RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 038224
(282 letters)
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 192 bits (489), Expect = 1e-58
Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
DQ+ N +N AHY+ T EI +Q G+LD VA+ GTGGT+ G++R L+E P
Sbjct: 238 NSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGC 297
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
+ +DP GS L + E + EGIG + + +D
Sbjct: 298 RIIGVDPEGSILAEPEELN------QTEQTTYE------VEGIGYDFIPTVLDRTVVDKW 345
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLS 256
F+ D EA +R L+ +GL G S+ AV+ AQ L G V IL DS +++
Sbjct: 346 FKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMT 405
Query: 257 KFYDVHYLSQQGLTP 271
KF ++ Q+G
Sbjct: 406 KFLSDRWMLQKGFLK 420
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 191 bits (488), Expect = 1e-57
Identities = 63/268 (23%), Positives = 101/268 (37%), Gaps = 52/268 (19%)
Query: 3 ILEALGATVERVR-PVSITHRDHFVNVARRRALEANELASKRRRAVDKDGKELEHINGYG 61
L LGA + R + + + VA++ L +E
Sbjct: 154 ALRTLGAKIIRTPTEAAYDSPEGLIYVAQQ-------LQ-----------RETP------ 189
Query: 62 SDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGT 121
DQ+ N N AHY+GT EI Q ++D V +AGT GT
Sbjct: 190 ---------------NSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGT 234
Query: 122 VAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGI 181
++G+ R ++E P+ + +DP GS L + + + + EGIG
Sbjct: 235 ISGIGRKIKEQVPSCQIVGVDPYGSILARPAELN------KTDVQFYE------VEGIGY 282
Query: 182 NRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGH 241
+ F +D + D + MSR L +GL G SS A+ A+ L G
Sbjct: 283 DFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQ 342
Query: 242 TIVTILCDSGMRHLSKFYDVHYLSQQGL 269
V IL D +++KF +++ +
Sbjct: 343 RCVVILPDGIRNYMTKFVSDNWMEARNF 370
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 157 bits (400), Expect = 9e-47
Identities = 62/196 (31%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
G +GA + ++ G DQF N N AHY TGPEIW+QTGG + FV++ GT G
Sbjct: 118 GMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTG 177
Query: 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
T+ GVSRF++E + + + P S +
Sbjct: 178 TITGVSRFMREQSKPVTIVGLQPEEGSSIPGI------------------------RRWP 213
Query: 181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG 240
L F + +D R+A R L +G+F G SS GA+RVA + P
Sbjct: 214 TEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAA-NPD 272
Query: 241 HTIVTILCDSGMRHLS 256
+V I+CD G R+LS
Sbjct: 273 AVVVAIICDRGDRYLS 288
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 152 bits (386), Expect = 1e-44
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
A + + + G F DQF+N AN RAHYE TGPE++E G +DAFV +GTGG
Sbjct: 119 RMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGG 178
Query: 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
T+ GV R+L+E P++K ++P S++ + G +G+G
Sbjct: 179 TITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMG---------------Q-HGF-QGMG 221
Query: 181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG 240
+ +N ++ LDG + + +A ++R L + +GLFLG SS A++VA+ LGPG
Sbjct: 222 PGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGPG 281
Query: 241 HTIVTILCDSGMRHLS 256
+ I D G ++LS
Sbjct: 282 KRVACISPDGGWKYLS 297
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 149 bits (380), Expect = 1e-43
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
Query: 61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
G GAI ++ G F QF+N AN H TG EI EQ G +LDAFVA GTGG
Sbjct: 122 GMRGAIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 121 TVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG 180
T+ G + L+E PNIK + ++P S + + G+ + +GIG
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLS-------------GGKPGPHKI----QGIG 224
Query: 181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPG 240
+ + DG T EA +R + +G+ G SS A++VA+ LG G
Sbjct: 225 AGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKELGKG 284
Query: 241 HTIVTILCDSGMRHLS 256
++ I+ +G R+LS
Sbjct: 285 KKVLAIIPSNGERYLS 300
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 150 bits (381), Expect = 3e-43
Identities = 44/204 (21%), Positives = 71/204 (34%), Gaps = 37/204 (18%)
Query: 61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGG---ELDAFVAAAG 117
+ + S G +QF N ANF AH GT EI+ Q+ L + G
Sbjct: 202 STVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLG 261
