Query 038226
Match_columns 849
No_of_seqs 297 out of 1504
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-227 5E-232 1971.4 69.6 770 46-849 29-804 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-174 5E-179 1471.5 42.0 625 44-778 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 4E-89 8.6E-94 747.5 19.9 297 53-358 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6.4E-35 1.4E-39 340.9 10.3 292 47-347 1-335 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 4.1E-20 9E-25 207.4 15.2 263 68-360 2-372 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 1E-10 2.2E-15 127.6 19.1 193 47-280 1-213 (298)
7 PRK10150 beta-D-glucuronidase; 99.1 1.1E-08 2.4E-13 122.3 24.4 159 45-238 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 98.8 8E-08 1.7E-12 120.9 18.1 187 45-274 318-514 (1021)
9 COG3250 LacZ Beta-galactosidas 98.8 8.1E-08 1.8E-12 117.0 17.5 134 45-225 284-423 (808)
10 PF00150 Cellulase: Cellulase 98.8 7E-08 1.5E-12 102.8 15.0 161 57-239 4-172 (281)
11 PF13364 BetaGal_dom4_5: Beta- 98.8 1E-08 2.2E-13 96.8 6.6 66 657-751 34-104 (111)
12 PRK09525 lacZ beta-D-galactosi 98.8 1.3E-07 2.9E-12 118.8 18.0 149 45-238 334-488 (1027)
13 PF13364 BetaGal_dom4_5: Beta- 98.6 2.5E-07 5.5E-12 87.3 11.0 83 499-589 22-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.2 4.2E-06 9.1E-11 83.3 8.9 97 508-610 64-164 (167)
15 smart00633 Glyco_10 Glycosyl h 98.0 1.9E-05 4E-10 84.8 8.7 116 99-239 3-125 (254)
16 PF03198 Glyco_hydro_72: Gluca 97.9 0.00018 4E-09 78.7 13.7 153 45-235 9-179 (314)
17 TIGR03356 BGL beta-galactosida 97.7 6.9E-05 1.5E-09 86.5 7.7 97 76-184 54-151 (427)
18 PLN02705 beta-amylase 97.7 0.00013 2.7E-09 85.1 9.0 112 75-200 267-414 (681)
19 PLN02905 beta-amylase 97.7 0.00015 3.2E-09 84.8 9.5 111 76-200 286-432 (702)
20 PLN02161 beta-amylase 97.7 0.00018 3.8E-09 82.8 9.9 80 75-160 116-207 (531)
21 PLN02801 beta-amylase 97.6 0.00017 3.7E-09 83.0 9.1 80 74-159 35-126 (517)
22 PF13204 DUF4038: Protein of u 97.6 0.0016 3.5E-08 71.5 16.4 224 51-305 2-274 (289)
23 PLN02803 beta-amylase 97.6 0.00022 4.9E-09 82.3 9.5 80 75-160 106-197 (548)
24 PLN00197 beta-amylase; Provisi 97.6 0.00024 5.2E-09 82.3 9.2 81 74-160 125-217 (573)
25 PF01373 Glyco_hydro_14: Glyco 97.1 0.00069 1.5E-08 76.7 6.3 112 77-200 17-152 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.0 0.00092 2E-08 74.4 5.9 156 63-240 11-179 (320)
27 PF02837 Glyco_hydro_2_N: Glyc 97.0 0.001 2.3E-08 66.2 5.7 67 656-751 66-136 (167)
28 PRK10150 beta-D-glucuronidase; 96.8 0.0066 1.4E-07 73.1 10.8 98 509-612 62-179 (604)
29 COG3693 XynA Beta-1,4-xylanase 96.7 0.012 2.6E-07 64.8 11.5 133 85-240 55-194 (345)
30 PF00232 Glyco_hydro_1: Glycos 96.7 0.0014 3E-08 76.4 4.5 97 76-184 58-156 (455)
31 PF07745 Glyco_hydro_53: Glyco 96.7 0.0067 1.4E-07 67.9 9.2 143 79-239 27-177 (332)
32 PRK10340 ebgA cryptic beta-D-g 96.6 0.0055 1.2E-07 78.0 9.5 92 512-612 109-206 (1021)
33 PF02140 Gal_Lectin: Galactose 96.6 0.00094 2E-08 59.2 1.8 41 807-848 1-45 (80)
34 COG3867 Arabinogalactan endo-1 96.6 0.019 4.2E-07 62.3 11.5 117 79-213 66-191 (403)
35 PRK09525 lacZ beta-D-galactosi 96.3 0.01 2.2E-07 75.5 9.3 93 511-612 119-218 (1027)
36 PRK15014 6-phospho-beta-glucos 96.2 0.01 2.3E-07 69.6 7.9 97 76-184 69-168 (477)
37 COG2730 BglC Endoglucanase [Ca 96.2 0.014 3.1E-07 67.1 8.7 119 74-206 66-193 (407)
38 PRK09852 cryptic 6-phospho-bet 96.2 0.011 2.3E-07 69.4 7.6 97 76-184 71-170 (474)
39 PLN02849 beta-glucosidase 96.0 0.025 5.5E-07 66.8 9.6 100 76-183 79-180 (503)
40 PRK13511 6-phospho-beta-galact 95.8 0.023 5E-07 66.6 8.0 95 76-182 54-149 (469)
41 TIGR01233 lacG 6-phospho-beta- 95.7 0.029 6.2E-07 65.8 8.2 96 76-183 53-149 (467)
42 PF14488 DUF4434: Domain of un 95.6 0.14 3E-06 52.0 11.8 134 71-235 15-157 (166)
43 PLN02998 beta-glucosidase 95.4 0.015 3.2E-07 68.7 4.7 100 76-183 82-183 (497)
44 PRK09593 arb 6-phospho-beta-gl 95.4 0.018 4E-07 67.6 5.5 100 76-183 73-175 (478)
45 PF02055 Glyco_hydro_30: O-Gly 95.3 0.16 3.5E-06 60.0 12.7 334 59-426 74-490 (496)
46 PLN02814 beta-glucosidase 95.3 0.017 3.8E-07 68.2 4.5 96 76-183 77-174 (504)
47 PRK09589 celA 6-phospho-beta-g 95.2 0.021 4.5E-07 67.1 4.9 100 76-183 67-169 (476)
48 PF14871 GHL6: Hypothetical gl 94.6 0.16 3.4E-06 49.8 8.6 99 80-183 4-124 (132)
49 COG2723 BglB Beta-glucosidase/ 93.2 0.12 2.6E-06 59.9 5.5 96 76-183 59-157 (460)
50 smart00812 Alpha_L_fucos Alpha 93.1 11 0.00023 43.5 21.0 246 70-368 78-339 (384)
51 TIGR00542 hxl6Piso_put hexulos 91.7 2.9 6.3E-05 45.3 13.6 127 75-233 15-149 (279)
52 TIGR01515 branching_enzym alph 90.6 3 6.6E-05 50.8 13.6 69 67-135 143-226 (613)
53 KOG2230 Predicted beta-mannosi 89.8 2.5 5.5E-05 49.9 11.2 187 52-281 328-547 (867)
54 COG3934 Endo-beta-mannanase [C 89.4 0.26 5.6E-06 57.0 3.0 157 53-227 3-168 (587)
55 PF02638 DUF187: Glycosyl hydr 89.3 1.5 3.3E-05 48.8 9.0 119 74-202 17-162 (311)
56 PRK05402 glycogen branching en 87.9 4.5 9.8E-05 50.3 12.6 53 83-135 273-335 (726)
57 smart00642 Aamy Alpha-amylase 87.9 1.2 2.7E-05 45.0 6.5 64 78-141 21-96 (166)
58 PRK13210 putative L-xylulose 5 87.9 8.5 0.00018 41.4 13.4 130 77-233 17-149 (284)
59 PRK14706 glycogen branching en 87.5 8.8 0.00019 47.1 14.5 51 82-135 174-237 (639)
60 PRK09936 hypothetical protein; 85.6 1.6 3.5E-05 48.0 6.2 57 72-134 34-91 (296)
61 PF01261 AP_endonuc_2: Xylose 83.2 3.1 6.6E-05 42.0 6.7 124 82-233 1-128 (213)
62 PF13200 DUF4015: Putative gly 82.9 4.1 8.9E-05 45.7 8.0 111 74-185 11-136 (316)
63 PRK09441 cytoplasmic alpha-amy 82.9 1.7 3.8E-05 51.1 5.5 61 75-135 18-101 (479)
64 cd00019 AP2Ec AP endonuclease 81.8 12 0.00027 40.3 11.2 97 76-201 10-107 (279)
65 PF01229 Glyco_hydro_39: Glyco 81.8 5.7 0.00012 47.0 9.2 122 66-206 29-167 (486)
66 PF08531 Bac_rhamnosid_N: Alph 81.6 4.3 9.3E-05 41.3 7.1 52 537-589 6-68 (172)
67 PRK12568 glycogen branching en 81.2 21 0.00045 44.5 13.9 54 81-137 275-341 (730)
68 PRK14705 glycogen branching en 81.2 22 0.00047 46.8 14.6 52 81-135 771-835 (1224)
69 PRK13209 L-xylulose 5-phosphat 81.1 14 0.00029 40.0 11.2 125 77-233 22-154 (283)
70 PLN02447 1,4-alpha-glucan-bran 80.8 27 0.00057 43.8 14.6 59 76-137 251-322 (758)
71 TIGR02631 xylA_Arthro xylose i 80.7 28 0.00061 40.1 14.0 141 74-237 30-178 (382)
72 TIGR01531 glyc_debranch glycog 78.9 7.1 0.00015 51.3 9.1 113 53-171 104-236 (1464)
73 KOG0496 Beta-galactosidase [Ca 78.9 0.62 1.3E-05 55.9 -0.1 41 808-848 331-371 (649)
74 PF14307 Glyco_tran_WbsX: Glyc 78.6 23 0.00051 40.0 12.4 141 73-240 55-198 (345)
75 TIGR03234 OH-pyruv-isom hydrox 77.3 42 0.00091 35.7 13.3 43 77-133 15-57 (254)
76 PF05913 DUF871: Bacterial pro 77.1 3.6 7.7E-05 46.9 5.3 70 64-139 2-71 (357)
77 PF13199 Glyco_hydro_66: Glyco 76.7 38 0.00081 41.1 13.8 159 75-239 117-308 (559)
78 PRK09856 fructoselysine 3-epim 76.5 37 0.00079 36.4 12.7 130 77-233 14-145 (275)
79 PF00128 Alpha-amylase: Alpha 76.4 2.8 6.1E-05 44.8 4.1 56 80-135 8-72 (316)
80 PRK09997 hydroxypyruvate isome 74.8 43 0.00094 35.8 12.7 50 67-133 9-58 (258)
81 PF02679 ComA: (2R)-phospho-3- 74.8 5.7 0.00012 43.0 5.8 52 75-136 83-134 (244)
82 PRK01060 endonuclease IV; Prov 73.4 23 0.0005 38.2 10.2 94 78-199 14-109 (281)
83 COG1649 Uncharacterized protei 73.0 17 0.00037 42.3 9.4 122 74-205 62-210 (418)
84 cd06595 GH31_xylosidase_XylS-l 72.3 30 0.00065 38.2 10.9 64 74-137 23-96 (292)
85 PF14683 CBM-like: Polysacchar 71.9 3.9 8.4E-05 41.7 3.6 81 662-755 65-153 (167)
86 cd06593 GH31_xylosidase_YicI Y 71.1 8.1 0.00018 42.7 6.2 67 74-140 22-91 (308)
87 TIGR02402 trehalose_TreZ malto 69.5 7.7 0.00017 46.7 5.9 52 81-135 116-180 (542)
88 PRK09989 hypothetical protein; 69.3 48 0.001 35.5 11.5 43 77-133 16-58 (258)
89 TIGR03849 arch_ComA phosphosul 68.5 16 0.00035 39.4 7.5 52 76-137 71-122 (237)
90 PRK12313 glycogen branching en 67.2 9.7 0.00021 46.6 6.2 52 81-135 176-240 (633)
91 cd06600 GH31_MGAM-like This fa 66.9 41 0.00089 37.6 10.6 71 68-139 13-88 (317)
92 PF01791 DeoC: DeoC/LacD famil 66.8 3.1 6.8E-05 44.2 1.7 53 79-134 79-131 (236)
93 PRK13398 3-deoxy-7-phosphohept 66.0 19 0.0004 39.5 7.5 80 46-135 15-98 (266)
94 cd06592 GH31_glucosidase_KIAA1 65.6 32 0.00069 38.2 9.4 69 71-142 25-97 (303)
95 PLN02960 alpha-amylase 64.5 12 0.00027 47.1 6.4 54 79-135 420-486 (897)
96 PF02065 Melibiase: Melibiase; 64.4 40 0.00087 39.1 10.2 90 68-157 50-148 (394)
97 TIGR00677 fadh2_euk methylenet 64.3 21 0.00046 39.3 7.6 109 62-184 130-251 (281)
98 COG3623 SgaU Putative L-xylulo 64.1 79 0.0017 34.3 11.2 123 76-231 18-149 (287)
99 PF03659 Glyco_hydro_71: Glyco 63.7 27 0.00059 40.3 8.6 53 74-135 15-67 (386)
100 cd04908 ACT_Bt0572_1 N-termina 63.5 23 0.00049 29.8 6.1 55 75-133 12-66 (66)
101 COG0296 GlgB 1,4-alpha-glucan 61.4 13 0.00028 45.4 5.7 58 74-134 163-233 (628)
102 PRK10785 maltodextrin glucosid 61.3 15 0.00032 44.8 6.2 56 80-135 183-246 (598)
103 PRK09505 malS alpha-amylase; R 61.3 15 0.00032 45.5 6.3 58 78-135 232-312 (683)
104 PRK14582 pgaB outer membrane N 61.1 39 0.00085 41.8 9.7 110 76-203 334-467 (671)
105 PF08308 PEGA: PEGA domain; I 60.8 12 0.00026 32.1 3.9 39 538-582 3-41 (71)
106 PF06832 BiPBP_C: Penicillin-B 60.7 13 0.00027 33.5 4.2 49 537-589 34-83 (89)
107 TIGR02403 trehalose_treC alpha 60.4 12 0.00027 44.9 5.4 57 77-135 28-95 (543)
108 TIGR02104 pulA_typeI pullulana 60.3 15 0.00032 44.8 6.0 55 80-135 168-249 (605)
109 PLN03059 beta-galactosidase; P 59.8 37 0.00081 42.8 9.3 42 657-698 469-517 (840)
110 cd06602 GH31_MGAM_SI_GAA This 57.7 75 0.0016 35.9 10.7 74 68-142 13-93 (339)
111 smart00518 AP2Ec AP endonuclea 57.0 86 0.0019 33.6 10.7 92 78-199 12-104 (273)
112 PRK10933 trehalose-6-phosphate 57.0 20 0.00043 43.3 6.3 55 78-135 35-101 (551)
113 TIGR02456 treS_nterm trehalose 56.9 20 0.00044 43.0 6.3 59 76-134 28-95 (539)
114 cd06589 GH31 The enzymes of gl 56.3 32 0.00069 37.3 7.2 65 74-139 22-90 (265)
115 PF11324 DUF3126: Protein of u 56.0 33 0.00072 29.6 5.6 29 543-571 25-59 (63)
116 PRK12677 xylose isomerase; Pro 55.2 3.1E+02 0.0067 31.7 15.3 89 77-183 32-124 (384)
117 KOG1412 Aspartate aminotransfe 53.8 43 0.00093 37.7 7.5 119 74-240 131-250 (410)
118 TIGR02100 glgX_debranch glycog 52.5 69 0.0015 39.8 10.0 54 82-135 190-265 (688)
119 PF01261 AP_endonuc_2: Xylose 51.2 1.2E+02 0.0026 30.4 10.0 104 76-207 27-137 (213)
120 cd06591 GH31_xylosidase_XylS X 50.9 27 0.00058 39.0 5.7 65 74-139 22-90 (319)
121 COG1306 Uncharacterized conser 50.5 33 0.00071 38.2 6.0 59 74-135 75-144 (400)
122 PLN02361 alpha-amylase 50.3 32 0.00068 40.0 6.2 60 76-135 26-96 (401)
123 PF14587 Glyco_hydr_30_2: O-Gl 49.8 1.2E+02 0.0026 35.1 10.6 120 104-239 93-226 (384)
124 PRK08673 3-deoxy-7-phosphohept 49.3 42 0.00092 38.1 6.9 81 46-135 81-164 (335)
125 cd06603 GH31_GANC_GANAB_alpha 49.3 31 0.00066 38.9 5.9 73 68-141 13-90 (339)
126 cd06598 GH31_transferase_CtsZ 48.7 34 0.00074 38.2 6.1 67 74-140 22-95 (317)
127 PRK14510 putative bifunctional 48.1 25 0.00053 46.5 5.5 56 80-135 191-267 (1221)
128 TIGR02401 trehalose_TreY malto 47.1 37 0.00079 42.9 6.5 64 74-137 14-87 (825)
129 cd06601 GH31_lyase_GLase GLase 46.5 97 0.0021 35.1 9.2 72 68-140 13-89 (332)
130 KOG0626 Beta-glucosidase, lact 45.9 39 0.00085 40.3 6.2 113 77-199 92-208 (524)
131 cd06599 GH31_glycosidase_Aec37 44.9 47 0.001 37.1 6.5 66 75-140 28-98 (317)
132 COG5520 O-Glycosyl hydrolase [ 44.8 5.5E+02 0.012 29.7 16.3 116 87-230 77-206 (433)
133 cd06568 GH20_SpHex_like A subg 44.1 73 0.0016 35.9 7.8 72 51-135 3-95 (329)
134 KOG2024 Beta-Glucuronidase GUS 43.5 35 0.00075 37.4 4.8 60 508-570 84-143 (297)
135 COG1735 Php Predicted metal-de 43.2 1E+02 0.0022 34.6 8.4 152 46-240 17-173 (316)
