RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 038224
(282 letters)
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 147 bits (372), Expect = 2e-43
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 76 TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQE-NNP 134
TG +QFEN N +H TGPEI +Q ++DAFVA GTGGT++GV R L+
Sbjct: 127 TGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGN 186
Query: 135 NIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLD 194
+K ++P S + + G +GIG + + + +D
Sbjct: 187 GVKIVAVEPAKSPVLSGGQPG-----------------KHAIQGIGAGFVPKILDRSVID 229
Query: 195 GAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRH 254
D EA EM+R+L K +GL +G SS N A++VAQ LGP +VT+ D R+
Sbjct: 230 EVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAERY 289
Query: 255 LSK 257
LS
Sbjct: 290 LSI 292
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 145 bits (365), Expect = 3e-42
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 17/216 (7%)
Query: 42 KRRRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEI 101
++R + + A + + + G F DQF+N AN RAHYE TGPE+
Sbjct: 100 RKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPEL 159
Query: 102 WEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKE 161
+E G +DAFV +GTGGT+ GV R+L+E P++K ++P S++ + G
Sbjct: 160 YEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMG------ 213
Query: 162 EAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGS 221
+G+G + +N ++ LDG + + +A ++R L + +GLFLG
Sbjct: 214 -----------QHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGM 262
Query: 222 SSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSK 257
SS A++VA+ LGPG + I D G ++LS
Sbjct: 263 SSGGIVWAALQVARELGPGKRVACISPDGGWKYLST 298
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 142 bits (359), Expect = 6e-41
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 76 TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPN 135
DQ+ N +N AHY+ T EI +Q G+LD VA+ GTGGT+ G++R L+E P
Sbjct: 173 PNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG 232
Query: 136 IKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDG 195
+ +DP GS L EGIG + + +D
Sbjct: 233 CRIIGVDPEGSILAEPEELNQTE------------QTTYEVEGIGYDFIPTVLDRTVVDK 280
Query: 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHL 255
F+ D EA +R L+ +GL G S+ AV+ AQ L G V IL DS ++
Sbjct: 281 WFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYM 340
Query: 256 SKFYDVHYLSQQGL 269
+KF ++ Q+G
Sbjct: 341 TKFLSDRWMLQKGF 354
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 140 bits (352), Expect = 4e-40
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 76 TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPN 135
G+ QFEN AN + HYE TGPEIW+ TGG++D FV+ GTGGT+ G ++L+E N N
Sbjct: 138 PNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN 197
Query: 136 IKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDG 195
+K + ++P S++ + G +GIG + + +D
Sbjct: 198 VKLYGVEPVESAILSGGKPG-----------------PHKIQGIGAGFIPSVLNVDLIDE 240
Query: 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRH 254
+ + E+++M+R L +GL +G SS A+++AQ G V I G R+
Sbjct: 241 VVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERY 300
Query: 255 LSKFYDVHYLSQ-QGLTPAA 273
LS + + +T A
Sbjct: 301 LSTVLFDATRKEAEAMTFEA 320
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 134 bits (337), Expect = 4e-38
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 13/202 (6%)
Query: 58 NGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAG 117
G A SD + QFEN AN + H E TGPEIW+ T G++D VA G
Sbjct: 117 KGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVG 176
Query: 118 TGGTVAGVSRFLQEN-NPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTIT 176
TGG++ G+SR ++ + I ++P S + ++ G P
Sbjct: 177 TGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAG-----------EEVKPGPHKI 225
Query: 177 EGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS 236
+GIG + +N ++ +D A+ +R L+ +G+ G SS A R+A+
Sbjct: 226 QGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKL 285
Query: 237 L-GPGHTIVTILCDSGMRHLSK 257
IV IL + R+LS
Sbjct: 286 PEFADKLIVVILPSASERYLST 307
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 131 bits (330), Expect = 4e-37
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 10/197 (5%)
Query: 56 HINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAA 115
G SD QF N AN H + TGPEIWE T G++D F++
Sbjct: 115 GAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISG 174
