Query 038222
Match_columns 150
No_of_seqs 138 out of 1142
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 3.5E-24 7.6E-29 160.3 12.2 114 36-149 24-149 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.9 4.7E-21 1E-25 145.4 11.9 113 37-149 33-155 (517)
3 PLN02183 ferulate 5-hydroxylas 99.8 1.3E-19 2.8E-24 137.6 12.0 116 31-146 29-154 (516)
4 PLN03112 cytochrome P450 famil 99.8 2.5E-19 5.4E-24 136.0 12.4 127 22-149 14-153 (514)
5 PLN02394 trans-cinnamate 4-mon 99.8 5.2E-19 1.1E-23 133.9 12.3 115 35-149 27-152 (503)
6 PLN03234 cytochrome P450 83B1; 99.8 7.3E-19 1.6E-23 133.0 12.0 116 34-149 24-150 (499)
7 PLN00110 flavonoid 3',5'-hydro 99.8 1.1E-18 2.5E-23 132.1 12.3 118 32-149 25-152 (504)
8 PLN02971 tryptophan N-hydroxyl 99.8 7.2E-19 1.6E-23 134.3 10.4 113 37-149 56-181 (543)
9 PLN00168 Cytochrome P450; Prov 99.8 1.8E-18 3.9E-23 131.5 12.4 111 37-149 34-159 (519)
10 PTZ00404 cytochrome P450; Prov 99.8 3.7E-18 7.9E-23 128.7 10.5 109 37-149 28-147 (482)
11 PLN02196 abscisic acid 8'-hydr 99.7 1.5E-17 3.1E-22 125.0 9.9 108 37-149 34-153 (463)
12 PLN02966 cytochrome P450 83A1 99.7 1.7E-17 3.7E-22 125.7 10.4 113 36-149 27-151 (502)
13 KOG0158 Cytochrome P450 CYP3/C 99.7 3.5E-17 7.6E-22 122.2 10.6 111 34-149 27-153 (499)
14 PLN02290 cytokinin trans-hydro 99.7 1.2E-17 2.7E-22 126.8 7.8 109 36-149 40-179 (516)
15 PLN02774 brassinosteroid-6-oxi 99.7 1.5E-17 3.2E-22 124.9 7.7 112 34-149 27-149 (463)
16 PLN02500 cytochrome P450 90B1 99.7 2.6E-17 5.7E-22 124.3 8.7 108 37-148 37-160 (490)
17 PLN02655 ent-kaurene oxidase 99.7 2.1E-17 4.5E-22 124.2 8.0 110 40-149 1-121 (466)
18 PLN03018 homomethionine N-hydr 99.7 1.2E-15 2.6E-20 116.4 12.4 109 38-147 40-162 (534)
19 PLN02302 ent-kaurenoic acid ox 99.7 1.4E-15 3E-20 114.9 11.1 108 37-149 41-166 (490)
20 PLN02987 Cytochrome P450, fami 99.6 2.3E-15 4.9E-20 113.4 9.0 102 37-142 29-145 (472)
21 KOG0157 Cytochrome P450 CYP4/C 99.6 2.9E-15 6.3E-20 113.4 8.1 110 36-149 33-156 (497)
22 PLN03195 fatty acid omega-hydr 99.6 5.4E-15 1.2E-19 112.5 8.2 104 38-146 30-147 (516)
23 PLN03141 3-epi-6-deoxocathaste 99.6 4.1E-15 8.9E-20 111.5 6.7 109 35-147 4-128 (452)
24 PLN02169 fatty acid (omega-1)- 99.5 9.9E-14 2.2E-18 105.3 9.8 103 34-140 27-145 (500)
25 PF00067 p450: Cytochrome P450 99.5 7.4E-15 1.6E-19 108.9 2.2 107 40-149 1-122 (463)
26 PLN02936 epsilon-ring hydroxyl 99.4 7.3E-13 1.6E-17 100.3 6.4 107 38-148 12-134 (489)
27 PLN02738 carotene beta-ring hy 99.3 4.3E-12 9.3E-17 98.7 6.6 96 50-149 143-249 (633)
28 PLN02648 allene oxide synthase 99.2 9E-12 2E-16 94.1 3.8 108 38-149 17-152 (480)
29 KOG0159 Cytochrome P450 CYP11/ 99.1 2E-10 4.3E-15 85.7 6.1 108 40-149 52-178 (519)
30 KOG0684 Cytochrome P450 [Secon 99.1 1.2E-09 2.5E-14 80.3 8.7 109 38-149 31-151 (486)
31 PLN02426 cytochrome P450, fami 99.0 3.2E-09 6.9E-14 80.9 9.6 98 46-147 49-158 (502)
32 COG2124 CypX Cytochrome P450 [ 97.9 2.4E-05 5.2E-10 58.5 5.2 66 80-149 57-126 (411)
33 PF02009 Rifin_STEVOR: Rifin/s 59.4 11 0.00024 27.4 2.8 10 25-34 273-282 (299)
34 PTZ00046 rifin; Provisional 52.1 23 0.0005 26.4 3.5 16 21-36 328-343 (358)
35 TIGR01477 RIFIN variant surfac 52.1 23 0.0005 26.4 3.4 16 21-36 323-338 (353)
36 PF15330 SIT: SHP2-interacting 39.2 87 0.0019 19.0 4.1 10 46-55 46-55 (107)
37 PF05821 NDUF_B8: NADH-ubiquin 36.2 1.3E+02 0.0029 20.1 5.4 22 38-59 148-169 (179)
38 COG4736 CcoQ Cbb3-type cytochr 35.5 73 0.0016 17.2 2.9 10 25-34 24-33 (60)
39 PHA03030 hypothetical protein; 29.9 50 0.0011 19.8 1.9 20 13-32 3-22 (122)
40 KOG0114 Predicted RNA-binding 28.4 73 0.0016 19.5 2.4 21 59-79 31-51 (124)
41 PF07912 ERp29_N: ERp29, N-ter 28.2 1.3E+02 0.0027 19.0 3.5 8 60-67 38-45 (126)
42 PF14307 Glyco_tran_WbsX: Glyc 27.1 1.8E+02 0.0038 21.6 4.8 91 46-137 45-152 (345)
43 PHA03049 IMV membrane protein; 27.0 1.2E+02 0.0026 16.7 4.2 7 38-44 31-37 (68)
44 PHA01327 hypothetical protein 26.9 15 0.00033 18.0 -0.5 17 113-129 14-30 (49)
45 PF15206 FAM209: FAM209 family 25.5 50 0.0011 21.1 1.4 13 37-49 65-77 (150)
46 PRK13461 F0F1 ATP synthase sub 23.2 1.7E+02 0.0037 18.8 3.7 7 8-14 2-8 (159)
47 PF09316 Cmyb_C: C-myb, C-term 21.9 1.4E+02 0.003 19.8 3.0 31 60-90 74-109 (167)
48 COG2069 CdhD CO dehydrogenase/ 20.6 1.3E+02 0.0028 22.2 2.8 32 57-88 150-197 (403)
49 PF00076 RRM_1: RNA recognitio 20.3 1.4E+02 0.003 15.3 2.5 19 60-78 12-30 (70)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.5e-24 Score=160.28 Aligned_cols=114 Identities=26% Similarity=0.554 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCccccccccCCCC-cHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCc-ccccc
Q 038222 36 LKQLPPGPRPYPVIGNLLELGDK-PHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTV-PHAMS 103 (150)
Q Consensus 36 ~~~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~-~~~~~ 103 (150)
+.++||||+++|++||++++... ++..+.+|+++|||++++++| ++++|++++++..|++||. .....
