--PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL 370 (866)
Q Consensus 296 ~~~gs~iivTtR~~~v-~~-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 370 (866)
...+..+|.||..... .. ... .-...+.+...+.++-.+++...+..... ..........+++.+.|.+-
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-----~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-----TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-----CBTHHHHHHHHHHTCTTCCH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-----CcchhhHHHHHHHHCCCCCH
Confidence 2234556666654331 11 111 11246778889999999998877644321 11112234678888877653
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=4.6e-05 Score=78.12 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=90.6
Q ss_pred CCeeechhhHHHHHH-------HHhcC-CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHH
Q 038220 166 EDIVGLGEDMMILGN-------RVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEIL 237 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~-------~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 237 (866)
..++|.....+++.. .+... ......+.|+|++|+|||++|+.+++. .. +. .+.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~~------ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDKM------ 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGGC------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHHh------
Confidence 457888777666665 33221 334678999999999999999999983 21 11 1222222210
Q ss_pred HHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh------------hhHHHHHhhCCC---CCCCcEE
Q 038220 238 QDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK------------EAWDDLKAVFPD---AKNGSRI 302 (866)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~gs~i 302 (866)
.+. . .......+...+......+..+|+|||++.. ...+.+...+.. ......|
T Consensus 102 -------~g~--~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGF--S--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTC--C--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCC--c--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 0 0000112222333333467889999998532 122334444332 2223446
Q ss_pred EEEecchhhhhc---cCCCCCCeeccCCCh-HHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC
Q 038220 303 IFTTRFKDVAVY---ADPGSPPYELCLLNE-EDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG 367 (866)
Q Consensus 303 ivTtR~~~v~~~---~~~~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 367 (866)
|.||........ ...-...+.+.+++. ++...++.... ..+ .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~--------~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG--------NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--------CSC---HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--------CCC---HHHHHHHHHHhcC
Confidence 667765533221 111125578888887 66666665431 111 3556778888877
No 182
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.02 E-value=2.8e-05 Score=85.19 Aligned_cols=179 Identities=17% Similarity=0.115 Sum_probs=100.0
Q ss_pred CCCeeechhhH---HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 165 EEDIVGLGEDM---MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 165 ~~~~vGr~~~~---~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
-.+++|.+..+ ..+...+..+. ...+.|+|++|+||||+|+.+.+. .... ++.++.......-+++++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHH
Confidence 35789988887 67777777665 467899999999999999999983 2222 233322211111122221
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh--hHHHHHhhCCCCCCCcEEEE-Eecchh--hhhccC
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE--AWDDLKAVFPDAKNGSRIIF-TTRFKD--VAVYAD 316 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~--v~~~~~ 316 (866)
.... .....+++.+|++|+++... ..+.+...+.. + ...+|. ||.+.. +.....
T Consensus 96 ~~a~-------------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 96 ERAR-------------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp HHHH-------------------HHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHH
T ss_pred HHHH-------------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHh
Confidence 1110 11114678899999997642 23333333332 1 233443 444432 111111
Q ss_pred CCCCCeeccCCChHHHHHHHHHHHhCCCCCCC-CCChhHHHHHHHHHHHcCCchhHHH
Q 038220 317 PGSPPYELCLLNEEDSCELLFKKAFAGGNAMS-SLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 317 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
....++.+.+++.++...++.+.......... .....-.+....|++.++|.+-.+.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 12257889999999999999887654211100 0011224566778888888886544
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.02 E-value=2.3e-05 Score=86.03 Aligned_cols=203 Identities=19% Similarity=0.168 Sum_probs=111.2
Q ss_pred CCee-echhh--HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCC--ceEEEEeCCCCCHHHHHHHH
Q 038220 166 EDIV-GLGED--MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFD--CCAWAYVSQEYRKWEILQDL 240 (866)
Q Consensus 166 ~~~v-Gr~~~--~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i 240 (866)
.+|+ |.... ...+......... ...+.|+|++|+||||||+.+++. ....+. .+++++.. ....++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHH
Confidence 3455 64433 3334443333332 567999999999999999999983 333332 24455432 334444
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh----hHHHHHhhCCC-CCCCcEEEEEecchh-----
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE----AWDDLKAVFPD-AKNGSRIIFTTRFKD----- 310 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~iivTtR~~~----- 310 (866)
...+... .. ..+...+..+.-+|++||++... .-+.+...+.. ...|..||+||.+..
T Consensus 176 ~~~~~~~--------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 176 VDSMKEG--------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHTT--------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHcc--------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 4444331 11 12233333367799999996432 22333333221 234677888887532
Q ss_pred ----hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhh------cc
Q 038220 311 ----VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGL------LS 380 (866)
Q Consensus 311 ----v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~------l~ 380 (866)
+...+..+ ..+.+.+++.++..+++.+.+...+- ..+ .+....|++.+.|.+-.+.-+... ..
T Consensus 244 l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL~~~~~~~~~---~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 244 FQDRLVSRFQMG-LVAKLEPPDEETRKSIARKMLEIEHG---ELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp CCHHHHHHHHSS-BCCBCCCCCHHHHHHHHHHHHHHHTC---CCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhccCC-eEEEeCCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 11222211 46889999999999999887643221 122 244667888889888644322211 12
Q ss_pred CCCCCHHHHHHHHHhh
Q 038220 381 SKEATYSEWLKVLQSV 396 (866)
Q Consensus 381 ~~~~~~~~w~~~l~~~ 396 (866)
...-+.+.+..++...
T Consensus 317 ~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 317 GKEVDLKEAILLLKDF 332 (440)
T ss_dssp SSCCCHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHH
Confidence 2223456666655543
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=1e-05 Score=84.91 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=88.4
Q ss_pred CeeechhhHHHHHHHHhcC-------------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 167 DIVGLGEDMMILGNRVIHG-------------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
+++|.+..++.+.+.+... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 5889988888887665421 223457899999999999999988763111111111123333311
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCC-----------ChhhHHHHHhhCCCCCCCcEE
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIW-----------EKEAWDDLKAVFPDAKNGSRI 302 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~gs~i 302 (866)
.+.. .........+...+.. .+.-+|++|+++ .......+...+.....+..+
T Consensus 109 ---------~l~~----~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ---------DLVG----QYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ---------GTCC----SSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ---------Hhhh----hcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 0000 0000111222222222 245699999997 333445566555555556778
Q ss_pred EEEecchhhhhcc--CC-----CCCCeeccCCChHHHHHHHHHHHhC
Q 038220 303 IFTTRFKDVAVYA--DP-----GSPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 303 ivTtR~~~v~~~~--~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
|.||......... .+ ....+.+.+++.++..+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8887543221110 00 1157899999999999999877644
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.96 E-value=3.5e-05 Score=81.35 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
-.+++|.++.++.+.+++..+. ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. . ...+++.+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHHHHH
Confidence 4679999999999999998654 2357788899999999999999873 21 12344443332 2 22222222221
Q ss_pred hcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEecchh-hhhccCCCCC
Q 038220 245 LGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE---AWDDLKAVFPDAKNGSRIIFTTRFKD-VAVYADPGSP 320 (866)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~ 320 (866)
..... ..+++-++++||++... ..+.+...+.....+..+|+||.... +.........
T Consensus 97 ~~~~~------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 97 ASAAS------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHBCC------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred Hhhcc------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 11100 01367899999998654 44555554443334567888876543 1111101114
Q ss_pred CeeccCCChHHHHHH-------HHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 038220 321 PYELCLLNEEDSCEL-------LFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAI 372 (866)
Q Consensus 321 ~~~l~~L~~~~~~~L-------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 372 (866)
.+++.+++.++-.++ +...+...+- ..++ .+....|++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~---~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGI---AIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC---CBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC---CCCc--HHHHHHHHHhCCCCHHHH
Confidence 688999998774332 2222221110 1111 256677888888877543
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=0.00021 Score=76.32 Aligned_cols=184 Identities=15% Similarity=0.054 Sum_probs=101.2
Q ss_pred CCCCCeeechhhHHHHHHHHhc----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIH----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..-.+++|.+..++.+.+.+.. .....+.+.|+|++|+|||+||+.+++. ... ..+.+.++.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~---~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGA---TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTC---EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCC---eEEEEehHHhhc
Confidence 3345799999999998887752 1123467899999999999999999873 221 133444432111
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHhccCcEEEEEecCCCh-------------hhHHHHHhhCCC---
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEEL-SNFLQERRFIIVLDDIWEK-------------EAWDDLKAVFPD--- 295 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~--- 295 (866)
. ... ........+ ...-..++.+|+||+++.. .....+...+..
T Consensus 156 ~------------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 156 K------------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp S------------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred c------------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 0 000 011112222 2222356789999998432 112233332221
Q ss_pred -CCCCcEEEEEecchh-hhhc-cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-chhH
Q 038220 296 -AKNGSRIIFTTRFKD-VAVY-ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG-LPLA 371 (866)
Q Consensus 296 -~~~gs~iivTtR~~~-v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pla 371 (866)
...+..||.||.... +... .......+.+...+.++..+++...+..... ... .+....|++.+.| .+-.
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~---~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLS---EEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCC---HHHHHHHHHHTTTCCHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---Ccc---HHHHHHHHHHcCCCCHHH
Confidence 123445555664332 2111 1111135778888888888888776643221 111 3566778888888 4555
Q ss_pred HHHHh
Q 038220 372 IVVLG 376 (866)
Q Consensus 372 i~~i~ 376 (866)
+..+.
T Consensus 291 l~~l~ 295 (357)
T 3d8b_A 291 MTQLC 295 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.86 E-value=0.00021 Score=75.52 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccC--------------------CCCceEEEEeCCCC
Q 038220 172 GEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKK--------------------HFDCCAWAYVSQEY 231 (866)
Q Consensus 172 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~v~~~~ 231 (866)
++..+.+...+..+. -...+.++|+.|+||||+|+.+.+...-.. |++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 445566666666543 234688999999999999999876311000 111 11221110
Q ss_pred CHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE
Q 038220 232 RKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL-----QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIF 304 (866)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 304 (866)
.......+++.+ +.+.+ .+++-++|+|+++.. ...+.+...+.....++.+|+
T Consensus 84 -------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 84 -------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp -------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred -------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 001122333332 22222 246789999999764 455667777766556677777
Q ss_pred Eecchh-hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHh
Q 038220 305 TTRFKD-VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLG 376 (866)
Q Consensus 305 TtR~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~ 376 (866)
+|.+.. +...+......+++.+++.++..+.+.+.. . .+ .+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~-----~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T-----MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C-----CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 776543 222222223678999999999999887764 1 11 3556789999999997665544
No 188
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=7.2e-05 Score=81.40 Aligned_cols=289 Identities=10% Similarity=0.044 Sum_probs=136.0
Q ss_pred CCCCC-CceEEEecCC-CCCccccccCCCeeEEEEecCCc---cccCcc-cccCCCCceEEEeeCCCCcccc-ccccCCC
Q 038220 540 TRKSS-RVRSLLFFDI-SEPVGSILEEYKLLQVLDLEGVY---MALIDS-SIGNLIHLRYLDLRKTWLKMLP-SSMGNLF 612 (866)
Q Consensus 540 ~~~~~-~lr~L~~~~~-~~~~~~~~~~~~~Lr~L~l~~~~---~~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~ 612 (866)
+..+. .|+++.+... ...-...|.+|..|+.+.+..+. +..+.. .+..+..|+.+.+..+ ++.++ ..+..+.
T Consensus 59 F~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred ccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 44453 4777777654 33334567788888888876542 444432 3556667776666543 44444 3456677
Q ss_pred CccEEecCCCcccccc-ccccccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchhHhhccccCCCeEEEE
Q 038220 613 NLQSLDLSSTLVDPIP-LVIWKMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVEQGLDKLLNLRELGLH 691 (866)
Q Consensus 613 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~ 691 (866)
+|+.+.+..+ +..++ ..+..+.+|+.+.+..+-. .+........+|+.+.+... ........+..+.++......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~--~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT--AIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccce-eeeecccceecccccccccccceee--EeccccccccceeEEEECCc-ccccccchhhhccccceeccc
Confidence 7777777544 22332 2355666777776654311 22222212234554443222 111111113344444444333
Q ss_pred cccchhHHHHH-----------HhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCCCC
Q 038220 692 GDLILHEEALC-----------KWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLPNL 760 (866)
Q Consensus 692 ~~~~~~~~~l~-----------~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 760 (866)
.......+... ........+..+.+... ....-...+..+.+|+.+.+..+.. ......+..+++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L 290 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPAL 290 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTC
T ss_pred ccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccccEEecccccc-eecCccccccccc
Confidence 21100000000 00000111122211110 0000112234456666666643321 1122345567777
Q ss_pred CeeEEeccccCCCeE-EECCCCCccccEEEeecCCCCcceE-EccCcccccceeeEeecccCCccC-CCccCCCCCCEEE
Q 038220 761 RVLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSNLCYLERWR-IEEGAMCNLRRLEIIECMRLKIVP-SGLWPLTTLSNLK 837 (866)
Q Consensus 761 ~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~ 837 (866)
+.+.+. +.+. .+ ...+.+|.+|+.+.|..+ +..+. ..+..|.+|+.+.|-.+ ++.++ ..+.+|++|+.++
T Consensus 291 ~~i~l~-~~i~--~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 291 QDIEFS-SRIT--ELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CEEECC-TTCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEE
T ss_pred ccccCC-Cccc--ccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEE
Confidence 777773 2222 12 124566777777777542 33332 23445677777777532 44443 3467777777777
Q ss_pred EeCCCH
Q 038220 838 LGYMPF 843 (866)
Q Consensus 838 l~~~~~ 843 (866)
+.++..
T Consensus 364 ~~~~~~ 369 (394)
T 4gt6_A 364 YSGSRS 369 (394)
T ss_dssp ESSCHH
T ss_pred ECCcee
Confidence 777653
No 189
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=7.2e-06 Score=78.60 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=45.1
Q ss_pred cccCCCeeEEEEecCC-ccc-----cCcccccCCCCceEEEeeCCCCc-----cccccccCCCCccEEecCCCcccc---
Q 038220 561 ILEEYKLLQVLDLEGV-YMA-----LIDSSIGNLIHLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLVDP--- 626 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~--- 626 (866)
.+...+.|+.|+|++| .+. .+...+...++|++|+|++|.|. .+...+....+|++|+|++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4455666667777666 543 23344555566666666666654 234444455566666666664443
Q ss_pred --ccccccccccccEEec
Q 038220 627 --IPLVIWKMQQLKHVYF 642 (866)
Q Consensus 627 --lp~~i~~l~~L~~L~l 642 (866)
+...+...++|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 3334444555555555
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.84 E-value=0.00016 Score=76.17 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccC
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKM 255 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 255 (866)
..+..++..+......+.|+|++|+||||||+.+++. ....-..+++++. .....++...+...