Query: 116 AGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTI 175
GTGGT+ GV+R+++ + + +A P
Sbjct: 175 VGTGGTLTGVTRYIKGTKGKTDLITVAVEPT---------DSPVIAQALAGEEIKPGPHK 225
Query: 176 TEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ 235
+GIG + N + +D T+ EA+ +R L++ +G+ G SS A+++ +
Sbjct: 226 IQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQE 285
Query: 236 S-LGPGHTIVTILCDSG 251
IV IL SG
Sbjct: 286 DESFTNKNIVVILPSSG 302
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 112 bits (280), Expect = 5e-30
Identities = 63/201 (31%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 56 HINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAA 115
G +GA + ++ G DQF N N AHY TGPEIW+QTGG + FV++
Sbjct: 112 VTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSS 171
Query: 116 AGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTI 175
GT GT+ GVSRF++E + + + P S + R
Sbjct: 172 MGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------------------ 213
Query: 176 TEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQ 235
L F + +D R+A R L +G+F G SS GA+RVA+
Sbjct: 214 ------EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK 267
Query: 236 SLGPGHTIVTILCDSGMRHLS 256
P +V I+CD G R+LS
Sbjct: 268 -ANPDAVVVAIICDRGDRYLS 287
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 92.7 bits (229), Expect = 2e-22
Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 19/211 (9%)
Query: 56 HINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAA 115
++G D A + S G + F++ +GT Q LD
Sbjct: 125 LLHGANFDEAKAKAIELSQQQGFTWVPPFDH--PMVIAGQGTLALELLQQDAHLDRVFVP 182
Query: 116 AGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTI 175
G GG AGV+ +++ P IK ++ S+ + +A
Sbjct: 183 VGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA--------CLKAALDAGHPVDLPRVGLF 234
Query: 176 TEGIGINR---LTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVR 232
EG+ + R T LD + L ++ S A+ G +
Sbjct: 235 AEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKK 294
Query: 233 -VAQSLGPGHTIVTILCDS-----GMRHLSK 257
+A G + IL + G+R++S+
Sbjct: 295 YIALHNIRGERLAHILSGANVNFHGLRYVSE 325
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 87.5 bits (216), Expect = 2e-20
Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 29/208 (13%)
Query: 58 NGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQT---GGELDAFVA 114
+ + S G +QF N ANF AH GT EI+ Q+ G L
Sbjct: 198 EAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAG 257
Query: 115 AAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDT 174
+ GT G ++ + +LQ +P+I+ L+ P + + G N D
Sbjct: 258 SLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQ-------GDSIPGIRRVETGMLWINMLDI 310
Query: 175 ITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVA 234
+ T EA+E + ++DGL +G S + A
Sbjct: 311 SYTLAEV------------------TLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKA 352
Query: 235 QSLG-PGHTIVTILCDSGMRHLSKFYDV 261
V ++ D+G ++LS +
Sbjct: 353 AEGDLEPGDYVVVVPDTGFKYLSLVQNA 380
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 86.5 bits (213), Expect = 5e-20
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 17/194 (8%)
Query: 75 CTGGFFADQFENLANFRAHYEGTGPEI---WEQTGGELDAFVAAAGTGGTVAGVSRFLQE 131
G R G E + G+L + A GG+ A +
Sbjct: 181 YLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240
Query: 132 NNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI------------ 179
N+ +K ++ G L + + + + + F EG
Sbjct: 241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLD 300
Query: 180 --GINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL 237
G+ + TD EA++ L + +G+ SA A+++A+ +
Sbjct: 301 YPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM 360
Query: 238 GPGHTIVTILCDSG 251
I+ L G
Sbjct: 361 SRDEIIIVNLSGRG 374
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 82.3 bits (202), Expect = 9e-19
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 8/173 (4%)
Query: 76 TGGFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPN 135
G +++ + A E++E+ G LDA G GG ++G + + PN
Sbjct: 139 EGLTIIPPYDH-PHVLAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPN 196
Query: 136 IKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDG 195
+ + ++P + + R + + T + + K+D
Sbjct: 197 CEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQ-----TQHLGNYTFSIIKEKVDD 251
Query: 196 AFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILC 248
+D E ++ +F + + + ++ A R + I I+
Sbjct: 252 ILTVSDEELIDCLKFYAARMKIVVEPTGCLS-FAAARAMKEKLKNKRIGIIIS 303