136 COG3589 Uncharacterized conser 42.6 55 0.0012 37.1 6.3 72 64-142 4-76 (360)
137 PRK14511 maltooligosyl trehalo 41.9 49 0.0011 42.1 6.5 64 74-137 18-91 (879)
138 PRK00042 tpiA triosephosphate 41.7 46 0.001 36.2 5.5 49 82-136 79-127 (250)
139 cd06545 GH18_3CO4_chitinase Th 41.6 1.1E+02 0.0023 32.9 8.4 74 106-205 36-110 (253)
140 PRK14507 putative bifunctional 41.3 47 0.001 45.1 6.5 60 74-137 756-829 (1693)
141 PF12876 Cellulase-like: Sugar 40.7 50 0.0011 29.7 4.8 47 191-237 7-62 (88)
142 PRK09875 putative hydrolase; P 40.4 2.2E+02 0.0048 31.7 10.7 89 46-154 7-95 (292)
143 PRK08645 bifunctional homocyst 40.0 86 0.0019 38.4 8.1 111 57-183 459-578 (612)
144 cd06604 GH31_glucosidase_II_Ma 39.9 52 0.0011 37.0 5.9 72 68-140 13-89 (339)
145 TIGR00676 fadh2 5,10-methylene 39.5 1E+02 0.0022 33.7 7.9 110 61-184 125-247 (272)
146 PRK09432 metF 5,10-methylenete 39.3 69 0.0015 35.6 6.6 88 81-184 168-266 (296)
147 PLN00196 alpha-amylase; Provis 39.1 61 0.0013 38.0 6.4 57 79-135 47-112 (428)
148 TIGR02102 pullulan_Gpos pullul 38.9 52 0.0011 43.0 6.2 21 115-135 555-575 (1111)
149 cd00311 TIM Triosephosphate is 38.8 57 0.0012 35.3 5.7 49 82-136 77-125 (242)
150 smart00481 POLIIIAc DNA polyme 38.5 91 0.002 26.2 5.8 44 77-133 16-59 (67)
151 PRK03705 glycogen debranching 37.7 51 0.0011 40.8 5.7 55 81-135 184-262 (658)
152 cd02742 GH20_hexosaminidase Be 37.7 1.2E+02 0.0026 33.7 8.1 59 74-135 14-92 (303)
153 PF01055 Glyco_hydro_31: Glyco 37.0 68 0.0015 37.2 6.4 70 74-144 41-112 (441)
154 PRK09267 flavodoxin FldA; Vali 35.8 1.8E+02 0.0038 29.0 8.4 74 56-132 44-117 (169)
155 cd06547 GH85_ENGase Endo-beta- 35.7 53 0.0011 37.3 5.0 115 91-236 31-147 (339)
156 cd06565 GH20_GcnA-like Glycosy 35.6 1.8E+02 0.004 32.2 9.2 67 74-143 15-88 (301)
157 cd06597 GH31_transferase_CtsY 35.4 76 0.0017 35.9 6.3 73 68-140 13-110 (340)
158 PF02228 Gag_p19: Major core p 35.3 18 0.0004 32.4 1.0 38 74-128 20-57 (92)
159 PRK12858 tagatose 1,6-diphosph 34.8 50 0.0011 37.6 4.6 64 68-135 99-163 (340)
160 PF07755 DUF1611: Protein of u 34.8 26 0.00056 39.1 2.4 61 60-135 34-95 (301)
161 TIGR00433 bioB biotin syntheta 34.8 59 0.0013 35.4 5.1 52 79-133 123-176 (296)
162 KOG3833 Uncharacterized conser 34.7 38 0.00083 37.9 3.5 54 76-135 443-499 (505)
163 cd06416 GH25_Lys1-like Lys-1 i 33.2 80 0.0017 32.5 5.6 88 65-155 55-157 (196)
164 TIGR00419 tim triosephosphate 32.9 82 0.0018 33.3 5.6 44 82-135 74-117 (205)
165 PF08531 Bac_rhamnosid_N: Alph 32.3 64 0.0014 32.8 4.6 22 676-697 7-28 (172)
166 PF14701 hDGE_amylase: glucano 32.3 1.7E+02 0.0038 34.3 8.5 97 69-171 13-128 (423)
167 PRK12331 oxaloacetate decarbox 32.1 94 0.002 36.7 6.4 56 68-135 88-143 (448)
168 PF03422 CBM_6: Carbohydrate b 31.9 2.7E+02 0.0058 26.0 8.5 42 546-587 60-111 (125)
169 COG1874 LacA Beta-galactosidas 30.6 47 0.001 41.1 3.8 53 675-755 540-592 (673)
170 PRK12595 bifunctional 3-deoxy- 30.4 5E+02 0.011 29.9 11.7 82 45-135 105-189 (360)
171 cd06418 GH25_BacA-like BacA is 30.4 1.8E+02 0.0039 30.8 7.7 90 74-185 50-140 (212)
172 PRK13209 L-xylulose 5-phosphat 29.9 2.6E+02 0.0056 30.1 9.1 104 72-205 53-161 (283)
173 PRK15492 triosephosphate isome 29.8 97 0.0021 33.9 5.7 49 82-136 87-135 (260)
174 COG2884 FtsE Predicted ATPase 29.2 43 0.00092 35.4 2.6 16 683-698 55-70 (223)
175 PF12733 Cadherin-like: Cadher 29.0 1.3E+02 0.0028 26.6 5.5 43 538-585 28-71 (88)
176 PLN02429 triosephosphate isome 29.0 98 0.0021 34.9 5.6 49 82-136 140-188 (315)
177 cd00537 MTHFR Methylenetetrahy 28.9 1.5E+02 0.0033 32.1 7.1 89 81-184 152-250 (274)
178 PRK14565 triosephosphate isome 28.8 1E+02 0.0022 33.3 5.6 49 82-136 78-126 (237)
179 PRK14567 triosephosphate isome 28.8 1E+02 0.0023 33.6 5.7 48 83-136 79-126 (253)
180 cd06563 GH20_chitobiase-like T 28.8 2.4E+02 0.0053 32.0 8.9 59 74-135 16-106 (357)
181 PLN02561 triosephosphate isome 28.4 1E+02 0.0023 33.6 5.6 49 82-136 81-129 (253)
182 PRK09856 fructoselysine 3-epim 28.4 65 0.0014 34.5 4.1 56 76-135 90-149 (275)
183 TIGR02103 pullul_strch alpha-1 28.2 96 0.0021 39.8 6.0 21 115-135 404-424 (898)
184 PTZ00333 triosephosphate isome 27.9 1.1E+02 0.0024 33.4 5.7 48 83-136 83-130 (255)
185 PRK10966 exonuclease subunit S 27.9 3.9E+02 0.0084 31.2 10.5 64 60-135 41-108 (407)
186 cd06564 GH20_DspB_LnbB-like Gl 27.3 1.5E+02 0.0032 33.3 6.7 139 74-232 15-195 (326)
187 KOG0622 Ornithine decarboxylas 27.1 89 0.0019 36.4 4.9 66 74-149 191-257 (448)
188 PF04914 DltD_C: DltD C-termin 26.7 50 0.0011 32.4 2.6 58 115-196 36-93 (130)
189 PRK06703 flavodoxin; Provision 26.4 2.5E+02 0.0055 27.4 7.5 103 56-183 46-148 (151)
190 COG1523 PulA Type II secretory 26.2 99 0.0022 38.5 5.5 55 81-135 205-285 (697)
191 PLN02877 alpha-amylase/limit d 26.2 1.2E+02 0.0025 39.3 6.2 20 116-135 467-486 (970)
192 TIGR02455 TreS_stutzeri trehal 26.2 1.5E+02 0.0033 36.6 6.9 76 74-153 76-176 (688)
193 cd01299 Met_dep_hydrolase_A Me 25.7 1.2E+02 0.0026 33.5 5.7 58 74-134 118-179 (342)
194 PF11008 DUF2846: Protein of u 25.6 1.1E+02 0.0025 28.9 4.7 35 545-582 40-74 (117)
195 PRK14566 triosephosphate isome 25.5 1.3E+02 0.0027 33.1 5.6 49 82-136 88-136 (260)
196 TIGR00587 nfo apurinic endonuc 25.4 3.2E+02 0.007 29.7 8.8 83 79-183 14-98 (274)
197 PRK14040 oxaloacetate decarbox 25.2 1.1E+02 0.0023 37.6 5.5 53 68-132 89-141 (593)
198 COG0149 TpiA Triosephosphate i 25.1 1.3E+02 0.0028 32.9 5.5 49 82-136 81-129 (251)
199 cd08560 GDPD_EcGlpQ_like_1 Gly 24.9 2.2E+02 0.0047 32.7 7.6 53 77-135 246-298 (356)
200 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.6 1.5E+02 0.0033 32.4 6.1 49 73-133 88-136 (275)
201 PF08924 DUF1906: Domain of un 24.2 1.5E+02 0.0032 29.2 5.3 92 74-185 36-128 (136)
202 PF00728 Glyco_hydro_20: Glyco 24.1 80 0.0017 35.2 3.9 59 74-135 16-93 (351)
203 cd03789 GT1_LPS_heptosyltransf 23.9 99 0.0021 33.3 4.5 80 59-141 122-213 (279)
204 KOG4729 Galactoside-binding le 23.8 59 0.0013 35.5 2.6 46 802-849 43-94 (265)
205 TIGR01361 DAHP_synth_Bsub phos 23.8 1.3E+02 0.0028 32.8 5.4 81 46-135 13-96 (260)
206 PRK04989 psbM photosystem II r 23.3 1E+02 0.0022 23.7 3.0 27 6-32 4-30 (35)
207 PF08306 Glyco_hydro_98M: Glyc 23.3 58 0.0013 36.6 2.5 90 62-176 104-201 (324)
208 PF01120 Alpha_L_fucos: Alpha- 23.2 1.1E+03 0.024 26.6 20.1 53 286-364 289-342 (346)
209 PRK10658 putative alpha-glucos 23.1 1.8E+02 0.0038 36.2 6.9 66 75-141 282-351 (665)
210 PF01075 Glyco_transf_9: Glyco 23.0 67 0.0015 33.6 2.9 75 60-137 107-194 (247)
211 COG0366 AmyA Glycosidases [Car 22.9 1E+02 0.0022 35.8 4.6 56 80-135 33-97 (505)
212 KOG0805 Carbon-nitrogen hydrol 22.8 2.2E+02 0.0049 31.1 6.6 78 116-203 38-122 (337)
213 KOG3625 Alpha amylase [Carbohy 22.8 69 0.0015 40.6 3.2 76 74-158 140-235 (1521)
214 PRK13210 putative L-xylulose 5 22.5 1.1E+02 0.0023 32.9 4.4 59 76-135 94-153 (284)
215 PLN02389 biotin synthase 22.1 1.2E+02 0.0025 35.1 4.8 50 79-131 178-229 (379)
216 PF00121 TIM: Triosephosphate 21.7 64 0.0014 34.9 2.5 49 82-136 77-125 (244)
217 cd04882 ACT_Bt0572_2 C-termina 21.7 1.7E+02 0.0037 23.7 4.5 55 75-131 10-64 (65)
218 PLN02784 alpha-amylase 21.5 1.8E+02 0.0039 37.2 6.4 56 80-135 525-588 (894)
219 cd07944 DRE_TIM_HOA_like 4-hyd 21.3 1.4E+02 0.003 32.6 5.0 45 79-135 85-129 (266)
220 PLN02540 methylenetetrahydrofo 21.3 2E+02 0.0044 35.0 6.7 87 84-184 164-259 (565)
221 PF00120 Gln-synt_C: Glutamine 21.0 1.3E+02 0.0028 32.6 4.6 61 75-140 68-140 (259)
222 KOG4039 Serine/threonine kinas 20.9 1.5E+02 0.0033 31.0 4.8 74 69-147 102-180 (238)
223 cd02874 GH18_CFLE_spore_hydrol 20.8 4.4E+02 0.0095 29.0 8.9 112 85-229 21-133 (313)
224 COG1082 IolE Sugar phosphate i 20.8 1E+03 0.022 25.1 12.0 51 74-133 13-63 (274)
225 COG1891 Uncharacterized protei 20.5 33 0.00072 35.4 -0.0 66 61-134 116-186 (235)
226 PF00282 Pyridoxal_deC: Pyrido 20.4 1.2E+02 0.0026 34.7 4.4 71 57-134 139-230 (373)
227 cd04740 DHOD_1B_like Dihydroor 20.3 2E+02 0.0044 31.5 6.0 60 74-137 100-163 (296)
228 PRK09248 putative hydrolase; V 20.2 2.5E+02 0.0054 29.9 6.6 67 60-138 93-163 (246)
229 PF03102 NeuB: NeuB family; I 20.0 1.1E+02 0.0023 33.3 3.7 65 72-136 52-121 (241)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.2e-227 Score=1971.43 Aligned_cols=770 Identities=55% Similarity=1.040 Sum_probs=727.3
Q ss_pred eEEEecceEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVG 125 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 125 (849)
+|+||+++|+|||||++|+||||||||++|++|+|+|+||||+|||+|+||||||+|||+||+|||+|++||++||++|+
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~ 108 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQ 108 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccccc
Q 038226 126 SSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYG 205 (849)
Q Consensus 126 ~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg 205 (849)
|+||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|++++|++++||||||+|||||||
T Consensus 109 e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 109 AAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred HcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccccccCcccHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCcccCCCCCCCCCCCeeeeecCccccCccCCCC
Q 038226 206 NMESSYGQQGKDYVKWAASMALGLGAGVPWVMCKQTDAPENIIDACNGYYCDGYKPNSYNKPTLWTENWDGWYTTWGGRL 285 (849)
Q Consensus 206 ~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~~~f~~~~p~~P~~~tE~w~GWf~~wG~~~ 285 (849)
++.+.|+.+|++||+||++|++++|++|||+||+|.++++++++||||.+|+.|.++++.+|+||||||+|||++||+++
T Consensus 189 s~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~ 268 (840)
T PLN03059 189 PVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAV 268 (840)
T ss_pred ceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCC
Confidence 98777888999999999999999999999999999888999999999999999999888899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCcceeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHHHhhccc
Q 038226 286 PHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPA 365 (849)
Q Consensus 286 ~~r~~ed~a~~v~~~~~~ggs~~NyYM~hGGTNfG~~~g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l~~~~~~ 365 (849)
+.|+++|+|++++++|++|+|++||||||||||||||+|+++++|||||||||||+|++++|||.|||++|++++.|+++
T Consensus 269 ~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~ 348 (840)
T PLN03059 269 PNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPA 348 (840)
T ss_pred CcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccccccccccCCcccceEeeecccCCCcceeeeecccccCcceEEEEcCeeeecCCCceeecCCCCceeeccceeecc
Q 038226 366 LVAADSAQYIKLGQNQEAHVYRANRYGSQSNCSAFLANIDEHTAASVTFLGQSYTLPPWSVSILPDCRNTVFNTAKVSSQ 445 (849)
Q Consensus 366 l~~~~~~~~~~lg~~~~a~vy~~~~~~~~~~~~aFl~N~~~~~~~~v~f~~~~y~lp~~svsilpd~~~v~~nTa~v~~q 445 (849)
|+..+ |...+||+.+||++|+ ..+ .|+||++|+++..+.+|+|+|++|.||||||||||||++++|||++|++|
T Consensus 349 l~~~~-p~~~~lg~~~ea~~y~----~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q 422 (840)
T PLN03059 349 LVSVD-PTVTSLGSNQEAHVFK----SKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQ 422 (840)
T ss_pred ccCCC-CceeccCCceeEEEcc----Ccc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccc
Confidence 99888 8888999999999998 555 79999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccCCCCCCCCCCccchhhhccccCCCCccccccc-ccccCCCcccccccccccCCCCCCCceEEEEEEeecCC
Q 038226 446 TSIKTVEFSLPLSPNISVPQQSMIESKLSSTSKSWMTVKEP-IGVWSENNFTVQGILEHLNVTKDYSDYLWHITQIYVSD 524 (849)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~~~~e~~l~~~~~~W~~~~E~-~~~~~~~~~~~~~~lEql~~t~d~sdYlwY~t~v~~~~ 524 (849)
++.++... . ...+.|+++.|+ .+.+++.+++...++||+|+|+|++||+||+|+|....