T Consensus 24 ~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~ 103 (489)
T KOG0156|consen 24 RRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK 103 (489)
T ss_pred CCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence 37889999999999999999766 899999999999999999998 9999999999999999997 22445
Q ss_pred ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 104 SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 104 ~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
.+.+++.|++++++|+.||++||++....|+...++.+.....+|+
T Consensus 104 ~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~ 149 (489)
T KOG0156|consen 104 YLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEV 149 (489)
T ss_pred HhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHH
Confidence 5665788999998999999999999999999999999887776665
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.86 E-value=4.7e-21 Score=145.45 Aligned_cols=113 Identities=35% Similarity=0.705 Sum_probs=94.5
Q ss_pred CCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccccccc
Q 038222 37 KQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSSHE 106 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~l~ 106 (150)
.+.||||.++|++||++++..+++..+.+|.++||+++++++| +++++++.++...|.+++.......+.
T Consensus 33 ~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~ 112 (517)
T PLN02687 33 RPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMA 112 (517)
T ss_pred CCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhc
Confidence 3468899999999999888767889999999999999999887 999999998888898886544333343
Q ss_pred cCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 107 HREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 107 ~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..+.++++..+|+.|+++||++++++|+.++++.|.+.+++++
T Consensus 113 ~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~ 155 (517)
T PLN02687 113 YNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEV 155 (517)
T ss_pred cCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 3344667777899999999999867999999999999998875
No 3
>PLN02183 ferulate 5-hydroxylase
Probab=99.82 E-value=1.3e-19 Score=137.63 Aligned_cols=116 Identities=26% Similarity=0.509 Sum_probs=91.1
Q ss_pred HHhcCCCCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccc
Q 038222 31 ISRGSLKQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPH 100 (150)
Q Consensus 31 ~~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~ 100 (150)
.+.+++.+.||||+++|++|++..+....+..+.+|+++||++++++++ +++++++.+++..|.+++...
T Consensus 29 ~~~~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~ 108 (516)
T PLN02183 29 SRLRRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANI 108 (516)
T ss_pred hhccCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCccc
Confidence 3344456789999999999999877555677889999999999999986 999999998888888876543
Q ss_pred cccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHH
Q 038222 101 AMSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQR 146 (150)
Q Consensus 101 ~~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~ 146 (150)
....+.+++.+.++..+|+.|+++||++.+++|+.++++.+.++++
T Consensus 109 ~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~~ 154 (516)
T PLN02183 109 AISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVRD 154 (516)
T ss_pred chhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333433223446667899999999995449999999999988654
No 4
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.82 E-value=2.5e-19 Score=135.97 Aligned_cols=127 Identities=31% Similarity=0.594 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCC--CCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhC
Q 038222 22 LVWVKALSFISRGSL--KQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDH 89 (150)
Q Consensus 22 ~~~~~~~~~~~~~~~--~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~ 89 (150)
++.++++.+.+++.+ .+.||||.++|++||+.++..+++..+.+|+++||++++++++ +++++++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~ 93 (514)
T PLN03112 14 IFNVLIWRWLNASMRKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQ 93 (514)
T ss_pred HHHHHHHHHccccccCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhC
Confidence 333344444444333 4668999999999999887667888899999999999988876 9999999988
Q ss_pred CCCccCCCcccccc-ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 90 DSSFCNRTVPHAMS-SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 90 ~~~f~~r~~~~~~~-~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
+..|.+++...... ...+.+ +.++..+|+.|+++||++..++|+.++++.+.+.+.+++
T Consensus 94 ~~~f~~~~~~~~~~~~~~g~~-~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~ 153 (514)
T PLN03112 94 DDVFASRPRTLAAVHLAYGCG-DVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEA 153 (514)
T ss_pred CcccccCCCcccceeeccCCC-ceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHH
Confidence 88898776532221 222222 334556799999999997647999999999999987765
No 5
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.81 E-value=5.2e-19 Score=133.91 Aligned_cols=115 Identities=24% Similarity=0.484 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCccccccccCCCC-cHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccccc
Q 038222 35 SLKQLPPGPRPYPVIGNLLELGDK-PHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMS 103 (150)
Q Consensus 35 ~~~~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~ 103 (150)
++.+.||||+..|++|++.++..+ .+..+.+|+++||+++++++| +.+++++.+++..|.+++......
T Consensus 27 ~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~ 106 (503)
T PLN02394 27 KKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFD 106 (503)
T ss_pred CcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHh
Confidence 345679999999999999887544 567889999999999999876 999999988877788776544445
Q ss_pred ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 104 SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 104 ~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
.+.+.+.+.++..+|+.|+++||.+..|+|+++.++.+.+.+++++
T Consensus 107 ~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v 152 (503)
T PLN02394 107 IFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEA 152 (503)
T ss_pred HhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHH
Confidence 5544455567777899999999999669999999999999888775
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.80 E-value=7.3e-19 Score=133.02 Aligned_cols=116 Identities=24% Similarity=0.530 Sum_probs=90.6
Q ss_pred cCCCCCCCCCCCCccccccccCC-CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccc
Q 038222 34 GSLKQLPPGPRPYPVIGNLLELG-DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAM 102 (150)
Q Consensus 34 ~~~~~~~pgp~~~p~~G~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~ 102 (150)
++..+.||||.++|++||+.++. .+++..+.+++++||+++++++| |++++++.++...|.+++.....
T Consensus 24 ~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~ 103 (499)
T PLN03234 24 KKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQ 103 (499)
T ss_pred CCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence 33467799999999999998884 36788899999999999999987 99999999888889888743222
Q ss_pred cccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 103 SSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 103 ~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
......+.++.....++.|+++||.+..++|++++++.+.+.+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~ 150 (499)
T PLN03234 104 QTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEEC 150 (499)
T ss_pred hhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHH
Confidence 22222223334455689999999986449999999999999998875
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.80 E-value=1.1e-18 Score=132.12 Aligned_cols=118 Identities=27% Similarity=0.495 Sum_probs=93.8
Q ss_pred HhcCCCCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccc
Q 038222 32 SRGSLKQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHA 101 (150)
Q Consensus 32 ~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~ 101 (150)
...+..+.||||+++|++|+++.+..+++..+.+|+++||+++++++| +++++++.+++..|.+++....
T Consensus 25 ~~~~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~ 104 (504)
T PLN00110 25 LPKPSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAG 104 (504)
T ss_pred hhcccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccc
Confidence 344456779999999999999887666788999999999999999886 9999999988888988875432
Q ss_pred ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 102 MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 102 ~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
......++.+.++..+|+.|+++||+++++.|+.++++.+.+.+.+++
T Consensus 105 ~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~ 152 (504)
T PLN00110 105 ATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVEL 152 (504)
T ss_pred hhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHH
Confidence 222212223446667799999999999855899999999999887664
No 8
>PLN02971 tryptophan N-hydroxylase
Probab=99.79 E-value=7.2e-19 Score=134.27 Aligned_cols=113 Identities=20% Similarity=0.347 Sum_probs=88.1
Q ss_pred CCCCCCCCCCccccccccCCC-C-cHHHHHHHHHHhC-CceEechH----------HHHHHHHhhCCCCccCCCcccccc
Q 038222 37 KQLPPGPRPYPVIGNLLELGD-K-PHKSLLELAKIHG-PIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMS 103 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~~~-~-~~~~~~~~~~~yG-~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~ 103 (150)
.+.||||+++|++||++++.. + .+..+.+|.++|| +++++++| ++++++|.+++..|.+|+......
