Query 038225
Match_columns 104
No_of_seqs 103 out of 117
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lj9_A CP12 domain-containing 99.8 1.3E-20 4.4E-25 132.5 0.0 53 51-103 20-72 (99)
2 3qv1_G CP12 protein; rossman f 99.8 7.1E-20 2.4E-24 125.0 0.0 47 57-103 9-55 (82)
3 2kmf_A Photosystem II 11 kDa p 19.8 94 0.0032 21.6 3.2 23 51-73 88-110 (115)
4 2y6x_A PSB27, photosystem II 1 18.9 1E+02 0.0035 21.4 3.2 23 51-73 84-106 (113)
5 3r8n_R 30S ribosomal protein S 14.7 1E+02 0.0035 18.7 2.1 15 59-73 32-46 (55)
6 2l7a_A Talin-1; vinculin, bund 13.0 2.4E+02 0.0081 19.8 4.0 37 57-94 81-118 (131)
7 1r7l_A Phage protein; structur 12.3 75 0.0026 22.4 1.1 17 79-95 45-61 (110)
8 2bni_A General control protein 10.9 1.7E+02 0.0057 16.8 2.1 20 55-74 2-21 (34)
9 3oyv_A Imelysin; outer membran 10.9 5.3E+02 0.018 20.4 5.8 42 57-98 158-206 (361)
10 2bjo_A Organic hydroperoxide r 10.9 1.6E+02 0.0054 19.2 2.3 16 60-75 105-120 (136)
No 1
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=1.3e-20 Score=132.52 Aligned_cols=53 Identities=38% Similarity=0.612 Sum_probs=0.0
Q ss_pred cccCChHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225 51 GTHMREKELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103 (104)
Q Consensus 51 ~~~pk~~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k 103 (104)
...|++.+|+++|+++|++||++|+++++|++|++|||+||||||+++|||++
T Consensus 20 ~~~p~~~~L~e~Ie~ai~eAr~~Ca~g~~S~eCa~AWd~VEELqAeashqr~~ 72 (99)
T 2lj9_A 20 HMAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 72 (99)
T ss_dssp -----------------------------------------------------
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhChhc
Confidence 34588889999999999999999998899999999999999999999999875
No 2
>3qv1_G CP12 protein; rossman fold, calvin cycle, NAD, chloroplast, oxidoreductase binding complex; HET: NAD; 2.00A {Arabidopsis thaliana} PDB: 3rvd_I*
Probab=99.75 E-value=7.1e-20 Score=125.03 Aligned_cols=47 Identities=40% Similarity=0.695 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhhhhhc
Q 038225 57 KELTEMIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAKADLRLK 103 (104)
Q Consensus 57 ~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEASHqr~k 103 (104)
..|+++|+++|++||++|+++++|++|++|||+||||||+++|||.+
T Consensus 9 ~~l~e~Ie~~I~~Ar~ic~~~~~S~eCa~AWdeVEELqaeash~~~~ 55 (82)
T 3qv1_G 9 GGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDK 55 (82)
T ss_dssp -----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 46999999999999999998899999999999999999999999875
No 3
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=19.84 E-value=94 Score=21.59 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.7
Q ss_pred cccCChHHHHHHHHHHHHHHHHH
Q 038225 51 GTHMREKELTEMIEQKVREAKEV 73 (104)
Q Consensus 51 ~~~pk~~~L~e~IeeaI~eArei 73 (104)
|+.|-+..+.++|++.+.+|+..
T Consensus 88 g~~PlPek~k~Rl~~el~~AE~a 110 (115)
T 2kmf_A 88 GARPIPEKLKKRLQLEFTQAERS 110 (115)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999864
No 4
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=18.92 E-value=1e+02 Score=21.41 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred cccCChHHHHHHHHHHHHHHHHH
Q 038225 51 GTHMREKELTEMIEQKVREAKEV 73 (104)
Q Consensus 51 ~~~pk~~~L~e~IeeaI~eArei 73 (104)
|+.|-+..+.++|++.+.+|+..