T Consensus 24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~-------- 87 (324)
T 1l8q_A 24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG-------- 87 (324)
T ss_dssp HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC--------
Confidence 3444444443323567899999999999999999983 2111112455543 23333333333221
Q ss_pred CHHHHHHHHHHHhccCcEEEEEecCCChh---h-HHHHHhhCCC-CCCCcEEEEEecchhh---------hhccCCCCCC
Q 038220 256 HMEDMKEELSNFLQERRFIIVLDDIWEKE---A-WDDLKAVFPD-AKNGSRIIFTTRFKDV---------AVYADPGSPP 321 (866)
Q Consensus 256 ~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~ 321 (866)
..... ...+ .+.-+|++||++... . .+.+...+.. ...+..+|+||..... ...+.. ..+
T Consensus 88 ~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~-~~~ 161 (324)
T 1l8q_A 88 TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEG-GIL 161 (324)
T ss_dssp CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHT-SEE
T ss_pred cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccC-ceE
Confidence 11111 2222 246799999996542 1 2233333221 1235578888754321 111111 145
Q ss_pred eeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhH
Q 038220 322 YELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLA 371 (866)
Q Consensus 322 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 371 (866)
+++.+ +.++..+++...+...+. ..+ .+....|++.+ |.+-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~---~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNL---ELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTC---CCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHhC-CCHHH
Confidence 88999 999999999887754321 222 45567788888 76643
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.83 E-value=1.8e-05 Score=72.36 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=65.9
Q ss_pred CeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 167 DIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+.+++... +.... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc-------------
Confidence 578999999999888764222223578999999999999999998421 11122 23 555543221
Q ss_pred CCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecc
Q 038220 247 LGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
.... ..+.. .+.-.|++|+++.. +....+...+.......++|.||..
T Consensus 66 --------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0001 11111 23457899999754 3344555555444445678877764
No 192
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.0012 Score=69.10 Aligned_cols=185 Identities=17% Similarity=0.090 Sum_probs=99.5
Q ss_pred CCCCeeechhhHHHHHHHHhc---------C-CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 164 SEEDIVGLGEDMMILGNRVIH---------G-GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
.-.+++|.++.++.|.+.+.- + ....+-+.|+|++|+|||+||+.+++... .. ..+.+..+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh-
Confidence 345789999888888776631 1 12246789999999999999999998310 11 122333332110
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---------hh----HHHHHhhCC---CCC
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---------EA----WDDLKAVFP---DAK 297 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---------~~----~~~l~~~l~---~~~ 297 (866)
. ........+.......-..++.+|+||+++.. .. ...+...+. ...
T Consensus 85 -------------~----~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 85 -------------K----WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp -------------S----SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred -------------h----hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 0 00111122222222222357889999999743 11 122222221 123
Q ss_pred CCcEEEEEecchh-hhhc-cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc-hhHHHH
Q 038220 298 NGSRIIFTTRFKD-VAVY-ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL-PLAIVV 374 (866)
Q Consensus 298 ~gs~iivTtR~~~-v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~ 374 (866)
.+..||.||.... +... .......+.+...+.++-.+++......... ... ......|++.+.|. +-.+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~---~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLT---EADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCC---HHHHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 3445555564332 1110 0111145778888888888888776643221 111 34567788888886 444554
Q ss_pred Hh
Q 038220 375 LG 376 (866)
Q Consensus 375 i~ 376 (866)
+.
T Consensus 222 l~ 223 (322)
T 1xwi_A 222 IV 223 (322)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.83 E-value=0.00031 Score=73.79 Aligned_cols=184 Identities=18% Similarity=0.112 Sum_probs=101.1
Q ss_pred CCCCCeeechhhHHHHHHHHh----------cCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVI----------HGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..-.+++|.++.++.|.+.+. ......+-+.|+|++|+|||+||+.+++. .... .+.+..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH----
Confidence 334679999999999888772 11222467899999999999999999983 2222 2223221
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHhccCcEEEEEecCCChh-------------hHHHHHhhCC---C
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEEL-SNFLQERRFIIVLDDIWEKE-------------AWDDLKAVFP---D 295 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~ 295 (866)
++ .....+ ........+ ...-..++.+|+||+++... ....+...+. .
T Consensus 86 --~l----~~~~~g---------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 86 --DL----VSKWMG---------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp --HH----HTTTGG---------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred --HH----hhcccc---------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 11 111000 112222222 22223567899999997431 1233333222 2
Q ss_pred CCCCcEEEEEecchhhhh-c-cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc-hhHH
Q 038220 296 AKNGSRIIFTTRFKDVAV-Y-ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL-PLAI 372 (866)
Q Consensus 296 ~~~gs~iivTtR~~~v~~-~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai 372 (866)
...+..||.||....... . ...-...+.+...+.++-.+++...+..... ..+ ......|++.+.|. +-.|
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~---~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLT---KEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCC---HHHHHHHHHTTTTCCHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCC---HHHHHHHHHHcCCCCHHHH
Confidence 334555665665432211 0 0011145778888999999999887654321 111 34566788888773 4444
Q ss_pred HHHh
Q 038220 373 VVLG 376 (866)
Q Consensus 373 ~~i~ 376 (866)
..+.
T Consensus 225 ~~l~ 228 (322)
T 3eie_A 225 AVVV 228 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.81 E-value=0.00041 Score=75.03 Aligned_cols=184 Identities=17% Similarity=0.094 Sum_probs=97.6
Q ss_pred CCCCCeeechhhHHHHHHHHhcC----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..-.+++|.+..++.+.+++... ....+-+.|+|++|+|||+||+.+++. ... ..+.+.++.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc
Confidence 34467999999999998887321 112357899999999999999999873 211 123333322111
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------hhHHHHHhhC---C-C
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------EAWDDLKAVF---P-D 295 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~l---~-~ 295 (866)
. ..+ .....+...+...-..++.+|+||+++.. .....+...+ . .
T Consensus 187 ~----------~~g--------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 187 K----------YVG--------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred c----------ccc--------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 0 000 01111222222222345689999999643 0111222221 1 1
Q ss_pred CCCCcEEEEEecchh-hhhc-cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchh-HH
Q 038220 296 AKNGSRIIFTTRFKD-VAVY-ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPL-AI 372 (866)
Q Consensus 296 ~~~gs~iivTtR~~~-v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai 372 (866)
......||.||.... +... .......+.+...+.++..+++...+..... ... .+....|++.+.|..- ++
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~---~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLT---QKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSC---HHHHHHHHHHTTTCCHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHcCCCCHHHH
Confidence 123344555564322 2111 1111135788888999999998877644221 111 3466778888887543 44
Q ss_pred HHH
Q 038220 373 VVL 375 (866)
Q Consensus 373 ~~i 375 (866)
..+
T Consensus 323 ~~L 325 (389)
T 3vfd_A 323 TAL 325 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=0.00017 Score=76.60 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=102.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCCCHHHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
-.+++|.+..++.+...+..+. .+.+.++|+.|+||||+|+.+++... ...+.. +.-+..+...
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~------------ 88 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDR------------ 88 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCC------------
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccc------------
Confidence 3568899888888888887764 23388999999999999999987310 111111 1222222111
Q ss_pred HhcCCCCccccCCHHHHHHHHHHHh------ccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh-hhhc
Q 038220 244 VLGLGKADLDKMHMEDMKEELSNFL------QERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD-VAVY 314 (866)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~ 314 (866)
..+.+.+.+.... .+.+-++|+|+++.. ...+.+...+........+|++|.... +...
T Consensus 89 ------------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 89 ------------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp ------------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred ------------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 1222222222222 134678999998643 344555544443344566777765432 1111
Q ss_pred cCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 315 ADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 315 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
.......+.+.+++.++..+.+...+....- ..+ .+..+.|++.++|.+--+.
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~---~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL---KLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC---CBC---HHHHHHHHHHHTTCHHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHcCCCHHHHH
Confidence 1112246789999999988888776532211 112 3567788899999887443
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.74 E-value=2.9e-05 Score=74.37 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=39.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-..++||+.+++.+.+.+.... .+.+.|+|++|+||||+|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999987743 346789999999999999999873
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.73 E-value=0.00097 Score=69.17 Aligned_cols=179 Identities=16% Similarity=0.095 Sum_probs=96.7
Q ss_pred CCCCeeechhhHHHHHHHHhcC----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 164 SEEDIVGLGEDMMILGNRVIHG----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
.-.+++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++. .... .+.+..+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh-
Confidence 3457999999999988877431 112457899999999999999999983 2211 23333332110
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHhccCcEEEEEecCCCh-------------hhHHHHH---hhCCCC
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEE-LSNFLQERRFIIVLDDIWEK-------------EAWDDLK---AVFPDA 296 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~---~~l~~~ 296 (866)
. .. ......... +......++.+|++|+++.. .....+. ..++..
T Consensus 93 -------------~----~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 93 -------------K----YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp -------------S----SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred -------------c----cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 0 00 011222222 22222356789999998542 0111122 122221
Q ss_pred --CCCcEEEEEecchh-----hhhccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch
Q 038220 297 --KNGSRIIFTTRFKD-----VAVYADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP 369 (866)
Q Consensus 297 --~~gs~iivTtR~~~-----v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (866)
+.+..||.||.... +...+ ...+.+...+.++...++...+..... ... .+....+++.+.|.+
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~---~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~---~~~~~~la~~~~g~~ 225 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRF---TKRVYVSLPDEQTRELLLNRLLQKQGS---PLD---TEALRRLAKITDGYS 225 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHC---CEEEECCCCCHHHHHHHHHHHHGGGSC---CSC---HHHHHHHHHHTTTCC
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhC---CeEEEeCCcCHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHcCCCC
Confidence 13345666665432 11211 145677777778877777766543221 111 345677888888877
Q ss_pred h-HHHHH
Q 038220 370 L-AIVVL 375 (866)
Q Consensus 370 l-ai~~i 375 (866)
- ++..+
T Consensus 226 ~~~l~~l 232 (297)
T 3b9p_A 226 GSDLTAL 232 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44433
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.69 E-value=0.00067 Score=72.19 Aligned_cols=184 Identities=17% Similarity=0.105 Sum_probs=98.2
Q ss_pred CCCCeeechhhHHHHHHHHhc----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 164 SEEDIVGLGEDMMILGNRVIH----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
.-.+++|.++.++.|.+.+.. .....+-+.|+|++|+|||+||+.+++. .... .+.+..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH-----
Confidence 345789999999988887631 1112346889999999999999999983 2211 2222221
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh-------------hHHHHHhhC---CCCC
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE-------------AWDDLKAVF---PDAK 297 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~l---~~~~ 297 (866)
++. ....+ .....+...+...-..++.+|+||+++... ....+...+ ....
T Consensus 119 -~l~----~~~~g--------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 -DLV----SKWMG--------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp -HHH----SCC-----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred -HHh----hhhcc--------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 111 10000 011222222222223578999999997431 122222222 1223
Q ss_pred CCcEEEEEecchh-hhh-ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCC-chhHHHH
Q 038220 298 NGSRIIFTTRFKD-VAV-YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGG-LPLAIVV 374 (866)
Q Consensus 298 ~gs~iivTtR~~~-v~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~ 374 (866)
.+..||.||.... +.. ........+.+...+.++-.+++......... ..+ ......|++.+.| .+-.|..
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~---~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLT---KEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 3455555665432 111 01111245778888889988888877643321 111 3455778888887 4444444
Q ss_pred Hh
Q 038220 375 LG 376 (866)
Q Consensus 375 i~ 376 (866)
+.
T Consensus 260 l~ 261 (355)
T 2qp9_X 260 VV 261 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.67 E-value=0.00069 Score=74.44 Aligned_cols=185 Identities=18% Similarity=0.153 Sum_probs=99.5
Q ss_pred CCCCCeeechhhHHHHHHHHhc----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIH----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..-.+++|.++.++.|.+.+.. .....+.+.|+|++|+|||+||+.+++. . ...-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH-
Confidence 3446799999999988877631 1112467899999999999999999983 2 112334443321
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---------h----hHHHHHhhCCC---C
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---------E----AWDDLKAVFPD---A 296 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---------~----~~~~l~~~l~~---~ 296 (866)
+.....+. .......+.. ..-..++.+|+||+++.. . ....+...+.. .
T Consensus 204 -------l~~~~~g~-----~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 204 -------LVSKWLGE-----SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp --------------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred -------HHhhhcch-----HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 11111111 1111222222 222357889999999753 1 12233333322 2
Q ss_pred CCCcEEEEEecchhhh-h-ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc-hhHHH
Q 038220 297 KNGSRIIFTTRFKDVA-V-YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL-PLAIV 373 (866)
Q Consensus 297 ~~gs~iivTtR~~~v~-~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~ 373 (866)
..+..||.||...... . ........+.+...+.++...+|......... ..+ ......|++.+.|. +-.|.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~---~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLT---EADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECC---HHHHHHHHHHTTTCCHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCC---HHHHHHHHHHcCCCCHHHHH
Confidence 3455566666543211 1 11111145777778888888888776643221 111 34556788888884 43444
Q ss_pred HH
Q 038220 374 VL 375 (866)
Q Consensus 374 ~i 375 (866)
.+
T Consensus 343 ~l 344 (444)
T 2zan_A 343 II 344 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 200
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=9.9e-06 Score=75.45 Aligned_cols=87 Identities=15% Similarity=0.255 Sum_probs=57.7
Q ss_pred CCcEEEeeeccccccccCCccCCCCCceEEEEEeec-CCCCCccccCCC----CCCCeeEEeccc-cCCCeEEECCCCCc
Q 038220 710 GLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCF-LTEDPLKELEKL----PNLRVLKLKQSS-YLGKEMVSSSGGFS 783 (866)
Q Consensus 710 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l----~~L~~L~L~~~~-~~~~~~~~~~~~~~ 783 (866)
+|++|+++++.+....+.. +..+++|++|+|++|. +++..+..++.+ ++|++|+|++|. +++..+ ..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 4566666665443333333 2457788888888884 666666666664 478899998875 544222 3356788
Q ss_pred cccEEEeecCCCCcc
Q 038220 784 QLQFLKLSNLCYLER 798 (866)
Q Consensus 784 ~L~~L~l~~~~~l~~ 798 (866)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 999999999887764
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.63 E-value=0.00063 Score=70.63 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=88.2
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
.-.+++|.++.++.+.+++.. +-...+.+.|+|++|+|||+||+.+++. ... -++.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----
Confidence 345789999988888877643 1123457899999999999999999983 221 222332
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChh----------------hHHHHHhhCC--
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKE----------------AWDDLKAVFP-- 294 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~l~-- 294 (866)
..++ .....+.. ...+...+.......+.+|++|+++... ....+...+.
