BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038224
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNI 136
G F DQF+N AN RAHYE TGPE++E G +DAF R+L+E P++
Sbjct: 135 GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHV 194
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
K ++P S++ + G+ ++ F +G+G + +N ++ LDG
Sbjct: 195 KVIAVEPARSNVLSG-------------GKMGQHGF----QGMGPGFIPENLDLSLLDGV 237
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
+ + +A ++R L + +GLFLG SS A++VA+ LGPG + I D G ++LS
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR+ + G EL G G GA++ + S TG +QFEN N +H TGPE
Sbjct: 90 ERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPE 149
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPN-IKCFLIDPPGSSLFNKVTRGVMYT 159
I +Q ++DAF R L+ N +K ++P S + +
Sbjct: 150 ILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSG-------- 201
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
P +GIG + + + +D D EA EM+R+L K +GL +
Sbjct: 202 ---------GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLV 252
Query: 220 GSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
G SS N A++VAQ LGP +VT+ D R+LS
Sbjct: 253 GISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 289
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR+ + G EL G G GA++ + S TG +QFEN N +H TGPE
Sbjct: 102 ERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPE 161
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPN-IKCFLIDPPGSSLFNKVTRGVMYT 159
I +Q ++DAF R L+ N +K ++P S + +
Sbjct: 162 ILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSG-------- 213
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
P +GIG + + + +D D EA EM+R+L K +GL +
Sbjct: 214 ---------GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLV 264
Query: 220 GSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
G SS N A++VAQ LGP +VT+ D R+LS
Sbjct: 265 GISSGANVAAALKVAQKLGPDARVVTVAPDHAERYLS 301
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 83 QFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLID 142
QF N AN + H+E TGPEIWE T G++D F ++L+ NPN+K + ++
Sbjct: 167 QFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVE 226
Query: 143 PPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDR 202
P S++ N G P G+G + + ++ +
Sbjct: 227 PSESNVLNGGKPG---------------PHHITGNGVGFKPDILDLDV--MEKVLEVSSE 269
Query: 203 EAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHLS 256
+AV M+R L +GL +G SS N V A+R+AQ G IVT+ G R+LS
Sbjct: 270 DAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLS 324
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 83 QFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLID 142
QF N AN + H+E TGPEIWE T G++D F ++L+ NPN+K + ++
Sbjct: 167 QFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVE 226
Query: 143 PPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDR 202
P S++ N G P G+G + + ++ +
Sbjct: 227 PSESNVLNGGKPG---------------PHHITGNGVGFKPDILDLDV--MEKVLEVSSE 269
Query: 203 EAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHLS 256
+AV M+R L +GL +G SS N V A+R+AQ G IVT+ G R+LS
Sbjct: 270 DAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLS 324
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 82 DQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLI 141
DQ+ N +N AHY+ T EI +Q G+LD +R L+E P + +
Sbjct: 178 DQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 237
Query: 142 DPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTI--TEGIGINRLTQNFMMAKLDGAFRG 199
DP GS L AE L T EGIG + + +D F+
Sbjct: 238 DPEGSIL--------------AEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKS 283
Query: 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFY 259
D EA +R L+ +GL G S+ AV+ AQ L G V IL DS +++KF
Sbjct: 284 NDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFL 343
Query: 260 DVHYLSQQG 268
++ Q+G
Sbjct: 344 SDRWMLQKG 352
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 81/189 (42%), Gaps = 16/189 (8%)
Query: 82 DQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLI 141
DQ+ N +N AHY+ T EI +Q G+LD +R L+E P + +
Sbjct: 243 DQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 302
Query: 142 DPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTI--TEGIGINRLTQNFMMAKLDGAFRG 199
