BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038221
         (113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74031|FWDC_METWO Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C
           OS=Methanobacterium wolfei GN=fwdC PE=2 SV=1
          Length = 270

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 2   LRLLLLLFVLSTVSIGWVNSHEESGEWSCKSDYEIRVLAEFKPELITLDGHADDW--EDI 59
           +++++   V +T  IG       +GE   + +  + V A  K   IT++G+A  W  +D+
Sbjct: 65  IKIIIDGDVYNTKRIG---QEMTAGEIIVRGNVNMYVGAGMKGGKITVEGNAGSWAGQDM 121

Query: 60  DGSEFSLLPALDPHAEHEYKG 80
            G E  +L   D +    Y+G
Sbjct: 122 RGGEIEILGDADDYVGSSYRG 142


>sp|Q28HN9|CENPL_XENTR Centromere protein L OS=Xenopus tropicalis GN=cenpl PE=2 SV=1
          Length = 348

 Score = 30.4 bits (67), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 57  EDIDGSEFSLLPALDPHAEHEYKGRKMNVKECFSALHDGHDVYFLLQVD--GECVYS 111
           E I  +EF     ++PH +  Y     ++K  +S +H G D     +VD   +C+Y+
Sbjct: 236 EHITATEFIFSVPIEPHMDISYAIHPEDIKALWSNIHKGQDEVLAEEVDLLFQCLYT 292


>sp|Q48BY8|HSLO_PSE14 33 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola (strain
           1448A / Race 6) GN=hslO PE=3 SV=1
          Length = 300

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 30  CKSDYEIRVLAEFKPELITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKG 80
           C S+ E+R +A +   LIT D    D    DG   SL   +DPH    Y+G
Sbjct: 85  CSSERELRGIARYDETLITPDAGLQDLMP-DG---SLALTVDPHKGKRYQG 131


>sp|B5ZYC6|EX7L_RHILW Exodeoxyribonuclease 7 large subunit OS=Rhizobium leguminosarum bv.
           trifolii (strain WSM2304) GN=xseA PE=3 SV=1
          Length = 527

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 28  WSCKSDYEIRVLAEFKPELITLDGHADDWEDID 60
           WS   +  +R  AE +  LI+  GH  DW  ID
Sbjct: 226 WSFNDEIVVRAAAESRIPLISAVGHETDWTLID 258


>sp|Q2KDI7|EX7L_RHIEC Exodeoxyribonuclease 7 large subunit OS=Rhizobium etli (strain CFN
           42 / ATCC 51251) GN=xseA PE=3 SV=1
          Length = 526

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 28  WSCKSDYEIRVLAEFKPELITLDGHADDWEDID 60
           WS   +  +R  AE +  LI+  GH  DW  ID
Sbjct: 226 WSFNDEIVVRAAAESRIPLISAVGHETDWTLID 258


>sp|B3PYF6|EX7L_RHIE6 Exodeoxyribonuclease 7 large subunit OS=Rhizobium etli (strain CIAT
           652) GN=xseA PE=3 SV=1
          Length = 526

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 28  WSCKSDYEIRVLAEFKPELITLDGHADDWEDID 60
           WS   +  +R  AE +  LI+  GH  DW  ID
Sbjct: 226 WSFNDEIVVRAAAESRIPLISAVGHETDWTLID 258


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,314,025
Number of Sequences: 539616
Number of extensions: 1791697
Number of successful extensions: 3757
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3750
Number of HSP's gapped (non-prelim): 11
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)