Query 038224
Match_columns 282
No_of_seqs 183 out of 1509
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02356 phosphateglycerate ki 100.0 8.6E-46 1.9E-50 347.2 24.6 241 41-281 140-423 (423)
2 PRK10717 cysteine synthase A; 100.0 2.1E-42 4.5E-47 318.8 21.8 218 42-270 101-327 (330)
3 COG0031 CysK Cysteine synthase 100.0 1.3E-41 2.8E-46 303.7 19.5 197 42-256 99-299 (300)
4 PLN02565 cysteine synthase 100.0 3E-40 6.5E-45 303.0 21.8 207 42-265 104-313 (322)
5 KOG1481 Cysteine synthase [Ami 100.0 5.3E-40 1.2E-44 285.3 17.7 248 1-282 139-391 (391)
6 TIGR01137 cysta_beta cystathio 100.0 9.7E-39 2.1E-43 306.0 20.9 217 42-270 99-321 (454)
7 cd01561 CBS_like CBS_like: Thi 100.0 2.8E-38 6E-43 286.5 21.3 198 42-256 90-291 (291)
8 TIGR01139 cysK cysteine syntha 100.0 2.4E-38 5.2E-43 287.9 20.5 199 42-257 94-295 (298)
9 PLN03013 cysteine synthase 100.0 4.4E-38 9.5E-43 295.4 22.6 207 42-265 212-425 (429)
10 PLN02556 cysteine synthase/L-3 100.0 3.6E-38 7.9E-43 293.5 21.1 210 41-267 147-359 (368)
11 COG1171 IlvA Threonine dehydra 100.0 2.1E-38 4.6E-43 287.8 18.8 205 42-258 111-320 (347)
12 PLN00011 cysteine synthase 100.0 1E-37 2.2E-42 286.7 21.2 208 42-266 106-316 (323)
13 TIGR01136 cysKM cysteine synth 100.0 1.5E-37 3.3E-42 282.8 21.2 199 42-258 95-297 (299)
14 PRK11761 cysM cysteine synthas 100.0 3.6E-37 7.9E-42 279.7 20.6 192 42-259 100-294 (296)
15 cd06448 L-Ser-dehyd Serine deh 100.0 8.7E-37 1.9E-41 279.7 21.5 207 41-258 87-309 (316)
16 PRK12483 threonine dehydratase 100.0 9.1E-37 2E-41 294.0 21.8 203 42-257 122-330 (521)
17 PRK06382 threonine dehydratase 100.0 8.2E-37 1.8E-41 288.7 21.0 214 42-269 110-330 (406)
18 PRK07591 threonine synthase; V 100.0 1.7E-36 3.7E-41 287.4 21.2 208 42-258 174-397 (421)
19 PRK06608 threonine dehydratase 100.0 1.7E-36 3.8E-41 279.8 20.6 213 42-266 109-326 (338)
20 PRK08526 threonine dehydratase 100.0 1.7E-36 3.7E-41 285.6 20.7 203 42-258 105-312 (403)
21 TIGR01138 cysM cysteine syntha 100.0 1.3E-36 2.9E-41 275.4 19.3 190 42-257 96-287 (290)
22 PLN02550 threonine dehydratase 100.0 2.3E-36 4.9E-41 293.3 21.9 202 42-257 194-402 (591)
23 PRK08197 threonine synthase; V 100.0 1.8E-36 3.8E-41 285.4 20.3 208 42-258 164-387 (394)
24 PRK08198 threonine dehydratase 100.0 2.6E-36 5.6E-41 285.4 21.1 214 41-268 106-326 (404)
25 PRK07334 threonine dehydratase 100.0 1.8E-36 4E-41 286.1 19.8 211 42-267 108-324 (403)
26 TIGR01124 ilvA_2Cterm threonin 100.0 4.2E-36 9.1E-41 289.3 21.6 204 42-258 102-311 (499)
27 TIGR01127 ilvA_1Cterm threonin 100.0 3E-36 6.4E-41 282.8 19.6 201 42-257 85-290 (380)
28 TIGR02079 THD1 threonine dehyd 100.0 6.6E-36 1.4E-40 282.4 21.2 203 42-258 101-311 (409)
29 PRK08329 threonine synthase; V 100.0 6E-36 1.3E-40 277.4 20.1 193 42-255 141-347 (347)
30 PRK08638 threonine dehydratase 100.0 1E-35 2.2E-40 274.2 20.5 208 42-265 112-325 (333)
31 PRK09224 threonine dehydratase 100.0 1.2E-35 2.7E-40 286.9 21.6 204 42-258 105-314 (504)
32 PRK08639 threonine dehydratase 100.0 1.2E-35 2.6E-40 281.8 20.6 203 42-258 110-322 (420)
33 PLN02970 serine racemase 100.0 1E-35 2.2E-40 274.0 19.2 205 41-259 111-323 (328)
34 PRK07048 serine/threonine dehy 100.0 2E-35 4.4E-40 271.3 20.3 203 42-258 109-315 (321)
35 PRK02991 D-serine dehydratase; 100.0 2.9E-35 6.3E-40 279.0 21.8 221 41-267 193-437 (441)
36 PRK06815 hypothetical protein; 100.0 1.9E-35 4E-40 271.1 19.9 198 42-253 105-308 (317)
37 TIGR02991 ectoine_eutB ectoine 100.0 2.6E-35 5.6E-40 270.0 19.7 201 42-258 104-311 (317)
38 PRK06110 hypothetical protein; 100.0 4.9E-35 1.1E-39 268.9 21.2 205 43-265 108-317 (322)
39 PRK06260 threonine synthase; V 100.0 3.6E-35 7.7E-40 276.8 20.5 208 41-258 152-374 (397)
40 PLN02569 threonine synthase 100.0 4.1E-35 9E-40 280.8 20.9 207 42-259 225-446 (484)
41 PRK06450 threonine synthase; V 100.0 4E-35 8.8E-40 270.5 19.8 192 42-255 134-338 (338)
42 cd01562 Thr-dehyd Threonine de 100.0 8E-35 1.7E-39 265.1 19.8 198 42-252 102-303 (304)
43 PRK06352 threonine synthase; V 100.0 3.9E-35 8.4E-40 272.3 17.5 202 41-259 112-325 (351)
44 PRK06721 threonine synthase; R 100.0 1.5E-34 3.3E-39 268.5 21.4 211 42-269 113-335 (352)
45 PRK08813 threonine dehydratase 100.0 1.1E-34 2.4E-39 267.5 20.3 200 42-266 118-321 (349)
46 PRK07476 eutB threonine dehydr 100.0 1.1E-34 2.3E-39 266.6 20.1 206 42-265 104-317 (322)
47 PRK08206 diaminopropionate amm 100.0 1.5E-34 3.3E-39 272.3 21.0 208 41-258 152-389 (399)
48 KOG1252 Cystathionine beta-syn 100.0 3.1E-36 6.7E-41 268.5 8.8 215 41-270 140-360 (362)
49 PRK08246 threonine dehydratase 100.0 3.6E-34 7.8E-39 261.8 19.5 199 42-257 105-308 (310)
50 PRK07409 threonine synthase; V 100.0 9.9E-34 2.1E-38 263.3 20.0 201 42-259 116-329 (353)
51 KOG1250 Threonine/serine dehyd 100.0 5.2E-34 1.1E-38 258.2 17.2 200 42-253 151-355 (457)
52 cd01563 Thr-synth_1 Threonine 100.0 1.5E-33 3.3E-38 259.1 19.3 203 42-254 107-324 (324)
53 PRK05638 threonine synthase; V 100.0 2.7E-33 5.8E-38 267.4 20.4 199 41-256 148-360 (442)
54 TIGR02035 D_Ser_am_lyase D-ser 100.0 8.1E-33 1.7E-37 261.4 21.3 210 42-255 189-424 (431)
55 PRK06381 threonine synthase; V 100.0 1.3E-32 2.8E-37 252.5 19.9 199 42-250 100-317 (319)
56 TIGR01747 diampropi_NH3ly diam 100.0 1.7E-32 3.8E-37 256.1 20.9 207 42-259 131-371 (376)
57 TIGR03844 cysteate_syn cysteat 100.0 1.3E-32 2.9E-37 258.5 19.6 209 47-257 159-385 (398)
58 cd06447 D-Ser-dehyd D-Serine d 100.0 2.2E-32 4.8E-37 256.5 20.4 206 42-251 171-400 (404)
59 cd06446 Trp-synth_B Tryptophan 100.0 7.7E-32 1.7E-36 251.5 20.4 215 43-258 124-365 (365)
60 KOG1251 Serine racemase [Signa 100.0 3.8E-32 8.2E-37 232.5 15.3 198 42-252 110-311 (323)
61 TIGR00260 thrC threonine synth 100.0 1E-31 2.3E-36 247.3 18.3 202 42-255 109-327 (328)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 5.2E-31 1.1E-35 247.7 20.6 206 42-258 150-389 (396)
63 TIGR00263 trpB tryptophan synt 100.0 1.5E-30 3.3E-35 244.2 21.6 213 43-258 140-381 (385)
64 cd00640 Trp-synth-beta_II Tryp 100.0 1.5E-30 3.2E-35 230.1 19.3 157 42-250 87-244 (244)
65 PRK13028 tryptophan synthase s 100.0 7.8E-30 1.7E-34 239.2 22.7 217 43-264 152-397 (402)
66 PRK04346 tryptophan synthase s 100.0 6.5E-30 1.4E-34 239.4 21.2 217 43-264 148-393 (397)
67 PLN02618 tryptophan synthase, 100.0 1.8E-29 3.8E-34 237.0 22.3 214 43-259 161-403 (410)
68 TIGR01275 ACC_deam_rel pyridox 100.0 1.4E-30 2.9E-35 238.3 13.0 195 42-253 96-303 (311)
69 TIGR01415 trpB_rel pyridoxal-p 100.0 1.7E-29 3.7E-34 238.6 20.3 219 42-265 158-417 (419)
70 cd06449 ACCD Aminocyclopropane 100.0 3.5E-30 7.6E-35 235.2 12.9 194 42-250 99-307 (307)
71 PRK12391 tryptophan synthase s 100.0 5E-29 1.1E-33 235.8 21.0 220 42-265 167-426 (427)
72 PRK03910 D-cysteine desulfhydr 100.0 5.3E-30 1.1E-34 236.4 13.3 196 42-252 111-320 (331)
73 PRK13802 bifunctional indole-3 100.0 3.8E-29 8.2E-34 246.8 20.0 223 41-266 419-678 (695)
74 PRK12390 1-aminocyclopropane-1 100.0 5.8E-30 1.3E-34 236.6 12.3 194 43-252 115-326 (337)
75 COG0498 ThrC Threonine synthas 100.0 8.5E-29 1.8E-33 231.3 17.9 203 41-258 163-379 (411)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 2.4E-29 5.2E-34 232.5 13.5 196 42-252 113-325 (337)
77 PRK13803 bifunctional phosphor 100.0 3.1E-28 6.8E-33 240.0 21.2 218 43-265 360-606 (610)
78 PF00291 PALP: Pyridoxal-phosp 100.0 2.7E-28 5.9E-33 221.7 13.8 194 42-249 93-306 (306)
79 PRK14045 1-aminocyclopropane-1 99.9 4.3E-26 9.4E-31 210.1 14.2 193 43-252 111-316 (329)
80 PRK09225 threonine synthase; V 99.9 3.1E-21 6.7E-26 184.1 20.2 203 42-259 170-419 (462)
81 cd01560 Thr-synth_2 Threonine 99.9 2.5E-20 5.3E-25 177.9 20.6 205 42-259 171-423 (460)
82 COG2515 Acd 1-aminocyclopropan 99.8 3.5E-20 7.5E-25 164.0 12.0 164 74-252 145-314 (323)
83 COG0133 TrpB Tryptophan syntha 99.8 1.4E-18 3.1E-23 154.4 18.4 216 47-267 149-393 (396)
84 COG1350 Predicted alternative 99.7 1.8E-17 3.9E-22 147.7 13.9 234 3-265 172-427 (432)
85 COG3048 DsdA D-serine dehydrat 99.7 2.2E-16 4.9E-21 139.6 13.8 212 43-258 198-435 (443)
86 KOG1395 Tryptophan synthase be 99.7 2.5E-15 5.5E-20 135.1 15.4 210 46-258 216-454 (477)
87 KOG2616 Pyridoxalphosphate-dep 87.8 1.2 2.5E-05 38.8 5.2 62 197-258 149-210 (266)
88 PF03808 Glyco_tran_WecB: Glyc 81.5 6.8 0.00015 32.6 7.1 66 50-120 47-113 (172)
89 PF13561 adh_short_C2: Enoyl-( 70.4 11 0.00024 32.4 5.7 68 48-119 17-84 (241)
90 PLN02356 phosphateglycerate ki 67.1 12 0.00026 35.9 5.6 37 2-38 144-180 (423)
91 cd06533 Glyco_transf_WecG_TagA 65.5 18 0.00039 30.0 5.8 87 49-141 44-131 (171)
92 cd01455 vWA_F11C1-5a_type Von 63.8 21 0.00045 30.5 5.8 35 218-252 88-123 (191)
93 PRK07476 eutB threonine dehydr 53.4 20 0.00043 32.9 4.3 30 2-35 107-136 (322)
94 PRK10717 cysteine synthase A; 53.1 19 0.00042 33.0 4.2 34 2-35 104-137 (330)
95 PRK08197 threonine synthase; V 52.9 34 0.00074 32.3 6.0 71 2-83 167-237 (394)
96 TIGR02035 D_Ser_am_lyase D-ser 52.3 20 0.00044 34.5 4.3 30 2-35 192-221 (431)
97 cd06447 D-Ser-dehyd D-Serine d 51.9 21 0.00046 34.0 4.4 30 2-35 174-203 (404)
98 PRK07478 short chain dehydroge 51.1 84 0.0018 27.0 7.8 64 50-118 29-93 (254)
99 PRK08638 threonine dehydratase 50.4 23 0.0005 32.7 4.3 30 2-35 115-144 (333)
100 PRK07048 serine/threonine dehy 50.3 24 0.00051 32.3 4.3 30 2-35 112-141 (321)
101 COG0031 CysK Cysteine synthase 48.8 24 0.00051 32.3 3.9 25 192-216 257-281 (300)
102 PRK08862 short chain dehydroge 48.1 1.2E+02 0.0026 26.0 8.2 65 50-118 28-93 (227)
103 PRK15452 putative protease; Pr 48.1 1.7E+02 0.0037 28.3 9.9 86 43-141 15-116 (443)
104 TIGR00696 wecB_tagA_cpsF bacte 48.0 54 0.0012 27.5 5.8 65 49-119 46-111 (177)
105 COG2242 CobL Precorrin-6B meth 47.8 23 0.0005 30.1 3.5 42 96-140 91-133 (187)
106 TIGR02991 ectoine_eutB ectoine 47.7 27 0.00059 31.9 4.3 28 2-33 107-134 (317)
107 TIGR03528 2_3_DAP_am_ly diamin 47.1 28 0.0006 33.1 4.3 30 2-35 153-182 (396)
108 PRK06110 hypothetical protein; 46.4 30 0.00064 31.7 4.3 30 2-35 110-139 (322)
109 PRK02991 D-serine dehydratase; 46.3 29 0.00062 33.6 4.3 30 2-35 197-226 (441)
110 PF00107 ADH_zinc_N: Zinc-bind 46.2 1.3E+02 0.0028 22.8 7.8 81 47-144 10-91 (130)
111 PRK08085 gluconate 5-dehydroge 46.2 1.5E+02 0.0032 25.4 8.6 64 50-118 32-96 (254)
112 PF11775 CobT_C: Cobalamin bio 46.1 2E+02 0.0044 25.1 9.3 55 203-259 99-154 (219)
113 PLN02970 serine racemase 46.0 29 0.00063 31.9 4.2 29 2-34 115-143 (328)
114 cd01562 Thr-dehyd Threonine de 45.8 31 0.00067 31.0 4.3 30 2-35 105-134 (304)
115 PRK06381 threonine synthase; V 45.6 30 0.00065 31.6 4.2 29 2-34 103-131 (319)
116 TIGR01127 ilvA_1Cterm threonin 44.2 33 0.00071 32.1 4.4 30 2-35 88-117 (380)
117 PF02887 PK_C: Pyruvate kinase 44.0 64 0.0014 24.7 5.3 43 98-146 8-50 (117)
118 PRK08526 threonine dehydratase 43.7 34 0.00073 32.6 4.4 30 2-35 108-137 (403)
119 PRK06721 threonine synthase; R 43.6 34 0.00073 31.8 4.3 30 2-35 116-145 (352)
120 PRK05867 short chain dehydroge 43.3 1.5E+02 0.0032 25.4 8.1 64 50-118 32-96 (253)
121 TIGR01139 cysK cysteine syntha 43.0 38 0.00083 30.5 4.5 32 2-35 97-128 (298)
122 cd01563 Thr-synth_1 Threonine 42.9 35 0.00075 31.1 4.2 30 2-35 110-139 (324)
123 PRK08206 diaminopropionate amm 42.9 35 0.00077 32.4 4.4 30 2-35 156-185 (399)
124 TIGR01747 diampropi_NH3ly diam 42.6 36 0.00078 32.1 4.3 30 2-35 134-163 (376)
125 PF00764 Arginosuc_synth: Argi 42.3 2E+02 0.0044 27.3 9.2 115 5-140 19-138 (388)
126 TIGR01138 cysM cysteine syntha 42.0 41 0.00089 30.3 4.5 32 2-35 99-130 (290)
127 KOG1252 Cystathionine beta-syn 41.9 29 0.00064 32.3 3.4 36 2-37 144-180 (362)
128 PF12000 Glyco_trans_4_3: Gkyc 41.7 42 0.00092 28.0 4.1 39 98-142 57-95 (171)
129 PRK08198 threonine dehydratase 41.3 38 0.00082 32.0 4.3 30 2-35 110-139 (404)
130 PRK07591 threonine synthase; V 41.1 38 0.00082 32.4 4.3 70 2-82 177-247 (421)
131 PRK07334 threonine dehydratase 41.0 38 0.00083 32.1 4.3 30 2-35 111-140 (403)
132 PLN02565 cysteine synthase 40.9 43 0.00093 30.8 4.5 32 2-35 107-138 (322)
133 PLN02556 cysteine synthase/L-3 40.7 41 0.00088 31.7 4.3 32 2-35 151-182 (368)
134 COG0540 PyrB Aspartate carbamo 40.6 2.6E+02 0.0056 25.8 9.2 122 3-144 67-193 (316)
135 PRK06352 threonine synthase; V 40.5 40 0.00088 31.3 4.3 30 2-35 116-145 (351)
136 PRK06815 hypothetical protein; 39.8 43 0.00094 30.6 4.3 28 2-33 108-135 (317)
137 PRK08246 threonine dehydratase 39.7 44 0.00094 30.5 4.3 30 2-35 108-137 (310)
138 PLN03013 cysteine synthase 39.7 44 0.00096 32.2 4.5 21 194-214 371-391 (429)
139 PRK06382 threonine dehydratase 39.6 42 0.00091 31.9 4.3 30 2-35 113-142 (406)
140 KOG0360 Chaperonin complex com 39.4 66 0.0014 31.3 5.4 49 7-65 251-299 (545)
141 PRK07409 threonine synthase; V 39.0 43 0.00094 31.1 4.3 28 2-33 119-146 (353)
142 PRK05872 short chain dehydroge 38.1 1.5E+02 0.0033 26.3 7.6 64 50-119 32-96 (296)
143 PRK08813 threonine dehydratase 38.0 47 0.001 31.0 4.3 30 2-35 121-150 (349)
144 cd00640 Trp-synth-beta_II Tryp 37.8 51 0.0011 28.6 4.3 30 2-35 90-119 (244)
145 COG0836 {ManC} Mannose-1-phosp 37.7 97 0.0021 28.7 6.1 68 193-260 50-126 (333)
146 PRK15408 autoinducer 2-binding 37.4 1.9E+02 0.0042 26.5 8.3 43 97-142 199-242 (336)
147 PRK11761 cysM cysteine synthas 37.4 47 0.001 30.1 4.1 15 2-16 103-117 (296)
148 TIGR01136 cysKM cysteine synth 37.0 54 0.0012 29.6 4.5 15 2-16 98-112 (299)
149 PRK08329 threonine synthase; V 37.0 50 0.0011 30.6 4.3 68 2-82 144-211 (347)
150 cd01561 CBS_like CBS_like: Thi 36.7 56 0.0012 29.3 4.5 15 2-16 93-107 (291)
151 PLN00011 cysteine synthase 36.6 55 0.0012 30.0 4.5 15 2-16 109-123 (323)
152 PRK12483 threonine dehydratase 35.8 51 0.0011 32.6 4.3 30 2-35 125-154 (521)
153 COG1171 IlvA Threonine dehydra 35.7 77 0.0017 29.7 5.2 31 2-36 114-144 (347)
154 cd06448 L-Ser-dehyd Serine deh 35.4 49 0.0011 30.3 3.9 15 2-16 91-105 (316)
155 TIGR00260 thrC threonine synth 35.2 51 0.0011 30.1 4.1 30 2-35 112-141 (328)
156 PRK08340 glucose-1-dehydrogena 35.1 1.9E+02 0.0041 24.9 7.5 64 50-118 23-86 (259)
157 PRK05638 threonine synthase; V 35.0 54 0.0012 31.5 4.3 30 2-35 152-181 (442)
158 PRK08703 short chain dehydroge 34.5 95 0.0021 26.3 5.4 67 50-118 29-97 (239)
159 PRK09224 threonine dehydratase 34.3 56 0.0012 32.1 4.3 30 2-35 108-137 (504)
160 PRK03692 putative UDP-N-acetyl 34.2 94 0.002 27.5 5.4 62 49-119 103-168 (243)
161 COG1611 Predicted Rossmann fol 33.9 98 0.0021 26.6 5.3 49 94-145 32-80 (205)
162 TIGR01124 ilvA_2Cterm threonin 33.9 55 0.0012 32.2 4.2 30 2-35 105-134 (499)
163 KOG1251 Serine racemase [Signa 33.4 59 0.0013 29.1 3.8 30 3-36 114-143 (323)
164 PF13433 Peripla_BP_5: Peripla 33.2 41 0.0009 31.6 3.1 82 46-133 128-213 (363)
165 PRK04346 tryptophan synthase s 33.1 59 0.0013 31.0 4.1 15 3-17 151-165 (397)
166 COG1920 Predicted nucleotidylt 32.8 82 0.0018 27.0 4.5 62 55-122 66-127 (210)
167 TIGR00730 conserved hypothetic 32.4 1E+02 0.0022 25.8 5.1 48 95-145 18-66 (178)
168 PRK07791 short chain dehydroge 32.1 2.4E+02 0.0052 24.9 7.8 24 95-119 80-103 (286)
169 COG2242 CobL Precorrin-6B meth 32.1 3.2E+02 0.0069 23.2 8.2 134 103-251 28-164 (187)
170 PRK06202 hypothetical protein; 31.8 66 0.0014 27.7 4.0 39 109-147 62-100 (232)
171 COG0800 Eda 2-keto-3-deoxy-6-p 31.6 1.1E+02 0.0023 26.6 5.1 55 42-102 76-130 (211)
172 PRK09701 D-allose transporter 31.5 3.7E+02 0.0081 23.9 11.2 45 97-144 206-252 (311)
173 PRK07024 short chain dehydroge 31.4 2.8E+02 0.0061 23.7 8.0 64 50-118 25-88 (257)
174 COG2379 GckA Putative glycerat 31.3 1.3E+02 0.0029 28.6 6.0 32 226-257 95-129 (422)
175 PRK07035 short chain dehydroge 31.2 1.4E+02 0.0029 25.5 5.9 64 50-118 31-95 (252)
176 PLN02618 tryptophan synthase, 31.2 63 0.0014 30.9 4.0 14 3-16 164-177 (410)
177 PRK06260 threonine synthase; V 31.1 67 0.0014 30.4 4.2 30 2-35 156-185 (397)
178 KOG1200 Mitochondrial/plastidi 30.8 1.3E+02 0.0028 26.2 5.4 65 48-117 35-99 (256)
179 PRK07097 gluconate 5-dehydroge 30.4 1.6E+02 0.0034 25.5 6.2 65 50-119 33-98 (265)
180 PRK08643 acetoin reductase; Va 30.0 1.6E+02 0.0036 25.1 6.3 65 50-119 25-90 (256)
181 PLN02550 threonine dehydratase 30.0 71 0.0015 32.1 4.3 30 2-35 197-226 (591)
182 PLN02569 threonine synthase 29.9 74 0.0016 31.2 4.3 30 2-35 228-257 (484)
183 PRK08213 gluconate 5-dehydroge 29.7 3.5E+02 0.0077 23.0 8.5 64 50-118 35-99 (259)
184 PRK06720 hypothetical protein; 29.5 1.7E+02 0.0038 23.9 6.0 64 50-118 39-103 (169)
185 cd03334 Fab1_TCP TCP-1 like do 29.2 1.7E+02 0.0038 25.9 6.3 42 27-68 106-147 (261)
186 COG1804 CaiB Predicted acyl-Co 28.9 1.4E+02 0.0031 28.4 5.9 97 1-116 26-125 (396)
187 PRK06079 enoyl-(acyl carrier p 28.7 3.2E+02 0.0069 23.4 7.9 63 50-119 32-94 (252)
188 PRK06935 2-deoxy-D-gluconate 3 28.3 3.3E+02 0.0071 23.3 7.9 63 50-118 38-101 (258)
189 PRK07523 gluconate 5-dehydroge 28.0 3.3E+02 0.0072 23.2 7.8 65 50-119 33-98 (255)
190 PRK07814 short chain dehydroge 27.8 1.9E+02 0.004 25.0 6.3 64 50-118 33-97 (263)
191 PRK06138 short chain dehydroge 27.8 3E+02 0.0066 23.2 7.5 65 50-119 28-92 (252)
192 PRK07774 short chain dehydroge 27.7 2E+02 0.0043 24.4 6.3 65 50-119 29-94 (250)
193 PRK13028 tryptophan synthase s 27.6 81 0.0018 30.1 4.1 15 2-16 154-168 (402)
194 PRK02255 putrescine carbamoylt 27.6 1.7E+02 0.0036 27.3 6.0 25 3-27 173-197 (338)
195 COG1797 CobB Cobyrinic acid a, 27.3 1.2E+02 0.0027 29.3 5.1 48 95-143 101-148 (451)
196 PRK07666 fabG 3-ketoacyl-(acyl 27.2 1.8E+02 0.0039 24.5 6.0 65 50-119 30-95 (239)
197 TIGR02415 23BDH acetoin reduct 27.0 1.9E+02 0.0042 24.5 6.1 65 49-118 22-87 (254)
198 cd01825 SGNH_hydrolase_peri1 S 26.9 2.6E+02 0.0057 22.4 6.7 37 108-144 56-105 (189)
199 PF00185 OTCace: Aspartate/orn 26.9 1.6E+02 0.0035 24.0 5.2 51 3-68 22-74 (158)
200 PRK07063 short chain dehydroge 26.8 1.6E+02 0.0035 25.2 5.7 64 50-118 30-96 (260)
201 KOG3083 Prohibitin [Posttransl 26.5 3.5E+02 0.0076 23.9 7.3 69 37-118 196-264 (271)
202 PF11760 CbiG_N: Cobalamin syn 26.4 2.6E+02 0.0056 20.5 5.6 40 108-147 11-50 (84)
203 COG4221 Short-chain alcohol de 26.3 4.6E+02 0.01 23.3 8.2 61 50-118 29-91 (246)
204 PLN02253 xanthoxin dehydrogena 26.3 3.4E+02 0.0074 23.5 7.7 64 50-119 41-105 (280)
205 PRK08589 short chain dehydroge 26.0 1.8E+02 0.0038 25.4 5.8 64 50-119 29-93 (272)
206 PRK12743 oxidoreductase; Provi 25.9 2E+02 0.0044 24.6 6.1 65 50-119 25-91 (256)
207 TIGR01137 cysta_beta cystathio 25.6 1E+02 0.0022 29.5 4.5 15 2-16 102-116 (454)
208 COG0826 Collagenase and relate 25.5 5.6E+02 0.012 23.9 9.1 84 43-139 18-117 (347)
209 cd06313 PBP1_ABC_sugar_binding 25.5 3.7E+02 0.0081 23.1 7.8 44 98-144 174-218 (272)
210 PRK07062 short chain dehydroge 25.5 1.5E+02 0.0033 25.5 5.3 65 50-119 31-98 (265)
211 PRK06200 2,3-dihydroxy-2,3-dih 25.2 4E+02 0.0087 22.8 7.9 62 50-118 29-90 (263)
212 PRK10669 putative cation:proto 25.1 5.4E+02 0.012 25.4 9.5 78 48-142 437-515 (558)
213 PRK12939 short chain dehydroge 25.0 2.4E+02 0.0051 23.8 6.3 65 50-119 30-95 (250)
214 PRK06197 short chain dehydroge 25.0 1.5E+02 0.0033 26.3 5.3 65 50-119 39-106 (306)
215 PRK12481 2-deoxy-D-gluconate 3 25.0 4.4E+02 0.0095 22.5 9.2 61 50-118 31-93 (251)
216 COG1926 Predicted phosphoribos 24.9 75 0.0016 27.6 3.0 80 111-211 127-211 (220)
217 PRK05854 short chain dehydroge 24.7 1.3E+02 0.0029 27.0 4.9 65 50-119 37-104 (313)
218 PRK08265 short chain dehydroge 24.6 3.8E+02 0.0083 23.0 7.7 62 50-118 29-90 (261)
219 TIGR00263 trpB tryptophan synt 24.6 1E+02 0.0022 29.1 4.2 15 2-16 142-156 (385)
220 PRK02102 ornithine carbamoyltr 24.6 2E+02 0.0043 26.7 6.0 31 3-33 175-205 (331)
221 PRK07231 fabG 3-ketoacyl-(acyl 24.3 3.9E+02 0.0084 22.4 7.5 64 50-118 28-91 (251)
222 PRK06172 short chain dehydroge 24.2 2.5E+02 0.0053 23.9 6.3 64 50-118 30-94 (253)
223 PRK07677 short chain dehydroge 24.0 2.3E+02 0.005 24.1 6.1 64 50-118 24-88 (252)
224 PRK09242 tropinone reductase; 24.0 2.1E+02 0.0045 24.5 5.8 64 50-118 32-98 (257)
225 PRK13018 cell division protein 23.7 6.3E+02 0.014 23.9 10.2 90 49-145 52-154 (378)
226 KOG2862 Alanine-glyoxylate ami 23.7 2.5E+02 0.0055 26.1 6.2 43 49-91 113-158 (385)
227 cd06273 PBP1_GntR_like_1 This 23.7 1.8E+02 0.0038 24.8 5.3 34 108-143 178-215 (268)
228 TIGR03206 benzo_BadH 2-hydroxy 23.5 2.6E+02 0.0056 23.6 6.3 64 50-118 26-90 (250)
229 cd06324 PBP1_ABC_sugar_binding 23.3 4.3E+02 0.0093 23.3 7.9 45 97-144 192-240 (305)
230 PRK06932 glycerate dehydrogena 23.3 1.2E+02 0.0026 27.7 4.3 77 48-131 167-249 (314)
231 PRK12938 acetyacetyl-CoA reduc 23.1 2.6E+02 0.0057 23.6 6.2 23 96-119 70-92 (246)
232 PRK08217 fabG 3-ketoacyl-(acyl 23.0 2.7E+02 0.0059 23.4 6.3 64 50-118 28-92 (253)
233 TIGR01274 ACC_deam 1-aminocycl 23.0 1.3E+02 0.0029 27.6 4.5 15 2-16 116-130 (337)
234 PF00291 PALP: Pyridoxal-phosp 23.0 1.3E+02 0.0029 26.6 4.5 30 2-35 96-125 (306)
235 PRK04284 ornithine carbamoyltr 22.9 2.3E+02 0.005 26.3 6.0 27 3-29 175-201 (332)
236 PRK06057 short chain dehydroge 22.8 4.7E+02 0.01 22.2 7.9 60 50-118 30-89 (255)
237 PRK05876 short chain dehydroge 22.8 2.6E+02 0.0057 24.5 6.3 64 50-118 29-93 (275)
238 COG0062 Uncharacterized conser 22.7 2.2E+02 0.0048 24.5 5.4 20 236-255 43-63 (203)
239 PRK05866 short chain dehydroge 22.6 2.4E+02 0.0052 25.1 6.0 65 50-119 63-128 (293)
240 PRK12390 1-aminocyclopropane-1 22.4 1.3E+02 0.0029 27.5 4.5 14 3-16 118-131 (337)
241 PRK08277 D-mannonate oxidoredu 22.4 2.6E+02 0.0057 24.2 6.2 64 50-118 33-97 (278)
242 PRK08769 DNA polymerase III su 22.3 1.2E+02 0.0027 27.9 4.1 46 226-272 129-189 (319)
243 PRK06194 hypothetical protein; 22.3 2.7E+02 0.0059 24.2 6.3 65 50-119 29-94 (287)
244 PRK06124 gluconate 5-dehydroge 22.3 2.7E+02 0.0059 23.7 6.2 65 50-119 34-99 (256)
245 TIGR00725 conserved hypothetic 22.1 2.1E+02 0.0045 23.4 5.1 49 94-145 16-64 (159)
246 PRK07074 short chain dehydroge 22.1 4.9E+02 0.011 22.1 7.8 64 50-119 25-88 (257)
247 PRK07576 short chain dehydroge 21.9 5.2E+02 0.011 22.2 8.3 64 50-118 32-96 (264)
248 PRK12826 3-ketoacyl-(acyl-carr 21.9 3E+02 0.0065 23.1 6.3 66 50-120 29-95 (251)
249 cd06284 PBP1_LacI_like_6 Ligan 21.8 2E+02 0.0044 24.3 5.3 33 108-142 176-212 (267)
250 TIGR02469 CbiT precorrin-6Y C5 21.7 2.3E+02 0.005 20.8 5.0 42 101-146 11-54 (124)
251 PRK12935 acetoacetyl-CoA reduc 21.7 3E+02 0.0065 23.2 6.3 64 50-118 29-94 (247)
252 PRK07326 short chain dehydroge 21.6 4.7E+02 0.01 21.8 7.5 65 50-119 29-93 (237)
253 PRK07454 short chain dehydroge 21.5 3E+02 0.0066 23.1 6.3 65 50-119 29-94 (241)
254 cd06449 ACCD Aminocyclopropane 21.5 1.3E+02 0.0028 27.2 4.1 15 2-16 102-116 (307)
255 cd00561 CobA_CobO_BtuR ATP:cor 21.4 1.2E+02 0.0027 24.9 3.5 34 111-144 6-39 (159)
256 PRK09219 xanthine phosphoribos 21.2 2E+02 0.0044 24.2 5.0 64 76-144 17-82 (189)
257 COG2048 HdrB Heterodisulfide r 21.1 1.4E+02 0.0031 27.2 4.1 50 2-58 176-229 (293)
258 PF13649 Methyltransf_25: Meth 21.0 93 0.002 22.6 2.6 33 114-147 4-36 (101)
259 PRK05398 formyl-coenzyme A tra 21.0 1E+02 0.0022 29.4 3.4 43 98-143 79-124 (416)
260 PRK05565 fabG 3-ketoacyl-(acyl 21.0 4.9E+02 0.011 21.6 8.3 65 50-119 28-94 (247)
261 PRK07832 short chain dehydroge 21.0 1.9E+02 0.0041 25.1 5.0 65 50-119 23-89 (272)
262 COG1597 LCB5 Sphingosine kinas 20.7 3E+02 0.0066 24.9 6.3 75 39-123 21-98 (301)
263 PRK14805 ornithine carbamoyltr 20.5 2.7E+02 0.0059 25.4 6.0 43 3-59 166-208 (302)
264 PLN03028 pyrophosphate--fructo 20.5 2.5E+02 0.0055 28.4 6.1 43 97-141 164-208 (610)
265 PRK12745 3-ketoacyl-(acyl-carr 20.5 2.8E+02 0.006 23.5 5.9 65 50-119 25-91 (256)
266 PRK03525 crotonobetainyl-CoA:c 20.4 1.9E+02 0.0042 27.5 5.1 14 3-16 32-45 (405)
267 PRK06947 glucose-1-dehydrogena 20.3 2.8E+02 0.0061 23.4 5.8 22 97-119 70-91 (248)
268 PRK12384 sorbitol-6-phosphate 20.3 2.2E+02 0.0048 24.3 5.2 65 50-119 25-92 (259)
269 PRK06090 DNA polymerase III su 20.1 1.6E+02 0.0035 27.2 4.4 43 227-270 125-182 (319)
270 TIGR03316 ygeW probable carbam 20.1 2.8E+02 0.0062 26.0 6.1 29 3-31 196-224 (357)
No 1
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=8.6e-46 Score=347.17 Aligned_cols=241 Identities=80% Similarity=1.249 Sum_probs=202.0
Q ss_pred HHhHHHHHhcCCeEEEeCC-------Ch--------hHHHHHhccCcc--------------------c--------CCC
Q 038224 41 SKRRRAVDKDGKELEHING-------YG--------SDGAIQSSKFPS--------------------D--------CTG 77 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g-------~~--------~~a~~~a~~~~~--------------------~--------~~~ 77 (282)
.+|+++|+.|||+|+.+++ ++ +++.+.+.+..+ + .++
T Consensus 140 ~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (423)
T PLN02356 140 IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTG 219 (423)
T ss_pred HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCC
Confidence 3688999999999999964 23 334444444322 0 147
Q ss_pred cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhcccc
Q 038224 78 GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVM 157 (282)
Q Consensus 78 ~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~ 157 (282)
++|++||+||.++..|+.+||+||++|++++||+||+|+|+|||++|++++||+++|+++|++|||.+++++..+..+..
T Consensus 220 ~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~ 299 (423)
T PLN02356 220 GFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVM 299 (423)
T ss_pred cEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchh
Confidence 89999999999988888888999999998789999999999999999999999999999999999999875543211110
Q ss_pred chhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc
Q 038224 158 YTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL 237 (282)
Q Consensus 158 ~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~ 237 (282)
+......|+++..+.+|+++|++.+.++..+....+|+++.|+|+|+++++++|++++|+++|||||++++|++++++++
T Consensus 300 ~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~ 379 (423)
T PLN02356 300 YTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL 379 (423)
T ss_pred hhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh
Confidence 00011234444445589999999988888888888999999999999999999999999999999999999999998777
Q ss_pred CCCCEEEEEecCCCcchhhhhcChhHHhhCCCCCCCCcccccCC
Q 038224 238 GPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTPAAAGLEFLGI 281 (282)
Q Consensus 238 ~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~~~~~~~~~~~~ 281 (282)
+++++||+|+||+|.||++++|+++|+.++++.+.+.++|||||
T Consensus 380 ~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~~~~~~~~~~~~~~ 423 (423)
T PLN02356 380 GPGHTIVTILCDSGMRHLSKFHDPQYLSQHGLTPTATGLEFLGI 423 (423)
T ss_pred CCCCeEEEEECCCCcchhhhhcCHHHHHhcCCCCCcccchhccC
Confidence 67899999999999999999999999999999999999999997
No 2
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.1e-42 Score=318.79 Aligned_cols=218 Identities=45% Similarity=0.715 Sum_probs=187.2
Q ss_pred HhHHHHHhcCCeEEEeCCC-hhH---H----HHHhccCcccC-CCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEE
Q 038224 42 KRRRAVDKDGKELEHINGY-GSD---G----AIQSSKFPSDC-TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAF 112 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~-~~~---a----~~~a~~~~~~~-~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~i 112 (282)
.|+++|+.|||+|+.++++ |++ . .+.+.++..+. .+++|++||+||.++.+||+++++||++|++++||+|
T Consensus 101 ~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~i 180 (330)
T PRK10717 101 EKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGF 180 (330)
T ss_pred HHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEE
Confidence 4788999999999999986 543 2 33333332221 4789999999999988889999999999998779999
Q ss_pred EEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhc
Q 038224 113 VAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAK 192 (282)
Q Consensus 113 vvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~ 192 (282)
|+|+|+||+++|++++|++++|+++||+|||.+++++.+++.|. .+ ....++++|++++.++..+....
T Consensus 181 v~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~----------~~-~~~~~~~~gl~~~~~~~~~~~~~ 249 (330)
T PRK10717 181 VCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGE----------LK-AEGSSITEGIGQGRITANLEGAP 249 (330)
T ss_pred EEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCC----------cC-CCCCcccCcCCCCcCCcccChhh
Confidence 99999999999999999999999999999999998776654432 11 24568899999887766666667
Q ss_pred CCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcChhHHhhCCCC
Q 038224 193 LDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLT 270 (282)
Q Consensus 193 ~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~ 270 (282)
+++++.|+|+|++++++.|++++|+++|||||+++++++++++++.++++||+|+||+|.||++++|+|+|+.++++.