T Consensus 423 ~~~~~~~~-----------~---------~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 423 SSQMKMNP-----------V---------GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred cceeeccc-----------c---------cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 76664311 0 134589999998 56666678889999999999999999999999999876
Q ss_pred CcccccccCCCCceEEeccccceEEEEECCEEEEEEEeee----EEEEeeeeecCCCcEEEEEEecCCccccccCcCCCC
Q 038226 525 DDISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHW----VKVVQPVEFQSGYNDLILLSQTVGLQNYGAFLEKDG 600 (849)
Q Consensus 525 ~~~~~~~~~~~~~~L~v~~~~d~~~VfVNG~~vGs~~g~~----~~~~~~v~L~~G~n~LslLse~~Gl~NyG~~~e~~~ 600 (849)
++. +++++.+++|+|.+++|++||||||+++|+++++. ++|+.+|+|+.|.|+|+||||||||+|||++|+++.
T Consensus 483 ~~~--~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~ 560 (840)
T PLN03059 483 DEG--FLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWN 560 (840)
T ss_pred Ccc--ccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccc
Confidence 554 44667889999999999999999999999999865 899999999999999999999999999999999999
Q ss_pred cccccceEEcCccCCcccccccceEEecCCcccchhccccc-cccccccccccCCCCccceEEEEEEeCCCCCCceEEEe
Q 038226 601 AGFRGQVKLTGFKNGDIDLSKILWTYQVGLKGEFQQIYSIE-ENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDL 679 (849)
Q Consensus 601 kGI~G~V~L~g~~~~~~dLs~~~W~y~vGL~gE~~~~~~~~-~~~~~W~~~~~~~~~~~~twYkt~F~~p~g~dpv~Ldl 679 (849)
|||+|+|+|+|+++++.||+++.|.|++||+||.++||+.+ ..+++|.+.+..+.++|++|||++|++|+++|||+|||
T Consensus 561 kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm 640 (840)
T PLN03059 561 AGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDM 640 (840)
T ss_pred ccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEec
Confidence 99999999999999999999999999999999999999976 66889987655555678999999999999999999999
Q ss_pred CCCCceEEEECCeeeeeeeeeccCCCCCCCCCCCCCCCCCCcCcCCCCCCceeEEecCccccccCCcEEEEEeecCCCCc
Q 038226 680 GSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPF 759 (849)
Q Consensus 680 ~gmgKG~~wVNG~~IGRYW~~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q~~YhVPr~~Lk~g~N~LVlfEe~gg~p~ 759 (849)
+|||||+|||||+||||||+..|+.+|| +.|||||+|+++||+||||+||||||||||+|||+++|+||||||+||+|+
T Consensus 641 ~gmGKG~aWVNG~nIGRYW~~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~ 719 (840)
T PLN03059 641 SSMGKGQIWINGQSIGRHWPAYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPA 719 (840)
T ss_pred ccCCCeeEEECCcccccccccccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCC
Confidence 9999999999999999999667888999 889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecchhccccccccCCCcccccccccccCCcccccCCCCeeeeeCCCCCeEeEEEeeeeCCCccccccccccccc
Q 038226 760 EISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCH 839 (849)
Q Consensus 760 ~i~l~~~~~~~vc~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~~g~~is~i~fAsfG~p~G~Cg~f~~g~c~ 839 (849)
.|+|+++++++||++++|+|| ++++|++++.. .++..+|+++|+|+.|++||+|+|||||+|+|+|++|+.|+||
T Consensus 720 ~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~----~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~ 794 (840)
T PLN03059 720 GISLVKRTTDSVCADIFEGQP-ALKNWQIIASG----KVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCH 794 (840)
T ss_pred ceEEEEeecCcccccccccCC-ccccccccccc----cccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEe
Confidence 999999999999999999995 59999996542 1357799999999999999999999999999999999999999
Q ss_pred CCcccccccC
Q 038226 840 APMSLSVVSE 849 (849)
Q Consensus 840 a~~s~~~v~k 849 (849)
|++|+++|+|
T Consensus 795 a~~S~~vV~k 804 (840)
T PLN03059 795 AHKSYDAFER 804 (840)
T ss_pred CCcHHHHHHH
Confidence 9999999985
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-174 Score=1471.48 Aligned_cols=625 Identities=56% Similarity=1.051 Sum_probs=577.9
Q ss_pred CceEEEecceEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHH
Q 038226 44 PFNVSYDHRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKL 123 (849)
Q Consensus 44 ~~~v~~d~~~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~l 123 (849)
...|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||.||+|||+|++||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccc
Q 038226 124 VGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENE 203 (849)
Q Consensus 124 a~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENE 203 (849)
|++.||||+||+||||||||++||||.||+..|+|.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCccc-CCCC-CCCCCCCeeeeecCccccCcc
Q 038226 204 YGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMCKQTDAPENIIDACNGYYC-DGYK-PNSYNKPTLWTENWDGWYTTW 281 (849)
Q Consensus 204 yg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~t~ng~~~-~~f~-~~~p~~P~~~tE~w~GWf~~w 281 (849)
||.+...|++.+++|++|.+.|+...+.+|||+||+|.|+|+++|++|||++| +.|. |++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99999899999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCcceeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHHHh
Q 038226 282 GGRLPHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKL 361 (849)
Q Consensus 282 G~~~~~r~~ed~a~~v~~~~~~ggs~~NyYM~hGGTNfG~~~g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l~~ 361 (849)
|++++.|++||+|++|++|+++|||++|||||||||||||||| ++++|||||||||| |..|+|||+|+|.+|.+++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hcccccccccccccccCCcccceEeeecccCCCcceeeeecccccCcceEEEEcCeeeecCCCceeecCCCCceeeccce
Q 038226 362 CEPALVAADSAQYIKLGQNQEAHVYRANRYGSQSNCSAFLANIDEHTAASVTFLGQSYTLPPWSVSILPDCRNTVFNTAK 441 (849)
Q Consensus 362 ~~~~l~~~~~~~~~~lg~~~~a~vy~~~~~~~~~~~~aFl~N~~~~~~~~v~f~~~~y~lp~~svsilpd~~~v~~nTa~ 441 (849)
|++.+..++ +...++|+.++ .|++|+.|+++..++.|.|++.+|.+|+|+++|||||++++||||+
T Consensus 332 ~ep~lv~gd-~~~~kyg~~~~-------------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~ 397 (649)
T KOG0496|consen 332 CEPALVAGD-ITTAKYGNLRE-------------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAK 397 (649)
T ss_pred cCccccccC-cccccccchhh-------------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccc
Confidence 999999998 76667665543 4999999999999999999999999999999999999999999998
Q ss_pred eeccccceeeeccCCCCCCCCCCccchhhhccccCCCCcccccccccccCCCcccccccccccCCCCCCCceEEEEEEee
Q 038226 442 VSSQTSIKTVEFSLPLSPNISVPQQSMIESKLSSTSKSWMTVKEPIGVWSENNFTVQGILEHLNVTKDYSDYLWHITQIY 521 (849)
Q Consensus 442 v~~q~~~~~~~~~~~~~p~~~~~~~~~~e~~l~~~~~~W~~~~E~~~~~~~~~~~~~~~lEql~~t~d~sdYlwY~t~v~ 521 (849)
+..| |..+.|+++..... +..+|++|.|+++
T Consensus 398 ~~~~----------------------------------~~~~~e~~~~~~~~---------------~~~~~ll~~~~~t 428 (649)
T KOG0496|consen 398 VMAQ----------------------------------WISFTEPIPSEAVG---------------QSFGGLLEQTNLT 428 (649)
T ss_pred cccc----------------------------------cccccCCCcccccc---------------CcceEEEEEEeec
Confidence 8643 44445655533211 1233555555554
Q ss_pred cCCCcccccccCCCCceEEec-cccceEEEEECCEEEEEEEeee----EEEEeeeeecCCCcEEEEEEecCCccccccCc
Q 038226 522 VSDDDISFWKTNEVRPTVTID-SMRDVLRVFINGQLTGSVIGHW----VKVVQPVEFQSGYNDLILLSQTVGLQNYGAFL 596 (849)
Q Consensus 522 ~~~~~~~~~~~~~~~~~L~v~-~~~d~~~VfVNG~~vGs~~g~~----~~~~~~v~L~~G~n~LslLse~~Gl~NyG~~~ 596 (849)
.+.++. ..|+|. +.+|++||||||+++|+++|+. +.|.+++.|+.|.|+|+||||+|||+||| ++
T Consensus 429 ~d~sd~---------t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~ 498 (649)
T KOG0496|consen 429 KDKSDT---------TSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HF 498 (649)
T ss_pred cccCCC---------ceEeecccccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cc
Confidence 433221 245566 9999999999999999999964 88999999999999999999999999999 89
Q ss_pred CCCCcccccceEEcCccCCcccccccceEEecCCcccchhccccc-cccccccccccCCCCccceEEEEEEeCCCCCCce
Q 038226 597 EKDGAGFRGQVKLTGFKNGDIDLSKILWTYQVGLKGEFQQIYSIE-ENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPV 675 (849)
Q Consensus 597 e~~~kGI~G~V~L~g~~~~~~dLs~~~W~y~vGL~gE~~~~~~~~-~~~~~W~~~~~~~~~~~~twYkt~F~~p~g~dpv 675 (849)
+++.|||+|+|+|+|. +||++++|.|++||+||.+.+|+.+ .++++|...+..+.++|++||| +|++|++.+|+
T Consensus 499 e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t 573 (649)
T KOG0496|consen 499 ENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPT 573 (649)
T ss_pred cccccccccceEEeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCe
Confidence 9999999999999987 7899999999999999999999988 8889998876655568999999 99999999999
Q ss_pred EEEeCCCCceEEEECCeeeeeeeeeccCCCCCCCCCCCCCCCCCCcCcCCCCCCceeEEecCccccccCCcEEEEEeecC
Q 038226 676 ALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETG 755 (849)
Q Consensus 676 ~Ldl~gmgKG~~wVNG~~IGRYW~~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q~~YhVPr~~Lk~g~N~LVlfEe~g 755 (849)
+|||.|||||+|||||+||||||... || |++|||||+|||++.|+||||||+|
T Consensus 574 ~Ldm~g~GKG~vwVNG~niGRYW~~~--------------------------G~-Q~~yhvPr~~Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 574 ALDMNGWGKGQVWVNGQNIGRYWPSF--------------------------GP-QRTYHVPRSWLKPSGNLLVVFEEEG 626 (649)
T ss_pred EEecCCCcceEEEECCcccccccCCC--------------------------CC-ceEEECcHHHhCcCCceEEEEEecc
Confidence 99999999999999999999999431 66 8999999999999999999999999
Q ss_pred CCCceEEEEeecchhcccccccc
Q 038226 756 GNPFEISVKLRSTRIVCEQVSES 778 (849)
Q Consensus 756 g~p~~i~l~~~~~~~vc~~~~e~ 778 (849)
|+|.+|+|+++.+..+|+.++|+
T Consensus 627 ~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 627 GDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred CCCccceEEEeEeeeEeeecccC
Confidence 99999999999999999998873
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=4e-89 Score=747.53 Aligned_cols=297 Identities=42% Similarity=0.816 Sum_probs=233.3
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE
Q 038226 53 AIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ 132 (849)
Q Consensus 53 ~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi 132 (849)
+|+|||||++|+||||||+|+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccC
Q 038226 133 LRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYG 212 (849)
Q Consensus 133 LR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 212 (849)
|||||||||||++||+|.||.+++++++||+|++|+++|++|+++|++++++ +++++||||||+|||||||. .