T Consensus 56 ~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~~ 135 (543)
T PLN02971 56 HPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQK 135 (543)
T ss_pred CCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccchh
Confidence 457999999999999988732 2 3677889999999 79999887 999999999999999887543333
Q ss_pred ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 104 SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 104 ~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
.+..+..++++..+|+.|+++||+++++.|++..++.+.+.+++++
T Consensus 136 ~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~ 181 (543)
T PLN02971 136 ILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEET 181 (543)
T ss_pred hccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3332223457777899999999999857787777777888777654
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.79 E-value=1.8e-18 Score=131.48 Aligned_cols=111 Identities=17% Similarity=0.325 Sum_probs=87.8
Q ss_pred CCCCCCCCCCccccccccCC---CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccccc
Q 038222 37 KQLPPGPRPYPVIGNLLELG---DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMS 103 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~~---~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~ 103 (150)
.++||||+++|++||++.+. .+++..+.+|+++||+++++++| +++++++.+++..|.+|+......
T Consensus 34 ~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~~ 113 (519)
T PLN00168 34 RRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASSR 113 (519)
T ss_pred CCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccchh
Confidence 45689999999999987653 34678889999999999999987 999999999888898887543322
Q ss_pred ccccCcceeee-cCCCcchHHHHH-HhHhhhcChhhhhhhHHHHHhhh
Q 038222 104 SHEHREFSLAW-MPVSRPWKNIRK-ICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 104 ~l~~~~~~~~~-~~~g~~w~~~Rk-~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
.+ +.+.+++. ..+|+.|+++|| +++ |+|+.++++.|.+.+++++
T Consensus 114 ~~-~~~~~~~~~~~~G~~Wk~~Rr~~~~-~~fs~~~l~~~~~~~~~~~ 159 (519)
T PLN00168 114 LL-GESDNTITRSSYGPVWRLLRRNLVA-ETLHPSRVRLFAPARAWVR 159 (519)
T ss_pred hh-ccCCCceeCCCCCHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 23 22223343 357999999987 566 9999999999999998765
No 10
>PTZ00404 cytochrome P450; Provisional
Probab=99.77 E-value=3.7e-18 Score=128.72 Aligned_cols=109 Identities=25% Similarity=0.449 Sum_probs=89.6
Q ss_pred CCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccccc-cc
Q 038222 37 KQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMS-SH 105 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~-~l 105 (150)
.+.+|||+++|++||+..+..+++..+.+|+++||++++++++ +++++++.++...|.+++...... ..
T Consensus 28 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~ 107 (482)
T PTZ00404 28 KNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGT 107 (482)
T ss_pred CCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeec
Confidence 5668999999999999888667889999999999999999876 999999988777787776443221 11
Q ss_pred ccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 106 EHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 106 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
. +.|++ ..+|+.|+++||+++ ++|+.++++.+.+.+.+++
T Consensus 108 ~--~~~l~-~~~g~~w~~~Rk~~~-~~f~~~~l~~~~~~i~~~~ 147 (482)
T PTZ00404 108 F--YHGIV-TSSGEYWKRNREIVG-KAMRKTNLKHIYDLLDDQV 147 (482)
T ss_pred c--CCcee-ccChHHHHHHHHHHH-HHHhhhccccHHHHHHHHH
Confidence 2 34544 457999999999999 9999999999999998775
No 11
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.74 E-value=1.5e-17 Score=124.98 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=84.7
Q ss_pred CCCCCCCCCCccccccccC-CCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccc-cccc
Q 038222 37 KQLPPGPRPYPVIGNLLEL-GDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPH-AMSS 104 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~-~~~~ 104 (150)
.+.||||+++|++||+.++ ..+++..+.+++++||++++++++ +++++++.++...|. +... ....
T Consensus 34 ~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~~~~~~~~ 111 (463)
T PLN02196 34 LPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PTFPASKER 111 (463)
T ss_pred CCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--ccCchHHHH
Confidence 4568888889999998875 567889999999999999999876 999999988776663 2211 1122
Q ss_pred cccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 105 HEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 105 l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..+ +.+ ++..+|+.|+++||+++ +.|++++++.+.+.+++++
T Consensus 112 ~~g-~~~-l~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~ 153 (463)
T PLN02196 112 MLG-KQA-IFFHQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIA 153 (463)
T ss_pred HcC-ccc-ccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence 222 224 44457999999999999 9999999999999998875
No 12
>PLN02966 cytochrome P450 83A1
Probab=99.74 E-value=1.7e-17 Score=125.71 Aligned_cols=113 Identities=29% Similarity=0.514 Sum_probs=88.3
Q ss_pred CCCCCCCCCCCccccccccC-CCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccccc
Q 038222 36 LKQLPPGPRPYPVIGNLLEL-GDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSS 104 (150)
Q Consensus 36 ~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~ 104 (150)
..+.||||+++|++||+.++ ..+++..+.+|+++||++++++++ +++++++.++...|.+++.......
T Consensus 27 ~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~ 106 (502)
T PLN02966 27 RYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEF 106 (502)
T ss_pred CCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCcccee
Confidence 35679999999999999887 446888999999999999998876 9999999988777876653222222
Q ss_pred cccCcceeeecCCCcchHHHHHH-hHhhhcChhhhhhhHHHHHhhh
Q 038222 105 HEHREFSLAWMPVSRPWKNIRKI-CNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 105 l~~~~~~~~~~~~g~~w~~~Rk~-~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
...+..++.+..+|+.|+++||. ++ ++|+.++++.|.+.+++++
T Consensus 107 ~~~~~~~~~~~~~g~~w~~~R~~~~~-~~f~~~~l~~~~~~i~~~~ 151 (502)
T PLN02966 107 ISYGRRDMALNHYTPYYREIRKMGMN-HLFSPTRVATFKHVREEEA 151 (502)
T ss_pred eccCcceeeeCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Confidence 21212234455569999999999 55 9999999999999988875
No 13
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=3.5e-17 Score=122.20 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=84.6
Q ss_pred cCCCCCCCCCCCCccccccccCC--CCcHHH-HHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCC--c
Q 038222 34 GSLKQLPPGPRPYPVIGNLLELG--DKPHKS-LLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRT--V 98 (150)
Q Consensus 34 ~~~~~~~pgp~~~p~~G~~~~~~--~~~~~~-~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~--~ 98 (150)
.+..+.+|+|+++|++||+..+. +..... ...|.++ |+++.++.+ |++++|+++++++|.+|. .