T Consensus 250 ~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~~~ 327 (330)
T PRK10717 250 IDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARELGPGHTIVTILCDSGERYQSKLFNPDFLREKGLP 327 (330)
T ss_pred CCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhcCCCCEEEEEECCCchhhcccccCHHHHHhcCCC
Confidence 899999999999999999999999999999999999999998777678899999999999999999999999999874
No 3
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=303.68 Aligned_cols=197 Identities=42% Similarity=0.663 Sum_probs=183.1
Q ss_pred HhHHHHHhcCCeEEEeCC--C-hhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecC
Q 038224 42 KRRRAVDKDGKELEHING--Y-GSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG 117 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g--~-~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG 117 (282)
||+++|++|||+|+++++ . +..+.+.+.+++++.++ +++++||+||.|+..||.+||.||++|+++.||+||+++|
T Consensus 99 er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvG 178 (300)
T COG0031 99 ERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVG 178 (300)
T ss_pred HHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCC
Confidence 688999999999999986 3 78899999988877666 7888899999999999999999999999988999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEE
Q 038224 118 TGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAF 197 (282)
Q Consensus 118 ~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~ 197 (282)
||||++|++++||+.+|++++++|||.+|+++.. | . .++.++||+.+++|.++....+|+++
T Consensus 179 TGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~---G----------~-----g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 179 TGGTITGVARYLKERNPNVRIVAVDPEGSVLLSG---G----------E-----GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred cchhHHHHHHHHHhhCCCcEEEEECCCCCcccCC---C----------C-----CCcccCCCCCCcCCcccccccCceEE
Confidence 9999999999999999999999999999987653 1 1 47889999999999888888999999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhh
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~ 256 (282)
.|+|+++++.+|.|+++||+++++|||++++|+++++++++++++||+|+||+|.||++
T Consensus 241 ~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPAGKTIVTILPDSGERYLS 299 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECCCcccccC
Confidence 99999999999999999999999999999999999999988899999999999999987
No 4
>PLN02565 cysteine synthase
Probab=100.00 E-value=3e-40 Score=302.97 Aligned_cols=207 Identities=32% Similarity=0.519 Sum_probs=181.5
Q ss_pred HhHHHHHhcCCeEEEeCC--ChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHING--YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g--~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|+++|+.|||+|+.++. +++++.+.|.+++++.+++++++||+||.|+..||+|+|+||++|++++||+||+|+|+|
T Consensus 104 ~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~G 183 (322)
T PLN02565 104 ERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTG 183 (322)
T ss_pred HHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCch
Confidence 688999999999999997 458889999998776557899999999999888899999999999987899999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEc
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRG 199 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V 199 (282)
|+++|++++||+++|++|||+|||.+|+.+.. | . +..+.++|++.+.++..+....+|+++.|
T Consensus 184 G~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~---g----------~----~~~~~~~glg~~~~~~~~~~~~vd~~v~V 246 (322)
T PLN02565 184 GTITGAGKYLKEQNPDIKLYGVEPVESAVLSG---G----------K----PGPHKIQGIGAGFIPGVLDVDLLDEVVQV 246 (322)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCCccccC---C----------C----CCCccCCCCCCCCCCCcCCHhHCCEEEEE
Confidence 99999999999999999999999999974422 1 2 22446688888766665556788999999
Q ss_pred CHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-CCCCEEEEEecCCCcchhhhhcChhHHh
Q 038224 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 200 ~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-~~~~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
+|++++++++.|++++|+++|||||++++++++++++. .++++||+|+||+|.||+++++.+.|+.
T Consensus 247 ~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~ 313 (322)
T PLN02565 247 SSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKK 313 (322)
T ss_pred CHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHH
Confidence 99999999999999999999999999999999998764 4578999999999999999988777763
No 5
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-40 Score=285.27 Aligned_cols=248 Identities=58% Similarity=0.955 Sum_probs=226.3
Q ss_pred ChHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCccc-CCCcE
Q 038224 1 SQILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSD-CTGGF 79 (282)
Q Consensus 1 ~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~-~~~~~ 79 (282)
||+||.+||+|++|+|.++.+|.++++.+++.+.+... +. .-..+
T Consensus 139 ~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~----------------------------------~~ngi~g~ 184 (391)
T KOG1481|consen 139 SDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPN----------------------------------ASNGIRGW 184 (391)
T ss_pred HHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhccc----------------------------------ccCCcccc
Confidence 58999999999999999999999999999997766432 11 01247
Q ss_pred ecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCC-cEEEEEcCCCCchhhhhhccccc
Q 038224 80 FADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPN-IKCFLIDPPGSSLFNKVTRGVMY 158 (282)
Q Consensus 80 ~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~-~~iigVe~~~~~~~~~~~~g~~~ 158 (282)
|.+||+|+.||..||.+||+|||.|..+.+|++++.+|+|||++|+++++|+..+. ++++-.+|.++.+++.+..|..|
T Consensus 185 fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy 264 (391)
T KOG1481|consen 185 FADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMY 264 (391)
T ss_pred hhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhh
Confidence 88999999999999999999999999999999999999999999999999998876 88999999999999988888888
Q ss_pred hhhhhcCccccCCCCccccccCCCCCcHhhH--hhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh
Q 038224 159 TKEEAEGRRLKNPFDTITEGIGINRLTQNFM--MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS 236 (282)
Q Consensus 159 ~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~--~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~ 236 (282)
...+.+|++.....+|+.+|||..++..++. ...+|+.+.|+|++++...+.|...+|+|++.|||.+..|+.++++.
T Consensus 265 ~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~ 344 (391)
T KOG1481|consen 265 DHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKT 344 (391)
T ss_pred hhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHh
Confidence 8778889888888999999999998877766 56699999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEecCCCcchhhhhcChhHHhhCCCCC-CCCcccccCCC
Q 038224 237 LGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLTP-AAAGLEFLGIK 282 (282)
Q Consensus 237 ~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~~-~~~~~~~~~~~ 282 (282)
++++.+||+|+||+|.++++++|+..+|...++.| ..-.++|++++
T Consensus 345 LgpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~p~~~~~l~~~~~~ 391 (391)
T KOG1481|consen 345 LGPGHTIVTILCDSGSRHLSKLFSESFLESKKLSPVIEPQLKFYIVL 391 (391)
T ss_pred cCCCceEEEEEeCCcchHHHHhcCHHHHhhcCCCcccchhhheeeeC
Confidence 99999999999999999999999999999999987 78889998875
No 6
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=9.7e-39 Score=305.99 Aligned_cols=217 Identities=32% Similarity=0.488 Sum_probs=183.8
Q ss_pred HhHHHHHhcCCeEEEeCCC--hhHH---HHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEec
Q 038224 42 KRRRAVDKDGKELEHINGY--GSDG---AIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAA 116 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~--~~~a---~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpv 116 (282)
+|+++|+.|||+|+.++++ ++++ .+.+.++.++.++++|++||+||.++.+||.++|+||++|++++||+||+|+
T Consensus 99 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~v 178 (454)
T TIGR01137 99 EKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGA 178 (454)
T ss_pred HHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEec
Confidence 4788999999999999986 5543 4556666554346889999999999877899999999999987899999999
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeE
Q 038224 117 GTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196 (282)
Q Consensus 117 G~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~ 196 (282)
|+|||++|++.+|++.+|.++|++|||.++++...... . ......+.++|++.+..+..+....+|++
T Consensus 179 G~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~-----------~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~ 246 (454)
T TIGR01137 179 GTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENL-----------N-KTGRTPYKVEGIGYDFIPTVLDRKVVDEW 246 (454)
T ss_pred CchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcc-----------c-CCCCCCccCCCCCCCCCCCcCCchhCCeE
Confidence 99999999999999999999999999999874422100 0 00112467888887655555667788999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHH-hcCCCCEEEEEecCCCcchhhhhcChhHHhhCCCC
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGLT 270 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~-~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~~ 270 (282)
+.|+|++++++++.|++++|+++|||||++++|++++++ .++++++||+++||+|.||++++|+++|+.++++.
T Consensus 247 ~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~~ 321 (454)
T TIGR01137 247 IKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGFL 321 (454)
T ss_pred EEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCCc
Confidence 999999999999999999999999999999999999987 57778999999999999999999999999999885
No 7
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.8e-38 Score=286.54 Aligned_cols=198 Identities=42% Similarity=0.668 Sum_probs=175.9
Q ss_pred HhHHHHHhcCCeEEEeCCCh----hHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecC
Q 038224 42 KRRRAVDKDGKELEHINGYG----SDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG 117 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~----~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG 117 (282)
.|+.+|+.|||+|+.+++++ +++.+.+.+++++.++++|++||+||.+++||++++++||++|+++.||+||+|+|
T Consensus 90 ~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G 169 (291)
T cd01561 90 EKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVG 169 (291)
T ss_pred HHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 57789999999999999988 88999998887664489999999999999997669999999999878999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEE
Q 038224 118 TGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAF 197 (282)
Q Consensus 118 ~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~ 197 (282)
+||+++|++.+|+++.|.++||+|||.+++.+... ....++++||+.+..+..+....++.++
T Consensus 170 ~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~-----------------~~~~~~~~gi~~~~~~~~~~~~~~~~~~ 232 (291)
T cd01561 170 TGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGG-----------------PPGPHKIEGIGAGFIPENLDRSLIDEVV 232 (291)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCC-----------------CCCCCcCCCCCCCCCCCccCchhCceeE
Confidence 99999999999999999999999999999855210 1235678899887656666667889999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhh
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~ 256 (282)
.|+|+|++++++.|++++|+++||+||++++++++++++.+++++||+|+||+|.||++
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 233 RVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGKTIVTILPDSGERYLS 291 (291)
T ss_pred EECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhcCCCCeEEEEECCCccccCC
Confidence 99999999999999999999999999999999999987766788999999999999975
No 8
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.4e-38 Score=287.87 Aligned_cols=199 Identities=35% Similarity=0.555 Sum_probs=172.9
Q ss_pred HhHHHHHhcCCeEEEeCCCh--hHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 42 KRRRAVDKDGKELEHINGYG--SDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~--~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|+++|+.|||+|+++++++ +++.+.+.+++++.++ |++++||+||.++..||+++++||++|+++.||+||+|+|+
T Consensus 94 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~ 173 (298)
T TIGR01139 94 ERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGT 173 (298)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecch
Confidence 36788999999999999997 5788888888766332 67999999999888789999999999998779999999999
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEE
Q 038224 119 GGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFR 198 (282)
Q Consensus 119 GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~ 198 (282)
||+++|++.+|++++|++|||+|||.+++++...+ ...+.++|++.+..+..+....+|+++.
T Consensus 174 Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~-----------------~~~~~~~gl~~~~~~~~~~~~~~d~~~~ 236 (298)
T TIGR01139 174 GGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGK-----------------PGPHKIQGIGAGFIPKNLNRSVIDEVIT 236 (298)
T ss_pred hHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCC-----------------CCCCCCCCCCCCCCCCccChhhCCEEEE
Confidence 99999999999999999999999999997543311 1234567787665555566667899999
Q ss_pred cCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh
Q 038224 199 GTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 199 V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
|+|+|++++++.|++++|+++||+||+++++++++.+++.++++||+|+||+|.||+++
T Consensus 237 V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~~~~~~vv~v~~d~G~ky~~~ 295 (298)
T TIGR01139 237 VSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPEPDKLIVVILPSTGERYLST 295 (298)
T ss_pred ECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhcCCCCEEEEEECCCCccccCc
Confidence 99999999999999999999999999999999999887767889999999999999986
No 9
>PLN03013 cysteine synthase
Probab=100.00 E-value=4.4e-38 Score=295.36 Aligned_cols=207 Identities=29% Similarity=0.499 Sum_probs=180.9
Q ss_pred HhHHHHHhcCCeEEEeCCC--hhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHINGY--GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~--~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
+|+++|+.|||+|+++++. ++++.+.|.+++++.++++|++||+||.|+..||+++|+||++|++++||+||+|+|+|
T Consensus 212 ~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtG 291 (429)
T PLN03013 212 ERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTG 291 (429)
T ss_pred HHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 6889999999999999987 56888899988776557899999999999988899999999999987899999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEc
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRG 199 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V 199 (282)
|+++|++++||+.+|+++||+|||.+++.+.. | . +..+.++|++.+.+|..+....+|+++.|
T Consensus 292 GtisGiar~lKe~~P~vkVigVep~gs~~l~~---g----------~----~~~~~i~Glg~~~ip~~~~~~~vD~vv~V 354 (429)
T PLN03013 292 GTITGVGRFIKEKNPKTQVIGVEPTESDILSG---G----------K----PGPHKIQGIGAGFIPKNLDQKIMDEVIAI 354 (429)
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEeCCCchhhC---C----------C----CCCcccCcccCCcCCHhHHHHhccEEEEE
Confidence 99999999999999999999999999975421 1 1 23456789998887888888889999999
Q ss_pred CHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcC-CCCE-EEEEecCCCcchhhhh--cCh-hHHh
Q 038224 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHT-IVTILCDSGMRHLSKF--YDV-HYLS 265 (282)
Q Consensus 200 ~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~-~~~~-Vv~v~tGgg~ky~~~~--~~~-~w~~ 265 (282)
+|+|++++++.|++++|+++||+||++++|+++++++.. .+++ |++++++++.+|+++. |++ .|+.
T Consensus 355 sD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~~~~~~~~~~~ 425 (429)
T PLN03013 355 SSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRCSSLSGKRWRK 425 (429)
T ss_pred CHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhhhcCCCcchhh
Confidence 999999999999999999999999999999999987643 4555 4788889999999994 655 6875
No 10
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3.6e-38 Score=293.50 Aligned_cols=210 Identities=32% Similarity=0.498 Sum_probs=177.9
Q ss_pred HHhHHHHHhcCCeEEEeCCCh--hHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 41 SKRRRAVDKDGKELEHINGYG--SDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~--~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.+|+.+|+.|||+|++++... ...++.+.+++++.++++|++||+||.++..||.++|+||++|+.+.||+||+|+||
T Consensus 147 ~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGt 226 (368)
T PLN02556 147 LERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGS 226 (368)
T ss_pred HHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCc
Confidence 468999999999999998533 256666666665556789999999999998789999999999987689999999999
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEE
Q 038224 119 GGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFR 198 (282)
Q Consensus 119 GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~ 198 (282)
|||++|++++||+++|+++||+|||.+++.+.. ++ +..+.+.|++.+.++..+....+|+++.
T Consensus 227 GGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~-------------g~----~~~~~i~g~g~~~~p~~~~~~~~d~~v~ 289 (368)
T PLN02556 227 GGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNG-------------GK----PGPHHITGNGVGFKPDILDMDVMEKVLE 289 (368)
T ss_pred chHHHHHHHHHHHhCCCCEEEEEeeCCCccccC-------------CC----CCCeeeeeccCCCCccccchhhCCeEEE
Confidence 999999999999999999999999999864321 11 1223457777766666666778999999
Q ss_pred cCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-CCCCEEEEEecCCCcchhhhhcChhHHhhC
Q 038224 199 GTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFYDVHYLSQQ 267 (282)
Q Consensus 199 V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~ 267 (282)
|+|+|++++++.|++++|+++||+||++++++++++++. .++++||+|+||+|.||+++++.++|+.+-
T Consensus 290 Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~ 359 (368)
T PLN02556 290 VSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEA 359 (368)
T ss_pred ECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHH
Confidence 999999999999999999999999999998988887663 357899999999999999999889998753
No 11
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=287.80 Aligned_cols=205 Identities=19% Similarity=0.269 Sum_probs=182.3
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++++.|||+|++++.+|||+.++|.+++++ +++.|++|||+|+.++| |.|++.||++|++..||+||||+|+||+
T Consensus 111 ~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~-~G~~~i~pfD~p~viAG-QGTi~lEileq~~~~~d~v~vpvGGGGL 188 (347)
T COG1171 111 IKVDATRGYGAEVILHGDNFDDAYAAAEELAEE-EGLTFVPPFDDPDVIAG-QGTIALEILEQLPDLPDAVFVPVGGGGL 188 (347)
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHH-cCCEEeCCCCCcceeec-ccHHHHHHHHhccccCCEEEEecCccHH
Confidence 588999999999999999999999999999877 79999999999999988 7999999999999557999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccC-CCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKN-PFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~-~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++.++|.+.|+++||||||++++ ++.+++.|. .++.. ...++++|+++..+ ++.+.+.+.|++
T Consensus 189 isGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~---------~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~ 259 (347)
T COG1171 189 ISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGK---------IVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDI 259 (347)
T ss_pred HHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCC---------ceeecCCCCccccccccCCCCHHHHHHHHHcCCcE
Confidence 99999999999999999999999999 778887762 22222 37899999998655 667889999999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
+.|+|+++.++|+.+++++++++||+||+++||+++...+..++++|++|+||+|. ++..+
T Consensus 260 v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~ilSGgN~-d~~~~ 320 (347)
T COG1171 260 VLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSGGNI-DFERL 320 (347)
T ss_pred EEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhhcCCCeEEEEecCCCC-CHHHH
Confidence 99999999999999999999999999999999999987653357779999999865 44443
No 12
>PLN00011 cysteine synthase
Probab=100.00 E-value=1e-37 Score=286.65 Aligned_cols=208 Identities=33% Similarity=0.519 Sum_probs=178.8
Q ss_pred HhHHHHHhcCCeEEEeCCChh--HHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHINGYGS--DGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~--~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|+++|+.|||+|++++++++ +.++.+.+++++.++++|++||+||.++..||.++++||++|++++||+||+|+|+|
T Consensus 106 ~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtG 185 (323)
T PLN00011 106 ERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTG 185 (323)
T ss_pred HHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCch
Confidence 478899999999999998764 446677777665457899999999998888899999999999977899999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEc
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRG 199 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V 199 (282)
||++|++++||+++|+++||+|||.+++.+.. ++ +..++++|++.+.++..+....+|+++.|
T Consensus 186 Gt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~-------------~~----~~~~~~~gl~~~~~~~~~~~~~~d~~v~V 248 (323)
T PLN00011 186 GTATGVGKFLKEKNKDIKVCVVEPVESAVLSG-------------GQ----PGPHLIQGIGSGIIPFNLDLTIVDEIIQV 248 (323)
T ss_pred HHHHHHHHHHHhhCCCCEEEEEecCCCcccCC-------------CC----CCCCCCCCCCCCCCCcccChhhCCeEEEE
Confidence 99999999999999999999999999874422 11 23457888888766666666778999999
Q ss_pred CHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-CCCCEEEEEecCCCcchhhhhcChhHHhh
Q 038224 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFYDVHYLSQ 266 (282)
Q Consensus 200 ~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~ 266 (282)
+|+++++++++|++++|+++||+||++++++++++++. .++++||+|+||+|+||+++.+.+.|+.+
T Consensus 249 ~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~ 316 (323)
T PLN00011 249 TGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYE 316 (323)
T ss_pred CHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHh
Confidence 99999999999999999999999999999999988653 35789999999999999999666789886
No 13
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.5e-37 Score=282.77 Aligned_cols=199 Identities=36% Similarity=0.563 Sum_probs=171.4
Q ss_pred HhHHHHHhcCCeEEEeCCC--hhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHINGY--GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~--~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|+++|+.|||+|+.++++ ++++.+.+.+++++.++|++++||+||.++..||+++++||++|++++||+||+|+|+|
T Consensus 95 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~G 174 (299)
T TIGR01136 95 ERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTG 174 (299)
T ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchh
Confidence 4788999999999999998 58999999988766447899999999998777899999999999987799999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEE
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFR 198 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~ 198 (282)
|+++|++.+|++++|.+|||+|||.+++ +..+ + +......+++.+..++.+....+|+++.
T Consensus 175 g~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~-~-----------------~~~~~~~~i~~~~~~~~~~~~~~d~~~~ 236 (299)
T TIGR01136 175 GTITGVGRYLKEQNPNIKIVAVEPAESPVLSGG-E-----------------PGPHKIQGIGAGFIPKILDLSLIDEVIT 236 (299)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCCccccCC-C-----------------CCCccCCCCCCCCCCccCChhhCCEEEE
Confidence 9999999999999999999999999987 3332 1 1112344566555555566677899999
Q ss_pred cCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-CCCCEEEEEecCCCcchhhhh
Q 038224 199 GTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 199 V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
|+|+|++++++.|++++|+++||+||+++++++++.++. .++++||+|+||+|.||++++
T Consensus 237 V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~ 297 (299)
T TIGR01136 237 VSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTG 297 (299)
T ss_pred ECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCcc
Confidence 999999999999999999999999999999999998763 348899999999999999874
No 14
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3.6e-37 Score=279.75 Aligned_cols=192 Identities=34% Similarity=0.523 Sum_probs=165.6
Q ss_pred HhHHHHHhcCCeEEEeCC--ChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHING--YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g--~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
+|+++|+.|||+|+.+++ +++++.+.+.++.++ .+++|++||+|+.++.+||+++++||++|+++++|+||+|+|+|
T Consensus 100 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~G 178 (296)
T PRK11761 100 ERRAAMRAYGAELILVPKEQGMEGARDLALQMQAE-GEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTT 178 (296)
T ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhc-cCCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcH
Confidence 588999999999999997 899999999888766 57899999999999999999999999999987799999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEc
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRG 199 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V 199 (282)
|+++|++++||+++|.++||+|||.+++....+ .++.....+..+....+|+++.|
T Consensus 179 g~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~------------------------~~~~~~~~~~~~~~~~vd~~v~V 234 (296)
T PRK11761 179 GTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGI------------------------RRWPEEYLPKIFDASRVDRVLDV 234 (296)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCC------------------------CCCCCCcCCcccChhhCCEEEEE
Confidence 999999999999999999999999987632211 01111112233445678899999
Q ss_pred CHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh-hc
Q 038224 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK-FY 259 (282)
Q Consensus 200 ~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~-~~ 259 (282)
+|+|++++++.|++++|+++|||||++++++++++++. ++++||+|+||+|.||+++ .|
T Consensus 235 ~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~~-~~~~vV~v~~d~g~ky~~~~~~ 294 (296)
T PRK11761 235 SQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN-PNAVIVAIICDRGDRYLSTGVF 294 (296)
T ss_pred CHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHHC-CCCeEEEEECCCCcccCChhcc
Confidence 99999999999999999999999999999999988764 5789999999999999998 54
No 15
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=8.7e-37 Score=279.65 Aligned_cols=207 Identities=14% Similarity=0.255 Sum_probs=175.0
Q ss_pred HHhHHHHHhcCCeEEEeCCC-hhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC--CCCEEEEecC
Q 038224 41 SKRRRAVDKDGKELEHINGY-GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG--ELDAFVAAAG 117 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~-~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~--~pd~ivvpvG 117 (282)
..|+.+|+.|||+|+.++++ ++++.+.+.+++++.++++|++||+||.+++|| +++++||++|+++ .||+||+|+|
T Consensus 87 ~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~-~t~~~Ei~~q~~~~~~~D~vv~~vG 165 (316)
T cd06448 87 PRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGH-SSMVDEIAQQLQSQEKVDAIVCSVG 165 (316)
T ss_pred HHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccc-cHHHHHHHHHccccCCCCEEEEEeC
Confidence 35788999999999999999 888888888876653378999999999999985 8999999999986 5999999999
Q ss_pred hhHHHHHHHHHHHhcC-CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCcH---hhHhh
Q 038224 118 TGGTVAGVSRFLQENN-PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLTQ---NFMMA 191 (282)
Q Consensus 118 ~GG~~aGi~~g~k~~~-~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~~---~~~~~ 191 (282)
+||+++|++++|++++ |+++||+|||.+|+ +..+++.|. +.. ...+|+++|++.+.++. .....
T Consensus 166 ~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~----------~~~~~~~~t~a~glg~~~~~~~~~~~~~~ 235 (316)
T cd06448 166 GGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGK----------LVTLPKITSVATSLGAKTVSSQALEYAQE 235 (316)
T ss_pred chHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCC----------cEecCCCCchhhccCCCCcCHHHHHHHHh
Confidence 9999999999999996 99999999999997 666666542 211 13468999998876643 33356
Q ss_pred cCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHH-----H--hcCCCCEEEEEecCCCcchhhhh
Q 038224 192 KLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVA-----Q--SLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 192 ~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~-----~--~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
..|+++.|+|+|+++++++|++++||++|||||++++|+++.. + .+.++++||+|+||+|..+.+++
T Consensus 236 ~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~ 309 (316)
T cd06448 236 HNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQL 309 (316)
T ss_pred cCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHH
Confidence 6889999999999999999999999999999999999998532 1 35688999999999988777766
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=9.1e-37 Score=294.05 Aligned_cols=203 Identities=20% Similarity=0.318 Sum_probs=176.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|++++++|+++.++|.+++++ ++++|++||+||.+++| ++|+|+||++|+++.||+||+|+|+||+
T Consensus 122 ~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e-~g~~~v~pfdd~~viaG-qgTig~EI~eQ~~~~~D~VvvpvGgGGl 199 (521)
T PRK12483 122 LKVDGVRAHGGEVVLHGESFPDALAHALKLAEE-EGLTFVPPFDDPDVIAG-QGTVAMEILRQHPGPLDAIFVPVGGGGL 199 (521)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh-cCCeeeCCCCChHHHHH-HHHHHHHHHHHhCCCCCEEEEecCccHH
Confidence 578999999999999999999999999999776 58999999999999998 6999999999998779999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++.++|++.|+++||||||.+++ +..+++.| +++. ....|+++|+++..+ ++.+...++|++
T Consensus 200 iaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g----------~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~v 269 (521)
T PRK12483 200 IAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAG----------ERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEV 269 (521)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcC----------CcccCCCCCceeceeccCCCCHHHHHHHHHhCCEE
Confidence 99999999999999999999999998 55666554 3322 235789999987654 344557889999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcC-CCCEEEEEecCCCcchhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~-~~~~Vv~v~tGgg~ky~~~ 257 (282)
+.|+|+|+.++++.|++++|+++||+||+++||++++.++.. ++++||+|+||+|. +.+.
T Consensus 270 v~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNi-d~~~ 330 (521)
T PRK12483 270 VTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANV-NFDR 330 (521)
T ss_pred EEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC-CHHH
Confidence 999999999999999999999999999999999999875532 57899999999865 4444
No 17
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=8.2e-37 Score=288.65 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=182.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++|+++.+.|.+++++ ++++|++||+||.+++| ++|+|+||++|++ .||+||+|+|+||+
T Consensus 110 ~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~-~~~~~v~~~~~~~~i~g-~~t~~~Ei~eq~~-~~d~vvvpvG~GG~ 186 (406)
T PRK06382 110 QKVNAVEAYGAHVILTGRDYDEAHRYADKIAMD-ENRTFIEAFNDRWVISG-QGTIGLEIMEDLP-DLDQIIVPVGGGGL 186 (406)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCCEecCccCChHHHHH-HHHHHHHHHHhcC-CCCEEEEeeChHHH
Confidence 578889999999999999999999999999776 57899999999999987 7999999999998 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++++||++.|++|||||||.+++ +..++..| +++. ...+|+++|++++.+ +..+..+++|++
T Consensus 187 ~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~----------~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~ 256 (406)
T PRK06382 187 ISGIALAAKHINPNVKIIGIESELSDSMKASLREG----------KIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDI 256 (406)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcC----------CceecCCCCCccccccCCCccHHHHHHHHHcCCEE
Confidence 99999999999999999999999998 55666544 2222 235789999988654 334557889999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCc--chhhhhcChhHHhhCCC
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGM--RHLSKFYDVHYLSQQGL 269 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~--ky~~~~~~~~w~~~~~~ 269 (282)
+.|+|+|++++++.|++++|+++||+||+++|+++.... ..++++||+|+|||+. .+++++++.+|+.++.+
T Consensus 257 v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~-~~~~~~Vv~i~sGGn~d~~~~~~~~~~~~~~~~~~ 330 (406)
T PRK06382 257 VTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV-DVKGKKVAIVVSGGNINPLLMSKIIYKELENLGQL 330 (406)
T ss_pred EEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc-cCCCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 999999999999999999999999999999998865322 2357799999999763 36777787889888776
No 18
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.7e-36 Score=287.44 Aligned_cols=208 Identities=17% Similarity=0.205 Sum_probs=178.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCC-CCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGE-LDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~-pd~ivvpvG~GG 120 (282)
.|+.+|+.|||+|+.++|+|+++.+.+.+++++.++++|++++.||+.++| ++|+++||++|++++ ||+||+|+|+||
T Consensus 174 ~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG-~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg 252 (421)
T PRK07591 174 GKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEG-SKTLGYEVAEQLGWRLPDQVVAPLASGS 252 (421)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccc-hHHHHHHHHHHcCCCCCCEEEEeCCchH
Confidence 688999999999999999999999999998776447889999889999998 799999999999875 999999999999
Q ss_pred HHHHHHHHHHhc-------CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc-----Hh
Q 038224 121 TVAGVSRFLQEN-------NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT-----QN 187 (282)
Q Consensus 121 ~~aGi~~g~k~~-------~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~-----~~ 187 (282)
+++|++++|+++ .+.+|||+|||++++ ++.+++.|... ......+|+++++.++.+. ..
T Consensus 253 ~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~--------~~~~~~~tia~~l~~~~p~~~~~~~~ 324 (421)
T PRK07591 253 LLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDV--------VKPVKPNTIAKSLAIGNPADGPYALD 324 (421)
T ss_pred HHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCc--------ccCCCCCchhhheecCCCCCcHHHHH
Confidence 999999999997 578999999999975 77777765321 0111257889998765432 23
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhh
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
..+++.+.++.|+|+|++++++.|++++||++||+||+++|+++++.++ +.++++||+++||+|+||.+.+
T Consensus 325 ~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 325 IARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 3466788999999999999999999999999999999999999999874 6788999999999999999876
No 19
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-36 Score=279.78 Aligned_cols=213 Identities=18% Similarity=0.236 Sum_probs=179.1
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
+|+++|+.|||+|+.++. ++++.+.+.+ .++ +++||++||+||.++++ ++++++||++|++++||+||+|+|+||+
T Consensus 109 ~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~g-~~t~a~Ei~~q~~~~~D~vv~~vG~GGt 184 (338)
T PRK06608 109 VKQQAALYYGGEVILTNT-RQEAEEKAKE-DEE-QGFYYIHPSDSDSTIAG-AGTLCYEALQQLGFSPDAIFASCGGGGL 184 (338)
T ss_pred HHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHh-CCCEEcCCCCCHHHhcc-HHHHHHHHHHhcCCCcCEEEEeechhHH
Confidence 478899999999999975 5888888877 443 67899999999999987 7999999999998789999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH-hhH-hhcCCeEEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ-NFM-MAKLDGAFR 198 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~-~~~-~~~~d~~~~ 198 (282)
++|++.++|+..|.++||+|||.+++ ++.+++.|... .+.....++++|++++.+.. .+. ...+|+++.
T Consensus 185 ~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~--------~~~~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~ 256 (338)
T PRK06608 185 ISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIY--------RLNYSPNTIADGLKTLSVSARTFEYLKKLDDFYL 256 (338)
T ss_pred HHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeE--------eCCCCCCCeecccCCCCCCHHHHHHHHhCCCEEE
Confidence 99999999999999999999999998 66666655311 01123468899998765432 222 234789999
Q ss_pred cCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCC--cchhhhhcChhHHhh
Q 038224 199 GTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSG--MRHLSKFYDVHYLSQ 266 (282)
Q Consensus 199 V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg--~ky~~~~~~~~w~~~ 266 (282)
|+|+|++++++.|++++|+++|||||++++|++++.++..++++||+|+|||+ .+|++++++++||..
T Consensus 257 Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tgg~~d~~~~~~~~~~~~~~~ 326 (338)
T PRK06608 257 VEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSGGNIDPILYNELWKEDYLTI 326 (338)
T ss_pred ECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCCCccCHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999998766667889999999988 888888888899853
No 20
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-36 Score=285.55 Aligned_cols=203 Identities=16% Similarity=0.271 Sum_probs=173.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++|+++.+.|.+++++ ++++|++||+||.++.| |+|+|+||++|++ .||+||+|+|+||+
T Consensus 105 ~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~-~g~~~v~p~~~~~~i~G-~gtia~EI~eq~~-~~D~vvvpvGgGGl 181 (403)
T PRK08526 105 LKVSGTKALGAEVILKGDNYDEAYAFALEYAKE-NNLTFIHPFEDEEVMAG-QGTIALEMLDEIS-DLDMVVVPVGGGGL 181 (403)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHh-cCCEeeCCCCCHHHHhh-hHHHHHHHHHhcC-CCCEEEEecChHHH
Confidence 578889999999999999999999999998766 67999999999998876 7999999999998 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC-cH--hhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL-TQ--NFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~-~~--~~~~~~~d~~ 196 (282)
++|++.+||+++|+++||||||++++ +..+++.|. ++. ...+|+++|+++..+ +. ......+|++
T Consensus 182 ~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~----------~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~ 251 (403)
T PRK08526 182 ISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKK----------IINSKSVRTIADGIAVRDASPINLAIILECVDDF 251 (403)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCC----------cccCCCCCceeccccCCCCCHHHHHHHHHhCCEE
Confidence 99999999999999999999999998 556665542 221 245789999987643 22 3335789999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
+.|+|+|+.+|++.|++++|+++||+||+++|++++....+.++++||+|+||| +.+.+.+
T Consensus 252 v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsGG-nid~~~~ 312 (403)
T PRK08526 252 VQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSGG-NIDVQML 312 (403)
T ss_pred EEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECCC-CCCHHHH
Confidence 999999999999999999999999999999999986443455688999999996 5566554
No 21
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1.3e-36 Score=275.37 Aligned_cols=190 Identities=34% Similarity=0.509 Sum_probs=162.7
Q ss_pred HhHHHHHhcCCeEEEeCC--ChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHING--YGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g--~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|+++|+.|||+|+.+++ +++++.+.+.+++++ .+.+|++||+|+.++.+||.++++||++|++++||+||+|+|+|
T Consensus 96 ~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~G 174 (290)
T TIGR01138 96 ERKAAMRAYGAELILVTKEEGMEGARDLALELANR-GEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTT 174 (290)
T ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh-CCCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCch
Confidence 477899999999999997 488898888888766 44568899999999999999999999999987899999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEc
Q 038224 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRG 199 (282)
Q Consensus 120 G~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V 199 (282)
|+++|++++||+++|++|||+|||.+++..... .++.+++. +..+....+|+++.|
T Consensus 175 g~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~--------------------~~~~~~~~----~~~~~~~~~d~~v~V 230 (290)
T TIGR01138 175 GTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGI--------------------RRWPTEYL----PGIFDASLVDRVLDI 230 (290)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCC--------------------CCCCCCcC----CcccChhhCcEEEEE
Confidence 999999999999999999999999987532110 11122222 222335568899999
Q ss_pred CHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh
Q 038224 200 TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 200 ~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
+|+|++++++.|++++|+++|||||+++++++++++++ ++++||+|+||+|.||+++
T Consensus 231 ~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 231 HQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAREL-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred CHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHHC-CCCeEEEEECCCCccccCc
Confidence 99999999999999999999999999999999988776 5789999999999999997
No 22
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.3e-36 Score=293.25 Aligned_cols=202 Identities=17% Similarity=0.317 Sum_probs=176.8
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++++.|||+|++++++|+++.+.|.+++++ ++++|++||+||.++.| +.|+|+||++|+++.+|+||+|+|+||+
T Consensus 194 ~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e-~g~~fi~pfddp~viaG-qgTig~EI~eQl~~~~D~VvvpVGgGGL 271 (591)
T PLN02550 194 IKWQSVERLGATVVLVGDSYDEAQAYAKQRALE-EGRTFIPPFDHPDVIAG-QGTVGMEIVRQHQGPLHAIFVPVGGGGL 271 (591)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHh-cCCEEECCCCChHHHHH-HHHHHHHHHHHcCCCCCEEEEEeChhHH
Confidence 578899999999999999999999999998766 67899999999999988 6999999999998669999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++.++|+++|++|||||||.+++ +..+++.| +++. ....++++|+++..+ +..+..+++|++
T Consensus 272 iaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G----------~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~v 341 (591)
T PLN02550 272 IAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHG----------ERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGV 341 (591)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcC----------CccccCCCCCccceeecCCCCHHHHHHHHhhCCEE
Confidence 99999999999999999999999998 56677655 3322 235789999987654 234457899999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
+.|+|+++.+|++.+++++|+++||+||+++||++++.++ + ++++||+|+||+|. +.++
T Consensus 342 V~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~-~g~~Vv~vlsGgNi-d~~~ 402 (591)
T PLN02550 342 VLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGL-KDENVVAITSGANM-NFDR 402 (591)
T ss_pred EEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCC-CCCeEEEEecCCCC-CHHH
Confidence 9999999999999999999999999999999999998764 4 67899999999875 4444
No 23
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.8e-36 Score=285.43 Aligned_cols=208 Identities=18% Similarity=0.212 Sum_probs=177.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCC-CCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGE-LDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~-pd~ivvpvG~GG 120 (282)
.|+++|+.|||+|+.++++++++.+.+.+.+++ +++++++++.||++++| ++|+++||++|++++ ||+||+|+|+||
T Consensus 164 ~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~-~g~~~~~~~~np~~ieG-~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg 241 (394)
T PRK08197 164 ITRLECALAGAELYLVDGLISDAGKIVAEAVAE-YGWFDVSTLKEPYRIEG-KKTMGLELAEQLGWRLPDVILYPTGGGV 241 (394)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCcccccCCCCccchhc-HHHHHHHHHHHcCCCCCCEEEEeCCChH
Confidence 578899999999999999999999999888766 57999999999999998 599999999999864 999999999999
Q ss_pred HHHHHHHHHHhc-------CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc-H-h-h-
Q 038224 121 TVAGVSRFLQEN-------NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT-Q-N-F- 188 (282)
Q Consensus 121 ~~aGi~~g~k~~-------~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~-~-~-~- 188 (282)
+++|++++|+++ .+.++|++|||.+|+ +..+++.|.... .++ ...+|+++|+.++.+. . . +
T Consensus 242 ~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~------~~~-~~~~tia~gl~~~~~~~~~~~~~ 314 (394)
T PRK08197 242 GLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEES------EFW-EDAHTVAFGIRVPKALGDFLVLD 314 (394)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCcc------ccC-CCCCceehhhhCCCCCCHHHHHH
Confidence 999999999986 378999999999996 777776553210 111 1356788888766542 1 1 1
Q ss_pred -HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhh
Q 038224 189 -MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 189 -~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
.+++.+.++.|+|+|+++++++|++++||++||+||++++|++++.++ +.++++||+++||+|.||.+++
T Consensus 315 ~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~ 387 (394)
T PRK08197 315 AVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDTV 387 (394)
T ss_pred HHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhhh
Confidence 246778999999999999999999999999999999999999999875 6678899999999999999876
No 24
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-36 Score=285.35 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=179.3
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhH
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG 120 (282)
..|+.+|+.|||+|++++++|+++.+.+.+++++ ++++|++||+||.+++| |+|+|+||++|++ ++|+||+|+|+||
T Consensus 106 ~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~g-~~t~a~EI~~q~~-~~d~vv~~vG~GG 182 (404)
T PRK08198 106 LSKVKATRSYGAEVVLHGDVYDEALAKAQELAEE-TGATFVHPFDDPDVIAG-QGTIGLEILEDLP-DVDTVVVPIGGGG 182 (404)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHh-cCCEecCCCCCccHHHH-HHHHHHHHHHhCC-CCCEEEEEeCHhH
Confidence 3688999999999999999999999999998776 58999999999999987 6999999999998 7999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCe
Q 038224 121 TVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDG 195 (282)
Q Consensus 121 ~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~ 195 (282)
+++|++.+||+++|+++||||||.+++ +..+++.| ++.. ...+++++|+++..+ +..+....+|+
T Consensus 183 ~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g----------~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~ 252 (404)
T PRK08198 183 LISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAG----------RPVELESVDTIADGIAVKRPGDLTFEIIRELVDD 252 (404)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcC----------CCEecCCCCccccccccCCcCHHHHHHHHHhCCE
Confidence 999999999999999999999999998 56666554 2221 245788999986543 33445788999
Q ss_pred EEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCc--chhhhhcChhHHhhCC
Q 038224 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGM--RHLSKFYDVHYLSQQG 268 (282)
Q Consensus 196 ~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~--ky~~~~~~~~w~~~~~ 268 (282)
++.|+|+|+.++++.|++++|+++|||||+++||++++. .+.++++||+|+|||+. ..+..++..++..++.
T Consensus 253 ~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~-~~~~~~~vv~vl~ggn~~~~~l~~ii~~gl~~~gr 326 (404)
T PRK08198 253 VVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGK-LDVKGKKVVAVLSGGNIDVLLLSRVIERGLVAAGR 326 (404)
T ss_pred EEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhch-hhcCCCeEEEEECCCCCCHHHHHHHHHhhhhhcCC
Confidence 999999999999999999999999999999999999876 34578999999999764 3333344444444433
No 25
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-36 Score=286.10 Aligned_cols=211 Identities=15% Similarity=0.222 Sum_probs=178.8
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++++++.+.+.+++++ ++++|++||+||.+++| |+++++||++|++ .||+||+|+|+|||
T Consensus 108 ~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~g-~~t~~~Ei~~q~~-~~d~vv~~vG~GG~ 184 (403)
T PRK07334 108 VKVERTRGFGAEVVLHGETLDEARAHARELAEE-EGLTFVHPYDDPAVIAG-QGTVALEMLEDAP-DLDTLVVPIGGGGL 184 (403)
T ss_pred HHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHh-cCCEecCCCCCHHHHHh-HHHHHHHHHhcCC-CCCEEEEecCHHHH
Confidence 577899999999999999999999999998766 68899999999999976 7999999999997 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCC---CcHhhHhhcCCeEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINR---LTQNFMMAKLDGAF 197 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~---~~~~~~~~~~d~~~ 197 (282)
++|++++||+++|++||++|||.+++ ++.++..+ .+....+++++||+++. .++.+....+|+++
T Consensus 185 ~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~-----------~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v 253 (403)
T PRK07334 185 ISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGV-----------ALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDIL 253 (403)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCC-----------CccCCCCCccceecCCCccHHHHHHHHHhCCeEE
Confidence 99999999999999999999999987 56655321 11224568899998653 35566678899999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCC--cchhhhhcChhHHhhC
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSG--MRHLSKFYDVHYLSQQ 267 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg--~ky~~~~~~~~w~~~~ 267 (282)
.|+|+|++++++.|++++|+++|||||++++|++++.+++ ++++||+|+|||+ .+++..+++.+|+..+
T Consensus 254 ~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~~-~~~~vv~i~~ggn~d~~~l~~il~~~l~~~~ 324 (403)
T PRK07334 254 LVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPERF-RGRKVGLVLSGGNIDTRLLANVLLRGLVRAG 324 (403)
T ss_pred EECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchhc-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999876654 6789999999986 4444445555555443
No 26
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.2e-36 Score=289.30 Aligned_cols=204 Identities=21% Similarity=0.311 Sum_probs=177.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++|+++.+.|.+++++ .+++|++||+||.++.| ++|+|+||++|+++.||+||+|+|+|||
T Consensus 102 ~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~-~g~~~i~p~~~~~~i~G-~gtig~EI~~q~~~~~D~vvvpvGgGGl 179 (499)
T TIGR01124 102 IKVDAVRGFGGEVVLHGANFDDAKAKAIELSQE-KGLTFIHPFDDPLVIAG-QGTLALEILRQVANPLDAVFVPVGGGGL 179 (499)
T ss_pred HHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHh-cCCEeeCCCCChHHHHh-hHHHHHHHHHhCCCCCCEEEEccCccHH
Confidence 578899999999999999999999999999776 68899999999999988 6999999999998779999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++.++|+.+|+++||||||.+++ +..+++.|. ++. ....++++|+++..+ ++.+...++|++
T Consensus 180 iaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~----------~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~v 249 (499)
T TIGR01124 180 AAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGE----------PVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDI 249 (499)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCC----------ceeCCCCCCccCcccCCCccHHHHHHHHHhCCEE
Confidence 99999999999999999999999998 666676553 222 235788999987665 334456889999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcC-CCCEEEEEecCCCcchhhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~-~~~~Vv~v~tGgg~ky~~~~ 258 (282)
+.|+|+|+.+|++.|++++|+++||+||+++||+++++++.. ++++||+|+||+|. +++++
T Consensus 250 v~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~-~~~~l 311 (499)
T TIGR01124 250 VTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANM-NFHRL 311 (499)
T ss_pred EEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC-CHHHH
Confidence 999999999999999999999999999999999999876532 57899999999865 44443
No 27
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3e-36 Score=282.83 Aligned_cols=201 Identities=17% Similarity=0.315 Sum_probs=173.2
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++|+++.+.|.+++++ ++++|++||+||.++.| |+|+++||++|++ .||+||+|+|+||+
T Consensus 85 ~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~g-~~t~~~Ei~~q~~-~~D~vv~~vG~Gg~ 161 (380)
T TIGR01127 85 SKVKATKSYGAEVILHGDDYDEAYAFATSLAEE-EGRVFVHPFDDEFVMAG-QGTIGLEIMEDIP-DVDTVIVPVGGGGL 161 (380)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh-cCCEecCCCCChhhhhh-hHHHHHHHHHhCC-CCCEEEEEeChHHH
Confidence 588999999999999999999999999999776 68999999999999876 8999999999998 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCc---HhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLT---QNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~---~~~~~~~~d~~ 196 (282)
++|++.+||++.|++|||||||.+++ +..+++.| ++.. ....++++|+++..+. ..+....+|++
T Consensus 162 ~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g----------~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREG----------KIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcC----------CceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 99999999999999999999999997 55666554 2222 2357889999875542 34456789999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
+.|+|+|+.+++++|++++|+++||+||++++++++.... .++++||+|+|||+ .+.+.
