Query 038225
Match_columns 104
No_of_seqs 103 out of 117
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00204 CP12 gene family prot 99.8 1.6E-20 3.5E-25 138.0 5.9 54 48-103 48-101 (126)
2 PF02672 CP12: CP12 domain; I 99.6 5.6E-17 1.2E-21 108.0 0.0 45 59-103 1-46 (71)
3 PF03194 LUC7: LUC7 N_terminus 30.6 1.5E+02 0.0032 23.6 5.4 44 56-100 125-168 (254)
4 COG3079 Uncharacterized protei 27.9 87 0.0019 24.9 3.6 42 52-93 116-161 (186)
5 PRK04758 hypothetical protein; 22.9 1.1E+02 0.0025 23.4 3.3 39 54-92 115-157 (181)
6 PRK02166 hypothetical protein; 21.4 1.2E+02 0.0026 23.3 3.1 39 54-92 117-158 (184)
7 PF11242 DUF2774: Protein of u 20.8 2E+02 0.0043 19.4 3.7 28 65-95 15-42 (63)
8 PF08134 cIII: cIII protein fa 20.4 1.5E+02 0.0033 18.7 2.9 20 53-72 16-35 (44)
9 KOG0796 Spliceosome subunit [R 19.9 2.7E+02 0.0059 23.8 5.2 39 56-95 124-162 (319)
10 PF08285 DPM3: Dolichol-phosph 18.0 1E+02 0.0022 21.3 2.0 17 56-72 66-82 (91)
No 1
>PLN00204 CP12 gene family protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=137.96 Aligned_cols=54 Identities=35% Similarity=0.534 Sum_probs=48.7
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225 48 KFKGTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103 (104)
Q Consensus 48 k~~~~~pk~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k 103 (104)
|+.+ ..+.+|+++|+++|++||++|+++++|++|++|||+|||||||++|||++
T Consensus 48 ~~v~--a~~~~L~e~Ie~aI~eArevCa~g~~S~eCaaAWDeVEELqAeasHqr~~ 101 (126)
T PLN00204 48 RPVR--AAPEGISEKVEKSIKEAEETCADDPASGECVAAWDEVEELSAAASHARDK 101 (126)
T ss_pred Eeee--cCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 4444 55567999999999999999999999999999999999999999999875
No 2
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=99.62 E-value=5.6e-17 Score=107.98 Aligned_cols=45 Identities=38% Similarity=0.646 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225 59 LTEMIEQKVREAKEVCQGD-ETSVEYKVAWDQVEEVSQAKADLRLK 103 (104)
Q Consensus 59 L~e~IeeaI~eAreiCa~~-~~S~ECaaAWD~VEELqAEASHqr~k 103 (104)
|+++|+++|++||++|+++ .+|++|++|||+||||||+++||+.+
T Consensus 1 l~e~Ie~~i~eA~~~c~~~g~~s~ec~~AWdeVEELqa~~~h~~~~ 46 (71)
T PF02672_consen 1 LEEKIEKAIEEAREACAEGGANSAECRHAWDEVEELQAEASHQRQE 46 (71)
T ss_dssp ----------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHcccc
Confidence 6899999999999999977 99999999999999999999999764
No 3
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=30.63 E-value=1.5e+02 Score=23.62 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhh
Q 038225 56 EKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADL 100 (104)
Q Consensus 56 ~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHq 100 (104)
-..|.++|.+.+++|++.=. ..+-.++-.....||+|.++..-.
