BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038221
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
          With Fgf1
          Length = 334

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 21 SHEESGEWSCKSDYEIRVLAEF 42
          SHE+SG +SC+     RVL  F
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHF 90


>pdb|2EPL|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPM|X Chain X, N-Acetyl-B-D-Glucoasminidase (Gcna) From Stretococcus
           Gordonii
 pdb|2EPN|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPN|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPO|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPO|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
          Length = 627

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 56  WEDIDG--SEFSLLPALDPHAEHEYKGRKMNVKECF 89
           W D  G  S+FS+LPAL   AE  Y+     V E F
Sbjct: 374 WGDNGGETSQFSVLPALQIWAELAYRNDLKKVSEHF 409


>pdb|2EPK|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
          Length = 627

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 56  WEDIDG--SEFSLLPALDPHAEHEYKGRKMNVKECF 89
           W D  G  S+FS+LPAL   AE  Y+     V E F
Sbjct: 374 WGDNGGETSQFSVLPALQIWAELAYRNDLKKVSEHF 409


>pdb|3KFF|A Chain A, Major Mouse Urinary Protein Iv Complexed With
           2-Sec-Butyl-4,5- Dihydrothiazole
 pdb|3KFG|A Chain A, Major Mouse Urinary Protein Iv Complexed With 2-Heptanone
 pdb|3KFH|A Chain A, Major Mouse Urinary Protein Iv Complexed With
           2-Ethylhexanol
 pdb|3KFI|A Chain A, Major Mouse Urinary Protein Iv Complexed With
           2,5-Dimethylpyrazine
          Length = 162

 Score = 25.4 bits (54), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 25/61 (40%)

Query: 48  TLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGRKMNVKECFSALHDGHDVYFLLQVDGE 107
           T  G   + E I+G  FS+L A D   + E  G      E    L +     F   +DGE
Sbjct: 4   TSKGQNLNVEKINGEWFSILLASDKREKIEEHGSMRVFVEHIHVLENSLAFKFHTVIDGE 63

Query: 108 C 108
           C
Sbjct: 64  C 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,798
Number of Sequences: 62578
Number of extensions: 141575
Number of successful extensions: 239
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 5
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)