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~-~~~~~vv~i~sGGn-~d~d~ 290 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD-VKGKKIAVVLSGGN-IDLNL 290 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc-cCCCeEEEEeCCCC-CCHHH
Confidence 9999999999999999999999999999999999875432 36789999999975 45544
No 28
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=6.6e-36 Score=282.44 Aligned_cols=203 Identities=17% Similarity=0.299 Sum_probs=174.8
Q ss_pred HhHHHHHhcCCe---EEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 42 KRRRAVDKDGKE---LEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 42 ~~~~~~~~~GA~---v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|+.+|+.|||+ |+.++++|+++.+.|.+++++ ++++|++||+||.++.| ++|+++||++|++..||+||+|+|+
T Consensus 101 ~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~-~g~~~~~~~~~~~~~~g-~~ti~~Ei~~q~~~~~D~vv~pvG~ 178 (409)
T TIGR02079 101 QKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVED-HGGTFIPPFDDPRIIEG-QGTVAAEILDQLPEKPDYVVVPVGG 178 (409)
T ss_pred HHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHh-cCCEEeCCCCCHhHhhh-hHHHHHHHHHhcCCCCCEEEEEecH
Confidence 578899999996 667889999999999998776 57899999999999988 5999999999998679999999999
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCcH---hhHhhcC
Q 038224 119 GGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLTQ---NFMMAKL 193 (282)
Q Consensus 119 GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~~---~~~~~~~ 193 (282)
||+++|++.+||+++|+++||||||.+|+ +..+++.| +++. ...+|+++|+++..++. .+....+
T Consensus 179 GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g----------~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~v 248 (409)
T TIGR02079 179 GGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAG----------EVVTLDKIDNFVDGAAVKRVGDLNFKALKDVP 248 (409)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCC----------CceecCCCCCeeccccCCCCcHHHHHHHHHhC
Confidence 99999999999999999999999999998 66777655 2222 23578999998876543 3446789
Q ss_pred CeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 194 DGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 194 d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
|+++.|+|+|+.++++.|++++|+++|||||+++||++++.+++ ++++||+|+||||. +++.+
T Consensus 249 d~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~~-~~~~Vv~ilsGgn~-d~~~~ 311 (409)
T TIGR02079 249 DEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEEI-KGKTVVCVVSGGNN-DIERT 311 (409)
T ss_pred CcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEECCCCC-CHHHH
Confidence 99999999999999999999999999999999999999877554 68899999999754 55543
No 29
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=6e-36 Score=277.37 Aligned_cols=193 Identities=17% Similarity=0.243 Sum_probs=168.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|+.++|+++++.+.+.+++++ .+++|+++++||++++| |+|+++||++|++ .||+||+|+|+||+
T Consensus 141 ~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~-~~~~~~~~~~np~~~eG-~~t~~~Ei~eql~-~pD~vvvpvG~Gg~ 217 (347)
T PRK08329 141 EKISLLSRLGAELHFVEGDRMEVHEEAVKFSKR-NNIPYVSHWLNPYFLEG-TKTIAYEIYEQIG-VPDYAFVPVGSGTL 217 (347)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCCeeccCCCCchhhcc-chhHHHHHHHHcC-CCCEEEEeCCcHHH
Confidence 588999999999999999999999999888765 57788999999999998 6999999999998 89999999999999
Q ss_pred HHHHHHHHHhcC------CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH-----hhH
Q 038224 122 VAGVSRFLQENN------PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ-----NFM 189 (282)
Q Consensus 122 ~aGi~~g~k~~~------~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~-----~~~ 189 (282)
++|++++|+++. +.+|||+|||.+++ +...+ ...+|+++|++++.++. ...
T Consensus 218 l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~-----------------~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 218 FLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS-----------------KSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc-----------------CCCCceeeeEEeCCCCCHHHHHHHH
Confidence 999999999863 56899999999986 44321 13478899998876542 334
Q ss_pred hhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchh
Q 038224 190 MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHL 255 (282)
Q Consensus 190 ~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~ 255 (282)
.++.+.++.|+|+|++++++.|++ +||++||+||+++||++++.++ +.++++||+++||+|+|++
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 567788999999999999999985 8999999999999999999876 6688999999999999975
No 30
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1e-35 Score=274.21 Aligned_cols=208 Identities=16% Similarity=0.218 Sum_probs=174.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|+.++++++++.+.+.+++++ .+++|++||+||.+++| |+++++||++|++ +||+||+|+|+||+
T Consensus 112 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~-~g~~~~~~~~~~~~~~g-~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~ 188 (333)
T PRK08638 112 SKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEE-EGRTFIPPYDDPKVIAG-QGTIGLEILEDLW-DVDTVIVPIGGGGL 188 (333)
T ss_pred HHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHh-cCCEEcCcCCCcchhcc-ccHHHHHHHhhcC-CCCEEEEEeChhHH
Confidence 578899999999999999999999999998776 57899999999999987 7999999999996 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCcH---hhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLTQ---NFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~~---~~~~~~~d~~ 196 (282)
++|++++||+++|+++||+|||.+|+ ++.++..|. +.. ....|+++|++...++. ...++.+|++
T Consensus 189 ~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~----------~~~~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~ 258 (333)
T PRK08638 189 IAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGE----------ITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDI 258 (333)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCC----------cccCCCCCCeeccccCCCccHHHHHHHHHhCCeE
Confidence 99999999999999999999999997 666776542 221 13457888887655432 2235789999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHH-hcCCCCEEEEEecCCCcchhhhhcChhHHh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~-~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
+.|+|+++++++++|++++|+++|||||+++|++..... ...++++||+|+|| |+.+++++ .+|+.
T Consensus 259 v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~--~~~~~ 325 (333)
T PRK08638 259 VLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSRV--SQITG 325 (333)
T ss_pred EEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHHH--HHHHH
Confidence 999999999999999999999999999999988875432 22367899999998 57788887 45663
No 31
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=286.89 Aligned_cols=204 Identities=20% Similarity=0.323 Sum_probs=176.4
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++|+++.+.|.+++++ ++++|++||+||.+++| ++|+|+||++|+++.||+||+|+|+|||
T Consensus 105 ~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~-~g~~~v~~f~~~~~i~G-~gTi~~EI~~q~~~~~D~vvvpvGgGGl 182 (504)
T PRK09224 105 IKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEE-EGLTFIHPFDDPDVIAG-QGTIAMEILQQHPHPLDAVFVPVGGGGL 182 (504)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHh-cCCEEeCCCCCcHHHHh-HHHHHHHHHHhccCCCCEEEEecChhHH
Confidence 578899999999999999999999999998776 68899999999999998 6999999999998669999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC---cHhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL---TQNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~---~~~~~~~~~d~~ 196 (282)
++|++.++|+++|+++||||||.+++ +..+++.| +++. ....++++|+++..+ ++.+...++|++
T Consensus 183 iaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g----------~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~ 252 (504)
T PRK09224 183 IAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAG----------ERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDV 252 (504)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcC----------CCccCCCCCcccCcccCCCccHHHHHHHHhcCCeE
Confidence 99999999999999999999999998 56677655 3322 235678899987654 234457889999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcC-CCCEEEEEecCCCcchhhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~-~~~~Vv~v~tGgg~ky~~~~ 258 (282)
+.|+|+|+.++++.|++++|+++||+||+++||++++.++.. ++++||+|+||+|. +.+++
T Consensus 253 v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~-~~~~l 314 (504)
T PRK09224 253 ITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANM-NFDRL 314 (504)
T ss_pred EEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCC-CHHHH
Confidence 999999999999999999999999999999999999876521 48899999999865 34443
No 32
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.2e-35 Score=281.79 Aligned_cols=203 Identities=18% Similarity=0.325 Sum_probs=175.0
Q ss_pred HhHHHHHhcCCe---EEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCC--CCEEEEec
Q 038224 42 KRRRAVDKDGKE---LEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGE--LDAFVAAA 116 (282)
Q Consensus 42 ~~~~~~~~~GA~---v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~--pd~ivvpv 116 (282)
.|+.+|+.|||+ |++++++|+++.+.|.+++++ ++++|++||+||.+++| +.|+|+||++|+++. ||+||+|+
T Consensus 110 ~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~-~g~~~~~~~~~~~~~~G-~~tig~EI~eq~~~~~~~D~vv~~v 187 (420)
T PRK08639 110 QKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEE-TGATFIPPFDDPDVIAG-QGTVAVEILEQLEKEGSPDYVFVPV 187 (420)
T ss_pred HHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHh-cCCcccCCCCChhHhcc-hhHHHHHHHHhccccCCCCEEEEec
Confidence 578899999996 666788999999999998776 57999999999999987 699999999999865 99999999
Q ss_pred ChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCc---HhhHhh
Q 038224 117 GTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLT---QNFMMA 191 (282)
Q Consensus 117 G~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~---~~~~~~ 191 (282)
|+||+++|++.+||+++|+++||||||.+|+ +..+++.|. +.. ...+|+++|+++..+. ..+..+
T Consensus 188 G~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~----------~~~~~~~~t~a~gi~v~~~g~~~~~~~~~ 257 (420)
T PRK08639 188 GGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGK----------PVTLEKIDKFVDGAAVARVGDLTFEILKD 257 (420)
T ss_pred ChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCC----------ceeCCCCCCeecccccCCccHHHHHHHHH
Confidence 9999999999999999999999999999998 667776553 221 2457899999876653 334577
Q ss_pred cCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 192 KLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 192 ~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
++|+++.|+|+|+.++++.|++++|+++||+||+++||++++.+.+ ++++||+|+|||+. +++.+
T Consensus 258 ~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sGgn~-d~~~~ 322 (420)
T PRK08639 258 VVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISGGNN-DIERM 322 (420)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCCCCC-CHHHH
Confidence 8999999999999999999999999999999999999999877655 68899999999754 55544
No 33
>PLN02970 serine racemase
Probab=100.00 E-value=1e-35 Score=273.99 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=172.1
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhH
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG 120 (282)
.+|+++|+.|||+|+.++++++++.+.+.+++++ ++++|++||+||.++++ |+++++||++|++ .||+||+|+|+||
T Consensus 111 ~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~-~g~~~~~~~~n~~~~~g-~~t~g~Ei~~ql~-~~D~vv~~vG~GG 187 (328)
T PLN02970 111 ACKVDAVIRYGGIITWCEPTVESREAVAARVQQE-TGAVLIHPYNDGRVISG-QGTIALEFLEQVP-ELDVIIVPISGGG 187 (328)
T ss_pred HHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHh-cCCEEeCCCCCcchhhe-hHHHHHHHHHhcc-CCCEEEEeeCchH
Confidence 4678899999999999999999999999998766 68999999999998887 7999999999998 6999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC--cHhhHhhcCCeE
Q 038224 121 TVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL--TQNFMMAKLDGA 196 (282)
Q Consensus 121 ~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~--~~~~~~~~~d~~ 196 (282)
+++|++++||+.+|+++||+|||.+++ +..++..|. ++. ...+++++|++.... .+....+.+|++
T Consensus 188 ~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~----------~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~ 257 (328)
T PLN02970 188 LISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGE----------IITLPVTNTIADGLRASLGDLTWPVVRDLVDDV 257 (328)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCC----------ceeCCCCCCccccccCCcCHHHHHHHHhhCCEE
Confidence 999999999999999999999999987 666665442 221 234788899876421 234456788999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh---cCC-CCEEEEEecCCCcchhhhhc
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS---LGP-GHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~---~~~-~~~Vv~v~tGgg~ky~~~~~ 259 (282)
+.|+|+|++++++.|++++|+++|||||++++++++...+ +.+ +++||+|+||| +.+++.|+
T Consensus 258 v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Gg-n~~~~~~~ 323 (328)
T PLN02970 258 ITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGG-NVDLGVLW 323 (328)
T ss_pred EEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCC-CCCHHHHH
Confidence 9999999999999999999999999999999997764322 123 47999999996 55666653
No 34
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2e-35 Score=271.32 Aligned_cols=203 Identities=18% Similarity=0.303 Sum_probs=172.4
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|+.++++++++.+.+.+++++ .+++|++||+||.++.+ |+++++||++|++ .||+||+|+|+||+
T Consensus 109 ~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~-~g~~~~~~~~~~~~~~g-~~t~~~EI~~q~~-~~D~vv~~vGtGG~ 185 (321)
T PRK07048 109 AKVAATRGYGGEVVTYDRYTEDREEIGRRLAEE-RGLTLIPPYDHPHVIAG-QGTAAKELFEEVG-PLDALFVCLGGGGL 185 (321)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh-cCCEEECCCCCcchhhc-cchHHHHHHhhcC-CCCEEEEecChhHH
Confidence 478899999999999999999999999888766 67999999999998876 7999999999998 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCC---cHhhHhhcCCeEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL---TQNFMMAKLDGAF 197 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~---~~~~~~~~~d~~~ 197 (282)
++|++++||++.|+++||+|||.+++ ++.++..|... .+ ....++++|+.+..+ .+....+++|+++
T Consensus 186 ~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~--------~~-~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~ 256 (321)
T PRK07048 186 LSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIV--------HI-DTPRTIADGAQTQHLGNYTFPIIRRLVDDIV 256 (321)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcc--------cC-CCCCCcccccccCCccHHHHHHHHHhCCceE
Confidence 99999999999999999999999987 66666554211 01 135678888765432 2344567899999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
.|+|+|++++++.|++++|+++||+||+++++++++.++ .++++||+|+||| +.+++.+
T Consensus 257 ~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~-~~~~~vv~i~tGG-n~~~~~~ 315 (321)
T PRK07048 257 TVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP-LKGKRVGVIISGG-NVDLARF 315 (321)
T ss_pred EECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh-cCCCeEEEEeCCC-CCCHHHH
Confidence 999999999999999999999999999999999987665 3678999999996 5566655
No 35
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.9e-35 Score=279.01 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=182.0
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC--------CCCEE
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG--------ELDAF 112 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~--------~pd~i 112 (282)
..|+++|+.|||+|++++++|+++.+.|.+++++..+++|++++++|..++| |+|+++||++|+++ .||+|
T Consensus 193 ~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG-~~Tig~EI~eQl~~~~~~vD~~~Pd~V 271 (441)
T PRK02991 193 QWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLG-YAVAGLRLKAQLAEQGIVVDADHPLFV 271 (441)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHh-HHHHHHHHHHHhhhccCccccCCCCEE
Confidence 3688999999999999999999999999998776446889999988888876 89999999999973 36799
Q ss_pred EEecChhHHHHHHHHHHHhc-CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc---Hh
Q 038224 113 VAAAGTGGTVAGVSRFLQEN-NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT---QN 187 (282)
Q Consensus 113 vvpvG~GG~~aGi~~g~k~~-~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~---~~ 187 (282)
|+|+|+||+++|++++||++ .|+++||+|||.+++ ++.+++.|...... -+.+.....|+++|++++.+. +.
T Consensus 272 vvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~---~~~~g~~~~Tiadgl~~~~~~~~~~~ 348 (441)
T PRK02991 272 YLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQIS---VQDIGIDNLTAADGLAVGRASGFVGR 348 (441)
T ss_pred EEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCccee---ccccCCCCcchhhhhcCCCcchhHHH
Confidence 99999999999999999997 688999999999997 67777766321100 000001246899999987653 34
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--------cC---CCCEEEEEecCCCcchhh
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--------LG---PGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--------~~---~~~~Vv~v~tGgg~ky~~ 256 (282)
+.++.+|+++.|+|+|++++++.|++++|+++|||||+++|+++++.+. +. ++++||++.|||+.++.+
T Consensus 349 ~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~ 428 (441)
T PRK02991 349 AMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE 428 (441)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH
Confidence 4567899999999999999999999999999999999999999876542 23 578999999999999888
Q ss_pred hhcChhHHhhC
Q 038224 257 KFYDVHYLSQQ 267 (282)
Q Consensus 257 ~~~~~~w~~~~ 267 (282)
.+ .+|+.+.
T Consensus 429 ~~--~~~~~~~ 437 (441)
T PRK02991 429 EM--EQYLAKG 437 (441)
T ss_pred HH--HHHHHhh
Confidence 76 4677653
No 36
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=271.09 Aligned_cols=198 Identities=18% Similarity=0.329 Sum_probs=171.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|+.++++++++...+.+++++ ++++|++||+||.++.+ |+++++||++|++ .||+||+|+|+||+
T Consensus 105 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~g-~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~ 181 (317)
T PRK06815 105 IKLDAIRALGAEVRLYGGDALNAELAARRAAEQ-QGKVYISPYNDPQVIAG-QGTIGMELVEQQP-DLDAVFVAVGGGGL 181 (317)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh-cCCEEecCCCChhhhcc-hhHHHHHHHHhcC-CCCEEEEECcHHHH
Confidence 478899999999999999999999999888765 57889999999988875 8999999999998 69999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCC----cHhhHhhcCCe
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRL----TQNFMMAKLDG 195 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~----~~~~~~~~~d~ 195 (282)
++|++.+|+++.|+++||||||.+++ ++.+++.|. +.. ...+++++|++.... +..+..+++|+
T Consensus 182 ~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~----------~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~ 251 (317)
T PRK06815 182 ISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGE----------IVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQ 251 (317)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCC----------cccCCCCCChhhhhccCCcccHHHHHHHHHhCCe
Confidence 99999999999999999999999997 667765542 111 134678888754422 23455778999
Q ss_pred EEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 196 ~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
++.|+|+|++++++.|++++||++||+||+++++++++.+++ ++++||+|+||+|.+
T Consensus 252 ~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 252 KVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCGKNIV 308 (317)
T ss_pred EEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECCCCCC
Confidence 999999999999999999999999999999999999988765 678999999999886
No 37
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.6e-35 Score=270.03 Aligned_cols=201 Identities=14% Similarity=0.200 Sum_probs=170.2
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++|+++.+.+.+++++ .+++|++||+||.+++| |+++++||++|++ .+|+||+|+|+||+
T Consensus 104 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~-~g~~~~~~~~n~~~~~g-~~t~a~Ei~~q~~-~~d~vvv~~G~Gg~ 180 (317)
T TIGR02991 104 NKVDEIRRLGAEVRIVGRSQDDAQEEVERLVAD-RGLTMLPPFDHPDIVAG-QGTLGLEVVEQMP-DLATVLVPLSGGGL 180 (317)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHh-cCCEeeCCCCChHHHhh-HHHHHHHHHHhCC-CCCEEEEEcChhHH
Confidence 578899999999999999999999999998766 58899999999999987 6999999999998 68999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccC--CCC---CcHhhHhhcCC
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIG--INR---LTQNFMMAKLD 194 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~--~~~---~~~~~~~~~~d 194 (282)
++|++++||+++|.++||+|||++++ ++.+++.|. ++. ...+|+++|++ .+. .++.+..+.+|
T Consensus 181 ~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~----------~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd 250 (317)
T TIGR02991 181 ASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGR----------PVLVAELPTLADSLGGGIGLDNRVTFAMCKALLD 250 (317)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCC----------cccCCCCCChhhhhhhccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999876 667765542 221 24578888763 222 24556678899
Q ss_pred eEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 195 GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 195 ~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
+++.|+|+|++++++.|++++|+++||+||+++|++++.. +.++++||+|+||+|. +.+.+
T Consensus 251 ~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~--~~~~~~vvvvltG~n~-~~~~~ 311 (317)
T TIGR02991 251 EIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGK--IKNPGPCAVIVSGRNI-DMDLH 311 (317)
T ss_pred eEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCc--cccCCcEEEEeCCCCC-CHHHH
Confidence 9999999999999999999999999999999999997432 3357899999999876 44444
No 38
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=268.87 Aligned_cols=205 Identities=15% Similarity=0.163 Sum_probs=174.0
Q ss_pred hHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHH
Q 038224 43 RRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTV 122 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~ 122 (282)
|+++|+.|||+|+.++++|+++.+.+.+++++ ++++|++|| ||.+++| |+++++||++|++ .||+||+|+|+||++
T Consensus 108 k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~-~~~~~~G-~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~ 183 (322)
T PRK06110 108 KNAAMRALGAELIEHGEDFQAAREEAARLAAE-RGLHMVPSF-HPDLVRG-VATYALELFRAVP-DLDVVYVPIGMGSGI 183 (322)
T ss_pred HHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCCEEcCCC-CChHHhc-cchHHHHHHhhCC-CCCEEEEecCHHHHH
Confidence 56789999999999999999999999998766 578999998 5777876 8999999999998 799999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCCCCc-H--hhHhhcCCeEE
Q 038224 123 AGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGINRLT-Q--NFMMAKLDGAF 197 (282)
Q Consensus 123 aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~~~~-~--~~~~~~~d~~~ 197 (282)
+|++.+|++.+|++|||+|||.+++ +..+++.|. ++. ...+++++|++...+. . .+.++.+|+++
T Consensus 184 ~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~----------~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~ 253 (322)
T PRK06110 184 CGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGR----------VVTTPVATTLADGMACRTPDPEALEVIRAGADRIV 253 (322)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCC----------cccCCCCCCcccccCCCCccHHHHHHHHHhCCeEE
Confidence 9999999999999999999999987 556666542 222 1357889998765432 2 23357899999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcChhHHh
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
.|+|+|++++++.|++++|+++||+||+++++++++.+.+ ++++||+|+||| +.+++.+ .+|+.
T Consensus 254 ~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tGg-n~d~~~~--~~~~~ 317 (322)
T PRK06110 254 RVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSGG-NIDRAVF--ARVLA 317 (322)
T ss_pred EECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECCC-CCCHHHH--HHHHh
Confidence 9999999999999999999999999999999999876654 678999999995 6788877 45665
No 39
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=3.6e-35 Score=276.82 Aligned_cols=208 Identities=15% Similarity=0.194 Sum_probs=174.3
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChh
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTG 119 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~G 119 (282)
..|+.+|+.|||+|+.++|+|+++.+.+.+++++ .++|+++++ ||++++| |+|+++||++|+++ .||+||+|+|+|
T Consensus 152 ~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~-~g~y~~~~~-np~~~~G-~~t~a~Ei~eQl~~~~pd~vvvpvG~G 228 (397)
T PRK06260 152 LGKLAQALLHGAKVLEVDGNFDDALDMVVELAKE-GKIYLLNSI-NPFRLEG-QKTIGFEIADQLGWEVPDRVVLPVGNA 228 (397)
T ss_pred HHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhh-CCEEeecCC-Cchhhcc-hhhHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 3588899999999999999999999999998766 578888887 8999998 69999999999997 699999999999
Q ss_pred HHHHHHHHHHHhcC------CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc---H--h
Q 038224 120 GTVAGVSRFLQENN------PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT---Q--N 187 (282)
Q Consensus 120 G~~aGi~~g~k~~~------~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~---~--~ 187 (282)
|+++|++++|+++. +.+|||+|||.+++ +..+++.|.... .++ ...+|+++++.++.+. . .
T Consensus 229 g~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~------~~~-~~~~tia~~i~i~~p~~~~~~~~ 301 (397)
T PRK06260 229 GNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEI------EPV-ENPETVATAIRIGNPVNAPKALR 301 (397)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcc------ccc-CCCCceeeeeEeCCCCCHHHHHH
Confidence 99999999999875 34799999999986 777776553210 011 1357888888764431 1 2
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhh
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
...+..+.++.|+|+|++++++.|++++|+++||+||++++|++++.++ +.++++||+|+||+|+|+.+.+
T Consensus 302 ~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 302 AIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred HHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 3355678899999999999999999999999999999999999998876 5678999999999999988755
No 40
>PLN02569 threonine synthase
Probab=100.00 E-value=4.1e-35 Score=280.82 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=174.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCC-CCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGE-LDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~-pd~ivvpvG~GG 120 (282)
.|+.+|+.|||+|+.++|+|+++.+.+.+++++ .++|+++++ ||++++| |+|+++||++|++++ ||+||+|+|+||
T Consensus 225 ~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~-~~~~~~n~~-Np~~ieG-~kT~a~EI~eQl~~~~pD~VvvPvG~Gg 301 (484)
T PLN02569 225 AQLVQPIANGALVLSIDTDFDGCMRLIREVTAE-LPIYLANSL-NSLRLEG-QKTAAIEILQQFDWEVPDWVIVPGGNLG 301 (484)
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHH-cCCEecCCC-CcchhHh-HHHHHHHHHHHcCCCCCCEEEEeCCchH
Confidence 689999999999999999999999999998765 568899988 9999998 699999999999975 999999999999
Q ss_pred HHHHHHHHHHhcC------CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH-----hh
Q 038224 121 TVAGVSRFLQENN------PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ-----NF 188 (282)
Q Consensus 121 ~~aGi~~g~k~~~------~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~-----~~ 188 (282)
++.|++++|+++. +.+|||+|||.+|+ ++.+|+.|.... .++ ...+|+++||+++.+.. ..
T Consensus 302 ~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~------~~~-~~~~T~A~gi~i~~P~~~~~~l~a 374 (484)
T PLN02569 302 NIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEF------KPV-KANPTFASAIQIGDPVSIDRAVYA 374 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCcc------ccC-CCCCccchhhccCCCccHHHHHHH
Confidence 9999999999863 45799999999996 778877653210 111 24678999998775421 11
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhhc
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
.....+.++.|+|+|++++++. ++++||++||+||++++|++++.++ +.++++||+++||+|+||.+...
T Consensus 375 l~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~~ 446 (484)
T PLN02569 375 LKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSKI 446 (484)
T ss_pred HHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHHH
Confidence 2344556799999999999999 8899999999999999999999875 56788999999999999987643
No 41
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4e-35 Score=270.48 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=159.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG 120 (282)
.|+++|+.|||+|+.++|+|+++.+.+ ++ ++++|+++++||++++| |+|+++||++|+++ .||+||+|+|+||
T Consensus 134 ~k~~~i~~~GA~vi~v~~~~~~~~~~a----~~-~g~~~~~~~~np~~ieG-~kTia~EI~eql~~~~pD~vvvpvG~Gg 207 (338)
T PRK06450 134 GKLKQIESYGAEVVRVRGSREDVAKAA----EN-SGYYYASHVLQPQFRDG-IRTLAYEIAKDLDWKIPNYVFIPVSAGT 207 (338)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHH----Hh-cCeEeccCCCCccHHHH-HHHHHHHHHHHcCCCCCCEEEEECCchH
Confidence 688999999999999999999987763 22 46789999999999998 79999999999986 5999999999999
Q ss_pred HHHHHHHHHHhcCC------CcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH-----hh
Q 038224 121 TVAGVSRFLQENNP------NIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ-----NF 188 (282)
Q Consensus 121 ~~aGi~~g~k~~~~------~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~-----~~ 188 (282)
+++|++++|+++.+ .+|||+|||.+|+ +..+++.+.. .+ ....+|+++||.++.++. ..
T Consensus 208 ll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~--------~~-~~~~~tia~~l~~~~p~~~~~~~~~ 278 (338)
T PRK06450 208 LLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISY--------TP-PDKVTSIADALVSTRPFLLDYMVKA 278 (338)
T ss_pred HHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCC--------CC-CCCCCcceeeeecCCCCCHHHHHHH
Confidence 99999999999764 3799999999986 7777652210 11 124578999998765432 12
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchh
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHL 255 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~ 255 (282)
.+.. +.++.|+|+|+++++++|++ +|+++||+||+++||++++ ++++||+|+||+|+|.+
T Consensus 279 i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l-----~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 279 LSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY-----SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC-----CCCCEEEEeCCCCccCC
Confidence 2344 88999999999999999987 6999999999999999875 45799999999999964
No 42
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=8e-35 Score=265.13 Aligned_cols=198 Identities=20% Similarity=0.317 Sum_probs=171.3
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++|+++.+.+.+++++ ++++|++||.||.++.+ |+++++||++|++ .||+||+|+|+|||
T Consensus 102 ~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~-~~~~~~~~~~n~~~~~g-~~~~~~Ei~~q~~-~~d~vv~~vGtGgt 178 (304)
T cd01562 102 AKVDATRAYGAEVVLYGEDFDEAEAKARELAEE-EGLTFIHPFDDPDVIAG-QGTIGLEILEQVP-DLDAVFVPVGGGGL 178 (304)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHh-cCCEEeCCCCCcchhcc-HHHHHHHHHHhcC-CCCEEEEecCHHHH
Confidence 367889999999999999999999999999776 57899999999999876 6999999999998 49999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc---HhhHhhcCCeEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT---QNFMMAKLDGAF 197 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~---~~~~~~~~d~~~ 197 (282)
++|++++||+++|.++||+|||.+++ ++.+++.|... ......++++|++...++ +.+..+..|.++
T Consensus 179 ~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 249 (304)
T cd01562 179 IAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPV---------TLPEVDTIADGLAVKRPGELTFEIIRKLVDDVV 249 (304)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcc---------cCCCCCcccccccCCCchHHHHHHHHHhCCeEE
Confidence 99999999999999999999999987 66666554211 011246788888765442 345567899999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCc
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGM 252 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ 252 (282)
.|+|++++++++.|++++|+++||+||+++++++++.++. ++++||+|+|||+.
T Consensus 250 ~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tGG~~ 303 (304)
T cd01562 250 TVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSGGNI 303 (304)
T ss_pred EECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecCCCC
Confidence 9999999999999999999999999999999999988765 78899999999975
No 43
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=3.9e-35 Score=272.29 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=166.0
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhH
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG 120 (282)
.+|+++|+.|||+|+.++++|+++.+.+.+++++ +++++++ +.||.+++| |+++++||++|++..||+||+|+|+||
T Consensus 112 ~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~-~~~~~~~-~~n~~~~~G-~~t~~~EI~~Q~~~~~D~vvv~vG~GG 188 (351)
T PRK06352 112 LGKLAQAVMYGADIISIQGNFDEALKSVRELAET-EAVTLVN-SVNPYRLEG-QKTAAFEICEQLGSAPDVLAIPVGNAG 188 (351)
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHh-cCccccc-CCCccceee-HHHHHHHHHHHcCCCCCEEEEECCchH
Confidence 3578899999999999999999999999988765 4555555 569999988 699999999999867999999999999
Q ss_pred HHHHHHHHHHhcCCC-----cEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCC-cHhhH----h
Q 038224 121 TVAGVSRFLQENNPN-----IKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL-TQNFM----M 190 (282)
Q Consensus 121 ~~aGi~~g~k~~~~~-----~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~-~~~~~----~ 190 (282)
+++|++++||+++|. ++||+|||.+++.+.. |+++. ..+++++|+.++.+ .+... .
T Consensus 189 ~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~-------------g~~~~-~~~~ia~~l~~~~~~~~~~~~~~~d 254 (351)
T PRK06352 189 NISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQ-------------GKPID-NPETIATAIRIGNPASWGLAEAARD 254 (351)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHh-------------CCCcC-CCCcceeEEEeCCCCcHHHHHHHHH
Confidence 999999999998876 8999999999873221 12221 24577777765432 22222 2
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhhc
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
...+.++.|+|+++++++++|++++||++||+||+++||+++++++ +.++++||+|+||+|+||++++-
T Consensus 255 ~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~~ 325 (351)
T PRK06352 255 ESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAM 325 (351)
T ss_pred HhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHHH
Confidence 2344589999999999999999999999999999999999998764 55678999999999999998763
No 44
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=268.50 Aligned_cols=211 Identities=18% Similarity=0.216 Sum_probs=173.4
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++++++.+.+.+++++ .++++.+ +.||.+++| |.++++||++|++..||+||+|+|+||+
T Consensus 113 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~-~~~~~~~-~~n~~~~~G-~~t~~~Ei~eq~~~~~D~ivv~vG~GG~ 189 (352)
T PRK06721 113 GKLAQAVAYGAEIISIEGNFDDALKAVRNIAAE-EPITLVN-SVNPYRIEG-QKTAAFEICDQLQRAPDVLAIPVGNAGN 189 (352)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-CCceecc-CCCchhhhh-hhhHHHHHHHHhCCCCCEEEEeCCchHH
Confidence 477889999999999999999999999988766 4566665 579999998 5999999999998679999999999999
Q ss_pred HHHHHHHH----HhcC-CCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCc-H----hhHhh
Q 038224 122 VAGVSRFL----QENN-PNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT-Q----NFMMA 191 (282)
Q Consensus 122 ~aGi~~g~----k~~~-~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~-~----~~~~~ 191 (282)
++|++.++ |+.+ |.++||+|||.+++.+.. +..+ ...++++++++++.+. + .....
T Consensus 190 l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~-------------g~~~-~~~~tia~~l~~~~~~~~~~~~~~~~~ 255 (352)
T PRK06721 190 ITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVK-------------GHVI-DEPETIATAIRIGNPASWSYAVEAAEQ 255 (352)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhh-------------CCcC-CCCCceeeccccCCCCCHHHHHHHHHh
Confidence 99866555 4454 889999999999873321 1222 1346778888765432 1 11245
Q ss_pred cCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhhcChhHHhhCCC
Q 038224 192 KLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFYDVHYLSQQGL 269 (282)
Q Consensus 192 ~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~~~~ 269 (282)
.+|.++.|+|+|+++++++|++++||++||++|++++++++++++ +.++++||+|+||+|.||++.++++.|.....+
T Consensus 256 ~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~~~~~~~ 335 (352)
T PRK06721 256 SHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNTLDIASV 335 (352)
T ss_pred cCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhccCCcccC
Confidence 789999999999999999999999999999999999999998764 567889999999999999999998888765544
No 45
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-34 Score=267.52 Aligned_cols=200 Identities=16% Similarity=0.243 Sum_probs=169.1
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++|+++.+.+.+++++ ++++|++||+||.+++| |+|+|+||++| .||+||+|+|+||+
T Consensus 118 ~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~-~g~~~v~~~~np~~i~G-~~Tig~EI~e~---~pD~VvvpvGgGGl 192 (349)
T PRK08813 118 TKIAGVAHWGATVRQHGNSYDEAYAFARELADQ-NGYRFLSAFDDPDVIAG-QGTVGIELAAH---APDVVIVPIGGGGL 192 (349)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCCEEcCccCChHHHHH-HHHHHHHHHcC---CCCEEEEEeCccHH
Confidence 578899999999999999999999999999876 68999999999999998 69999999987 47999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCC---cHhhHhhcCCeEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL---TQNFMMAKLDGAF 197 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~---~~~~~~~~~d~~~ 197 (282)
++|++++||+ +.++||||||++++ +..++. |... .+ ...+|+++|+++..+ ++.+....+|+++
T Consensus 193 iaGia~~lk~--~~~rVigVqpega~~~~~s~~-g~~~--------~~-~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv 260 (349)
T PRK08813 193 ASGVALALKS--QGVRVVGAQVEGVDSMARAIR-GDLR--------EI-APVATLADGVKVKIPGFLTRRLCSSLLDDVV 260 (349)
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCchHHHHHc-CCCc--------cc-CCCCceecccccCCcchhHHHHHHHhCCeEE
Confidence 9999999996 56899999999997 666665 3211 11 234689999986543 4455678899999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcChhHHhh
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDVHYLSQ 266 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~~w~~~ 266 (282)
.|+|+|+.++++.|++++|+++||+||+++||++++ ++++|++|+||||. +++++ ..|+..
T Consensus 261 ~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~-----~~~~v~~vlsGgN~-d~~~~--~~~~~~ 321 (349)
T PRK08813 261 IVREAELRETLVRLALEEHVIAEGAGALALAAGRRV-----SGKRKCAVVSGGNI-DATVL--ATLLSE 321 (349)
T ss_pred EECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh-----CCCCEEEEECCCCC-CHHHH--HHHHHh
Confidence 999999999999999999999999999999998762 46789999999865 66666 356654
No 46
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-34 Score=266.58 Aligned_cols=206 Identities=14% Similarity=0.223 Sum_probs=171.4
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|++++++++++.+.+.+++++ .+++|++||+||.++.| ++++++||++|++ ++|+||+|+|+||+
T Consensus 104 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~-~g~~~~~~~~n~~~~~g-~~t~~~Ei~~Q~~-~~d~iv~~vG~GG~ 180 (322)
T PRK07476 104 NKVDAIRALGAEVRIVGRSQDDAQAEVERLVRE-EGLTMVPPFDDPRIIAG-QGTIGLEILEALP-DVATVLVPLSGGGL 180 (322)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHh-cCCEEeCCCCCcceeec-hhHHHHHHHHhCc-CCCEEEEEcChHHH
Confidence 477889999999999999999999999998766 57899999999999987 6999999999998 68999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCcccc-CCCCccccccCCC--C---CcHhhHhhcCC
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLK-NPFDTITEGIGIN--R---LTQNFMMAKLD 194 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~-~~~~t~a~gi~~~--~---~~~~~~~~~~d 194 (282)
++|++++||++.|+++||+|||.+++ ++.++..|. ++. ...+|+++|++.+ . .+.......+|
T Consensus 181 ~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~----------~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d 250 (322)
T PRK07476 181 ASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGR----------PVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLD 250 (322)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCC----------ceeCCCCCCccccccccccCCcHHHHHHHHhcCC
Confidence 99999999999999999999999887 677776552 221 2356778877432 2 23345567899
Q ss_pred eEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCC-CEEEEEecCCCcchhhhhcChhHHh
Q 038224 195 GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG-HTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 195 ~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~-~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
+++.|+|+|++++++.|++++|+++||+||++++++++. .+.++ ++||+++||+|. +.+++ ..|+.
T Consensus 251 ~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~--~~~~~~~~Vvvi~tGg~~-~~~~~--~~~~~ 317 (322)
T PRK07476 251 DVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAG--KIAARDGPIVVVVSGANI-DMELH--RRIIN 317 (322)
T ss_pred eEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhC--CcccCCCcEEEEECCCCC-CHHHH--HHHHh
Confidence 999999999999999999999999999999999999843 23343 899999999876 55555 34553
No 47
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.5e-34 Score=272.28 Aligned_cols=208 Identities=17% Similarity=0.209 Sum_probs=170.4
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecC-----CCCC-hHHHHhhhhcHHHHHHHHhCC---CCCE
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD-----QFEN-LANFRAHYEGTGPEIWEQTGG---ELDA 111 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~-----~~~n-p~~~~gh~~t~a~EI~eQl~~---~pd~ 111 (282)
..|+.+|+.|||+|+.++++++++.+.+.+++++ .+++|++ ||+| |.++..||+|+++||++|+++ .||+
T Consensus 152 ~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~ 230 (399)
T PRK08206 152 EERVDAIRALGAECIITDGNYDDSVRLAAQEAQE-NGWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTH 230 (399)
T ss_pred HHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHH-cCCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCE
Confidence 3688999999999999999999999999998766 5788886 6875 445555699999999999986 5999
Q ss_pred EEEecChhHHHHHHHHHHHhcC--CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCC---c
Q 038224 112 FVAAAGTGGTVAGVSRFLQENN--PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL---T 185 (282)
Q Consensus 112 ivvpvG~GG~~aGi~~g~k~~~--~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~---~ 185 (282)
||+|+|+||+++|++++|++++ +.++||+|||.+++ ++.+++.|... .+....+|+++|+.++.+ +
T Consensus 231 vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~--------~~~~~~~tia~gl~~~~~~~~~ 302 (399)
T PRK08206 231 VFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPV--------AVTGDMDTIMAGLACGEPNPLA 302 (399)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcE--------EeCCCCCceeccCCCCCcCHHH
Confidence 9999999999999999999984 47899999999997 56677655211 111123689999987654 3
Q ss_pred HhhHhhcCCeEEEcCHHHHHHHHHHHHH----hcCceEecchHHHHHHHHHHHH-----------hcCCCCEEEEEecCC
Q 038224 186 QNFMMAKLDGAFRGTDREAVEMSRFLVK----NDGLFLGSSSAMNCVGAVRVAQ-----------SLGPGHTIVTILCDS 250 (282)
Q Consensus 186 ~~~~~~~~d~~~~V~d~e~~~a~~~la~----~eGi~~epssaaalaal~~l~~-----------~~~~~~~Vv~v~tGg 250 (282)
+.+.+..+|+++.|+|+|++++++.|++ ++|+++|||||+++||++++.+ .++++++||+|+||
T Consensus 303 ~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltg- 381 (399)
T PRK08206 303 WEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLISTE- 381 (399)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEECC-
Confidence 3455778999999999999999999996 7899999999999999997641 24568899999995
Q ss_pred Ccchhhhh
Q 038224 251 GMRHLSKF 258 (282)
Q Consensus 251 g~ky~~~~ 258 (282)
|+++.+++
T Consensus 382 G~~d~~~~ 389 (399)
T PRK08206 382 GDTDPDRY 389 (399)
T ss_pred CCCCHHHH
Confidence 57777766
No 48
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=268.53 Aligned_cols=215 Identities=32% Similarity=0.480 Sum_probs=190.6
Q ss_pred HHhHHHHHhcCCeEEEeCCC--hhH---HHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEe
Q 038224 41 SKRRRAVDKDGKELEHINGY--GSD---GAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAA 115 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~--~~~---a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvp 115 (282)
.||+..|++|||+|++++-. ++. +...+.++..+.++.+.++||+||.|+..||.+++.|||+|+.++||.+|.+
T Consensus 140 ~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~g 219 (362)
T KOG1252|consen 140 KEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAG 219 (362)
T ss_pred HHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEec
Confidence 37899999999999999752 344 8888888877778999999999999999999999999999999899999999
Q ss_pred cChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCe
Q 038224 116 AGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDG 195 (282)
Q Consensus 116 vG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~ 195 (282)
+|+|||++|+++++|+++|+++|++|||.++.+++-...| +..+.+.|||.+..|..++...+|+
T Consensus 220 aGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g---------------~~~~~I~GIGyg~~p~~ld~~~vd~ 284 (362)
T KOG1252|consen 220 AGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPG---------------PTFHKIQGIGYGFIPTTLDTKLVDE 284 (362)
T ss_pred cCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCC---------------CCccceeccccCcCccccchHHHHH
Confidence 9999999999999999999999999999999876542211 1247899999999999999999999
Q ss_pred EEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEe-cCCCcchhhhhcChhHHhhCCCC
Q 038224 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTIL-CDSGMRHLSKFYDVHYLSQQGLT 270 (282)
Q Consensus 196 ~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~-tGgg~ky~~~~~~~~w~~~~~~~ 270 (282)
.+.+.+++++.+.|+|+.+||+++++||+++++++++++++.....++++++ ++++.+|++++++++|+.+....