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 69.6 bits (169), Expect = 2e-14
Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 8/175 (4%)
Query: 76 TGGFFADQFENLANFRAHYEGTGPEIWE--QTGGELDAFVAAAGTGGTVAGVSRFLQENN 133
TG F++ + + + G A +A G GG +AG++ ++ +
Sbjct: 134 TGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALS 193
Query: 134 PNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKL 193
P ++P + + + EA R + T++ G T + ++
Sbjct: 194 PTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG----ERTFPILRERV 249
Query: 194 DGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILC 248
DG ++ +E R L + + A+ + L T+ +L
Sbjct: 250 DGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL--PQTLALLLS 302
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 60.1 bits (144), Expect = 5e-11
Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 15/172 (8%)
Query: 78 GFFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIK 137
+ Y EI Q+ + D+ V AAG+GGT+AG+S L N +I+
Sbjct: 151 PYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIR 210
Query: 138 CFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAF 197
I E +L N E +G+ + + G +
Sbjct: 211 PVGIAVGRFG--------------EVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEY 256
Query: 198 RGTDREAVEMSRFLVKNDGLFLG-SSSAMNCVGAVRVAQSLGPGHTIVTILC 248
E ++ R + +G+ L + G V +A+ G I+ I
Sbjct: 257 GKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIHT 308
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 55.5 bits (132), Expect = 2e-09
Identities = 23/186 (12%), Positives = 47/186 (25%), Gaps = 17/186 (9%)
Query: 79 FFADQFENLANFRAHYEGTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQE------N 132
A + + E+ ++ G G G + +
Sbjct: 149 PVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKA 208
Query: 133 NPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAK 192
+ G++ R +
Sbjct: 209 KRLPRMLGFQAAGAAPL---------VLGRPVERPETLATAIRIGNPASWQGAVRAKEES 259
Query: 193 LDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDS 250
TD E + R+L + +G+F +SA G ++ + L P T+V L
Sbjct: 260 GGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGH 319
Query: 251 GMRHLS 256
G++ +
Sbjct: 320 GLKDPA 325
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 55.2 bits (132), Expect = 2e-09
Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 18/192 (9%)
Query: 78 GFFADQFENLANFRAHYEGTGPEIWEQ---TGGELDAFVAAAGTGGTVAGVSRFLQENNP 134
G A R G E Q G L V A GG+ A N+
Sbjct: 188 GTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDT 247
Query: 135 NIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGI--------------G 180
++ ++P G + + +K P +G
Sbjct: 248 SVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPS 307
Query: 181 INRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSL-GP 239
+ TD EA+E + L +++G+ S+ A+++ +
Sbjct: 308 VGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEK 367
Query: 240 GHTIVTILCDSG 251
+V L G
Sbjct: 368 EQLLVVNLSGRG 379
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 51.2 bits (121), Expect = 4e-08
Identities = 18/179 (10%), Positives = 45/179 (25%), Gaps = 18/179 (10%)
Query: 78 GFFADQFENLANFRAHYEGTGPEIWEQT-----GGELDAFVAAAGTGGTVAGVSRFLQEN 132
+A + G + G + D V + TG T AG+ +
Sbjct: 154 KPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAAD 213
Query: 133 NPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAK 192
+ +D + + + + + I R
Sbjct: 214 GRADRVIGVDASAKPAQTREQITRIA----------RQTAEKVGLERDIMRADVVLDERF 263
Query: 193 LDGAFRGTDREAVEMSRFLVKNDGLFLG-SSSAMNCVGAVRVAQS--LGPGHTIVTILC 248
+ + +E R + +G+ + G + + ++ G ++
Sbjct: 264 AGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHL 322
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 47.3 bits (111), Expect = 9e-07
Identities = 19/216 (8%), Positives = 47/216 (21%), Gaps = 10/216 (4%)
Query: 51 GKELEHINGYGSDGAIQSSKFPSDCTGGFFADQFENLANFRAHYEGTGPEIWEQTGGELD 110
++ + N + + D
Sbjct: 220 ANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPD 279
Query: 111 AFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKN 170
+ G G + + + I + ++ K + +
Sbjct: 280 WVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMT 339
Query: 171 PFDTITEGIGINRLTQ----NFMMAKLDGAFRGTDREAVEMSRFLVKNDGLFLGSSSAMN 226
T I I + + K +G E + + + G+F+ + +
Sbjct: 340 ASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVA 399
Query: 227 CVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFYD 260
++ + P V + G KF
Sbjct: 400 LTALFKLRNQGVIAPTDRTVVVSTAHG----LKFTQ 431