DP GS L AE L T EGIG + + +D F+
Sbjct: 303 DPEGSIL--------------AEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKS 348
Query: 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFY 259
D EA +R L+ +GL G S+ AV+ AQ L G V IL DS +++KF
Sbjct: 349 NDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFL 408
Query: 260 DVHYLSQQG 268
++ Q+G
Sbjct: 409 SDRWMLQKG 417
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 19/198 (9%)
Query: 61 GSDGAI-QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
G GAI ++ + + G+ QFEN AN + HYE TGPEIW+ TGG++D F
Sbjct: 122 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 181
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
++L+E N N+K + ++P S++ + P +GI
Sbjct: 182 GTITGAGKYLKEQNANVKLYGVEPVESAILSG-----------------GKPGPHKIQGI 224
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLG 238
G + + +D + + E+++M+R L +GL +G SS A+++AQ
Sbjct: 225 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 284
Query: 239 PGHTIVTILCDSGMRHLS 256
G V I G R+LS
Sbjct: 285 AGKLFVAIFPSFGERYLS 302
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 19/198 (9%)
Query: 61 GSDGAI-QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
G GAI ++ + + G+ QFEN AN + HYE TGPEIW+ TGG++D F
Sbjct: 124 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 183
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
++L+E N N+K + ++P S++ + P +GI
Sbjct: 184 GTITGAGKYLKEQNANVKLYGVEPVESAILSG-----------------GKPGPHKIQGI 226
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLG 238
G + + +D + + E+++M+R L +GL +G SS A+++AQ
Sbjct: 227 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 286
Query: 239 PGHTIVTILCDSGMRHLS 256
G V I G R+LS
Sbjct: 287 AGKLFVAIFPSFGERYLS 304
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 19/198 (9%)
Query: 61 GSDGAI-QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
G GAI ++ + + G+ QFEN AN + HYE TGPEIW+ TGG++D F
Sbjct: 124 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 183
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
++L+E N N+K + ++P S++ + P +GI
Sbjct: 184 GTITGAGKYLKEQNANVKLYGVEPVESAILSG-----------------GKPGPHKIQGI 226
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLG 238
G + + +D + + E+++M+R L +GL +G SS A+++AQ
Sbjct: 227 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 286
Query: 239 PGHTIVTILCDSGMRHLS 256
G V I G R+LS
Sbjct: 287 AGKLFVAIFPSFGERYLS 304
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 20/218 (9%)
Query: 42 KRRRAVDKDGKELEHIN-GYGSDGAIQSSK-FPSDCTGGFFADQFENLANFRAHYEGTGP 99
+RR + G EL + G GA+Q ++ + + QF+N AN + HYE TGP
Sbjct: 212 ERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271
Query: 100 EIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYT 159
EIW+ T G++D F RF++E NP + ++P S + +
Sbjct: 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSG-------- 323
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
P +GIG + +N +D + EA+E ++ L +GL +
Sbjct: 324 ---------GKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
Query: 220 GSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHLS 256
G SS A++VA+ G I + G R+LS
Sbjct: 375 GISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLS 412
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 96/231 (41%), Gaps = 28/231 (12%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR A+ G EL + G +GA + ++ G DQF N N AHY TGPE
Sbjct: 98 ERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPE 157
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTK 160
IW+QTGG + F SRF++E + + + P S +
Sbjct: 158 IWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGI-------- 209
Query: 161 EEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLG 220
RR + L F + +D R+A R L +G+F G
Sbjct: 210 -----RRWPTEY-----------LPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCG 253
Query: 221 SSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK--FYDVHYLSQQGL 269
SS GA+RVA++ P +V I+CD G R+LS F + H+ G+
Sbjct: 254 VSSGGAVAGALRVAKA-NPDAVVVAIICDRGDRYLSTGVFGEEHFSQGAGI 303
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 28/231 (12%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR A+ G EL + G +GA + ++ G DQF N N +AHY TGPE
Sbjct: 98 ERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPE 157