T Consensus 285 ~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 285 VLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998765555666666 99999999999999999887543
No 49
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.6e-34 Score=261.76 Aligned_cols=199 Identities=18% Similarity=0.311 Sum_probs=166.3
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+.+|+.|||+|+.++++++++.+.+.+++++ .+++|++||+||.++.+ |+++++||++|++ .||+||+|+|+||+
T Consensus 105 ~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~-~g~~~~~~~~n~~~i~g-~~t~~~Ei~eq~~-~~D~iv~~vG~GG~ 181 (310)
T PRK08246 105 AKVARLRALGAEVVVVGAEYADALEAAQAFAAE-TGALLCHAYDQPEVLAG-AGTLGLEIEEQAP-GVDTVLVAVGGGGL 181 (310)
T ss_pred HHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHh-cCCEeCCCCCChhhhcc-hHHHHHHHHHhcC-CCCEEEEecCccHH
Confidence 467889999999999999999999999988766 58999999999999986 7999999999997 79999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCC-CCccccccCCCCCc---HhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNP-FDTITEGIGINRLT---QNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~-~~t~a~gi~~~~~~---~~~~~~~~d~~ 196 (282)
++|++.+|+. .++|++|||.+++ ++.+|+.|. ++... ..+.+++++.+.++ +.+.....|.+
T Consensus 182 ~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 248 (310)
T PRK08246 182 IAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGE----------PVDVPVSGIAADSLGARRVGEIAFALARAHVVTS 248 (310)
T ss_pred HHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCC----------cccCCCCCceeccccCCCccHHHHHHHHhcCCeE
Confidence 9999999965 4799999999997 677776653 22222 23445667765543 34667789999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
+.|+|+|+++++++|++++|+++|||||++++++++...++.++++||+|+||+|. +.++
T Consensus 249 ~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g~n~-d~~~ 308 (310)
T PRK08246 249 VLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCGANT-DPAT 308 (310)
T ss_pred EEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECCCCC-Chhh
Confidence 99999999999999999999999999999999997654444567899999999754 4443
No 50
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=9.9e-34 Score=263.28 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=166.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
.|+++|+.|||+|+.++++|+++.+.+.++.++ .+++++++ .||.+++| |.++++||++|++..||+||+|+|+||+
T Consensus 116 ~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~-~~~~~~~~-~n~~~~~g-~~t~~~EI~~q~~~~~d~iv~~vG~GG~ 192 (353)
T PRK07409 116 GKLAQAVMYGAEIIQIDGNFDDALEIVRELAEK-YPVTLVNS-VNPYRIEG-QKTAAFEIVDALGDAPDYHCIPVGNAGN 192 (353)
T ss_pred hhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHh-cCceecCC-CCchhhhh-HHHHHHHHHHHhCCCCCEEEEeCCChHH
Confidence 578899999999999999999999999988765 45777765 59999998 5999999999998679999999999999
Q ss_pred HHHHHHHHHhcCC------CcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCc-H----hhHh
Q 038224 122 VAGVSRFLQENNP------NIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT-Q----NFMM 190 (282)
Q Consensus 122 ~aGi~~g~k~~~~------~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~-~----~~~~ 190 (282)
++|++++|+++.+ .+++|+|||.+++.+.. ++++. ...++++|++++.+. . ....
T Consensus 193 ~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~-------------g~~~~-~~~ti~~~l~~~~~~~~~~~~~~~~ 258 (353)
T PRK07409 193 ITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVR-------------GEPVK-NPETIATAIRIGNPASWDKAVAARD 258 (353)
T ss_pred HHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhh-------------CCcCC-CCcceeeeeecCCCCCHHHHHHHHH
Confidence 9999999998643 48999999998863321 12221 245778888765322 1 1234
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhhhc
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
...++++.|+|+|+++++++|++++|+++||+||+++++++++.++ +.++++||+|+||+|+||++++.
T Consensus 259 ~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~ 329 (353)
T PRK07409 259 ESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAI 329 (353)
T ss_pred HhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHHH
Confidence 4567899999999999999999999999999999999999998765 66788999999999999999874
No 51
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-34 Score=258.22 Aligned_cols=200 Identities=15% Similarity=0.228 Sum_probs=176.5
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
-|...++.+||+|++.+.+||+|-+.|.+++.+ +++.|++|||+|+.|+|| .|++.||.+|++.++++|+||||+||+
T Consensus 151 ~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke-~gl~yI~pfDhP~I~aGq-gTig~EIl~ql~~~~~AI~vpVGGGGL 228 (457)
T KOG1250|consen 151 MKIQRCRNLGATVILSGEDWDEAKAFAKRLAKE-NGLTYIPPFDHPDIWAGQ-GTIGLEILEQLKEPDGAIVVPVGGGGL 228 (457)
T ss_pred HHHHHHhccCCEEEEecccHHHHHHHHHHHHHh-cCceecCCCCCchhhcCc-chHHHHHHHhhcCCCCeEEEecCCchh
Confidence 367778999999999999999999999999887 699999999999999995 999999999999666799999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccC-CCCccccccCCCCCc---HhhHhhcCCeE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKN-PFDTITEGIGINRLT---QNFMMAKLDGA 196 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~-~~~t~a~gi~~~~~~---~~~~~~~~d~~ 196 (282)
++||+.|+|+..|+++|||||+++|+ +..+++.| +++.. ...++++|+++..+. ..+.+...|++
T Consensus 229 iaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g----------~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v 298 (457)
T KOG1250|consen 229 IAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAG----------KPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV 298 (457)
T ss_pred HHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcC----------CeeecccccchhcccccchhhHHHHHHHHhcCceE
Confidence 99999999999999999999999999 45666654 55543 367899999987663 34557889999
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
+.|+|+++..++..+...+.+++||+||+++||++...-...++++||.+++|+|..
T Consensus 299 vvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~ilsG~n~~ 355 (457)
T KOG1250|consen 299 VVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSILSGGNID 355 (457)
T ss_pred EEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccccccCCceEEeecccCCCC
Confidence 999999999999999999999999999999999998832234788999999999764
No 52
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.5e-33 Score=259.09 Aligned_cols=203 Identities=17% Similarity=0.239 Sum_probs=171.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG 120 (282)
.|+++|+.|||+|+.++++++++.+.+.+++++ . ++|++||+||.+++| |.++++||++|+++ .||+||+|+|+||
T Consensus 107 ~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~-~-~~~~~~~~n~~~~~g-~~t~~~Ei~~q~~~~~~d~vv~~vGtGg 183 (324)
T cd01563 107 GKLAQALAYGATVLAVEGNFDDALRLVRELAEE-N-WIYLSNSLNPYRLEG-QKTIAFEIAEQLGWEVPDYVVVPVGNGG 183 (324)
T ss_pred HHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHh-c-CeeccCCCCcceecc-hhhhHHHHHHHcCCCCCCEEEEecCCcH
Confidence 577889999999999999999999999988766 3 889999999999997 69999999999985 6999999999999
Q ss_pred HHHHHHHHHHhcC------CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc---H--hh
Q 038224 121 TVAGVSRFLQENN------PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT---Q--NF 188 (282)
Q Consensus 121 ~~aGi~~g~k~~~------~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~---~--~~ 188 (282)
|++|++.+|+++. |.++||+|||.+++ ++.+++.|.... .. .....++++|++++.++ . ..
T Consensus 184 ~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~------~~-~~~~~t~~~gl~~~~~~~~~~~~~~ 256 (324)
T cd01563 184 NITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDI------EP-VENPETIATAIRIGNPASGPKALRA 256 (324)
T ss_pred HHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCcc------Cc-CCCCCceeeeeecCCCCCHHHHHHH
Confidence 9999999999875 57999999999986 667776552110 01 12357888998876442 1 22
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcch
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRH 254 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky 254 (282)
.....++++.|+|+|++++++.|++++|+++||+||+++++++++.++ +.++++||+|+||+|.|+
T Consensus 257 ~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 257 VRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 345678999999999999999999999999999999999999998865 457889999999999874
No 53
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.7e-33 Score=267.40 Aligned_cols=199 Identities=13% Similarity=0.172 Sum_probs=167.8
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhH
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG 120 (282)
..|+++|+.|||+|+.++++|+++.+.+.+++++ .++|++++++||++++| |+|+++||++|++ ||+||+|+|+||
T Consensus 148 ~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~-~~~~~~~~~~np~~~eG-~~t~a~Ei~eq~~--pD~vv~pvG~Gg 223 (442)
T PRK05638 148 KGKLIQMIAFGAKIIRYGESVDEAIEYAEELARL-NGLYNVTPEYNIIGLEG-QKTIAFELWEEIN--PTHVIVPTGSGS 223 (442)
T ss_pred HHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHh-CCeEecCCCCChhHhhh-HHHHHHHHHHHHC--cCEEEEeCCchH
Confidence 3688999999999999999999999999998766 67899999999999998 6999999999997 999999999999
Q ss_pred HHHHHHHHHHhcCC------CcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH-----hh
Q 038224 121 TVAGVSRFLQENNP------NIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ-----NF 188 (282)
Q Consensus 121 ~~aGi~~g~k~~~~------~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~-----~~ 188 (282)
+++|++++|+++.+ .|+||+|||.+|+ +..++..+. .....+.++|+.+..+.. ..
T Consensus 224 ~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~------------~~~~~t~a~gl~~~~p~~~~~~~~~ 291 (442)
T PRK05638 224 YLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNK------------TKCNETKALGLYVKNPVMKEYVSEA 291 (442)
T ss_pred HHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCC------------CCCCCceeeeEeeCCCCCHHHHHHH
Confidence 99999999999765 3799999999886 666665431 113467788886544321 22
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhh
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~ 256 (282)
..++.+.++.|+|+++.++++.+++ +||++||+||+++||++++.++ +.++++||+|+||+|.|+..
T Consensus 292 i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~~ 360 (442)
T PRK05638 292 IKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGYG 360 (442)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCC
Confidence 3455678889999999999888874 8999999999999999999876 56789999999999999973
No 54
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=8.1e-33 Score=261.43 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=170.6
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC--------CCCEEE
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG--------ELDAFV 113 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~--------~pd~iv 113 (282)
.|+++|+.|||+|++++++|+++.+.|++++++.++++|+++ .|+.++..||+|+++||++|+++ .||+|+
T Consensus 189 ~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~ 267 (431)
T TIGR02035 189 WKKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVY 267 (431)
T ss_pred HHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEE
Confidence 699999999999999999999999999998876546778887 45555556799999999999963 477999
Q ss_pred EecChhHHHHHHHHHHHhc-CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcH---hh
Q 038224 114 AAAGTGGTVAGVSRFLQEN-NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQ---NF 188 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~-~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~---~~ 188 (282)
+|+|+||+++||+++||++ +|+++||+|||.+++ ++.+++.|...... . +.+.....|+++||+++.++. .+
T Consensus 268 vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~-~--~~~g~~~~T~AdGlav~~p~~~~~~~ 344 (431)
T TIGR02035 268 LPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKIS-V--QDIGIDNITAADGLAVGRPSGFVGRL 344 (431)
T ss_pred EEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCcccc-c--cccCCCCCceeccccCCCcchhHHHH
Confidence 9999999999999999997 889999999999998 66777665321100 0 001113478999999987643 33
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc-------C------CCCEEEEEecCCCcchh
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-------G------PGHTIVTILCDSGMRHL 255 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~-------~------~~~~Vv~v~tGgg~ky~ 255 (282)
....+|+++.|+|++++++++.|++++|+++|||||++++|+.++.+.- + ++.+.++++|||+.---
T Consensus 345 ~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p~ 424 (431)
T TIGR02035 345 MEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVPE 424 (431)
T ss_pred HHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCCCH
Confidence 3568999999999999999999999999999999999999998876531 1 46799999999987543
No 55
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.3e-32 Score=252.54 Aligned_cols=199 Identities=22% Similarity=0.295 Sum_probs=160.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCC-Ch-HHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFE-NL-ANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~-np-~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|+++|+.|||+|+.++++|+++...+.+++++ +++|++++++ || .+++| |+++++||++|++..||+||+|+|+|
T Consensus 100 ~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~n~~~~~~G-~~t~a~Ei~~ql~~~~D~vv~~vGtG 177 (319)
T PRK06381 100 SRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKE-NGIYDANPGSVNSVVDIEA-YSAIAYEIYEALGDVPDAVAVPVGNG 177 (319)
T ss_pred HHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHH-cCcEecCCCCCCcchHhhh-HHHHHHHHHHHhCCCCCEEEEcCCcc
Confidence 577899999999999999999999999988766 5788888885 77 67887 89999999999986799999999999
Q ss_pred HHHHHHHHHHHhc------CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCcccc-ccCCCC-----Cc-
Q 038224 120 GTVAGVSRFLQEN------NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITE-GIGINR-----LT- 185 (282)
Q Consensus 120 G~~aGi~~g~k~~------~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~-gi~~~~-----~~- 185 (282)
|+++|++++|+++ .|.++|++|||.+++ +..++..|.... ......++.+ .+..+. ..
T Consensus 178 gt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~ 249 (319)
T PRK06381 178 TTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEV--------VDLEVDEIRETAVNEPLVSYRSFDG 249 (319)
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcc--------cCCCcchhhhcccCCCcccccCCCH
Confidence 9999999999998 789999999999885 667776553210 0001122322 122111 11
Q ss_pred ---HhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 038224 186 ---QNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDS 250 (282)
Q Consensus 186 ---~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGg 250 (282)
.....++.+.++.|+|+|+++++++|++++||++||+||+++||++++.++...+++||+++|||
T Consensus 250 ~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~~~~vv~i~tGg 317 (319)
T PRK06381 250 DNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVITGR 317 (319)
T ss_pred HHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 12346677899999999999999999999999999999999999999987643358999999997
No 56
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.7e-32 Score=256.07 Aligned_cols=207 Identities=15% Similarity=0.190 Sum_probs=167.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecC-----CCCC--hHHHHhhhhcHHHHHHHHhCC----CCC
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD-----QFEN--LANFRAHYEGTGPEIWEQTGG----ELD 110 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~-----~~~n--p~~~~gh~~t~a~EI~eQl~~----~pd 110 (282)
.|+.+|+.|||+|++++++|+++.+.+.+++++ .++++++ +|+| |+.++| |+|+++||++|++. .||
T Consensus 131 ~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~-~g~~~~~~~~~~~~~~~~~~ii~G-~~Tia~Ei~eQl~~~~~~~pD 208 (376)
T TIGR01747 131 ERVENILNLGAECTITDMNYDDTVRLAMQMAQQ-HGWVVVQDTAWEGYEKIPTWIMQG-YATLADEAVEQLREMGSVTPT 208 (376)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHh-cCcEEeccccccccccCCchHHHH-HHHHHHHHHHHhhccCCCCCC
Confidence 689999999999999999999999999988765 5677776 4655 666666 89999999999973 699
Q ss_pred EEEEecChhHHHHHHHHHHHhcCC--CcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccC--CCCccccccCCCCC-
Q 038224 111 AFVAAAGTGGTVAGVSRFLQENNP--NIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKN--PFDTITEGIGINRL- 184 (282)
Q Consensus 111 ~ivvpvG~GG~~aGi~~g~k~~~~--~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~--~~~t~a~gi~~~~~- 184 (282)
+||+|+|+||+++|++.+|++..+ .++||+|||.+++ ++.++..+ .|+++.. ..+|+++||+++.+
T Consensus 209 ~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~--------~g~~~~~~~~~~Tiadgl~~~~~~ 280 (376)
T TIGR01747 209 HVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKK--------DGDIVNVGGDMATIMAGLACGEPN 280 (376)
T ss_pred EEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhc--------CCCeEEcCCCccccccccccCCcc
Confidence 999999999999999999987644 3699999999998 66776541 1233332 24799999998655
Q ss_pred --cHhhHhhcCCeEEEcCHHHHHHHHHHHHHhc----CceEecchHHHHHHHHHHH---------Hh--cCCCCEEEEEe
Q 038224 185 --TQNFMMAKLDGAFRGTDREAVEMSRFLVKND----GLFLGSSSAMNCVGAVRVA---------QS--LGPGHTIVTIL 247 (282)
Q Consensus 185 --~~~~~~~~~d~~~~V~d~e~~~a~~~la~~e----Gi~~epssaaalaal~~l~---------~~--~~~~~~Vv~v~ 247 (282)
++.+.++..+.++.|+|+++.+||+.|++.. ++++||+||+++|++...+ ++ +.++++||+|+
T Consensus 281 ~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~ 360 (376)
T TIGR01747 281 PISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS 360 (376)
T ss_pred hHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe
Confidence 4566678899999999999999999999855 5999999999998888432 22 45678999999
Q ss_pred cCCCcchhhhhc
Q 038224 248 CDSGMRHLSKFY 259 (282)
Q Consensus 248 tGgg~ky~~~~~ 259 (282)
|||+ .+.+.|.
T Consensus 361 t~gn-~d~~~~~ 371 (376)
T TIGR01747 361 TEGD-TDPDHYR 371 (376)
T ss_pred CCCC-CCHHHHH
Confidence 9984 4566553
No 57
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.3e-32 Score=258.46 Aligned_cols=209 Identities=13% Similarity=0.121 Sum_probs=168.4
Q ss_pred HHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHHHHHH
Q 038224 47 VDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVS 126 (282)
Q Consensus 47 ~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~ 126 (282)
++.|||+|+.++|+|+++.+.+.+++++ ++++.+++++||+.++| ++|+++||++|+++.||+||+|+|+|+++.|++
T Consensus 159 ~~~~ga~vv~v~g~~d~a~~~a~~~a~~-~g~~~~~~~~~p~~ieG-~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~ 236 (398)
T TIGR03844 159 EPASSVLLVTVDGDYTDAIALADRIATL-PGFVPEGGARNVARRDG-MGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAW 236 (398)
T ss_pred hhCCcEEEEECCCCHHHHHHHHHHHHHh-CCccccCCCCCHHHHhh-HHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHH
Confidence 4789999999999999999999998766 46655677889999998 799999999999845999999999999999999
Q ss_pred HHHHhcC-------CCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccc-cCCCCccccccCCCCCcH-------hhHh
Q 038224 127 RFLQENN-------PNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRL-KNPFDTITEGIGINRLTQ-------NFMM 190 (282)
Q Consensus 127 ~g~k~~~-------~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v-~~~~~t~a~gi~~~~~~~-------~~~~ 190 (282)
++|+++. .-|++++||+++|+ +.++|+.|............. ....+|+++|+.+..++. ...+
T Consensus 237 ~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air 316 (398)
T TIGR03844 237 EAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALI 316 (398)
T ss_pred HHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHH
Confidence 9998742 33699999999997 888988764211000000000 000157899997654432 3336
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchhhh
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
++.+.++.|+|+|+.+|++.|++++|+++||+||+++||++++.++ +.++++||+|+||+|+|++..
T Consensus 317 ~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 317 ATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred HhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 7889999999999999999999999999999999999999998865 667899999999999998864
No 58
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.2e-32 Score=256.50 Aligned_cols=206 Identities=17% Similarity=0.231 Sum_probs=166.2
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC---C-----CCEEE
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG---E-----LDAFV 113 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~---~-----pd~iv 113 (282)
.|+++|+.|||+|++++++|+++.+.+.+++++.++++|++|+++|..++ ||+|+|+||++|+++ + ||+||
T Consensus 171 ~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~ia-G~~T~g~EI~eQl~~~~~~vD~~~Pd~Vv 249 (404)
T cd06447 171 WKKDKLRSKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFL-GYAVAASRLKAQLAELGIKVDAEHPLFVY 249 (404)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHh-hHHHHHHHHHHHhhhccCccccCCCCEEE
Confidence 78999999999999999999999999999887655678999977776665 589999999999972 2 56899
Q ss_pred EecChhHHHHHHHHHHHhc-CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc---Hhh
Q 038224 114 AAAGTGGTVAGVSRFLQEN-NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT---QNF 188 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~-~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~---~~~ 188 (282)
+|+|+||+++|++++||++ .|+++||+|||.+++ +..+++.|...... . +.+.....|+++||+++.+. +.+
T Consensus 250 vpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~-~--~~~g~~~~TiadGl~~~~p~~~~~~~ 326 (404)
T cd06447 250 LPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKIS-V--QDIGIDNRTAADGLAVGRPSGLVGKL 326 (404)
T ss_pred EecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCcccc-c--cccCCCccchhhhhcCCCcchhHHHH
Confidence 9999999999999999997 788999999999998 54666655321100 0 00001257899999987653 334
Q ss_pred HhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc--------C---CCCEEEEEecCCC
Q 038224 189 MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL--------G---PGHTIVTILCDSG 251 (282)
Q Consensus 189 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~--------~---~~~~Vv~v~tGgg 251 (282)
....+|+++.|+|+|+.++++.|++++|+++|||||++++|++++++++ + .+.+-+++.||+.
T Consensus 327 ~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T cd06447 327 MEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEAEGKRYVRLGYRMENATHIVWATGGS 400 (404)
T ss_pred HHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhhhHHHhcCccccccCceEEEEccCCC
Confidence 4678999999999999999999999999999999999999999997642 1 3445667777764
No 59
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=7.7e-32 Score=251.51 Aligned_cols=215 Identities=17% Similarity=0.167 Sum_probs=159.1
Q ss_pred hHHHHHhcCCeEEEeCC---ChhHHHHHhccC-cccC-CCcEecCCC----CChHHHHhhhhcHHHHHHHHhCC----CC
Q 038224 43 RRRAVDKDGKELEHING---YGSDGAIQSSKF-PSDC-TGGFFADQF----ENLANFRAHYEGTGPEIWEQTGG----EL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g---~~~~a~~~a~~~-~~~~-~~~~~~~~~----~np~~~~gh~~t~a~EI~eQl~~----~p 109 (282)
|+.+|+.|||+|+.+++ +++++...+.+. .... +.+|+++++ .++.++..||+++++||++|+++ .|
T Consensus 124 ~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~ 203 (365)
T cd06446 124 NVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELP 203 (365)
T ss_pred hHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCC
Confidence 56689999999999995 457776444433 2221 234444432 23446778899999999999973 69
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhh-----hhhccccchh----hhhcCcc--ccCCCCccccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFN-----KVTRGVMYTK----EEAEGRR--LKNPFDTITEG 178 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~-----~~~~g~~~~~----~~~~g~~--v~~~~~t~a~g 178 (282)
|+||+|+|+|||++|++++|++ .++++||+|||.+|+.+. ++..|..... ....+.. -.....|+++|
T Consensus 204 D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~g 282 (365)
T cd06446 204 DVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAG 282 (365)
T ss_pred CEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCccccccc
Confidence 9999999999999999999987 468999999999987432 2332221000 0000000 01245688899
Q ss_pred cCCCCC-cH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchh
Q 038224 179 IGINRL-TQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHL 255 (282)
Q Consensus 179 i~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~ 255 (282)
++...+ +. .+....+|+++.|+|++++++++.|++++||++||+||+++++++++.++++++++||+|+||+|+||+
T Consensus 283 l~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~~~~~~Vv~i~~g~G~k~~ 362 (365)
T cd06446 283 LDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDL 362 (365)
T ss_pred ccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhcCCCCeEEEEeCCCCcccc
Confidence 886432 22 244567899999999999999999999999999999999999999998877668899999999999998
Q ss_pred hhh
Q 038224 256 SKF 258 (282)
Q Consensus 256 ~~~ 258 (282)
+++
T Consensus 363 ~~~ 365 (365)
T cd06446 363 QTV 365 (365)
T ss_pred ccC
Confidence 864
No 60
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-32 Score=232.53 Aligned_cols=198 Identities=17% Similarity=0.258 Sum_probs=177.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
-|...|+.|||+|+.++-+.++....|.++.++ .+++.++||++|..+.| +.|+++|++||.+ ++|++|+|+|+||+
T Consensus 110 ~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee-~g~~~i~Py~~p~vIaG-qgTiA~ElleqVg-~iDalfvpvgGGGl 186 (323)
T KOG1251|consen 110 CKVAATRGYGANIIFCEPTVESRESVAKDLTEE-TGYYLIHPYNHPSVIAG-QGTIALELLEQVG-EIDALFVPVGGGGL 186 (323)
T ss_pred HHHHHHHhcCceEEEecCccchHHHHHHHHHHh-cCcEEeCCCCCcceeec-cchHHHHHHHhhC-ccceEEEeecCcch
Confidence 378999999999999999999999999999766 78999999999999988 6999999999999 89999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCC---CCcHhhHhhcCCeEE
Q 038224 122 VAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGIN---RLTQNFMMAKLDGAF 197 (282)
Q Consensus 122 ~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~---~~~~~~~~~~~d~~~ 197 (282)
++|++...+.+.|+++|++|||++.. .++++..|... . ..+++|+++|.... ...|++.++.+|+++
T Consensus 187 lSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~--------~-l~tp~TIADG~r~~~lG~~t~pIir~~vddi~ 257 (323)
T KOG1251|consen 187 LSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIV--------H-LDTPKTIADGVRTSHLGPLTWPIIRDLVDDIL 257 (323)
T ss_pred hhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeE--------e-cCCchhhhhhhhhccccccchHHHHHHhhhhe
Confidence 99999999999999999999999887 78887766321 1 23689999999865 347888899999999
Q ss_pred EcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCc
Q 038224 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGM 252 (282)
Q Consensus 198 ~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ 252 (282)
+|+|+|+.++++.++.+..+.+||+++.++||++....++ ..+++.+|+||||.
T Consensus 258 Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~-~~K~igIiLsGGNV 311 (323)
T KOG1251|consen 258 TVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL-NIKRIGIILSGGNV 311 (323)
T ss_pred eecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh-ccCceEEEEeCCcc
Confidence 9999999999999999999999999999999998776543 47899999999865
No 61
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.98 E-value=1e-31 Score=247.33 Aligned_cols=202 Identities=16% Similarity=0.173 Sum_probs=163.1
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCC--hHHHHhhhhcHHHHHHHHhCC-CCCEEEEecCh
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFEN--LANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGT 118 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~n--p~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~ 118 (282)
+|+.+|+.|||+|+.++++|+++.+.+.++.++. ++++.+ ..| |.+++| |.++++||++|+++ .||+||+|+|+
T Consensus 109 ~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~n~~~~~~~g-~~t~~~Ei~~q~~~~~~d~iv~~vG~ 185 (328)
T TIGR00260 109 GKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDK-EALGLN-SVNSIPYRLEG-QKTYAFEAVEQLGWEAPDKVVVPVPN 185 (328)
T ss_pred HHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhc-Ceeecc-cCCCCCeEeee-ehhHHHHHHHHhCCCCCCEEEEECCC
Confidence 5788899999999999999999999999887653 445544 445 888998 48999999999986 79999999999
Q ss_pred hHHHHHHHHHHHhcCC-----CcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccC-CCCccccccCCCCCc-----H
Q 038224 119 GGTVAGVSRFLQENNP-----NIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKN-PFDTITEGIGINRLT-----Q 186 (282)
Q Consensus 119 GG~~aGi~~g~k~~~~-----~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~-~~~t~a~gi~~~~~~-----~ 186 (282)
||+++|++.+|+++.. .+++++|||.+++ ++..+..+ ++.... ...|+++++++..+. .
T Consensus 186 GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~---------g~~~~~~~~~t~~~~l~~~~p~~~~~~~ 256 (328)
T TIGR00260 186 SGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLES---------GQWEPIEDPATLSTAIDIGNPANWERAL 256 (328)
T ss_pred cchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcC---------CCcCcCCCCCccCcceecCCCCCHHHHH
Confidence 9999999999998411 2399999999994 66665322 111111 236788888765431 1
Q ss_pred hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh--cCCCCEEEEEecCCCcchh
Q 038224 187 NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHL 255 (282)
Q Consensus 187 ~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~--~~~~~~Vv~v~tGgg~ky~ 255 (282)
.+...+.++.+.|+|+|++++++.|++++|+++||+||+++++++++.++ +.++++||+++||++.|+.
T Consensus 257 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~ 327 (328)
T TIGR00260 257 ELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDP 327 (328)
T ss_pred HHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCC
Confidence 22356789999999999999999999999999999999999999998864 5577899999999999975
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.97 E-value=5.2e-31 Score=247.68 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=163.5
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecC-----CCCC--hHHHHhhhhcHHHHHHHHhC----CCCC
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD-----QFEN--LANFRAHYEGTGPEIWEQTG----GELD 110 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~-----~~~n--p~~~~gh~~t~a~EI~eQl~----~~pd 110 (282)
.|+.+|+.|||+|+.++++|+++.+.+.+++++ ++++|++ +|+| |..++ ||+|+++||++|++ ..||
T Consensus 150 ~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~-~g~~~v~~~~~~~~~~~~~~~i~-G~~Tig~EI~eQl~~~~~~~pD 227 (396)
T TIGR03528 150 IRLENIRAEGAECTITDLNYDDAVRLAWKMAQE-NGWVMVQDTAWEGYEKIPTWIMQ-GYGTLALEALEQLKEQGVEKPT 227 (396)
T ss_pred HHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHh-cCcEeeccccccccccCchHHHH-HHhHHHHHHHHHHhhcCCCCCC
Confidence 588999999999999999999999999998766 5788875 6765 54445 58999999999997 2699
Q ss_pred EEEEecChhHHHHHHHHHHHhc-CCC-cEEEEEcCCCCc-hhhhhhccccchhhhhcCccccC--CCCccccccCCCCC-
Q 038224 111 AFVAAAGTGGTVAGVSRFLQEN-NPN-IKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKN--PFDTITEGIGINRL- 184 (282)
Q Consensus 111 ~ivvpvG~GG~~aGi~~g~k~~-~~~-~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~--~~~t~a~gi~~~~~- 184 (282)
+||+|+|+||+++|++.+|++. .+. ++||+|||++++ ++.+++.+ .|+++.. ..+|+++|++++.+
T Consensus 228 ~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~--------~g~~~~~~g~~~Tiadgl~~~~p~ 299 (396)
T TIGR03528 228 HVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIAD--------DGKPHFVTGDMATIMAGLACGEPN 299 (396)
T ss_pred EEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhc--------CCCEEEeCCCccceecccccCCcc
Confidence 9999999999999999999654 443 599999999987 66776541 1233322 34789999987554
Q ss_pred --cHhhHhhcCCeEEEcCHHHHHHHHHHHHH----hcCceEecchHHHHHHHHHH---------HHh--cCCCCEEEEEe
Q 038224 185 --TQNFMMAKLDGAFRGTDREAVEMSRFLVK----NDGLFLGSSSAMNCVGAVRV---------AQS--LGPGHTIVTIL 247 (282)
Q Consensus 185 --~~~~~~~~~d~~~~V~d~e~~~a~~~la~----~eGi~~epssaaalaal~~l---------~~~--~~~~~~Vv~v~ 247 (282)
++.+.++..|+++.|+|+|+.++++.|++ ++++++|||||+++|++..+ .++ +.++++||+|+
T Consensus 300 ~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~ 379 (396)
T TIGR03528 300 TIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS 379 (396)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE
Confidence 34455778999999999999999999998 57999999999999655332 222 34578999999
Q ss_pred cCCCcchhhhh
Q 038224 248 CDSGMRHLSKF 258 (282)
Q Consensus 248 tGgg~ky~~~~ 258 (282)
||||. +.+.|
T Consensus 380 tggn~-d~~~~ 389 (396)
T TIGR03528 380 TEGDT-DPDNY 389 (396)
T ss_pred CCCCC-CHHHH
Confidence 99754 66655
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=99.97 E-value=1.5e-30 Score=244.19 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=158.0
Q ss_pred hHHHHHhcCCeEEEeCC---ChhHHHHHh-ccCcccCCCcEec-CCCCC----hHHHHhhhhcHHHHHHHHhC----CCC
Q 038224 43 RRRAVDKDGKELEHING---YGSDGAIQS-SKFPSDCTGGFFA-DQFEN----LANFRAHYEGTGPEIWEQTG----GEL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g---~~~~a~~~a-~~~~~~~~~~~~~-~~~~n----p~~~~gh~~t~a~EI~eQl~----~~p 109 (282)
|+.+|+.|||+|+.+++ .++++...+ .+++++.++.+|+ +++.| |.++..|++|+++||++|+. ..|
T Consensus 140 ~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~p 219 (385)
T TIGR00263 140 NVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLP 219 (385)
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCC
Confidence 46789999999999984 477875433 3444332344454 44432 35666778999999999984 258
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCch-----hhhhhccccc--------hhhhhcCccccCCCCccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSL-----FNKVTRGVMY--------TKEEAEGRRLKNPFDTIT 176 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~-----~~~~~~g~~~--------~~~~~~g~~v~~~~~t~a 176 (282)
|+||+|+|+||+++|++.+|.. .|+++||+|||.++.. ...+..|... .....++ .+ ....|++
T Consensus 220 D~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~tia 296 (385)
T TIGR00263 220 DAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDG-QI-LEAHSVS 296 (385)
T ss_pred CEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCC-cc-cccceee
Confidence 9999999999999999999865 6899999999998632 2233333210 0000001 11 1346788
Q ss_pred cccCCCCC-cH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 177 EGIGINRL-TQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 177 ~gi~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
+|++.... |. .+.....++++.|+|+|++++++.|++++||++||+||++++++++++++++++++||+++||+|++
T Consensus 297 ~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~~~~Vv~i~~g~G~~ 376 (385)
T TIGR00263 297 AGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNLSGRGDK 376 (385)
T ss_pred ccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcC
Confidence 88876543 22 2334457789999999999999999999999999999999999999988787889999999999999
Q ss_pred hhhhh
Q 038224 254 HLSKF 258 (282)
Q Consensus 254 y~~~~ 258 (282)
|++++
T Consensus 377 d~~~~ 381 (385)
T TIGR00263 377 DIFTI 381 (385)
T ss_pred CHHHH
Confidence 99976
No 64
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.97 E-value=1.5e-30 Score=230.08 Aligned_cols=157 Identities=32% Similarity=0.540 Sum_probs=146.9
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGG 120 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG 120 (282)
.|+++|+.+||+|+.++++|+++...+.+++++.++++|++||+||.+++|| .++++||++|+++ .||+||+|+|+||
T Consensus 87 ~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~-~~~~~Ei~~q~~~~~~d~ivvp~GtGg 165 (244)
T cd00640 87 EKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQ-GTIGLEILEQLGGQKPDAVVVPVGGGG 165 (244)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCccH
Confidence 5788999999999999999999999999987765679999999999999995 7999999999997 6999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHhhHhhcCCeEEEcC
Q 038224 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGT 200 (282)
Q Consensus 121 ~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~~~~~~~d~~~~V~ 200 (282)
+++|++.+|++.+|.+|||+||| +++.|+
T Consensus 166 ~~~G~~~~~~~~~~~~~ii~v~~---------------------------------------------------~~~~v~ 194 (244)
T cd00640 166 NIAGIARALKELLPNVKVIGVEP---------------------------------------------------EVVTVS 194 (244)
T ss_pred HHHHHHHHHHHhCCCCEEEEEee---------------------------------------------------eEEEEC
Confidence 99999999999999999999985 778999
Q ss_pred HHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 038224 201 DREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDS 250 (282)
Q Consensus 201 d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGg 250 (282)
|++++++++.|++.+|+++||+||++++++.++.++.+++++||+++||+
T Consensus 195 d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~~~~~vv~v~tg~ 244 (244)
T cd00640 195 DEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244 (244)
T ss_pred HHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999988776789999999996
No 65
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=7.8e-30 Score=239.22 Aligned_cols=217 Identities=18% Similarity=0.220 Sum_probs=162.0
Q ss_pred hHHHHHhcCCeEEEeCC---ChhHHHHHhcc-CcccCCCcEecC-C----CCChHHHHhhhhcHHHHHHHHhC----CCC
Q 038224 43 RRRAVDKDGKELEHING---YGSDGAIQSSK-FPSDCTGGFFAD-Q----FENLANFRAHYEGTGPEIWEQTG----GEL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g---~~~~a~~~a~~-~~~~~~~~~~~~-~----~~np~~~~gh~~t~a~EI~eQl~----~~p 109 (282)
++..|+.|||+|+.++. +++++...|.+ +++..++.+|+. + ...|.++..|++++++||.+|+. ..|
T Consensus 152 nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~p 231 (402)
T PRK13028 152 NVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLP 231 (402)
T ss_pred HHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCC
Confidence 45689999999999974 89999888855 444423455552 2 22355666668999999999973 359
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCC----Cc-hhhhhhcccc--------chhhhhcCccccCCCCccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPG----SS-LFNKVTRGVM--------YTKEEAEGRRLKNPFDTIT 176 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~----~~-~~~~~~~g~~--------~~~~~~~g~~v~~~~~t~a 176 (282)
|+||+|+|+||+++|++.+|++ .|+++||||||.+ ++ ....+..|.. +...+..|++ ....+++
T Consensus 232 D~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~--~~~~sia 308 (402)
T PRK13028 232 DAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEP--APVHSIA 308 (402)
T ss_pred CEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCc--CCcccee
Confidence 9999999999999999999986 4889999999988 21 1122222211 0001111221 1246788
Q ss_pred cccCCCCC-cHh--hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 177 EGIGINRL-TQN--FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 177 ~gi~~~~~-~~~--~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
.|+..+.+ |.. +.....++++.|+|+|++++++.|+++|||+++|+||+++|++++++++++++++||+++||+|+|
T Consensus 309 ~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~~~~~VVv~lsG~G~k 388 (402)
T PRK13028 309 AGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNLSGRGDK 388 (402)
T ss_pred ccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcCCCCeEEEEECCCCcc
Confidence 88876443 332 223445789999999999999999999999999999999999999988887889999999999999
Q ss_pred hhhhhcChhHH
Q 038224 254 HLSKFYDVHYL 264 (282)
Q Consensus 254 y~~~~~~~~w~ 264 (282)
|++++. .|+
T Consensus 389 d~~~~~--~~~ 397 (402)
T PRK13028 389 DIDYVA--EML 397 (402)
T ss_pred CHHHHH--HHh
Confidence 999884 455
No 66
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.97 E-value=6.5e-30 Score=239.38 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=161.9
Q ss_pred hHHHHHhcCCeEEEeCC---ChhHHHHHhcc-CcccCCCcEec-CCCC----ChHHHHhhhhcHHHHHHHHhC----CCC
Q 038224 43 RRRAVDKDGKELEHING---YGSDGAIQSSK-FPSDCTGGFFA-DQFE----NLANFRAHYEGTGPEIWEQTG----GEL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g---~~~~a~~~a~~-~~~~~~~~~~~-~~~~----np~~~~gh~~t~a~EI~eQl~----~~p 109 (282)
++..|+.+||+|+.++. +++|+..++.+ ++.+.++.+|+ .++. .|.++..||+++++||++|+. ..|
T Consensus 148 nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~p 227 (397)
T PRK04346 148 NVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLP 227 (397)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCC
Confidence 45679999999999984 78888776665 44442333443 3222 245566679999999999985 269
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCch-----hhhhhcccc--------chhhhhcCccccCCCCccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSL-----FNKVTRGVM--------YTKEEAEGRRLKNPFDTIT 176 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~-----~~~~~~g~~--------~~~~~~~g~~v~~~~~t~a 176 (282)
|+||+|+|+||+++|++.+|++ .|.++||||||.++.+ ..++..|.. +...+.+|+ + .+..+++
T Consensus 228 D~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~-~-~~~~sis 304 (397)
T PRK04346 228 DAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQ-I-LETHSIS 304 (397)
T ss_pred CEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCc-c-CCCceee
Confidence 9999999999999999999976 7899999999998632 223333311 001111222 1 2356788
Q ss_pred cccCCCCC-cH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 177 EGIGINRL-TQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 177 ~gi~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
.|+..+.+ |. .+.....++++.|+|+|++++++.|+++|||+++++||.++|++++++++++++++||+++||+|+|
T Consensus 305 ~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~~~~~Vvv~lsGrG~k 384 (397)
T PRK04346 305 AGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNLSGRGDK 384 (397)
T ss_pred ccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcCCCCeEEEEeCCCCcc
Confidence 88866544 22 2234456689999999999999999999999999999999999999988787889999999999999
Q ss_pred hhhhhcChhHH
Q 038224 254 HLSKFYDVHYL 264 (282)
Q Consensus 254 y~~~~~~~~w~ 264 (282)
|++++. .|+
T Consensus 385 d~~~~~--~~~ 393 (397)
T PRK04346 385 DVFTVA--KLL 393 (397)
T ss_pred CHHHHH--HHh
Confidence 999883 455
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=99.97 E-value=1.8e-29 Score=236.96 Aligned_cols=214 Identities=16% Similarity=0.229 Sum_probs=159.3
Q ss_pred hHHHHHhcCCeEEEe---CCChhHHHHHh-ccCccc-CCCcEecCCCC--C--hHHHHhhhhcHHHHHHHHh----CCCC
Q 038224 43 RRRAVDKDGKELEHI---NGYGSDGAIQS-SKFPSD-CTGGFFADQFE--N--LANFRAHYEGTGPEIWEQT----GGEL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~---~g~~~~a~~~a-~~~~~~-~~~~~~~~~~~--n--p~~~~gh~~t~a~EI~eQl----~~~p 109 (282)
++.+|+.|||+|+.+ +++++||..++ ++++++ +..+|++++.. + |..+..+++++|.||.+|+ +..|
T Consensus 161 nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~p 240 (410)
T PLN02618 161 NVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKP 240 (410)
T ss_pred hHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCC
Confidence 456899999999999 88999998444 446554 23344433221 2 3333345799999998876 3369
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-----hhhhhhcccc--------chhhhhcCccccCCCCccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-----LFNKVTRGVM--------YTKEEAEGRRLKNPFDTIT 176 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-----~~~~~~~g~~--------~~~~~~~g~~v~~~~~t~a 176 (282)
|+||+|+|+||+++|++.+|+. .|+++||||||.++. ....+..|.. +-..+..|+. .+..+++
T Consensus 241 D~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~--~~~~sia 317 (410)
T PLN02618 241 DVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQI--IEPHSIS 317 (410)
T ss_pred CEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCC--CCCcchh
Confidence 9999999999999999999975 689999999999873 1233333311 0000111111 2456788
Q ss_pred cccCCCCC-cH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 177 EGIGINRL-TQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 177 ~gi~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
+|+..+.+ +. .+.....++++.|+|+|++++++.|+++|||+++++|+++++++++++++++++++||+++||+|.|
T Consensus 318 ~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~K 397 (410)
T PLN02618 318 AGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDK 397 (410)
T ss_pred hhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcC
Confidence 88876543 22 1223357899999999999999999999999999999999999999998888899999999999999
Q ss_pred hhhhhc
Q 038224 254 HLSKFY 259 (282)
Q Consensus 254 y~~~~~ 259 (282)
|++++.