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 43.1 bits (100), Expect = 2e-05
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 18/181 (9%)
Query: 74 DCTGGFFADQFENLANFRAHYEGTGPEIWEQTG---GELDAFVAAAGTGGTVAGVSRFLQ 130
+ G E+ Q + D V TG T AG+ +
Sbjct: 155 GHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMA 214
Query: 131 ENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMM 190
+ ID + TKE+ G+
Sbjct: 215 QYGRQDDVIAIDASFT---------SEKTKEQTLRIA---NNTAKLIGVEHEFKDFTLDT 262
Query: 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLG-SSSAMNCVGAVRVAQS--LGPGHTIVTIL 247
+ + +E R + +G+ + G + + + PG ++ +
Sbjct: 263 RFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVH 322
Query: 248 C 248
Sbjct: 323 L 323
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 27.4 bits (60), Expect = 2.0
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 110 DAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLK 169
D + GT V + + + + LI+ + + +M + K
Sbjct: 222 DLLLVM-GTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKK 280
Query: 170 NPFDTITEG 178
D G
Sbjct: 281 AYRDVAWLG 289
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 27.0 bits (59), Expect = 3.0
Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 27/181 (14%)
Query: 96 GTGPEIWEQTGGELDAFVAAAGTGGTVAGVSRFLQENNPNIKCFLIDPPGSSLFNKVTRG 155
+W G + + G V V+ F+ P + +S F + +
Sbjct: 198 NVEKVLWLGDGIDPEET------NGHVDDVACFI---APGEVACIYTEDQNSPFYEAAQD 248
Query: 156 V---MYTKEEAEGRRLKN-----PFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEM 207
+ +A+GR+LK P +T M + DG D
Sbjct: 249 AYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDG-----DICIASY 303
Query: 208 SRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFYD-VHYLSQ 266
FL+ NDG+ + N A+ Q++ P IV + + +H ++Q
Sbjct: 304 MNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNT----VEVVYGGGNIHXITQ 359
Query: 267 Q 267
Q
Sbjct: 360 Q 360
>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein
ProX {Escherichia coli [TaxId: 562]}
Length = 309
Score = 26.4 bits (57), Expect = 4.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 1 SQILEALGATVERVRPVSIT 20
S+ LE LG TV + V
Sbjct: 28 SRALEKLGYTVNKPSEVDYN 47
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 26.3 bits (58), Expect = 4.4
Identities = 9/91 (9%), Positives = 26/91 (28%)
Query: 131 ENNPNIKCFLIDPPGSSLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRLTQNFMM 190
+ K ++ P +P + + + + +
Sbjct: 381 DTFKRRKGKPVEIPNIKTKVVAGFSTEAIINALSKLNANDPLKPLIDNVVNGNIRGVCLF 440
Query: 191 AKLDGAFRGTDREAVEMSRFLVKNDGLFLGS 221
A + D+ ++R L+K + L + +
Sbjct: 441 AGCNNVKVPQDQNFTTIARKLLKQNVLVVAT 471
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 25.4 bits (55), Expect = 5.8
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 44 RRAVDKDGKELEHINGYGSDGAIQSSKFPSDCTGGFFADQF 84
R A + E+ IN D D G F +
Sbjct: 17 RAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV 57
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 26.1 bits (57), Expect = 5.8
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 185 TQNFMMAKLDGAFR-----------GTDREAVEMSRFLVKNDG-LFLGSSSAMNCVGAVR 232
+ + DG G DR + +R+ + D + LGS + + + V
Sbjct: 318 YYSGLQEPWDGPALLVFSDGKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVD 377
Query: 233 VAQ--SLGPGHTIV 244
+ + L PG I
Sbjct: 378 IVEKGRLAPGQMIA 391
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 26.0 bits (57), Expect = 7.3
Identities = 7/64 (10%), Positives = 20/64 (31%)
Query: 158 YTKEEAEGRRLKNPFDTITEGIGINRLTQNFMMAKLDGAFRGTDREAVEMSRFLVKNDGL 217
+P + + + + + + D V++++ L K + L
Sbjct: 389 AVVAALAKVNADDPLKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYVDLAKSLAKRNVL 448
Query: 218 FLGS 221
L +
Sbjct: 449 VLAT 452
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 25.5 bits (55), Expect = 7.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 96 GTGPEIWEQTGGELDAFVAAAG 117
G GPE+ E L A A G
Sbjct: 10 GIGPEVTEAALKVLRALDEAEG 31
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 93
Score = 24.1 bits (52), Expect = 9.9
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 109 LDAFVAAAGTGGTVAGVSRFLQENNPNI-----KCFLIDPPGSSLFNKVTRGVMYTKEEA 163
++ +V + G ++F + + + D S
Sbjct: 7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGC 66
Query: 164 EGRRLKNPFDTITEGIGIN 182
+L+ FD + + +
Sbjct: 67 NLMQLQEEFDALCTALDVQ 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,058,007
Number of extensions: 49322
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 33
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)