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~GGpII~vQvENEyg~-----~ 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKP--LQYTNGGPIIMVQVENEYGS-----Y 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGG--GBGGGTSSEEEEEESSSGGC-----T
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHh--hhhcCCCceehhhhhhhhCC-----C
Confidence 9999999999999999999999999999999999999999999999999995 89999999999999999994 2
Q ss_pred cccHHHHHHHHHHHHhcCCc-cceEEeccC--------CCCccccccCCCcccCCC--------CCCCCCCCeeeeecCc
Q 038226 213 QQGKDYVKWAASMALGLGAG-VPWVMCKQT--------DAPENIIDACNGYYCDGY--------KPNSYNKPTLWTENWD 275 (849)
Q Consensus 213 ~~~~~Y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~vi~t~ng~~~~~f--------~~~~p~~P~~~tE~w~ 275 (849)
.++++||+.|++++++.+++ ++.++++.. ++|+..+.+|+++.|... ...+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 666666531 244445667777777331 2557889999999999
Q ss_pred cccCccCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeeccCCCCCCCCCCCc----cccccCCCCCCCCCCCCchhhHH
Q 038226 276 GWYTTWGGRLPHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFY----ITSYDYDAPIDEYGLLSEPKWGH 351 (849)
Q Consensus 276 GWf~~wG~~~~~r~~ed~a~~v~~~~~~ggs~~NyYM~hGGTNfG~~~g~~~~----~TSYDYdAPl~E~G~~~~pKy~~ 351 (849)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|+... +|||||||||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 799999999999999986554 4999999999999998 599999
Q ss_pred HHHHHHH
Q 038226 352 LKDLHAA 358 (849)
Q Consensus 352 lr~lh~~ 358 (849)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-35 Score=340.93 Aligned_cols=292 Identities=22% Similarity=0.289 Sum_probs=213.8
Q ss_pred EEEecceEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEE-ceeccccCCCCcceeecCcchHHHHHHHHH
Q 038226 47 VSYDHRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIET-YVFWNAHESIRGQYNFKGKNDIVKFVKLVG 125 (849)
Q Consensus 47 v~~d~~~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~t-yvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 125 (849)
|++++..+++||+|++++||++||+|+++++|.|+|+|||++|+|+|++ |+.||.|||++|+|||+ .+|++ ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 89999 999999
Q ss_pred hcCCEEEEecCc-ccccccCCCCCCCccCcCCCcccc---------cCChhHHHHHHHHHHHHHHHHHhcccccccCCcE
Q 038226 126 SSGLYLQLRIGP-YVCAEWNFGGFPVWLRDIPGIEFR---------TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPI 195 (849)
Q Consensus 126 ~~GL~viLR~GP-Yi~aEw~~GG~P~WL~~~p~i~~R---------t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpI 195 (849)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|++++++.+..|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876642232 346678888877555554443 4899999
Q ss_pred EEecccccccccccccCcccHHHHHHHHHHHHhc-CCccceEEec-cCCCCc-cccccCC-----Cccc--CCCCCCCCC
Q 038226 196 IMLQIENEYGNMESSYGQQGKDYVKWAASMALGL-GAGVPWVMCK-QTDAPE-NIIDACN-----GYYC--DGYKPNSYN 265 (849)
Q Consensus 196 I~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~-~~~~p~-~vi~t~n-----g~~~--~~f~~~~p~ 265 (849)
|+||++||||++.|.+..|.+.+..||++.+-++ ...-+|=+-. ..+..+ ..|.+-+ +..- -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976666678899999999987422 2333432211 000000 0011111 1110 011111122
Q ss_pred C----CeeeeecCcccc-CccCCCCCCCC-hHHHHHHHHHHHhcCCcceeeeeeeccCCCC------CCCCCC---C---
Q 038226 266 K----PTLWTENWDGWY-TTWGGRLPHRP-VEDLAFAVARFFQRGGSFMNYYMYFGGTNFG------RTSGGP---F--- 327 (849)
Q Consensus 266 ~----P~~~tE~w~GWf-~~wG~~~~~r~-~ed~a~~v~~~~~~ggs~~NyYM~hGGTNfG------~~~g~~---~--- 327 (849)
+ +....|.|-+|| +.|..+.-... .+.-++.+++.|..... -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556667777888 55555433333 23334455566666655 6999999999999 555543 2
Q ss_pred ----ccccccCCCCCCCCCCCCch
Q 038226 328 ----YITSYDYDAPIDEYGLLSEP 347 (849)
Q Consensus 328 ----~~TSYDYdAPl~E~G~~~~p 347 (849)
..|+|++++.+.+.|.++=|
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~l~ 335 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALRLP 335 (673)
T ss_pred cCCcchhhhhhccCCCCCcccccc
Confidence 58999999999999985433
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=4.1e-20 Score=207.37 Aligned_cols=263 Identities=21% Similarity=0.336 Sum_probs=162.4
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEE-ceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCC
Q 038226 68 IHYPRATPEMWPDLIAKSKEGGADVIET-YVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFG 146 (849)
Q Consensus 68 iHy~R~~~~~W~d~l~k~Ka~GlN~I~t-yvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~G 146 (849)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67799999999999999 899999999999999999985 56
Q ss_pred CCCCccCc-CCCccc----------------ccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccccccccc
Q 038226 147 GFPVWLRD-IPGIEF----------------RTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMES 209 (849)
Q Consensus 147 G~P~WL~~-~p~i~~----------------Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~ 209 (849)
..|.||.+ .|++.. ..++|.|++++++++++|+++++++ ..||++||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCc-
Confidence 78999975 676532 1457899999999999999988754 3799999999999753
Q ss_pred ccC-cccHHHHHHHHHHHHhc-------CCc-------------cceEEeccC------C--------------------
Q 038226 210 SYG-QQGKDYVKWAASMALGL-------GAG-------------VPWVMCKQT------D-------------------- 242 (849)
Q Consensus 210 ~~~-~~~~~Y~~~l~~~~~~~-------g~~-------------vP~~~~~~~------~-------------------- 242 (849)
+|+ .+.++|.+||++++... |.. .|--+.... |
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 36788999999988631 111 122211000 0
Q ss_pred ---CCccccccC------CCc-------ccC-----CC--------C--------------CCCCCCCeeeeecCccccC
Q 038226 243 ---APENIIDAC------NGY-------YCD-----GY--------K--------------PNSYNKPTLWTENWDGWYT 279 (849)
Q Consensus 243 ---~p~~vi~t~------ng~-------~~~-----~f--------~--------------~~~p~~P~~~tE~w~GWf~ 279 (849)
.|+..+-+. .+. .+| .+ . ...+++|.+.+|..+| -.
T Consensus 223 r~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 223 REYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 111001000 000 001 00 0 1247899999999998 66
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcCCcceeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHH
Q 038226 280 TWGGRLPHRPVEDLAFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAI 359 (849)
Q Consensus 280 ~wG~~~~~r~~ed~a~~v~~~~~~ggs~~NyYM~hGGTNfG~~~g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l 359 (849)
.|+.......+..+....-.-++.|+..+.|+=+ ..-.+|.-.. ..+-|+-+|...+++|.+++++.+.|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHH
Confidence 6766555566667766666778999998888766 3334443321 13577888944589999999998887
Q ss_pred H
Q 038226 360 K 360 (849)
Q Consensus 360 ~ 360 (849)
+
T Consensus 372 ~ 372 (374)
T PF02449_consen 372 K 372 (374)
T ss_dssp H
T ss_pred h
Confidence 6
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.29 E-value=1e-10 Score=127.58 Aligned_cols=193 Identities=20% Similarity=0.298 Sum_probs=126.9
Q ss_pred EEEecceEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHH
Q 038226 47 VSYDHRAIIIDGNRRMLISAGIHYPR------ATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKF 120 (849)
Q Consensus 47 v~~d~~~~~idGk~~~l~sG~iHy~R------~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~f 120 (849)
|.+.++.|+|||||++|-+...|... .+++.|+.+|++||++|+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 67889999999999999999999752 47899999999999999999999 777764 789
Q ss_pred HHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecc
Q 038226 121 VKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQI 200 (849)
Q Consensus 121 l~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QI 200 (849)
+++|.+.||+|+.-+ |. .+.-.|-... .......|+.|++.+.+-+++++.+.+.|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~-~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PL-------EGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE--S--------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEec-cc-------cccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 999999999999765 21 1221222111 113556789999988888888888887655 8999999
Q ss_pred cccccccccccCcccHHHHHHHHHHHHhcCCccceEEeccC--CCCccc-cccCCCcccC-----CCC----C--CCCCC
Q 038226 201 ENEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMCKQT--DAPENI-IDACNGYYCD-----GYK----P--NSYNK 266 (849)
Q Consensus 201 ENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~--~~p~~v-i~t~ng~~~~-----~f~----~--~~p~~ 266 (849)
-||-. ...+++.|.+++++.+-+-|....... ...+.+ .+...+.|-. .+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99983 357888999999998887775543331 011111 1111111110 011 1 35789
Q ss_pred CeeeeecCccccCc
Q 038226 267 PTLWTENWDGWYTT 280 (849)
Q Consensus 267 P~~~tE~w~GWf~~ 280 (849)
|.+.+||....+..
T Consensus 200 P~i~sEyg~~~~~~ 213 (298)
T PF02836_consen 200 PIIISEYGADAYNS 213 (298)
T ss_dssp -EEEEEESEBBSST
T ss_pred CeEehhcccccccc
Confidence 99999997665543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.09 E-value=1.1e-08 Score=122.25 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=113.6
Q ss_pred ceEEEecceEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHH
Q 038226 45 FNVSYDHRAIIIDGNRRMLISAGIHYPR------ATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIV 118 (849)
Q Consensus 45 ~~v~~d~~~~~idGk~~~l~sG~iHy~R------~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~ 118 (849)
++|+++++.|+|||+|+++-+...|... .+++.|..+|+.||++|+|+|++ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 4588999999999999999999998542 46788999999999999999999 577754 6
Q ss_pred HHHHHHHhcCCEEEEecCcccccccCCCCCCCccC-------c-CCCcccccCChhHHHHHHHHHHHHHHHHHhcccccc
Q 038226 119 KFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR-------D-IPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSW 190 (849)
Q Consensus 119 ~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~-------~-~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~ 190 (849)
+|+++|.++||+|+-.+. .-|+..|+. . .+....-..+|.++++.++-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999997752 112222221 1 11111123456666666665666655554
Q ss_pred cCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 038226 191 QGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMC 238 (849)
Q Consensus 191 ~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~ 238 (849)
|...||+|-|-||.... ......|++.+.+.+++++-+-|...+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 45589999999997531 123457788888889988877775544
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.81 E-value=8e-08 Score=120.85 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=119.9
Q ss_pred ceEEEecceEEECCeEeEEEEEEecCC-----C-CCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHH
Q 038226 45 FNVSYDHRAIIIDGNRRMLISAGIHYP-----R-ATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIV 118 (849)
Q Consensus 45 ~~v~~d~~~~~idGk~~~l~sG~iHy~-----R-~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~ 118 (849)
++|+++++.|+|||||+++.+...|.. | .+++.|+.+|+.||++|+|+|++ .|-|.. .
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------P 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 457888899999999999999998843 2 47889999999999999999999 476654 6
Q ss_pred HHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEe
Q 038226 119 KFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIML 198 (849)
Q Consensus 119 ~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~ 198 (849)
+|+++|.+.||+|+-.. |..|..|.. . .+...-+++|.+.++..+=+++++.+. .|...||+|
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQ-------KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEE
Confidence 89999999999999875 333322211 0 011112466766654433344444444 455689999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHhcCCccceEEeccCCCC--ccccccCCCcc--cCCCCCCCCCCCeeeeecC
Q 038226 199 QIENEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMCKQTDAP--ENIIDACNGYY--CDGYKPNSYNKPTLWTENW 274 (849)
Q Consensus 199 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~~~~p--~~vi~t~ng~~--~~~f~~~~p~~P~~~tE~w 274 (849)
=+-||-+. + . .++.+.+.+++++-.-|+ +..+.... -+++...=+.+ +..+....+++|.+.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999762 2 2 246677778887766664 43322111 11221110000 1122233457999999973
No 9
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=8.1e-08 Score=116.99 Aligned_cols=134 Identities=21% Similarity=0.304 Sum_probs=105.5
Q ss_pred ceEEEecceEEECCeEeEEEEEEecCC-----CCCcc-cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHH
Q 038226 45 FNVSYDHRAIIIDGNRRMLISAGIHYP-----RATPE-MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIV 118 (849)
Q Consensus 45 ~~v~~d~~~~~idGk~~~l~sG~iHy~-----R~~~~-~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~ 118 (849)
+.|+++...|.|||||+++-+..-|.+ |...+ .-+++|++||++|+|+|+|- |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 568999999999999999999999976 34444 48899999999999999993 88876 7
Q ss_pred HHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEe
Q 038226 119 KFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIML 198 (849)
Q Consensus 119 ~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~ 198 (849)
+|++||.+.||+||-.+ ..||.. +| +++.|++.+..=+++++++.|.|| .||+|
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999875 333332 12 788899888887888887776554 89999
Q ss_pred cccccccccccccCcccHHHHHHHHHH
Q 038226 199 QIENEYGNMESSYGQQGKDYVKWAASM 225 (849)
Q Consensus 199 QIENEyg~~~~~~~~~~~~Y~~~l~~~ 225 (849)
=+.||-|. |.....-.+|.++.
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~ 423 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKAS 423 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhc
Confidence 99999873 43444444555544
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.81 E-value=7e-08 Score=102.78 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=110.1
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccC-CCCcc-eeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 57 DGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHE-SIRGQ-YNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 57 dGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hE-p~~G~-ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
+|+++.+.+-+.|+.. +..-++.++++|++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12788999999999999999999995555 67764 66566679999999999999999987
Q ss_pred cCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccc--cC
Q 038226 135 IGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESS--YG 212 (849)
Q Consensus 135 ~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~--~~ 212 (849)
+=. .|.|...... -...+...+...++++.|++++|. ..+|++++|=||....... ..