T Consensus 398 d~~~v~ 403 (410)
T PLN02618 398 DVNTAI 403 (410)
T ss_pred CHHHHH
Confidence 999874
No 68
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.97 E-value=1.4e-30 Score=238.31 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=153.7
Q ss_pred HhHHHHHhcCCeEEEeCC-ChhHHHHHhccCcc----c-CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC--CCCEEE
Q 038224 42 KRRRAVDKDGKELEHING-YGSDGAIQSSKFPS----D-CTGGFFADQFENLANFRAHYEGTGPEIWEQTGG--ELDAFV 113 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g-~~~~a~~~a~~~~~----~-~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~--~pd~iv 113 (282)
+++.+|+.|||+|+.+++ +|+++.+.+.++++ . .+.+++++++.||.+..|| .++++||++|+++ .||+||
T Consensus 96 ~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~-~~~~~EI~~q~~~~~~~D~vv 174 (311)
T TIGR01275 96 GNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGY-VEAVLEIATQLESEVKFDSIV 174 (311)
T ss_pred CCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHH-HHHHHHHHHHHhcCCCCCEEE
Confidence 456778999999999996 67776655555432 2 1357788999999999996 5699999999974 699999
Q ss_pred EecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc--hhhhhhccccchhhhhcCccccCCCCccccccCCCC-CcHhhHh
Q 038224 114 AAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS--LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINR-LTQNFMM 190 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~--~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~-~~~~~~~ 190 (282)
+|+|+|||++|++++||+++|+++||||||..+. ....+ ....+++++|++.+. .......
T Consensus 175 ~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~----------------~~~~~~~~~g~~~~~~~~~~~~~ 238 (311)
T TIGR01275 175 VAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKF----------------VNLVKEIAEGLEVKASEVIPELD 238 (311)
T ss_pred EeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHH----------------HHHHHHHHHHhCCCCCCCEEEEC
Confidence 9999999999999999999999999999987653 11111 012245677776542 2233335
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEecc-hHHHHHHHHHHHHhcC-CCCEEEEEecCCCcc
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGSS-SAMNCVGAVRVAQSLG-PGHTIVTILCDSGMR 253 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps-saaalaal~~l~~~~~-~~~~Vv~v~tGgg~k 253 (282)
+..+..+.|+|+|++++++.|++++||++||+ ||++++++++++++.. ++++||+|+|||+..
T Consensus 239 ~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g 303 (311)
T TIGR01275 239 DYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISG 303 (311)
T ss_pred CcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCccc
Confidence 56778899999999999999999999999995 9999999999876532 367899999999764
No 69
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.97 E-value=1.7e-29 Score=238.57 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=157.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhHH------------------HHHhccCcccCC-CcEecCCCCChHHHHhhhhcHHHHHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDG------------------AIQSSKFPSDCT-GGFFADQFENLANFRAHYEGTGPEIW 102 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a------------------~~~a~~~~~~~~-~~~~~~~~~np~~~~gh~~t~a~EI~ 102 (282)
.|+.+|+.|||+|+.++++++++ +++|.+.+.+.+ ..|+++++.|+ +..|+.++|+||+
T Consensus 158 ~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~ 235 (419)
T TIGR01415 158 YRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAK 235 (419)
T ss_pred HHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHH
Confidence 57789999999999999998775 344555543323 45667777664 3457899999999
Q ss_pred HHhCC---CCCEEEEecChhHHHHHHHHHHHhc----CCCcEEEEEcCCCCc-hhhhhhccc------cchh--hhhcCc
Q 038224 103 EQTGG---ELDAFVAAAGTGGTVAGVSRFLQEN----NPNIKCFLIDPPGSS-LFNKVTRGV------MYTK--EEAEGR 166 (282)
Q Consensus 103 eQl~~---~pd~ivvpvG~GG~~aGi~~g~k~~----~~~~~iigVe~~~~~-~~~~~~~g~------~~~~--~~~~g~ 166 (282)
+|+++ .||+||+|+|+||+++|++.+|.+. .+++|||+|||.+|+ +..++...+ .... ...-|.
T Consensus 236 ~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~ 315 (419)
T TIGR01415 236 KQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGH 315 (419)
T ss_pred HHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCC
Confidence 99974 4999999999999999999998432 357999999999998 444331100 0000 000011
Q ss_pred cccCCCCccccccCCCCCcH---hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc---CCC
Q 038224 167 RLKNPFDTITEGIGINRLTQ---NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL---GPG 240 (282)
Q Consensus 167 ~v~~~~~t~a~gi~~~~~~~---~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~---~~~ 240 (282)
.+ .+..+.+.|+....+.. .+....+.+.+.|+|+|+++++++|++++||++||+||++++++++++++. +.+
T Consensus 316 ~~-~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~ 394 (419)
T TIGR01415 316 DF-IPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEE 394 (419)
T ss_pred CC-CCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCC
Confidence 00 13455666776543322 122344457889999999999999999999999999999999999988763 233
Q ss_pred CEEEEEecCCCcchhhhhcChhHHh
Q 038224 241 HTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 241 ~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
++||+++||+|+++++.| .+|+.
T Consensus 395 ~vvv~~lsG~G~~d~~~y--~~~~~ 417 (419)
T TIGR01415 395 KVILFNLSGHGLLDLKAY--AKYLH 417 (419)
T ss_pred eEEEEEcCCCCcCCHHHH--HHHhc
Confidence 478899999999998876 45654
No 70
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.97 E-value=3.5e-30 Score=235.23 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=148.2
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHH----HH-hccCcccC-CCcEecCCCC-ChHHHHhhhhcHHHHHHHHhCC---CCCE
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGA----IQ-SSKFPSDC-TGGFFADQFE-NLANFRAHYEGTGPEIWEQTGG---ELDA 111 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~----~~-a~~~~~~~-~~~~~~~~~~-np~~~~gh~~t~a~EI~eQl~~---~pd~ 111 (282)
.|+.+|+.|||+|+.+++++++.. .. +.++.+.. ..|++++++. ||.++.| |.++++||++|+++ .||+
T Consensus 99 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~t~~~Ei~~q~~~~~~~~d~ 177 (307)
T cd06449 99 GNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLG-YVGFVLEIAQQEEELGFKFDS 177 (307)
T ss_pred ccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHH-HHHHHHHHHHHHHhcCCCCCE
Confidence 367789999999999999876522 22 22222221 2355677764 9999998 69999999999975 6999
Q ss_pred EEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccc-cccCCCCCcHhhH
Q 038224 112 FVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTIT-EGIGINRLTQNFM 189 (282)
Q Consensus 112 ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a-~gi~~~~~~~~~~ 189 (282)
||+|+|+|||++|++++|++++|+++||+|||.+++ +..+-. +.....++. .|+..+..+..+.
T Consensus 178 vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~ 243 (307)
T cd06449 178 IVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQV--------------LRIAQAKLAEEGLEVKEEDVVLD 243 (307)
T ss_pred EEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHH--------------HHHHHHHHHHcCCCCCcccEEEe
Confidence 999999999999999999999999999999999987 322200 000001111 2222222234455
Q ss_pred hhcCCeEEEcCHHHHHHHHHHHHHhcCceEec-chHHHHHHHHHHHHh--cCCCCEEEEEecCC
Q 038224 190 MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGS-SSAMNCVGAVRVAQS--LGPGHTIVTILCDS 250 (282)
Q Consensus 190 ~~~~d~~~~V~d~e~~~a~~~la~~eGi~~ep-ssaaalaal~~l~~~--~~~~~~Vv~v~tGg 250 (282)
.++.|+.+.|+|+|++++++.|++++||++|| ++|++++++.++.++ ++++++||+|+|||
T Consensus 244 ~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 244 DDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 67789999999999999999999999999999 699999999999876 66788999999996
No 71
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.97 E-value=5e-29 Score=235.75 Aligned_cols=220 Identities=16% Similarity=0.171 Sum_probs=153.0
Q ss_pred HhHHHHHhcCCeEEEeCCChhH------------------HHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSD------------------GAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWE 103 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~------------------a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~e 103 (282)
.|+.+|+.|||+|+.+++++++ ++++|.+.+...++.+|..++. +.++..||.++|+||++
T Consensus 167 ~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~-~~~~~~~~~~ig~Ei~~ 245 (427)
T PRK12391 167 YRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSV-LNHVLLHQTVIGLEAKK 245 (427)
T ss_pred HHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCC-CcHHHhhHHHHHHHHHH
Confidence 5778999999999999988765 4555566554433444444332 22455578999999999
Q ss_pred HhC---CCCCEEEEecChhHHHHHHHHHHHh---cC-CCcEEEEEcCCCCc-hhhhhhc---cccch--h---hhhcCcc
Q 038224 104 QTG---GELDAFVAAAGTGGTVAGVSRFLQE---NN-PNIKCFLIDPPGSS-LFNKVTR---GVMYT--K---EEAEGRR 167 (282)
Q Consensus 104 Ql~---~~pd~ivvpvG~GG~~aGi~~g~k~---~~-~~~~iigVe~~~~~-~~~~~~~---g~~~~--~---~~~~g~~ 167 (282)
|+. ..||+||+|+|+||+++|++.+|.. .+ +.+|||+|||.+|+ +...+.. |+... + ...-|..
T Consensus 246 Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~ 325 (427)
T PRK12391 246 QLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHD 325 (427)
T ss_pred HHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCC
Confidence 997 3699999999999999999997743 34 88999999999998 4443221 10000 0 0000000
Q ss_pred ccCCCCccccccCCCCCc---HhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh---cCCCC
Q 038224 168 LKNPFDTITEGIGINRLT---QNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS---LGPGH 241 (282)
Q Consensus 168 v~~~~~t~a~gi~~~~~~---~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~---~~~~~ 241 (282)
+ .+..+.+.|+...-.. ..+....+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++ .+.++
T Consensus 326 ~-~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~ 404 (427)
T PRK12391 326 F-VPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEK 404 (427)
T ss_pred C-CCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCC
Confidence 0 0122334444321111 112233345889999999999999999999999999999999999998764 23478
Q ss_pred EEEEEecCCCcchhhhhcChhHHh
Q 038224 242 TIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 242 ~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
+||+++||+|++++..| ++|+.
T Consensus 405 ~iv~~lsG~G~~d~~~y--~~~l~ 426 (427)
T PRK12391 405 VILFNLSGHGLLDLAAY--DAYLA 426 (427)
T ss_pred EEEEEeCCCCCCCHHHH--HHHhc
Confidence 99999999999988866 56764
No 72
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.97 E-value=5.3e-30 Score=236.36 Aligned_cols=196 Identities=16% Similarity=0.185 Sum_probs=153.2
Q ss_pred HhHHHHHhcCCeEEEeCCC---hhHHHHHhccCcccC-CCcEecCCCCChHHHHhhhhcHHHHHHHHhCC---CCCEEEE
Q 038224 42 KRRRAVDKDGKELEHINGY---GSDGAIQSSKFPSDC-TGGFFADQFENLANFRAHYEGTGPEIWEQTGG---ELDAFVA 114 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~---~~~a~~~a~~~~~~~-~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~---~pd~ivv 114 (282)
.|+.+|+.|||+|+.++++ .+.+.+.+.++..+. ..+++++|+.||.+..| +.++++||++|+++ .||+||+
T Consensus 111 ~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g-~~~~~~Ei~~q~~~~~~~~d~vv~ 189 (331)
T PRK03910 111 GNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALG-YVACALEIAQQLAEGGVDFDAVVV 189 (331)
T ss_pred CcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHH-HHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4567899999999999976 222344455554432 24667788999999998 48999999999974 6999999
Q ss_pred ecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCC--CcH--hhHh
Q 038224 115 AAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINR--LTQ--NFMM 190 (282)
Q Consensus 115 pvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~--~~~--~~~~ 190 (282)
|+|+|||++|++++|++++|+++||+|||.+++.+..-. +....++.+++++.+. .+. .+..
T Consensus 190 ~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~--------------~~~~~~~~a~~~g~~~~~~~~~~~~~~ 255 (331)
T PRK03910 190 ASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPK--------------VAKLAQATAELLGLPTEIPRADIRLWD 255 (331)
T ss_pred eCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHH--------------HHHHHHHHHHHcCCCccCCcccEEEEc
Confidence 999999999999999999999999999999886332100 0001234556665441 122 3446
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEecc-hHHHHHHHHHHHHh--cCCCCEEEEEecCCCc
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGSS-SAMNCVGAVRVAQS--LGPGHTIVTILCDSGM 252 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps-saaalaal~~l~~~--~~~~~~Vv~v~tGgg~ 252 (282)
++.|+.+.|+|+|+++++++|++++||++||+ ||+++++++++.++ ++++++||+|+|||+.
T Consensus 256 ~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG~~ 320 (331)
T PRK03910 256 DYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGGAP 320 (331)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCChH
Confidence 77889999999999999999999999999996 99999999998764 4567899999999865
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.96 E-value=3.8e-29 Score=246.79 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=162.7
Q ss_pred HHhHHHHHhcCCeEEEeCC---ChhHHHHHh-ccCccc-CCCcEecCCCCCh----HHHHhhhhcHHHHHHHHhCC----
Q 038224 41 SKRRRAVDKDGKELEHING---YGSDGAIQS-SKFPSD-CTGGFFADQFENL----ANFRAHYEGTGPEIWEQTGG---- 107 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g---~~~~a~~~a-~~~~~~-~~~~~~~~~~~np----~~~~gh~~t~a~EI~eQl~~---- 107 (282)
..|+.+|+.|||+|+.+++ ++++|...+ ++++++ ...+|+++++.|| .++..|++++|+||++|+..
T Consensus 419 ~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~ 498 (695)
T PRK13802 419 ALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGI 498 (695)
T ss_pred HHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3578899999999999983 568886555 445543 2345677777543 45666799999999999953
Q ss_pred -CCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhh----hhhc--cc--------cchhhhhcCccccCC
Q 038224 108 -ELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFN----KVTR--GV--------MYTKEEAEGRRLKNP 171 (282)
Q Consensus 108 -~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~----~~~~--g~--------~~~~~~~~g~~v~~~ 171 (282)
.||+||+|||+||+++|++.+|++ .|.+|||||||.++. ... .+.. |. .+...+..|+.. +
T Consensus 499 ~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~--~ 575 (695)
T PRK13802 499 DHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTL--D 575 (695)
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCcc--C
Confidence 599999999999999999999976 688999999999874 211 0111 11 111122222221 3
Q ss_pred CCccccccCCCCC-cHhhHhhcCCeE--EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCC----CCEEE
Q 038224 172 FDTITEGIGINRL-TQNFMMAKLDGA--FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGP----GHTIV 244 (282)
Q Consensus 172 ~~t~a~gi~~~~~-~~~~~~~~~d~~--~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~----~~~Vv 244 (282)
..+++.||..+-+ |..-.....+.+ +.|+|+|++++.+.|++.|||+++|+|++++|+++++++++++ +++||
T Consensus 576 ~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv 655 (695)
T PRK13802 576 TYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMI 655 (695)
T ss_pred ccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 3566777764333 332223445554 8999999999999999999999999999999999999987653 56999
Q ss_pred EEecCCCcchhhhhcC-hhHHhh
Q 038224 245 TILCDSGMRHLSKFYD-VHYLSQ 266 (282)
Q Consensus 245 ~v~tGgg~ky~~~~~~-~~w~~~ 266 (282)
+++||+|.||++++.. .+||++
T Consensus 656 ~~lsg~GdKdl~~~~~~~~~~~~ 678 (695)
T PRK13802 656 VNISGRGDKDMNTAGKWFGYLTD 678 (695)
T ss_pred EEECCCCcCCHHHHHHHhCCCCh
Confidence 9999999999999743 145543
No 74
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.96 E-value=5.8e-30 Score=236.63 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=152.0
Q ss_pred hHHHHHhcCCeEEEeCCChh----HHHHHhccCcccCCCcEe-cCCC--CChHHHHhhhhcHHHHHHHH---hCCCCCEE
Q 038224 43 RRRAVDKDGKELEHINGYGS----DGAIQSSKFPSDCTGGFF-ADQF--ENLANFRAHYEGTGPEIWEQ---TGGELDAF 112 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g~~~----~a~~~a~~~~~~~~~~~~-~~~~--~np~~~~gh~~t~a~EI~eQ---l~~~pd~i 112 (282)
|+.+|+.|||+|+.++++++ ++.+.+.+..++..+..| ++.+ .+|....| |.++++||++| ++++||+|
T Consensus 115 ~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~a~Ei~~q~~~~~~~~d~v 193 (337)
T PRK12390 115 NILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLG-FVGFAEEVRAQEAELGFKFDYI 193 (337)
T ss_pred cHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHH-HHHHHHHHHHHHHhcCCCCCEE
Confidence 67789999999999999875 666666555444223333 3333 34666676 79999999998 44579999
Q ss_pred EEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCC--cH--h
Q 038224 113 VAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL--TQ--N 187 (282)
Q Consensus 113 vvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~--~~--~ 187 (282)
|+|+|+|||++|++++||++.|++|||+|||.+++ ++.+ + +....++++++++.+.+ +. .
T Consensus 194 vv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~-~--------------~~~~~~~~a~~~g~~~~~~~~~~~ 258 (337)
T PRK12390 194 VVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRA-Q--------------VLRIARNTAELVELGRDITEDDVV 258 (337)
T ss_pred EEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHH-H--------------HHHHHHHHHHHhCCCCCCChhhEE
Confidence 99999999999999999999999999999999886 3322 0 00123455666666542 22 2
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecc-hHHHHHHHHHHHHh--cCCCCEEEEEecCCCc
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSS-SAMNCVGAVRVAQS--LGPGHTIVTILCDSGM 252 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps-saaalaal~~l~~~--~~~~~~Vv~v~tGgg~ 252 (282)
+...++|+.+.|+|++++++++.|++++||++||+ ||+++++++++.++ ++++++||++||||-.
T Consensus 259 ~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~htgg~~ 326 (337)
T PRK12390 259 LDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHLGGVP 326 (337)
T ss_pred EecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCChH
Confidence 34567899999999999999999999999999997 99999999999875 7788999999999943
No 75
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=8.5e-29 Score=231.31 Aligned_cols=203 Identities=19% Similarity=0.217 Sum_probs=173.5
Q ss_pred HHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChh
Q 038224 41 SKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTG 119 (282)
Q Consensus 41 ~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~G 119 (282)
.-|++||..|||+++.++|+||||.+.+.+++.. .++++..+.-||..++| ++|+++||++|+++ .||+|++|+|+|
T Consensus 163 ~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~-~~~~~~~nsiNp~rleg-q~t~~fe~~~ql~~~~p~~v~vPvGn~ 240 (411)
T COG0498 163 PGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANR-EGLLSAVNSINPYRLEG-QKTYAFEIAEQLGWKAPDHVVVPVGNG 240 (411)
T ss_pred HHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhh-CCceeeccccCHHHhhh-hhhhHhHHHHHhCCCCCCeEEEeCCch
Confidence 3578999999999999999999999999998764 56688888999999998 79999999999995 699999999999
Q ss_pred HHHHHHHHHHHhcCC------CcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc-H----h
Q 038224 120 GTVAGVSRFLQENNP------NIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT-Q----N 187 (282)
Q Consensus 120 G~~aGi~~g~k~~~~------~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~-~----~ 187 (282)
|++.|++++|++..| -|++.+||++++. ....++.+ . ....|++++|.++.+. + .
T Consensus 241 gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~----------~---~~~~T~a~am~I~~p~n~~r~l~ 307 (411)
T COG0498 241 GNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEG----------R---ETPETIAPAMDIGNPSNWERALF 307 (411)
T ss_pred HHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccc----------c---ccccccccccccCCCCCHHHHHH
Confidence 999999999999765 3688999999874 66665432 1 2457889999887653 1 1
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh-cCCCCEEEEEecCCCcchhhhh
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS-LGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~-~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
......+....|+|+|++++++++++++|+++||+||+++++++++.++ +++++++|+++||++.|+.+++
T Consensus 308 a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~v 379 (411)
T COG0498 308 ALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDTV 379 (411)
T ss_pred HHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhHH
Confidence 1133446689999999999999999999999999999999999999865 6678999999999999999985
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.96 E-value=2.4e-29 Score=232.51 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=152.8
Q ss_pred HhHHHHHhcCCeEEEeCCChh----HHHHHhccCcccC-CC-cEecCC-CCChHHHHhhhhcHHHHHHHHhC---CCCCE
Q 038224 42 KRRRAVDKDGKELEHINGYGS----DGAIQSSKFPSDC-TG-GFFADQ-FENLANFRAHYEGTGPEIWEQTG---GELDA 111 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~----~a~~~a~~~~~~~-~~-~~~~~~-~~np~~~~gh~~t~a~EI~eQl~---~~pd~ 111 (282)
.|+++|+.|||+|+.++++++ ++...+.+...+. +. |+++.+ ..+|....| +.++++||++|++ ..||+
T Consensus 113 ~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~G-~~~~~~Ei~eq~~~~~~~~D~ 191 (337)
T TIGR01274 113 GNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLGGLG-FVGFAFEVREQEGELGFKFDY 191 (337)
T ss_pred chHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccchhH-HHHHHHHHHHHHHhcCCCCCE
Confidence 478889999999999999876 5554444443332 22 344444 346888887 6999999999964 46999
Q ss_pred EEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCCCC--c--Hh
Q 038224 112 FVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRL--T--QN 187 (282)
Q Consensus 112 ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~--~--~~ 187 (282)
||+|+|+|||++|++++|+++.|++|||+|||.+++.+.... +....++++++++.... + ..
T Consensus 192 vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~~~~~ 257 (337)
T TIGR01274 192 VVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQ--------------ILRIARNTAEKIGLERDITEDDVV 257 (337)
T ss_pred EEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHH--------------HHHHHHHHHHHhCCCCCcCccceE
Confidence 999999999999999999999999999999999986332110 00123456677765432 1 24
Q ss_pred hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecc-hHHHHHHHHHHHHh--cCCCCEEEEEecCCCc
Q 038224 188 FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSS-SAMNCVGAVRVAQS--LGPGHTIVTILCDSGM 252 (282)
Q Consensus 188 ~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps-saaalaal~~l~~~--~~~~~~Vv~v~tGgg~ 252 (282)
+...+.++.|.|+|++++++++.|++++|+++||+ +|++++|++++.++ ++++++||+++|||-.
T Consensus 258 ~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~htGG~~ 325 (337)
T TIGR01274 258 LDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAHLGGAP 325 (337)
T ss_pred EeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEeCCChh
Confidence 45667889999999999999999999999999996 99999999999875 7788999999999743
No 77
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.96 E-value=3.1e-28 Score=239.95 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=161.2
Q ss_pred hHHHHHhcCCeEEEeC---CChhHHHHHhcc-CcccCCCcEecCCC-----CChHHHHhhhhcHHHHHHHHhCC----CC
Q 038224 43 RRRAVDKDGKELEHIN---GYGSDGAIQSSK-FPSDCTGGFFADQF-----ENLANFRAHYEGTGPEIWEQTGG----EL 109 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~---g~~~~a~~~a~~-~~~~~~~~~~~~~~-----~np~~~~gh~~t~a~EI~eQl~~----~p 109 (282)
++..|+.|||+|+.++ +++.++..++.+ +....++.+|+.++ ..|.++..|++++++||++|++. .|
T Consensus 360 nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~p 439 (610)
T PRK13803 360 NVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLP 439 (610)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCC
Confidence 5678999999999998 467777655544 32333445555332 22555655689999999999952 59
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCch-----hhhhhccccc--------hhhhhcCccccCCCCccc
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSL-----FNKVTRGVMY--------TKEEAEGRRLKNPFDTIT 176 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~-----~~~~~~g~~~--------~~~~~~g~~v~~~~~t~a 176 (282)
|+||+|+|+||+++|++.+|++ .|+++||||||.++.. ..++..|..- ...+..|+. ....+++
T Consensus 440 D~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~--~~~~sia 516 (610)
T PRK13803 440 DAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQI--LEPHSIS 516 (610)
T ss_pred CEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcc--cCCceee
Confidence 9999999999999999999964 7899999999998632 2333333110 000111111 1346788
Q ss_pred cccCCCCC-cHhhH--hhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcc
Q 038224 177 EGIGINRL-TQNFM--MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMR 253 (282)
Q Consensus 177 ~gi~~~~~-~~~~~--~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~k 253 (282)
.|+..+.+ +.... ....++++.|+|+|++++++.|++.+||+++++||+++|++++++++++++++||+++||+|+|
T Consensus 517 ~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~~~~~Vvv~lsG~G~k 596 (610)
T PRK13803 517 AGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGRGDK 596 (610)
T ss_pred ccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcCCCCeEEEEeCCCCcC
Confidence 88876543 22222 3344578999999999999999999999999999999999999887787789999999999999
Q ss_pred hhhhhcChhHHh
Q 038224 254 HLSKFYDVHYLS 265 (282)
Q Consensus 254 y~~~~~~~~w~~ 265 (282)
|++++ ..|+.
T Consensus 597 d~~~~--~~~~~ 606 (610)
T PRK13803 597 DIPTL--KEYFE 606 (610)
T ss_pred CHHHH--HHHHh
Confidence 99988 45664
No 78
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.95 E-value=2.7e-28 Score=221.72 Aligned_cols=194 Identities=25% Similarity=0.405 Sum_probs=152.1
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccC------CCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCE--EE
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDC------TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDA--FV 113 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~------~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~--iv 113 (282)
.|+++|+.+||+|+.++++++++.+.+.+++++. ..+. ++|++||..+.+ |.++++||++|++ .||. ||
T Consensus 93 ~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~~~~~~Ei~~q~~-~~d~d~vv 169 (306)
T PF00291_consen 93 EKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQYNNPNVIAG-YATIGLEIYEQLG-KPDPDYVV 169 (306)
T ss_dssp HHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTTTSHHHHHH-HHHHHHHHHHHHT-TESESEEE
T ss_pred ccccceeeecceEEEccccccccccccccccccccccccccccc-cCcccchhhhhh-hhhcchhcccccc-cccceEEE
Confidence 4678899999999999998777766666655421 1122 667767776665 8999999999998 7766 99
Q ss_pred EecChhHHHHHHHHHHHh--cCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCC--C---c
Q 038224 114 AAAGTGGTVAGVSRFLQE--NNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINR--L---T 185 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~--~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~--~---~ 185 (282)
+|+|+||+++|++.+|+. . |++++|+|+|.+++ +...++.|. +...+..+.+.||+.+. + .
T Consensus 170 v~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~----------~~~~~~~~~~~gl~~~~~~~~~~~ 238 (306)
T PF00291_consen 170 VPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGK----------PIRLPGESTIAGLGVPMPFPGELD 238 (306)
T ss_dssp EEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTS----------CEHSSCHHSSTGGTSSSCTTTTHH
T ss_pred ecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccc----------cccccceeeeecccCCccchhhhh
Confidence 999999999999999999 7 89999999999987 666766553 22112224455888765 2 2
Q ss_pred HhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhc----CCCCEEEEEecC
Q 038224 186 QNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL----GPGHTIVTILCD 249 (282)
Q Consensus 186 ~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~----~~~~~Vv~v~tG 249 (282)
+.+..++.+.++.|+|+|+.++++.|++++|+++||++|++++++++++++. +++++||+|+||
T Consensus 239 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 239 LELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 2345677788899999999999999999999999999999999999988763 578999999997
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.94 E-value=4.3e-26 Score=210.13 Aligned_cols=193 Identities=18% Similarity=0.099 Sum_probs=141.2
Q ss_pred hHHHHHhcCCeEEEeCC--Ch---hHHHHHhccCcccC-CCcEecCCCCChHHHHhhhhcHHHHHHHHhCC---CCCEEE
Q 038224 43 RRRAVDKDGKELEHING--YG---SDGAIQSSKFPSDC-TGGFFADQFENLANFRAHYEGTGPEIWEQTGG---ELDAFV 113 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g--~~---~~a~~~a~~~~~~~-~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~---~pd~iv 113 (282)
++.+|+.|||+|+.++. ++ +.+.+.+.++.++. ..|++++++.||.++.+|+..++ ||++|+++ .+|+||
T Consensus 111 ~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~~~~-EI~~q~~~~~~~~d~vv 189 (329)
T PRK14045 111 NYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVRAVG-EIATQVKKLGVRFDSIV 189 (329)
T ss_pred CHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHH-HHHHHHHhcCCCCCEEE
Confidence 44567899999998873 22 34556666654432 23556788999999999766665 99999973 699999
Q ss_pred EecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc--hhhhhhccccchhhhhcCccccCCCCccccccCCCC-CcHhhHh
Q 038224 114 AAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS--LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINR-LTQNFMM 190 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~--~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~-~~~~~~~ 190 (282)
+|+|||||++|++++||..+|+++||+|+|.+.. +...+.... .......|++.+. .+..++.
T Consensus 190 ~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~d~ 255 (329)
T PRK14045 190 VAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLV--------------KKTKELLGVKVKVQEPELYDY 255 (329)
T ss_pred EeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHH--------------HHHHHHhCCCCCccceEeccc
Confidence 9999999999999999999999999999997632 222221100 0011123343322 2222223
Q ss_pred hcCCeEEEcCHHHHHHHHHHHHHhcCceEec-chHHHHHHHHHHHHhcCCCCEEEEEecCCCc
Q 038224 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGS-SSAMNCVGAVRVAQSLGPGHTIVTILCDSGM 252 (282)
Q Consensus 191 ~~~d~~~~V~d~e~~~a~~~la~~eGi~~ep-ssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ 252 (282)
..|++..++ ++++++++.|++++||++|| +||++++++++++++.+.+++||+|+|||-.
T Consensus 256 -~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~~~~iv~ihtGG~~ 316 (329)
T PRK14045 256 -SFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGELGEKILFIHTGGIS 316 (329)
T ss_pred -ccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCCCCCEEEEECCCcc
Confidence 346755666 79999999999999999999 8999999999999875447899999999854
No 80
>PRK09225 threonine synthase; Validated
Probab=99.88 E-value=3.1e-21 Score=184.06 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=155.0
Q ss_pred HhHHHHHhc-CCeE--EEeCCChhHHHHHhccCccc-----CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC---CCC
Q 038224 42 KRRRAVDKD-GKEL--EHINGYGSDGAIQSSKFPSD-----CTGGFFADQFENLANFRAHYEGTGPEIWEQTGG---ELD 110 (282)
Q Consensus 42 ~~~~~~~~~-GA~v--~~~~g~~~~a~~~a~~~~~~-----~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~---~pd 110 (282)
-+++||..| |++| +.|+|+||||...+.++..+ ..+++-.|. -||..+++ +++.++|+++|+.+ .|+
T Consensus 170 ~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri~g-Q~~yyfea~~ql~~~~~~p~ 247 (462)
T PRK09225 170 VQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRLLA-QIVYYFYAYLQLGIEAGEKV 247 (462)
T ss_pred HHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHHHH-HHHHHHHHHHHhccccCCCC
Confidence 356899999 9976 99999999999888875433 123444444 69999998 79999999999985 389
Q ss_pred EEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCc--Hh
Q 038224 111 AFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT--QN 187 (282)
Q Consensus 111 ~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~--~~ 187 (282)
.|++|+|+||++.|.+.+-+--.|-+|+|+++ ..++ +.+.+.+|.... .....|++.+|.+..++ ..
T Consensus 248 ~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~---------~~~~~T~s~amdI~~psn~eR 317 (462)
T PRK09225 248 NFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDP---------RPTVATLSPAMDISVSSNFER 317 (462)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCcc---------CCCCCCcCchhhcCCCCcHHH
Confidence 99999999999999999843333667999997 4455 445566664211 11357888888775542 11
Q ss_pred ------------h---Hh---hcCC---------------eEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHH
Q 038224 188 ------------F---MM---AKLD---------------GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVA 234 (282)
Q Consensus 188 ------------~---~~---~~~d---------------~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~ 234 (282)
+ .. ...+ ..+.|+|+|+.++++.+++++|+++||.||++++++.++
T Consensus 318 ~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~- 396 (462)
T PRK09225 318 LLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREY- 396 (462)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHh-
Confidence 1 00 1122 568899999999999999999999999999999999776
Q ss_pred HhcCCCCEEEEEecCCCcchhhhhc
Q 038224 235 QSLGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 235 ~~~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
+.++.++|++.|+++.|+.+.+.
T Consensus 397 --~~~~~~~V~l~Ta~p~Kf~~~v~ 419 (462)
T PRK09225 397 --LDPGEPGVVLSTAHPAKFPEVVE 419 (462)
T ss_pred --hCCCCCEEEEecCCccCCHHHHH
Confidence 34667899999999999988764
No 81
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.86 E-value=2.5e-20 Score=177.93 Aligned_cols=205 Identities=15% Similarity=0.059 Sum_probs=155.8
Q ss_pred HhHHHHHhcCC---eEEEeCCChhHHHHHhccCcccC-----CCcEecCCCCChHHHHhhhhcHHHHHHHHhCC----CC
Q 038224 42 KRRRAVDKDGK---ELEHINGYGSDGAIQSSKFPSDC-----TGGFFADQFENLANFRAHYEGTGPEIWEQTGG----EL 109 (282)
Q Consensus 42 ~~~~~~~~~GA---~v~~~~g~~~~a~~~a~~~~~~~-----~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~----~p 109 (282)
-+++||..+|+ +++.|+|+||||...+.++..+. .+++-.| .-||..+++ +++..+|+++|+.+ .|
T Consensus 171 ~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~saN-SiN~~Ri~~-Q~~yyf~a~~ql~~~~~~~p 248 (460)
T cd01560 171 IQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSAN-SINWARILA-QIVYYFYAYLQLLKRGEGEK 248 (460)
T ss_pred HHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEEe-ccCHHHHHH-HHHHHHHHHHHhccccCCCC
Confidence 46789999997 99999999999998888765431 2334444 469999998 79999999999975 58
Q ss_pred CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhh-hhhccccchhhhhcCccccCCCCccccccCCCCCc--H
Q 038224 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFN-KVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLT--Q 186 (282)
Q Consensus 110 d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~-~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~--~ 186 (282)
+.|++|+|+||++.|.+.+.+--.|-+++|+++... +++. .+.+|.... ......|++.+|.+..++ .
T Consensus 249 ~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n-~il~~~~~~G~y~~--------~~~~~~T~spamdI~~psn~e 319 (460)
T cd01560 249 VEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN-DVLRRFFKTGRYDR--------RESLKQTLSPAMDILKSSNFE 319 (460)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC-hHHHHHHHcCCCcC--------CCCCCCCcCchhhcCCCCCHH
Confidence 999999999999999999966444667899865432 3554 456664321 012357888888776542 1
Q ss_pred hhHhh---cCC------------------------------eEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHH
Q 038224 187 NFMMA---KLD------------------------------GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRV 233 (282)
Q Consensus 187 ~~~~~---~~d------------------------------~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l 233 (282)
.+... .-+ ..+.|+|+|+.++++.+++++|+++||.||++++++.++
T Consensus 320 R~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~ 399 (460)
T cd01560 320 RLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERV 399 (460)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHH
Confidence 11111 111 468899999999999999999999999999999999887
Q ss_pred HHhcCCCCEEEEEecCCCcchhhhhc
Q 038224 234 AQSLGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 234 ~~~~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
.++ ++.++|++.|+++.|+.+.+.
T Consensus 400 ~~~--~~~~~V~l~Ta~p~Kf~~~v~ 423 (460)
T cd01560 400 RKS--PGTPGVVLSTAHPAKFPEAVK 423 (460)
T ss_pred Hhc--cCCCEEEEecCCcccCHHHHH
Confidence 654 456899999999999988763
No 82
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.83 E-value=3.5e-20 Score=164.03 Aligned_cols=164 Identities=19% Similarity=0.224 Sum_probs=133.1
Q ss_pred cCCCcEecCCCCChHHHHhhhhcHHHHHHHHhC--CCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhh
Q 038224 74 DCTGGFFADQFENLANFRAHYEGTGPEIWEQTG--GELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNK 151 (282)
Q Consensus 74 ~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~--~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~ 151 (282)
..+.|.+|.+.+||..-.| |...+.||.+|.. .++|+||+++|||||.||+..++....|+.+|||+.....+-...
T Consensus 145 g~kpyvIp~GG~~~~g~lG-yv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~ 223 (323)
T COG2515 145 GGKPYVIPEGGSSPLGALG-YVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLK 223 (323)
T ss_pred CCCCcEeccCCcCcccccc-HHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHH
Confidence 4467999999999988887 8999999999988 479999999999999999999999999999999999988763221
Q ss_pred hhccccchhhhhcCccccCCCCccccccCCC-CCcHhhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecc-hHHHHHH
Q 038224 152 VTRGVMYTKEEAEGRRLKNPFDTITEGIGIN-RLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSS-SAMNCVG 229 (282)
Q Consensus 152 ~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~-~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps-saaalaa 229 (282)
+.+..-..+.++-++.. ........++....|.++++|.+++++++++.|||..+|. +++++.+
T Consensus 224 --------------~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~G 289 (323)
T COG2515 224 --------------EQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYG 289 (323)
T ss_pred --------------HHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHH
Confidence 01111123334444443 2233445667778899999999999999999999999998 9999999
Q ss_pred HHHHHHh--cCCCCEEEEEecCCCc
Q 038224 230 AVRVAQS--LGPGHTIVTILCDSGM 252 (282)
Q Consensus 230 l~~l~~~--~~~~~~Vv~v~tGgg~ 252 (282)
+++++++ ++.+++|++|||||-.
T Consensus 290 lid~~~k~~f~~~~~vLfiHtGG~~ 314 (323)
T COG2515 290 LIDLARKGEFPDGSPVLFIHTGGAP 314 (323)
T ss_pred HHHHHhcccCCCCCceEEEEcCCcc
Confidence 9999865 7788899999999854
No 83
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.81 E-value=1.4e-18 Score=154.38 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=146.2
Q ss_pred HHhcCCeEEEeC---CChhHHHHHhcc-CcccCCCcEec-----CCCCChHHHHhhhhcHHHHHHHHhC----CCCCEEE
Q 038224 47 VDKDGKELEHIN---GYGSDGAIQSSK-FPSDCTGGFFA-----DQFENLANFRAHYEGTGPEIWEQTG----GELDAFV 113 (282)
Q Consensus 47 ~~~~GA~v~~~~---g~~~~a~~~a~~-~~~~~~~~~~~-----~~~~np~~~~gh~~t~a~EI~eQl~----~~pd~iv 113 (282)
|+.+||+|+.|. ++..||.-+|.+ ++..-+..+|+ .|..-|..+.-.++.|+.|.-+|+- .-||+||
T Consensus 149 M~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vv 228 (396)
T COG0133 149 MRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVV 228 (396)
T ss_pred hhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEE
Confidence 555566665552 244555544443 33332334443 2344455666667889999988863 3599999
Q ss_pred EecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhh-----hhhcc---c-----cchhhhhcCccccCCCCccccccC
Q 038224 114 AAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFN-----KVTRG---V-----MYTKEEAEGRRLKNPFDTITEGIG 180 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~-----~~~~g---~-----~~~~~~~~g~~v~~~~~t~a~gi~ 180 (282)
.|||+|++..|++.-|-. .+++++||||+.+..+-. ++..| . .|-..+.+|+.. ...++..|+.
T Consensus 229 ACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~--e~hSISAGLD 305 (396)
T COG0133 229 ACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQIL--ESHSISAGLD 305 (396)
T ss_pred EeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEe--eeeeeccCCC
Confidence 999999999999888754 367999999997743211 11111 1 111123344432 3455666665
Q ss_pred CCCC-cHhh-H-hhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhh
Q 038224 181 INRL-TQNF-M-MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 181 ~~~~-~~~~-~-~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
.+-+ |..- . ..-.-+.+.|+|+|+++|.+.|++.|||+.-..|+.|+|-+.+++++.++++.||+-+||.|.|+..+
T Consensus 306 YPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ivvnlSGRGDKDv~t 385 (396)
T COG0133 306 YPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFT 385 (396)
T ss_pred CCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcEEEEEccCCCcccHHH
Confidence 4333 3322 2 22234678999999999999999999999999999999999999988878889999999999999998
Q ss_pred hcChhHHhhC
Q 038224 258 FYDVHYLSQQ 267 (282)
Q Consensus 258 ~~~~~w~~~~ 267 (282)
+. .|+..+
T Consensus 386 v~--~~l~~~ 393 (396)
T COG0133 386 VA--KLLGGR 393 (396)
T ss_pred HH--HHhhcc
Confidence 83 465543
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=147.72 Aligned_cols=234 Identities=17% Similarity=0.207 Sum_probs=158.1
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecC
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD 82 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~ 82 (282)
||++|||+|+ | +|....+.-++..++.++ ++|+..-|+.+|.+.+-...+..|..
