Query 038221
Match_columns 113
No_of_seqs 18 out of 20
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 15:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivf_C Ethylbenzene dehydrogen 99.1 1.5E-11 5E-16 94.8 3.2 62 46-111 11-82 (214)
2 1i82_A Xylanase A, endo-1,4-be 96.8 0.0016 5.6E-08 45.5 5.0 60 39-107 2-62 (189)
3 4e0e_A Putative uncharacterize 30.7 34 0.0012 25.9 2.8 59 36-110 96-160 (178)
4 3c0f_B Uncharacterized protein 28.6 44 0.0015 23.3 2.9 26 79-110 66-91 (91)
5 3j21_V 50S ribosomal protein L 25.9 29 0.001 22.4 1.5 20 76-101 13-33 (66)
6 3nlc_A Uncharacterized protein 25.4 18 0.00063 30.0 0.6 48 27-74 341-388 (549)
7 2wkn_A Formamidase, gamma-lact 23.3 30 0.001 28.8 1.5 28 79-110 220-247 (409)
8 2eke_C Ubiquitin-like protein 21.8 1.6E+02 0.0055 19.7 4.7 35 65-103 14-48 (106)
9 3eaa_A EVPC; T6SS, unknown fun 21.1 1.2E+02 0.0042 21.2 4.1 43 43-86 12-55 (163)
10 1y12_A Hypothetical protein PA 19.9 1E+02 0.0034 21.7 3.4 43 43-86 15-57 (165)
No 1
>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.14 E-value=1.5e-11 Score=94.76 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=57.7
Q ss_pred eeeecCCCCCcccccCcceecccc-----CCCCC-----CCcCCCceeEEeecccceeccccEEEEEEecCceeec
Q 038221 46 LITLDGHADDWEDIDGSEFSLLPA-----LDPHA-----EHEYKGRKMNVKECFSALHDGHDVYFLLQVDGECVYS 111 (113)
Q Consensus 46 ~iTlDG~~~DW~~i~g~efsL~pA-----LdPd~-----~~~Y~gGkm~VK~~~~a~HDG~difFlLqVdG~Y~y~ 111 (113)
.|++|+++..|+++++.+++|.|+ +||++ ..++...+|+|| |+|||++|||+|+.+.+++++
T Consensus 11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~Vk----Aa~dg~~i~f~l~W~D~t~~~ 82 (214)
T 2ivf_C 11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVA----ALHNGSMIALRLKWASEKHDK 82 (214)
T ss_dssp HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEE----EEECSSEEEEEEEEECCCCCS
T ss_pred cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEE----EEECCCeEEEEEEECCCCCCc
Confidence 568899999999999999999999 88887 788999999999 999999999999999998864
No 2
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A
Probab=96.83 E-value=0.0016 Score=45.52 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=42.1
Q ss_pred EEEeecceeeecCCCCC-cccccCcceeccccCCCCCCCcCCCceeEEeecccceeccccEEEEEEecCc
Q 038221 39 LAEFKPELITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGRKMNVKECFSALHDGHDVYFLLQVDGE 107 (113)
Q Consensus 39 ~Aef~PG~iTlDG~~~D-W~~i~g~efsL~pALdPd~~~~Y~gGkm~VK~~~~a~HDG~difFlLqVdG~ 107 (113)
.|....|.|+|||..+| |+..+-..-... . .+...+.=+-+|| ++||+..+|++.+|--+
T Consensus 2 ~a~~~~~~~~IDG~ld~~W~~a~~~~~~~~--~---~g~~~~~~~t~~~----~~~d~~~LYv~~~v~D~ 62 (189)
T 1i82_A 2 VATAKYGTPVIDGEIDEIWNTTEEIETKAV--A---MGSLDKNATAKVR----VLWDENYLYVLAIVKDP 62 (189)
T ss_dssp EEEEEECCCCSSSSCCGGGGGSCEEECCEE--E---ESCTTTSCEEEEE----EEECSSEEEEEEEEECS
T ss_pred eeeeccCCceECCccchhhccCccEeeeee--e---cCCcCCCCcEEEE----EEEcCCceEEEEEEECC
Confidence 35667889999999998 998775321111 1 1222234477888 99999999999999653
No 3
>4e0e_A Putative uncharacterized protein; DUF4450 family, structural genomics, joint center for struct genomics, JCSG; 2.90A {Bacteroides thetaiotaomicron}
Probab=30.70 E-value=34 Score=25.85 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred eEEEEEeecceeee-cCCCCC--cccccCcceeccccCCCCCCCcCCCceeEEeecccceeccccEEEEEEec---Ccee
Q 038221 36 IRVLAEFKPELITL-DGHADD--WEDIDGSEFSLLPALDPHAEHEYKGRKMNVKECFSALHDGHDVYFLLQVD---GECV 109 (113)
Q Consensus 36 ~~v~Aef~PG~iTl-DG~~~D--W~~i~g~efsL~pALdPd~~~~Y~gGkm~VK~~~~a~HDG~difFlLqVd---G~Y~ 109 (113)
.++++-|.|+.|.| |||..+ |.=.+..--.=.|+|- |+..++ .++.+||.+|-+ .+|.
