Query 038225
Match_columns 104
No_of_seqs 103 out of 117
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzma1 a.2.19.1 (A:456-501) F 30.3 29 0.0021 19.7 3.4 25 62-97 10-34 (46)
2 d2qalr1 a.4.8.1 (R:19-73) Ribo 12.8 59 0.0043 18.2 2.1 16 58-73 31-46 (55)
3 d1uspa_ d.227.1.1 (A:) Organic 12.8 60 0.0044 19.3 2.3 17 59-75 104-120 (137)
4 d1jm6a2 d.122.1.4 (A:1177-1366 12.3 47 0.0034 21.4 1.8 28 48-75 2-29 (190)
5 d1vjta2 d.162.1.2 (A:192-469) 11.6 73 0.0053 21.9 2.7 33 62-94 232-264 (278)
6 d1y8oa2 d.122.1.4 (A:177-301) 11.4 57 0.0042 18.3 1.8 28 48-75 6-33 (125)
7 d1outa_ a.1.1.2 (A:) Hemoglobi 10.7 1.7E+02 0.012 17.5 4.5 29 63-91 102-130 (142)
8 d3d1ka1 a.1.1.2 (A:1-142) Hemo 10.7 1.7E+02 0.012 17.5 4.5 29 63-91 102-130 (142)
9 d1n2fa_ d.227.1.1 (A:) Organic 9.9 84 0.0061 18.8 2.3 16 60-75 110-125 (142)
10 d1k78a1 a.4.1.5 (A:19-81) Pax- 9.8 56 0.0041 18.9 1.3 40 49-88 9-51 (63)
No 1
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.30 E-value=29 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHH
Q 038225 62 MIEQKVREAKEVCQGDETSVEYKVAWDQVEEVSQAK 97 (104)
Q Consensus 62 ~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELqAEA 97 (104)
-|..-|++|++.+ -||+||=|+.-.
T Consensus 10 ~ik~yI~QAk~a~-----------R~dEV~~Le~NL 34 (46)
T d1yzma1 10 NITSFIRQAKAAG-----------RMDEVRTLQENL 34 (46)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----------chHHHHHHHHHH
Confidence 4788899999877 389998665543
No 2
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=12.78 E-value=59 Score=18.22 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 038225 58 ELTEMIEQKVREAKEV 73 (104)
Q Consensus 58 ~L~e~IeeaI~eArei 73 (104)
.-+.+|.++|+.||..
T Consensus 31 k~Qr~l~~aIkrAR~~ 46 (55)
T d2qalr1 31 KYQRQLARAIKRARYL 46 (55)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3478999999999975
No 3
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=12.78 E-value=60 Score=19.33 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 038225 59 LTEMIEQKVREAKEVCQ 75 (104)
Q Consensus 59 L~e~IeeaI~eAreiCa 75 (104)
-++++++.++.|++.|-
T Consensus 104 ~~e~~~~l~~~a~~~Cp 120 (137)
T d1uspa_ 104 SREQAEGLMHAAHEVCP 120 (137)
T ss_dssp CHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 37889999999999994
No 4
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=12.28 E-value=47 Score=21.44 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=21.7
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHHhc
Q 038225 48 KFKGTHMREKELTEMIEQKVREAKEVCQ 75 (104)
Q Consensus 48 k~~~~~pk~~~L~e~IeeaI~eAreiCa 75 (104)
+|.|.-...-++.+-|+++++.||.+|.
T Consensus 2 ~~~g~I~~~~~l~~ii~da~e~~r~l~~ 29 (190)
T d1jm6a2 2 KHIGSIDPNCSVSDVVKDAYDMAKLLCD 29 (190)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CEEeEECCCCCHHHHHHHHHHHHHHHHH
Confidence 4555554455789999999999999986
No 5
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}
Probab=11.57 E-value=73 Score=21.85 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhH
Q 038225 62 MIEQKVREAKEVCQGDETSVEYKVAWDQVEEVS 94 (104)
Q Consensus 62 ~IeeaI~eAreiCa~~~~S~ECaaAWD~VEELq 94 (104)
-++...+.|..+-.-++.-.....||+.++||=
T Consensus 232 a~~gd~~~a~~Al~~~Plv~s~~~A~~llDell 264 (278)
T d1vjta2 232 YISRDRKVLEEILIRDPRTKSYEQIVQVLDEIF 264 (278)
T ss_dssp HHHTCHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 333444556666667765556789999999976
No 6
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.40 E-value=57 Score=18.29 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=20.5
Q ss_pred ccccccCChHHHHHHHHHHHHHHHHHhc
Q 038225 48 KFKGTHMREKELTEMIEQKVREAKEVCQ 75 (104)
Q Consensus 48 k~~~~~pk~~~L~e~IeeaI~eAreiCa 75 (104)
++.|.--...++.+.|+++++.++.+|.
T Consensus 6 ~~ig~Id~~~~l~~iv~~~~~~~~~~~~ 33 (125)
T d1y8oa2 6 KHIGSIDPTCNVADVVKDAYETAKMLCE 33 (125)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4445443344688999999999999885
No 7
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=10.74 E-value=1.7e+02 Score=17.47 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 038225 63 IEQKVREAKEVCQGDETSVEYKVAWDQVE 91 (104)
Q Consensus 63 IeeaI~eAreiCa~~~~S~ECaaAWD~VE 91 (104)
+.+.+-++=.-+-.+.-++|...||+.+=
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~~AW~k~~ 130 (142)
T d1outa_ 102 LSHNILVTLAIHFPSDFTPEVHIAVDKFL 130 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHHHHHHHHH
Confidence 33444444333445567899999999653
No 8
>d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}
Probab=10.73 E-value=1.7e+02 Score=17.47 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 038225 63 IEQKVREAKEVCQGDETSVEYKVAWDQVE 91 (104)
Q Consensus 63 IeeaI~eAreiCa~~~~S~ECaaAWD~VE 91 (104)
+.+++-++=+-+-.+.-+++-..||+.+=
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~~AW~k~~ 130 (142)
T d3d1ka1 102 LNHCILVVISTMFPKEFTPEAHVSLDKFL 130 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCCCHHHHHHHHHHH
Confidence 33444444444556667799999999653
No 9
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=9.95 E-value=84 Score=18.85 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 038225 60 TEMIEQKVREAKEVCQ 75 (104)
Q Consensus 60 ~e~IeeaI~eAreiCa 75 (104)
++++++.++.|++.|-
T Consensus 110 ~e~~~~l~~~a~~~Cp 125 (142)
T d1n2fa_ 110 REAAEALVAAAHQVCP 125 (142)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5778999999999994
No 10
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.76 E-value=56 Score=18.90 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=29.2
Q ss_pred cccccCChHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHH
Q 038225 49 FKGTHMREKELTEMIEQKVREAKEVC---QGDETSVEYKVAWD 88 (104)
Q Consensus 49 ~~~~~pk~~~L~e~IeeaI~eAreiC---a~~~~S~ECaaAWD 88 (104)
|.--.|-+.+|.++|-+++++=...| .-..-|..|+.-|-
T Consensus 9 ~~~GrPls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l 51 (63)
T d1k78a1 9 FVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKIL 51 (63)
T ss_dssp CCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 33345888999999999997643333 34478899999884
Done!