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTK 160
IW+QTGG + F S F++E + + + P S +
Sbjct: 158 IWQQTGGRITHFVSSMGTTGTITGVSEFMREQSKPVTIVGLQPEEGSSIPGI-------- 209
Query: 161 EEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLG 220
RR + L F + +D R+A R L +G+F G
Sbjct: 210 -----RRWPTEY-----------LPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCG 253
Query: 221 SSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK--FYDVHYLSQQGL 269
SS GA+RVA++ P +V I+CD G R+LS F + H+ G+
Sbjct: 254 VSSGGAVAGALRVAKA-NPDAVVVAIICDRGDRYLSTGVFGEEHFSQGAGI 303
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 95/231 (41%), Gaps = 28/231 (12%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR A+ G EL + G +GA + ++ G DQF N N AHY TGPE
Sbjct: 98 ERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPE 157
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTK 160
IW+QTGG + F SRF++E + + + P S +
Sbjct: 158 IWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGI-------- 209
Query: 161 EEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLG 220
RR + L F + +D R+A R L +G+F G
Sbjct: 210 -----RRWPTEY-----------LPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCG 253
Query: 221 SSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK--FYDVHYLSQQGL 269
SS GA+RVA + P +V I+CD G R+LS F + H+ G+
Sbjct: 254 VSSGGAVAGALRVAAA-NPDAVVVAIICDRGDRYLSTGVFGEEHFSQGAGI 303
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 95/237 (40%), Gaps = 40/237 (16%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR A+ G EL + G +GA + S+ G DQF N N AHY TGPE
Sbjct: 98 ERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPE 157
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDP-PGSSLFNKVTRGVMYT 159
IW QT G + F SRFL+E + + P GSS+
Sbjct: 158 IWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIP---------- 207
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFM-----MAKLDGAFRGTDREAVEMSRFLVKN 214
GI R +M + +D +A R L
Sbjct: 208 --------------------GIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMRELAVR 247
Query: 215 DGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK--FYDVHYLSQQGL 269
+G+F G SS GA+RVA++ PG +V I+CD G R+LS F + H+ G+
Sbjct: 248 EGIFCGVSSGGAVAGALRVARAT-PGAIVVAIICDRGDRYLSTGVFGEEHFSQGAGI 303
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 17/221 (7%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSK--FPSDCTGGFFADQFENLANFRAHYEGTG 98
+RR+ + G L G G GAIQ ++ SD QF N AN H + TG
Sbjct: 98 ERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTG 157
Query: 99 PEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQ--ENNPNIKCFLIDPPGSSLFNKVTRGV 156
PEIWE T G++D F +R+++ + ++ ++P S + + G
Sbjct: 158 PEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAG- 216
Query: 157 MYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDG 216
EE + P +GIG + N + +D T+ EA+ +R L++ +G
Sbjct: 217 ----EEIK------PGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEG 266
Query: 217 LFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLS 256
+ G SS A+++ + IV IL SG R+LS
Sbjct: 267 ILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLS 307
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 17/221 (7%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSK--FPSDCTGGFFADQFENLANFRAHYEGTG 98
+RR+ + G L G G GAIQ ++ SD QF N AN H + TG
Sbjct: 98 ERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTG 157
Query: 99 PEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQ--ENNPNIKCFLIDPPGSSLFNKVTRGV 156
PEIWE T G++D F +R+++ + ++ ++P S + + G
Sbjct: 158 PEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAG- 216
Query: 157 MYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDG 216
EE + P +GIG + N + +D T+ EA+ +R L++ +G
Sbjct: 217 ----EEIK------PGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEG 266
Query: 217 LFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLS 256
+ G SS A+++ + IV IL SG R+LS
Sbjct: 267 ILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLS 307
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 18/216 (8%)
Query: 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPE 100
+RR + G EL G G GAI ++ G F QF+N AN H TG E
Sbjct: 102 ERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKE 161