T Consensus 172 lM~~yGa~V~---p----SPS~~Te~Grk~l~e~p~------------------hPGSLGIAISEAiE~al~~~~~kY~l 226 (432)
T COG1350 172 LMELYGAEVV---P----SPSELTEFGRKILKEDPD------------------HPGSLGIAISEAIEYALKNENTKYSL 226 (432)
T ss_pred HHHHhCCeec---C----CCcchhHHHHHHHhcCCC------------------CCchhHHHHHHHHHHHHhCCCceecc
Confidence 6788888887 2 445667777787777766 78888888888888665544455554
Q ss_pred CCCChHHHHhhhhcHHHHHHHHh---CCCCCEEEEecChhHHHHHHHHHHHh--c-C-CCcEEEEEcCCCCchhhhhhcc
Q 038224 83 QFENLANFRAHYEGTGPEIWEQT---GGELDAFVAAAGTGGTVAGVSRFLQE--N-N-PNIKCFLIDPPGSSLFNKVTRG 155 (282)
Q Consensus 83 ~~~np~~~~gh~~t~a~EI~eQl---~~~pd~ivvpvG~GG~~aGi~~g~k~--~-~-~~~~iigVe~~~~~~~~~~~~g 155 (282)
+.. -..+.-|+..+|.|.-+|+ +..||++|.|||+|++++|+..-|-. + + ...+.|+|+|..||.+..-...
T Consensus 227 GSV-lnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~ 305 (432)
T COG1350 227 GSV-LNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYR 305 (432)
T ss_pred hhH-HHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceee
Confidence 422 2234458888899996655 55799999999999999999766532 1 1 2279999999999954321110
Q ss_pred ccchh---------hhhcCccccCCCCccccccCCC-CCc-Hh-hHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecch
Q 038224 156 VMYTK---------EEAEGRRLKNPFDTITEGIGIN-RLT-QN-FMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSS 223 (282)
Q Consensus 156 ~~~~~---------~~~~g~~v~~~~~t~a~gi~~~-~~~-~~-~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epss 223 (282)
-.+.. +-.-|... .++.-.+.|+..- ..| .. +...-+-+....+.+|+++|.+.|++.|||+.-|.|
T Consensus 306 YD~gDtagltPllKMyTlGhd~-vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEs 384 (432)
T COG1350 306 YDFGDTAGLTPLLKMYTLGHDY-VPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPES 384 (432)
T ss_pred ccCCchhccchhhhhhccCCCc-cCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcc
Confidence 00000 00001111 1222334444321 111 11 223344567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CCCCEEEEEecCCCcchhhhhcChhHHh
Q 038224 224 AMNCVGAVRVAQSL---GPGHTIVTILCDSGMRHLSKFYDVHYLS 265 (282)
Q Consensus 224 aaalaal~~l~~~~---~~~~~Vv~v~tGgg~ky~~~~~~~~w~~ 265 (282)
+.|+.++++.+.+. ++.+.|++-++|+|+-+++.| +++|.
T Consensus 385 aHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y--~~yl~ 427 (432)
T COG1350 385 AHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAY--DKYLE 427 (432)
T ss_pred hhhHHHHHHHHHhccccCceeEEEEeccCccccchhhH--HHHhh
Confidence 99999999987653 344689999999999999877 45554
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.2e-16 Score=139.63 Aligned_cols=212 Identities=18% Similarity=0.235 Sum_probs=169.3
Q ss_pred hHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC--------CCCEEEE
Q 038224 43 RRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG--------ELDAFVA 114 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~--------~pd~ivv 114 (282)
|.+.+|.+|-+|+..+.+|..|+++-++.++..+..||++.-+...-..| |...+..+-.|+.. .|-.|..
T Consensus 198 KKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLG-YaVAa~Rlk~Q~d~~gi~vd~ehPLfVyl 276 (443)
T COG3048 198 KKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLG-YAVAAQRLKKQFDEQGIVVDAEHPLFVYL 276 (443)
T ss_pred HHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhh-HHHHHHHHHHHHHhcCceecCCCceEEEe
Confidence 45678899999999999999999999998887777888887444434445 99999999999852 4779999
Q ss_pred ecChhHHHHHHHHHHHhc-CCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHh---hH
Q 038224 115 AAGTGGTVAGVSRFLQEN-NPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQN---FM 189 (282)
Q Consensus 115 pvG~GG~~aGi~~g~k~~-~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~---~~ 189 (282)
|+|.||...|++.|+|.. ..+++++-+||..+| ++-.+.+|.+.. ..-+.+.....|.++|+++++++.. ..
T Consensus 277 PCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~---ISVqdiGidn~TaADGLAVgRpSgfVgr~m 353 (443)
T COG3048 277 PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQ---ISVQDIGIDNLTAADGLAVGRPSGFVGRAM 353 (443)
T ss_pred ecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccc---eeeEeecccccccccceeecCccchHHHHH
Confidence 999999999999999975 467999999999999 666777775532 1223344456788999999887653 34
Q ss_pred hhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHh---------cC----CCCEEEEEecCCCcchhh
Q 038224 190 MAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS---------LG----PGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 190 ~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~---------~~----~~~~Vv~v~tGgg~ky~~ 256 (282)
.+..++.|+|+|+..++....|++.||+.+|||+-+++.+..++.+. +. .+-+-|++.|||+....+
T Consensus 354 e~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPee 433 (443)
T COG3048 354 ERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEE 433 (443)
T ss_pred HHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHH
Confidence 67889999999999999999999999999999998888887766421 11 356789999999876555
Q ss_pred hh
Q 038224 257 KF 258 (282)
Q Consensus 257 ~~ 258 (282)
.+
T Consensus 434 eM 435 (443)
T COG3048 434 EM 435 (443)
T ss_pred HH
Confidence 43
No 86
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.66 E-value=2.5e-15 Score=135.13 Aligned_cols=210 Identities=16% Similarity=0.221 Sum_probs=136.2
Q ss_pred HHHhcCCeEEEeCC---ChhHHHHHhcc-CcccCCCcEec-----CCCCChHHHHhhhhcHHHHHHHHhC----CCCCEE
Q 038224 46 AVDKDGKELEHING---YGSDGAIQSSK-FPSDCTGGFFA-----DQFENLANFRAHYEGTGPEIWEQTG----GELDAF 112 (282)
Q Consensus 46 ~~~~~GA~v~~~~g---~~~~a~~~a~~-~~~~~~~~~~~-----~~~~np~~~~gh~~t~a~EI~eQl~----~~pd~i 112 (282)
.||.+||+|+-+.- +..|+-..+.+ +....+..+|+ .++.-|..+.-..++|+.|-..|+- ..||+|
T Consensus 216 rmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~v 295 (477)
T KOG1395|consen 216 RMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAV 295 (477)
T ss_pred HHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeE
Confidence 36777777775532 23333333332 11111122222 2233333333334888888877753 359999
Q ss_pred EEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCC----chh-hhhhccc--------cchhhhhcCccccCCCCcccccc
Q 038224 113 VAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGS----SLF-NKVTRGV--------MYTKEEAEGRRLKNPFDTITEGI 179 (282)
Q Consensus 113 vvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~----~~~-~~~~~g~--------~~~~~~~~g~~v~~~~~t~a~gi 179 (282)
|.|+|+|++.+|++.-|... ..+++|+|+..+- +.. ..+..|+ .|-..+..|+.+ .++++..|+
T Consensus 296 vaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~--~phsIsAGL 372 (477)
T KOG1395|consen 296 VACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIF--DPHSISAGL 372 (477)
T ss_pred EEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccc--cCCccccCC
Confidence 99999999999999888653 3467888887553 311 1122211 111123334432 345566666
Q ss_pred CCCCC-cH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhh
Q 038224 180 GINRL-TQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256 (282)
Q Consensus 180 ~~~~~-~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~ 256 (282)
..+-+ |. .+...-.-+++.|+|.|++++.+.|++.|||+.-|.+..|+++...+++++++++.||+-+||+|.|+..
T Consensus 373 dYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 373 DYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTLPEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred CCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhccccCCCcEEEEEecCCCCchHH
Confidence 54322 22 1222334588999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 038224 257 KF 258 (282)
Q Consensus 257 ~~ 258 (282)
.+
T Consensus 453 S~ 454 (477)
T KOG1395|consen 453 SV 454 (477)
T ss_pred HH
Confidence 65
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=87.78 E-value=1.2 Score=38.77 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=53.0
Q ss_pred EEcCHHHHHHHHHHHHHhcCceEecchHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhh
Q 038224 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKF 258 (282)
Q Consensus 197 ~~V~d~e~~~a~~~la~~eGi~~epssaaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~ 258 (282)
..|+++|+.+++...+...+.+++|-+|+++-...+...+-.++-.++|+.|-+..|+.+.+
T Consensus 149 e~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ps~~~i~lstAh~aKFa~AV 210 (266)
T KOG2616|consen 149 ERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQPSIPYICLSTAHPAKFAEAV 210 (266)
T ss_pred hhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccCCCCceEEecccChhhhhHHH
Confidence 57899999999999999999999999999998887776654456678999999988887664
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=81.49 E-value=6.8 Score=32.56 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=39.7
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhC-CCCCEEEEecChhH
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTG-GELDAFVAAAGTGG 120 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~-~~pd~ivvpvG~GG 120 (282)
.|-+|.+++|+.+.+.+.+..+.+.-++.-+ .++.++..-.. --.+|.++++ ..||.|++..|+--
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~i-vg~~~g~f~~~----~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRI-VGYHHGYFDEE----EEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEE-EEecCCCCChh----hHHHHHHHHHHcCCCEEEEECCCCH
Confidence 5789999999988777777666544333333 33333321111 1234444443 25999999999864
No 89
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=70.35 E-value=11 Score=32.44 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=44.0
Q ss_pred HhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 48 DKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 48 ~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
...||+|++++-+.++......++.++.+.-++.-...++.. ...+..++.+++++++|.+|..+|..
T Consensus 17 ~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~----v~~~~~~~~~~~~g~iD~lV~~a~~~ 84 (241)
T PF13561_consen 17 AEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEES----VEALFDEAVERFGGRIDILVNNAGIS 84 (241)
T ss_dssp HHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHH----HHHHHHHHHHHHCSSESEEEEEEESC
T ss_pred HHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHH----HHHHHHHHHhhcCCCeEEEEeccccc
Confidence 346999999999998754444444333222234333444433 35567888899844899999887654
No 90
>PLN02356 phosphateglycerate kinase
Probab=67.06 E-value=12 Score=35.93 Aligned_cols=37 Identities=92% Similarity=1.285 Sum_probs=25.6
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALEANE 38 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (282)
++|++|||+|+.+++.+.++.+++.+.++++.++..+
T Consensus 144 ~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e 180 (423)
T PLN02356 144 QILEALGATVERVRPVSITHKDHYVNIARRRALEANE 180 (423)
T ss_pred HHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHH
Confidence 6899999999999765444456666666665444443
No 91
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=65.52 E-value=18 Score=29.98 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=48.5
Q ss_pred hcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhHHHHHHHH
Q 038224 49 KDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGGTVAGVSR 127 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG~~aGi~~ 127 (282)
..|-+|.+++++.+.....+..+.+.-++.-++..++.+..... -.+|.++.+. .||.|+++.|+---= -...
T Consensus 44 ~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~-----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~ 117 (171)
T cd06533 44 QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEE-----EEEIIERINASGADILFVGLGAPKQE-LWIA 117 (171)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhh-----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHH
Confidence 35889999999888877776666444344333322222222221 2235555543 599999999985432 2233
Q ss_pred HHHhcCCCcEEEEE
Q 038224 128 FLQENNPNIKCFLI 141 (282)
Q Consensus 128 g~k~~~~~~~iigV 141 (282)
-.++..+..-+++|
T Consensus 118 ~~~~~l~~~v~~~v 131 (171)
T cd06533 118 RHKDRLPVPVAIGV 131 (171)
T ss_pred HHHHHCCCCEEEEe
Confidence 33444444445554
No 92
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=63.78 E-value=21 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=25.6
Q ss_pred eEecchHHHHHHHHHHHH-hcCCCCEEEEEecCCCc
Q 038224 218 FLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGM 252 (282)
Q Consensus 218 ~~epssaaalaal~~l~~-~~~~~~~Vv~v~tGgg~ 252 (282)
+.++.+|-++.-.++..+ +.+..++||+++|||++
T Consensus 88 ~ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 88 WSGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred ccCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCc
Confidence 466777766666666655 55567899999999985
No 93
>PRK07476 eutB threonine dehydratase; Provisional
Probab=53.36 E-value=20 Score=32.89 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=20.6
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.|||+|+.+++ .+++..+.+++++++
T Consensus 107 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~~~~ 136 (322)
T PRK07476 107 DAIRALGAEVRIVGR----SQDDAQAEVERLVRE 136 (322)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999999865 345555555555444
No 94
>PRK10717 cysteine synthase A; Provisional
Probab=53.10 E-value=19 Score=33.02 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=22.8
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++..++++++.+.+.+++++++
T Consensus 104 ~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~ 137 (330)
T PRK10717 104 DLLRALGAELVLVPAAPYANPNNYVKGAGRLAEE 137 (330)
T ss_pred HHHHHcCCEEEEeCCcccccccchHHHHHHHHHH
Confidence 5789999999999753333444455566655555
No 95
>PRK08197 threonine synthase; Validated
Probab=52.90 E-value=34 Score=32.33 Aligned_cols=71 Identities=13% Similarity=-0.058 Sum_probs=37.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEec
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFA 81 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~ 81 (282)
++|+++||+|+.+++ .+++..+.+++.+++.... ......+...++|...=+.+...++....+.++++
T Consensus 167 ~~~~~~GA~Vi~v~~----~~~~~~~~a~~~~~~~g~~-------~~~~~~np~~ieG~~t~a~Ei~eQl~~~~pD~vvv 235 (394)
T PRK08197 167 LECALAGAELYLVDG----LISDAGKIVAEAVAEYGWF-------DVSTLKEPYRIEGKKTMGLELAEQLGWRLPDVILY 235 (394)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHhcCcc-------cccCCCCccchhcHHHHHHHHHHHcCCCCCCEEEE
Confidence 578999999999975 3455555555544431100 00000233445555444566666553222455555
Q ss_pred CC
Q 038224 82 DQ 83 (282)
Q Consensus 82 ~~ 83 (282)
.-
T Consensus 236 pv 237 (394)
T PRK08197 236 PT 237 (394)
T ss_pred eC
Confidence 43
No 96
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=52.29 E-value=20 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=22.5
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++. .+++..+.+++++++
T Consensus 192 ~~ir~~GAeVv~~~~----~~~~a~~~A~~la~~ 221 (431)
T TIGR02035 192 DKLRSKGVTVVEYES----DYGVAVEEGRKNADA 221 (431)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999999976 456666666666554
No 97
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=51.87 E-value=21 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.+++ ..+...+.+++++++
T Consensus 174 ~~ira~GAeVv~v~~----~~~~a~~~a~~la~~ 203 (404)
T cd06447 174 DKLRSKGVTVVEYET----DYSKAVEEGRKQAAA 203 (404)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHHHH
Confidence 578999999999965 446666666665554
No 98
>PRK07478 short chain dehydrogenase; Provisional
Probab=51.11 E-value=84 Score=26.96 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=37.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccC-CCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDC-TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~-~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+.-+-++..+...++.... +-.++.-...++.. ......++.++++ ++|++|..+|.
T Consensus 29 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~id~li~~ag~ 93 (254)
T PRK07478 29 EGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAY----AKALVALAVERFG-GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHH----HHHHHHHHHHhcC-CCCEEEECCCC
Confidence 59999999776555444433332111 11223333344432 3445667777776 79999999885
No 99
>PRK08638 threonine dehydratase; Validated
Probab=50.40 E-value=23 Score=32.73 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=20.3
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++. ..++....+++++++
T Consensus 115 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~a~~ 144 (333)
T PRK08638 115 AATCGYGAEVVLHGD----NFNDTIAKVEEIVEE 144 (333)
T ss_pred HHHHHcCCEEEEECc----CHHHHHHHHHHHHHh
Confidence 578999999998854 345555555555444
No 100
>PRK07048 serine/threonine dehydratase; Validated
Probab=50.25 E-value=24 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=19.8
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+++++ ..++..+.++++.++
T Consensus 112 ~~~~~~GAeV~~~~~----~~~~~~~~a~~l~~~ 141 (321)
T PRK07048 112 AATRGYGGEVVTYDR----YTEDREEIGRRLAEE 141 (321)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999999975 334444444444433
No 101
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=48.82 E-value=24 Score=32.32 Aligned_cols=25 Identities=12% Similarity=-0.128 Sum_probs=19.7
Q ss_pred cCCeEEEcCHHHHHHHHHHHHHhcC
Q 038224 192 KLDGAFRGTDREAVEMSRFLVKNDG 216 (282)
Q Consensus 192 ~~d~~~~V~d~e~~~a~~~la~~eG 216 (282)
..+-.+..|.-..+.|..+++++.+
T Consensus 257 ~eGilvG~SsGA~~~aa~~~a~~~~ 281 (300)
T COG0031 257 EEGLLVGISSGAALAAALKLAKELP 281 (300)
T ss_pred HhCeeecccHHHHHHHHHHHHHhcC
Confidence 3456788899999999999988765
No 102
>PRK08862 short chain dehydrogenase; Provisional
Probab=48.10 E-value=1.2e+02 Score=25.97 Aligned_cols=65 Identities=12% Similarity=-0.143 Sum_probs=37.1
Q ss_pred cCCeEEEeCCChhHHHHHhccCcc-cCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPS-DCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~-~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.+...+...++.. ..+-..|.-...++. . ......++.+++++.+|.+|..+|.
T Consensus 28 ~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~---~-~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 28 LGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQE---S-IRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHH---H-HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 499999997776544333322211 111223332233432 2 3455667888887579999999864
No 103
>PRK15452 putative protease; Provisional
Probab=48.07 E-value=1.7e+02 Score=28.33 Aligned_cols=86 Identities=14% Similarity=0.009 Sum_probs=46.7
Q ss_pred hHHHHHhcCCeEEEeCCC---------------hhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC
Q 038224 43 RRRAVDKDGKELEHINGY---------------GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG 107 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g~---------------~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~ 107 (282)
+++..-.+||+-|.+++. +.++++.|.+... +-|+-+|......- .....+.++++..
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~--kvyvt~n~i~~e~e-----l~~~~~~l~~l~~ 87 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGK--KFYVVVNIAPHNAK-----LKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCC--EEEEEecCcCCHHH-----HHHHHHHHHHHHh
Confidence 344455689999999774 2234444433321 22333343332211 1123344455432
Q ss_pred -CCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEE
Q 038224 108 -ELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLI 141 (282)
Q Consensus 108 -~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigV 141 (282)
.+|.|++.- .|+...+++..|+..|++=
T Consensus 88 ~gvDgvIV~d------~G~l~~~ke~~p~l~ih~s 116 (443)
T PRK15452 88 MKPDALIMSD------PGLIMMVREHFPEMPIHLS 116 (443)
T ss_pred CCCCEEEEcC------HHHHHHHHHhCCCCeEEEE
Confidence 589998762 4667778887787777653
No 104
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=47.98 E-value=54 Score=27.46 Aligned_cols=65 Identities=6% Similarity=-0.132 Sum_probs=38.6
Q ss_pred hcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChh
Q 038224 49 KDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTG 119 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~G 119 (282)
..|..|.+++++-+.+...+..+.+.-++.-+. .++.++.... -.+|.++.+. .||.++++.|+=
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g~f~~~~-----~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFGPLEPEE-----RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECCCCChHH-----HHHHHHHHHHcCCCEEEEEcCCc
Confidence 367899999998887777776665443333222 2222221111 1345555542 599999999874
No 105
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=47.83 E-value=23 Score=30.08 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=31.0
Q ss_pred cHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHh-cCCCcEEEE
Q 038224 96 GTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQE-NNPNIKCFL 140 (282)
Q Consensus 96 t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~-~~~~~~iig 140 (282)
.-++|.+.+++ .||+||+ |+|+.+-++...+-+ +.|.-||++
T Consensus 91 g~Ap~~L~~~~-~~daiFI--GGg~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 91 GDAPEALPDLP-SPDAIFI--GGGGNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred ccchHhhcCCC-CCCEEEE--CCCCCHHHHHHHHHHHcCcCCeEEE
Confidence 34788888887 8999996 455888888877765 456666654
No 106
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=47.72 E-value=27 Score=31.94 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=19.0
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRA 33 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 33 (282)
++|+.|||+|+.++. ..++..+.+++++
T Consensus 107 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~~ 134 (317)
T TIGR02991 107 DEIRRLGAEVRIVGR----SQDDAQEEVERLV 134 (317)
T ss_pred HHHHHcCCEEEEeCC----CHHHHHHHHHHHH
Confidence 578999999999975 3344444444443
No 107
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=47.15 E-value=28 Score=33.11 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=21.2
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+++||+|+.+++ .++...+.+++++++
T Consensus 153 ~~ir~~GAeVi~~~~----~~~~a~~~a~~~a~~ 182 (396)
T TIGR03528 153 ENIRAEGAECTITDL----NYDDAVRLAWKMAQE 182 (396)
T ss_pred HHHHhcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 568999999999965 445666666655544
No 108
>PRK06110 hypothetical protein; Provisional
Probab=46.38 E-value=30 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=20.0
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+.+ ..+...+.+++++++
T Consensus 110 ~~i~~~GA~V~~~~~----~~~~~~~~a~~~~~~ 139 (322)
T PRK06110 110 AAMRALGAELIEHGE----DFQAAREEAARLAAE 139 (322)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999998854 345555555554443
No 109
>PRK02991 D-serine dehydratase; Provisional
Probab=46.33 E-value=29 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=21.8
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+.|||+|+++.. .+++..+.+++++++
T Consensus 197 ~~ir~~GAeVi~~~~----~~~~a~~~A~~la~~ 226 (441)
T PRK02991 197 DKLRSHGVTVVEYEG----DYGVAVEEGRKAAES 226 (441)
T ss_pred HHHHhCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999998865 456666666665544
No 110
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=46.25 E-value=1.3e+02 Score=22.76 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=47.6
Q ss_pred HHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhHHHHHH
Q 038224 47 VDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGGTVAGV 125 (282)
Q Consensus 47 ~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG~~aGi 125 (282)
.+.+|++|+.++.+-+ ..+.+.++-.. . +++..+ +. ...+|.+-.++ .+|.+|-++|++.++.-
T Consensus 10 ak~~G~~vi~~~~~~~-k~~~~~~~Ga~---~-~~~~~~-~~--------~~~~i~~~~~~~~~d~vid~~g~~~~~~~- 74 (130)
T PF00107_consen 10 AKAMGAKVIATDRSEE-KLELAKELGAD---H-VIDYSD-DD--------FVEQIRELTGGRGVDVVIDCVGSGDTLQE- 74 (130)
T ss_dssp HHHTTSEEEEEESSHH-HHHHHHHTTES---E-EEETTT-SS--------HHHHHHHHTTTSSEEEEEESSSSHHHHHH-
T ss_pred HHHcCCEEEEEECCHH-HHHHHHhhccc---c-cccccc-cc--------cccccccccccccceEEEEecCcHHHHHH-
Confidence 4578999999997544 45666655321 2 223222 11 23344444453 69999999998776554
Q ss_pred HHHHHhcCCCcEEEEEcCC
Q 038224 126 SRFLQENNPNIKCFLIDPP 144 (282)
Q Consensus 126 ~~g~k~~~~~~~iigVe~~ 144 (282)
.++.+.|.-+++.+--.
T Consensus 75 --~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 75 --AIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp --HHHHEEEEEEEEEESST
T ss_pred --HHHHhccCCEEEEEEcc
Confidence 44445555566655443
No 111
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=46.16 E-value=1.5e+02 Score=25.36 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=35.8
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|++++.+-+...+...++...... .++.-...++..+ .....++.++++ .+|.+|..+|.
T Consensus 32 ~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~ 96 (254)
T PRK08085 32 YGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEV----EAAIEHIEKDIG-PIDVLINNAGI 96 (254)
T ss_pred cCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHH----HHHHHHHHHhcC-CCCEEEECCCc
Confidence 4999999987755544443333211111 1222233444332 334456666666 79999999875
No 112
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=46.11 E-value=2e+02 Score=25.06 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCceEecchHHHH-HHHHHHHHhcCCCCEEEEEecCCCcchhhhhc
Q 038224 203 EAVEMSRFLVKNDGLFLGSSSAMNC-VGAVRVAQSLGPGHTIVTILCDSGMRHLSKFY 259 (282)
Q Consensus 203 e~~~a~~~la~~eGi~~epssaaal-aal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~ 259 (282)
.+...+..+. +++++-|--=|-|+ .+..++.. .+..+++++|+|||...+-++..
T Consensus 99 raR~~l~~m~-~~~~~~eniDGeAl~~a~~rL~~-r~e~rkiLiViSDG~P~d~st~~ 154 (219)
T PF11775_consen 99 RARRNLGLMM-REGLLKENIDGEALRWAAERLLA-RPEQRKILIVISDGAPADDSTLS 154 (219)
T ss_pred hHHHhHHHHh-hccccccCCcHHHHHHHHHHHHc-CCccceEEEEEeCCCcCcccccc
Confidence 3333344444 46777775433444 34444443 35778999999999998777653
No 113
>PLN02970 serine racemase
Probab=46.01 E-value=29 Score=31.92 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=19.2
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRAL 34 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 34 (282)
++|+++||+|+.+++ ..+...+.++++++
T Consensus 115 ~~~~~~GA~Vi~~~~----~~~~~~~~a~~la~ 143 (328)
T PLN02970 115 DAVIRYGGIITWCEP----TVESREAVAARVQQ 143 (328)
T ss_pred HHHHhcCCEEEEeCC----CHHHHHHHHHHHHH
Confidence 468999999999875 33444444444443
No 114
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=45.83 E-value=31 Score=31.03 Aligned_cols=30 Identities=30% Similarity=0.133 Sum_probs=20.4
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+++ .+++..+.+++++++
T Consensus 105 ~~l~~~Ga~vi~~~~----~~~~~~~~a~~la~~ 134 (304)
T cd01562 105 DATRAYGAEVVLYGE----DFDEAEAKARELAEE 134 (304)
T ss_pred HHHHHcCCEEEEeCC----CHHHHHHHHHHHHHh
Confidence 578999999999976 345555555554444
No 115
>PRK06381 threonine synthase; Validated
Probab=45.62 E-value=30 Score=31.56 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=19.7
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRAL 34 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 34 (282)
++|+.+||+|+.++. .+++..+.++++++
T Consensus 103 ~~l~~~GA~V~~~~~----~~~~~~~~a~~~~~ 131 (319)
T PRK06381 103 KEMEKYGAEIIYVDG----KYEEAVERSRKFAK 131 (319)
T ss_pred HHHHHcCCEEEEcCC----CHHHHHHHHHHHHH
Confidence 578999999999975 33455555554443
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=44.16 E-value=33 Score=32.14 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=21.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++. .+++.++.+++++++
T Consensus 88 ~~~~~~GA~V~~~~~----~~~~a~~~a~~~~~~ 117 (380)
T TIGR01127 88 KATKSYGAEVILHGD----DYDEAYAFATSLAEE 117 (380)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999998854 445666666655544
No 117
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=43.95 E-value=64 Score=24.65 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 038224 98 GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGS 146 (282)
Q Consensus 98 a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~ 146 (282)
+.++.++++ ..+||+..-+|.+.--+ ..+.|.+.|+++.+...
T Consensus 8 a~~~A~~~~--ak~Ivv~T~sG~ta~~i----sk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 8 AVELAEDLN--AKAIVVFTESGRTARLI----SKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHT--ESEEEEE-SSSHHHHHH----HHT-TSSEEEEEESSHH
T ss_pred HHHHHHhcC--CCEEEEECCCchHHHHH----HhhCCCCeEEEEcCcHH
Confidence 567888876 68999999998875544 44679999999998643
No 118
>PRK08526 threonine dehydratase; Provisional
Probab=43.72 E-value=34 Score=32.61 Aligned_cols=30 Identities=30% Similarity=0.109 Sum_probs=22.0
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.++.|||+|+++.+ .+++.++.+++++++
T Consensus 108 ~~~r~~GA~Vv~~g~----~~~~a~~~a~~~a~~ 137 (403)
T PRK08526 108 SGTKALGAEVILKGD----NYDEAYAFALEYAKE 137 (403)
T ss_pred HHHHhCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999865 456666666665554
No 119
>PRK06721 threonine synthase; Reviewed
Probab=43.63 E-value=34 Score=31.84 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=20.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+++ ..++..+.+++++++
T Consensus 116 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~~~~ 145 (352)
T PRK06721 116 AQAVAYGAEIISIEG----NFDDALKAVRNIAAE 145 (352)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999975 334545555554444
No 120
>PRK05867 short chain dehydrogenase; Provisional
Probab=43.35 E-value=1.5e+02 Score=25.43 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=36.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.+...+.+.++....... ++.-...++..+ .....++.+.++ ++|.+|...|.
T Consensus 32 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~g-~id~lv~~ag~ 96 (253)
T PRK05867 32 AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQV----TSMLDQVTAELG-GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCC
Confidence 59999999887665544433332111111 222233444333 334556666666 79999998875
No 121
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=43.01 E-value=38 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=19.7
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+++++. + ..++..+.++++.++
T Consensus 97 ~~~~~~GA~v~~~~~~-~-~~~~~~~~a~~~~~~ 128 (298)
T TIGR01139 97 KLLKAYGAELVLTPGA-E-GMKGAIAKAEEIAAS 128 (298)
T ss_pred HHHHHcCCEEEEECCC-C-CHHHHHHHHHHHHHh
Confidence 5789999999999752 1 123444444444433
No 122
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=42.90 E-value=35 Score=31.14 Aligned_cols=30 Identities=33% Similarity=0.234 Sum_probs=20.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++. ..++..+.+++++++
T Consensus 110 ~~l~~~GA~Vi~~~~----~~~~~~~~a~~~~~~ 139 (324)
T cd01563 110 AQALAYGATVLAVEG----NFDDALRLVRELAEE 139 (324)
T ss_pred HHHHHcCCEEEEECC----cHHHHHHHHHHHHHh
Confidence 578999999999865 335555555544443
No 123
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=42.86 E-value=35 Score=32.39 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=21.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+++||+|+.+++ .+++....+++++++
T Consensus 156 ~~i~~~GA~Vi~v~~----~~~~~~~~a~~~~~~ 185 (399)
T PRK08206 156 DAIRALGAECIITDG----NYDDSVRLAAQEAQE 185 (399)
T ss_pred HHHHHcCCEEEEeCC----CHHHHHHHHHHHHHH
Confidence 568999999999976 445555555554443
No 124
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=42.64 E-value=36 Score=32.10 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=21.0
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+.+||+|+++++ .++...+.+++++++
T Consensus 134 ~~i~~~GAeVi~v~~----~~~~a~~~a~~~~~~ 163 (376)
T TIGR01747 134 ENILNLGAECTITDM----NYDDTVRLAMQMAQQ 163 (376)
T ss_pred HHHHhCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999975 455655555555444
No 125
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=42.34 E-value=2e+02 Score=27.35 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=58.4
Q ss_pred HhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCC-eEEEeCCChhHH---HHHhccCcccCCCcEe
Q 038224 5 EALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGK-ELEHINGYGSDG---AIQSSKFPSDCTGGFF 80 (282)
Q Consensus 5 ~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA-~v~~~~g~~~~a---~~~a~~~~~~~~~~~~ 80 (282)
+-++.+|+-+.-. ....+.-.+..++.+.+ .|| +++.+|..-+=+ +-.+.+..+-..+.|+
T Consensus 19 e~~~~~Via~~aD-lGq~~~d~~~i~~kA~~--------------~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~Yp 83 (388)
T PF00764_consen 19 EEGGYEVIAVTAD-LGQPDEDLEAIEEKALK--------------LGASKHIVVDARDEFAEDYIFPAIKANALYEGRYP 83 (388)
T ss_dssp HTTTEEEEEEEEE-SSST-S-HHHHHHHHHH--------------HT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB-
T ss_pred hhcCceEEEEEEE-CCCcHHHHHHHHHHHHh--------------cCCceeeecchHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4455899877431 11222223344444444 699 999999874433 3333332222123222
Q ss_pred cCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEE-ecChhHHHHHHHHHHHhcCCCcEEEE
Q 038224 81 ADQFENLANFRAHYEGTGPEIWEQTGGELDAFVA-AAGTGGTVAGVSRFLQENNPNIKCFL 140 (282)
Q Consensus 81 ~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivv-pvG~GG~~aGi~~g~k~~~~~~~iig 140 (282)
+ . .....+.- ..-..|++++.+ .++|.. ++|-|--..=+-.+++.+.|+.+|++
T Consensus 84 L-~-tsl~RplI--a~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 84 L-S-TSLARPLI--AKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp --C-CCCHHHHH--HHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred c-c-ccchHHHH--HHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 2 1 11122221 233557777776 577777 56778888888889999999988874
No 126
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=41.98 E-value=41 Score=30.33 Aligned_cols=32 Identities=19% Similarity=0.079 Sum_probs=19.8
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+++.. ..+...+.+++++++
T Consensus 99 ~~~~~~GA~v~~v~~~~--~~~~~~~~a~~l~~~ 130 (290)
T TIGR01138 99 AAMRAYGAELILVTKEE--GMEGARDLALELANR 130 (290)
T ss_pred HHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHh
Confidence 57899999999997521 233444444444433
No 127
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=41.89 E-value=29 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred hHHHhcCCEEEEecC-CCCCChhhHHHHHHHHHHHHh
Q 038224 2 QILEALGATVERVRP-VSITHRDHFVNVARRRALEAN 37 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~-~~~~~~~~~~~~~~~~~~~~~ 37 (282)
.+|+++||+|++.++ ...+.++.....+..+..+.+
T Consensus 144 ~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~p 180 (362)
T KOG1252|consen 144 ILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTP 180 (362)
T ss_pred HHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCC
Confidence 578999999999987 344667778888888777754
No 128
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=41.69 E-value=42 Score=28.03 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEc
Q 038224 98 GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLID 142 (282)
Q Consensus 98 a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe 142 (282)
+.++.+| +..||.|+.=.|=|.+ ..+|+.+|+.++++-.
T Consensus 57 ~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 57 ARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEEE
Confidence 3344434 5579999988887654 4799999999988754
No 129
>PRK08198 threonine dehydratase; Provisional
Probab=41.35 E-value=38 Score=32.05 Aligned_cols=30 Identities=23% Similarity=0.108 Sum_probs=21.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.|||+|+.++. ..++.++.+++++++
T Consensus 110 ~~~~~~GA~Vi~~~~----~~~~~~~~a~~~~~~ 139 (404)
T PRK08198 110 KATRSYGAEVVLHGD----VYDEALAKAQELAEE 139 (404)
T ss_pred HHHHhCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999998854 446666666655544
No 130
>PRK07591 threonine synthase; Validated
Probab=41.06 E-value=38 Score=32.44 Aligned_cols=70 Identities=13% Similarity=-0.076 Sum_probs=36.3
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHH-hHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEe
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALEA-NELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFF 80 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~ 80 (282)
++|+++||+|+.++. ++++..+.+++++++. ... ......+-..++|.-.=+.+.+.++..+.+.+++
T Consensus 177 ~~~~~~GA~Vi~v~g----~~d~a~~~a~~~~~~~~~~~-------~~n~~~~p~~ieG~~Tia~Ei~eQl~~~~pD~iv 245 (421)
T PRK07591 177 VGTLVYGPTLVAVDG----NYDDVNRLCSELANEHEGWG-------FVNINLRPYYAEGSKTLGYEVAEQLGWRLPDQVV 245 (421)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHhcCCEE-------EecCCCCcccccchHHHHHHHHHHcCCCCCCEEE
Confidence 468999999999976 4455555555554442 000 0000123333455444566666665322244554
Q ss_pred cC
Q 038224 81 AD 82 (282)
Q Consensus 81 ~~ 82 (282)
+.
T Consensus 246 ~p 247 (421)
T PRK07591 246 AP 247 (421)
T ss_pred Ee
Confidence 43
No 131
>PRK07334 threonine dehydratase; Provisional
Probab=41.03 E-value=38 Score=32.11 Aligned_cols=30 Identities=27% Similarity=0.114 Sum_probs=20.6
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.++. ..+...+.+++++++
T Consensus 111 ~~~~~~GA~v~~~~~----~~~~~~~~a~~l~~~ 140 (403)
T PRK07334 111 ERTRGFGAEVVLHGE----TLDEARAHARELAEE 140 (403)
T ss_pred HHHHHcCCEEEEECc----CHHHHHHHHHHHHHh
Confidence 578999999998854 445555555555444
No 132
>PLN02565 cysteine synthase
Probab=40.93 E-value=43 Score=30.80 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=20.3
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+++.. ..+...+.+++++++
T Consensus 107 ~~i~~~GA~V~~~~~~~--~~~~~~~~a~~l~~~ 138 (322)
T PLN02565 107 IILLAFGAELVLTDPAK--GMKGAVQKAEEILAK 138 (322)
T ss_pred HHHHHcCCEEEEeCCCC--CcHHHHHHHHHHHHh
Confidence 57899999999987621 223344555554443
No 133
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=40.72 E-value=41 Score=31.66 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=21.2
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.+++.. ..+..++.+++++++
T Consensus 151 ~~lr~~GA~Vi~~~~~~--~~~~~~~~a~~l~~~ 182 (368)
T PLN02556 151 VTMRAFGAELVLTDPTK--GMGGTVKKAYELLES 182 (368)
T ss_pred HHHHHcCCEEEEECCCC--CccHHHHHHHHHHHh
Confidence 57899999999997521 223455556555544
No 134
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=40.64 E-value=2.6e+02 Score=25.81 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecC
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD 82 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~ 82 (282)
.++-+|++|+-+.+.. +..+--+.+++- ++-+.+||++++++.=..+.+.+.+.+.+.-. + .+|
T Consensus 67 A~krLG~~Vv~~~~~~-----sSs~KGEtL~DT--------~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~-p--vIN 130 (316)
T COG0540 67 AMKRLGADVVNFSDSE-----SSSKKGETLADT--------IRTLSAYGVDAIVIRHPEEGAARLLAEFSGVN-P--VIN 130 (316)
T ss_pred HHHHcCCcEEeecCCc-----ccccccccHHHH--------HHHHHhhCCCEEEEeCccccHHHHHHHhcCCC-c--eEE
Confidence 4678999999886632 112333334444 34577899999999999999999998876431 2 555
Q ss_pred CCCChHHHHhhhhcH-HHHHHHHhCCCCC----EEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCC
Q 038224 83 QFENLANFRAHYEGT-GPEIWEQTGGELD----AFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPP 144 (282)
Q Consensus 83 ~~~np~~~~gh~~t~-a~EI~eQl~~~pd----~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~ 144 (282)
.+|-..--.. +.-+ .+=|.++.+ .++ +|+.=.=.|=+.-.....++.++ .+|.-|-|.
T Consensus 131 aGDG~~qHPT-Q~LLDl~TI~~~~G-~~~gl~iaivGDlkhsRva~S~~~~L~~~g--a~v~lvsP~ 193 (316)
T COG0540 131 AGDGSHQHPT-QALLDLYTIREEFG-RLDGLKIAIVGDLKHSRVAHSNIQALKRFG--AEVYLVSPE 193 (316)
T ss_pred CCCCCCCCcc-HHHHHHHHHHHHhC-CcCCcEEEEEccccchHHHHHHHHHHHHcC--CEEEEECch
Confidence 5442110000 1111 566777776 343 22222225667777788888776 577777764
No 135
>PRK06352 threonine synthase; Validated
Probab=40.46 E-value=40 Score=31.34 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=19.8
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.++. ..+...+.+++++++
T Consensus 116 ~~~~a~GA~V~~~~~----~~~~~~~~a~~~~~~ 145 (351)
T PRK06352 116 AQAVMYGADIISIQG----NFDEALKSVRELAET 145 (351)
T ss_pred HHHHhcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999965 334444555544443
No 136
>PRK06815 hypothetical protein; Provisional
Probab=39.82 E-value=43 Score=30.56 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=18.5
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRA 33 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 33 (282)
++|+.+||+|+.+++ ..+.....+++++
T Consensus 108 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~~ 135 (317)
T PRK06815 108 DAIRALGAEVRLYGG----DALNAELAARRAA 135 (317)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHH
Confidence 578999999999976 2344444444443
No 137
>PRK08246 threonine dehydratase; Provisional
Probab=39.68 E-value=44 Score=30.49 Aligned_cols=30 Identities=33% Similarity=0.262 Sum_probs=19.7
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+++ .+++..+.+++++++
T Consensus 108 ~~~~~~GA~V~~~~~----~~~~~~~~a~~~~~~ 137 (310)
T PRK08246 108 ARLRALGAEVVVVGA----EYADALEAAQAFAAE 137 (310)
T ss_pred HHHHHCCCEEEEeCC----CHHHHHHHHHHHHHh
Confidence 578999999998865 334455444444433
No 138
>PLN03013 cysteine synthase
Probab=39.66 E-value=44 Score=32.18 Aligned_cols=21 Identities=10% Similarity=-0.105 Sum_probs=16.0
Q ss_pred CeEEEcCHHHHHHHHHHHHHh
Q 038224 194 DGAFRGTDREAVEMSRFLVKN 214 (282)
Q Consensus 194 d~~~~V~d~e~~~a~~~la~~ 214 (282)
+-.+..+....+.++.++++.
T Consensus 371 Gi~vG~SSGAalaAalkla~~ 391 (429)
T PLN03013 371 GLMVGISSGAAAAAAIKVAKR 391 (429)
T ss_pred CCEEecCHHHHHHHHHHHhhh
Confidence 445677888888888888753
No 139
>PRK06382 threonine dehydratase; Provisional
Probab=39.64 E-value=42 Score=31.90 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=20.5
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++++.|||+|+.+.+ ..++....+++++++
T Consensus 113 ~~~~~~GA~Vv~~~~----~~~~a~~~a~~la~~ 142 (406)
T PRK06382 113 NAVEAYGAHVILTGR----DYDEAHRYADKIAMD 142 (406)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999998865 345555555555444
No 140
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=39.41 E-value=66 Score=31.29 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred cCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHH
Q 038224 7 LGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGA 65 (282)
Q Consensus 7 ~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~ 65 (282)
+|.+|+...| +... +..++...+-.+|++.|-..||+||++-|-.||-.