T Consensus 82 ~~~l----~~~~~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 GPEL----LTMWFGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp HHHH----HHHHHTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred hHHH----HhhhcCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 2222 22222211 0122233333334568999999996421 1233333332
Q ss_pred CCCCCcEEEEEecchh-hhh-ccC--CCCCCeeccCCChHHHHHHHHHHHh
Q 038220 295 DAKNGSRIIFTTRFKD-VAV-YAD--PGSPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 295 ~~~~gs~iivTtR~~~-v~~-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
....+..||.||.... +.. ... .-...+.+...+.++-.+++.....
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 1223456666775442 211 112 1124678888898888888876654
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=5e-05 Score=72.36 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=61.5
Q ss_pred chhhHHHHHHHHhcCC-CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCC
Q 038220 171 LGEDMMILGNRVIHGG-LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGK 249 (866)
Q Consensus 171 r~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~ 249 (866)
.+...+.+.+++..-. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH
Confidence 3344445555544321 224689999999999999999998742112222 233433 34444444443332200
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEecCCC--hhhHH--HHHhhCCC-CCCCcEEEEEec
Q 038220 250 ADLDKMHMEDMKEELSNFLQERRFIIVLDDIWE--KEAWD--DLKAVFPD-AKNGSRIIFTTR 307 (866)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivTtR 307 (866)
...... + .+.-+|||||++. .+.|. .+...+.. ...|..+|+||.
T Consensus 92 --------~~~~~~----~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 92 --------TKFLKT----V-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp --------SHHHHH----H-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred --------HHHHHH----h-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 111111 2 2567899999973 33333 22222221 124667888886
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.00085 Score=72.82 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=153.4
Q ss_pred ccccCCC-eeEEEEecCCccccCc-ccccCCCCceEEEeeCCC---Ccccc-ccccCCCCccEEecCCCcccccc-cccc
Q 038220 560 SILEEYK-LLQVLDLEGVYMALID-SSIGNLIHLRYLDLRKTW---LKMLP-SSMGNLFNLQSLDLSSTLVDPIP-LVIW 632 (866)
Q Consensus 560 ~~~~~~~-~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~---i~~lp-~~i~~l~~L~~L~l~~~~~~~lp-~~i~ 632 (866)
..|.+++ .|+.+.+... +..+. ..+.++.+|+.+.+..+. ++.++ ..+..+.+|+.+.+..+ +..++ ..+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4577775 5888888653 44444 457889999999997653 66665 35677888888887655 44444 3467
Q ss_pred ccccccEEeccCccccccCCCCCCCCCCCceecceeecCCcchh-HhhccccCCCeEEEEcccchhHHHHHHhhcCCCCC
Q 038220 633 KMQQLKHVYFSEFREMVVNPPADASLPNLQTLLGICICETSCVE-QGLDKLLNLRELGLHGDLILHEEALCKWIYNLKGL 711 (866)
Q Consensus 633 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 711 (866)
.+.+|+.+.+...... .-...+..+.+|+.+.+... .. .+. ..+. ..+|+++.+........ ..++..+.++
T Consensus 135 ~c~~L~~i~lp~~~~~-I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~i~---~~af~~c~~l 207 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTS-VADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTRIG---TNAFSECFAL 207 (394)
T ss_dssp TCTTCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCEEC---TTTTTTCTTC
T ss_pred hhcccccccccceeee-ecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccccc---cchhhhcccc
Confidence 8899999988754322 23344667888887766433 11 111 1122 35788887765431100 1235566777
Q ss_pred cEEEeeeccccc------cccC----Cc--cCCCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeEEECC
Q 038220 712 QCLKMQSRITYT------VDLS----DV--QNFPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEMVSSS 779 (866)
Q Consensus 712 ~~L~l~~~~~~~------~~l~----~~--~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 779 (866)
............ .... .. ......+..+.+-.. +.......+..+.+|+.+.+..+ ... .-...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~-~~~-I~~~aF 284 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS-VVS-IGTGAF 284 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT-CCE-ECTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccc-cce-ecCccc
Confidence 776655421100 0000 00 000112222222110 11111234667889999998433 211 112345
Q ss_pred CCCccccEEEeecCCCCcceEE-ccCcccccceeeEeecccCCccC-CCccCCCCCCEEEEeCC
Q 038220 780 GGFSQLQFLKLSNLCYLERWRI-EEGAMCNLRRLEIIECMRLKIVP-SGLWPLTTLSNLKLGYM 841 (866)
Q Consensus 780 ~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~ 841 (866)
.++++|+.+.+.. .+..++. .+..|.+|+.+.|..+ ++.+. ..+..|.+|+.+.|..+
T Consensus 285 ~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 285 MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT
T ss_pred ccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc
Confidence 6789999999863 3444432 3457889999998743 55554 46889999999999643
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=2.1e-05 Score=75.25 Aligned_cols=107 Identities=11% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCCCCceEEEecCC-C------CCccccccCCCeeEEEEecCCccc-----cCcccccCCCCceEEEeeCCCCc-----c
Q 038220 541 RKSSRVRSLLFFDI-S------EPVGSILEEYKLLQVLDLEGVYMA-----LIDSSIGNLIHLRYLDLRKTWLK-----M 603 (866)
Q Consensus 541 ~~~~~lr~L~~~~~-~------~~~~~~~~~~~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~-----~ 603 (866)
...+.+++|.+.++ . ..+...+...+.|++|+|++|.+. .+...+...+.|++|+|++|.|+ .
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45678888888875 2 123345677889999999999874 34555666788999999999987 3
Q ss_pred ccccccCCCCccEEec--CCCcccc-----ccccccccccccEEeccCccc
Q 038220 604 LPSSMGNLFNLQSLDL--SSTLVDP-----IPLVIWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 604 lp~~i~~l~~L~~L~l--~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~ 647 (866)
+...+....+|++|+| ++|.++. +...+...++|++|++++|..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6778888899999999 7786653 455667778999999988764
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.54 E-value=4.9e-05 Score=69.20 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=33.6
Q ss_pred CeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 167 DIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789999988888887642111234779999999999999999884
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00025 Score=85.09 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCc---cccCCC-C-ceEEEEeCCCCCHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSS---DVKKHF-D-CCAWAYVSQEYRKWEILQD 239 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~f-~-~~~wv~v~~~~~~~~~~~~ 239 (866)
-..++||+++++++++.+.... ...+.|+|.+|+||||+|+.+++.. .+.... + .++++.++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 3568999999999999997754 2357899999999999999998731 010111 1 133333322100
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHh-c-cCcEEEEEecCCChh----------hHHHHHhhCCCCCCCcEEEEEec
Q 038220 240 LCKKVLGLGKADLDKMHMEDMKEELSNFL-Q-ERRFIIVLDDIWEKE----------AWDDLKAVFPDAKNGSRIIFTTR 307 (866)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~-~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR 307 (866)
+. . ...........+...+ . +++.+|++|+++... ..+.+...+.. .+..+|.+|.
T Consensus 240 ------g~---~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ------GA---K-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ------cC---c-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 00 0 0001122222222222 2 367899999997532 11223333322 2334555554
Q ss_pred chhh-----hhccCCCCCCeeccCCChHHHHHHHHHH
Q 038220 308 FKDV-----AVYADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 308 ~~~v-----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
.... ..........+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3322 1111122256899999999999988643
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00054 Score=70.83 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=88.5
Q ss_pred echhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCc-ccc-CCCCceEEEEeCC-CCCHHHHHHHHHHHHhc
Q 038220 170 GLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSS-DVK-KHFDCCAWAYVSQ-EYRKWEILQDLCKKVLG 246 (866)
Q Consensus 170 Gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~ 246 (866)
|-++.++.+...+..+. .....++|+.|+||||+|+.+.+.. ... .+.+ ..++..+. .... +..+++.+.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~i-d~ir~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGI-DDIRTIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCH-HHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCH-HHHHHHHHHHhh
Confidence 34455667777776665 5788999999999999999997621 011 2333 34443322 1222 222333333322
Q ss_pred CCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecch-hhhhccCCCCCCee
Q 038220 247 LGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFK-DVAVYADPGSPPYE 323 (866)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~ 323 (866)
.. ..+++-++|+|+++.. ...+.+...+-.....+.+|++|.+. .+..-+... .++
T Consensus 77 ~p-------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~ 135 (305)
T 2gno_A 77 SP-------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFR 135 (305)
T ss_dssp CC-------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEE
T ss_pred cc-------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEe
Confidence 10 0245778999999754 45666776666556677788777544 332222222 899
Q ss_pred ccCCChHHHHHHHHHHH
Q 038220 324 LCLLNEEDSCELLFKKA 340 (866)
Q Consensus 324 l~~L~~~~~~~Lf~~~~ 340 (866)
+.+++.++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.00096 Score=67.54 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCCCeeechhhHHHHHHHHh---cC-------CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 164 SEEDIVGLGEDMMILGNRVI---HG-------GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.-.+++|.+..++++.+.+. .. ....+-+.|+|++|+||||+|+.+++.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34578998887776655432 21 011345889999999999999999973
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.38 E-value=0.00038 Score=77.10 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCC------Cc-eEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHF------DC-CAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~-~~wv~v~~~~~~~~~~~ 238 (866)
..+|||+++++++...+.... ..-+.|+|++|+|||++|+.++.. +...+ +. .+.+.++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~--------- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT--------- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc---------
Confidence 469999999999999997643 235679999999999999999873 21111 11 22222220
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhcc---
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYA--- 315 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~--- 315 (866)
...+ +. ......+.. ..-..++.+|++| ...+....+...+.. ...++|.+|.........
T Consensus 247 ----~~~g----~~-e~~~~~~~~---~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 247 ----KYRG----EF-EDRLKKVMD---EIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ---------------CTTHHHHHH---HHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ----cccc----hH-HHHHHHHHH---HHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 0000 00 011222222 2223567888999 222333334444432 234566555544311110
Q ss_pred ---CCCCCCeeccCCChHHHHHHHHHHH
Q 038220 316 ---DPGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 316 ---~~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
.....++.+...+.++...++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 0111468999999999999997644
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.0006 Score=71.35 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=42.4
Q ss_pred CeeechhhHHHHHHHHhcCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 167 DIVGLGEDMMILGNRVIHGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
.++|.+..++.+...+.... .....+.|+|++|+||||+|+.+++. ....-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccc
Confidence 57788888888887776531 12358999999999999999999873 222222345555554
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.35 E-value=0.00037 Score=77.12 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=87.1
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
.+++|.+..++++.+++... ....+-+.|+|++|+|||++|+.+.+. .... .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEchH-----
Confidence 46899999999988877532 223456899999999999999999873 2222 23333211
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh-------------hhHHHHHhhCC--CCCCC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK-------------EAWDDLKAVFP--DAKNG 299 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~l~--~~~~g 299 (866)
+. ..+ .......+...+.....+++.+|+||+++.. .....+...+. ....+
T Consensus 274 -l~----~~~--------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 -IM----SKL--------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -HH----TSC--------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -hh----hhh--------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11 000 0001122333344444567789999998311 11233333332 12234
Q ss_pred cEEEEEecchh-hhhccC---CCCCCeeccCCChHHHHHHHHHHHh
Q 038220 300 SRIIFTTRFKD-VAVYAD---PGSPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 300 s~iivTtR~~~-v~~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
..||.||.... +..... .....+.+...+.++-.+++...+.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 45555665442 221111 1124588889999999999987764
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0029 Score=67.00 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=94.2
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
.=.++.|.++.+++|.+.+.- +-..++-+.++|++|.|||.||+.+++. .... .+.+..+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCK---FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCE---EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCC---ceEEEhHHhhc
Confidence 345788988888877766532 2223567889999999999999999983 2222 23343332211
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh----------h------hHHHHHhhCC--
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK----------E------AWDDLKAVFP-- 294 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~------~~~~l~~~l~-- 294 (866)
. ........+.......-...+++|++|+++.. . ....+...+.
T Consensus 221 k------------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 221 K------------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp S------------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred c------------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 0 00001111222222222357899999998732 0 1122222222
Q ss_pred CCCCCcEEEEEecchhhh-h-cc--CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 295 DAKNGSRIIFTTRFKDVA-V-YA--DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 295 ~~~~gs~iivTtR~~~v~-~-~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
....+..||.||...+.. . .. +.-...+.++.-+.++-.++|..+.-.... ...-+ ..+|++.+.|.
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l---~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL---TRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC---CSSCC----HHHHHHHCCSC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC---CccCC----HHHHHHHCCCC
Confidence 223344566666544321 1 11 122367888888888888888766533221 11112 34566777664
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.31 E-value=0.002 Score=76.48 Aligned_cols=154 Identities=15% Similarity=0.219 Sum_probs=85.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCcc---cc-CCCCceEEE-EeCCCCCHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSD---VK-KHFDCCAWA-YVSQEYRKWEILQDL 240 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~-~~f~~~~wv-~v~~~~~~~~~~~~i 240 (866)
..++||+++++++.+.+.... ..-+.|+|.+|+||||+|+.+++... +. ...+..+|. .++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 468999999999999998753 23568999999999999999987310 00 011222221 11110
Q ss_pred HHHHhcCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEecCCCh--------hh---HHHHHhhCCCCCCCcEEEEEecc
Q 038220 241 CKKVLGLGKADLDKMHMEDMKEELSNFL-QERRFIIVLDDIWEK--------EA---WDDLKAVFPDAKNGSRIIFTTRF 308 (866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~--------~~---~~~l~~~l~~~~~gs~iivTtR~ 308 (866)
..+. . ...........+.+.+ ..++.+|++|+++.. .. ...+...+. ..+..+|.+|..
T Consensus 254 ---~~~~---~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 ---LAGT---K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_dssp ----CCC---C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECH
T ss_pred ---hccc---c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCc
Confidence 0000 0 0112233333333333 345789999999754 12 222333332 234556666654
Q ss_pred hhhhhccCC------CCCCeeccCCChHHHHHHHHHHH
Q 038220 309 KDVAVYADP------GSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 309 ~~v~~~~~~------~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
......... ....+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 433211111 11357888999999888886543
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0033 Score=67.74 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=85.3
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 165 EEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
=.++.|.++.+++|.+.+.- +-..++-|.++|++|.|||+||+.+++. .... .+.+..+.-.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~---~~~v~~s~l~sk 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGAN---FIFSPASGIVDK 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGTCCS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehhhhccc
Confidence 35688988888887776542 1223578999999999999999999983 2222 233333322110
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHH-HHHhccCcEEEEEecCCCh------------h----hHHHHHhhCC--
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEEL-SNFLQERRFIIVLDDIWEK------------E----AWDDLKAVFP-- 294 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~------------~----~~~~l~~~l~-- 294 (866)
... ........+ ...-...+++|++|+++.. . ....+...+.