Query: 101 IWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTK 160
I EQ G +LDAF + L+E PNIK + ++P S + +
Sbjct: 162 IVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSG--------- 212
Query: 161 EEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLG 220
P +GIG + + DG T EA +R + +G+ G
Sbjct: 213 --------GKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGG 264
Query: 221 SSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
SS A++VA+ LG G ++ I+ +G R+LS
Sbjct: 265 ISSGAAIHAALKVAKELGKGKKVLAIIPSNGERYLS 300
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 61 GSDGAI-QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
G GA+ + K + ADQF N H E TGPEIWEQT +D F
Sbjct: 150 GMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 209
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
+R L++ + + ++P S + + P +GI
Sbjct: 210 GTLTGVARALKKMGSHARIVAVEPMESPVLSG-----------------GKPGAHKIQGI 252
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGP 239
G + + +D F +A+E + L ++DG+F G S N A+++A+ P
Sbjct: 253 GPGFVPDVLDRSLIDEVFCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAER--P 310
Query: 240 ---GHTIVTILCDSGMRHLS 256
G TIVTI+ G R+LS
Sbjct: 311 EMEGKTIVTIIPSFGERYLS 330
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSKFPSDCTGGFFA-DQFENLANFRAHYEGTGP 99
+RR + G EL G G GAI ++ + +F QFEN AN H T
Sbjct: 104 ERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAE 163
Query: 100 EIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYT 159
E+W T G++D ++ ++E P+ + ++P S + +
Sbjct: 164 EVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSG-------- 215
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
G++ +P I G L Q+ +D + +A+ ++R L + +GL +
Sbjct: 216 -----GQKGPHPIQGIGAGFVPPVLDQDL----VDEIITVGNEDALNVARRLAREEGLLV 266
Query: 220 GSSSAMNCVGAVRVA-QSLGPGHTIVTILCDSGMRHLSK--FYDV 261
G SS V A++VA + G IV +L D G R+LS F DV
Sbjct: 267 GISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 311
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSKFPSDCTGGFFA-DQFENLANFRAHYEGTGP 99
+RR + G EL G G GAI ++ + +F QFEN AN H T
Sbjct: 104 ERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAE 163
Query: 100 EIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYT 159
E+W T G++D ++ ++E P+ + ++P S + +
Sbjct: 164 EVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSG-------- 215
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
G++ +P I G L Q+ +D + +A+ ++R L + +GL +
Sbjct: 216 -----GQKGPHPIQGIGAGFVPPVLDQDL----VDEIITVGNEDALNVARRLAREEGLLV 266
Query: 220 GSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSK--FYDV 261
G SS V A++VA+ G IV +L D G R+LS F DV
Sbjct: 267 GISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 311
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 59 GYGSDGAI-QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXX 117
G GA+ + K + ADQF N H E TGPEIWEQT +D F
Sbjct: 127 ALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVG 186
Query: 118 XXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITE 177
+R L++ + + ++P S + + P +
Sbjct: 187 TGGTLTGVARALKKMGSHARIVAVEPTESPVLSG-----------------GKPGPHKIQ 229
Query: 178 GIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL 237
GIG + + +D +A+E + L ++DG+F G S N A+++A+
Sbjct: 230 GIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAER- 288
Query: 238 GP---GHTIVTILCDSGMRHLS 256
P G TIVT++ G R+LS
Sbjct: 289 -PEMEGKTIVTVIPSFGERYLS 309
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 20/218 (9%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSKFPSDCTGGFF-ADQFENLANFRAHYEGTGP 99
+RR + G EL G G GAI ++ + +F QFEN AN H T
Sbjct: 105 ERRMLLRAYGAELVLTPGAEGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAE 164
Query: 100 EIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYT 159
E+W T G++D F ++ +++ P+ + ++P S + +
Sbjct: 165 EVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSG-------- 216
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
G++ +P +GIG + +A +D + +A+E++R + +GL +
Sbjct: 217 -----GQKGPHPI----QGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEGLLV 267
Query: 220 GSSSAMNCVGAVRVA-QSLGPGHTIVTILCDSGMRHLS 256
G SS A +A + G IV +L D G R+LS
Sbjct: 268 GISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 20/218 (9%)
