BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038225
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9K2|CP123_ARATH Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana
GN=CP12-3 PE=1 SV=1
Length = 134
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 52/62 (83%)
Query: 43 VKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRL 102
K AK+ GT MRE++L+EMIE+KV+EA EVC+ +E S E +VAWD+VEEVSQA+ADLR+
Sbjct: 47 TKATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRI 106
Query: 103 KL 104
KL
Sbjct: 107 KL 108
>sp|O22914|CP121_ARATH Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana
GN=CP12-1 PE=1 SV=1
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 42 NVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLR 101
++K M K T E E++E +E+ ++EAKE C D S E AWD+VEE+S A + R
Sbjct: 38 SMKRMVVVKATS--EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHAR 95
Query: 102 LK 103
K
Sbjct: 96 DK 97
>sp|Q9LZP9|CP122_ARATH Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana
GN=CP12-2 PE=1 SV=1
Length = 131
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 59 LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103
+++++E+ ++EA+E C GD S E AWD+VEE+S A + R K
Sbjct: 60 ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 104
>sp|Q49Y56|SYA_STAS1 Alanine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=alaS
PE=3 SV=1
Length = 876
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 18 QESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMR--EKELTEMIEQKVREAKEVCQ 75
+ +FL+L + F K VKV K HM+ EKELT+ +EQK +E +
Sbjct: 702 KSAFLYLET-IQSQFNAVKSQVKVKSDDQVLEKIVHMQDEEKELTKQLEQKNKEVTSLKM 760
Query: 76 GDETSVEYKVAWDQVEEVSQAK 97
GD T +QVEE++ K
Sbjct: 761 GDIT--------NQVEEINGLK 774
>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas
reinhardtii GN=CP12 PE=1 SV=2
Length = 107
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 58 ELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQA 96
+L + ++ V+EA++ C TS + VAWD VEE+S A
Sbjct: 34 DLNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAA 71
>sp|Q12163|NBP2_YEAST NAP1-binding protein 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NBP2 PE=1 SV=1
Length = 236
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 59 LTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLKL 104
LT +I Q V + +E + W+ +++V++ +AD++ KL
Sbjct: 187 LTHLITQSVSPKNNIDNTNEDEYDDNDEWEDIDDVAEVEADMKTKL 232
>sp|Q6KHE8|TRMB_MYCMO tRNA (guanine-N(7)-)-methyltransferase OS=Mycoplasma mobile
(strain ATCC 43663 / 163K / NCTC 11711) GN=trmB PE=3
SV=1
Length = 201
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 10 QVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMRE--------KELTE 61
++G G+GT S L L++ + C++++ + K + KF +++ + LTE
Sbjct: 34 ELGSGKGTMISALALKNPSQNYLCVERDRT-IASKAIEKFNDLNLKNINLIVSDIQHLTE 92
Query: 62 MIEQKVR 68
+IE KV
Sbjct: 93 IIENKVN 99
>sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC2 PE=3 SV=1
Length = 337
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 34 LKKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEV 93
L+KE + VK + +R++EL E ++ ++ K++ E +V K +++ EV
Sbjct: 215 LRKEGTGLLVKWANEDPNPAVRKRELEEQTQETLKAIKQLVASTEGTVNQKRKVEEINEV 274
Query: 94 SQAKADLR 101
++A+ R
Sbjct: 275 RDSQANSR 282
>sp|Q05152|CAC1B_RABIT Voltage-dependent N-type calcium channel subunit alpha-1B
OS=Oryctolagus cuniculus GN=CACNA1B PE=1 SV=1
Length = 2339
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 6 ALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFKGTHMREKELTEMIEQ 65
+ +Q GV RG SF F+ + + L + + V +A + E+E+ E Q
Sbjct: 673 GIESQGGVSRGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEMEEAANQ 732
Query: 66 K--VREAKEVCQ 75
K +++AKEV +
Sbjct: 733 KLALQKAKEVAE 744
>sp|P00553|KKA4_BACCI Aminoglycoside 3'-phosphotransferase OS=Bacillus circulans GN=butA
PE=1 SV=1
Length = 262
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 35 KKETVKVNVKGMAKFKGTHMREKELTEMIEQKVREAKEVCQGDETSVE 82
+K VK+ +G+ G +RE L+ +E+K+R+AK + DE+ V+
Sbjct: 107 RKLFVKLYAEGLRSVHGLDIRECPLSNGLEKKLRDAKRIV--DESLVD 152
>sp|O08523|TECTA_MOUSE Alpha-tectorin OS=Mus musculus GN=Tecta PE=1 SV=2
Length = 2155
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 1 MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFK 50
+T LG + AQ G G +F L S +ET VNV G FK
Sbjct: 199 LTGLGGVMAQAGFNGGNLTNFFSLPGSRTPEIVNIQETTNVNVPGRWAFK 248
>sp|O75443|TECTA_HUMAN Alpha-tectorin OS=Homo sapiens GN=TECTA PE=1 SV=3
Length = 2155
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 1 MTSLGALSAQVGVGRGTQESFLFLRSSCGDAFCLKKETVKVNVKGMAKFK 50
+T LG + AQ G G +F L S +ET VNV G FK
Sbjct: 199 LTGLGGVMAQAGFNGGNLTNFFSLPGSRTPEIVNIQETTNVNVPGRWAFK 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,755,875
Number of Sequences: 539616
Number of extensions: 1092383
Number of successful extensions: 4283
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4270
Number of HSP's gapped (non-prelim): 28
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)