T Consensus 255 ------------------~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 255 ------------------YIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp ------------------SSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ------------------cch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 000 011122222 2222357899999998631 0 1223333332
Q ss_pred CCCCCcEEEEEecchhhhh-c-cCCC--CCCeeccCCChHHHHHHHHHHHhC
Q 038220 295 DAKNGSRIIFTTRFKDVAV-Y-ADPG--SPPYELCLLNEEDSCELLFKKAFA 342 (866)
Q Consensus 295 ~~~~gs~iivTtR~~~v~~-~-~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~ 342 (866)
....+..||.||...+... . ..++ ...+.++.-+.++-.++|..+...
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 2233456777775443221 1 1111 145777777788888888766543
No 215
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=0.02 Score=60.12 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCeeechhhHHHHHHHHhcC---CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHG---GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCK 242 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 242 (866)
..++|.+..++.+...+..+ +.....+.|+|++|+||||||+.+++. ....|. ... .....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhc----------
Confidence 46789887777777666543 223457899999999999999999983 221111 111 11100
Q ss_pred HHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCCCC------------------CCcEE
Q 038220 243 KVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPDAK------------------NGSRI 302 (866)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~------------------~gs~i 302 (866)
...++...+ ..+ .++-++++|++... ...+.+...+.... ....+
T Consensus 89 -------------~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 89 -------------KQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -------------SHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -------------CHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 011111111 112 23456777887543 22333322211110 01122
Q ss_pred E-EEecchhhhhccCCC-CCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 038220 303 I-FTTRFKDVAVYADPG-SPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIV 373 (866)
Q Consensus 303 i-vTtR~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 373 (866)
+ .|++...+....... .....+++.+.++-.+++.+.+..... .. -.+.+..|++.+.|.|-.+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~---~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EI---EDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CB---CHHHHHHHHHTSTTCHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---Cc---CHHHHHHHHHhcCCChHHHH
Confidence 2 233433222111111 134789999999999999887643221 11 14678889999999996543
No 216
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.29 E-value=0.0024 Score=68.76 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=33.2
Q ss_pred CCCCceEEEEEeecCCCCCccccCCCCCCCeeEEeccccCCCeE-EECCCCCccccEEEeecCCCCcceEE-ccCccccc
Q 038220 732 FPPNLTELSLQFCFLTEDPLKELEKLPNLRVLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSNLCYLERWRI-EEGAMCNL 809 (866)
Q Consensus 732 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L 809 (866)
.+.+|+.+.+..+ +.......+..+++|+.+.+.++.+. .+ ...+.+|.+|+.+.|.. .+..+.. .+..|.+|
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKAL 335 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccc--eehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCC
Confidence 3445555555332 11122223445556666665433322 11 12344555566655542 1232221 22344555
Q ss_pred ceeeE
Q 038220 810 RRLEI 814 (866)
Q Consensus 810 ~~L~l 814 (866)
+.+.+
T Consensus 336 ~~i~i 340 (379)
T 4h09_A 336 STISY 340 (379)
T ss_dssp CCCCC
T ss_pred CEEEE
Confidence 55554
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=0.00013 Score=73.37 Aligned_cols=61 Identities=23% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCCCceEEEeeCCCCccc---cccccCCCCccEEecCCCccccccccccccc--cccEEeccCcccc
Q 038220 587 NLIHLRYLDLRKTWLKML---PSSMGNLFNLQSLDLSSTLVDPIPLVIWKMQ--QLKHVYFSEFREM 648 (866)
Q Consensus 587 ~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~ 648 (866)
++++|+.|+|++|.++.+ |..++.+++|++|+|++|.+..+. .+..+. +|++|++.+|...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 345555555555555432 233445555555555555444441 233333 5555555555544
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.0017 Score=71.67 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=56.8
Q ss_pred EEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe---------cc----h-h----hhhccCCCCCCeeccCCChHHH
Q 038220 273 FIIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTT---------RF----K-D----VAVYADPGSPPYELCLLNEEDS 332 (866)
Q Consensus 273 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt---------R~----~-~----v~~~~~~~~~~~~l~~L~~~~~ 332 (866)
-++++|+++.. +..+.+...+...... .+|+.| .+ . . +...+ ..+.+.+++.++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~----~~~~~~~~~~~e~ 371 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV----MIIRTMLYTPQEM 371 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE----EEEECCCCCHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc----ceeeCCCCCHHHH
Confidence 38999999754 5677787777655444 344344 11 0 0 21222 4579999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHc-CCchhHHHHH
Q 038220 333 CELLFKKAFAGGNAMSSLPPWSRELGKQIVKKC-GGLPLAIVVL 375 (866)
Q Consensus 333 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~i 375 (866)
.+++...+..... ..+ .+....|++.+ +|.|-.+..+
T Consensus 372 ~~iL~~~~~~~~~---~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 372 KQIIKIRAQTEGI---NIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHHTC---CBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHHhCC---CCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 9999877532211 112 35567778877 7877654433
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.19 E-value=0.00042 Score=67.28 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=34.6
Q ss_pred hHHHHHHHHhcCCCc--eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe
Q 038220 174 DMMILGNRVIHGGLR--RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV 227 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v 227 (866)
.++.+.+++...... ...+.|+|++|+||||||+.+++. .......++|+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 444555665544221 268899999999999999999983 3333344666654
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.19 E-value=0.00018 Score=72.46 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=60.9
Q ss_pred cCCCeeEEEEecCCccccC---cccccCCCCceEEEeeCCCCccccccccCCC--CccEEecCCCcccc-cc-------c
Q 038220 563 EEYKLLQVLDLEGVYMALI---DSSIGNLIHLRYLDLRKTWLKMLPSSMGNLF--NLQSLDLSSTLVDP-IP-------L 629 (866)
Q Consensus 563 ~~~~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~-lp-------~ 629 (866)
.+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4577899999999988654 466778999999999999998773 445555 99999999996653 33 2
Q ss_pred cccccccccEEec
Q 038220 630 VIWKMQQLKHVYF 642 (866)
Q Consensus 630 ~i~~l~~L~~L~l 642 (866)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3667888888863
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.18 E-value=0.0014 Score=66.69 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|....+.++.+.+.........+.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999988888777542112246789999999999999999984
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0026 Score=68.38 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=91.7
Q ss_pred CCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 166 EDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||+||+.+++. .... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCC---eEEEEhHHhhc--
Confidence 4688988888887765431 2224677889999999999999999983 3222 23333322111
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--------h--------hHHHHHhhCC--CC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--------E--------AWDDLKAVFP--DA 296 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------~--------~~~~l~~~l~--~~ 296 (866)
. ........+.......-...+++|++|+++.. . ....+...+. ..
T Consensus 282 ------------k----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ------------K----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ------------C----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ------------c----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 00001111222222222357899999998632 0 1112222222 22
Q ss_pred CCCcEEEEEecchhhh-h-cc--CCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCc
Q 038220 297 KNGSRIIFTTRFKDVA-V-YA--DPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGL 368 (866)
Q Consensus 297 ~~gs~iivTtR~~~v~-~-~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 368 (866)
..+..||.||...... . .. +.-...+.+..-+.++-.++|..+.-.... ...-+ ...|++.+.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l---~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV---ERGIR----WELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB---CSSCC----HHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC---CCCCC----HHHHHHHCCCC
Confidence 2344556666433321 1 11 122356788888888888888766543221 11112 24566777664
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.13 E-value=0.00084 Score=69.63 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999988887653222346779999999999999999873
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0044 Score=66.69 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 164 SEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 164 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
.=.++.|.++.+++|.+.+.- +-..++-|.++|++|.|||.||+.+++. .... .+.+..+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~---f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNAT---FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCE---EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCC---EEEEehhhhhh
Confidence 345788999988888766432 1223578899999999999999999983 2222 23333322111
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH-HhccCcEEEEEecCCCh-------h---------hHHHHHhhCCC
Q 038220 233 KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN-FLQERRFIIVLDDIWEK-------E---------AWDDLKAVFPD 295 (866)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-------~---------~~~~l~~~l~~ 295 (866)
. ... ......+.+.. .-...+++|++|+++.. . ....+...+..
T Consensus 254 --------------~----~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 254 --------------M----YIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp --------------S----CSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred --------------c----ccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 0 000 01112222222 22346899999998521 0 11223333332
Q ss_pred --CCCCcEEEEEecchhhhh-cc-CCC--CCCeeccCCChHHHHHHHHHHHh
Q 038220 296 --AKNGSRIIFTTRFKDVAV-YA-DPG--SPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 296 --~~~gs~iivTtR~~~v~~-~~-~~~--~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
...+-.||.||...+... .+ .++ ...+.++.-+.++-.++|..+.-
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 223445555665443221 11 111 14577887888888888866553
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.02 E-value=0.00052 Score=62.65 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+.|+|..|+|||||++.+++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999999984
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.00 E-value=0.0041 Score=68.15 Aligned_cols=175 Identities=16% Similarity=0.080 Sum_probs=92.5
Q ss_pred CCCeeechhhHHHHHHHHhc---C-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 165 EEDIVGLGEDMMILGNRVIH---G-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
-.+++|.++.++++.+.+.. . ..-.+-+.|+|++|+|||+||+.+++. .... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCC---EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCC---eeeCCHHHHHHH-
Confidence 35789998877776665432 1 011234889999999999999999983 2222 233333322110
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh----------------hhHHHHHhhCC--CC
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK----------------EAWDDLKAVFP--DA 296 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~l~--~~ 296 (866)
........+...+.......+.+|+||+++.. .....+...+. ..
T Consensus 89 -----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 -----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred -----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 00001122233344444567899999998532 11233332221 12
Q ss_pred CCCcEEEEEecchhhhh--ccCC--CCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch
Q 038220 297 KNGSRIIFTTRFKDVAV--YADP--GSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP 369 (866)
Q Consensus 297 ~~gs~iivTtR~~~v~~--~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (866)
..+..||.||...+... ...+ ....+.+...+.++-.+++..+.....- ..... ...++..+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l---~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL---AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB---CTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC---cchhh----HHHHHHhcCCCc
Confidence 23556666776554321 1111 1136777888877777787665533211 11111 234677777766
No 227
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0098 Score=63.21 Aligned_cols=152 Identities=18% Similarity=0.130 Sum_probs=81.8
Q ss_pred CCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH
Q 038220 166 EDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW 234 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 234 (866)
.++.|.++.+++|.+.+.- +-...+-|.++|++|.|||.||+.+++. ....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4678888888887776532 1123567999999999999999999983 22222 2333222110
Q ss_pred HHHHHHHHHHhcCCCCccccCCHHHHHHHHHH-HhccCcEEEEEecCCCh-------------h---hHHHHHhhCC--C
Q 038220 235 EILQDLCKKVLGLGKADLDKMHMEDMKEELSN-FLQERRFIIVLDDIWEK-------------E---AWDDLKAVFP--D 295 (866)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~l~--~ 295 (866)
. ... +.+.....+.. .-...+++|++|+++.. . ....+...+. .
T Consensus 255 ------------k----~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 ------------K----YLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ------------S----SSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ------------c----cCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 000 11122222222 22356899999998631 0 1122222221 2
Q ss_pred CCCCcEEEEEecchhhhh-cc-CCC--CCCeeccCCChHHHHHHHHHHHh
Q 038220 296 AKNGSRIIFTTRFKDVAV-YA-DPG--SPPYELCLLNEEDSCELLFKKAF 341 (866)
Q Consensus 296 ~~~gs~iivTtR~~~v~~-~~-~~~--~~~~~l~~L~~~~~~~Lf~~~~~ 341 (866)
...+..||.||...+... .+ .++ ...+.++.-+.++-.++|..+.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc
Confidence 233455666665443321 11 111 13467777777888888876653
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.0016 Score=77.06 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=79.2
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCc---cccCCCCceEEEEeCCCCCHHHHHHHHH
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSS---DVKKHFDCCAWAYVSQEYRKWEILQDLC 241 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 241 (866)
-..+|||+++++++...+.... ..-+.++|++|+|||++|+.+.+.. .+-......-++.+.-.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g----------- 245 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------- 245 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc-----------
Confidence 3469999999999999997753 2347899999999999999998731 00000011111111110
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhhhccC-----
Q 038220 242 KKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVAVYAD----- 316 (866)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~----- 316 (866)
....+ + ....... .+......++.+|++| ...+..+.+...+. ....++|.+|..........
T Consensus 246 ~~~~G----~-~e~~l~~---~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 246 TKYRG----E-FEDRLKK---VMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ------------CTTHHH---HHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ccccc----h-HHHHHHH---HHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHH
Confidence 00000 0 0111222 2233333678899999 22222233333333 22355666665444211110
Q ss_pred -CCCCCeeccCCChHHHHHHHHHHH
Q 038220 317 -PGSPPYELCLLNEEDSCELLFKKA 340 (866)
Q Consensus 317 -~~~~~~~l~~L~~~~~~~Lf~~~~ 340 (866)
.....+.+...+.++..+++....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111468999999999999997543
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.76 E-value=0.0006 Score=69.54 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCCeeechhhHHHHHHHHhc----------CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIH----------GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-.+++|.++.++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35789998888877776541 1111234789999999999999999983
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.74 E-value=0.024 Score=60.84 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=67.6
Q ss_pred hccccCCCeEEEEcccchhHHHHHHhhcCCCCCcEEEeeeccccccccCCccCCCCCceEEEEEeecCCCCCccccCCCC
Q 038220 679 LDKLLNLRELGLHGDLILHEEALCKWIYNLKGLQCLKMQSRITYTVDLSDVQNFPPNLTELSLQFCFLTEDPLKELEKLP 758 (866)
Q Consensus 679 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~ 758 (866)
+..+.+|+.+.+..+-..-. ..++..+.+|+.+.+..+- ...-...+..+++|+.+.+.++.+..-....+..+.
T Consensus 236 f~~~~~L~~i~lp~~v~~I~---~~aF~~~~~l~~i~l~~~i--~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIG---SFLLQNCTALKTLNFYAKV--KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEEC---TTTTTTCTTCCEEEECCCC--SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEeC---ccccceeehhccccccccc--eeccccccccccccccccccccccceehhhhhcCCC
Confidence 55667788777754321000 1245667788888875531 111123455688999999988766554455788899
Q ss_pred CCCeeEEeccccCCCeE-EECCCCCccccEEEeec
Q 038220 759 NLRVLKLKQSSYLGKEM-VSSSGGFSQLQFLKLSN 792 (866)
Q Consensus 759 ~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 792 (866)
+|+.+.|.. ++. .+ ...+.+|.+|+.+.+..