T Consensus 27 yw~rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~ 105 (499)
T KOG0158|consen 27 YWRRRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPI 105 (499)
T ss_pred hhccCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCC
Confidence 34466899999999999998873 223333 3444444 999999987 999999999999999854 2
Q ss_pred ccccc-ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 99 PHAMS-SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 99 ~~~~~-~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..... ++. ...++..+|+.||++|..++ |.||+.+++.+.+++++++
T Consensus 106 ~~d~~~~l~---~~~Lf~~~g~~WK~lR~~ls-P~Fts~kmk~m~~t~~~~~ 153 (499)
T KOG0158|consen 106 YGDPEDPLS---ALNLFFLRGERWKRLRTKLS-PTFTSGKLKKMFPTMEEVG 153 (499)
T ss_pred cCCCCCccc---ccCchhccCchHHHHHHhhc-cccchhhHHHHHHHHHHHH
Confidence 11111 222 12356667999999999999 9999999999999999876
No 14
>PLN02290 cytokinin trans-hydroxylase
Probab=99.72 E-value=1.2e-17 Score=126.82 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCccccccccCCC-------------------CcHHHHHHHHHHhCCceEechH----------HHHHHHH
Q 038222 36 LKQLPPGPRPYPVIGNLLELGD-------------------KPHKSLLELAKIHGPIMSLKLA----------SMVKTIL 86 (150)
Q Consensus 36 ~~~~~pgp~~~p~~G~~~~~~~-------------------~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il 86 (150)
..+.+|||+++|++||++++.. +....+.+|+++||+++++++| +++++++
T Consensus 40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il 119 (516)
T PLN02290 40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL 119 (516)
T ss_pred HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence 3667999999999999987631 2223568899999999999987 9999999
Q ss_pred hhCCCCccCCCcccc--ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 87 LDHDSSFCNRTVPHA--MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 87 ~~~~~~f~~r~~~~~--~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
.++. .+.+++.... ..... |.++ +..+|+.|+++||+++ ++|+.++++.+.+.+++++
T Consensus 120 ~~~~-~~~~r~~~~~~~~~~~~--g~~l-~~~~g~~Wk~~Rk~~~-~~f~~~~l~~~~~~i~~~~ 179 (516)
T PLN02290 120 TKYN-TVTGKSWLQQQGTKHFI--GRGL-LMANGADWYHQRHIAA-PAFMGDRLKGYAGHMVECT 179 (516)
T ss_pred hcCC-CCCCCcchhhhHHHHHh--cCCc-cccCchHHHHHHhhcc-cccCHHHHHHHHHHHHHHH
Confidence 8763 4555543211 12222 2344 4457999999999999 9999999999999998775
No 15
>PLN02774 brassinosteroid-6-oxidase
Probab=99.72 E-value=1.5e-17 Score=124.93 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=85.3
Q ss_pred cCCCCCCCCCCCCccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccccc
Q 038222 34 GSLKQLPPGPRPYPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMS 103 (150)
Q Consensus 34 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~ 103 (150)
+.+.+.||||+++|++||+..+..++...+.++.++||++++++++ +++++++.+++..|..+......
T Consensus 27 ~~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~- 105 (463)
T PLN02774 27 YSKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSML- 105 (463)
T ss_pred cCCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHH-
Confidence 3445668899999999998877556777889999999999999986 99999998877776433222222
Q ss_pred ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhh-hHHHHHhhh
Q 038222 104 SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDT-NQDLQRKKS 149 (150)
Q Consensus 104 ~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~-~~~~~~~~~ 149 (150)
.+.+ +.+++ ..+|+.|+++||+++ ++|+++.++. +.+.+++.+
T Consensus 106 ~~lg-~~~~~-~~~g~~w~~~R~~l~-~~~~~~~~~~~~~~~~~~~~ 149 (463)
T PLN02774 106 DILG-TCNIA-AVHGSTHRYMRGSLL-SLISPTMIRDHLLPKIDEFM 149 (463)
T ss_pred HHhC-ccchh-hcCCHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHH
Confidence 2333 22444 457999999999998 9999999986 688887654
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.72 E-value=2.6e-17 Score=124.35 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=80.6
Q ss_pred CCCCCCCCCCccccccccC-C----CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccc
Q 038222 37 KQLPPGPRPYPVIGNLLEL-G----DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHA 101 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~-~----~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~ 101 (150)
.+.||||+++|++||+..+ . ..++..+.+++++||+++++++| +++++++.+++..|.++.....
T Consensus 37 ~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~~ 116 (490)
T PLN02500 37 FNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRSI 116 (490)
T ss_pred CCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchHH
Confidence 4668999999999997643 1 34567789999999999999876 9999999988777754422211
Q ss_pred ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhh-hHHHHHhh
Q 038222 102 MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDT-NQDLQRKK 148 (150)
Q Consensus 102 ~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~-~~~~~~~~ 148 (150)
..+.+ +.++++ .+|+.|+++||+++ ++|++.+++. +.+.+++.
T Consensus 117 -~~~~g-~~~~~~-~~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~ 160 (490)
T PLN02500 117 -GGILG-KWSMLV-LVGDMHRDMRSISL-NFLSHARLRTHLLKEVERH 160 (490)
T ss_pred -HHHhC-cccccc-cCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence 22222 224444 47999999999999 9999999987 45666554
No 17
>PLN02655 ent-kaurene oxidase
Probab=99.72 E-value=2.1e-17 Score=124.22 Aligned_cols=110 Identities=22% Similarity=0.322 Sum_probs=87.7
Q ss_pred CCCCCCCccccccccCC-CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccccccccC
Q 038222 40 PPGPRPYPVIGNLLELG-DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSSHEHR 108 (150)
Q Consensus 40 ~pgp~~~p~~G~~~~~~-~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~l~~~ 108 (150)
||||+++|++||++++. .+++..+.+|+++||++++++++ +++++++.+++..|.+++.......+.++
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 68999999999998885 45889999999999999999987 99999999999999888644333434443
Q ss_pred cceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 109 EFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 109 ~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
+..+.+.++|+.|+++||.+.++.|+...++.+.+.+++++
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~ 121 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLI 121 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHH
Confidence 33445545699999999888758899888888888776653
No 18
>PLN03018 homomethionine N-hydroxylase
Probab=99.67 E-value=1.2e-15 Score=116.38 Aligned_cols=109 Identities=23% Similarity=0.371 Sum_probs=78.2
Q ss_pred CCCCCCCCCccccccccCC-CCcH-HHHHHHHHHh-CCceEechH----------HHHHHHHhhCCCCccCCCccccccc
Q 038222 38 QLPPGPRPYPVIGNLLELG-DKPH-KSLLELAKIH-GPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSS 104 (150)
Q Consensus 38 ~~~pgp~~~p~~G~~~~~~-~~~~-~~~~~~~~~y-G~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~ 104 (150)
+.||||+++|++||++++. .++. ..+.++.++| |+++++++| +++++++.+++..|++|+.......
T Consensus 40 ~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~ 119 (534)
T PLN03018 40 QLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMET 119 (534)
T ss_pred CCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhh
Confidence 3589999999999998873 2232 3455556665 799999986 9999999988888998876544444
Q ss_pred cccCcceeeecCCCcchHHHHHHhHhhhcChhh-hhhhHHHHHh
Q 038222 105 HEHREFSLAWMPVSRPWKNIRKICNMLIFTTQK-LDTNQDLQRK 147 (150)
Q Consensus 105 l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~-l~~~~~~~~~ 147 (150)
+..++.++++..+|+.|+++||+++ +.|...+ .+.+.+++++
T Consensus 120 l~~~~~~i~~~~~G~~Wk~~Rk~l~-~~~~~~~~~~~~~~~~~~ 162 (534)
T PLN03018 120 IGDNYKSMGTSPYGEQFMKMKKVIT-TEIMSVKTLNMLEAARTI 162 (534)
T ss_pred hccCCCceEecCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 4333345677667999999999999 7764444 4444444433
No 19
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.65 E-value=1.4e-15 Score=114.86 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCCCCCCCCccccccccC-----CCCcHHHHHHHHHHhCC--ceEechH----------HHHHHHHhhCCCCccCCCcc
Q 038222 37 KQLPPGPRPYPVIGNLLEL-----GDKPHKSLLELAKIHGP--IMSLKLA----------SMVKTILLDHDSSFCNRTVP 99 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~--v~~~~~~----------~~~~~il~~~~~~f~~r~~~ 99 (150)
.++||||.++|++|+++++ ..+++..+.+++++||+ +++++++ +++++++.++ +.|.++...