Query: 118 TGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITE 177
T G ++ + +LQ +P+I+ L+ P
Sbjct: 262 TSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIP--------------------------- 294
Query: 178 GIGINRLTQNF----MMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRV 233
GI R+ M+ T EA+E + ++DGL +G S +
Sbjct: 295 --GIRRVETGMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKK 352
Query: 234 AQSLG-PGHTIVTILCDSGMRHLS 256
A V ++ D+G ++LS
Sbjct: 353 AAEGDLEPGDYVVVVPDTGFKYLS 376
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 145 bits (369), Expect = 5e-42
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 29/200 (14%)
Query: 61 GSDGAIQSSK-FPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTG 119
GS+ A+ ++K + Q+ N AN +HY GTGPE+ E+ FVA GT
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
GT+ G RFL+E+ N+K +P + +
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYGEGVYAL------------------------RNM 224
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-- 237
+ + + L + +AV +R LV +G+F G S+ A+ V
Sbjct: 225 DEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALA 284
Query: 238 -GPGHTIVTILCDSGMRHLS 256
G I ++ D+G ++LS
Sbjct: 285 AGERADIALVVADAGWKYLS 304
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 143 bits (362), Expect = 4e-41
Identities = 68/197 (34%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 61 GSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGG 120
G GA++ + S TG +QFEN N +H TGPEI +Q ++DAFVA GTGG
Sbjct: 122 GMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 121 TVAGVSRFLQE-NNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
T++GV R L+ +K ++P S + + G I +GI
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPG---------------K-HAI-QGI 224
Query: 180 GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGP 239
G + + + +D D EA EM+R+L K +GL +G SS N A++VAQ LGP
Sbjct: 225 GAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGP 284
Query: 240 GHTIVTILCDSGMRHLS 256
+VT+ D R+LS
Sbjct: 285 DARVVTVAPDHAERYLS 301
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 142 bits (360), Expect = 9e-41
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
F QFEN AN H T E+W T G++D VA GTGGT+ GV++ ++E P+
Sbjct: 141 RYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSA 200
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
+ ++P S + + +G P I +GIG + +D
Sbjct: 201 RFVAVEPAASPVLSGGQKG---------------PH-PI-QGIGAGFVPPVLDQDLVDEI 243
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHL 255
+ +A+ ++R L + +GL +G SS V A++VA+ G IV +L D G R+L
Sbjct: 244 ITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYL 303
Query: 256 S 256
S
Sbjct: 304 S 304
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 142 bits (360), Expect = 2e-40
Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
ADQF N H E TGPEIWEQT +D F+A GTGGT+ GV+R L++ +
Sbjct: 146 NAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHA 205
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
+ ++P S + + G P I +GIG + + +D
Sbjct: 206 RIVAVEPTESPVLSGGKPG---------------PH-KI-QGIGPGFVPDVLDRSLIDEV 248
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHL 255
+A+E + L ++DG+F G S N A+++A+ G TIVT++ G R+L
Sbjct: 249 LCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYL 308
Query: 256 S 256
S
Sbjct: 309 S 309
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 141 bits (358), Expect = 2e-40
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
G+ QFEN AN + HYE TGPEIW+ TGG++D FV+ GTGGT+ G ++L+E N N+
Sbjct: 141 NGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANV 200
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
K + ++P S++ + G P I +GIG + + +D
Sbjct: 201 KLYGVEPVESAILSGGKPG---------------PH-KI-QGIGAGFIPSVLNVDLIDEV 243
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHL 255
+ + E+++M+R L +GL +G SS A+++AQ G V I G R+L
Sbjct: 244 VQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYL 303
Query: 256 S 256
S
Sbjct: 304 S 304
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 139 bits (352), Expect = 2e-39
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 79 FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFL-QENNPNIK 137
QFEN AN + H E TGPEIW+ T G++D VA GTGG++ G+SR + + I
Sbjct: 139 VMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQIT 198
Query: 138 CFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAF 197
