BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038226
(849 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 155/322 (48%), Gaps = 29/322 (9%)
Query: 53 AIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK 112
+++G ++ +A IHYPR E W I K G + I YVFWN HE G+Y+F
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 113 GKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQ 172
G+ DI F +L +G Y+ +R GPYVCAEW GG P WL I+ R + + E ++
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 173 RFVKKIVDLMREEMLFSWQGGPIIMLQIENEYG--NMESSYGQQGKDYVKWAASMALGLG 230
F+ ++ + + + +GG II +Q+ENEYG ++ Y + +D VK A
Sbjct: 134 LFLNEVGKQLADLQIS--KGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGF------ 185
Query: 231 AGVPWVMCKQTDAPEN--------IIDACNGYYCDG----YKPNSYNKPTLWTENWDGWY 278
GVP C EN I+ G D K + P +E W GW+
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 279 TTWGGRLPHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPF-----YITSYD 333
WG + R E+L R SF + Y GGT+FG G F TSYD
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTCTSYD 304
Query: 334 YDAPIDEYGLLSEPKWGHLKDL 355
YDAPI+E G ++ PK+ +++L
Sbjct: 305 YDAPINESGKVT-PKYLEVRNL 325
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 47/221 (21%)
Query: 538 TVTIDSMRDVLRVFINGQLTGSV---IGHWVKVVQPVEFQSGYNDLILLSQTVGLQNYGA 594
T+ I D +VF+NG+ ++ G V + P+ + G + L +L + G N+G
Sbjct: 399 TLLITEAHDWAQVFLNGKKLATLSRLKGEGVVKLPPL--KEG-DRLDILVEAXGRXNFGK 455
Query: 595 FLEKDGAGFRGQVKLTGFKNGDIDLSKILWTYQVGLKGEFQQIYSIEENEAEWTDLTRDG 654
+ D G +V+L K ++L K Y + + F + ++ E +
Sbjct: 456 GI-YDWKGITEKVELQSDKG--VELVKDWQVYTIPVDYSFARDKQYKQQE------NAEN 506
Query: 655 IPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYR 714
P+ +Y++ F+ + + L+ + KG WVNGH IGRYW +
Sbjct: 507 QPA---YYRSTFNLNE-LGDTFLNXXNWSKGXVWVNGHAIGRYWEI-------------- 548
Query: 715 GAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETG 755
P QT Y VP WL+ N ++I + G
Sbjct: 549 -------------GPQQTLY-VPGCWLKKGENEIIILDXAG 575
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 154/323 (47%), Gaps = 30/323 (9%)
Query: 45 FNVSYDHRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHES 104
F + Y + + DG IS IHY R W D + K K G + I+TYV WN HE
Sbjct: 9 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEP 68
Query: 105 IRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNN 164
GQY F +D+ F++L GL + LR GPY+CAEW GG P WL + I R+++
Sbjct: 69 WPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSD 128
Query: 165 APFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAAS 224
+ + +++ ++ M+ L GGP+I +Q+ENEYG SY DY+++
Sbjct: 129 PDYLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQK 182
Query: 225 -----------MALGLGAGVPWVMCKQTDAPENIIDACNGY-YCDGY---KPNSYNKPTL 269
+ GA ++ C +D G D + + P +
Sbjct: 183 RFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 270 WTENWDGWYTTWGGRLPHRPV--EDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGG-- 325
+E + GW WG PH + E +A ++ RG S +N YM+ GGTNF +G
Sbjct: 243 NSEFYTGWLDHWGQ--PHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANS 299
Query: 326 PFYI--TSYDYDAPIDEYGLLSE 346
P+ TSYDYDAP+ E G L+E
Sbjct: 300 PYAAQPTSYDYDAPLSEAGDLTE 322
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 580 LILLSQTVGLQNYGAFLEKDGAGFRGQV-KLTGFKNGDIDLSKILWTYQVGLK---GEFQ 635
L LL + +G NYGA++ F+G V LT N D + + ++ G +
Sbjct: 450 LDLLVENMGRVNYGAYIND----FKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWG 505
Query: 636 QIYSIEENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALD----LGSMGKGQAWVNG 691
S +EA + + +P+ +Y F P GI + D KGQ W+NG