T Consensus 125 i~~l~~~I~~ll~~aE~LGe-eG~VdeA~~~~~~~e~Lk~ek~~l 168 (254)
T PF03194_consen 125 IDELDEKIGELLKEAEELGE-EGDVDEAQKLMEEVEKLKEEKEEL 168 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999997653 366788889999999999887543
No 4
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.86 E-value=87 Score=24.95 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHhh
Q 038225 52 THMREKELTEMIEQKVREAKEVCQ----GDETSVEYKVAWDQVEEV 93 (104)
Q Consensus 52 ~~pk~~~L~e~IeeaI~eAreiCa----~~~~S~ECaaAWD~VEEL 93 (104)
+.|+-..+..++.++|.+-++||+ ++.|+.|=+.+-.+|.|-
T Consensus 116 ~~~~l~~~~gE~~EaldDL~~iaQlg~Deded~EE~~~~leEiiEy 161 (186)
T COG3079 116 TQPKLSKLTGEAGEALDDLANIAQLGYDEDEDQEELEESLEEIIEY 161 (186)
T ss_pred cccchhhhcccHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHH
Confidence 678888899999999999999998 337778888888888774
No 5
>PRK04758 hypothetical protein; Validated
Probab=22.89 E-value=1.1e+02 Score=23.37 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHh
Q 038225 54 MREKELTEMIEQKVREAKEVCQG----DETSVEYKVAWDQVEE 92 (104)
Q Consensus 54 pk~~~L~e~IeeaI~eAreiCa~----~~~S~ECaaAWD~VEE 92 (104)
++...+.+.+.++|++-.+|+.- +.++.|...++.+|-|
T Consensus 115 ~~~~~~s~e~~E~L~Dl~~Iaql~~d~~ed~ee~E~al~El~E 157 (181)
T PRK04758 115 QQRPALSEEGEEALQDLARLAQASSDDFDAAEEDDTALAEIEE 157 (181)
T ss_pred cccccCCHHHHHHHHHHHHHHccCCCcccCchHHHHHHHHHHH
Confidence 56667788999999999999872 2567899999998877
No 6
>PRK02166 hypothetical protein; Reviewed
Probab=21.39 E-value=1.2e+02 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHh
Q 038225 54 MREKELTEMIEQKVREAKEVCQGD---ETSVEYKVAWDQVEE 92 (104)
Q Consensus 54 pk~~~L~e~IeeaI~eAreiCa~~---~~S~ECaaAWD~VEE 92 (104)
++...+.+++.++|++-.+|+.-+ .++.|...|+.+|-|
T Consensus 117 ~~~~~~s~e~~E~l~Dl~~Iaql~~d~dd~ee~E~al~Ei~E 158 (184)
T PRK02166 117 AGGKDLSGEAKEVLQDLAAISQVQDALEESEDGETDYMEVME 158 (184)
T ss_pred cCccCCCHHHHHHHHHHHHHHccCCCCCCCchHHHHHHHHHH
Confidence 333457889999999999998722 467899999988877
No 7
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=20.83 E-value=2e+02 Score=19.39 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhhHH
Q 038225 65 QKVREAKEVCQGDETSVEYKVAWDQVEEVSQ 95 (104)
Q Consensus 65 eaI~eAreiCa~~~~S~ECaaAWD~VEELqA 95 (104)
.-|+-||.+ +.+..|-+.+|-.||+-.+
T Consensus 15 ~FveIAr~~---~i~a~e~a~~w~~Ve~Ak~ 42 (63)
T PF11242_consen 15 SFVEIARKI---GITAKEVAKAWAEVETAKE 42 (63)
T ss_pred cHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence 346778876 6788999999999997653
No 8
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.38 E-value=1.5e+02 Score=18.67 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.2
Q ss_pred cCChHHHHHHHHHHHHHHHH
Q 038225 53 HMREKELTEMIEQKVREAKE 72 (104)
Q Consensus 53 ~pk~~~L~e~IeeaI~eAre 72 (104)
+|.+..|+.+|.+-|..|+.
T Consensus 16 YP~ESELskr~rrLIRaa~k 35 (44)
T PF08134_consen 16 YPTESELSKRIRRLIRAARK 35 (44)
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 49999999999999988875
No 9
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=19.85 E-value=2.7e+02 Score=23.77 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHH
Q 038225 56 EKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQ 95 (104)
Q Consensus 56 ~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqA 95 (104)
-..|.++|..-+++|.+.=.+ .+-.+|-.+-++||+|.+
T Consensus 124 v~~l~e~I~~~l~~~E~LG~e-G~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 124 VHELEEKIGKLLEKAEELGEE-GNVEEAQKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHH
Confidence 445889999999999987643 677899999999999997
No 10
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=18.03 E-value=1e+02 Score=21.31 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038225 56 EKELTEMIEQKVREAKE 72 (104)
Q Consensus 56 ~~~L~e~IeeaI~eAre 72 (104)
-++=.+++++.|+|||+
T Consensus 66 cpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKA 82 (91)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34445666666777764
Done!