T Consensus 82 ~h~----------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LHN----------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EEE----------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ecc----------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 521 2777433211 112333445556667777777653 3369999999999864211 00
Q ss_pred ----cccHHHHHHHHHHHHhcCCccceEEec
Q 038226 213 ----QQGKDYVKWAASMALGLGAGVPWVMCK 239 (849)
Q Consensus 213 ----~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 239 (849)
..-..+++.+.+..|+.+.+.++++-.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011345555666677778777665543
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.78 E-value=1e-08 Score=96.76 Aligned_cols=66 Identities=33% Similarity=0.778 Sum_probs=47.6
Q ss_pred ccceEEEEEEeCCCCCCceEEE---e--CCCCceEEEECCeeeeeeeeeccCCCCCCCCCCCCCCCCCCcCcCCCCCCce
Q 038226 657 STFTWYKTYFDAPDGIDPVALD---L--GSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQ 731 (849)
Q Consensus 657 ~~~twYkt~F~~p~g~dpv~Ld---l--~gmgKG~~wVNG~~IGRYW~~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q 731 (849)
.+..|||++|..-. .| +.|. . +...+.+|||||++|||||+-+ +||+
T Consensus 34 ~g~~~Yrg~F~~~~-~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~--------------------------g~q~ 85 (111)
T PF13364_consen 34 AGYLWYRGTFTGTG-QD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI--------------------------GPQT 85 (111)
T ss_dssp SCEEEEEEEEETTT-EE-EEEE-EEECSSTTEEEEEEETTEEEEEEETTT--------------------------ECCE
T ss_pred CCCEEEEEEEeCCC-cc-eeEEEEeccCCCceEEEEEECCEEeeeecCCC--------------------------CccE
Confidence 46899999996321 22 4444 3 3355899999999999999332 6887
Q ss_pred eEEecCccccccCCcEEEEE
Q 038226 732 TWYHVPRSWLQASNNLLVIF 751 (849)
Q Consensus 732 ~~YhVPr~~Lk~g~N~LVlf 751 (849)
+++ ||..+|+.++|.|+++
T Consensus 86 tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 86 TFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEE-E-BTTBTTCEEEEEEE
T ss_pred EEE-eCceeecCCCEEEEEE
Confidence 777 9999999886666555
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.77 E-value=1.3e-07 Score=118.77 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=106.0
Q ss_pred ceEEEecceEEECCeEeEEEEEEecCC------CCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHH
Q 038226 45 FNVSYDHRAIIIDGNRRMLISAGIHYP------RATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIV 118 (849)
Q Consensus 45 ~~v~~d~~~~~idGk~~~l~sG~iHy~------R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~ 118 (849)
++|+++++.|+|||||+++-+...|.. +.+++.++.+|+.||++|+|+|++ .|-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 457788889999999999999999843 358899999999999999999999 466643 6
Q ss_pred HHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEe
Q 038226 119 KFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIML 198 (849)
Q Consensus 119 ~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~ 198 (849)
+|+++|.+.||+|+-... . | ..|-.|.. . -.+||.|.+++.+=+++++.+.+ |...||+|
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999997752 1 1 11111210 0 13577776665444444444444 55689999
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHhcCCccceEEe
Q 038226 199 QIENEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMC 238 (849)
Q Consensus 199 QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~ 238 (849)
=+-||-+. + .....+.+.+++++-.-|....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 99999762 2 2245666777777766675443
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.62 E-value=2.5e-07 Score=87.29 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=60.1
Q ss_pred ccccccCCCCCCCceEEEEEEeecCCCcccccccCCCCce-EEec-cccceEEEEECCEEEEEEE---eeeEEEEeeee-
Q 038226 499 GILEHLNVTKDYSDYLWHITQIYVSDDDISFWKTNEVRPT-VTID-SMRDVLRVFINGQLTGSVI---GHWVKVVQPVE- 572 (849)
Q Consensus 499 ~~lEql~~t~d~sdYlwY~t~v~~~~~~~~~~~~~~~~~~-L~v~-~~~d~~~VfVNG~~vGs~~---g~~~~~~~~v~- 572 (849)
.+.+..+.+++.+||+||++++...+.+. ... |.+. +.+++++|||||+++|+.. +...+|..|..
T Consensus 22 ~~~l~~~~~g~~~g~~~Yrg~F~~~~~~~--------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i 93 (111)
T PF13364_consen 22 GPVLYASDYGFHAGYLWYRGTFTGTGQDT--------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI 93 (111)
T ss_dssp SSSTCCGCGTSSSCEEEEEEEEETTTEEE--------EEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT
T ss_pred CceeccCccccCCCCEEEEEEEeCCCcce--------eEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee
Confidence 34566777788999999999997533221 223 4443 8899999999999999988 33355655543
Q ss_pred ecCCCcEEEEEEecCCc
Q 038226 573 FQSGYNDLILLSQTVGL 589 (849)
Q Consensus 573 L~~G~n~LslLse~~Gl 589 (849)
|+.++|+|++|+++||+
T Consensus 94 l~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 94 LKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp BTTCEEEEEEEEE-STT
T ss_pred ecCCCEEEEEEEeCCCC
Confidence 67777789999999996
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.22 E-value=4.2e-06 Score=83.34 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=72.0
Q ss_pred CCCCceEEEEEEeecCCCcccccccCCCCceEEeccccceEEEEECCEEEEEEEeee--EEEEeeeeecCCC-cEEEEEE
Q 038226 508 KDYSDYLWHITQIYVSDDDISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHW--VKVVQPVEFQSGY-NDLILLS 584 (849)
Q Consensus 508 ~d~sdYlwY~t~v~~~~~~~~~~~~~~~~~~L~v~~~~d~~~VfVNG~~vGs~~g~~--~~~~~~v~L~~G~-n~LslLs 584 (849)
....++.||++++.++.+. .+....|.+.++.+.+.|||||+++|+..+.. +.++..-.|+.|. |+|+|.+
T Consensus 64 ~~~~~~~wYr~~f~lp~~~------~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW------KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG------TTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh------cCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChhhccCCCCEEEEEEE
Confidence 4578999999999986532 35677899999999999999999999988754 6666655588888 9999999
Q ss_pred ecCCcccc-ccCcCCCCcccccceEEc
Q 038226 585 QTVGLQNY-GAFLEKDGAGFRGQVKLT 610 (849)
Q Consensus 585 e~~Gl~Ny-G~~~e~~~kGI~G~V~L~ 610 (849)
.+..-..+ ...-.....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 96554332 011123568999999874
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.99 E-value=1.9e-05 Score=84.82 Aligned_cols=116 Identities=22% Similarity=0.407 Sum_probs=88.5
Q ss_pred ccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHH
Q 038226 99 WNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKI 178 (849)
Q Consensus 99 Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i 178 (849)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 9999999999999997 333322 433 6899987533 345678888999998
Q ss_pred HHHHHhcccccccCCcEEEecccccccccc-------cccCcccHHHHHHHHHHHHhcCCccceEEec
Q 038226 179 VDLMREEMLFSWQGGPIIMLQIENEYGNME-------SSYGQQGKDYVKWAASMALGLGAGVPWVMCK 239 (849)
Q Consensus 179 ~~~~~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 239 (849)
+.+++ |.|..|+|=||.-+.. ..+...+.+|+...-+.|++.+-++.+++++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88875 3588999999954321 0111234689999999999998888888875
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.86 E-value=0.00018 Score=78.75 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=83.6
Q ss_pred ceEEEecceEE--ECCeEeEEEEEEecCCCC-----------CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceee
Q 038226 45 FNVSYDHRAII--IDGNRRMLISAGIHYPRA-----------TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNF 111 (849)
Q Consensus 45 ~~v~~d~~~~~--idGk~~~l~sG~iHy~R~-----------~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF 111 (849)
..|+..++.|+ -+|++|+|.+-.+.+... .++.|..++..||++|+|||++|- ..|.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~------ 78 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS------ 78 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC------
Confidence 35888999998 799999998877665432 467899999999999999999972 2333
Q ss_pred cCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCCh--hHHHHHHHHHHHHHHHHHhccccc
Q 038226 112 KGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNA--PFKEEMQRFVKKIVDLMREEMLFS 189 (849)
Q Consensus 112 ~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~--~f~~~~~~~~~~i~~~~~~~~l~~ 189 (849)
.|=++++++.+++|+||||-.+. |+..+..++| .|-...-.-+.++++.++.++
T Consensus 79 ---~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~--- 134 (314)
T PF03198_consen 79 ---KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD--- 134 (314)
T ss_dssp ---S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T---
T ss_pred ---CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC---
Confidence 37789999999999999998642 2333333445 453333333445556666544
Q ss_pred ccCCcEEEecccccccccccccC--cccHHHHHHHHHHHHhcCC-ccce
Q 038226 190 WQGGPIIMLQIENEYGNMESSYG--QQGKDYVKWAASMALGLGA-GVPW 235 (849)
Q Consensus 190 ~~gGpII~~QIENEyg~~~~~~~--~~~~~Y~~~l~~~~~~~g~-~vP~ 235 (849)
+++++=+-||--+-...-. +.-|+.++.+|+-.++.+. .+|+
T Consensus 135 ----N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 ----NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 7999999999864321100 1234444444554555554 4564
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.70 E-value=6.9e-05 Score=86.46 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=81.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.+.++||.+|+-. ..=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL--------~Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL--------YHWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee--------ccCCccHHHHh
Confidence 468999999999999999999999999999 789998888899999999999999988654 23458999986
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 155 IPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 155 ~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
..|- .++.+.++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 6553 3577777788888888887764
No 18
>PLN02705 beta-amylase
Probab=97.67 E-value=0.00013 Score=85.11 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=79.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC-----
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG----- 146 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G----- 146 (849)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ --|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 455678899999999999999999999998 799999996 455599999999995 5654 22433 222
Q ss_pred CCCCccCc----CCCcccc------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEe
Q 038226 147 GFPVWLRD----IPGIEFR------------------------TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIML 198 (849)
Q Consensus 147 G~P~WL~~----~p~i~~R------------------------t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~ 198 (849)
-||.|+.+ +|+|.+- |--+.|.+.|+.|-..+.+.| .+|-|.-+
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--------~~g~I~eI 412 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--------VEGLITAV 412 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--------cCCceeEE
Confidence 38999975 5776431 111345555555555554433 24678888
Q ss_pred cc
Q 038226 199 QI 200 (849)
Q Consensus 199 QI 200 (849)
||
T Consensus 413 ~V 414 (681)
T PLN02705 413 EI 414 (681)
T ss_pred Ee
Confidence 87
No 19
>PLN02905 beta-amylase
Probab=97.66 E-value=0.00015 Score=84.79 Aligned_cols=111 Identities=22% Similarity=0.412 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC-----C
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG-----G 147 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G-----G 147 (849)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34567899999999999999999999998 899999995 555699999999995 5654 22332 222 3
Q ss_pred CCCccCc----CCCcccc------------------------cCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEec
Q 038226 148 FPVWLRD----IPGIEFR------------------------TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQ 199 (849)
Q Consensus 148 ~P~WL~~----~p~i~~R------------------------t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~Q 199 (849)
||.|+.+ +|+|.+- |--+.|.+.|+.|-..+.+.|. +|-|.-+|
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEE
Confidence 8999975 5776431 1123466666666555544442 35788888
Q ss_pred c
Q 038226 200 I 200 (849)
Q Consensus 200 I 200 (849)
|
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 7
No 20
>PLN02161 beta-amylase
Probab=97.66 E-value=0.00018 Score=82.77 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC-----
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG----- 146 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G----- 146 (849)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~I 189 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGGI 189 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccCc
Confidence 344567899999999999999999999998 899999995 555699999999995 4554 22322 222
Q ss_pred CCCCccCc----CCCccc
Q 038226 147 GFPVWLRD----IPGIEF 160 (849)
Q Consensus 147 G~P~WL~~----~p~i~~ 160 (849)
-||.|+.+ +|+|.+
T Consensus 190 pLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYY 207 (531)
T ss_pred cCCHHHHhhhccCCCceE
Confidence 28999975 577644
No 21
>PLN02801 beta-amylase
Probab=97.62 E-value=0.00017 Score=82.97 Aligned_cols=80 Identities=31% Similarity=0.507 Sum_probs=62.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC----
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG---- 146 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G---- 146 (849)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999997 699999995 455699999999995 5654 12322 112
Q ss_pred -CCCCccCc----CCCcc
Q 038226 147 -GFPVWLRD----IPGIE 159 (849)
Q Consensus 147 -G~P~WL~~----~p~i~ 159 (849)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 57763
No 22
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.62 E-value=0.0016 Score=71.51 Aligned_cols=224 Identities=19% Similarity=0.279 Sum_probs=113.1
Q ss_pred cceEE-ECCeEeEEEEEEecCC---CCCcccHHHHHHHHHHcCCCEEEEcee--cccc--------CCC----Ccceeec
Q 038226 51 HRAII-IDGNRRMLISAGIHYP---RATPEMWPDLIAKSKEGGADVIETYVF--WNAH--------ESI----RGQYNFK 112 (849)
Q Consensus 51 ~~~~~-idGk~~~l~sG~iHy~---R~~~~~W~d~l~k~Ka~GlN~I~tyvf--Wn~h--------Ep~----~G~ydF~ 112 (849)
++.|. -||+|||.++ .-.+. |...+.|+..|+..|+-|||+|++=++ |..+ .|- ++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 54443 778899999999999999999999776 4432 121 2236766
Q ss_pred Cc-----chHHHHHHHHHhcCCEEEEec---CcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 113 GK-----NDIVKFVKLVGSSGLYLQLRI---GPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 113 G~-----~dl~~fl~la~~~GL~viLR~---GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
.- ..|++.|+.|.+.||.+.|-| +||+-+-|-.| +.+ -=.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~~-------m~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PNI-------MPPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TTS-------S-HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------ccC-------CCHHHHHHHHHHHHHHHhc
Confidence 43 479999999999999976432 24433444333 111 0147789999999999986
Q ss_pred cccccccCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCccceEEec--cC-CCCc-----cc--cccCC-C
Q 038226 185 EMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMCK--QT-DAPE-----NI--IDACN-G 253 (849)
Q Consensus 185 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~--~~-~~p~-----~v--i~t~n-g 253 (849)
.+ +|| |=|-||+ . ......++.+.+.+..++.+-.- +++.- +. ..++ +- +..++ |
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 43 355 6688999 1 23356777777777777654322 33222 11 1111 11 11221 2
Q ss_pred cccC----------CCC-CCCCCCCeeeee-cCccccCccCCCCCCCChHHHHHHHHHHHhcCC
Q 038226 254 YYCD----------GYK-PNSYNKPTLWTE-NWDGWYTTWGGRLPHRPVEDLAFAVARFFQRGG 305 (849)
Q Consensus 254 ~~~~----------~f~-~~~p~~P~~~tE-~w~GWf~~wG~~~~~r~~ed~a~~v~~~~~~gg 305 (849)
.... .+. ...|.||.+..| -|.|--..+.+.....+++|+-..+=+-+-.||
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 1110 011 457899999999 445544333333345678888765544445555
No 23
>PLN02803 beta-amylase
Probab=97.59 E-value=0.00022 Score=82.34 Aligned_cols=80 Identities=23% Similarity=0.516 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC-----
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG----- 146 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G----- 146 (849)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344577899999999999999999999998 699999996 455599999999995 4654 12332 222
Q ss_pred CCCCccCc----CCCccc
Q 038226 147 GFPVWLRD----IPGIEF 160 (849)
Q Consensus 147 G~P~WL~~----~p~i~~ 160 (849)
-||.|+.+ +|+|.+
T Consensus 180 pLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 28999975 577643
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.55 E-value=0.00024 Score=82.30 Aligned_cols=81 Identities=22% Similarity=0.490 Sum_probs=63.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCC-CCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCC----
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHES-IRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFG---- 146 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~G---- 146 (849)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ |+.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455788999999999999999999999998 899999996 455599999999995 4654 22332 222
Q ss_pred -CCCCccCc----CCCccc
Q 038226 147 -GFPVWLRD----IPGIEF 160 (849)
Q Consensus 147 -G~P~WL~~----~p~i~~ 160 (849)
-||.|+.+ +|+|.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.12 E-value=0.00069 Score=76.69 Aligned_cols=112 Identities=20% Similarity=0.362 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEE--EecCcccccc----cCCCCCC
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQ--LRIGPYVCAE----WNFGGFP 149 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~vi--LR~GPYi~aE----w~~GG~P 149 (849)
.-+..|+++|++|++.|.+.|.|.+.|.. |++|||+| ..+++++|++.||++. +.+ --|+- .-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 34678999999999999999999999997 99999994 6667999999999964 543 12211 1111389
Q ss_pred CccCc---CCCccccc--------------CChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecc
Q 038226 150 VWLRD---IPGIEFRT--------------NNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQI 200 (849)
Q Consensus 150 ~WL~~---~p~i~~Rt--------------~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QI 200 (849)
.|+.+ ..+|.+.. .... ++.-..|++.+.+.+++ ++ +-|..+||
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 99974 12552211 0112 44445555555566653 22 56887877
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.00 E-value=0.00092 Score=74.39 Aligned_cols=156 Identities=15% Similarity=0.303 Sum_probs=108.4
Q ss_pred EEEEEecCCCCCcc-cHHHHHHHHHHcCCCEEEEc--eeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCccc
Q 038226 63 LISAGIHYPRATPE-MWPDLIAKSKEGGADVIETY--VFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 63 l~sG~iHy~R~~~~-~W~d~l~k~Ka~GlN~I~ty--vfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
.++..++..++..+ ..++.+ ..-+|.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ -|
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~----~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELF----AKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHH----HHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHHHH----HHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 78999998877554 444444 4458888874 6799999999999999 89999999999999874211 11
Q ss_pred ccccCCCCCCCccCcCCCcccccC-ChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccccccccc---------
Q 038226 140 CAEWNFGGFPVWLRDIPGIEFRTN-NAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMES--------- 209 (849)
Q Consensus 140 ~aEw~~GG~P~WL~~~p~i~~Rt~-~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~--------- 209 (849)
|.. ..|.|+...+.. ... -+.+++.++++++.++.+++.. |.|..|-|=||-=....