Sbjct: 506 HRDSGHHDEAWAHNSSNYTLPA---FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWING 562
Query: 692 HHIGRYWTVVAPK 704
++GRYW P+
Sbjct: 563 FNLGRYWPARGPQ 575
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 35/312 (11%)
Query: 56 IDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKN 115
+DG ++S IHY R PE W + K G + +ETYV WN HE G+++F+G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 116 DIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFV 175
D+ KF+++ GLY +R P++CAEW FGG P WL + R+++ + E + R+
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130
Query: 176 KKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGLGAGV-- 233
+++ + +L + GG I+M+Q+ENEYG SYG+ K Y++ + G
Sbjct: 131 DQLLPRLVPRLLDN--GGNILMMQVENEYG----SYGED-KAYLRAIRQLMEECGVTCPL 183
Query: 234 -----PW--VMCKQTDAPENIIDACN---------GYYCDGYKPNSYNKPTLWTENWDGW 277
PW + T E++ N + + + P + E WDGW
Sbjct: 184 FTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGW 243
Query: 278 YTTWGGRLPHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFY-------IT 330
+ W + R ++LA AV ++G +N YM+ GGTNFG +G +T
Sbjct: 244 FNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLPQVT 301
Query: 331 SYDYDAPIDEYG 342
SYDYDA +DE G
Sbjct: 302 SYDYDALLDEEG 313
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 68/250 (27%)
Query: 530 WKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQPVEF---------QSGYNDL 580
W E R + I RD +++++GQ WVK E + G + L
Sbjct: 394 WDAEEER--LRIIDGRDRAQLYVDGQ--------WVKTQYQTEIGEDIFYQGKKKGLSRL 443
Query: 581 ILLSQTVGLQNYGAFLEKDGAGFRGQVKLTGFKNGDI-DLSKIL-WTYQVGLKGEFQQIY 638
+L + +G NYG F + G + G DL +L W + Y
Sbjct: 444 DILIENMGRVNYGH-------KFLADTQRKGIRTGVCKDLHFLLNWKH-----------Y 485
Query: 639 SIEENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW 698
+ + E D ++ +Y F + D LDL GKG A+VNG ++GR+W
Sbjct: 486 PLPLDNPEKIDFSKGWTQGQPAFYAYDFTVEEPKD-TYLDLSEFGKGVAFVNGQNLGRFW 544
Query: 699 TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNP 758
V PT + Y +P S+L+ N ++IFE G
Sbjct: 545 NV---------------------------GPTLSLY-IPHSYLKEGANRIIIFETEGQYK 576
Query: 759 FEISVKLRST 768
EI + + T
Sbjct: 577 EEIHLTRKPT 586
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 181/429 (42%), Gaps = 60/429 (13%)
Query: 47 VSYDHRAIIIDGNRRMLISAGIH-YPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESI 105
V++D +I ++G R M+ S +H Y ++ D+ K K G + + YV W E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 106 RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNA 165
G Y+ +G D+ F +G+YL R GPY+ AE + GGFP WL+ + GI RT++
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 166 PFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEY--------GNMESSYGQQGKD 217
+ + + I + + + + GGPII+ Q ENEY G + SY Q +D
Sbjct: 125 AYLKATDNYASNIAATIAKAQITN--GGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 218 YVK-------------WAASM-ALGLGAGVPWVMCKQTDAPENIIDACN----------G 253
+ + WAA A G GAG V D+ D N
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGA--VDIYGHDSYPLGFDCANPSTWPSGNLPT 240
Query: 254 YYCDGYKPNSYNKPTLWTENWDGWYTTWGGRLPHRPVEDLAFAVARFFQR-----GGSFM 308
Y+ ++ S + P E G + WGG + L R F + G +F+
Sbjct: 241 YFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFL 300
Query: 309 NYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPALVA 368
N YM FGGTN+G G P TSYDY + I E ++ K+ LK L K+ LVA
Sbjct: 301 NLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVA 359
Query: 369 -------------ADSAQYIKLGQNQEAH---VYRANRYGSQSNCSAFLANIDEHTAASV 412
AD LG N A V R + Y SQ++ L ++
Sbjct: 360 NPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTI 419