Query: 42 KRRRAVDKDGKELEHINGY-GSDGAIQSSKFPSDCTGGFF-ADQFENLANFRAHYEGTGP 99
+RR + G EL G G GAI ++ + +F QFEN AN H T
Sbjct: 105 ERRMLLRAYGAELVLTPGAEGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAE 164
Query: 100 EIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYT 159
E+W T G++D F ++ +++ P+ + ++P S + +
Sbjct: 165 EVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEPAASPVLSG-------- 216
Query: 160 KEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFL 219
G++ +P +GIG + +A +D + +A+E++R + +GL
Sbjct: 217 -----GQKGPHPI----QGIGAGFVPPVLDLALVDEVITVGNDDALELARRMATEEGLLF 267
Query: 220 GSSSAMNCVGAVRVA-QSLGPGHTIVTILCDSGMRHLS 256
G SS A +A + G IV +L D G R+LS
Sbjct: 268 GISSGAAVWAARELAHRPENAGKLIVVVLPDFGERYLS 305
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Query: 61 GSDGAIQS-SKFPSDCTGGFF-ADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXX 118
G GAI+ +K + G +F A+QF N N AH+ T EIWE T GE+D
Sbjct: 134 GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHY-TANEIWEDTDGEVDIVVSAVGT 192
Query: 119 XXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEG 178
+ L+E IK ++P S++ EG+ K P +G
Sbjct: 193 SGTVIGVAEKLKEKKKGIKIIAVEPEESAVL--------------EGKA-KGPHGI--QG 235
Query: 179 IGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL- 237
IG + + +D ++A +M+R +VK DG+ G SS + ++ A+
Sbjct: 236 IGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPE 295
Query: 238 GPGHTIVTILCDSGMRHLSKFYDVHYLSQQG 268
G TIV I+ G R+LS D++ + +G
Sbjct: 296 NEGKTIVIIVPSCGERYLST--DLYKIKDEG 324
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Query: 61 GSDGAIQS-SKFPSDCTGGFF-ADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXX 118
G GAI+ +K + G +F A+QF N N AH+ T EIWE T GE+D
Sbjct: 135 GMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHY-TANEIWEDTDGEVDIVVSAVGT 193
Query: 119 XXXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEG 178
+ L+E IK ++P S++ EG+ K P +G
Sbjct: 194 SGTVIGVAEKLKEKKKGIKIIAVEPEESAVL--------------EGKA-KGPHGI--QG 236
Query: 179 IGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL- 237
IG + + +D ++A +M+R +VK DG+ G SS + ++ A+
Sbjct: 237 IGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPE 296
Query: 238 GPGHTIVTILCDSGMRHLSKFYDVHYLSQQG 268
G TIV I+ G R+LS D++ + +G
Sbjct: 297 NEGKTIVIIVPSCGERYLST--DLYKIKDEG 325
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 61 GSDGAIQSSK--FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXX 118
G GAI ++ SD + QFEN AN + H E TGPEIW+ T G++D
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 119 XXXXXXXSRFLQEN-NPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITE 177
SR ++ + I ++P S + ++ G EE + P +
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAG-----EEVK------PGPHKIQ 227
Query: 178 GIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL 237
GIG + +N ++ +D A+ +R L+ +G+ G SS A R+A+
Sbjct: 228 GIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLP 287
Query: 238 G-PGHTIVTILCDSGMRHLS 256
IV IL + R+LS
Sbjct: 288 EFADKLIVVILPSASERYLS 307
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 12/183 (6%)
Query: 82 DQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXXXXXXXXSRFLQENNPNIKCFLI 141
DQ+ N N AHY+GT EI Q ++D R ++E P+ + +
Sbjct: 195 DQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGV 254
Query: 142 DPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTD 201
DP GS L R K + + + EGIG + F +D + D
Sbjct: 255 DPYGSIL----ARPAELNKTDVQFYEV--------EGIGYDFPPTVFDDTVVDVWTKIGD 302
Query: 202 REAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDV 261
+ MSR L +GL G SS A+ A+ L G V IL D +++KF
Sbjct: 303 SDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNYMTKFVSD 362
Query: 262 HYL 264
+++
Sbjct: 363 NWM 365
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 31/189 (16%)
Query: 73 SDCTGGFFADQFENLANFRAHYEGTGPEIWEQT---GGELDAFXXXXXXXXXXXXXSRFL 129
S G +QF N ANF AH GT EI+ Q+ G L + +L
Sbjct: 214 SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYL 273
Query: 130 QENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFM 189
Q +P+I+ L+ P A+G + T + IN L ++
Sbjct: 274 QSVDPSIRAVLVQP-------------------AQGDSIPGIRRVETGMLWINMLDISYT 314
Query: 190 MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTIL 247