++P S + + + P +GIG + +N ++ +D
Sbjct: 199 SVAVEPVESPVIS-----------QTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVE 247
Query: 198 RGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLG-PGHTIVTILCDSGMRHLS 256
A+ +R L+ +G+ G SS A R+A+ IV IL + R+LS
Sbjct: 248 TVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLS 307
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 140 bits (354), Expect = 6e-39
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
+ QF+N AN + HYE TGPEIW+ T G++D FVA GTGGT+ GV RF++E NP
Sbjct: 249 DAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKT 308
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
+ ++P S + + G P I +GIG + +N +D
Sbjct: 309 QVIGVEPTESDILSGGKPG---------------PH-KI-QGIGAGFIPKNLDQKIMDEV 351
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHL 255
+ EA+E ++ L +GL +G SS A++VA+ G I + G R+L
Sbjct: 352 IAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYL 411
Query: 256 S 256
S
Sbjct: 412 S 412
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 135 bits (343), Expect = 5e-38
Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 77 GGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNI 136
F A+QF N N AH+ T EIWE T GE+D V+A GT GTV GV+ L+E I
Sbjct: 153 KYFVANQFGNPDNTAAHHY-TANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGI 211
Query: 137 KCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGA 196
K ++P S++ +G P I +GIG + + +D
Sbjct: 212 KIIAVEPEESAVLEGKAKG---------------P-HGI-QGIGAGFIPDIYKKEFVDEI 254
Query: 197 FRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ-SLGPGHTIVTILCDSGMRHL 255
++A +M+R +VK DG+ G SS + ++ A+ G TIV I+ G R+L
Sbjct: 255 IPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPSCGERYL 314
Query: 256 S 256
S
Sbjct: 315 S 315
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 40.4 bits (95), Expect = 4e-04
Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 35/169 (20%)
Query: 100 EIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTR--GVM 157
EI + G D G G + + E L +K+ R G
Sbjct: 179 EIVDVLGTAPDVHALPVGNAGNITAYWKGYTE--------YHQ---LGLIDKLPRMLGT- 226
Query: 158 YTKEEAEG-------RRLKNPFDTITEGIGINRLTQNFMMA-----KLDGAFRG-TDREA 204
+A G + +P +TI I I ++ A + G F +D E
Sbjct: 227 ----QAAGAAPLVLGEPVSHP-ETIATAIRIGS-PASWTSAVEAQQQSKGRFLAASDEEI 280
Query: 205 VEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSG 251
+ + + +G+F+ +SA + G ++ + G T+V + +G
Sbjct: 281 LAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNG 329
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 40.2 bits (95), Expect = 5e-04
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTR 154
GT E+ Q +DA V G GG +AG++ ++ P++K + +P + +
Sbjct: 164 GTIALEVLNQVP-LVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSN---ADDCYQ 219
Query: 155 GVMYTKEEAEGRRLKNPF--DTITEGI--GINRLTQNFMMAKLDGAFRGTDREAVEMSRF 210
+G+ + N + +TI +G+ I T + +D F T+ E ++
Sbjct: 220 SK------LKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQL 273
Query: 211 LVKNDGLFL--GSSSAMNCVGAVRVAQSLGPGHTIVTILC 248
+ + L + + + V + I +L
Sbjct: 274 VWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLS 313
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 39.9 bits (94), Expect = 5e-04
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 35/169 (20%)
Query: 100 EIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTR--GVM 157
E+ ++ G G G + + ++ R G
Sbjct: 170 EVVDELGDAPHYHALPVGNAGNITAHWMGYKAY---HALGKAK--------RLPRMLGF- 217
Query: 158 YTKEEAEG-------RRLKNPFDTITEGIGINRLTQNFMMA-----KLDGAFRG-TDREA 204
+A G R ++ P +T+ I I ++ A + G TD E
Sbjct: 218 ----QAAGAAPLVLGRPVERP-ETLATAIRIGN-PASWQGAVRAKEESGGVIEAVTDEEI 271
Query: 205 VEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSG 251
+ R+L + +G+F +SA G ++ + L P T+V L G
Sbjct: 272 LFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHG 320
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 38.6 bits (91), Expect = 0.001
Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 16/158 (10%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTR 154
GT E++E+ G LDA G GG ++G + + PN + + ++P N +
Sbjct: 162 GTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEA---GNDGQQ 217
Query: 155 GVMYTKEEAEGRRLKNPF-DTITEGI---GINRLTQNFMMAKLDGAFRGTDREAVEMSRF 210
+G + TI +G + T + + K+D +D E ++ +F
Sbjct: 218 SF------RKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKF 271