T Consensus 41 ~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~ 119 (490)
T PLN02302 41 PPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPE 119 (490)
T ss_pred CCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCch
Confidence 4679999999999998876 24678889999999997 6887765 9999999765 456544222
Q ss_pred ccccccccCcceeeecCCCcchHHHHHHhHhhhcC-hhhhhhhHHHHHhhh
Q 038222 100 HAMSSHEHREFSLAWMPVSRPWKNIRKICNMLIFT-TQKLDTNQDLQRKKS 149 (150)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~-~~~l~~~~~~~~~~~ 149 (150)
.... +.+ .+.+...+|+.|+++||.++ +.|+ +++++.+.+.+++++
T Consensus 120 ~~~~-~~g--~~~~~~~~g~~w~~~R~~~~-~~f~~~~~l~~~~~~i~~~v 166 (490)
T PLN02302 120 STVE-LIG--RKSFVGITGEEHKRLRRLTA-APVNGPEALSTYIPYIEENV 166 (490)
T ss_pred hHHH-Hhc--cccccccCcHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHH
Confidence 2222 222 22344457999999999999 8884 788999999998875
No 20
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.62 E-value=2.3e-15 Score=113.41 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=76.5
Q ss_pred CCCCCCCCCCccccccccCC-----CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcccc
Q 038222 37 KQLPPGPRPYPVIGNLLELG-----DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHA 101 (150)
Q Consensus 37 ~~~~pgp~~~p~~G~~~~~~-----~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~ 101 (150)
.++||||.++|++||++++. .++...+.+++++||++++++++ +++++++.++...|.++... .
T Consensus 29 ~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~-~ 107 (472)
T PLN02987 29 MRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPG-S 107 (472)
T ss_pred CCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcH-H
Confidence 45688999999999998762 45788889999999999999875 99999999988888655322 2
Q ss_pred ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhH
Q 038222 102 MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQ 142 (150)
Q Consensus 102 ~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~ 142 (150)
...+.+ +.++++. +|+.|+++||++. +.++.+.++.+.
T Consensus 108 ~~~~lg-~~~l~~~-~g~~wr~~R~~~~-~f~~~~~~~~~~ 145 (472)
T PLN02987 108 ISNLLG-KHSLLLM-KGNLHKKMHSLTM-SFANSSIIKDHL 145 (472)
T ss_pred HHHHhC-ccccccc-CcHHHHHHHHHHH-HhcChHHHHHHH
Confidence 223333 2455554 6999999999987 755655665543
No 21
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.60 E-value=2.9e-15 Score=113.43 Aligned_cols=110 Identities=25% Similarity=0.379 Sum_probs=88.2
Q ss_pred CCCCCCCCCCCccccccccCC-C--CcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccc-c
Q 038222 36 LKQLPPGPRPYPVIGNLLELG-D--KPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPH-A 101 (150)
Q Consensus 36 ~~~~~pgp~~~p~~G~~~~~~-~--~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~-~ 101 (150)
....+|||+++|++|++.++. . +......++..+||++++.|++ +.+++|+.++...+.+.+... .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 456799999999999998873 3 4667788999999999999986 999999976666666555444 5
Q ss_pred ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 102 MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 102 ~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..++.|. |+++. +|+.|+++||+++ |+|+.+.++.+...+.+++
T Consensus 113 ~~~~lG~--gll~~-~g~~W~~~Rk~~~-~~f~~~~L~~~~~~~~~~~ 156 (497)
T KOG0157|consen 113 LKPWLGD--GLLFS-DGEKWHKHRKLLT-PAFHFEILKSFVPVFIESS 156 (497)
T ss_pred HHHHhcC--ccccC-CchHHHHHHhhcc-HhhhHHHHHHHHHHHHHHH
Confidence 5566653 55555 4999999999999 9999999999988877654
No 22
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.59 E-value=5.4e-15 Score=112.50 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=76.7
Q ss_pred CCCCCCCCCccccccccCCCCcHHHHHHHHHHh---CCceEechH----------HHHHHHHhhCCCCccCCCccc-ccc
Q 038222 38 QLPPGPRPYPVIGNLLELGDKPHKSLLELAKIH---GPIMSLKLA----------SMVKTILLDHDSSFCNRTVPH-AMS 103 (150)
Q Consensus 38 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~-~~~ 103 (150)
+.+|||+++|++||+..+..+ +..+.+|.++| |++++++++ +++++|+.++...|.+++... ...
T Consensus 30 ~~~pgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 108 (516)
T PLN03195 30 RNRKGPKSWPIIGAALEQLKN-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYME 108 (516)
T ss_pred cccCCCCCCCeecchHHHHhc-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHH
Confidence 347899999999998755322 34567778888 899999876 999999987666676543221 112
Q ss_pred ccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHH
Q 038222 104 SHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQR 146 (150)
Q Consensus 104 ~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~ 146 (150)
.+.+ .++ +..+|+.|+++||+++ ++|+.++++.+.+.+.
T Consensus 109 ~~~g--~~l-~~~~g~~w~~~Rr~l~-~~fs~~~l~~~~~~~~ 147 (516)
T PLN03195 109 VLLG--DGI-FNVDGELWRKQRKTAS-FEFASKNLRDFSTVVF 147 (516)
T ss_pred HHhc--Cee-eccCcHHHHHHHHhcc-hhhhHHHHHHHHHHHH
Confidence 2333 344 4467999999999999 9999999999998763
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.58 E-value=4.1e-15 Score=111.48 Aligned_cols=109 Identities=14% Similarity=0.263 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCCccccccccCC-----CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCcc
Q 038222 35 SLKQLPPGPRPYPVIGNLLELG-----DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVP 99 (150)
Q Consensus 35 ~~~~~~pgp~~~p~~G~~~~~~-----~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~ 99 (150)
++.+.||||.++|++||++.+. .+++.++.+|+++||++++++++ +++++++.+++..|..+..
T Consensus 4 ~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~- 82 (452)
T PLN03141 4 KKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP- 82 (452)
T ss_pred CCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc-
Confidence 4466788999999999988762 46788899999999999999987 9999999988887765532
Q ss_pred ccccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhh-HHHHHh
Q 038222 100 HAMSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTN-QDLQRK 147 (150)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~-~~~~~~ 147 (150)
.....+.+. .+++ ..+|+.|+++|++++ +.|+..+++.+ .+.+.+
T Consensus 83 ~~~~~l~g~-~~~~-~~~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~ 128 (452)
T PLN03141 83 KSLTELMGK-SSIL-LINGSLQRRVHGLIG-AFLKSPHLKAQITRDMER 128 (452)
T ss_pred hhHHHHhCc-cccc-ccCcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 223334432 3444 456999999999999 99988877764 444443
No 24
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.52 E-value=9.9e-14 Score=105.27 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred cCCCCCCCCCCCCccccccccCCCC---cHHHHHHHHHHhCCceE---echH----------HHHHHHHhhCCCCccCCC
Q 038222 34 GSLKQLPPGPRPYPVIGNLLELGDK---PHKSLLELAKIHGPIMS---LKLA----------SMVKTILLDHDSSFCNRT 97 (150)
Q Consensus 34 ~~~~~~~pgp~~~p~~G~~~~~~~~---~~~~~~~~~~~yG~v~~---~~~~----------~~~~~il~~~~~~f~~r~ 97 (150)
+++++..|||+++|++||+..+..+ ..+.+.+..++||..++ .++| +++++|+.+++..|.+++
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~ 106 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGP 106 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcH
Confidence 3344568999999999998766322 23334444445786655 4444 999999998888887765
Q ss_pred ccccccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhh
Q 038222 98 VPHAMSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDT 140 (150)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~ 140 (150)
.......+. |.|+++ .+|+.|+++||+++ |+|+.++++.