+A++ T EA+E + ++DGL +G S + A L PG +V ++
Sbjct: 315 LAEV------TLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV-VV 367
Query: 248 CDSGMRHLS 256
D+G ++LS
Sbjct: 368 PDTGFKYLS 376
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 31/189 (16%)
Query: 73 SDCTGGFFADQFENLANFRAHYEGTGPEIWEQT---GGELDAFXXXXXXXXXXXXXSRFL 129
S G +QF N ANF AH GT EI+ Q+ G L + +L
Sbjct: 214 SKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYL 273
Query: 130 QENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFM 189
Q +P+I+ L+ P A+G + T + IN L ++
Sbjct: 274 QSVDPSIRAVLVQP-------------------AQGDSIPGIRRVETGMLWINMLDISYT 314
Query: 190 MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTIL 247
+A++ T EA+E + ++DGL +G S + A L PG +V ++
Sbjct: 315 LAEV------TLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVV-VV 367
Query: 248 CDSGMRHLS 256
D+G ++LS
Sbjct: 368 PDTGFKYLS 376
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 26/164 (15%)
Query: 61 GSDGAIQSSK-FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
GS+ A+ ++K + Q+ N AN +HY GTGPE+ E+ F
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
RFL+E+ N+K +P + GV + EG + E
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEP-------RYGEGVYALRNMDEG--------FVPELY 233
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSS 223
LT + + +D AV +R LV +G+F G S+
Sbjct: 234 DPEILTARYSVGAVD---------AVRRTRELVHTEGIFAGIST 268
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 26/164 (15%)
Query: 61 GSDGAIQSSK-FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
GS+ A+ ++K + Q+ N AN +HY GTGPE+ E+ F
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
RFL+E+ N+K +P + GV + EG + E
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEP-------RYGEGVYALRNMDEG--------FVPELY 234
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSS 223
LT + + +D AV +R LV +G+F G S+
Sbjct: 235 DPEILTARYSVGAVD---------AVRRTRELVHTEGIFAGIST 269
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 61 GSDGAIQSSK-FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFXXXXXXX 119
GS+ A+ ++K + Q+ N AN +HY GTGPE+ E+ F
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 120 XXXXXXSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
RFL+E+ N+ +P + GV + EG + E
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEP-------RYGEGVYALRNMDEG--------FVPELY 231
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSS 223
LT + + +D AV +R LV +G+F G S+
Sbjct: 232 DPEILTARYSVGAVD---------AVRRTRELVHTEGIFAGIST 266
>pdb|2FQP|A Chain A, Crystal Structure Of A Cupin Domain (Bp2299) From
Bordetella Pertussis Tohama I At 1.80 A Resolution
pdb|2FQP|B Chain B, Crystal Structure Of A Cupin Domain (Bp2299) From
Bordetella Pertussis Tohama I At 1.80 A Resolution
pdb|2FQP|C Chain C, Crystal Structure Of A Cupin Domain (Bp2299) From
Bordetella Pertussis Tohama I At 1.80 A Resolution
pdb|2FQP|D Chain D, Crystal Structure Of A Cupin Domain (Bp2299) From
Bordetella Pertussis Tohama I At 1.80 A Resolution
Length = 97
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 139 FLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDT 174
L++ P S+ +++TRGV YT+ E + NP DT
Sbjct: 50 LLLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSDT 85
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMR 253
TD E + R+L + +G+F +SA G ++ + L P T+V L G++
Sbjct: 267 TDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLK 322
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 190 MAKLDGAFR--GTDREAVEMSRFLVKNDGLFL-GSSSAMNCVGAVRVAQS--LGPGHTIV 244
+A DG + G DR + R+ + DGL + GS + M + +V + LGPG I
Sbjct: 333 LAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIA 392
Query: 245 TIL 247
L
Sbjct: 393 VDL 395
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 190 MAKLDGAFR--GTDREAVEMSRFLVKNDGLFL-GSSSAMNCVGAVRVAQS--LGPGHTIV 244
+A DG + G DR + R+ + DGL + GS + M + +V + LGPG I
Sbjct: 333 LAMTDGRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIA 392
Query: 245 TIL 247
L
Sbjct: 393 VDL 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,944,949
Number of Sequences: 62578
Number of extensions: 307889
Number of successful extensions: 574
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 41
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)