Query: 211 LVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILC 248
+ + + + A R + I I+
Sbjct: 272 YAARMKIVVEPTGCL-SFAAARAMKEKLKNKRIGIIIS 308
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 36.9 bits (86), Expect = 0.006
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 35/169 (20%)
Query: 100 EIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTR--GVM 157
EI + G D G G + + + + K+ R G
Sbjct: 172 EICDTLGEAPDYHFIPVGNAGNITAYWKGFKI--------YYE---EGKITKLPRMMGW- 219
Query: 158 YTKEEAEG-------RRLKNPFDTITEGIGINRLTQNFMMA-----KLDGAFRG-TDREA 204
+AEG +KNP TI I I ++ A + G +D E
Sbjct: 220 ----QAEGAAPIVKGYPIKNP-QTIATAIKIGN-PYSWKSALKAAQESGGKIDAVSDSEI 273
Query: 205 VEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSG 251
+ + + +G+F +SA + G +++ + G + L +G
Sbjct: 274 LYAYKLIASTEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNG 322
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 36.8 bits (86), Expect = 0.007
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIK 137
GT E+ +Q LD G GG AGV+ +++ P IK
Sbjct: 167 GTLALELLQQDA-HLDRVFVPVGGGGLAAGVAVLIKQLMPQIK 208
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 36.0 bits (84), Expect = 0.010
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIK 137
GT G EI Q ++ A G GG +AGV+ F ++ PN K
Sbjct: 196 GTIGTEINRQLK-DIHAVFIPVGGGGLIAGVATFFKQIAPNTK 237
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 35.7 bits (83), Expect = 0.011
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENN-PNIK 137
+ E+ E + A + G GG + GV + LQE ++
Sbjct: 182 ASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVP 225
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 34.8 bits (81), Expect = 0.022
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 96 GT-GPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIK 137
GT G EI E ++D + G GG +AG++ ++ NP IK
Sbjct: 176 GTIGLEIMEDLY-DVDNVIVPIGGGGLIAGIAIAIKSINPTIK 217
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 34.4 bits (80), Expect = 0.028
Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 30/167 (17%)
Query: 96 GT-GPEIWEQT---GGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNK 151
GT G E+ Q G A +A G GG +AG++ ++ +P ++P +
Sbjct: 153 GTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEA---ADD 209
Query: 152 VTRGVMYTKEEAEGRRLKNPF--DTITEGIGINR---LTQNFMMAKLDGAFRGTDREAVE 206
R + GR L+ T +G+ T + ++DG ++ +E
Sbjct: 210 AKRSL------EAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLE 263
Query: 207 MSRFLVKNDGLFL-GSSSAMNCVGAVRVA----QSLGPGHTIVTILC 248
R L + + GA+ +A T+ +L
Sbjct: 264 AERLLFTRTKQVVEPT-------GALPLAAVLEHGARLPQTLALLLS 303
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.037
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 63/176 (35%)
Query: 14 VRPVSITHRD--HFVNVARRRALEANELASKRRRAVDKDG--KEL-EHINGYGSDGAIQS 68
RP++++H H + V A++L ++ K L E G+ +D +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQL---------QEQFNKILPEPTEGFAADDEPTT 56
Query: 69 -----SKFPSDCTGGFFADQFEN-------------LANFRAHYEGTGPEIWEQTGGELD 110
KF G+ + E L F Y G ++
Sbjct: 57 PAELVGKFL-----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE---------GNDIH 102
Query: 111 AFVAA-AGTGGTVAGVSRFLQENNPNIKCF----------LIDPPGSSLFNKVTRG 155
A A T ++ L IK + S+LF V G
Sbjct: 103 ALAAKLLQENDTTLVKTKEL------IKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Score = 31.2 bits (70), Expect = 0.52
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 38/137 (27%)
Query: 4 LEALGATV-ERVR--PVSITHRDHFVNVARRRALEANELASKRRRAVD------KDGKEL 54
+ G ++ + V PV++T HF + + + N A VD K KE+
Sbjct: 1654 KDTYGFSILDIVINNPVNLTI--HF-GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 55 -EHINGY---GSDGAIQSSKF--P-----SDCTGGFFADQFENLANFRAHYEGTGPEIWE 103
EH Y G + +++F P A FE+L + +G P
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLME------KA-AFEDLKS-----KGLIPADAT 1758
Query: 104 QTG---GELDAFVAAAG 117
G GE A + A
Sbjct: 1759 FAGHSLGEYAALASLAD 1775
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.062
Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 85/225 (37%)
Query: 11 VERVRPVSITHRDHFVNVARRRALEANELASKRRRAVDK---------DGKELEHINGYG 61
VE+ +P T ++ ++ + R VD D +++ Y
Sbjct: 417 VEK-QPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY- 472
Query: 62 SDGAIQSSKFPSDCTGGFF---------ADQFENLANFRAHYEGTGPEIWEQTGGELDAF 112
F+ + E + FR + LD F