T Consensus 82 ---W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp ---ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred ---Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 433 789999875110 000 1248889999999998888631 78999999999643211
Q ss_pred ccCcccHHHHHHHHHHHHhcCCccceEEecc
Q 038226 210 SYGQQGKDYVKWAASMALGLGAGVPWVMCKQ 240 (849)
Q Consensus 210 ~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~~ 240 (849)
.|...|..|+..+-++|++..-++.++.++-
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 1112356799999999999888888888763
No 27
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.00 E-value=0.001 Score=66.17 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=51.8
Q ss_pred CccceEEEEEEeCCCCC--CceEEEeCCCC-ceEEEECCeeeeeeeeeccCCCCCCCCCCCCCCCCCCcCcCCCCCCcee
Q 038226 656 PSTFTWYKTYFDAPDGI--DPVALDLGSMG-KGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQT 732 (849)
Q Consensus 656 ~~~~twYkt~F~~p~g~--dpv~Ldl~gmg-KG~~wVNG~~IGRYW~~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q~ 732 (849)
.....|||++|++|+.. ..++|.+.|+. ...|||||+-||+... +-.-.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~----------------------------~~~~~ 117 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG----------------------------GYTPF 117 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES----------------------------TTS-E
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC----------------------------CcCCe
Confidence 34679999999999853 47899999866 8999999999998651 11234
Q ss_pred EEecCccccccCC-cEEEEE
Q 038226 733 WYHVPRSWLQASN-NLLVIF 751 (849)
Q Consensus 733 ~YhVPr~~Lk~g~-N~LVlf 751 (849)
-|-|+. .|++|+ |+|.|.
T Consensus 118 ~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 118 EFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EEECGG-GSSSEEEEEEEEE
T ss_pred EEeChh-hccCCCCEEEEEE
Confidence 577864 799888 998873
No 28
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.75 E-value=0.0066 Score=73.15 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCceEEEEEEeecCCCcccccccCCCCceEEeccccceEEEEECCEEEEEEEeee--EEEEeeeeecCCCc-EEEEEEe
Q 038226 509 DYSDYLWHITQIYVSDDDISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHW--VKVVQPVEFQSGYN-DLILLSQ 585 (849)
Q Consensus 509 d~sdYlwY~t~v~~~~~~~~~~~~~~~~~~L~v~~~~d~~~VfVNG~~vGs~~g~~--~~~~~~v~L~~G~n-~LslLse 585 (849)
+..|..||++++.++.. +.+....|++.++...+.|||||++||...+.. |.|++.-.|+.|.| +|+|.+.
T Consensus 62 ~~~G~~WYrr~f~lp~~------~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG------WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc------cCCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCchhccCCCceEEEEEEe
Confidence 34678999999998642 235678899999999999999999999988755 66665544777755 9999997
Q ss_pred cCCccc---cccCc-------------C-CCCcccccceEEcCc
Q 038226 586 TVGLQN---YGAFL-------------E-KDGAGFRGQVKLTGF 612 (849)
Q Consensus 586 ~~Gl~N---yG~~~-------------e-~~~kGI~G~V~L~g~ 612 (849)
+.-... .|.+. + ....||.++|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 642100 11110 0 246899999999543
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.012 Score=64.84 Aligned_cols=133 Identities=20% Similarity=0.306 Sum_probs=100.9
Q ss_pred HHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCC
Q 038226 85 SKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNN 164 (849)
Q Consensus 85 ~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~ 164 (849)
+|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+. -=+.| |.+ -.|.|+..+. -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 5666665666677799999999999999 66788999999999653 22222 544 7899987643 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccc-------cccCcccHHHHHHHHHHHHhcCCccceEE
Q 038226 165 APFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNME-------SSYGQQGKDYVKWAASMALGLGAGVPWVM 237 (849)
Q Consensus 165 ~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~ 237 (849)
++..+.|++++..++.+++. -++.|-|=||-=.-+ +.++..+.+|+++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYkg---------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYKG---------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhccC---------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 78999999999999999972 489999999963211 22324688999999999999877777777
Q ss_pred ecc
Q 038226 238 CKQ 240 (849)
Q Consensus 238 ~~~ 240 (849)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 663
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.71 E-value=0.0014 Score=76.38 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..|+++|+.||++|+|+-+.-+-|...+|. +|++|-+|-.-.+++|+.++++||..++-. ..-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 469999999999999999999999999999 699999999899999999999999977643 4667999998
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 154 DIPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 154 ~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
+.-|- .|+.+.+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74443 3466777777777777777764
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.66 E-value=0.0067 Score=67.89 Aligned_cols=143 Identities=16% Similarity=0.266 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCEEEEceeccccCCCC-cceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCC
Q 038226 79 PDLIAKSKEGGADVIETYVFWNAHESIR-GQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPG 157 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~ 157 (849)
.|.|+-+|+.|+|.||.=| | +.|.. |..|.+ +..+..+.|+++||.|+|-+- |- .-|.--|- ...|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCC----CCCCc
Confidence 5899999999999999977 4 45555 555555 666666677889999999863 21 11211110 00121
Q ss_pred cccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccc-cccCc--cc---HHHHHHHHHHHHhcCC
Q 038226 158 IEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNME-SSYGQ--QG---KDYVKWAASMALGLGA 231 (849)
Q Consensus 158 i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~-~~~~~--~~---~~Y~~~l~~~~~~~g~ 231 (849)
--.-.+-....+++..|++.+++.|+.+ |=.+=||||-||...-. +..+. .- .++++...+++|+.+-
T Consensus 95 aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p 168 (332)
T PF07745_consen 95 AWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP 168 (332)
T ss_dssp TCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC
Confidence 1001134567889999999999999864 44678999999975321 11221 11 2344444566666554
Q ss_pred ccc-eEEec
Q 038226 232 GVP-WVMCK 239 (849)
Q Consensus 232 ~vP-~~~~~ 239 (849)
++. .+++.
T Consensus 169 ~~kV~lH~~ 177 (332)
T PF07745_consen 169 NIKVMLHLA 177 (332)
T ss_dssp TSEEEEEES
T ss_pred CCcEEEEEC
Confidence 443 33444
No 32
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.65 E-value=0.0055 Score=78.04 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=69.5
Q ss_pred ceEEEEEEeecCCCcccccccCCCCceEEeccccceEEEEECCEEEEEEEeee--EEEEeeeeecCCCcEEEEEEecCCc
Q 038226 512 DYLWHITQIYVSDDDISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHW--VKVVQPVEFQSGYNDLILLSQTVGL 589 (849)
Q Consensus 512 dYlwY~t~v~~~~~~~~~~~~~~~~~~L~v~~~~d~~~VfVNG~~vGs~~g~~--~~~~~~v~L~~G~n~LslLse~~Gl 589 (849)
+-.||++++.++.+ +.+....|++.++...+.|||||++||...+.. |.|++.--|+.|.|+|+|.|....-
T Consensus 109 ~~g~Yrr~F~lp~~------~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDG------WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCcc------cccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcchhhCCCccEEEEEEEecCC
Confidence 46799999998653 235678899999999999999999999987754 6666654578899999999974322
Q ss_pred cccccCcC----CCCcccccceEEcCc
Q 038226 590 QNYGAFLE----KDGAGFRGQVKLTGF 612 (849)
Q Consensus 590 ~NyG~~~e----~~~kGI~G~V~L~g~ 612 (849)
|.+++ .+..||.++|.|...
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 22232 235899999999654
No 33
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=96.63 E-value=0.00094 Score=59.17 Aligned_cols=41 Identities=41% Similarity=0.721 Sum_probs=31.3
Q ss_pred eeCCCCCeEeEEEeeeeCCCcc-ccccccccc---ccCCccccccc
Q 038226 807 LHCQDGYIISSIEFASYGTPQG-RCQKFSRGN---CHAPMSLSVVS 848 (849)
Q Consensus 807 l~C~~g~~is~i~fAsfG~p~G-~Cg~f~~g~---c~a~~s~~~v~ 848 (849)
|+|++| .+..|.+|+||.+.+ .|++...+. |++++++++|+
T Consensus 1 L~C~~g-~~I~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~ 45 (80)
T PF02140_consen 1 LSCPPG-KVISIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVK 45 (80)
T ss_dssp EE-STT-EEEEEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHH
T ss_pred CCCcCC-CEEEEEEeecCCCCCCCCcCCCcCCCCccccccccchhH
Confidence 799999 788999999999998 998666664 99999998886
No 34
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.019 Score=62.35 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHH---hcCCEEEEecCcccccccCCCCCCCccCc-
Q 038226 79 PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVG---SSGLYLQLRIGPYVCAEWNFGGFPVWLRD- 154 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~viLR~GPYi~aEw~~GG~P~WL~~- 154 (849)
.|.|+-+|+.|+|-|++=| ||..--..|+=.=.|+.|+.+.|++|+ ..||+|+|-+= +-.|..+
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaDP 133 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWADP 133 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccCh
Confidence 6899999999999999854 666544555544567899999999886 47999999861 1111111
Q ss_pred ----CCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccc-cccccCc
Q 038226 155 ----IPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGN-MESSYGQ 213 (849)
Q Consensus 155 ----~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~-~~~~~~~ 213 (849)
.|.--.--+-+.-++++-.|++..+..|++++. -+=||||.||-.+ +-+..|+
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCC
Confidence 222112234456788899999999999997654 4569999999743 3333343
No 35
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.35 E-value=0.01 Score=75.54 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=67.5
Q ss_pred CceEEEEEEeecCCCcccccccCCC-CceEEeccccceEEEEECCEEEEEEEeee--EEEEeeeeecCCCcEEEEEEecC
Q 038226 511 SDYLWHITQIYVSDDDISFWKTNEV-RPTVTIDSMRDVLRVFINGQLTGSVIGHW--VKVVQPVEFQSGYNDLILLSQTV 587 (849)
Q Consensus 511 sdYlwY~t~v~~~~~~~~~~~~~~~-~~~L~v~~~~d~~~VfVNG~~vGs~~g~~--~~~~~~v~L~~G~n~LslLse~~ 587 (849)
-+-.||++++.++.+- .+. +..|++.++...+.|||||++||...+.. |.|++.-.|+.|.|+|+|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w------~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW------LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh------cCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcCCccEEEEEEEec
Confidence 3568999999986521 122 57899999999999999999999887755 66666545788999999988432
Q ss_pred CccccccCcCC----CCcccccceEEcCc
Q 038226 588 GLQNYGAFLEK----DGAGFRGQVKLTGF 612 (849)
Q Consensus 588 Gl~NyG~~~e~----~~kGI~G~V~L~g~ 612 (849)
- .|.+++. +..||..+|.|.-.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 1222221 34799999998543
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.24 E-value=0.01 Score=69.56 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..|+++|+.||++|+|+-++-+-|....|. +|++|-+|-...+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999996 567888888899999999999999977653 2446899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 154 DI-PGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 154 ~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
+. -|- .|+...++..+|.+.+++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 64 453 3556666666676666666654
No 37
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.014 Score=67.12 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=72.8
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEceeccccCCCC--cceee--cCcchHHHHHHHHHhcCCEEEEecCcccccccC
Q 038226 74 TPEMW-----PDLIAKSKEGGADVIETYVFWNAHESIR--GQYNF--KGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWN 144 (849)
Q Consensus 74 ~~~~W-----~d~l~k~Ka~GlN~I~tyvfWn~hEp~~--G~ydF--~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~ 144 (849)
...-| ++.+..||.+|||+||+++.|..+++.. .-|-. .--.-|++.|+.|++.||+|+|-.-=|-+. .