T Consensus 311 ~L~~i~lp~-~l~--~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 311 KLSSVTLPT-ALK--TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEECCT-TCC--EECTTTTTTCTTCCCCCCCT
T ss_pred CCCEEEcCc-ccc--EEHHHHhhCCCCCCEEEECC
Confidence 999999943 332 22 23567888999888864
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.0045 Score=73.23 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=81.4
Q ss_pred CCeeechhhHHHHHHHHhcCC-------CceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHH
Q 038220 166 EDIVGLGEDMMILGNRVIHGG-------LRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 238 (866)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+.+. ....-...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 468999999988888876421 12347999999999999999999873 21212234555554432100
Q ss_pred HHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh--hhHHHHHhhCCC-----------CCCCcEEEEE
Q 038220 239 DLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK--EAWDDLKAVFPD-----------AKNGSRIIFT 305 (866)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~gs~iivT 305 (866)
.. ....+...++. ...-+|+||++... +..+.+...+.. ......||+|
T Consensus 565 -------------~~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 -------------ST--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp -------------CC--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred -------------cc--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00 01111122221 23458999999754 334444443321 1134578888
Q ss_pred ecch-----hh----hh-----ccCCCCCCeeccCCChHHHHHHHHHH
Q 038220 306 TRFK-----DV----AV-----YADPGSPPYELCLLNEEDSCELLFKK 339 (866)
Q Consensus 306 tR~~-----~v----~~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~ 339 (866)
|... .+ .. ....-...+.+.+++.++..+++...
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 8621 10 00 01111146777888877777766543
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.56 E-value=0.0053 Score=71.40 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=92.8
Q ss_pred CCCeeechhhHHHHHHHHh----cC-------CCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH
Q 038220 165 EEDIVGLGEDMMILGNRVI----HG-------GLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK 233 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~----~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 233 (866)
-.++.|.++.+++|.+.+. .. -..++-|.++|++|+|||+||+.+++. ...+ .+.+..+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH----
Confidence 3468888888887777653 11 123578999999999999999999984 3222 23333211
Q ss_pred HHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhccCcEEEEEecCCCh---------h----hHHHHHhhCCC--CCC
Q 038220 234 WEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQERRFIIVLDDIWEK---------E----AWDDLKAVFPD--AKN 298 (866)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---------~----~~~~l~~~l~~--~~~ 298 (866)
+ ... ........+...........+.+|+||+++.. + ....+...+.. ...
T Consensus 274 ------l----~sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 ------I----MSK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ------H----HSS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred ------h----hcc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 1 110 00001122333333333467899999998632 1 11222222211 122
Q ss_pred CcEEEEEecch-hhhhccC---CCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCch
Q 038220 299 GSRIIFTTRFK-DVAVYAD---PGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLP 369 (866)
Q Consensus 299 gs~iivTtR~~-~v~~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 369 (866)
+..||.||... .+-..+. .-...+++..-+.++-.++|..+...... ....+ ..+|++++.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~---~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL---ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE---CTTCC----HHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC---CcccC----HHHHHHhcCCCC
Confidence 33445555433 2222211 11245788888888888888765432211 11112 345777777664
No 233
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.0015 Score=66.74 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=46.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe--CCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV--SQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 266 (866)
.+++.|+|++|+||||||.++... .-..++|++. .+..+ .. ..+.+...+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~-------------~~------~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS-------------GY------NTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST-------------TC------BCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh-------------hh------hcCHHHHHHHHHH
Confidence 357889999999999999999873 1123567776 22211 00 0245666666667
Q ss_pred HhccCcEEEEEecCCC
Q 038220 267 FLQERRFIIVLDDIWE 282 (866)
Q Consensus 267 ~L~~k~~LlVlDdv~~ 282 (866)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 776666 999999954
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.51 E-value=0.0075 Score=59.08 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=50.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--------CCCcccc-CCHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL--------GKADLDK-MHMEDM 260 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~--------~~~~~~~-~~~~~~ 260 (866)
.++.|+|.+|+||||||..+.. ..-..++|++....++...+.. +.+..... ....... ....+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 4899999999999999999987 1124578888776556554433 32221110 0000011 111234
Q ss_pred HHHHHHHhccCcEEEEEecCCC
Q 038220 261 KEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 261 ~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
...++..+..+.-+||+|.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 4444554444477889998753
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.31 E-value=0.05 Score=55.12 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCeeechhhHHHHHHHHhc---C-------C-CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIH---G-------G-LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~---~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-.++.|.++.+++|.+.+.. . + .-.+-+.|+|++|+||||||+.++..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34677888877777665421 0 0 01122999999999999999999983
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.31 E-value=0.019 Score=63.34 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCCCeeechhhHHHHHHHHh---cCC-------CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 163 TSEEDIVGLGEDMMILGNRVI---HGG-------LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..-.+++|.++.+.++.+... ... .-.+-+.|+|++|+||||||+.+++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344679999887776655543 210 01223899999999999999999983
No 237
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0081 Score=64.58 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCCCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..-.++.|.++.+++|.+.+.- +-...+-+.++|++|.|||+||+.+++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3345788999988888776642 2223567899999999999999999983
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.10 E-value=0.0084 Score=61.69 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999983
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.07 E-value=0.016 Score=60.76 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=55.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~ 266 (866)
-+++.|+|++|+||||||.+++.. ....-..++|++....++.. .++.+...... -....+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 469999999999999999999873 22222347888877766653 34444432100 1122345666666665
Q ss_pred Hhc-cCcEEEEEecCCC
Q 038220 267 FLQ-ERRFIIVLDDIWE 282 (866)
Q Consensus 267 ~L~-~k~~LlVlDdv~~ 282 (866)
.+. .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 554 4566899998753
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.05 E-value=0.018 Score=67.97 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=38.3
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIH-----------GGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-.+++|.++.++++.+++.. +-.....|.|+|++|+||||||+.+.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35789999999988888753 1123457899999999999999999983
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.00 E-value=0.016 Score=57.34 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=60.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC----c--------------
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA----D-------------- 251 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~----~-------------- 251 (866)
.++.|+|.+|+|||||++.++.. ....-..++|+.... ....+...+. .+...... .
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 48999999999999999999853 111112466665433 3444433332 22211000 0
Q ss_pred --cccCCHHHHHHHHHHHhcc-CcE--EEEEecCC-----ChhhHHHHHhhCCC--CCCCcEEEEEecch
Q 038220 252 --LDKMHMEDMKEELSNFLQE-RRF--IIVLDDIW-----EKEAWDDLKAVFPD--AKNGSRIIFTTRFK 309 (866)
Q Consensus 252 --~~~~~~~~~~~~l~~~L~~-k~~--LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 309 (866)
....+..++...+...+.. +.- ++|+|... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0112455665555555432 334 99999975 32222333222221 12467788888754
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.90 E-value=0.027 Score=66.70 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.++.++.+...+... ......+.++|++|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 35889999888887776531 11245799999999999999999987
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.80 E-value=0.063 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.78 E-value=0.008 Score=67.67 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=34.2
Q ss_pred CCeeechhhHHHHHHHHhc----CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIH----GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|.++-...+.+.+.- .......+.|+|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578888777776554431 111345899999999999999999987
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.74 E-value=0.019 Score=57.16 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=50.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHHHHHHHHhcCC-----CC-ccccCCHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQDLCKKVLGLG-----KA-DLDKMHMED 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-----~~-~~~~~~~~~ 259 (866)
.++.|+|.+|+|||||+..+........ .-..++|+.....++...+. .+++.+.... .- -....+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 4999999999999999999887311111 12468888877755554432 3333332210 00 001112222
Q ss_pred ---HHHHHHHHhc-cCcEEEEEecCC
Q 038220 260 ---MKEELSNFLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 260 ---~~~~l~~~L~-~k~~LlVlDdv~ 281 (866)
....+.+.+. .+.-+||+|.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2233444443 356788888874
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.72 E-value=0.019 Score=68.78 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=36.7
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHG-------GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.+..++.+...+... ......+.|+|+.|+|||++|+.+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999888888777542 11235889999999999999999987
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.72 E-value=0.041 Score=57.90 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=36.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccC----CCCceEEEEeCCCCCHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKK----HFDCCAWAYVSQEYRKWEILQ 238 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~ 238 (866)
-.++.|+|.+|+||||||..++....... .-..++|++....++...+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 46999999999999999999886321111 224688999888777665543
No 248
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.58 E-value=0.087 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 249
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.47 E-value=0.0097 Score=57.77 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.+.+........+++|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555443323457999999999999999999987
No 250
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.46 E-value=0.047 Score=56.66 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=37.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
.++.|.|.+|+||||||..++.+...+. ..++|++.. .+..++...+......
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~~~ 121 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTAGS 121 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 4899999999999999998886422222 467777655 4577777777665433
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.44 E-value=0.028 Score=58.69 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCC----CCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKH----FDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
.++.|+|.+|+||||||.+++........ -..++|++....++...+.. +++.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 58999999999999999998863111110 24689998888777665543 34443
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.38 E-value=0.15 Score=53.66 Aligned_cols=155 Identities=10% Similarity=-0.060 Sum_probs=96.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH-
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF- 267 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~- 267 (866)
.++..++|..|.||++.++.+.+.. ....|+....+.+....+. .++.+.+...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------------------------~~l~~~~~~~p 72 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTDW------------------------NAIFSLCQAMS 72 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCCH------------------------HHHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCCH------------------------HHHHHHhcCcC
Confidence 4688999999999999998887631 1123432222223222222 2333222211
Q ss_pred hccCcEEEEEecCCC---hhhHHHHHhhCCCCCCCcEEEEEecc-------hhhhhccCCCCCCeeccCCChHHHHHHHH
Q 038220 268 LQERRFIIVLDDIWE---KEAWDDLKAVFPDAKNGSRIIFTTRF-------KDVAVYADPGSPPYELCLLNEEDSCELLF 337 (866)
Q Consensus 268 L~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iivTtR~-------~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~ 337 (866)
+-+++-++|+|+++. ...++.+...+.....++.+|+++.. ..+...+......++..+++.++....+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 235677889999865 35678888887766667878777643 22333333334678999999999888877
Q ss_pred HHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 038220 338 KKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVV 374 (866)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 374 (866)
+.+...+- . --.+.+..+++.++|.+.++..
T Consensus 153 ~~~~~~g~---~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNL---E---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTC---E---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCC---C---CCHHHHHHHHHHhchHHHHHHH
Confidence 76643221 1 1146778899999998877654
No 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.38 E-value=0.25 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.29 E-value=0.016 Score=55.92 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHhcC-CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 171 LGEDMMILGNRVIHG-GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 171 r~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
|++.++.+.+.+... .....+++|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667777777653 23467999999999999999999886
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.29 E-value=0.017 Score=54.43 Aligned_cols=114 Identities=14% Similarity=0.065 Sum_probs=58.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhcC----CCC-cccc-------
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQE---YRKWEILQDLCKKVLGL----GKA-DLDK------- 254 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~~~~~----~~~-~~~~------- 254 (866)
..|.|++..|.||||.|--+.- +...+=-.+.++..-+. .....++ +.+... +.. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 4667777778999999976664 22222223444433321 1222222 333100 000 0000
Q ss_pred CCHHHHHHHHHHHhccCc-EEEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEecch
Q 038220 255 MHMEDMKEELSNFLQERR-FIIVLDDIWEK-----EAWDDLKAVFPDAKNGSRIIFTTRFK 309 (866)
Q Consensus 255 ~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (866)
..........++.+.+.+ =|||||++... -..+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 011222334555555544 49999998432 23355555555555567899999976
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.26 E-value=0.036 Score=57.89 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=53.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccC---------CC-----CceEEEEeCCCCCHHHHHHHHHHHHhcCCC-----
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKK---------HF-----DCCAWAYVSQEYRKWEILQDLCKKVLGLGK----- 249 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----- 249 (866)
-.++.|+|.+|+||||||.+++....... .. ..++|++....++...+.. +++.+.....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46999999999999999998876311111 11 4689998888877766553 3444432100
Q ss_pred -CccccCCHH---HHHHHHHHHhcc--CcEEEEEecCC
Q 038220 250 -ADLDKMHME---DMKEELSNFLQE--RRFIIVLDDIW 281 (866)
Q Consensus 250 -~~~~~~~~~---~~~~~l~~~L~~--k~~LlVlDdv~ 281 (866)
.-....+.+ ++...+...+.. +.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 000111222 234445555543 45588888874
No 257
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.23 E-value=0.0058 Score=59.53 Aligned_cols=113 Identities=10% Similarity=-0.013 Sum_probs=59.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
-.++.|+|..|+||||++..+... ...+-..++.+.-.... . ....++..++.. ..........++.+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~-~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTS-LPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCS-SCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCC-ccccccCCHHHHHHHHHHHh
Confidence 368999999999999999887763 33332234444333221 1 111222222211 11111123345555555544
Q ss_pred ccCcE-EEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEecchh
Q 038220 269 QERRF-IIVLDDIWEK--EAWDDLKAVFPDAKNGSRIIFTTRFKD 310 (866)
Q Consensus 269 ~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 310 (866)
.+.++ +||+|.+... +..+.+.. +.+ .|-.||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 44444 9999998743 33333332 222 2677888888443
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.20 E-value=0.0073 Score=62.84 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=37.0
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHG------------GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|.++.++.+...+... ......+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999888877540 112356889999999999999999873
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.20 E-value=0.036 Score=58.32 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=51.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCc---cccCCHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKAD---LDKMHMEDMKEELSN 266 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~ 266 (866)
+++.|.|.+|+||||||.++... ....-..++|++....++... ++.+... ... ....+.+++.+.++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~-~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVD-IDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCC-GGGCEEECCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCC-hhheeeeCCCCHHHHHHHHHH
Confidence 58999999999999999988863 222223589999887776431 3333321 100 011234555555554
Q ss_pred Hhc-cCcEEEEEecCC
Q 038220 267 FLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 267 ~L~-~k~~LlVlDdv~ 281 (866)
... .+.-+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 433 445689999874
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.19 E-value=0.046 Score=57.67 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=53.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDMKEELSNF 267 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 267 (866)
+++.|.|.+|+||||||..+... ....-..++|++....++.. .++.+...... -....+.+++...+...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 48889999999999999888763 22222468999988776643 13333221000 01122456666666665
Q ss_pred hc-cCcEEEEEecCC
Q 038220 268 LQ-ERRFIIVLDDIW 281 (866)
Q Consensus 268 L~-~k~~LlVlDdv~ 281 (866)
.+ ...-+||+|.+.
T Consensus 148 ~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HTTTCCSEEEEECTT
T ss_pred HhcCCCCEEEEeChH
Confidence 54 345689999874
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.05 E-value=0.047 Score=57.37 Aligned_cols=85 Identities=21% Similarity=0.099 Sum_probs=52.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDMKEELSNF 267 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 267 (866)
+++.|+|.+|+||||||.++... ....=..++|++....++.. .++.++..... -....+.++....+...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 58999999999999999998863 22222458899888776643 23333321000 01122455555555555
Q ss_pred hc-cCcEEEEEecCC
Q 038220 268 LQ-ERRFIIVLDDIW 281 (866)
Q Consensus 268 L~-~k~~LlVlDdv~ 281 (866)
.. .+.-+||+|.+.