T Consensus 107 ~~~~~~~~~--g~gl~~-~~g~~Wr~~Rk~l~-p~F~~~~~~~ 145 (500)
T PLN02169 107 EFKKIFDVL--GEGILT-VDFELWEDLRKSNH-ALFHNQDFIE 145 (500)
T ss_pred HHHHHHHhh--cCcccc-cCcHHHHHHHHHHH-HHhhhHHHHH
Confidence 332223333 345554 56999999999999 9999997763
No 25
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.50 E-value=7.4e-15 Score=108.85 Aligned_cols=107 Identities=28% Similarity=0.506 Sum_probs=83.4
Q ss_pred CCCCCCCccccccccCC--CCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccccc--c
Q 038222 40 PPGPRPYPVIGNLLELG--DKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSS--H 105 (150)
Q Consensus 40 ~pgp~~~p~~G~~~~~~--~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~--l 105 (150)
||||+++|++||+..+. .+++..+.+++++||++++++++ +++++++.++...|..++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 78999999999999885 56788899999999999999986 9999999988777766543322221 1
Q ss_pred ccCcceeeecCCCcchHHHHHHhHhhhcChh-hhhhhHHHHHhhh
Q 038222 106 EHREFSLAWMPVSRPWKNIRKICNMLIFTTQ-KLDTNQDLQRKKS 149 (150)
Q Consensus 106 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~-~l~~~~~~~~~~~ 149 (150)
...+.+++ ..+|+.|+.+|+.++ +.|+.. .+ .+.+.+++++
T Consensus 81 ~~~~~~l~-~~~~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~ 122 (463)
T PF00067_consen 81 PFGGKGLF-FSDGERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEA 122 (463)
T ss_dssp HHTTTSST-TSSHHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccc-ccccccccc-cccccccccc
Confidence 11234444 455899999999999 999998 56 8888887764
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.39 E-value=7.3e-13 Score=100.32 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCCCCCCCCccccccccC-----CCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccc
Q 038222 38 QLPPGPRPYPVIGNLLEL-----GDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAM 102 (150)
Q Consensus 38 ~~~pgp~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~ 102 (150)
++-.|-.++|++|+..+. .+.++..+.+|+++||+++++++| |++++|+.+++..|.+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~ 91 (489)
T PLN02936 12 RLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVS 91 (489)
T ss_pred ccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhh
Confidence 334667789999987655 356788999999999999999986 99999998877788776533322
Q ss_pred cccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHH-HHHhh
Q 038222 103 SSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQD-LQRKK 148 (150)
Q Consensus 103 ~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~-~~~~~ 148 (150)
..+.+ .+++ ..+|+.|+++||+++ |.|+.++++.+.+ +++++
T Consensus 92 ~~~~~--~~i~-~~~g~~wk~~Rk~l~-~~f~~~~l~~~~~~~~~~~ 134 (489)
T PLN02936 92 EFLFG--SGFA-IAEGELWTARRRAVV-PSLHRRYLSVMVDRVFCKC 134 (489)
T ss_pred HHHhc--Cccc-cCCchHHHHHHHhhc-CccCHHHHHHHHHHHHHHH
Confidence 23332 3444 456999999999999 9999989888754 55444
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.31 E-value=4.3e-12 Score=98.68 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=73.2
Q ss_pred cccccC-CCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCccccccccccCcceeeecCCC
Q 038222 50 GNLLEL-GDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTVPHAMSSHEHREFSLAWMPVS 118 (150)
Q Consensus 50 G~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~~~~~~~l~~~~~~~~~~~~g 118 (150)
||+..+ +++.+..+.+|+++||||+++++| +.+++|+.++...|.+++......... +.+++ ..+|
T Consensus 143 G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~--g~~l~-~~dg 219 (633)
T PLN02738 143 GSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVM--GKGLI-PADG 219 (633)
T ss_pred CcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhcc--CCcee-cCCc
Confidence 444444 355678889999999999999866 999999988777777654322222222 34544 4579
Q ss_pred cchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 119 RPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 119 ~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
+.|+.+|+.++ |+|+.+.++.+.+.+++++
T Consensus 220 e~wr~rRr~l~-p~Fs~~~v~~l~~~i~~~v 249 (633)
T PLN02738 220 EIWRVRRRAIV-PALHQKYVAAMISLFGQAS 249 (633)
T ss_pred HHHHHHHHhcc-HhhhHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999998765
No 28
>PLN02648 allene oxide synthase
Probab=99.21 E-value=9e-12 Score=94.10 Aligned_cols=108 Identities=6% Similarity=0.009 Sum_probs=78.7
Q ss_pred CCCCCCCCCccccccccC-----CCCcHHHHHHHHHHhCC-ceEechH-----------------HHHHHHHhh----CC
Q 038222 38 QLPPGPRPYPVIGNLLEL-----GDKPHKSLLELAKIHGP-IMSLKLA-----------------SMVKTILLD----HD 90 (150)
Q Consensus 38 ~~~pgp~~~p~~G~~~~~-----~~~~~~~~~~~~~~yG~-v~~~~~~-----------------~~~~~il~~----~~ 90 (150)
+.|||+.++|++|+..++ ..++..++.+..+|||+ ||+.+++ |+++.++.+ +.
T Consensus 17 ~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~ 96 (480)
T PLN02648 17 REIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKR 96 (480)
T ss_pred CCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcccc
Confidence 458999999999998754 34567899999999999 9997751 788888864 43
Q ss_pred CCccCCCccccccccccCcc-eeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 91 SSFCNRTVPHAMSSHEHREF-SLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 91 ~~f~~r~~~~~~~~l~~~~~-~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..|.... ..... +.|... ..++..+|+.|+++||++. ++|+ ..++.|.+.|++++
T Consensus 97 ~~~~~~~-~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~-~~f~-~~~~~~~~~m~~~~ 152 (480)
T PLN02648 97 DVFTGTY-MPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLF-ELLK-SRHRRFIPEFRAAF 152 (480)
T ss_pred ccceeee-ccCcc-ccCCceeeeecCCCCchHHHHHHHHH-HHHH-HhhhhhhhHHHHHH
Confidence 3343321 12223 443211 1455667999999999999 9999 57799999998875
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=2e-10 Score=85.66 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=84.8
Q ss_pred CCCCCCCccccccccC----CCCcHHHHHHHHHHhCCceEec-hH----------HHHHHHHhhCCCCccCCC-cccc--
Q 038222 40 PPGPRPYPVIGNLLEL----GDKPHKSLLELAKIHGPIMSLK-LA----------SMVKTILLDHDSSFCNRT-VPHA-- 101 (150)
Q Consensus 40 ~pgp~~~p~~G~~~~~----~~~~~~~~~~~~~~yG~v~~~~-~~----------~~~~~il~~~~~~f~~r~-~~~~-- 101 (150)
+|||..+|++|.+... ..+.|......+++||+||+.. +| +.++.++..++ .++-|| ....