Sbjct: 473 -----------------FYSHIGHHLKNIEHPERMTLFRMVF--------------LD-F 500
Query: 113 VAAAGTGGTVAGVSRFLQENNPNIK--CFLIDPPGSSLFNKVTRGVMY----TKEEAEGR 166
RFL++ I+ + GS L N + + Y + +
Sbjct: 501 --------------RFLEQ---KIRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYE 542
Query: 167 RLKNPFDTITEGIGIN-------RLTQNFMMAKLDGAFRGTDREA 204
RL N I N L + +MA+ + F ++
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 33.6 bits (77), Expect = 0.065
Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 98 GPEIWEQTGGELDAFVAA--------AGTGGTVAGVSRFL-QENNPNIKCFLIDPPGS-S 147
G + Q + A G GG GV+ L ++ CF +P S
Sbjct: 252 GQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPC 311
Query: 148 LFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIG---INRLTQNFMMAKLDGAFRGTDREA 204
+ V G ++ + + T +G+ + M LDG + +D+
Sbjct: 312 MLLGVHTG---LHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTM 368
Query: 205 VEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS 236
+M +L + +G+ L S+ G RV S
Sbjct: 369 YDMLGWLAQEEGIRLEPSALAGMAGPQRVCAS 400
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 32.9 bits (76), Expect = 0.097
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 96 GT-GPEIWEQTGGELDA-FVAAAGTGGTVAGVSRFLQENNPNIK 137
+ E+ A +A G G V+ L+ ++
Sbjct: 142 ASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVP 185
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 30.5 bits (69), Expect = 0.55
Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 41/176 (23%)
Query: 100 EIWEQTGGEL-DAFVAAAGTGGTVAGVS---RFLQENNPNIKCFLIDPPGSSLFNKVTR- 154
EI +Q ++ D + G G + + QE L+D ++ R
Sbjct: 277 EILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELG------LVD--------RIPRM 322
Query: 155 -GV----------MYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMA-----KLDGAFR 198
Y + + + T I I + A K +G
Sbjct: 323 VCAQAANANPLYLHYKSGWKDFKPMTAS-TTFASAIQIGD-PVSIDRAVYALKKCNGIVE 380
Query: 199 G-TDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSG 251
T+ E ++ + G+F+ + + ++ + P V + G
Sbjct: 381 EATEEELMDAMA-QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHG 435
>2nyi_A Unknown protein; protein structure initiative, PSI, center for
eukaryotic structural genomics, CESG, structural
genomics; 1.80A {Galdieria sulphuraria}
Length = 195
Score = 27.4 bits (60), Expect = 4.0
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 120 GTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI 179
G V S L+ + N+ + L V+ + +G+ +++ ++ G
Sbjct: 17 GIVHDFSWALKNISANV----ESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGF 72
Query: 180 GINRLTQNFMM 190
I+ + +
Sbjct: 73 QISTRRASSVA 83
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 28.1 bits (63), Expect = 4.2
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 79 FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVA 123
+ + +N F+A P T D ++ G+G T+A
Sbjct: 263 WLSLMDQNRIAFQAG--QDVPNTI--TAQFFDLWIYMGGSGATLA 303
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 27.8 bits (62), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 230 AVRVAQSLGPGHTIVTILCDSG-MRHLSK 257
A+RVA+ +G + + DSG M ++SK
Sbjct: 245 AIRVAREMGDKINFLGVRIDSGDMAYISK 273
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.9 bits (60), Expect = 8.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 2 QILEALGATVERVRPVSITHRDHFV 26
L+ LG TV R + + D+ V
Sbjct: 50 AELKNLGFTVTRSKSAGLVVGDNIV 74
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 26.8 bits (60), Expect = 8.7
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 96 GTGPEIWEQTGGELDAFVAAAGTGG 120
G GPEI ++ V A
Sbjct: 34 GIGPEITNAAIKVINKAVERAYGSS 58
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric
oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas
aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Length = 255
Score = 26.6 bits (58), Expect = 9.1
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 2 QILEALGATVERVRPVSITHRDHFVN 27
+ L+ + + P FV
Sbjct: 41 RALQTCDVDITLLPPDERFPDSVFVE 66
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 26.9 bits (60), Expect = 9.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 96 GTGPEIWEQTGGELDAFVAAAGTGG 120
GTG +I +DA V A G
Sbjct: 46 GTGFDITPVMIKVVDAAVEKAYGGK 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,525,073
Number of extensions: 285687
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 58
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)