T Consensus 135 ~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 135 VRSGALDIIVIDSVA 149 (349)
T ss_dssp HTTTCCSEEEEECGG
T ss_pred HhcCCCCEEEEcChH
Confidence 43 346799999874
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.03 E-value=0.072 Score=54.12 Aligned_cols=85 Identities=8% Similarity=0.119 Sum_probs=52.5
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCC--CCceEEEEeCCCCCHHHHHHHHHHHHhcCCCC--ccccCCHHHH-HHHHH
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKH--FDCCAWAYVSQEYRKWEILQDLCKKVLGLGKA--DLDKMHMEDM-KEELS 265 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~-~~~l~ 265 (866)
++.|.|++|+||||||.+++.. .... =..++|++....++.. .++.++...+. -....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999888763 2222 2458999888887753 24555442110 0112244554 33332
Q ss_pred HH--h-ccCcEEEEEecCCC
Q 038220 266 NF--L-QERRFIIVLDDIWE 282 (866)
Q Consensus 266 ~~--L-~~k~~LlVlDdv~~ 282 (866)
.. + .++.-+||+|-+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 35678999999854
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.00 E-value=0.078 Score=54.26 Aligned_cols=90 Identities=21% Similarity=0.128 Sum_probs=46.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNF 267 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (866)
..++.++|.+|+||||++..+... ....-..+.++.....-. ..+.+....+.....-.+.....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 579999999999999999988863 222222355665543222 22223333333222100000112344444333344
Q ss_pred hccCc-EEEEEecC
Q 038220 268 LQERR-FIIVLDDI 280 (866)
Q Consensus 268 L~~k~-~LlVlDdv 280 (866)
++.+. =++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43233 37888875
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.92 E-value=0.014 Score=61.35 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=36.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|+++.++.+...+..+. -+.++|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 368899999988888887654 688999999999999999987
No 265
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.92 E-value=0.015 Score=55.09 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=32.5
Q ss_pred cccCCCeeEEEEecCC-ccc-----cCcccccCCCCceEEEeeCCCCc-----cccccccCCCCccEEecCCCcc
Q 038220 561 ILEEYKLLQVLDLEGV-YMA-----LIDSSIGNLIHLRYLDLRKTWLK-----MLPSSMGNLFNLQSLDLSSTLV 624 (866)
Q Consensus 561 ~~~~~~~Lr~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~ 624 (866)
.+.+-+.|+.|+|+++ .+. .+...+..-..|+.|+|++|.|. .+...+..-..|++|+|++|.+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3344455666666653 432 23333444455666666666554 2333444445555555555544
No 266
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.92 E-value=0.14 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4899999999999999999986
No 267
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.86 E-value=0.18 Score=50.45 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+++|+|+.|+|||||.+.++.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999986
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.86 E-value=0.094 Score=53.81 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=47.4
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHH--HHHHHHHHHHhcCCCCccccCCHHHH-HHHH
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKW--EILQDLCKKVLGLGKADLDKMHMEDM-KEEL 264 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~l 264 (866)
...++.|+|.+|+||||++..++.. ....-..+.++.... +... +-+....+......-+.....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 3579999999999999999998863 222212355554432 2221 12223333332210001111222222 3344
Q ss_pred HHHhccCcEEEEEecCCC
Q 038220 265 SNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 265 ~~~L~~k~~LlVlDdv~~ 282 (866)
...+..+.-++|+|-.-.
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 444545555888897643
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.79 E-value=0.019 Score=63.27 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|+++.++.+...+..+. -|.|+|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 357899999888888877765 6889999999999999999983
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.79 E-value=0.1 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.|+|.+|+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 271
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.77 E-value=0.031 Score=52.87 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=44.8
Q ss_pred ccCCCCceEEEeeCC-CCc-----cccccccCCCCccEEecCCCccc-----cccccccccccccEEeccCcccc
Q 038220 585 IGNLIHLRYLDLRKT-WLK-----MLPSSMGNLFNLQSLDLSSTLVD-----PIPLVIWKMQQLKHVYFSEFREM 648 (866)
Q Consensus 585 i~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~~~ 648 (866)
+.+-+.|++|+|+++ .|. .+.+.+..-..|+.|+|++|.++ .+...+..-..|++|+|+.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445567888999875 665 35566667778888888888655 34445566677888888877653
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.76 E-value=0.11 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.026 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 186 GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 186 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998876
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.75 E-value=0.077 Score=55.10 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=37.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
.++.|.|.+|+||||||..++.+... .=..++|++. +.+..++...++.....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhC
Confidence 48999999999999999998874222 2234666654 45677888887766544
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.56 E-value=0.015 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.56 E-value=0.018 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999873
No 277
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.55 E-value=0.02 Score=60.95 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=35.7
Q ss_pred CeeechhhHHHHHHHHh-------------cCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 167 DIVGLGEDMMILGNRVI-------------HGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 167 ~~vGr~~~~~~l~~~l~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47898888888887773 11113457899999999999999999983
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.53 E-value=0.017 Score=54.12 Aligned_cols=20 Identities=50% Similarity=0.733 Sum_probs=18.7
Q ss_pred EEEEEEccCCChHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKM 209 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v 209 (866)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 279
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.40 E-value=0.56 Score=51.30 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
.++.|.|.+|+||||||..++.+.... .-..++|++... +..++...++..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~ 254 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCA 254 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHH
Confidence 489999999999999999988742221 112477776543 456666666543
No 280
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.39 E-value=0.015 Score=60.54 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCCC
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQEY 231 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~ 231 (866)
++++.+..-.. -..++|+|.+|+|||||++.+.+.. .+++-+. ++++-+.+..
T Consensus 163 raID~~~pi~r-GQr~~IvG~sG~GKTtLl~~Iar~i-~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGR-GQRGLIVAPPKAGKTMLLQNIAQSI-AYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBT-TCEEEEECCSSSSHHHHHHHHHHHH-HHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeecC-CcEEEEecCCCCChhHHHHHHHHHH-hhcCCCeeEEEEEecCCh
Confidence 45555544221 2488999999999999999988631 1122232 4567777654
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.39 E-value=0.019 Score=54.01 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.32 E-value=0.021 Score=53.73 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.30 E-value=0.018 Score=54.30 Aligned_cols=22 Identities=14% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.019 Score=55.18 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 285
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.09 E-value=0.026 Score=56.61 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCCeeechhhHHHHHHHHhc--C-------C-CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIH--G-------G-LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-.+++|.++.+.++.+.... . + .-.+-+.|+|++|+||||||+.+++.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35788887766655443321 1 0 00122899999999999999999983
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.05 E-value=0.027 Score=54.12 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|+|++|+||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.05 E-value=0.18 Score=52.25 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+++|+|+.|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.04 E-value=0.02 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 289
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.04 E-value=0.23 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999985
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.04 E-value=0.027 Score=52.60 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=19.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|++|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5899999999999999997553
No 291
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.03 E-value=0.14 Score=55.30 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHHHHhc--------C-
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCKKVLG--------L- 247 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~- 247 (866)
.++.|..-. +-..++|.|..|+|||+|++++.++ ..+.+-+.++++-+.+... ..++..++...-.. .
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 345554421 1247899999999999999999874 1234457788988888754 34455555432111 0
Q ss_pred -------CCCccccCCHHHHHHHHHHHhc---cCcEEEEEecCC
Q 038220 248 -------GKADLDKMHMEDMKEELSNFLQ---ERRFIIVLDDIW 281 (866)
Q Consensus 248 -------~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~ 281 (866)
..+...........-.+.+++. ++.+|+++||+.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0000111111222334556664 579999999984
No 292
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.99 E-value=0.1 Score=56.11 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC-HHHHHHHHHH
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR-KWEILQDLCK 242 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~ 242 (866)
+.++.+..-. .-..++|.|..|+|||+|++++.++. .+.+-+.++++-+.+... ..++.+++..
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 3455554421 12478999999999999999998741 233446678888887643 3445555544
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.94 E-value=0.14 Score=53.86 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=51.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCC----CceEEEEeCCCCCHHHHHHHHHHHHhcCC-----C----CccccC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHF----DCCAWAYVSQEYRKWEILQDLCKKVLGLG-----K----ADLDKM 255 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-----~----~~~~~~ 255 (866)
-.++.|+|.+|+|||||+..++......... ..++|++....+....+ ..+++...... . ......
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 4799999999999999999998732111111 23588887665543332 23333222110 0 000001
Q ss_pred CHHHHHHHHHHHhc------cCcEEEEEecCCC
Q 038220 256 HMEDMKEELSNFLQ------ERRFIIVLDDIWE 282 (866)
Q Consensus 256 ~~~~~~~~l~~~L~------~k~~LlVlDdv~~ 282 (866)
...++...+...+. .+.-+||+|.+-.
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233444555554 3677899998754
No 294
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.93 E-value=0.07 Score=57.58 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=28.9
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEY 231 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 231 (866)
.++|+|.+|+|||||++.+..+... .+-+.++++.+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCc
Confidence 5889999999999999998874221 222456677777654
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.87 E-value=0.034 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++.|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 296
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.86 E-value=0.13 Score=54.81 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=35.5
Q ss_pred EEEEEEccCCChHHHHHHHHhcCcccc----CCCCceEEEEeCCCCCHHHHHHHHHHHHh
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVK----KHFDCCAWAYVSQEYRKWEILQDLCKKVL 245 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~ 245 (866)
.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ ..+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 599999999999999999765211111 12345889887776665443 33444443
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.84 E-value=0.025 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999986
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.77 E-value=0.031 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 299
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.76 E-value=0.27 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 3899999999999999999986
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.75 E-value=0.041 Score=54.74 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=26.9
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+.++.............|.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444443333223457899999999999999999986
No 301
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.75 E-value=0.3 Score=48.07 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=23.6
Q ss_pred hHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHh
Q 038220 174 DMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMY 210 (866)
Q Consensus 174 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 210 (866)
..++++..+..+. .+.|+|..|+||||+...+.
T Consensus 65 ~q~~~i~~i~~g~----~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 65 FESEILEAISQNS----VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GHHHHHHHHHHCS----EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----EEEEEeCCCCCcHHhHHHHH
Confidence 3445555555554 88999999999998665554
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.74 E-value=0.19 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988886
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.73 E-value=0.031 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 304
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.71 E-value=0.033 Score=52.27 Aligned_cols=22 Identities=50% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.71 E-value=0.035 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 306
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.69 E-value=0.051 Score=56.35 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=30.5
Q ss_pred eechhhHHHHHHHHhc--CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 169 VGLGEDMMILGNRVIH--GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
|+.+.-.+++++.+.. ..+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3344555666666543 123456799999999999999998876
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.69 E-value=0.3 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999986
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.66 E-value=0.035 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.65 E-value=0.024 Score=53.41 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=19.7
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.64 E-value=0.031 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 311
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.63 E-value=0.057 Score=56.81 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=61.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.+++|+|+.|+||||+.+.+... +.......+ +.+....... .......-...............+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~------~~~~~~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV------HESKKCLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC------CCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh------hhccccceeeeeeccccCCHHHHHHHHhh
Confidence 49999999999999999988762 211111222 2222211000 00000000000000011233447888888
Q ss_pred cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhhh
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDVA 312 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 312 (866)
..+=+|++|...+.+.++.+.... ..|..+++|+-....+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 899999999998877776655442 2355688888755544
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.59 E-value=0.026 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 313
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.59 E-value=0.035 Score=56.61 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCCCCeeechhhHHHHHHHHhc--C-------C-CceEEEEEEccCCChHHHHHHHHhcC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIH--G-------G-LRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..-.+++|.++.++++.+.... . + .-.+-+.|+|++|+||||||+.++..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3446789988776665544321 1 0 00122899999999999999999983
No 314
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.58 E-value=0.037 Score=53.67 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|+.|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.55 E-value=0.028 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|+.|+||||+|+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.51 E-value=0.032 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.51 E-value=0.036 Score=55.51 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999986
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.47 E-value=0.061 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 319
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.46 E-value=0.13 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|.+|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999998876
No 320
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.45 E-value=0.18 Score=54.24 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988875
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.43 E-value=0.056 Score=52.09 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+++-+..++ +++|+|+.|+|||||++.+..
T Consensus 15 ~l~~i~~Ge----~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 15 YVDAIDTNT----IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHHHHHHCS----EEEEECCTTSSTTHHHHHHHH
T ss_pred HHHhccCCC----EEEEECCCCCCHHHHHHHHhc
Confidence 334444454 899999999999999999986
No 322
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.43 E-value=0.32 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 3899999999999999999985
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.42 E-value=0.033 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 324
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.40 E-value=0.046 Score=58.50 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCeeechhhHHHHHHHHhc----------------------------CCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIH----------------------------GGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.++.++.+...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578888888877766620 011234688999999999999999997
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.38 E-value=0.044 Score=52.95 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|+|++|+||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.36 E-value=0.057 Score=55.70 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=29.3
Q ss_pred eechhhHHHHHHHHhcC--CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 169 VGLGEDMMILGNRVIHG--GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 169 vGr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|-...+..+...+... .....+++|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333444444333332 34567999999999999999999876
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.35 E-value=0.037 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.32 E-value=0.03 Score=53.69 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999976
No 329
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.30 E-value=0.29 Score=50.88 Aligned_cols=104 Identities=17% Similarity=0.061 Sum_probs=56.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ 269 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 269 (866)
.+++|+|..|+|||||++.+..- +. .-.+.+.+.-........ . .. .-.............+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~--------~-~~-~i~~~~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH--------H-KN-YTQLFFGGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS--------C-SS-EEEEECBTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc--------c-hh-EEEEEeCCChhHHHHHHHHhh
Confidence 38999999999999999999873 22 123455554222111000 0 00 000000011233445666777
Q ss_pred cCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecch
Q 038220 270 ERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFK 309 (866)
Q Consensus 270 ~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 309 (866)
.++=++++|+..+.+.++.+... ..+ +..+|+||...
T Consensus 239 ~~p~ilildE~~~~e~~~~l~~~-~~g--~~tvi~t~H~~ 275 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYNVL-CSG--HKGTLTTLHAG 275 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHHHH-HTT--CCCEEEEEECS
T ss_pred hCCCEEEEcCCChHHHHHHHHHH-hcC--CCEEEEEEccc
Confidence 78889999999876666655443 221 22256666433
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.29 E-value=0.038 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 331
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.29 E-value=0.048 Score=49.93 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999999987
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.044 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 333
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.26 E-value=0.041 Score=58.20 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 165 EEDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 165 ~~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-.+++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886665444433222 224889999999999999999873
No 334
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.24 E-value=0.03 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.22 E-value=0.04 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 336
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.22 E-value=0.29 Score=53.40 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=37.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
.++.|.|.+|+||||||..++.+... ..=..++|++.. .+..++...++.....