T Consensus 251 lGv~vvv~dp------~kle----~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc 299 (545)
T KOG0360|consen 251 LGVQVVVDDP------EKLE----QIRQREQDITKERIKKILATGANVVLTTGGIDDMC 299 (545)
T ss_pred ccceEEEcCh------HHHH----HHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHH
Confidence 5677775544 3332 22333445677899999999999999999888753
No 141
>PRK07409 threonine synthase; Validated
Probab=39.03 E-value=43 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=18.7
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRA 33 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 33 (282)
+.|+.+||+|++++. .+++..+.++++.
T Consensus 119 ~~~~~~GA~Vi~~~~----~~~~~~~~a~~l~ 146 (353)
T PRK07409 119 AQAVMYGAEIIQIDG----NFDDALEIVRELA 146 (353)
T ss_pred HHHHhcCCEEEEECC----CHHHHHHHHHHHH
Confidence 467999999999965 3455444444433
No 142
>PRK05872 short chain dehydrogenase; Provisional
Probab=38.10 E-value=1.5e+02 Score=26.27 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=38.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEe-cCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFF-ADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~-~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+.++..+.+.++... ...++ .-...++..+ .....++.++++ ++|.+|..+|..
T Consensus 32 ~G~~V~~~~r~~~~l~~~~~~l~~~-~~~~~~~~Dv~d~~~v----~~~~~~~~~~~g-~id~vI~nAG~~ 96 (296)
T PRK05872 32 RGAKLALVDLEEAELAALAAELGGD-DRVLTVVADVTDLAAM----QAAAEEAVERFG-GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhcCC-CcEEEEEecCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCcC
Confidence 5999999988777665555444221 12222 1223343322 334556777776 799999999853
No 143
>PRK08813 threonine dehydratase; Provisional
Probab=38.01 E-value=47 Score=31.03 Aligned_cols=30 Identities=27% Similarity=0.151 Sum_probs=20.3
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+.|||+|+.+.. ++++....+++++++
T Consensus 121 ~~i~~~GAeVv~~g~----~~~~a~~~a~~la~~ 150 (349)
T PRK08813 121 AGVAHWGATVRQHGN----SYDEAYAFARELADQ 150 (349)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999998854 445555555555444
No 144
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=37.78 E-value=51 Score=28.55 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=20.4
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.++. .+++..+.+++++++
T Consensus 90 ~~~~~~Ga~v~~~~~----~~~~~~~~a~~~~~~ 119 (244)
T cd00640 90 AQMRALGAEVVLVPG----DFDDAIALAKELAEE 119 (244)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 578999999999876 234555555555444
No 145
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=37.68 E-value=97 Score=28.70 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCeEEEcCHHHHHHHHHHHHHh---c---CceEecc---hHHHHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcC
Q 038224 193 LDGAFRGTDREAVEMSRFLVKN---D---GLFLGSS---SAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYD 260 (282)
Q Consensus 193 ~d~~~~V~d~e~~~a~~~la~~---e---Gi~~eps---saaalaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~ 260 (282)
..+.+.|+.++-..-++.-... . +|++||. +|.|+|.....+.+-.++..++++-+||-.++.+.|.+
T Consensus 50 ~~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~ 126 (333)
T COG0836 50 IEEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLN 126 (333)
T ss_pred ccCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHH
Confidence 3466777766655444443332 2 3999997 45555444333333223668888889998877666654
No 146
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.42 E-value=1.9e+02 Score=26.49 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCC-CcEEEEEc
Q 038224 97 TGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNP-NIKCFLID 142 (282)
Q Consensus 97 ~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~-~~~iigVe 142 (282)
...++++..+ ++|.|+++ +.....|+..++++.+. ++.|+|..
T Consensus 199 ~~~~lL~~~p-di~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 199 TAEGILKAYP-DLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred HHHHHHHHCC-CCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 4556666655 78999987 33455578899988653 57778876
No 147
>PRK11761 cysM cysteine synthase B; Provisional
Probab=37.39 E-value=47 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=13.2
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.++.
T Consensus 103 ~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 103 AAMRAYGAELILVPK 117 (296)
T ss_pred HHHHHcCCEEEEeCC
Confidence 578999999999975
No 148
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=37.01 E-value=54 Score=29.57 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.1
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.+++
T Consensus 98 ~~~~~~GA~v~~~~~ 112 (299)
T TIGR01136 98 KLLRAYGAELILTPA 112 (299)
T ss_pred HHHHHcCCEEEEeCC
Confidence 578999999999865
No 149
>PRK08329 threonine synthase; Validated
Probab=37.00 E-value=50 Score=30.63 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=34.4
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEec
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFA 81 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~ 81 (282)
++|+.+||+|+.++. ..++..+.+++++++... -.-...-+-..++|.-.=+.+.+.++. .+.++++
T Consensus 144 ~~~~~~GA~v~~v~~----~~~~~~~~a~~l~~~~~~-------~~~~~~~np~~~eG~~t~~~Ei~eql~--~pD~vvv 210 (347)
T PRK08329 144 SLLSRLGAELHFVEG----DRMEVHEEAVKFSKRNNI-------PYVSHWLNPYFLEGTKTIAYEIYEQIG--VPDYAFV 210 (347)
T ss_pred HHHHHcCCEEEEECC----CHHHHHHHHHHHHHhcCC-------eeccCCCCchhhccchhHHHHHHHHcC--CCCEEEE
Confidence 578999999999975 223344444444433110 000011234455554444566665553 2455554
Q ss_pred C
Q 038224 82 D 82 (282)
Q Consensus 82 ~ 82 (282)
.
T Consensus 211 p 211 (347)
T PRK08329 211 P 211 (347)
T ss_pred e
Confidence 3
No 150
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=36.74 E-value=56 Score=29.26 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=13.2
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.++.
T Consensus 93 ~~~~~~Ga~v~~~~~ 107 (291)
T cd01561 93 KLLRALGAEVILTPE 107 (291)
T ss_pred HHHHHcCCEEEEeCC
Confidence 578999999999976
No 151
>PLN00011 cysteine synthase
Probab=36.64 E-value=55 Score=30.02 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=13.3
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.+++
T Consensus 109 ~~i~~~GA~V~~~~~ 123 (323)
T PLN00011 109 IILRALGAEVHLTDQ 123 (323)
T ss_pred HHHHHcCCEEEEECC
Confidence 578999999999876
No 152
>PRK12483 threonine dehydratase; Reviewed
Probab=35.77 E-value=51 Score=32.60 Aligned_cols=30 Identities=20% Similarity=-0.005 Sum_probs=23.4
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.++.|||+|+.+.+ ..++.++.+++++++
T Consensus 125 ~~~r~~GAeVil~g~----~~d~a~~~A~~la~e 154 (521)
T PRK12483 125 DGVRAHGGEVVLHGE----SFPDALAHALKLAEE 154 (521)
T ss_pred HHHHHCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999865 567777777777665
No 153
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=35.75 E-value=77 Score=29.67 Aligned_cols=31 Identities=23% Similarity=0.079 Sum_probs=25.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALEA 36 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (282)
+..+.|||||++... .+++....+++++++.
T Consensus 114 ~a~r~~GaeVil~g~----~~dda~~~a~~~a~~~ 144 (347)
T COG1171 114 DATRGYGAEVILHGD----NFDDAYAAAEELAEEE 144 (347)
T ss_pred HHHHhcCCEEEEECC----CHHHHHHHHHHHHHHc
Confidence 457899999998855 6788888888888874
No 154
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=35.45 E-value=49 Score=30.28 Aligned_cols=15 Identities=33% Similarity=0.186 Sum_probs=13.1
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.+++
T Consensus 91 ~~l~~~GA~v~~~~~ 105 (316)
T cd06448 91 EKLRDEGATVVVHGK 105 (316)
T ss_pred HHHHHcCCEEEEECC
Confidence 578999999999865
No 155
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=35.23 E-value=51 Score=30.06 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=20.6
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++++.+||+|+.++. ..++..+.+++++++
T Consensus 112 ~~~~~~GA~Vi~~~~----~~~~~~~~~~~~~~~ 141 (328)
T TIGR00260 112 AQALGYNAEVVAIDG----NFDDAQRLVKQLFGD 141 (328)
T ss_pred HHHHhcCcEEEEecC----CHHHHHHHHHHHHhh
Confidence 467899999999975 345555555555543
No 156
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=35.06 E-value=1.9e+02 Score=24.86 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=36.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.+...+...++.....-.++.-...++.. ......++.++++ ++|.+|..+|.
T Consensus 23 ~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~----~~~~~~~~~~~~g-~id~li~naG~ 86 (259)
T PRK08340 23 KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDD----LKNLVKEAWELLG-GIDALVWNAGN 86 (259)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHH----HHHHHHHHHHhcC-CCCEEEECCCC
Confidence 4999999987765544443333221111222222334332 3445566777766 79999998875
No 157
>PRK05638 threonine synthase; Validated
Probab=34.98 E-value=54 Score=31.55 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=20.6
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.++. .+++..+.+++++++
T Consensus 152 ~~~~~~GA~vi~v~~----~~~~~~~~a~~~~~~ 181 (442)
T PRK05638 152 IQMIAFGAKIIRYGE----SVDEAIEYAEELARL 181 (442)
T ss_pred HHHHhcCcEEEEECC----CHHHHHHHHHHHHHh
Confidence 478999999999965 445555555555433
No 158
>PRK08703 short chain dehydrogenase; Provisional
Probab=34.48 E-value=95 Score=26.32 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=35.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCccc--CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSD--CTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~--~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-+.......++... ....++.....+.. . .....+..++.+++++.+|.||..+|.
T Consensus 29 ~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~-~-~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 29 AGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAE-E-KEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred cCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccc-h-HHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 5999999987765443333332111 01112211111111 1 123445567777774479999998864
No 159
>PRK09224 threonine dehydratase; Reviewed
Probab=34.27 E-value=56 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=22.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.++.+||+|+.+.. .+++..+.+++++++
T Consensus 108 ~~~r~~GA~Vi~~g~----~~~~a~~~a~~l~~~ 137 (504)
T PRK09224 108 DAVRAFGGEVVLHGD----SFDEAYAHAIELAEE 137 (504)
T ss_pred HHHHhCCCEEEEECC----CHHHHHHHHHHHHHh
Confidence 468999999999864 456666666666655
No 160
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.20 E-value=94 Score=27.46 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred hcCCeEEEeCCChhHHHHHhccCcccCCCcEec---CCCCChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChh
Q 038224 49 KDGKELEHINGYGSDGAIQSSKFPSDCTGGFFA---DQFENLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTG 119 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~---~~~~np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~G 119 (282)
..|-.|.+++++.+-+...+.++.+. .+.-+. ++|-+|. . -.+|.++... +||.++++.|+-
T Consensus 103 ~~~~~v~llG~~~~v~~~a~~~l~~~-y~l~i~g~~~Gyf~~~---e-----~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 103 KEGTPVFLVGGKPEVLAQTEAKLRTQ-WNVNIVGSQDGYFTPE---Q-----RQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHHH-hCCEEEEEeCCCCCHH---H-----HHHHHHHHHhcCCCEEEEECCCc
Confidence 46889999999888666666655433 222221 3333221 1 1235555542 599999999874
No 161
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=33.92 E-value=98 Score=26.62 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=36.0
Q ss_pred hhcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCC
Q 038224 94 YEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPG 145 (282)
Q Consensus 94 ~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~ 145 (282)
|...++++-+++. +...+|++-|++|.+-.+.++..+.+ -+++|+-|..
T Consensus 32 ~~~~a~~lg~~la-~~g~~V~tGG~~GiMea~~~gA~~~g--g~~vGi~p~~ 80 (205)
T COG1611 32 YYELARELGRELA-KRGLLVITGGGPGVMEAVARGALEAG--GLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHHH-hCCcEEEeCCchhhhhHHHHHHHHcC--CeEEEecCCC
Confidence 4555666666665 33488888888899988899988654 4789998853
No 162
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.88 E-value=55 Score=32.15 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=22.9
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++++.+||+|+.+.. .++...+.+++++++
T Consensus 105 ~~~r~~GA~Vvl~g~----~~d~a~~~a~~la~~ 134 (499)
T TIGR01124 105 DAVRGFGGEVVLHGA----NFDDAKAKAIELSQE 134 (499)
T ss_pred HHHHhCCCEEEEeCc----CHHHHHHHHHHHHHh
Confidence 468999999998854 567777777776665
No 163
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=33.38 E-value=59 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=24.2
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHH
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARRRALEA 36 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (282)
.++.|||.|++|++ .-++..+.++++.++.
T Consensus 114 a~~~Yga~ii~~e~----~~~sRE~va~~ltee~ 143 (323)
T KOG1251|consen 114 ATRGYGANIIFCEP----TVESRESVAKDLTEET 143 (323)
T ss_pred HHHhcCceEEEecC----ccchHHHHHHHHHHhc
Confidence 57899999999988 3356777888888874
No 164
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=33.22 E-value=41 Score=31.62 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=42.7
Q ss_pred HHHhcC-CeEEEeCCCh---hHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHH
Q 038224 46 AVDKDG-KELEHINGYG---SDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121 (282)
Q Consensus 46 ~~~~~G-A~v~~~~g~~---~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~ 121 (282)
+|+.+| .++.+|+.+| -++.+.++++.... +.-.+.-..-|.+-.. +..+..+|.+. +||.|+-.+ .|..
T Consensus 128 ~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~-GgevvgE~Y~plg~td-~~~ii~~I~~~---~Pd~V~stl-vG~s 201 (363)
T PF13433_consen 128 LLENFGAKRFYLVGSDYVYPRESNRIIRDLLEAR-GGEVVGERYLPLGATD-FDPIIAEIKAA---KPDFVFSTL-VGDS 201 (363)
T ss_dssp HHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEEEE-S-HHH-HHHHHHHHHHH---T-SEEEEE---TTC
T ss_pred HHhccCCceEEEecCCccchHHHHHHHHHHHHHc-CCEEEEEEEecCCchh-HHHHHHHHHhh---CCCEEEEeC-cCCc
Confidence 355789 8999999987 45556666554443 2222221111222222 34455566544 588665554 5566
Q ss_pred HHHHHHHHHhcC
Q 038224 122 VAGVSRFLQENN 133 (282)
Q Consensus 122 ~aGi~~g~k~~~ 133 (282)
...+++.+++.+
T Consensus 202 ~~aF~r~~~~aG 213 (363)
T PF13433_consen 202 NVAFYRAYAAAG 213 (363)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 667888887653
No 165
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=33.14 E-value=59 Score=30.99 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.9
Q ss_pred HHHhcCCEEEEecCC
Q 038224 3 ILEALGATVERVRPV 17 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~ 17 (282)
.|+++||+|+.+++.
T Consensus 151 ~m~~lGA~Vv~v~~g 165 (397)
T PRK04346 151 RMKLLGAEVVPVTSG 165 (397)
T ss_pred HHHHCCCEEEEECCC
Confidence 589999999999763
No 166
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=32.77 E-value=82 Score=27.02 Aligned_cols=62 Identities=10% Similarity=-0.103 Sum_probs=39.7
Q ss_pred EEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHH
Q 038224 55 EHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTV 122 (282)
Q Consensus 55 ~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~ 122 (282)
++.+.+...|+.+|....... +-+.+-+.|-|.....| -.++++-.+ .-|.|++|.-+|||-
T Consensus 66 vl~d~dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~----i~~~~~~~~-d~dvviaP~~gGGTn 127 (210)
T COG1920 66 VLADPDLNTAINAALDEIPLP-SEVIVVMADLPLLSPEH----IERALSAAK-DADVVIAPGRGGGTN 127 (210)
T ss_pred eeeccchHHHHHHHHhhCCCC-cceEEEecccccCCHHH----HHHHHHhcC-CCcEEEecCCCCceE
Confidence 445555677888887766553 45666777777644433 345555554 467999998777764
No 167
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=32.37 E-value=1e+02 Score=25.82 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=31.6
Q ss_pred hcHHHHHHHHhCCCCCEEEEecCh-hHHHHHHHHHHHhcCCCcEEEEEcCCC
Q 038224 95 EGTGPEIWEQTGGELDAFVAAAGT-GGTVAGVSRFLQENNPNIKCFLIDPPG 145 (282)
Q Consensus 95 ~t~a~EI~eQl~~~pd~ivvpvG~-GG~~aGi~~g~k~~~~~~~iigVe~~~ 145 (282)
...+.|+-+.+. +.++.++.-|+ .|++..++++.++.+ -+++||-|..
T Consensus 18 ~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~ 66 (178)
T TIGR00730 18 KELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchh
Confidence 334455555554 33565665554 799999999998754 4789998753
No 168
>PRK07791 short chain dehydrogenase; Provisional
Probab=32.12 E-value=2.4e+02 Score=24.89 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=17.1
Q ss_pred hcHHHHHHHHhCCCCCEEEEecChh
Q 038224 95 EGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 95 ~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.....++.++++ ++|.+|..+|..
T Consensus 80 ~~~~~~~~~~~g-~id~lv~nAG~~ 103 (286)
T PRK07791 80 ANLVDAAVETFG-GLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHhcC-CCCEEEECCCCC
Confidence 445566667765 799999988753
No 169
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=32.08 E-value=3.2e+02 Score=23.23 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=69.9
Q ss_pred HHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCchhhhhhccccchhhhhcCccccCCCCccccccCCC
Q 038224 103 EQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGIN 182 (282)
Q Consensus 103 eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~ 182 (282)
..|.-.|+-++.=+|.|+-..++-.. ...|..|+|++|-.....-.. +.+ . +.+..+.-.+..|-+..
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~-~~N-----~----~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELI-ERN-----A----ARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHH-HHH-----H----HHhCCCcEEEEeccchH
Confidence 34444677788888888766665444 568999999999865432111 100 0 11111111233444322
Q ss_pred CCcH--hhHhhcCCeEEEcCHHHHHHHHHHHHHhcCceEe-cchHHHHHHHHHHHHhcCCCCEEEEEecCCC
Q 038224 183 RLTQ--NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLG-SSSAMNCVGAVRVAQSLGPGHTIVTILCDSG 251 (282)
Q Consensus 183 ~~~~--~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~e-pssaaalaal~~l~~~~~~~~~Vv~v~tGgg 251 (282)
..+. ..+.-.+++. .+.+++++++....+.-|-++= -..==+++.+++..++++-. .|+.+.=..+
T Consensus 96 ~L~~~~~~daiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~ 164 (187)
T COG2242 96 ALPDLPSPDAIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRG 164 (187)
T ss_pred hhcCCCCCCEEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecc
Confidence 1110 1222234444 6788899998888776665443 33333444455544544322 5555544443
No 170
>PRK06202 hypothetical protein; Provisional
Probab=31.80 E-value=66 Score=27.65 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc
Q 038224 109 LDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS 147 (282)
Q Consensus 109 pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~ 147 (282)
...+=+.+|+|....-+...+++.++..+++||+++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~ 100 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRA 100 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHH
Confidence 346677888888777676666666777899999997543
No 171
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=31.64 E-value=1.1e+02 Score=26.63 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=34.2
Q ss_pred HhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHH
Q 038224 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIW 102 (282)
Q Consensus 42 ~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~ 102 (282)
+-+++....||+.++.+|.-.+..+.|.+. +..++.+..+|.-++. -...|.+++
T Consensus 76 ~q~~~a~~aGa~fiVsP~~~~ev~~~a~~~-----~ip~~PG~~TptEi~~-Ale~G~~~l 130 (211)
T COG0800 76 EQARQAIAAGAQFIVSPGLNPEVAKAANRY-----GIPYIPGVATPTEIMA-ALELGASAL 130 (211)
T ss_pred HHHHHHHHcCCCEEECCCCCHHHHHHHHhC-----CCcccCCCCCHHHHHH-HHHcChhhe
Confidence 445666778888888888888888877543 4556666556654443 233344443
No 172
>PRK09701 D-allose transporter subunit; Provisional
Probab=31.50 E-value=3.7e+02 Score=23.86 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCC--CcEEEEEcCC
Q 038224 97 TGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNP--NIKCFLIDPP 144 (282)
Q Consensus 97 ~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~--~~~iigVe~~ 144 (282)
...+++++.+ +||+|++. +..+..|+..++++.+. ++.|+|++..
T Consensus 206 ~~~~ll~~~~-~~~~I~~~--~d~~A~g~~~al~~~G~~~dv~vvg~d~~ 252 (311)
T PRK09701 206 VATNVLQRNP-NIKAIYCA--NDTMAMGVAQAVANAGKTGKVLVVGTDGI 252 (311)
T ss_pred HHHHHHHhCC-CCCEEEEC--CcchHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 3455655544 68988865 44567789999988654 4667777664
No 173
>PRK07024 short chain dehydrogenase; Provisional
Probab=31.43 E-value=2.8e+02 Score=23.73 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=35.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-+...+...++....+-.++.-...++.. ......++.++++ .+|.+|..+|.
T Consensus 25 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----i~~~~~~~~~~~g-~id~lv~~ag~ 88 (257)
T PRK07024 25 QGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADA----LAAAAADFIAAHG-LPDVVIANAGI 88 (257)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHH----HHHHHHHHHHhCC-CCCEEEECCCc
Confidence 5999999987765544443333211111122223344432 2334556666666 78999998875
No 174
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=31.25 E-value=1.3e+02 Score=28.59 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHHHH---HhcCCCCEEEEEecCCCcchhhh
Q 038224 226 NCVGAVRVA---QSLGPGHTIVTILCDSGMRHLSK 257 (282)
Q Consensus 226 alaal~~l~---~~~~~~~~Vv~v~tGgg~ky~~~ 257 (282)
++.+..++. +.+.+++.|++++||||.-.++.
T Consensus 95 s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~ 129 (422)
T COG2379 95 SLKASRRLLELVSGLTEDDLVIVLISGGGSALLEL 129 (422)
T ss_pred hHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccC
Confidence 344444443 33568899999999999876653
No 175
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.18 E-value=1.4e+02 Score=25.53 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=35.1
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcE-ecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGF-FADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~-~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-+.......++........ +.....++. . ......++.++++ ++|++|..+|.
T Consensus 31 ~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~-~~~~~~~~~~~~~-~id~li~~ag~ 95 (252)
T PRK07035 31 QGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME---Q-IDALFAHIRERHG-RLDILVNNAAA 95 (252)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH---H-HHHHHHHHHHHcC-CCCEEEECCCc
Confidence 599999998765554444333322111122 222233332 2 2344556666666 68999988874
No 176
>PLN02618 tryptophan synthase, beta chain
Probab=31.17 E-value=63 Score=30.94 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=12.6
Q ss_pred HHHhcCCEEEEecC
Q 038224 3 ILEALGATVERVRP 16 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~ 16 (282)
+|++|||+|+.++.
T Consensus 164 ~mr~lGA~Vi~v~~ 177 (410)
T PLN02618 164 RMRLLGAEVRPVHS 177 (410)
T ss_pred HHHHCCCEEEEEeC
Confidence 68999999999965
No 177
>PRK06260 threonine synthase; Validated
Probab=31.14 E-value=67 Score=30.40 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=20.1
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+++||+|+.++. .+++..+.+++++++
T Consensus 156 ~~~~~~GA~vi~v~~----~~~~~~~~a~~~~~~ 185 (397)
T PRK06260 156 AQALLHGAKVLEVDG----NFDDALDMVVELAKE 185 (397)
T ss_pred HHHHhcCCEEEEECC----cHHHHHHHHHHHHhh
Confidence 357899999999965 445555555554443
No 178
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=30.82 E-value=1.3e+02 Score=26.15 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=40.5
Q ss_pred HhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecC
Q 038224 48 DKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG 117 (282)
Q Consensus 48 ~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG 117 (282)
...||+|...+-+...|.+.|..+-.-.....|--.-+++. +...+-.|....++ .|+.+|-+.|
T Consensus 35 a~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~----~v~~~l~e~~k~~g-~psvlVncAG 99 (256)
T KOG1200|consen 35 AKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAH----DVQNTLEEMEKSLG-TPSVLVNCAG 99 (256)
T ss_pred HhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHH----HHHHHHHHHHHhcC-CCcEEEEcCc
Confidence 34699999999999988888877733111122222223332 23344566666666 8999988876
No 179
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=30.35 E-value=1.6e+02 Score=25.50 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=36.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+-++..+...++....... ++.-...++.. ......++.++++ .+|++|..+|..
T Consensus 33 ~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~~~~-~id~li~~ag~~ 98 (265)
T PRK07097 33 AGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDG----VQAMVSQIEKEVG-VIDILVNNAGII 98 (265)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHH----HHHHHHHHHHhCC-CCCEEEECCCCC
Confidence 59999999776655443333332211112 22222333332 2334556777765 799999999864
No 180
>PRK08643 acetoin reductase; Validated
Probab=30.01 E-value=1.6e+02 Score=25.07 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=37.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+-+...+...++...... .++.....++.. ......++.++++ ++|.+|...|..
T Consensus 25 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~~~~-~id~vi~~ag~~ 90 (256)
T PRK08643 25 DGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQ----VFAAVRQVVDTFG-DLNVVVNNAGVA 90 (256)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCCC
Confidence 5999999987655444433333211111 223333455543 2344567777765 799999998753
No 181
>PLN02550 threonine dehydratase
Probab=29.98 E-value=71 Score=32.14 Aligned_cols=30 Identities=47% Similarity=0.461 Sum_probs=22.2
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.++.|||+|+.+.. ..++..+.+++++++
T Consensus 197 ~~~r~~GAeVvl~g~----~~dea~~~A~~la~e 226 (591)
T PLN02550 197 QSVERLGATVVLVGD----SYDEAQAYAKQRALE 226 (591)
T ss_pred HHHHHcCCEEEEeCC----CHHHHHHHHHHHHHh
Confidence 468999999999964 456667677666655
No 182
>PLN02569 threonine synthase
Probab=29.94 E-value=74 Score=31.17 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=21.9
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
+.|+++||+|+.+++ .+++..+.++++.++
T Consensus 228 ~qi~a~GA~Vi~v~g----~~d~a~~~a~e~~~~ 257 (484)
T PLN02569 228 VQPIANGALVLSIDT----DFDGCMRLIREVTAE 257 (484)
T ss_pred HHHHhcCCEEEEECC----CHHHHHHHHHHHHHH
Confidence 468999999999976 556666666665544
No 183
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=29.67 E-value=3.5e+02 Score=23.02 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=34.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCccc-CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSD-CTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~-~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+..+-+.......++... .+-.++.....++..+ .....++.++++ .+|.||..+|.
T Consensus 35 ~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i----~~~~~~~~~~~~-~id~vi~~ag~ 99 (259)
T PRK08213 35 AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADI----ERLAEETLERFG-HVDILVNNAGA 99 (259)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCC
Confidence 5999999887654432222222111 0112333344555443 233456666665 68999999875
No 184
>PRK06720 hypothetical protein; Provisional
Probab=29.53 E-value=1.7e+02 Score=23.95 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=35.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+.+.....+.++...... .++.-...++ .. ...+..++.++++ ++|.+|..+|.
T Consensus 39 ~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~---~~-v~~~v~~~~~~~G-~iDilVnnAG~ 103 (169)
T PRK06720 39 QGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQ---GD-WQRVISITLNAFS-RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH---HH-HHHHHHHHHHHcC-CCCEEEECCCc
Confidence 5899999987655443333333211111 2222222232 22 3455566777776 79999998763
No 185
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=29.19 E-value=1.7e+02 Score=25.90 Aligned_cols=42 Identities=10% Similarity=-0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHh
Q 038224 27 NVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQS 68 (282)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a 68 (282)
...+...++..+.+.++++.|...|++|+++.+..++-...-
T Consensus 106 ~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~ 147 (261)
T cd03334 106 LSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDL 147 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHH
Confidence 344555556666788899999999999999999988765543
No 186
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=28.86 E-value=1.4e+02 Score=28.43 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=47.9
Q ss_pred ChHHHhcCCEEEEecCCC-CCChhhHHHHHH--HHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCC
Q 038224 1 SQILEALGATVERVRPVS-ITHRDHFVNVAR--RRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTG 77 (282)
Q Consensus 1 ~~~~~~~Ga~v~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~ 77 (282)
+++|.-+||+|+.+++.. .+......-... ..... ...|-+-+.++=.-++..+...+++++.
T Consensus 26 g~~LaDlGAeVIKVE~P~~gD~~R~~~~~~~~s~~f~~------------~nR~K~Sv~lDlk~~egre~~~~Lv~~A-- 91 (396)
T COG1804 26 GQLLADLGAEVIKVERPGGGDDTRVFAPVADGSAYFLA------------LNRGKRSVALDLKTEEGREILLRLVAGA-- 91 (396)
T ss_pred HhHHHHcCCcEEEecCCCCCCchhccccccCcchHHHH------------hcCCceEEEeecCCHhHHHHHHHHHhhC--
Confidence 367888999999997532 211111000000 01111 1234555666666666666666665442
Q ss_pred cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEec
Q 038224 78 GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAA 116 (282)
Q Consensus 78 ~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpv 116 (282)
-+.+..|- |-.. . .-.+++|-+.+.+ |..|+|.+
T Consensus 92 DVlienfr-pG~l-~-rlGl~ye~L~~~N--P~LIy~si 125 (396)
T COG1804 92 DVLIENFR-PGVL-E-RLGLGYEALRAIN--PRLIYCSI 125 (396)
T ss_pred ceehcccc-hhHH-H-HhCCCHHHHHhhC--CCeEEEEE
Confidence 22333332 3222 2 3455677766654 56666654
No 187
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.69 E-value=3.2e+02 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=35.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+ ++..+...++... .-.++.-...++.. ......++.++++ ++|.+|..+|..
T Consensus 32 ~G~~Vi~~~r~-~~~~~~~~~~~~~-~~~~~~~Dl~~~~~----v~~~~~~~~~~~g-~iD~lv~nAg~~ 94 (252)
T PRK06079 32 QGATVIYTYQN-DRMKKSLQKLVDE-EDLLVECDVASDES----IERAFATIKERVG-KIDGIVHAIAYA 94 (252)
T ss_pred CCCEEEEecCc-hHHHHHHHhhccC-ceeEEeCCCCCHHH----HHHHHHHHHHHhC-CCCEEEEccccc
Confidence 49999998655 3333333333221 11223222334332 3445567777776 799999988753
No 188
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.29 E-value=3.3e+02 Score=23.28 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=32.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+.-+ ++..+............ ++.....++.. ...+..++.++++ .+|++|...|.
T Consensus 38 ~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----i~~~~~~~~~~~g-~id~li~~ag~ 101 (258)
T PRK06935 38 AGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPES----AEKVVKEALEEFG-KIDILVNNAGT 101 (258)
T ss_pred CCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCC
Confidence 59999988665 32222221111111111 22222333322 2344567777765 78999998865
No 189
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=27.97 E-value=3.3e+02 Score=23.15 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=33.8
Q ss_pred cCCeEEEeCCChhHHHHHhccCccc-CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSD-CTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~-~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+.+...+...++... .+-.++.....|+.. ......++.++++ .+|.+|..+|..
T Consensus 33 ~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~~d~li~~ag~~ 98 (255)
T PRK07523 33 AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDA----VRAAIDAFEAEIG-PIDILVNNAGMQ 98 (255)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHH----HHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 4899998876655433322222111 011122222333322 2334455656655 799999999864
No 190
>PRK07814 short chain dehydrogenase; Provisional
Probab=27.79 E-value=1.9e+02 Score=25.01 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=35.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEe-cCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFF-ADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~-~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+..+-+...+...++........+ .....|+..+ .....++.++++ ++|.||..+|.
T Consensus 33 ~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~vi~~Ag~ 97 (263)
T PRK07814 33 AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEAT----AGLAGQAVEAFG-RLDIVVNNVGG 97 (263)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCC
Confidence 6999999988755443333222111112222 2223444322 334556666665 79999999875
No 191
>PRK06138 short chain dehydrogenase; Provisional
Probab=27.77 E-value=3e+02 Score=23.16 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=36.6
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+..+-+.......+...+..-.++.-...|+..+ .....++.++++ ++|.||..+|..
T Consensus 28 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~i~~~~~-~id~vi~~ag~~ 92 (252)
T PRK06138 28 EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAV----EALVDFVAARWG-RLDVLVNNAGFG 92 (252)
T ss_pred CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCCC
Confidence 59999999887655444333332111111222233444322 334556777776 799999998853
No 192
>PRK07774 short chain dehydrogenase; Provisional
Probab=27.66 E-value=2e+02 Score=24.39 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=35.7
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+.+.......++....... ++.....++.. ......++.++++ .+|.||..+|..
T Consensus 29 ~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~~~~-~id~vi~~ag~~ 94 (250)
T PRK07774 29 EGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDS----AKAMADATVSAFG-GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHH----HHHHHHHHHHHhC-CCCEEEECCCCc
Confidence 59999999877544333322221111122 22222333322 2344556777776 799999999853
No 193
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=27.59 E-value=81 Score=30.10 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=13.1
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+++||+|+.+++
T Consensus 154 ~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 154 FRMKLLGAEVVPVTR 168 (402)
T ss_pred HHHHHcCCEEEEEcC
Confidence 378999999999975
No 194
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=27.56 E-value=1.7e+02 Score=27.29 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHH
Q 038224 3 ILEALGATVERVRPVSITHRDHFVN 27 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~ 27 (282)
++..+|++|+++.|..+..++...+
T Consensus 173 ~~~~~g~~v~~~~P~~~~~~~~~~~ 197 (338)
T PRK02255 173 IATKMGMDFVHFGPKGYQLPEEHLA 197 (338)
T ss_pred HHHhCCCEEEEECCCccccCHHHHH
Confidence 3466788888887755433444443
No 195
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=27.28 E-value=1.2e+02 Score=29.25 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=36.0
Q ss_pred hcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcC
Q 038224 95 EGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDP 143 (282)
Q Consensus 95 ~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~ 143 (282)
.+++ .|.+.++-++=-||=+.|-..+++.+.+||+.+.|+++|-||=-
T Consensus 101 gSTA-~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIl 148 (451)
T COG1797 101 GSTA-DLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVIL 148 (451)
T ss_pred CCHH-HHHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3443 78888874444455566677899999999999999999988844
No 196
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.19 E-value=1.8e+02 Score=24.49 Aligned_cols=65 Identities=8% Similarity=0.126 Sum_probs=35.8
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+-++..+...++....... ++.....++..+ .....++.++++ .+|.||..+|..
T Consensus 30 ~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~~ 95 (239)
T PRK07666 30 EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEV----TAAIEQLKNELG-SIDILINNAGIS 95 (239)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHH----HHHHHHHHHHcC-CccEEEEcCccc
Confidence 59999999876554433333331111112 222233444332 334556667766 789999988753
No 197
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=26.98 E-value=1.9e+02 Score=24.50 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=36.6
Q ss_pred hcCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 49 KDGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
..|++|+.+..+-+...+...++....... ++.-...++.. ......++.++++ .+|.+|...|.
T Consensus 22 ~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~----i~~~~~~~~~~~~-~id~vi~~ag~ 87 (254)
T TIGR02415 22 KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQ----VFSAIDQAAEKFG-GFDVMVNNAGV 87 (254)
T ss_pred HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCc
Confidence 469999999877544433333322111112 22233344432 2344567777776 78999998875
No 198
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.89 E-value=2.6e+02 Score=22.38 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCCEEEEecChhH-------------HHHHHHHHHHhcCCCcEEEEEcCC
Q 038224 108 ELDAFVAAAGTGG-------------TVAGVSRFLQENNPNIKCFLIDPP 144 (282)
Q Consensus 108 ~pd~ivvpvG~GG-------------~~aGi~~g~k~~~~~~~iigVe~~ 144 (282)
+||.|++.+|+-- .+..+..-+++.+|+++|+.+.|.
T Consensus 56 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 56 PPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 6999999998542 222333334445688888888764
No 199
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=26.88 E-value=1.6e+02 Score=23.95 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHhcCCEEEEecCCCC--CChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCCChhHHHHHh
Q 038224 3 ILEALGATVERVRPVSI--THRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYGSDGAIQS 68 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a 68 (282)
++..+|.+|.++.|.+. +...+..+.+++.+++ .|.++..+ .+.++++..|
T Consensus 22 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--------------~g~~i~~~-~~~~e~l~~a 74 (158)
T PF00185_consen 22 LLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKK--------------NGGKITIT-DDIEEALKGA 74 (158)
T ss_dssp HHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHH--------------HTTEEEEE-SSHHHHHTT-
T ss_pred HHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHH--------------hCCCeEEE-eCHHHhcCCC
Confidence 56789999999988652 2222455555554444 57888888 7777777553
No 200
>PRK07063 short chain dehydrogenase; Provisional
Probab=26.76 E-value=1.6e+02 Score=25.20 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=36.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcc--cCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPS--DCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~--~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+.+...+.+.++.. ..... ++.....++.. ......++.++++ .+|.+|..+|.
T Consensus 30 ~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~~~g-~id~li~~ag~ 96 (260)
T PRK07063 30 EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAAS----VAAAVAAAEEAFG-PLDVLVNNAGI 96 (260)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHH----HHHHHHHHHHHhC-CCcEEEECCCc
Confidence 599999998776554444433321 11111 23233344432 2334556666665 79999999885
No 201
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=3.5e+02 Score=23.86 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=48.7
Q ss_pred hHHHHHhHHHHHhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEec
Q 038224 37 NELASKRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAA 116 (282)
Q Consensus 37 ~~~~~~~~~~~~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpv 116 (282)
.+.++||-.|.+. |.|+..+|+-..|.-.+..++....+.. .+..++ .+.||..||...+...++|.
T Consensus 196 arFvVeKAeQqk~--aavIsAEGds~aA~li~~sla~aG~gLi------elrrlE-----Aa~dia~~Ls~s~nv~YLp~ 262 (271)
T KOG3083|consen 196 ARFVVEKAEQQKK--AAVISAEGDSKAAELIANSLATAGDGLI------ELRRLE-----AAEDIAYQLSRSRNVTYLPA 262 (271)
T ss_pred HHHHHHHHhhhhh--hheeecccchHHHHHHHHHHhhcCCcee------eehhhh-----hHHHHHHHHhcCCCceeccC
Confidence 3456778888887 8999999999988877777765422221 122333 36788899987788899996
Q ss_pred Ch
Q 038224 117 GT 118 (282)
Q Consensus 117 G~ 118 (282)
|.
T Consensus 263 g~ 264 (271)
T KOG3083|consen 263 GQ 264 (271)
T ss_pred Cc
Confidence 54
No 202
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=26.38 E-value=2.6e+02 Score=20.51 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=25.8
Q ss_pred CCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc
Q 038224 108 ELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS 147 (282)
Q Consensus 108 ~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~ 147 (282)
..|.+|+-...|...--++-.++....+|-|+.|+..+.-
T Consensus 11 ~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~ 50 (84)
T PF11760_consen 11 RYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRF 50 (84)
T ss_dssp C-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--E
T ss_pred CCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCE
Confidence 5788888888888888888888888888999999998863
No 203
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=26.29 E-value=4.6e+02 Score=23.32 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=39.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCC--ChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFE--NLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~--np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
-|++|+++..+.+.-.+.+.++.+ +...+...| |+..+ ......+.++++ ++|.+|--.|.
T Consensus 29 ~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~----~~~i~~~~~~~g-~iDiLvNNAGl 91 (246)
T COG4221 29 AGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAV----EAAIEALPEEFG-RIDILVNNAGL 91 (246)
T ss_pred CCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHH----HHHHHHHHHhhC-cccEEEecCCC
Confidence 499999999999888888888753 233343333 33222 222334445555 79999988774
No 204
>PLN02253 xanthoxin dehydrogenase
Probab=26.29 E-value=3.4e+02 Score=23.51 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=35.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+.+...+.+.++... ... ++.-...++..+ .....++.++++ ++|.+|..+|..
T Consensus 41 ~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~----~~~~~~~~~~~g-~id~li~~Ag~~ 105 (280)
T PLN02253 41 HGAKVCIVDLQDDLGQNVCDSLGGE-PNVCFFHCDVTVEDDV----SRAVDFTVDKFG-TLDIMVNNAGLT 105 (280)
T ss_pred cCCEEEEEeCCHHHHHHHHHHhcCC-CceEEEEeecCCHHHH----HHHHHHHHHHhC-CCCEEEECCCcC
Confidence 5999999977655444443333211 122 222223344322 334456666765 799999998853
No 205
>PRK08589 short chain dehydrogenase; Validated
Probab=26.04 E-value=1.8e+02 Score=25.40 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=36.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+ ++..+...++....... ++.-...++.. ......++.++++ ++|.+|..+|..
T Consensus 29 ~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~~~~~~~g-~id~li~~Ag~~ 93 (272)
T PRK08589 29 EGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQ----VKDFASEIKEQFG-RVDVLFNNAGVD 93 (272)
T ss_pred CCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHH----HHHHHHHHHHHcC-CcCEEEECCCCC
Confidence 59999999887 55544444432211111 22222333322 2344556666666 799999998853
No 206
>PRK12743 oxidoreductase; Provisional
Probab=25.93 E-value=2e+02 Score=24.59 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=35.3
Q ss_pred cCCeEEEeCC-ChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHING-YGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g-~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.. +-++..+...++...... .++.....++..+ .....++.++++ ++|.+|...|..
T Consensus 25 ~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~~-~id~li~~ag~~ 91 (256)
T PRK12743 25 QGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEG----AQALDKLIQRLG-RIDVLVNNAGAM 91 (256)
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCCC
Confidence 5999988754 333333333222111111 2222334454333 334567777776 799999998853
No 207
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=25.60 E-value=1e+02 Score=29.47 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.0
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+.+||+|+.+++
T Consensus 102 ~~~~~~GA~v~~~~~ 116 (454)
T TIGR01137 102 DVLKALGAEIVRTPT 116 (454)
T ss_pred HHHHHCCCEEEEcCC
Confidence 578999999999965
No 208
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.55 E-value=5.6e+02 Score=23.94 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=45.9
Q ss_pred hHHHHHhcCCeEEEeCCC----------h-----hHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCC
Q 038224 43 RRRAVDKDGKELEHINGY----------G-----SDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG 107 (282)
Q Consensus 43 ~~~~~~~~GA~v~~~~g~----------~-----~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~ 107 (282)
+++..-.+||+.|.+++. | .++++.|.+..+ +-++-+|.+-.+.... + ..+.+.++..