Query: 413 TFLGQSYTL 421
LG S TL
Sbjct: 420 PQLGGSLTL 428
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 153/361 (42%), Gaps = 46/361 (12%)
Query: 47 VSYDHRAIIIDGNRRMLISAGIHYPR-ATPEMWPDLIAKSKEGGADVIETYVFWNAHESI 105
V++D ++ + G R ++ S +H R P ++ D+ K K G + + YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 106 RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNA 165
G++ G + F + +G+YL R GPY+ AE + GGFP WL+ + G + RT+
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 166 PFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASM 225
+ +V I ++ + + + GGP+I+ Q ENEY K Y+++
Sbjct: 145 DYLHATDNYVAHIASIIAKAQITN--GGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 226 ALGLGAGVPWV----MCKQTDAPENIIDACNGYYCDGYKPNSYN--KPTLWTENWDGWYT 279
A G VP + T AP + + + Y DGY P ++ P+ W +N G T
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGY-PLGFDCAHPSAWPDN--GLPT 259
Query: 280 TWG----GRLPHRPVEDLAFAVARF------------------FQR---------GGSFM 308
TW P P + F F F+R G +
Sbjct: 260 TWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIF 319
Query: 309 NYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPALVA 368
N YM FGGTN+G G P TSYDY A I E + K+ LK L P +
Sbjct: 320 NIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELK-LQGQFLKVSPGYIT 377
Query: 369 A 369
A
Sbjct: 378 A 378
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 24/136 (17%)
Query: 94 ETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153
E + W+A E RGQ+ F G + +V F + S+G ++ G VW
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNFAQ---SNGKLIR-------------GHTLVWHS 90
Query: 154 DIPG-IEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESS-- 210
+PG + T+ ++ + ++ + + +++W ++ +I NE G++ +S
Sbjct: 91 QLPGWVSSITDKNTLISVLKNHITTVMTRYKGK-IYAWD----VLNEIFNEDGSLRNSVF 145
Query: 211 YGQQGKDYVKWAASMA 226
Y G+DYV+ A A
Sbjct: 146 YNVIGEDYVRIAFETA 161
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 44 PFNVSYDHR-AIIIDGNRRMLISAGIH----YPRATPEMWPDLIAKSKEGGADVIETYVF 98
P V+ D R A+ +DG + ++A ++ +P ++WP + ++ GA+ ++ +
Sbjct: 40 PQLVTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAI----EKVGANTVQVPIA 95
Query: 99 WNAHESIRGQYNF 111
W E + GQ++F
Sbjct: 96 WEQIEPVEGQFDF 108
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 53/234 (22%)
Query: 424 WSVSILPDCRNTVFNTAKVSSQTSIKTVEFSLPLS------------PNISVPQQS---- 467
+++S + + ++ + + S+ I SLPL PNI P+ +
Sbjct: 280 YTISGNDNGQGSITQKSGIPSEIKITLANMSLPLKEKDKVHNPRYDGPNIYSPRLNNGET 339
Query: 468 --MIESKLSSTSKSWMTVKEPIGVWSENNFTVQGILEHLNVTKDYSDYLWHITQIYVSDD 525
++ K S + + G++ E NFTV S+ W I+VS++
Sbjct: 340 LYFMDQKQGSLIFASDINQGAGGLYFEGNFTVS----------PNSNQTWQGAGIHVSEN 389
Query: 526 DISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQPVEFQSGYNDLILLSQ 585
WK N V + L V G+ GS+ G +IL Q
Sbjct: 390 STVTWKVNGVEHDRLSKIGKGTLHVQAKGENKGSI-------------SVGDGKVILEQQ 436
Query: 586 TVGLQNYGAFLEKDGAGFRGQVKLT------------GFKNGDIDLSKILWTYQ 627
N AF E RG V+L GF+ G +DL+ T++
Sbjct: 437 ADDQGNKQAFSEIGLVSGRGTVQLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFK 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,417,816
Number of Sequences: 62578
Number of extensions: 1322132
Number of successful extensions: 3135
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3105
Number of HSP's gapped (non-prelim): 19
length of query: 849
length of database: 14,973,337
effective HSP length: 107
effective length of query: 742
effective length of database: 8,277,491
effective search space: 6141898322
effective search space used: 6141898322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)