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE--~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLE--MPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECC--CCHHHHHHHHHHHHcC
Confidence 48999999999999999998874221 112347776654 4567777777665444
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.20 E-value=0.047 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.18 E-value=0.041 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 339
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.17 E-value=0.086 Score=56.37 Aligned_cols=89 Identities=10% Similarity=0.194 Sum_probs=50.2
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCC----ceEEEEeCCCCC-HHHHHHHHHHHHhcC---------CCCccccCC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFD----CCAWAYVSQEYR-KWEILQDLCKKVLGL---------GKADLDKMH 256 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~v~~~~~-~~~~~~~i~~~~~~~---------~~~~~~~~~ 256 (866)
-++|.|..|+|||+|+.++.++.. .+.+ .++++-+.+..+ ..++.+++...-... ..+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 478999999999999999998532 2223 577777776543 344444443321010 000000000
Q ss_pred HHHHHHHHHHHhc---cCcEEEEEecCC
Q 038220 257 MEDMKEELSNFLQ---ERRFIIVLDDIW 281 (866)
Q Consensus 257 ~~~~~~~l~~~L~---~k~~LlVlDdv~ 281 (866)
.....-.+.+++. ++.+|+++||+.
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111223455554 689999999984
No 340
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.15 E-value=0.031 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.|+|++|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.11 E-value=0.041 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++.|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.10 E-value=0.042 Score=53.95 Aligned_cols=22 Identities=50% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 343
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.10 E-value=0.34 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4899999999999999999986
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.10 E-value=0.047 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.08 E-value=0.046 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.8
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.03 E-value=0.047 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.02 E-value=0.05 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|+.|+||||+|+.+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 348
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.02 E-value=0.047 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999986
No 349
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.98 E-value=0.24 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999887
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.98 E-value=0.043 Score=51.32 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.97 E-value=0.043 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.654 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++++|+|+.|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.95 E-value=0.081 Score=51.79 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+.+.+.+... ....|+|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444444332 3678999999999999999998874
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.94 E-value=0.07 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|.|+|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.92 E-value=0.052 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 355
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.91 E-value=0.054 Score=52.42 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.2
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.|.|++|+||||.|+.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 356
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.91 E-value=0.31 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.6
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.++|.+|+||||++..++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 57999999999999999888775
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.90 E-value=0.049 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.89 E-value=0.049 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.88 E-value=0.053 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|++|+||||+++.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.85 E-value=0.056 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|..|+|||||++.+..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 56999999999999999999986
No 361
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.83 E-value=0.069 Score=55.13 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHhcCCC-ceEEEEEEccCCChHHHHHHHHhcCcccc-CCCCceEEEEe
Q 038220 172 GEDMMILGNRVIHGGL-RRSVISIIGMAGLGKTTLAKKMYQSSDVK-KHFDCCAWAYV 227 (866)
Q Consensus 172 ~~~~~~l~~~l~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~v 227 (866)
....+.+.+++..... ....+.|+|++|+|||+||+.+++. .. ..-..+.++.+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3344455566654321 2467889999999999999999984 22 22223555554
No 362
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.81 E-value=0.078 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3899999999999999999987
No 363
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.76 E-value=0.25 Score=53.72 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=34.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKV 244 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 244 (866)
.++.|.|.+|+||||||..++.+...+ =..++|++.. .+..++...++...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 489999999999999999988742222 1246666544 44556666666544
No 364
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.71 E-value=0.4 Score=53.39 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=37.7
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLG 246 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 246 (866)
.++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++.....
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHNR 296 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHTT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHcC
Confidence 588999999999999999988742221 123577776544 567777777665544
No 365
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.69 E-value=0.14 Score=45.08 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=30.2
Q ss_pred EEEecCCccc--cCcccccCCCCceEEEeeCCCCcccccc-ccCCCCccEEecCCC
Q 038220 570 VLDLEGVYMA--LIDSSIGNLIHLRYLDLRKTWLKMLPSS-MGNLFNLQSLDLSST 622 (866)
Q Consensus 570 ~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 622 (866)
+++.++..+. .+|..+. .+|++|+|++|.|+.+|.. +..+.+|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555666555 5664332 2466667777666666543 455666666666665
No 366
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.63 E-value=0.062 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.62 E-value=0.043 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 368
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.62 E-value=0.18 Score=49.41 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=30.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccc---cC-CCCceEEEEeCCCCCH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDV---KK-HFDCCAWAYVSQEYRK 233 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~ 233 (866)
-.+++|+|++|+|||||++.++..... .. .-..++|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 369999999999999999999762111 11 1234788776554443
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.62 E-value=0.059 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.61 E-value=0.059 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 371
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.59 E-value=0.061 Score=55.51 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=27.4
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
..+||+|.|-|||||||.+..+.. .....=..+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 468999999999999998877664 1222222366666553
No 372
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.56 E-value=0.038 Score=51.33 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.55 E-value=0.088 Score=51.46 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999986
No 374
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.55 E-value=0.05 Score=53.04 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 375
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.54 E-value=0.08 Score=51.62 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 172 GEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 172 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++..+.+.+.+... ..++++|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444444332 3689999999999999999998874
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.53 E-value=0.057 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.51 E-value=0.059 Score=49.90 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 378
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.51 E-value=0.16 Score=44.59 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=43.7
Q ss_pred eEEEeeCCCCc--cccccccCCCCccEEecCCCcccccccc-ccccccccEEeccCccc
Q 038220 592 RYLDLRKTWLK--MLPSSMGNLFNLQSLDLSSTLVDPIPLV-IWKMQQLKHVYFSEFRE 647 (866)
Q Consensus 592 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 647 (866)
..++.+++.++ .+|..+. .+|++|+|++|.+..+|.. +..+++|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 8887653 4799999999999999865 56789999999988753
No 379
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.50 E-value=0.088 Score=53.12 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999986
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.48 E-value=0.066 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 381
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.47 E-value=0.059 Score=51.56 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.45 E-value=0.061 Score=53.76 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999985
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.42 E-value=0.051 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 384
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.42 E-value=0.064 Score=52.18 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.40 E-value=0.061 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999986
No 386
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.32 E-value=0.048 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=16.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.30 E-value=0.1 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 388
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.29 E-value=0.064 Score=51.04 Aligned_cols=21 Identities=52% Similarity=0.838 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 389
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.28 E-value=0.11 Score=54.80 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555544344578999999999999999998875
No 390
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.27 E-value=0.098 Score=52.49 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 391
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.15 E-value=0.062 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998863
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.09 E-value=0.079 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999987
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.05 E-value=0.12 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999985
No 394
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.96 E-value=0.11 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999986
No 395
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.95 E-value=0.099 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999863
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.94 E-value=0.087 Score=60.19 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 166 EDIVGLGEDMMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..++|.+..++.+...+..+. .+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCCC----EEEEEeCCCCCHHHHHHHHhcc
Confidence 578999988888888777664 8899999999999999999873
No 397
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.91 E-value=0.12 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 398
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.91 E-value=0.12 Score=51.41 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999986
No 399
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.89 E-value=0.11 Score=56.08 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCceEEEEEEccCCChHHHHHHHHhc
Q 038220 166 EDIVGLGEDMMILGNRVIHG------------GLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 166 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|.++.++.+...+... +...+-+.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46889888888776666321 11245688999999999999999987
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.88 E-value=0.09 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999874
No 401
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.83 E-value=0.12 Score=51.74 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 402
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.82 E-value=0.08 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|++|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999999998883
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.80 E-value=0.049 Score=52.85 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 404
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.79 E-value=0.77 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.79 E-value=0.08 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 406
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.78 E-value=0.078 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 407
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.75 E-value=0.08 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 408
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.74 E-value=0.15 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.7
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...++.|+|.+|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998886
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.70 E-value=0.71 Score=50.74 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=20.6
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988885
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.69 E-value=0.082 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 411
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.68 E-value=0.09 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.68 E-value=0.13 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 413
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.65 E-value=0.086 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|++|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35999999999999999999885
No 414
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.64 E-value=0.096 Score=53.72 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|+.|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999999886
No 415
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.63 E-value=0.084 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 416
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.61 E-value=0.11 Score=49.27 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 175 MMILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 175 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+..+..++.+- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555432 22346899999999999999888873
No 417
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.60 E-value=0.085 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.52 E-value=0.099 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.8
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 419
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.50 E-value=0.13 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999986
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.50 E-value=0.083 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++.|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 421
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.49 E-value=0.064 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=15.9
Q ss_pred EEEEEEccCCChHHHHHHHHh-c
Q 038220 190 SVISIIGMAGLGKTTLAKKMY-Q 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~-~ 211 (866)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 489999999999999999998 5
No 422
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.48 E-value=0.21 Score=58.11 Aligned_cols=50 Identities=30% Similarity=0.219 Sum_probs=37.3
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCceEEEEEEccCCChHHHHHHHHhcC
Q 038220 163 TSEEDIVGLGEDMMILGNRVIHG-----------GLRRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 163 ~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..-.++.|.++.+++|.+.+.-. -...+-+.++|++|.|||.+|+.+++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 34456788888888877765421 112456789999999999999999984
No 423
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.48 E-value=0.089 Score=51.12 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 424
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.46 E-value=0.091 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 425
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.39 E-value=0.1 Score=53.86 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|+|..|+|||||++.+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999987
No 426
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.34 E-value=0.071 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.34 E-value=0.078 Score=52.65 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 428
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.27 E-value=0.25 Score=50.66 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=32.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFD-CCAWAYVSQEYRKWEILQDLCKK 243 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~ 243 (866)
.+++|+|.+|+|||||++.++.. ....-. .++|+.... +..++...+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 38999999999999999998874 221112 356665433 344444444433
No 429
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.24 E-value=0.17 Score=54.16 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=49.8
Q ss_pred EEEEEccCCChHHHHHHHHhcCcccc--------CCCC-ceEEEEeCCCCC-HHHHHHHHHHH--HhcC--CCCccccCC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVK--------KHFD-CCAWAYVSQEYR-KWEILQDLCKK--VLGL--GKADLDKMH 256 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~~~-~~~~~~~i~~~--~~~~--~~~~~~~~~ 256 (866)
-++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+..+ ..++..++... +... -....+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 57899999999999999998853321 1222 467777776543 33344443321 0000 000001111
Q ss_pred HH-----HHHHHHHHHhc---cCcEEEEEecCC
Q 038220 257 ME-----DMKEELSNFLQ---ERRFIIVLDDIW 281 (866)
Q Consensus 257 ~~-----~~~~~l~~~L~---~k~~LlVlDdv~ 281 (866)
.. ...-.+.+++. ++.+|+++||+.
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 11223455554 689999999984
No 430
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.24 E-value=0.1 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 431
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.24 E-value=0.1 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999997
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.20 E-value=0.15 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999987
No 433
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.11 E-value=0.36 Score=52.27 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=48.7
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCC-HHHHHHHHHHHHhcCCC----CccccCCHHH---
Q 038220 190 SVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDC-CAWAYVSQEYR-KWEILQDLCKKVLGLGK----ADLDKMHMED--- 259 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~~~~~~~~~~--- 259 (866)
..++|.|..|+|||+|| ..+.+.. .-+. ++++-+.+..+ ..++.+++...-..... ...+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 36889999999999995 5777742 3453 57888887643 33444444331110000 0001111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecCC
Q 038220 260 --MKEELSNFL--QERRFIIVLDDIW 281 (866)
Q Consensus 260 --~~~~l~~~L--~~k~~LlVlDdv~ 281 (866)
..-.+.+++ +++.+|+++||+.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 111234444 4789999999984
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.11 E-value=0.1 Score=50.95 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|++|+||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 435
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.06 E-value=0.11 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 436
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.04 E-value=0.57 Score=48.82 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCc-eEEEEeCCC
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDC-CAWAYVSQE 230 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~ 230 (866)
-++++.+..-.. -..++|+|.+|+|||+|++++.+... +++-+. ++++-+.+.
T Consensus 163 iraID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~i~-~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANGIA-ENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHHHH-HHCTTSEEEEEECSCC
T ss_pred chhhhhcccccC-CceEEEecCCCCChhHHHHHHHHHHh-hcCCCeEEEEEEeccC
Confidence 356677665321 23789999999999999999887311 112232 356666654
No 437
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.01 E-value=0.11 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999987
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.93 E-value=0.11 Score=50.04 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.90 E-value=0.11 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999863
No 440
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.88 E-value=0.4 Score=51.79 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=36.3
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCC-HHHHHHHH
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDC-CAWAYVSQEYR-KWEILQDL 240 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i 240 (866)
.++.+..-. .-..++|.|..|+|||+|| ..+.+. .+-+. ++++-+.+..+ ..++.+++
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l 212 (513)
T 3oaa_A 152 AVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKL 212 (513)
T ss_dssp HHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHH
T ss_pred eeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHH
Confidence 445554421 1136789999999999996 567663 23443 67888887654 33444443
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.87 E-value=0.1 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.80 E-value=0.12 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 443
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.77 E-value=0.13 Score=52.98 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999973
No 444
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.76 E-value=0.38 Score=52.03 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHH-HHHhcCccccCCCCc-eEEEEeCCCCC-HHHHHHHHHHHHhcCCC----C
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLA-KKMYQSSDVKKHFDC-CAWAYVSQEYR-KWEILQDLCKKVLGLGK----A 250 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~~~----~ 250 (866)
.++.+..-. .-..++|.|..|+|||+|| ..+.+.. +-+. ++++-+.+..+ ..++.+++...-..... .
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 445554421 1236789999999999995 5777742 3453 57888887643 23334444331111000 0
Q ss_pred ccccCCHHH-----HHHHHHHHh--ccCcEEEEEecCC
Q 038220 251 DLDKMHMED-----MKEELSNFL--QERRFIIVLDDIW 281 (866)
Q Consensus 251 ~~~~~~~~~-----~~~~l~~~L--~~k~~LlVlDdv~ 281 (866)
..+...... ..-.+-+++ +++.+|+++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 001111111 111234444 4789999999984
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.72 E-value=0.12 Score=49.61 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=43.2
Q ss_pred EEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHH----------HhcCCCCccccCCHHHH
Q 038220 191 VISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKK----------VLGLGKADLDKMHMEDM 260 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~ 260 (866)
+|.|.|++|+||+|.|+.+... |. ...++ ..+++++-++. ....+ .-...+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G----~lvpd~iv 64 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERG----ELVPDDLI 64 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHT----CCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcC----CcCCHHHH
Confidence 5789999999999999999873 32 22333 23344432221 11111 11233456
Q ss_pred HHHHHHHhccCcEEEEEecCCC
Q 038220 261 KEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 261 ~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
...+.+.+..... +|||..-.