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk--k~~V~~N~~~~~~~~~----~-~~~~l~~l~e 90 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK--KVYVAVNTLLHNDELE----T-LERYLDRLVE 90 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCC--eEEEEeccccccchhh----H-HHHHHHHHHH
Confidence 344455689999999976 1 223333333321 2244444433332222 2 2344444432
Q ss_pred -CCCEEEEecChhHHHHHHHHHHHhcCCCcEEE
Q 038224 108 -ELDAFVAAAGTGGTVAGVSRFLQENNPNIKCF 139 (282)
Q Consensus 108 -~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~ii 139 (282)
.+|+|+++= -|+...+++.+|+.+++
T Consensus 91 ~GvDaviv~D------pg~i~l~~e~~p~l~ih 117 (347)
T COG0826 91 LGVDAVIVAD------PGLIMLARERGPDLPIH 117 (347)
T ss_pred cCCCEEEEcC------HHHHHHHHHhCCCCcEE
Confidence 489998863 46677778888775544
No 209
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.51 E-value=3.7e+02 Score=23.13 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCC-CcEEEEEcCC
Q 038224 98 GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNP-NIKCFLIDPP 144 (282)
Q Consensus 98 a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~-~~~iigVe~~ 144 (282)
..+++++.+ .||+||+. +..+..|+..++++.+. ++.|+|.+..
T Consensus 174 ~~~~l~~~~-~~~ai~~~--nd~~a~g~~~al~~~g~~di~vvgfd~~ 218 (272)
T cd06313 174 WETWLTKYP-QLDGAFCH--NDSMALAAYQIMKAAGRTKIVIGGVDGD 218 (272)
T ss_pred HHHHHHhCC-CCCEEEEC--CCcHHHHHHHHHHHcCCCceEEEeecCC
Confidence 334444433 47887775 34466788888887553 5566666543
No 210
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.47 E-value=1.5e+02 Score=25.45 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=35.6
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC--c-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG--G-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~--~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+-++..+...++....++ . ++.-...++.. ...+..++.++++ .+|.+|..+|.+
T Consensus 31 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----v~~~~~~~~~~~g-~id~li~~Ag~~ 98 (265)
T PRK07062 31 AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEAD----VAAFAAAVEARFG-GVDMLVNNAGQG 98 (265)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHH----HHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 5999999877655443333332221111 1 22222334332 2334556666665 799999998853
No 211
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=25.24 E-value=4e+02 Score=22.78 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=36.5
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-++......++. . +-.++.....++..+ .....++.++++ ++|.+|..+|.
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~D~~~~~~~----~~~~~~~~~~~g-~id~li~~ag~ 90 (263)
T PRK06200 29 EGARVAVLERSAEKLASLRQRFG-D-HVLVVEGDVTSYADN----QRAVDQTVDAFG-KLDCFVGNAGI 90 (263)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhC-C-cceEEEccCCCHHHH----HHHHHHHHHhcC-CCCEEEECCCC
Confidence 59999999877665544443331 1 112232233444322 334556767766 79999999874
No 212
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=25.05 E-value=5.4e+02 Score=25.42 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=46.6
Q ss_pred HhcCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhC-CCCCEEEEecChhHHHHHHH
Q 038224 48 DKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTG-GELDAFVAAAGTGGTVAGVS 126 (282)
Q Consensus 48 ~~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~-~~pd~ivvpvG~GG~~aGi~ 126 (282)
+..|-+++.+|.|.+.+.+. ++. + ...++-+. .+ .|++++.+ .+.|.+++.++.--.-.-+.
T Consensus 437 ~~~g~~vvvId~d~~~~~~~-~~~--g-~~~i~GD~-~~------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv 499 (558)
T PRK10669 437 LAAGIPLVVIETSRTRVDEL-RER--G-IRAVLGNA-AN------------EEIMQLAHLDCARWLLLTIPNGYEAGEIV 499 (558)
T ss_pred HHCCCCEEEEECCHHHHHHH-HHC--C-CeEEEcCC-CC------------HHHHHhcCccccCEEEEEcCChHHHHHHH
Confidence 44688899998887654333 222 1 11222222 22 34444444 25789999988765544456
Q ss_pred HHHHhcCCCcEEEEEc
Q 038224 127 RFLQENNPNIKCFLID 142 (282)
Q Consensus 127 ~g~k~~~~~~~iigVe 142 (282)
...++.+|+.++++-.
T Consensus 500 ~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 500 ASAREKRPDIEIIARA 515 (558)
T ss_pred HHHHHHCCCCeEEEEE
Confidence 6677788888888654
No 213
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.01 E-value=2.4e+02 Score=23.77 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=36.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccC-CCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDC-TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~-~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+.++......++.... +-.++.-...++..+ .....++.++++ ++|+||..+|..
T Consensus 30 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~~ 95 (250)
T PRK12939 30 AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASV----QRFFDAAAAALG-GLDGLVNNAGIT 95 (250)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCCC
Confidence 69999999776655443333321111 112333344444333 334455666655 799999999864
No 214
>PRK06197 short chain dehydrogenase; Provisional
Probab=25.00 E-value=1.5e+02 Score=26.31 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=35.7
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccC--CCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDC--TGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~--~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+.+...+...++.... ... ++.-...++.. ......++.++++ ++|++|..+|..
T Consensus 39 ~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~----v~~~~~~~~~~~~-~iD~li~nAg~~ 106 (306)
T PRK06197 39 KGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLAS----VRAAADALRAAYP-RIDLLINNAGVM 106 (306)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHH----HHHHHHHHHhhCC-CCCEEEECCccc
Confidence 49999998777655443333322110 112 22222233322 3445667777665 799999998853
No 215
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.95 E-value=4.4e+02 Score=22.51 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=32.3
Q ss_pred cCCeEEEeCCChhHHH-HHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGA-IQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~-~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-.+.. +...+. . ... ++.-...++.. ...+..++.++++ ++|.+|...|.
T Consensus 31 ~G~~vv~~~~~~~~~~~~~~~~~--~-~~~~~~~~Dl~~~~~----~~~~~~~~~~~~g-~iD~lv~~ag~ 93 (251)
T PRK12481 31 AGADIVGVGVAEAPETQAQVEAL--G-RKFHFITADLIQQKD----IDSIVSQAVEVMG-HIDILINNAGI 93 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHHc--C-CeEEEEEeCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCc
Confidence 5999998865432221 111111 1 112 22222333332 3445566777776 79999998875
No 216
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.90 E-value=75 Score=27.60 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=45.9
Q ss_pred EEEEe--cChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc-hhhhhhccccchhhhhcCccccCCCCccccccCCCCCcHh
Q 038224 111 AFVAA--AGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS-LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQN 187 (282)
Q Consensus 111 ~ivvp--vG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~-~~~~~~~g~~~~~~~~~g~~v~~~~~t~a~gi~~~~~~~~ 187 (282)
+|++= +-||.|+-+-.+.++...|.--+++| |-.++ ....++ +.++.+-+-..|..
T Consensus 127 VIlVDDGiATGatm~aAi~~~r~~~~~~IviAV-PV~p~~a~~~l~--------------------s~~D~vvc~~~P~~ 185 (220)
T COG1926 127 VILVDDGIATGATMKAAVRALRAKGPKEIVIAV-PVAPEDAAAELE--------------------SEADEVVCLYMPAP 185 (220)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCceEEEEc-ccCCHHHHHHHH--------------------hhcCeEEEEcCCcc
Confidence 55654 34888888888899888775544444 44433 444432 12333322112222
Q ss_pred h--HhhcCCeEEEcCHHHHHHHHHHH
Q 038224 188 F--MMAKLDGAFRGTDREAVEMSRFL 211 (282)
Q Consensus 188 ~--~~~~~d~~~~V~d~e~~~a~~~l 211 (282)
+ ...++.++..++|+|..+-.+.-
T Consensus 186 F~AVg~~Y~dF~q~sdeEV~~lL~~a 211 (220)
T COG1926 186 FEAVGEFYRDFRQVSDEEVRALLRRA 211 (220)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHhc
Confidence 2 24456678899999987665543
No 217
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.65 E-value=1.3e+02 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=37.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCC--Cc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCT--GG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~--~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+..+.+.+.+...++....+ .. ++.-...++.. ......++.+..+ ++|.+|..+|..
T Consensus 37 ~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~s----v~~~~~~~~~~~~-~iD~li~nAG~~ 104 (313)
T PRK05854 37 AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLAS----VAALGEQLRAEGR-PIHLLINNAGVM 104 (313)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHH----HHHHHHHHHHhCC-CccEEEECCccc
Confidence 499999998776655444443322111 11 22223344432 2444566666555 799999988753
No 218
>PRK08265 short chain dehydrogenase; Provisional
Probab=24.63 E-value=3.8e+02 Score=23.02 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=36.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+.++..+.+.++. . .-.++.-...++.. ......++.++++ .+|.+|..+|.
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~Dl~~~~~----~~~~~~~~~~~~g-~id~lv~~ag~ 90 (261)
T PRK08265 29 AGARVAIVDIDADNGAAVAASLG-E-RARFIATDITDDAA----IERAVATVVARFG-RVDILVNLACT 90 (261)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhC-C-eeEEEEecCCCHHH----HHHHHHHHHHHhC-CCCEEEECCCC
Confidence 59999999887665555444431 1 11222223333332 2344556666666 79999998875
No 219
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=24.62 E-value=1e+02 Score=29.07 Aligned_cols=15 Identities=40% Similarity=0.372 Sum_probs=12.9
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+++||+|+.+++
T Consensus 142 ~~~~~~GA~Vv~v~~ 156 (385)
T TIGR00263 142 FRMELLGAKVIPVTS 156 (385)
T ss_pred HHHHHcCCEEEEECC
Confidence 369999999999965
No 220
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=24.60 E-value=2e+02 Score=26.70 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=18.8
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHHHH
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARRRA 33 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 33 (282)
++..+|++|..+.|..+..++...+.++..+
T Consensus 175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~ 205 (331)
T PRK02102 175 GGAKLGMDVRICAPKELWPEEELVALAREIA 205 (331)
T ss_pred HHHHcCCEEEEECCcccccCHHHHHHHHHHH
Confidence 4567888888887755544444454444443
No 221
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.33 E-value=3.9e+02 Score=22.44 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=36.4
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|.+|+.+.-+.+.......++..+..-.++.....++..+ .....++.++++ ++|+||..+|.
T Consensus 28 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~~d~vi~~ag~ 91 (251)
T PRK07231 28 EGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADV----EAAVAAALERFG-SVDILVNNAGT 91 (251)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCC
Confidence 59999999887665444333322111112233334444332 334556666665 79999999875
No 222
>PRK06172 short chain dehydrogenase; Provisional
Probab=24.24 E-value=2.5e+02 Score=23.90 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=35.5
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+.-+.++..+...++...... .++.....++..+ ..+..++.++++ ++|.||...|.
T Consensus 30 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i----~~~~~~~~~~~g-~id~li~~ag~ 94 (253)
T PRK06172 30 EGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEV----KALVEQTIAAYG-RLDYAFNNAGI 94 (253)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCC
Confidence 4999999988766544333332111111 2233333444322 334455666665 78999998875
No 223
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.04 E-value=2.3e+02 Score=24.15 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=35.6
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcE-ecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGF-FADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~-~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+.++..+.+.++........ +.-...++..+ .....++.++++ .+|.+|..+|.
T Consensus 24 ~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~lI~~ag~ 88 (252)
T PRK07677 24 EGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDV----QKMVEQIDEKFG-RIDALINNAAG 88 (252)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHH----HHHHHHHHHHhC-CccEEEECCCC
Confidence 699999998776554443333321111222 22223344333 334456777776 78999988874
No 224
>PRK09242 tropinone reductase; Provisional
Probab=23.99 E-value=2.1e+02 Score=24.49 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=36.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccC-C-Cc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDC-T-GG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~-~-~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+..+-++..+...++.... . .. ++.-...++..+ .....++.++++ ++|++|...|.
T Consensus 32 ~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~g-~id~li~~ag~ 98 (257)
T PRK09242 32 LGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDR----RAILDWVEDHWD-GLHILVNNAGG 98 (257)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCC
Confidence 59999999887666555444432210 1 11 222233444332 333456666666 79999999986
No 225
>PRK13018 cell division protein FtsZ; Provisional
Probab=23.71 E-value=6.3e+02 Score=23.92 Aligned_cols=90 Identities=20% Similarity=0.136 Sum_probs=44.5
Q ss_pred hcCCeEEEeCCChhHHHHHhccCcccCCCcEecC--------CCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecC-hh
Q 038224 49 KDGKELEHINGYGSDGAIQSSKFPSDCTGGFFAD--------QFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG-TG 119 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~--------~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG-~G 119 (282)
..|.+.+.++.+... +... .. +.-+.+. -..||..-.........+|.+++. ..|.||+..| +|
T Consensus 52 ~~~v~~iaiNTD~q~-L~~~----~a-~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~I~~~le-~~D~vfI~aGLGG 124 (378)
T PRK13018 52 IEGAETIAINTDAQH-LAMI----KA-DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLK-GADLVFVTAGMGG 124 (378)
T ss_pred CCCceEEEEECCHHH-HhcC----CC-CcEEecCCccCCCCCCCCChHHHHHHHHHHHHHHHHHhc-CCCEEEEEeeccC
Confidence 367889999988732 2221 11 1222331 123443221111122344555554 5788888777 44
Q ss_pred HHHHHHHHH----HHhcCCCcEEEEEcCCC
Q 038224 120 GTVAGVSRF----LQENNPNIKCFLIDPPG 145 (282)
Q Consensus 120 G~~aGi~~g----~k~~~~~~~iigVe~~~ 145 (282)
||=+|++-. ++++...+--+++.|..
T Consensus 125 GTGSGaapvIa~iake~g~ltv~vVt~Pf~ 154 (378)
T PRK13018 125 GTGTGAAPVVAEIAKEQGALVVGVVTKPFK 154 (378)
T ss_pred cchhhHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 566666543 34444434344567754
No 226
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=23.67 E-value=2.5e+02 Score=26.12 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=29.7
Q ss_pred hcCCeEEEeCCChhHH---HHHhccCcccCCCcEecCCCCChHHHH
Q 038224 49 KDGKELEHINGYGSDG---AIQSSKFPSDCTGGFFADQFENLANFR 91 (282)
Q Consensus 49 ~~GA~v~~~~g~~~~a---~~~a~~~~~~~~~~~~~~~~~np~~~~ 91 (282)
.|||+|-.++-++.++ .+...++++..++.+++.+.+....+.
T Consensus 113 r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~ 158 (385)
T KOG2862|consen 113 RYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVL 158 (385)
T ss_pred hhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccccc
Confidence 4899998888777665 344555666667778887777665554
No 227
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.65 E-value=1.8e+02 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=23.2
Q ss_pred CCCEEEEecChhHHHHHHHHHHHhcCC----CcEEEEEcC
Q 038224 108 ELDAFVAAAGTGGTVAGVSRFLQENNP----NIKCFLIDP 143 (282)
Q Consensus 108 ~pd~ivvpvG~GG~~aGi~~g~k~~~~----~~~iigVe~ 143 (282)
.||+|++ ++.....|+..++++.+. ++.|+|.+-
T Consensus 178 ~~~ai~~--~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 178 RPTAVIC--GNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred CCCEEEE--cChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 5888887 356677788888887652 455666653
No 228
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=23.54 E-value=2.6e+02 Score=23.60 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=36.1
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+..+.+...+...++....... ++.....++..+ .....++.++++ ++|.+|...|.
T Consensus 26 ~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~~~~~~-~~d~vi~~ag~ 90 (250)
T TIGR03206 26 EGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSV----DTAVAAAEQALG-PVDVLVNNAGW 90 (250)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCC
Confidence 59999999887766544333221111112 222233344333 233556767766 78999999874
No 229
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.28 E-value=4.3e+02 Score=23.27 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcC----CCcEEEEEcCC
Q 038224 97 TGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENN----PNIKCFLIDPP 144 (282)
Q Consensus 97 ~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~----~~~~iigVe~~ 144 (282)
...+++++.+ ++|+|++. +..+..|+..++++.+ .+..|+|.+-.
T Consensus 192 ~~~~~l~~~~-~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~ 240 (305)
T cd06324 192 QAENLLKRYP-DVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWS 240 (305)
T ss_pred HHHHHHHHCC-CccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCC
Confidence 3455555544 68988864 5567789999999865 24667776643
No 230
>PRK06932 glycerate dehydrogenase; Provisional
Probab=23.26 E-value=1.2e+02 Score=27.74 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=42.5
Q ss_pred HhcCCeEEEeCCChhHHHH----HhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhHHH-
Q 038224 48 DKDGKELEHINGYGSDGAI----QSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTV- 122 (282)
Q Consensus 48 ~~~GA~v~~~~g~~~~a~~----~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG~~- 122 (282)
+.+|.+|+.++-...+... .-.++.++ ..++.++- |.+... +.-+..|.+++|+ +.++++-+|-|+.+
T Consensus 167 ~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~-sDiv~l~~---Plt~~T-~~li~~~~l~~mk--~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 167 QALGMKVLYAEHKGASVCREGYTPFEEVLKQ-ADIVTLHC---PLTETT-QNLINAETLALMK--PTAFLINTGRGPLVD 239 (314)
T ss_pred hcCCCEEEEECCCcccccccccCCHHHHHHh-CCEEEEcC---CCChHH-hcccCHHHHHhCC--CCeEEEECCCccccC
Confidence 4689998877643211000 00111111 23444432 333334 4566788888885 78999999988864
Q ss_pred -HHHHHHHHh
Q 038224 123 -AGVSRFLQE 131 (282)
Q Consensus 123 -aGi~~g~k~ 131 (282)
..+..++++
T Consensus 240 e~AL~~aL~~ 249 (314)
T PRK06932 240 EQALLDALEN 249 (314)
T ss_pred HHHHHHHHHc
Confidence 445555553
No 231
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=23.12 E-value=2.6e+02 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=17.3
Q ss_pred cHHHHHHHHhCCCCCEEEEecChh
Q 038224 96 GTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 96 t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
....++.++++ ++|++|..+|..
T Consensus 70 ~~~~~~~~~~~-~id~li~~ag~~ 92 (246)
T PRK12938 70 AAFDKVKAEVG-EIDVLVNNAGIT 92 (246)
T ss_pred HHHHHHHHHhC-CCCEEEECCCCC
Confidence 34567777776 799999999863
No 232
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.04 E-value=2.7e+02 Score=23.38 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=33.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.+.......++....... ++.....++..+ .....++.++.+ .+|.||..+|.
T Consensus 28 ~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~ 92 (253)
T PRK08217 28 KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDV----EATFAQIAEDFG-QLNGLINNAGI 92 (253)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCc
Confidence 48999999887654433333221111111 122222333322 333445555554 78999998874
No 233
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=22.99 E-value=1.3e+02 Score=27.60 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.9
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+++||+|+.+++
T Consensus 116 ~~~~~~GA~v~~v~~ 130 (337)
T TIGR01274 116 QLSRIMGADVRLDPD 130 (337)
T ss_pred HHHHHcCCEEEEeCC
Confidence 478999999998875
No 234
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=22.96 E-value=1.3e+02 Score=26.60 Aligned_cols=30 Identities=30% Similarity=0.227 Sum_probs=21.3
Q ss_pred hHHHhcCCEEEEecCCCCCChhhHHHHHHHHHHH
Q 038224 2 QILEALGATVERVRPVSITHRDHFVNVARRRALE 35 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 35 (282)
++|+.+||+|+.+.+ ..+.....+.+++++
T Consensus 96 ~~~~~~Ga~v~~~~~----~~~~~~~~~~~~~~~ 125 (306)
T PF00291_consen 96 KQMRALGAEVILVPG----DVEGAFDDAQELAKE 125 (306)
T ss_dssp HHHHHTTCEEEEESS----THHHHHHHHHHHHHH
T ss_pred cceeeecceEEEccc----ccccccccccccccc
Confidence 578999999998865 334556666666655
No 235
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=22.95 E-value=2.3e+02 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHH
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVA 29 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~ 29 (282)
++..+|++|+++.|..+..++...+.+
T Consensus 175 ~~~~~g~~v~~~~P~~~~~~~~~~~~~ 201 (332)
T PRK04284 175 GAAIMGMDFHLVCPKELNPDDELLNKC 201 (332)
T ss_pred HHHHcCCEEEEECCccccCCHHHHHHH
Confidence 456778888888775443344444433
No 236
>PRK06057 short chain dehydrogenase; Provisional
Probab=22.84 E-value=4.7e+02 Score=22.20 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=34.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++-+-+.......++. ..++.....++.. ......++.++.+ ++|.+|..+|.
T Consensus 30 ~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~----~~~~~~~~~~~~~-~id~vi~~ag~ 89 (255)
T PRK06057 30 EGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDA----VNALFDTAAETYG-SVDIAFNNAGI 89 (255)
T ss_pred cCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCc
Confidence 59999999776554433333321 1233333344432 2334456666665 79999998875
No 237
>PRK05876 short chain dehydrogenase; Provisional
Probab=22.79 E-value=2.6e+02 Score=24.47 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=36.7
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|++++.+.++..+...++...... .++.-...++..+ .....++.++++ ++|.+|..+|.
T Consensus 29 ~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v----~~~~~~~~~~~g-~id~li~nAg~ 93 (275)
T PRK05876 29 RGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEV----THLADEAFRLLG-HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCc
Confidence 5999999987765554443333211111 1222333444332 344557777776 79999998885
No 238
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=22.69 E-value=2.2e+02 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=11.1
Q ss_pred hcCCC-CEEEEEecCCCcchh
Q 038224 236 SLGPG-HTIVTILCDSGMRHL 255 (282)
Q Consensus 236 ~~~~~-~~Vv~v~tGgg~ky~ 255 (282)
+++.+ .+-|+|+||+|++=-
T Consensus 43 ~~~~~~~~~v~vlcG~GnNGG 63 (203)
T COG0062 43 EYPLGRARRVLVLCGPGNNGG 63 (203)
T ss_pred HcCcccCCEEEEEECCCCccH
Confidence 34433 456666777776533
No 239
>PRK05866 short chain dehydrogenase; Provisional
Probab=22.57 E-value=2.4e+02 Score=25.09 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=36.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+-+...+...++...... .++.-...++..+ .....++.++++ .+|.+|.++|.+
T Consensus 63 ~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v----~~~~~~~~~~~g-~id~li~~AG~~ 128 (293)
T PRK05866 63 RGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAV----DALVADVEKRIG-GVDILINNAGRS 128 (293)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCCC
Confidence 5999999988765544333332111011 1222223344322 334456666665 799999998865
No 240
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=22.42 E-value=1.3e+02 Score=27.54 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.6
Q ss_pred HHHhcCCEEEEecC
Q 038224 3 ILEALGATVERVRP 16 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~ 16 (282)
+|++|||+|+++++
T Consensus 118 ~~~~~GA~v~~v~~ 131 (337)
T PRK12390 118 LSRIMGADVRLVPD 131 (337)
T ss_pred HHHHCCCEEEEeCC
Confidence 68999999999976
No 241
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=22.39 E-value=2.6e+02 Score=24.19 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=35.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.+.......++....... ++.-...++..+ .....++.++++ ++|.+|..+|.
T Consensus 33 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v----~~~~~~~~~~~g-~id~li~~ag~ 97 (278)
T PRK08277 33 AGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESL----EQARQQILEDFG-PCDILINGAGG 97 (278)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCC
Confidence 59999999877655544444332111111 222223343322 333455666665 79999999874
No 242
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=22.30 E-value=1.2e+02 Score=27.87 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcCh---------------hHHhhCCCCCC
Q 038224 226 NCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDV---------------HYLSQQGLTPA 272 (282)
Q Consensus 226 alaal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~---------------~w~~~~~~~~~ 272 (282)
|.-+++|..++ |+..++.+++|....+-+.|+.++ .||.++++.+.
T Consensus 129 AaNaLLKtLEE-Pp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~ 189 (319)
T PRK08769 129 ACNALLKTLEE-PSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQGVSER 189 (319)
T ss_pred HHHHHHHHhhC-CCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcCCChH
Confidence 33467777776 456677777787777878775552 69988876543
No 243
>PRK06194 hypothetical protein; Provisional
Probab=22.30 E-value=2.7e+02 Score=24.18 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=35.5
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcE-ecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGF-FADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~-~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+.+...+...++........ +.....++.. ...+..++.++++ .+|.||..+|..
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~----~~~~~~~~~~~~g-~id~vi~~Ag~~ 94 (287)
T PRK06194 29 LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQ----VEALADAALERFG-AVHLLFNNAGVG 94 (287)
T ss_pred CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCCC
Confidence 499999998765443333333221111222 2223344432 2334556666665 789999999864
No 244
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=22.28 E-value=2.7e+02 Score=23.68 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=35.7
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+-+...+...++....... ++.-...++..+ .....++.++++ ++|.+|..+|..
T Consensus 34 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~~ 99 (256)
T PRK06124 34 AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAV----AAAFARIDAEHG-RLDILVNNVGAR 99 (256)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHH----HHHHHHHHHhcC-CCCEEEECCCCC
Confidence 59999999877554433333331111112 222233444322 333456666666 789999998863
No 245
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.13 E-value=2.1e+02 Score=23.37 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=30.3
Q ss_pred hhcHHHHHHHHhCCCCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCC
Q 038224 94 YEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPG 145 (282)
Q Consensus 94 ~~t~a~EI~eQl~~~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~ 145 (282)
|...+.|+.+.+. +-.+.++.-|..|+...+.++..+.+ .+++||-|..
T Consensus 16 ~~~~A~~lg~~La-~~g~~lv~Gg~~GlM~a~a~ga~~~g--g~viGVlp~~ 64 (159)
T TIGR00725 16 LYEIAYRLGKELA-KKGHILINGGRTGVMEAVSKGAREAG--GLVVGILPDE 64 (159)
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCchhHHHHHHHHHHHCC--CeEEEECChh
Confidence 3444555555554 22456666566677777777877654 4789997753
No 246
>PRK07074 short chain dehydrogenase; Provisional
Probab=22.11 E-value=4.9e+02 Score=22.06 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=38.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+-+.....+.++. +..-.++.....++.. ......++.++++ .+|.||...|..
T Consensus 25 ~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~~d~vi~~ag~~ 88 (257)
T PRK07074 25 AGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAAS----LAAALANAAAERG-PVDVLVANAGAA 88 (257)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCCC
Confidence 59999999877665554444442 1111233333444432 2334557777776 699999999864
No 247
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.90 E-value=5.2e+02 Score=22.24 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=33.3
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcE-ecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGF-FADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~-~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.++.+.++..+...++........ +.-...++..+ .....++.++++ .+|.+|...|.
T Consensus 32 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i----~~~~~~~~~~~~-~iD~vi~~ag~ 96 (264)
T PRK07576 32 AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAV----EAAFAQIADEFG-PIDVLVSGAAG 96 (264)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCC
Confidence 599999998765544333322221111111 21223333222 333445666665 68999988764
No 248
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=21.85 E-value=3e+02 Score=23.09 Aligned_cols=66 Identities=23% Similarity=0.189 Sum_probs=36.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChhH
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~GG 120 (282)
.|++|+.+.-+.+.......++....... ++.....++..+ .....++..+++ ++|.||..+|...
T Consensus 29 ~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~----~~~~~~~~~~~~-~~d~vi~~ag~~~ 95 (251)
T PRK12826 29 DGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAAL----KAAVAAGVEDFG-RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCCCC
Confidence 58999999877654443333332211112 222233444332 334456666766 7999999987643
No 249
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.78 E-value=2e+02 Score=24.28 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=20.5
Q ss_pred CCCEEEEecChhHHHHHHHHHHHhcCC----CcEEEEEc
Q 038224 108 ELDAFVAAAGTGGTVAGVSRFLQENNP----NIKCFLID 142 (282)
Q Consensus 108 ~pd~ivvpvG~GG~~aGi~~g~k~~~~----~~~iigVe 142 (282)
.||+|+++ +..+..|+.+++++.+. ++.++|++
T Consensus 176 ~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~d 212 (267)
T cd06284 176 RPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGFD 212 (267)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEeC
Confidence 47888776 44456678888877652 34455543
No 250
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=21.73 E-value=2.3e+02 Score=20.84 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHhCCCC--CEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCCCC
Q 038224 101 IWEQTGGEL--DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGS 146 (282)
Q Consensus 101 I~eQl~~~p--d~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~ 146 (282)
+++++...+ ..+-+.+|+|.. ...+....|..++++++.+..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~----~~~l~~~~~~~~v~~vD~s~~ 54 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSI----TIEAARLVPNGRVYAIERNPE 54 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHH----HHHHHHHCCCceEEEEcCCHH
Confidence 445554222 344555555544 334444556789999998754
No 251
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=21.67 E-value=3e+02 Score=23.21 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=32.7
Q ss_pred cCCeEEEeCCChhHHHHHh-ccCcccCCCcEec-CCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecCh
Q 038224 50 DGKELEHINGYGSDGAIQS-SKFPSDCTGGFFA-DQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGT 118 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a-~~~~~~~~~~~~~-~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~ 118 (282)
.|++|+.+..+-.+..+.. .++........++ -...++.. ......++.++++ ++|+||..+|.
T Consensus 29 ~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~id~vi~~ag~ 94 (247)
T PRK12935 29 EGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVED----ANRLVEEAVNHFG-KVDILVNNAGI 94 (247)
T ss_pred cCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCC
Confidence 5999987665443433222 2221111112222 22333322 2334556666666 79999999876
No 252
>PRK07326 short chain dehydrogenase; Provisional
Probab=21.63 E-value=4.7e+02 Score=21.76 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=35.0
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+-+...+...++.....-.++.....++.. ......++.++++ .+|.||.+.|.+
T Consensus 29 ~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~~d~vi~~ag~~ 93 (237)
T PRK07326 29 EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEAD----VQRAVDAIVAAFG-GLDVLIANAGVG 93 (237)
T ss_pred CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHH----HHHHHHHHHHHcC-CCCEEEECCCCC
Confidence 5899999876554433333333211111222223344332 2344556766665 789999988753
No 253
>PRK07454 short chain dehydrogenase; Provisional
Probab=21.55 E-value=3e+02 Score=23.10 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=35.8
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+.-+.++..+...+........ ++.....++..+ .....++.+.++ ++|.+|.++|..
T Consensus 29 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~lv~~ag~~ 94 (241)
T PRK07454 29 AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAI----APGIAELLEQFG-CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCcc
Confidence 58999999877665544333321111122 222223344332 223446666665 799999998753
No 254
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=21.46 E-value=1.3e+02 Score=27.15 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred hHHHhcCCEEEEecC
Q 038224 2 QILEALGATVERVRP 16 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~ 16 (282)
++|+++||+|+.+++
T Consensus 102 ~~~~~~Ga~v~~~~~ 116 (307)
T cd06449 102 LLSRIMGADVRLVSA 116 (307)
T ss_pred HHHHHCCCEEEEECC
Confidence 468999999999976
No 255
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.36 E-value=1.2e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.3
Q ss_pred EEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCC
Q 038224 111 AFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPP 144 (282)
Q Consensus 111 ~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~ 144 (282)
+|+.+.|.|-|.+.++.+++......++.-||=.
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFl 39 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHGYRVGVVQFL 39 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 6888999999999999999998778888887753
No 256
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=21.24 E-value=2e+02 Score=24.24 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCcEecCCCC-ChHHHHhhhhcHHHHHHHHhCC-CCCEEEEecChhHHHHHHHHHHHhcCCCcEEEEEcCC
Q 038224 76 TGGFFADQFE-NLANFRAHYEGTGPEIWEQTGG-ELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPP 144 (282)
Q Consensus 76 ~~~~~~~~~~-np~~~~gh~~t~a~EI~eQl~~-~pd~ivvpvG~GG~~aGi~~g~k~~~~~~~iigVe~~ 144 (282)
.++.|++.|- ++.++.. ...++..+++++.. ++|.|+.+ -++|..-|...+.+.- ..++-+...
T Consensus 17 ~~~~~~~~~~~~~~~P~~-l~~i~~~la~~~~~~~~D~Ivg~-e~~GiplA~~lA~~Lg---~p~v~vRK~ 82 (189)
T PRK09219 17 GNILKVDSFLNHQVDPKL-MNEIGKEFARRFKDEGITKILTI-EASGIAPAVMAALALG---VPVVFAKKK 82 (189)
T ss_pred CCEEEEhhhhccccCHHH-HHHHHHHHHHHhccCCCCEEEEE-ccccHHHHHHHHHHHC---CCEEEEEEC
Confidence 4677776653 2334444 56778888888764 58887665 4566666666655432 235555543
No 257
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=21.12 E-value=1.4e+02 Score=27.24 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=31.3
Q ss_pred hHHHhcCCEEEEecCCCC----CChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeC
Q 038224 2 QILEALGATVERVRPVSI----THRDHFVNVARRRALEANELASKRRRAVDKDGKELEHIN 58 (282)
Q Consensus 2 ~~~~~~Ga~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~ 58 (282)
.++|++||+.+..+.... .+......++.+ +...|++-|+.-||+.+.++
T Consensus 176 el~ealGA~~v~~~~~~~cCG~~~~~~~~~~sl~-------~~~~kL~~~ke~gad~ivt~ 229 (293)
T COG2048 176 ELVEALGAEPVDYEDKTQCCGAPHSSLNLSVSLK-------LAKRKLQSAKEAGADCIVTP 229 (293)
T ss_pred HHHHHhCCCCCCcCCcccccCcchhcccHHHHHH-------HHHHHHHHHHhcCCCEEEec
Confidence 368999999987765211 122333333333 34457788888899888874
No 258
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=21.01 E-value=93 Score=22.63 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=20.7
Q ss_pred EecChhHHHHHHHHHHHhcCCCcEEEEEcCCCCc
Q 038224 114 AAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSS 147 (282)
Q Consensus 114 vpvG~GG~~aGi~~g~k~~~~~~~iigVe~~~~~ 147 (282)
+++|+|..+..+...+ ...|..+++||+.+...
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~ 36 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISPEM 36 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-HHH
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCHHH
Confidence 4678888888877776 44566899999987543
No 259
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=20.99 E-value=1e+02 Score=29.41 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCCEEEEecChhHHHHHHH---HHHHhcCCCcEEEEEcC
Q 038224 98 GPEIWEQTGGELDAFVAAAGTGGTVAGVS---RFLQENNPNIKCFLIDP 143 (282)
Q Consensus 98 a~EI~eQl~~~pd~ivvpvG~GG~~aGi~---~g~k~~~~~~~iigVe~ 143 (282)
|.|++.+|-..-|+||...--| .+.-+. ..+++.+| +||-+..
T Consensus 79 Gr~~l~~Lv~~ADVvien~rpg-~~~rlGl~~e~L~~~nP--~LI~~si 124 (416)
T PRK05398 79 GKEVLEKLIREADVLVENFGPG-ALDRMGFTWERIQEINP--RLIVASI 124 (416)
T ss_pred HHHHHHHHHhcCCEEEECCCcc-hHHHcCCCHHHHHhhCc--CEEEEEE
Confidence 6788888766679999876554 444443 34455666 5555544
No 260
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.97 E-value=4.9e+02 Score=21.65 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=34.7
Q ss_pred cCCeEEEe-CCChhHHHHHhccCcccCCC-cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHI-NGYGSDGAIQSSKFPSDCTG-GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~-~g~~~~a~~~a~~~~~~~~~-~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.+ .-+.+.......++...... .++.....++..+ .....++.++++ .+|.||...|..
T Consensus 28 ~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~vi~~ag~~ 94 (247)
T PRK05565 28 EGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDV----ENLVEQIVEKFG-KIDILVNNAGIS 94 (247)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH----HHHHHHHHHHhC-CCCEEEECCCcC
Confidence 58999988 65544333222222111111 2233334454432 333456667766 699999988764
No 261
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.95 E-value=1.9e+02 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=34.9
Q ss_pred cCCeEEEeCCChhHHHHHhccCcccCCC--cEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSDCTG--GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~~~~--~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++-+-+...+.+.++...... .++.....++..+ .....++.++++ ++|++|...|.+
T Consensus 23 ~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~~~~-~id~lv~~ag~~ 89 (272)
T PRK07832 23 QGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAV----AAFAADIHAAHG-SMDVVMNIAGIS 89 (272)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHH----HHHHHHHHHhcC-CCCEEEECCCCC
Confidence 5999999876544332222222111011 1222333444322 334557777765 799999999864
No 262
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=20.72 E-value=3e+02 Score=24.93 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhcCCeEEEeCCChh-HHHHHhccCcccCCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEE--EEe
Q 038224 39 LASKRRRAVDKDGKELEHINGYGS-DGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAF--VAA 115 (282)
Q Consensus 39 ~~~~~~~~~~~~GA~v~~~~g~~~-~a~~~a~~~~~~~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~i--vvp 115 (282)
.+.+-.+.++.+|-++..+.-... +|.+.|++.+.+....++.-+.| | |..|+..-+.+..+.. ++|
T Consensus 21 ~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD------G----Tv~evingl~~~~~~~LgilP 90 (301)
T COG1597 21 LLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD------G----TVNEVANGLAGTDDPPLGILP 90 (301)
T ss_pred HHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc------c----hHHHHHHHHhcCCCCceEEec
Q ss_pred cChhHHHH
Q 038224 116 AGTGGTVA 123 (282)
Q Consensus 116 vG~GG~~a 123 (282)
.||+-.++
T Consensus 91 ~GT~NdfA 98 (301)
T COG1597 91 GGTANDFA 98 (301)
T ss_pred CCchHHHH
No 263
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=20.48 E-value=2.7e+02 Score=25.37 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHHHHHHHhHHHHHhHHHHHhcCCeEEEeCC
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHING 59 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~~~g 59 (282)
++..+|++|.++.|.....++...+.++..++ .+|+++..++.
T Consensus 166 ~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~--------------~~g~~~~~~~d 208 (302)
T PRK14805 166 GAAILGATMTVICPPGHFPDGQIVAEAQELAA--------------KSGGKLVLTSD 208 (302)
T ss_pred HHHHcCCEEEEECCchhcCCHHHHHHHHHHHH--------------HcCCEEEEEcC
Confidence 45678999999987554334444444433333 36888777664
No 264
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=20.47 E-value=2.5e+02 Score=28.43 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCEEEEecChhHHHHH--HHHHHHhcCCCcEEEEE
Q 038224 97 TGPEIWEQTGGELDAFVAAAGTGGTVAG--VSRFLQENNPNIKCFLI 141 (282)
Q Consensus 97 ~a~EI~eQl~~~pd~ivvpvG~GG~~aG--i~~g~k~~~~~~~iigV 141 (282)
-+.|.+++++ +|++|+--|.|++-.. ++.+|++.+.+++||||
T Consensus 164 ~i~e~l~~l~--Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 164 AALAACEALK--LDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred HHHHHHHHcC--CCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 3567777775 8999998777775433 45677777667899998
No 265
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.46 E-value=2.8e+02 Score=23.52 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=34.1
Q ss_pred cCCeEEEeCCChhHHHHHhccCccc-CCCc-EecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSD-CTGG-FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~-~~~~-~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+..+..+...+..+. .... ++.-...++.. ......++.++++ .+|.||...|..
T Consensus 25 ~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~~~~~~~~~~~-~id~vi~~ag~~ 91 (256)
T PRK12745 25 AGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSA----HEAMLDAAQAAWG-RIDCLVNNAGVG 91 (256)
T ss_pred CCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHH----HHHHHHHHHHhcC-CCCEEEECCccC
Confidence 5999999976544332222111111 1122 22233344432 2334556666665 799999998753
No 266
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=20.38 E-value=1.9e+02 Score=27.49 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=7.1
Q ss_pred HHHhcCCEEEEecC
Q 038224 3 ILEALGATVERVRP 16 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~ 16 (282)
+|--+||+|+.|++
T Consensus 32 lLAdlGAeVIKVE~ 45 (405)
T PRK03525 32 MFAEWGAEVIWIEN 45 (405)
T ss_pred HHHHcCCcEEEECC
Confidence 34445555555543
No 267
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=20.31 E-value=2.8e+02 Score=23.41 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCCCEEEEecChh
Q 038224 97 TGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 97 ~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
...++.++++ ++|.+|..+|.+
T Consensus 70 ~~~~~~~~~~-~id~li~~ag~~ 91 (248)
T PRK06947 70 MFDAVQSAFG-RLDALVNNAGIV 91 (248)
T ss_pred HHHHHHHhcC-CCCEEEECCccC
Confidence 3445666665 799999998853
No 268
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=20.30 E-value=2.2e+02 Score=24.29 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=36.2
Q ss_pred cCCeEEEeCCChhHHHHHhccCccc---CCCcEecCCCCChHHHHhhhhcHHHHHHHHhCCCCCEEEEecChh
Q 038224 50 DGKELEHINGYGSDGAIQSSKFPSD---CTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119 (282)
Q Consensus 50 ~GA~v~~~~g~~~~a~~~a~~~~~~---~~~~~~~~~~~np~~~~gh~~t~a~EI~eQl~~~pd~ivvpvG~G 119 (282)
.|++|+.++.+.......+.++... ..-.++.....++..+ .....++.++++ .+|.+|..+|.+
T Consensus 25 ~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i----~~~~~~~~~~~~-~id~vv~~ag~~ 92 (259)
T PRK12384 25 EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSV----LALSRGVDEIFG-RVDLLVYNAGIA 92 (259)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHH----HHHHHHHHHHcC-CCCEEEECCCcC
Confidence 4999999987765443333332111 0112222233444322 334567777776 799999998753
No 269
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=20.07 E-value=1.6e+02 Score=27.16 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCcchhhhhcCh---------------hHHhhCCCC
Q 038224 227 CVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYDV---------------HYLSQQGLT 270 (282)
Q Consensus 227 laal~~l~~~~~~~~~Vv~v~tGgg~ky~~~~~~~---------------~w~~~~~~~ 270 (282)
-=+++|..++ |+..++.+++|....+-++|+.++ +||.++++.
T Consensus 125 aNaLLKtLEE-Pp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~ 182 (319)
T PRK06090 125 SNALLKTLEE-PAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT 182 (319)
T ss_pred HHHHHHHhcC-CCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc
Confidence 3367777776 566677777788778888886652 799988765
No 270
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=20.07 E-value=2.8e+02 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=16.5
Q ss_pred HHHhcCCEEEEecCCCCCChhhHHHHHHH
Q 038224 3 ILEALGATVERVRPVSITHRDHFVNVARR 31 (282)
Q Consensus 3 ~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~ 31 (282)
++..+|++|+++.|..+.-+....+.++.
T Consensus 196 ~~~~~G~~v~~~~P~~~~~~~~~~~~a~~ 224 (357)
T TIGR03316 196 LMTRFGMDVTLAHPEGYHLLPEVIEVAKK 224 (357)
T ss_pred HHHHcCCEEEEECCCcccCCHHHHHHHHH
Confidence 34667888888877544334444444433
Done!