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~--~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG--N 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC--C
Confidence 45567 8999999999999999999955546643 22222 111278899999999999999973211000 0
Q ss_pred CCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccc
Q 038226 145 FGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGN 206 (849)
Q Consensus 145 ~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~ 206 (849)
++-=..|....-. ...+..++..+.++.|+.++++ .-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYK-----EENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred CCcCccccccccc-----ccchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 0001122221100 1233444455555556666553 457999999999974
No 38
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.18 E-value=0.011 Score=69.37 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..|+++|+.||++|+|+.++-+-|...+|. +++.|-+|-.-.+++|+.+.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 556777788889999999999999977553 3456899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 154 DI-PGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 154 ~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
+. -|- .|+...++..+|.+.+++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fgd 170 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFDG 170 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhcC
Confidence 63 443 3455555555555555555543
No 39
>PLN02849 beta-glucosidase
Probab=96.00 E-value=0.025 Score=66.81 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|+-++=+-|...+|. .|++|=+|-..-+++|+.+.++||.-++-. ..=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 477888888899999999999999865543 23358999987
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 155 I-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 155 ~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
. -|-.=|..-..|.++++..++++.+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222223455555555555555554
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.79 E-value=0.023 Score=66.62 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|+-++-+-|...+|. .|.+|-+|-..-+++|+.+.++||.-++-. ..=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 357999999999999999999999999996 578888899999999999999999865543 23358999987
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHH
Q 038226 155 IPGIEFRTNNAPFKEEMQRFVKKIVDLM 182 (849)
Q Consensus 155 ~p~i~~Rt~~~~f~~~~~~~~~~i~~~~ 182 (849)
.-|- .|+...++..+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 6553 34444444444444444444
No 41
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.67 E-value=0.029 Score=65.80 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|+-++=+-|...+|. +|++|=+|-.--+++|+.+.++||.-++-. ..=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 678888888899999999999999866553 23358999987
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 155 IPGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 155 ~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
.-|- .|+...++-.+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 6553 345555555666666665554
No 42
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.62 E-value=0.14 Score=52.04 Aligned_cols=134 Identities=11% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeccccC-----CC---CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccc
Q 038226 71 PRATPEMWPDLIAKSKEGGADVIETYVFWNAHE-----SI---RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAE 142 (849)
Q Consensus 71 ~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hE-----p~---~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aE 142 (849)
-.++++.|+.+++.||+.|+|+|=+= |...+ |. ++.|.-....-|+.+|++|++.||.|++..+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 47799999999999999999998431 22111 11 2233334455899999999999999998753 1
Q ss_pred cCCCCCCCccCcCCCcccccCChhHH-HHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHHH
Q 038226 143 WNFGGFPVWLRDIPGIEFRTNNAPFK-EEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKW 221 (849)
Q Consensus 143 w~~GG~P~WL~~~p~i~~Rt~~~~f~-~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~ 221 (849)
-|.|... .|.... +.-++...+|..+.. +....=+|=|=.|..... ....++.+-
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1233321 222221 111223333433333 333667888888887542 234555666
Q ss_pred HHHHHHhcCCccce
Q 038226 222 AASMALGLGAGVPW 235 (849)
Q Consensus 222 l~~~~~~~g~~vP~ 235 (849)
|.+.+++.--+-|.
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 66655554334453
No 43
>PLN02998 beta-glucosidase
Probab=95.44 E-value=0.015 Score=68.68 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|+-++=|-|...+|. .|.+|-+|-.--+++|+.+.++||..++-. -.=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 677888899999999999999999865443 13348999987
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 155 I-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 155 ~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
. -|-.=|..=..|.++++.-++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222223455555555555555554
No 44
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.44 E-value=0.018 Score=67.57 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..|+++|+.||++|+|+-++=+-|...+|. +|++|=+|-.--+++|+.+.++||..++-. -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888888899999999999999865543 2335899998
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 154 DI-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 154 ~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
+. -|-.=|..=..|.++++.-++++.++++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 5542222223455555555555555554
No 45
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=95.30 E-value=0.16 Score=59.97 Aligned_cols=334 Identities=16% Similarity=0.262 Sum_probs=156.9
Q ss_pred eEeEEEEEEecC------CCCCcccHHHHHHHH---HHcCCCEEEEcee---ccccC----CCCccee---ecC-c---c
Q 038226 59 NRRMLISAGIHY------PRATPEMWPDLIAKS---KEGGADVIETYVF---WNAHE----SIRGQYN---FKG-K---N 115 (849)
Q Consensus 59 k~~~l~sG~iHy------~R~~~~~W~d~l~k~---Ka~GlN~I~tyvf---Wn~hE----p~~G~yd---F~G-~---~ 115 (849)
|++.=|+|++=- .+.+++.=+++|+.+ +-+|++.+|+.+- ...++ ..|+.|+ |+= + .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 566668888732 234444333334333 4579999998775 12111 1233222 221 1 1
Q ss_pred hHHHHHHHHHhc--CCEEEEecCcccccccCCCCCCCccCcCCCc----ccc-cCChhHHHHHHHHHHHHHHHHHhcccc
Q 038226 116 DIVKFVKLVGSS--GLYLQLRIGPYVCAEWNFGGFPVWLRDIPGI----EFR-TNNAPFKEEMQRFVKKIVDLMREEMLF 188 (849)
Q Consensus 116 dl~~fl~la~~~--GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i----~~R-t~~~~f~~~~~~~~~~i~~~~~~~~l~ 188 (849)
.+..+|+.|++. +|+++.-| |. .|.|+.....+ .++ ...+.|.++...|+.+.++.++++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~--- 220 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE--- 220 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT---
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC---
Confidence 234678877763 57887776 65 79999864332 244 234578888889999988888854
Q ss_pred cccCCcEEEecccccccccc---cccCc------ccHHHHH-HHHHHHHhcCC--ccceEEeccC--CCCc---ccccc-
Q 038226 189 SWQGGPIIMLQIENEYGNME---SSYGQ------QGKDYVK-WAASMALGLGA--GVPWVMCKQT--DAPE---NIIDA- 250 (849)
Q Consensus 189 ~~~gGpII~~QIENEyg~~~---~~~~~------~~~~Y~~-~l~~~~~~~g~--~vP~~~~~~~--~~p~---~vi~t- 250 (849)
|=||=++-+-||..... ..|.. ..+.|++ .|.-+.++.++ +|-+++.+.. +.|+ .+++-
T Consensus 221 ---GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 221 ---GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp ---T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred ---CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 44899999999987421 01111 2345664 36667777766 6766666532 2332 22211
Q ss_pred ----C---CCccc--C-CCC-------CCCCCCCeeeeecCccccCccCCCCCC---CChHHHHHHHHHHHhcCCcceee
Q 038226 251 ----C---NGYYC--D-GYK-------PNSYNKPTLWTENWDGWYTTWGGRLPH---RPVEDLAFAVARFFQRGGSFMNY 310 (849)
Q Consensus 251 ----~---ng~~~--~-~f~-------~~~p~~P~~~tE~w~GWf~~wG~~~~~---r~~ed~a~~v~~~~~~ggs~~Ny 310 (849)
+ -+++| + ... ...|++..+.||...|.- .|+..... ..++..+..+..-+..+.+ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 1 13455 1 111 236889999999876531 12211111 1133444444444444432 22
Q ss_pred eee------eccCCCCCCC-CCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccccccccccccCCcccc
Q 038226 311 YMY------FGGTNFGRTS-GGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPALVAADSAQYIKLGQNQEA 383 (849)
Q Consensus 311 YM~------hGGTNfG~~~-g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l~~~~~~l~~~~~~~~~~lg~~~~a 383 (849)
-++ .||-|++... .++.++.. +. +|. .++|.|++|..+.+|++..+..+.... ..-....++
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~PGa~RI~st~----~~~~~~l~~ 443 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRPGAVRIGSTS----SSSDSGLEA 443 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-TT-EEEEEEE----SSSTTTEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCCCCEEEEeec----cCCCCceeE
Confidence 222 4888875432 22322111 11 222 358999999999999886444332110 000112444
Q ss_pred eEeeecccCCCcceeeeecccccCcc-eEEEEcC-------eeeecCCCce
Q 038226 384 HVYRANRYGSQSNCSAFLANIDEHTA-ASVTFLG-------QSYTLPPWSV 426 (849)
Q Consensus 384 ~vy~~~~~~~~~~~~aFl~N~~~~~~-~~v~f~~-------~~y~lp~~sv 426 (849)
..|. ...+.-+.-+.|-.+... .+|++++ -.+.|||.|+
T Consensus 444 vAF~----nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 444 VAFL----NPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEE----ETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEE----CCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 4454 333444555555443222 2466643 2466777654
No 46
>PLN02814 beta-glucosidase
Probab=95.25 E-value=0.017 Score=68.15 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
..|+++|+.||++|+|+-++=+-|...+|. +|++|-+|-.--+++|+.+.++||.-++-. -.=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866543 12247999987
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 155 I-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 155 ~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
. -|- .|+...++-.+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 553 234444444444444444443
No 47
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.20 E-value=0.021 Score=67.12 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..|+++|+.||++|+|+-++-|-|...+|. +|++|=+|-.--+++|+.+.++||.-++-. ..=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 566888888899999999999999866543 2335899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 154 DI-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 154 ~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
+. -|-.=|..-..|.++++.-++++.+++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 5542222223455555555555555554
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.63 E-value=0.16 Score=49.77 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCEEEEcee-------c--cccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCC
Q 038226 80 DLIAKSKEGGADVIETYVF-------W--NAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPV 150 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~tyvf-------W--n~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~ 150 (849)
+.++.+|++|.|+|.++.- | ..|.+.|+- ++.-|..++++|++.||.|+.|.-.- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4577899999999998432 2 345555543 22356899999999999999998654 44555556799
Q ss_pred ccCcCCCcc-------------cccCChhHHHHHHHHHHHHHHHHH
Q 038226 151 WLRDIPGIE-------------FRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 151 WL~~~p~i~-------------~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
|+..+++=+ .-..|.+|++.+.+-+++|++.+.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 997643211 112356788888888888877664
No 49
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.21 E-value=0.12 Score=59.93 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCCcc--eeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIRGQ--YNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~--ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
..++++|+.||++|+|+.++-|-|...-|..+. .+=.|-...++.|+.|.++|+.-++-. ..=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 357899999999999999999999999996655 888888889999999999999966543 2334799999
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 154 DI-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 154 ~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
+. -|= .|..-.++-.+|.+.++++++
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 85 454 233444455555555555554
No 50
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.14 E-value=11 Score=43.53 Aligned_cols=246 Identities=15% Similarity=0.183 Sum_probs=126.6
Q ss_pred CCCCCcccHHHHHHHHHHcCCCEEEE-------ceeccccCCCCcceeec-CcchHHHHHHHHHhcCCEEEEecCccccc
Q 038226 70 YPRATPEMWPDLIAKSKEGGADVIET-------YVFWNAHESIRGQYNFK-GKNDIVKFVKLVGSSGLYLQLRIGPYVCA 141 (849)
Q Consensus 70 y~R~~~~~W~d~l~k~Ka~GlN~I~t-------yvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~viLR~GPYi~a 141 (849)
+.+..++.| ++.+|++|+.-|=. +-.|...-..-..-+-. ++--|..|.+.|+++||.+-+ |.-.
T Consensus 78 p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~ 150 (384)
T smart00812 78 AEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSL 150 (384)
T ss_pred chhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCH
Confidence 334556666 45788899986542 22355443211111111 233456788999999997665 5443
Q ss_pred -ccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHH
Q 038226 142 -EWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVK 220 (849)
Q Consensus 142 -Ew~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~ 220 (849)
+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--.+
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~ 213 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSK 213 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHH
Confidence 6764 5443221111233456778888877877777777532 2334442 2111110 1111134
Q ss_pred HHHHHHHhcCCcc-ceEEeccCCCCccccccCCCc--cc-CCCCCCCC-CCCeeee-ecCccccCccCC-CCCCCChHHH
Q 038226 221 WAASMALGLGAGV-PWVMCKQTDAPENIIDACNGY--YC-DGYKPNSY-NKPTLWT-ENWDGWYTTWGG-RLPHRPVEDL 293 (849)
Q Consensus 221 ~l~~~~~~~g~~v-P~~~~~~~~~p~~vi~t~ng~--~~-~~f~~~~p-~~P~~~t-E~w~GWf~~wG~-~~~~r~~ed~ 293 (849)
.+.++++++.-+. -.++++... ... +. .|. .+ +...+... ..|--.. =.-.+|+=+-++ ....++++++
T Consensus 214 ~l~~~~~~~qP~~~~vvvn~R~~-~~~--~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~l 289 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVVNDRWG-GTG--CK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKEL 289 (384)
T ss_pred HHHHHHHHhCCCCceEEEEcccc-ccC--CC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHH
Confidence 5666666654332 113333211 000 00 011 11 22222111 1111000 011245544443 2346799999
Q ss_pred HHHHHHHHhcCCcceeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccc
Q 038226 294 AFAVARFFQRGGSFMNYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEPALVA 368 (849)
Q Consensus 294 a~~v~~~~~~ggs~~NyYM~hGGTNfG~~~g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l~~~~~~l~~ 368 (849)
...+.+...+||+++ .+ -+-+.+|.+.+..-..|+++.+.++...+++-.
T Consensus 290 i~~l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~ 339 (384)
T smart00812 290 IRDLVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAIYG 339 (384)
T ss_pred HHHHhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCceeec
Confidence 999999999999842 11 134567888777888999999999976655443
No 51
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.72 E-value=2.9 Score=45.27 Aligned_cols=127 Identities=17% Similarity=0.296 Sum_probs=76.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCccC
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~WL~ 153 (849)
..-|++.|+.+++.|++.|++-+ +.. ...++..+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999943 222 2223344554 3578899999999999875 44321 11111
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcc-------cHHHHHHHHHHH
Q 038226 154 DIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQ-------GKDYVKWAASMA 226 (849)
Q Consensus 154 ~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~-------~~~Y~~~l~~~~ 226 (849)
+-..|+.-+++..+.+++.++..+. + |.++|.+-- .++. ++.. -.+.++.+.++|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~-~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLAG-YDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEecC-cccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 1223566666666777777777763 3 567765421 1110 1111 225566677778
Q ss_pred HhcCCcc
Q 038226 227 LGLGAGV 233 (849)
Q Consensus 227 ~~~g~~v 233 (849)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7777754
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=90.59 E-value=3 Score=50.76 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=44.8
Q ss_pred EecCCCCCc-ccHHHHH----HHHHHcCCCEEEE-ceeccccC----CCCcc-----eeecCcchHHHHHHHHHhcCCEE
Q 038226 67 GIHYPRATP-EMWPDLI----AKSKEGGADVIET-YVFWNAHE----SIRGQ-----YNFKGKNDIVKFVKLVGSSGLYL 131 (849)
Q Consensus 67 ~iHy~R~~~-~~W~d~l----~k~Ka~GlN~I~t-yvfWn~hE----p~~G~-----ydF~G~~dl~~fl~la~~~GL~v 131 (849)
|+|.--..+ --++..+ .-+|++|+|+|++ .|+..-.. -.+-. =.|.+..||.+|++.|+++||.|
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V 222 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV 222 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE
Confidence 666543322 2354433 5569999999998 67653211 01100 13455679999999999999999
Q ss_pred EEec
Q 038226 132 QLRI 135 (849)
Q Consensus 132 iLR~ 135 (849)
||-.