T Consensus 52 IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG-~~P~Rp~~~~~w~ 130 (519)
T KOG0159|consen 52 IPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEG-KYPFRPLLIEPWV 130 (519)
T ss_pred cCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCC-CCCCcccccchhh
Confidence 8999999999988743 2678899999999999999999 56 89999997654 467775 2111
Q ss_pred -ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 102 -MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 102 -~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
..+..++..|++.. +|++|++.|..+++...+++.++.|.|.+++.+
T Consensus 131 ~~rd~~~~~~Gl~~~-~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~ 178 (519)
T KOG0159|consen 131 AYRDFRGGVCGLFLL-EGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVS 178 (519)
T ss_pred hhHHhhccCCCcccC-CCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHH
Confidence 13444444565554 599999999999988899999999999988765
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=1.2e-09 Score=80.28 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=82.0
Q ss_pred CCCCCCCC-CccccccccCCCCcHHHHHHHHHHhCCceEechH----------HHHHHHHhhCCCCccCCCc-ccccccc
Q 038222 38 QLPPGPRP-YPVIGNLLELGDKPHKSLLELAKIHGPIMSLKLA----------SMVKTILLDHDSSFCNRTV-PHAMSSH 105 (150)
Q Consensus 38 ~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~~il~~~~~~f~~r~~-~~~~~~l 105 (150)
..||--.+ .|++|+...++.++..++.++.+|||+||++.++ +....++.......+.+.. ..+..+.
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~v 110 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPV 110 (486)
T ss_pred CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhh
Confidence 35665554 4899999999999999999999999999999875 6676777554333332221 1222333
Q ss_pred ccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 106 EHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 106 ~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
. |+|++....+....++-+.+. .++....++.|++.|.++.
T Consensus 111 F--g~~v~~d~~~~~~~e~~~~~k-~~L~~~~lk~~~e~m~~el 151 (486)
T KOG0684|consen 111 F--GKGVVYDVPNHVMMEQKKFFK-SALGGVALKSLVELMLEEL 151 (486)
T ss_pred c--CCCccccCCCchHHHHHHHHH-HHhchhhHHHHHHHHHHHH
Confidence 3 456677677888999999999 9999999999999998774
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.01 E-value=3.2e-09 Score=80.93 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=67.6
Q ss_pred CccccccccCCCCcHHHHHHHHHHhC-CceEechH--------HHHHHHHhhCCCCccCCCcc-ccccccccCcceeeec
Q 038222 46 YPVIGNLLELGDKPHKSLLELAKIHG-PIMSLKLA--------SMVKTILLDHDSSFCNRTVP-HAMSSHEHREFSLAWM 115 (150)
Q Consensus 46 ~p~~G~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~--------~~~~~il~~~~~~f~~r~~~-~~~~~l~~~~~~~~~~ 115 (150)
.++.|+......+..+.+..+.++++ .+++++.. +++++++.+++..|.+.... .....+.+ .|++ .
T Consensus 49 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g--~gi~-~ 125 (502)
T PLN02426 49 AYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGNTITANPENVEYMLKTRFDNYPKGKPFSAILGDLLG--RGIF-N 125 (502)
T ss_pred CCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCcEEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcC--Ccee-e
Confidence 45777766543456777767888876 45666532 99999999887788655322 22233333 4544 4
Q ss_pred CCCcchHHHHHHhHhhhcChhhhhhhH--HHHHh
Q 038222 116 PVSRPWKNIRKICNMLIFTTQKLDTNQ--DLQRK 147 (150)
Q Consensus 116 ~~g~~w~~~Rk~~~~~~f~~~~l~~~~--~~~~~ 147 (150)
.+|+.|+++||+++ +.|+.+.++.+. +++++
T Consensus 126 ~~g~~wk~~Rk~l~-~~fs~~~l~~~~~~~~~~~ 158 (502)
T PLN02426 126 VDGDSWRFQRKMAS-LELGSVSIRSYAFEIVASE 158 (502)
T ss_pred cCcHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHH
Confidence 67999999999999 999999998874 44443
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=2.4e-05 Score=58.47 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCCCccCCCcccc----ccccccCcceeeecCCCcchHHHHHHhHhhhcChhhhhhhHHHHHhhh
Q 038222 80 SMVKTILLDHDSSFCNRTVPHA----MSSHEHREFSLAWMPVSRPWKNIRKICNMLIFTTQKLDTNQDLQRKKS 149 (150)
Q Consensus 80 ~~~~~il~~~~~~f~~r~~~~~----~~~l~~~~~~~~~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~~~~~~ 149 (150)
+.+++++.++. .+++...... ..+.. +.+.++..||+.|+++||+++ ++|+++.++.|.+.+++.+
T Consensus 57 ~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ll~~dg~~H~r~Rkl~~-~~F~~~~~~~~~~~i~~~~ 126 (411)
T COG2124 57 ADVREVLRDPR-FFSSALGAGLRPRLLRPVL--GDGSLLTLDGPEHTRLRKLLA-PAFTPRALRGYRPLIREIA 126 (411)
T ss_pred HHHHHHHcCcc-cccccccccccccchhhhc--cccceeecCCHHHHHHHHHhc-cccCHHHHHHHHHHHHHHH
Confidence 99999997763 2222221111 12332 334355567999999999999 9999999999999998875
No 33
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=59.41 E-value=11 Score=27.42 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=4.1
Q ss_pred HHHHHHHHhc
Q 038222 25 VKALSFISRG 34 (150)
Q Consensus 25 ~~~~~~~~~~ 34 (150)
+++|..++++
T Consensus 273 vIIYLILRYR 282 (299)
T PF02009_consen 273 VIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 34
>PTZ00046 rifin; Provisional
Probab=52.14 E-value=23 Score=26.43 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 038222 21 TLVWVKALSFISRGSL 36 (150)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (150)
+++.+++|..+|++|+
T Consensus 328 VLIMvIIYLILRYRRK 343 (358)
T PTZ00046 328 VLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3333445555555443
No 35
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=52.05 E-value=23 Score=26.36 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 038222 21 TLVWVKALSFISRGSL 36 (150)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (150)
+++.+++|..+|++|+
T Consensus 323 VLIMvIIYLILRYRRK 338 (353)
T TIGR01477 323 VLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3333445555555443
No 36
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=39.21 E-value=87 Score=19.03 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=7.1
Q ss_pred CccccccccC
Q 038222 46 YPVIGNLLEL 55 (150)
Q Consensus 46 ~p~~G~~~~~ 55 (150)
-|+.||+...
T Consensus 46 ~p~YgNL~~~ 55 (107)
T PF15330_consen 46 DPCYGNLELQ 55 (107)
T ss_pred Cccccccccc
Confidence 4778887654
No 37
>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=36.21 E-value=1.3e+02 Score=20.13 Aligned_cols=22 Identities=45% Similarity=0.757 Sum_probs=14.1
Q ss_pred CCCCCCCCCccccccccCCCCc
Q 038222 38 QLPPGPRPYPVIGNLLELGDKP 59 (150)
Q Consensus 38 ~~~pgp~~~p~~G~~~~~~~~~ 59 (150)
..|-.|+..|.=|-..+.++++
T Consensus 148 ~~P~~pKqYP~~gL~~e~ggdp 169 (179)
T PF05821_consen 148 YRPVMPKQYPYNGLYLELGGDP 169 (179)
T ss_pred CCCCCcccCCCCCeecccCCCC
Confidence 3466777788777666665544
No 38
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.50 E-value=73 Score=17.18 Aligned_cols=10 Identities=10% Similarity=-0.087 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 038222 25 VKALSFISRG 34 (150)
Q Consensus 25 ~~~~~~~~~~ 34 (150)
.+++..+++.