T Consensus 84 g~~PlPek~k~Rl~~el~~AE~a 106 (113)
T 2y6x_A 84 PNRPLPEKLKARLEQEFKQVELA 106 (113)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999864
No 5
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=14.74 E-value=1e+02 Score=18.73 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 038225 59 LTEMIEQKVREAKEV 73 (104)
Q Consensus 59 L~e~IeeaI~eArei 73 (104)
-+.+|.++|+.||..
T Consensus 32 ~QR~l~~AIKrAR~~ 46 (55)
T 3r8n_R 32 YQRQLARAIKRARYL 46 (55)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 488999999999974
No 6
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=13.03 E-value=2.4e+02 Score=19.78 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHhhH
Q 038225 57 KELTEMIEQKVREAKEVCQGDETSVEYKVAWDQ-VEEVS 94 (104)
Q Consensus 57 ~~L~e~IeeaI~eAreiCa~~~~S~ECaaAWD~-VEELq 94 (104)
..|.+-+..-|+.||. |+.++++.+-..+|.+ .|+|.
T Consensus 81 k~La~At~~MVeaAK~-~A~NP~d~~~q~~Lr~Aae~L~ 118 (131)
T 2l7a_A 81 KILADATAKMVEAAKG-AAAHPDSEEQQQRLREAAEGLR 118 (131)
T ss_dssp HHHHHHHHHHHHHHHH-HHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHH
Confidence 3477777777888885 8888999999999954 45554
No 7
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=12.32 E-value=75 Score=22.43 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=13.2
Q ss_pred CcHHHHHHHHHHHhhHH
Q 038225 79 TSVEYKVAWDQVEEVSQ 95 (104)
Q Consensus 79 ~S~ECaaAWD~VEELqA 95 (104)
-|..=.+||+.||.|..
T Consensus 45 ~S~ni~~AW~VVEKlr~ 61 (110)
T 1r7l_A 45 YSQNIESAWQVVEKLEY 61 (110)
T ss_dssp TTTCHHHHHHHHHHSSS
T ss_pred CCccHHHHHHHHHHHHh
Confidence 35666799999998763
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=10.90 E-value=1.7e+02 Score=16.80 Aligned_cols=20 Identities=20% Similarity=0.609 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q 038225 55 REKELTEMIEQKVREAKEVC 74 (104)
Q Consensus 55 k~~~L~e~IeeaI~eAreiC 74 (104)
++..|++++++-+.+-.++|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHH
Confidence 34678888888888888877
No 9
>3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A*
Probab=10.87 E-value=5.3e+02 Score=20.40 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhc-------CCCCcHHHHHHHHHHHhhHHHHh
Q 038225 57 KELTEMIEQKVREAKEVCQ-------GDETSVEYKVAWDQVEEVSQAKA 98 (104)
Q Consensus 57 ~~L~e~IeeaI~eAreiCa-------~~~~S~ECaaAWD~VEELqAEAS 98 (104)
..|..+|..+|.+|...=. ...+..+..+|.|.+.+|+....
T Consensus 158 ~~L~~~i~~a~~~a~~~i~ai~~Pf~~~i~~~~~r~a~~a~~~L~~~l~ 206 (361)
T 3oyv_A 158 SSLDTKIKNAIQKAAKAIQDIPQPFRNHIPSNETVAAMDACAELESILK 206 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCGGGCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3566666766666665433 23567999999999999988665
No 10
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=10.85 E-value=1.6e+02 Score=19.15 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 038225 60 TEMIEQKVREAKEVCQ 75 (104)
Q Consensus 60 ~e~IeeaI~eAreiCa 75 (104)
++++++.++.|++.|-
T Consensus 105 ~e~~~~l~~~a~~~Cp 120 (136)
T 2bjo_A 105 REKAQELVNAAHEFCP 120 (136)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhCc
Confidence 5788999999999994
Done!