T Consensus 96 ~~l~~~~P~~~irL~Da~~~~~pl~L~~S~k~t~~Pvl~---------g~~~l~-------~~~~~Y~~i~~~~~~a~~~ 159 (178)
T 4e0e_A 96 RTLQAVTPTDDIRLSNGRQDKTPLLLYESGKRTDRPVLA---------GRCPLA-------ANSKLYFCFYEQNARADYN 159 (178)
T ss_dssp EEEEEECSCSCEEEECGGGCSSHHHHHTCCCCCSSCEEE---------EEEECC-------TTEEEEEEEEECCCCCSCC
T ss_pred eEEEeecCccceeccchhhhcChHHHHhccccccCceEE---------EEeecC-------CCCcEEEEEEccccccccc
Confidence 57788899998876 555443 1111121122347776 888777 778999999973 3555
Q ss_pred e
Q 038221 110 Y 110 (113)
Q Consensus 110 y 110 (113)
|
T Consensus 160 y 160 (178)
T 4e0e_A 160 Y 160 (178)
T ss_dssp T
T ss_pred c
Confidence 5
No 4
>3c0f_B Uncharacterized protein AF_1514; hot DOG fold, sulphur SAD, methylated, unknown function; HET: MLY; 1.80A {Archaeoglobus fulgidus dsm 4304}
Probab=28.62 E-value=44 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.708 Sum_probs=17.8
Q ss_pred CCceeEEeecccceeccccEEEEEEecCceee
Q 038221 79 KGRKMNVKECFSALHDGHDVYFLLQVDGECVY 110 (113)
Q Consensus 79 ~gGkm~VK~~~~a~HDG~difFlLqVdG~Y~y 110 (113)
.||+++|+ -+--+.+|+.||.|.-+|
T Consensus 66 RGanL~Id------iN~~~y~F~~~~~~~~~~ 91 (91)
T 3c0f_B 66 RGANLXIS------VNQFEFYFRIEVEGQAKY 91 (91)
T ss_dssp TTCCEEEE------ETTEEEEEEEECCC----
T ss_pred cCccEEEE------EcCceEEEEEEeeccccC
Confidence 47799988 345678999999997665
No 5
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.92 E-value=29 Score=22.45 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=15.2
Q ss_pred CcCCC-ceeEEeecccceeccccEEEE
Q 038221 76 HEYKG-RKMNVKECFSALHDGHDVYFL 101 (113)
Q Consensus 76 ~~Y~g-Gkm~VK~~~~a~HDG~difFl 101 (113)
+-||| |+|-|+ -||+-.+|+
T Consensus 13 ~IyPG~G~~~Vr------~Dgkvf~Fc 33 (66)
T 3j21_V 13 PFEPGTGKMYVR------NDGRVLFFC 33 (66)
T ss_dssp BCCTTCCEEEEC------SSSCEEEES
T ss_pred cccCCCCeEEEe------cCCcEEEEE
Confidence 34665 999999 699887774
No 6
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=25.43 E-value=18 Score=30.00 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=37.5
Q ss_pred ceeecCCCceEEEEEeecceeeecCCCCCcccccCcceeccccCCCCC
Q 038221 27 EWSCKSDYEIRVLAEFKPELITLDGHADDWEDIDGSEFSLLPALDPHA 74 (113)
Q Consensus 27 e~sC~~~~e~~v~Aef~PG~iTlDG~~~DW~~i~g~efsL~pALdPd~ 74 (113)
-..|+.++...|.+.+-+|.++++||+--=.+=+-..|+|+=..+|.+
T Consensus 341 ~tFcm~pgG~vv~~~~~~~~~~~nG~s~~~r~~~~~n~a~~v~~~~~~ 388 (549)
T 3nlc_A 341 YSFCMCPGGTVVAATSEEGRVVTNGMSQYSRAERNANSAIVVGISPEV 388 (549)
T ss_dssp EEEEEEEEEEEEECCCSTTCCCEEEECCTTCCSSEEEEEEEEEECBTT
T ss_pred EEEeeCCCCcEEEEEecCCeeEECCCCcccCCCCCcceEEEEEeecCC
Confidence 347888887777888899999999998775555556788888877763
No 7
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=23.32 E-value=30 Score=28.76 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=24.6