T Consensus 24 avi~~ayr~~ 33 (60)
T COG4736 24 AVIYFAYRPG 33 (60)
T ss_pred HHHHHHhccc
Confidence 3344444433
No 39
>PHA03030 hypothetical protein; Provisional
Probab=29.85 E-value=50 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038222 13 CFILWLVITLVWVKALSFIS 32 (150)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (150)
++.++++.++++++++.+++
T Consensus 3 ci~~ili~lfifl~iffYI~ 22 (122)
T PHA03030 3 CIFLILIFLFIFLFIFFYIR 22 (122)
T ss_pred eehHHHHHHHHHHHHHHHhe
Confidence 33333333333333344443
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=28.44 E-value=73 Score=19.49 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHhCCceEechH
Q 038222 59 PHKSLLELAKIHGPIMSLKLA 79 (150)
Q Consensus 59 ~~~~~~~~~~~yG~v~~~~~~ 79 (150)
..+.+-++.-+||+|.++.+|
T Consensus 31 TseemydlFGkyg~IrQIRiG 51 (124)
T KOG0114|consen 31 TSEEMYDLFGKYGTIRQIRIG 51 (124)
T ss_pred cHHHHHHHhhcccceEEEEec
Confidence 356677888899999999998
No 41
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=28.20 E-value=1.3e+02 Score=18.98 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 038222 60 HKSLLELA 67 (150)
Q Consensus 60 ~~~~~~~~ 67 (150)
|+.+.+++
T Consensus 38 hd~F~~~A 45 (126)
T PF07912_consen 38 HDAFKKLA 45 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 42
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=27.13 E-value=1.8e+02 Score=21.63 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred Ccc-ccccccCCCCcHHHHHHHHHHhC-CceEe---chH------HHHHHHHhhCCCCccCC--Ccccc-ccccccCcce
Q 038222 46 YPV-IGNLLELGDKPHKSLLELAKIHG-PIMSL---KLA------SMVKTILLDHDSSFCNR--TVPHA-MSSHEHREFS 111 (150)
Q Consensus 46 ~p~-~G~~~~~~~~~~~~~~~~~~~yG-~v~~~---~~~------~~~~~il~~~~~~f~~r--~~~~~-~~~l~~~~~~ 111 (150)
.|. +|..-...........+++++|| +-|.+ |+. +-++.++......++-- -.+.. ...+-+....
T Consensus 45 ~P~~lGyYdl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~gk~lLe~p~~~~l~~~~~d~pFcl~WAN~~w~~~w~g~~~~ 124 (345)
T PF14307_consen 45 VPLDLGYYDLRDPEVMEKQAELAKEYGIDGFCFYHYWFNGKRLLEKPLENLLASKEPDFPFCLCWANENWTRRWDGRNNE 124 (345)
T ss_pred CCCcCCcccCCCHHHHHHHHHHHHHhCCCEEEEEeeecCCchHHHHHHHHHHhcCCCCCcEEEEECCChhhhccCCCCcc
Confidence 566 66432223445677889999999 44443 442 55566664333322110 00110 0111111122
Q ss_pred eeecC-C--CcchHHHHHHhHhhhcChhh
Q 038222 112 LAWMP-V--SRPWKNIRKICNMLIFTTQK 137 (150)
Q Consensus 112 ~~~~~-~--g~~w~~~Rk~~~~~~f~~~~ 137 (150)
++... . .+.|+++=+.+. +.|+..+
T Consensus 125 ~l~~q~y~~~~d~~~~~~~l~-~~F~D~r 152 (345)
T PF14307_consen 125 ILIEQKYSGEDDWKEHFRYLL-PYFKDPR 152 (345)
T ss_pred ccccccCCchhHHHHHHHHHH-HHhCCCC
Confidence 23222 2 256899888888 8887654
No 43
>PHA03049 IMV membrane protein; Provisional
Probab=27.05 E-value=1.2e+02 Score=16.70 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 038222 38 QLPPGPR 44 (150)
Q Consensus 38 ~~~pgp~ 44 (150)
..+|.|.
T Consensus 31 ~~~p~~e 37 (68)
T PHA03049 31 QNPPSQE 37 (68)
T ss_pred CCCCChh
Confidence 3344433
No 44
>PHA01327 hypothetical protein
Probab=26.89 E-value=15 Score=18.03 Aligned_cols=17 Identities=6% Similarity=0.175 Sum_probs=12.5
Q ss_pred eecCCCcchHHHHHHhH
Q 038222 113 AWMPVSRPWKNIRKICN 129 (150)
Q Consensus 113 ~~~~~g~~w~~~Rk~~~ 129 (150)
+....|++|++.|.-+.
T Consensus 14 vinehge~wqer~drmk 30 (49)
T PHA01327 14 VINEHGEEWQERKDRMK 30 (49)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55667999998776554
No 45
>PF15206 FAM209: FAM209 family
Probab=25.52 E-value=50 Score=21.12 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=8.1
Q ss_pred CCCCCCCCCCccc
Q 038222 37 KQLPPGPRPYPVI 49 (150)
Q Consensus 37 ~~~~pgp~~~p~~ 49 (150)
...|||.++.++-
T Consensus 65 eq~p~glrg~~fr 77 (150)
T PF15206_consen 65 EQSPPGLRGCSFR 77 (150)
T ss_pred ccCCCccCcccCC
Confidence 3457777766654
No 46
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=23.16 E-value=1.7e+02 Score=18.81 Aligned_cols=7 Identities=0% Similarity=0.117 Sum_probs=3.0
Q ss_pred CCChhhH
Q 038222 8 TVDPDCF 14 (150)
Q Consensus 8 ~~~~~~~ 14 (150)
.+++..+
T Consensus 2 ~~~~~~~ 8 (159)
T PRK13461 2 EINIPTI 8 (159)
T ss_pred CCcHHHH
Confidence 4455433
No 47
>PF09316 Cmyb_C: C-myb, C-terminal; InterPro: IPR015395 This entry represents the C-terminal domain of the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis [].
Probab=21.86 E-value=1.4e+02 Score=19.83 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCceEech-----HHHHHHHHhhCC
Q 038222 60 HKSLLELAKIHGPIMSLKL-----ASMVKTILLDHD 90 (150)
Q Consensus 60 ~~~~~~~~~~yG~v~~~~~-----~~~~~~il~~~~ 90 (150)
-..+.+.-++||++-.+.- .|.++||+..+.
T Consensus 74 KnALA~~ekK~Gplk~lp~tPs~L~EDi~EvikqE~ 109 (167)
T PF09316_consen 74 KNALAAQEKKYGPLKYLPQTPSHLEEDIREVIKQEQ 109 (167)
T ss_pred HHHHHHHHHhcCCCccCCCchHHHHHHHHHHHHhcc
Confidence 4567778899998765432 299999997654
No 48
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.61 E-value=1.3e+02 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHhC-CceEechH---------------HHHHHHHhh
Q 038222 57 DKPHKSLLELAKIHG-PIMSLKLA---------------SMVKTILLD 88 (150)
Q Consensus 57 ~~~~~~~~~~~~~yG-~v~~~~~~---------------~~~~~il~~ 88 (150)
.++.++-.++-++|| +++++++- +.+.++|..
T Consensus 150 edP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA 197 (403)
T COG2069 150 EDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA 197 (403)
T ss_pred hCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh
Confidence 567777788889999 68888763 666777754
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=20.30 E-value=1.4e+02 Score=15.33 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCceEech
Q 038222 60 HKSLLELAKIHGPIMSLKL 78 (150)
Q Consensus 60 ~~~~~~~~~~yG~v~~~~~ 78 (150)
...+.++.++||++..+.+
T Consensus 12 ~~~l~~~f~~~g~i~~~~~ 30 (70)
T PF00076_consen 12 EEELRDFFSQFGKIESIKV 30 (70)
T ss_dssp HHHHHHHHHTTSTEEEEEE
T ss_pred HHHHHHHHHHhhhcccccc
Confidence 4566777888888755543
Done!