T Consensus 65 ~~lv~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 65 IALIEEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHHHHHCCSSSC-EEEESCCC
T ss_pred HHHHHHhhccCCc-eEecCCch
Confidence 6677777765544 68898753
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.71 E-value=0.12 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.67 E-value=0.18 Score=53.38 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 176 MILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 176 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+.+.+.-+-+...+++|+|++|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444433322346999999999999999999987
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.66 E-value=0.12 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.65 E-value=0.13 Score=53.90 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|..|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 46999999999999999999886
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.62 E-value=0.12 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 451
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.61 E-value=0.17 Score=54.49 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=54.7
Q ss_pred HHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCC--CCceEEEEeCCCCC-HHHHHHHHHHHHhcC-------
Q 038220 178 LGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKH--FDCCAWAYVSQEYR-KWEILQDLCKKVLGL------- 247 (866)
Q Consensus 178 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~------- 247 (866)
.++.+..-.. -..++|.|.+|+|||+|+.+++++....+. =+.++++-+.+..+ ..++..++...-...
T Consensus 142 ~ID~l~pigr-GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVR-GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBT-TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeecccc-CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 4555544211 136778999999999999999985333111 13577777776543 344455554321110
Q ss_pred --CCCccccCCHHHHHHHHHHHhc---cCcEEEEEecC
Q 038220 248 --GKADLDKMHMEDMKEELSNFLQ---ERRFIIVLDDI 280 (866)
Q Consensus 248 --~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv 280 (866)
..+...........-.+.+++. ++.+|+++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0000000001111223444544 68999999996
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.58 E-value=0.16 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.54 E-value=0.12 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 454
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.52 E-value=0.32 Score=53.04 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCH-HHHHHH
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRK-WEILQD 239 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~ 239 (866)
++++.+..-. .-..++|.|..|+|||+|++++.+. .+-+.++++-+.+..+. .+++.+
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 3455554421 1247899999999999999999873 23357888888887654 334443
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.52 E-value=0.15 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.-.++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.48 E-value=0.14 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
++|.|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.40 E-value=0.14 Score=51.34 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEe-CCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYV-SQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFL 268 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L 268 (866)
.+++|+|+.|+|||||++.+..- ....+.+.+++.- .-.+-... .. .+.....-.... ..+...+...|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~----~~-~~v~q~~~gl~~---~~l~~~la~aL 95 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKH----KK-SIVNQREVGEDT---KSFADALRAAL 95 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCC----SS-SEEEEEEBTTTB---SCHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCC----cc-eeeeHHHhCCCH---HHHHHHHHHHH
Confidence 59999999999999999998862 2221233333221 10000000 00 000000000011 12345566666
Q ss_pred ccCcEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEecchhh
Q 038220 269 QERRFIIVLDDIWEKEAWDDLKAVFPDAKNGSRIIFTTRFKDV 311 (866)
Q Consensus 269 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 311 (866)
..++=++++|..-+.+....+.... ..|.-|++||-...+
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6677789999997655433333222 235667888765443
No 458
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.31 E-value=0.16 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+-|+|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 459
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.19 E-value=0.29 Score=53.06 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEEEccCCChHHHHH-HHHhcCccccCCCC-ceEEEEeCCCCCH-HHHHHHHHHHHhc-C--------CCCccccCCH
Q 038220 190 SVISIIGMAGLGKTTLA-KKMYQSSDVKKHFD-CCAWAYVSQEYRK-WEILQDLCKKVLG-L--------GKADLDKMHM 257 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~~~i~~~~~~-~--------~~~~~~~~~~ 257 (866)
..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+. .++.+++...-.. . ..+.....-.
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46789999999999995 5777742 245 3678888876432 2333333221000 0 1111111111
Q ss_pred H----HHHHHHHHHhccCcEEEEEecCCC
Q 038220 258 E----DMKEELSNFLQERRFIIVLDDIWE 282 (866)
Q Consensus 258 ~----~~~~~l~~~L~~k~~LlVlDdv~~ 282 (866)
. .+.++++. +++.+|+++||+..
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 1 23333443 58999999999843
No 460
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.17 E-value=0.14 Score=51.68 Aligned_cols=21 Identities=38% Similarity=0.827 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.16 E-value=0.14 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 4899999999999999999987
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.14 E-value=0.15 Score=54.64 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346999999999999999999987
No 463
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.08 E-value=0.22 Score=46.70 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.9
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999875
No 464
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.07 E-value=0.13 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.699 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999986
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.06 E-value=0.15 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 466
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.05 E-value=0.16 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..++.+.|.||+||||++..+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHH
Confidence 57899999999999999999985
No 467
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.94 E-value=0.15 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..|.|.|+.|+||||+|+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.89 E-value=0.88 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999886
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.88 E-value=0.16 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++|.|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999999987
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.87 E-value=0.18 Score=47.46 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 471
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.85 E-value=0.24 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...|+|.|+.|+||||+++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 472
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.77 E-value=0.2 Score=49.68 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.2
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQ 229 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 229 (866)
.++.|.|.+|+||||||.+++.. ....-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 48999999999999999887653 212223577776544
No 473
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.74 E-value=0.42 Score=51.83 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHH-HHHhcCccc----cCCCC-ceEEEEeCCCCC-HHHHHHHHHHHHhcCC-
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLA-KKMYQSSDV----KKHFD-CCAWAYVSQEYR-KWEILQDLCKKVLGLG- 248 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~~~- 248 (866)
+.++.+..-. .-..++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+..+ ..++.+++...-....
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 3455555421 1236789999999999995 577764221 12345 378888887654 3334444433110000
Q ss_pred ---CCccccCCHHH-----HHHHHHHHh--ccCcEEEEEecCC
Q 038220 249 ---KADLDKMHMED-----MKEELSNFL--QERRFIIVLDDIW 281 (866)
Q Consensus 249 ---~~~~~~~~~~~-----~~~~l~~~L--~~k~~LlVlDdv~ 281 (866)
....+...... ..-.+-+++ +++.+|+++||+.
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00001111111 111234444 4789999999984
No 474
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.72 E-value=0.13 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
-.+|+|.|..|+||||+++.+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999887
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.72 E-value=0.19 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 476
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.60 E-value=0.18 Score=54.91 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=28.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYR 232 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 232 (866)
..+++|+|.+|+|||||++.+..- .+. ..+.+++.-...+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 579999999999999999999873 222 23445554334343
No 477
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.56 E-value=0.25 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3899999999999999999997
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.54 E-value=0.17 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4999999999999999998885
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.47 E-value=0.22 Score=46.88 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 480
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.45 E-value=0.27 Score=48.75 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCceEEEEEEccCCChHHHHHHHHhc
Q 038220 177 ILGNRVIHGGLRRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 177 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
-+..|+....+....+.++|++|.|||.+|..+++
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 35666665423345799999999999999999987
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.43 E-value=0.16 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.3
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 482
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.43 E-value=0.49 Score=60.34 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=53.7
Q ss_pred eEEEEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC-CCCc-cccCCHHHHHHHHHH
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGL-GKAD-LDKMHMEDMKEELSN 266 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~l~~ 266 (866)
.+.+.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.. ..-. ......++..+.++.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 469999999999999999998873 333334578888887766544 3344311 0000 001123455555555
Q ss_pred Hhc-cCcEEEEEecCC
Q 038220 267 FLQ-ERRFIIVLDDIW 281 (866)
Q Consensus 267 ~L~-~k~~LlVlDdv~ 281 (866)
..+ .+.-+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 443 567899999984
No 483
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.41 E-value=0.18 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999873
No 484
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.37 E-value=0.18 Score=52.34 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.6
Q ss_pred ceEEEEEEccCCChHHHHHHHHhcC
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.+++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3789999999999999999999864
No 485
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.30 E-value=0.68 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||++.+..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4899999999999999998875
No 486
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.13 E-value=0.22 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 487
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.10 E-value=0.17 Score=49.84 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.5
Q ss_pred ceEEEEEEccCCChHHHHHHHHhc
Q 038220 188 RRSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 188 ~~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999886
No 488
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.06 E-value=0.2 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhc
Q 038220 191 VISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~ 211 (866)
+.+|+|..|+|||||+..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999875
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.03 E-value=0.19 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 490
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.99 E-value=2.4 Score=56.12 Aligned_cols=223 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred EEEEccCCChHHHHHHHHhcCccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHhc--
Q 038220 192 ISIIGMAGLGKTTLAKKMYQSSDVKKHFDCCAWAYVSQEYRKWEILQDLCKKVLGLGKADLDKMHMEDMKEELSNFLQ-- 269 (866)
Q Consensus 192 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-- 269 (866)
+.++|++|+|||++|+.+.. ...--..+.++.+...+...+.+.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~----~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~---------------------~~~ 1324 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR----NSSLYDVVGINFSKDTTTEHILSALHRHTNYV---------------------TTS 1324 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH----SCSSCEEEEEECCTTCCHHHHHHHHHHHBCCE---------------------EET
T ss_pred EEEECCCCCCHHHHHHHHHh----cCCCCceEEEEeecCCCHHHHHHHHHHHhhhc---------------------ccc
Q ss_pred ----------cCcEEEEEecCC--------ChhhHHHHHhhCCCCC------------CCcEEEEEecch------hhhh
Q 038220 270 ----------ERRFIIVLDDIW--------EKEAWDDLKAVFPDAK------------NGSRIIFTTRFK------DVAV 313 (866)
Q Consensus 270 ----------~k~~LlVlDdv~--------~~~~~~~l~~~l~~~~------------~gs~iivTtR~~------~v~~ 313 (866)
+++.++.+||+. .....+.++..+..++ .+..+|-++... .+..
T Consensus 1325 ~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1325 KGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE 1404 (2695)
T ss_dssp TTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCH
T ss_pred CCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCCh
Q ss_pred ccCCCCCCeeccCCChHHHHHHHHHHHhCCCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHhhhccCCCCCHHHHHHHH
Q 038220 314 YADPGSPPYELCLLNEEDSCELLFKKAFAGGNAMSSLPPWSRELGKQIVKKCGGLPLAIVVLGGLLSSKEATYSEWLKVL 393 (866)
Q Consensus 314 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~i~~~l~~~~~~~~~w~~~l 393 (866)
........+.+...+.++-..+|.......- ...+++..++..|+... .+-|..+.
T Consensus 1405 rllRrf~vi~i~~P~~~~l~~I~~~il~~~l----~~~~~v~~~~~~lv~at--------------------i~~y~~v~ 1460 (2695)
T 4akg_A 1405 RFTRHAAILYLGYPSGKSLSQIYEIYYKAIF----KLVPEFRSYTEPFARAS--------------------VHLYNECK 1460 (2695)
T ss_dssp HHHTTEEEEECCCCTTTHHHHHHHHHHHHHT----TSSGGGGGGHHHHHHHH--------------------HHHHHHHH
T ss_pred hhhheeeEEEeCCCCHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHH--------------------HHHHHHHH
Q ss_pred HhhhhhccCCChhHHHHHHHhcCCCCCchhhHHhHhccC-CCCcccchHHHHHHHHHcCcccCCCCCCHHHHHHHHHHHH
Q 038220 394 QSVQWQLNLNPAKCMDILKLSYQDLPYYLKPCFLYIGLF-PEDFEIAARKLILLWVAEGFVQPRGIEPLEDVAEDYLEEL 472 (866)
Q Consensus 394 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~a~f-p~~~~i~~~~li~~W~aeg~i~~~~~~~~e~~~~~~l~~L 472 (866)
+.+...... -|--=+.++-+.|..+-.. ++...-....++++|+-|+.=--.+.-..++.-+...+.+
T Consensus 1461 ~~~~~~~k~-----------HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l 1529 (2695)
T 4akg_A 1461 ARYSTGLQS-----------HYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLL 1529 (2695)
T ss_dssp HHSCTTTCT-----------TCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHcCCccCC-----------CcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred hh
Q 038220 473 VG 474 (866)
Q Consensus 473 ~~ 474 (866)
.+
T Consensus 1530 ~~ 1531 (2695)
T 4akg_A 1530 YE 1531 (2695)
T ss_dssp HH
T ss_pred HH
No 491
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.89 E-value=0.32 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.1
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+++|+|.+|+|||||.+.+..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999974
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.88 E-value=0.11 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=18.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.84 E-value=0.22 Score=46.12 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999999875
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.72 E-value=0.3 Score=45.35 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred eEEEEEEccCCChHHHHHHHHhcC
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
...|+|+|.+|+|||||...+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999874
No 495
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.67 E-value=0.22 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 496
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.60 E-value=0.28 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHhc
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 3899999999999999999997
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.51 E-value=2 Score=51.00 Aligned_cols=120 Identities=18% Similarity=0.102 Sum_probs=60.3
Q ss_pred EEEEEEccCCChHHHHHHHHhcCccccCCCC---ceEEEEeCCCC-------CHH-----------HHHHHHHHHHhcC-
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQSSDVKKHFD---CCAWAYVSQEY-------RKW-----------EILQDLCKKVLGL- 247 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~~-------~~~-----------~~~~~i~~~~~~~- 247 (866)
.+++|+|..|+|||||.+.+..- .+. .++ ..-.+.+.+.. +.. +-..++++.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 48999999999999999999841 111 010 00012223221 111 1223334443321
Q ss_pred --CCCccccCCHHHHH-HHHHHHhccCcEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEecchhhhh
Q 038220 248 --GKADLDKMHMEDMK-EELSNFLQERRFIIVLDDIWEK---EAWDDLKAVFPDAKNGSRIIFTTRFKDVAV 313 (866)
Q Consensus 248 --~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 313 (866)
........+..+.+ -.|...+..++-+++||.--+. ..-..+...+.. .|..||++|.+.....
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~ 609 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHH
Confidence 00111223333333 3456666678889999986542 222233333322 3566777777665443
No 498
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.43 E-value=0.23 Score=53.71 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=20.9
Q ss_pred eEEEEEEccCCChHHHHHHHHhc
Q 038220 189 RSVISIIGMAGLGKTTLAKKMYQ 211 (866)
Q Consensus 189 ~~vi~I~G~gGiGKTtLa~~v~~ 211 (866)
..+|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988876
No 499
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.42 E-value=0.23 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhcC
Q 038220 191 VISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 191 vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.39 E-value=0.22 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHhcC
Q 038220 190 SVISIIGMAGLGKTTLAKKMYQS 212 (866)
Q Consensus 190 ~vi~I~G~gGiGKTtLa~~v~~~ 212 (866)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
Done!