Q ss_pred CCceeEEeecccceeccccEEEEEEecCceee
Q 038221 79 KGRKMNVKECFSALHDGHDVYFLLQVDGECVY 110 (113)
Q Consensus 79 ~gGkm~VK~~~~a~HDG~difFlLqVdG~Y~y 110 (113)
-||+|-+| -+--|-.+||=.+|+|..-|
T Consensus 220 hGGNmDik----~l~~GstlYLPV~V~GAlfs 247 (409)
T 2wkn_A 220 HGGNCDIK----DLSRGSRVFFPVYVDGAGLS 247 (409)
T ss_dssp TEESCCCT----TSCTTCEEEEECCSTTEEEE
T ss_pred ccccccch----hccCCcEEEEEEEecCceEe
Confidence 38999999 88899999999999997643
No 8
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=21.79 E-value=1.6e+02 Score=19.71 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=22.5
Q ss_pred eccccCCCCCCCcCCCceeEEeecccceeccccEEEEEE
Q 038221 65 SLLPALDPHAEHEYKGRKMNVKECFSALHDGHDVYFLLQ 103 (113)
Q Consensus 65 sL~pALdPd~~~~Y~gGkm~VK~~~~a~HDG~difFlLq 103 (113)
+|.|-=+...+.+=++-+|+|| +.-||+.|+|-++
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~Ik----V~~~g~~i~fkIk 48 (106)
T 2eke_C 14 PLVPRGSEVKPEVKPETHINLK----VSDGSSEIFFKIK 48 (106)
T ss_dssp CCCCCCCCCCCCCCCCSEEEEE----EECSSCEEEEEEE
T ss_pred CCcCCCcccCCCCCCCCeEEEE----EecCCcEEEEEeC
Confidence 4555444333334456789999 5448999998765
No 9
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=21.07 E-value=1.2e+02 Score=21.18 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=33.8
Q ss_pred ecceeeecCCCCCcccccCcceeccccCCCCCCC-cCCCceeEEe
Q 038221 43 KPELITLDGHADDWEDIDGSEFSLLPALDPHAEH-EYKGRKMNVK 86 (113)
Q Consensus 43 ~PG~iTlDG~~~DW~~i~g~efsL~pALdPd~~~-~Y~gGkm~VK 86 (113)
.+|+.+..|| .||=.|.+.++.+-=..|++... .=+.|+..++
T Consensus 12 I~Ges~~~~h-~~~I~V~s~s~~v~~~~~~~sg~gg~~~g~~~~~ 55 (163)
T 3eaa_A 12 VDGESTDDKH-KKWIEVLGFAWGAGNECTMESGTQGLNTGKAMMS 55 (163)
T ss_dssp CCCCCCSGGG-TTCEEESCCCCCEEECCCCCSSCSSCCCCCEEEC
T ss_pred ccccccccCC-CCcEEEEEeEEeEEccccccCCCcccccCCeEEe
Confidence 6799999999 59999999999887778887753 2356776665
No 10
>1y12_A Hypothetical protein PA0085; hemolysin-corregulation, structural PSI, protein structure initiative, midwest center for struc genomics; 1.95A {Pseudomonas aeruginosa PAO1} SCOP: b.157.1.1
Probab=19.87 E-value=1e+02 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=33.7
Q ss_pred ecceeeecCCCCCcccccCcceeccccCCCCCCCcCCCceeEEe
Q 038221 43 KPELITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGRKMNVK 86 (113)
Q Consensus 43 ~PG~iTlDG~~~DW~~i~g~efsL~pALdPd~~~~Y~gGkm~VK 86 (113)
..|..|..|| .||=.|-+.++.+-=.-|++..+.=+.|+..++
T Consensus 15 I~Ges~~~~h-~~~I~V~s~s~~v~~~~~~~~G~g~~sG~~~~~ 57 (165)
T 1y12_A 15 VKGESKDKTH-AEEIDVLAWSWGMSQSGSMHMGGGGGAGKVNVQ 57 (165)
T ss_dssp CCCCCCCSSS-TTSEEEEEEEEEEEECCCTTSCCCC-CCCEEEC
T ss_pred CcccccccCC-CCeEEEEEEEEEEEeecCCCCCCCCCccCeEEe
Confidence 5688888889 599999999999988888888774446766555
Done!