T Consensus 223 ilD~ 226 (613)
T TIGR01515 223 ILDW 226 (613)
T ss_pred EEEe
Confidence 9875
No 53
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=89.83 E-value=2.5 Score=49.95 Aligned_cols=187 Identities=21% Similarity=0.364 Sum_probs=113.2
Q ss_pred ceEEECCeEeEEEEEEecCC-----CCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHh
Q 038226 52 RAIIIDGNRRMLISAGIHYP-----RATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGS 126 (849)
Q Consensus 52 ~~~~idGk~~~l~sG~iHy~-----R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~ 126 (849)
..|.|||.|.++.++.--+. |.+-+.-+-+|+.++++|+|++++ |.. |.+.=+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhh
Confidence 46889999999988876543 455666777899999999999998 332 23345799999999
Q ss_pred cCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecc--cccc
Q 038226 127 SGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQI--ENEY 204 (849)
Q Consensus 127 ~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QI--ENEy 204 (849)
.||.|---. =|.||=. ..|+.|+..++.=++.=+.+++.|+ .||.+-= |||=
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHH
Confidence 999774221 1233322 2467899888887777777776544 5776654 4443
Q ss_pred cccccccCc-------ccHH----HHHHHHHHHHhcCCccceEEeccCCC----Ccccc-----ccCCCc---cc---CC
Q 038226 205 GNMESSYGQ-------QGKD----YVKWAASMALGLGAGVPWVMCKQTDA----PENII-----DACNGY---YC---DG 258 (849)
Q Consensus 205 g~~~~~~~~-------~~~~----Y~~~l~~~~~~~g~~vP~~~~~~~~~----p~~vi-----~t~ng~---~~---~~ 258 (849)
.-.+..|+. .-+. |.+-+++++....-..|.+|.-.+.. |+.-+ +..||. |. |-
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPsNG~ete~e~~VS~NP~dn~~GDVHfYdy~~d~ 527 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPSNGKETEPENYVSSNPQDNQNGDVHFYDYTKDG 527 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCCCCcccCccccccCCCccccCCceEeeehhhcc
Confidence 222212321 1233 33445566665556679888654321 11111 111231 11 34
Q ss_pred CCCCCCCCCeeeeecCccccCcc
Q 038226 259 YKPNSYNKPTLWTENWDGWYTTW 281 (849)
Q Consensus 259 f~~~~p~~P~~~tE~w~GWf~~w 281 (849)
|.+.---+|.+.+||- |+.|
T Consensus 528 W~~~ifp~pRfaSEyG---~QS~ 547 (867)
T KOG2230|consen 528 WDPGIFPRPRFASEYG---FQSF 547 (867)
T ss_pred CCCCcccCchhhhhcC---cccC
Confidence 4444445799999974 4544
No 54
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.39 E-value=0.26 Score=56.99 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=109.0
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceecccc-CCC---Ccceee-cCcchHHHHHHHHHhc
Q 038226 53 AIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAH-ESI---RGQYNF-KGKNDIVKFVKLVGSS 127 (849)
Q Consensus 53 ~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~h-Ep~---~G~ydF-~G~~dl~~fl~la~~~ 127 (849)
.|.++++++-.++..--++++-.++-+++|+-|+.+|++++++. .+- |+- +|.-+- +|..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888888877777778877788889999999999999985 344 552 332222 2345789999999999
Q ss_pred CCEEEEecCcccccccCCCCCC---CccCc-CCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccc
Q 038226 128 GLYLQLRIGPYVCAEWNFGGFP---VWLRD-IPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENE 203 (849)
Q Consensus 128 GL~viLR~GPYi~aEw~~GG~P---~WL~~-~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENE 203 (849)
+|.|+++. |.+-=.+||.- .|--. .|+-.. .|+.++..-++|+..+++-+|.+ ..|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~~-------ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKLD-------PTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhccC-------hHHHHHHhcCC
Confidence 99998774 44433456643 24422 232111 36777777788888888766543 47888999999
Q ss_pred ccccccccCcccHHHHHHHHHHHH
Q 038226 204 YGNMESSYGQQGKDYVKWAASMAL 227 (849)
Q Consensus 204 yg~~~~~~~~~~~~Y~~~l~~~~~ 227 (849)
.=. .-...+..+++|+++|+-
T Consensus 148 ~lv---~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 PLV---EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred ccc---cccCChhHHHHHHHHHHH
Confidence 321 112357899999999974
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=89.31 E-value=1.5 Score=48.84 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=71.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceecc-------ccCCCC-------cceeecCcchHHHHHHHHHhcCCEEEEecCccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWN-------AHESIR-------GQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn-------~hEp~~-------G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
.++.-++.|+++|++|+|+|=.=|.+. -.+|.. |+ + -|.--|..+|+.|++.||.|+.++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 567788899999999999997655442 222321 11 1 122379999999999999999776 111
Q ss_pred ccccCC----CCCCCccC-cCCCccccc----CCh----hHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccc
Q 038226 140 CAEWNF----GGFPVWLR-DIPGIEFRT----NNA----PFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIEN 202 (849)
Q Consensus 140 ~aEw~~----GG~P~WL~-~~p~i~~Rt----~~~----~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIEN 202 (849)
...-.. -.-|.|+. +.++..... .+. |-..+++.|+..++..+... . +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~-Y------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKN-Y------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhc-C------CCCeEEecc
Confidence 110111 12478875 456533322 111 23467777777766665431 1 366778873
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.94 E-value=4.5 Score=50.29 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHHHcCCCEEEE-ceecc----ccCCCCcce-----eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 83 AKSKEGGADVIET-YVFWN----AHESIRGQY-----NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 83 ~k~Ka~GlN~I~t-yvfWn----~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.-+|++|+|+|+. .|+=. .|-..+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5569999999997 45410 111111111 24556799999999999999999874
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=87.91 E-value=1.2 Score=45.04 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCCEEEEceecccc-------CCCCcce-----eecCcchHHHHHHHHHhcCCEEEEecCccccc
Q 038226 78 WPDLIAKSKEGGADVIETYVFWNAH-------ESIRGQY-----NFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCA 141 (849)
Q Consensus 78 W~d~l~k~Ka~GlN~I~tyvfWn~h-------Ep~~G~y-----dF~G~~dl~~fl~la~~~GL~viLR~GPYi~a 141 (849)
+.+.|.-+|++|+|+|.+-=++..- .-.+..| .|....||.++++.|+++||.||+-.=|-=++
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 3445556999999999974332211 1122222 45566899999999999999999887443333
No 58
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.86 E-value=8.5 Score=41.42 Aligned_cols=130 Identities=21% Similarity=0.315 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCccCcC
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVWLRDI 155 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~WL~~~ 155 (849)
-|++.|+.++++|++.|++.+. ..|+ .....+|+ ..++..+-++++++||.+. +.++ +.-.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~---- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF---- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc----
Confidence 6999999999999999999632 2222 01112332 3478999999999999875 3322 11000
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccc--cccCcccHHHHHHHHHHHHhcCCcc
Q 038226 156 PGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNME--SSYGQQGKDYVKWAASMALGLGAGV 233 (849)
Q Consensus 156 p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~--~~~~~~~~~Y~~~l~~~~~~~g~~v 233 (849)
.+.+.|+..+++..+.++++++..+. | |.+.|-+---..+.... ..+ ..-.+.++.+.++|++.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCEE
Confidence 13345666666666677777777663 3 55666542100000000 000 012356778888888887754
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.47 E-value=8.8 Score=47.12 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEE-cee-------cccc-----CCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 82 IAKSKEGGADVIET-YVF-------WNAH-----ESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 82 l~k~Ka~GlN~I~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.-+|++|+|+|+. .|. |... .|.+ .|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35589999999996 231 4321 1111 23455799999999999999999874
No 60
>PRK09936 hypothetical protein; Provisional
Probab=85.63 E-value=1.6 Score=47.99 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=46.4
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCc-chHHHHHHHHHhcCCEEEEe
Q 038226 72 RATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGK-NDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 72 R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~-~dl~~fl~la~~~GL~viLR 134 (849)
+++++.|+.+++.+|+.|++++= |=|..-- .=||.|. -.|.+-++.|++.||.|++.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG----~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRYG----DADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeecc----CCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 67999999999999999999874 4454431 1188765 48999999999999999874
No 61
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.18 E-value=3.1 Score=42.00 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccc
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFR 161 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~R 161 (849)
|+.++++|++.|+............ ..+++++.++++++||.+..--.+ . .+. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~--~~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-T--NFW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-E--SSS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-c--ccc----------ccccccc
Confidence 6789999999999965433222211 347899999999999996532111 1 010 1111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccc--ccccccc--cccCcccHHHHHHHHHHHHhcCCcc
Q 038226 162 TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIE--NEYGNME--SSYGQQGKDYVKWAASMALGLGAGV 233 (849)
Q Consensus 162 t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIE--NEyg~~~--~~~~~~~~~Y~~~l~~~~~~~g~~v 233 (849)
+.+++ ++...+.+++.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 77777788888888874 3 5677777743 1111110 000 123456677777787777653
No 62
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.89 E-value=4.1 Score=45.67 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=71.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-------ceeccccCCCCcceeec-C-cchHHHHHHHHHhcCCEEEEecCcccccccC
Q 038226 74 TPEMWPDLIAKSKEGGADVIET-------YVFWNAHESIRGQYNFK-G-KNDIVKFVKLVGSSGLYLQLRIGPYVCAEWN 144 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~t-------yvfWn~hEp~~G~ydF~-G-~~dl~~fl~la~~~GL~viLR~GPYi~aEw~ 144 (849)
.++.-+..|+.+|+.|+|+|-+ .|.+..-.|..-+..-. . ..|+.++++.++++|+|+|.|+=-|=- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 3456788999999999998875 35565555544333222 2 269999999999999999999832210 000
Q ss_pred CCCCCCccCc-CCCcccccCC-----hhHHHHHHHHHHHHHHHHHhc
Q 038226 145 FGGFPVWLRD-IPGIEFRTNN-----APFKEEMQRFVKKIVDLMREE 185 (849)
Q Consensus 145 ~GG~P~WL~~-~p~i~~Rt~~-----~~f~~~~~~~~~~i~~~~~~~ 185 (849)
..--|.|-.+ ..|-..|..+ .||.+++.+|.-.|++..+..
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 1113555542 2221233221 268899999999999998864
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.87 E-value=1.7 Score=51.10 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=42.6
Q ss_pred cccHHHH---HHHHHHcCCCEEEE-ceeccc-----cCCCCcce--------------eecCcchHHHHHHHHHhcCCEE
Q 038226 75 PEMWPDL---IAKSKEGGADVIET-YVFWNA-----HESIRGQY--------------NFKGKNDIVKFVKLVGSSGLYL 131 (849)
Q Consensus 75 ~~~W~d~---l~k~Ka~GlN~I~t-yvfWn~-----hEp~~G~y--------------dF~G~~dl~~fl~la~~~GL~v 131 (849)
.+.|..+ |.-+|++|+++|.+ .+|-+. |--.+--| .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 3567654 55569999999997 455432 33222222 2445679999999999999999
Q ss_pred EEec
Q 038226 132 QLRI 135 (849)
Q Consensus 132 iLR~ 135 (849)
||-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9875
No 64
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=81.85 E-value=12 Score=40.34 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhc-CCEEEEecCcccccccCCCCCCCccCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSS-GLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~-GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
.-|++.|+.+|++|++.|++-+........ ......++..+.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 679999999999999999987643211111 111346899999999999 6665442 2321
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccc
Q 038226 155 IPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIE 201 (849)
Q Consensus 155 ~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIE 201 (849)
..+...++.-+++.-..+++.++..+. | |-+.|.+...
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g 107 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPG 107 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCC
Confidence 012233444445555555666666653 3 4456666554
No 65
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=81.78 E-value=5.7 Score=47.00 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred EEecCCCCCcccHHHHHHHHH-HcCCCEEEEc-ee---cc-ccC-CCCc--ceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 66 AGIHYPRATPEMWPDLIAKSK-EGGADVIETY-VF---WN-AHE-SIRG--QYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 66 G~iHy~R~~~~~W~d~l~k~K-a~GlN~I~ty-vf---Wn-~hE-p~~G--~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
|+=|.--..++.|...|+.++ +.|+..|++- +| .. ..| ...| .|||+ .|+.+++...++||.-.+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 444444567788999998886 7899999873 22 11 111 1223 39999 999999999999999877765
Q ss_pred cccccccCCCCCCCccCcCCCcccc--------cCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccc
Q 038226 137 PYVCAEWNFGGFPVWLRDIPGIEFR--------TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGN 206 (849)
Q Consensus 137 PYi~aEw~~GG~P~WL~~~p~i~~R--------t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~ 206 (849)
- .|.++...+...++ .+...+.+-++++++.+++++..+.+ .. =.+.|=||...
T Consensus 106 f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev--~~----W~fEiWNEPd~ 167 (486)
T PF01229_consen 106 F----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEV--ST----WYFEIWNEPDL 167 (486)
T ss_dssp S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHH--TT----SEEEESS-TTS
T ss_pred e----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccc--cc----eeEEeCcCCCc
Confidence 2 34444332221222 12234445555555555544432211 11 14578899764
No 66
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=81.64 E-value=4.3 Score=41.29 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=31.8
Q ss_pred ceEEeccccceEEEEECCEEEEEEE---e-ee-------EEEEeeeeecCCCcEEEEEEecCCc
Q 038226 537 PTVTIDSMRDVLRVFINGQLTGSVI---G-HW-------VKVVQPVEFQSGYNDLILLSQTVGL 589 (849)
Q Consensus 537 ~~L~v~~~~d~~~VfVNG~~vGs~~---g-~~-------~~~~~~v~L~~G~n~LslLse~~Gl 589 (849)
..|.|... ....+||||+.||... + +. -+++..--|+.|.|.|.+++-+-..
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 46777555 4778999999999755 1 11 3555443488899999999876443
No 67
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.21 E-value=21 Score=44.49 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEE-cee-------ccc-----cCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 81 LIAKSKEGGADVIET-YVF-------WNA-----HESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
.|.-+|++|+|+|+. .|+ |.+ ..|.+ .|....||.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456679999999996 342 432 11211 3555679999999999999999987544
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.19 E-value=22 Score=46.78 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCEEEE-cee-------cccc-----CCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 81 LIAKSKEGGADVIET-YVF-------WNAH-----ESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.|.-+|++|+|+|+. .|+ |.+. .|.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 467789999999996 342 4321 1111 34556799999999999999999874
No 69
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=81.12 E-value=14 Score=40.00 Aligned_cols=125 Identities=19% Similarity=0.332 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCccCcC
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVWLRDI 155 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~WL~~~ 155 (849)
-|++.++.++++|++.|+..+. ..++ ....++++ ..++..+.++++++||.+. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999532 1111 01112332 2368899999999999875 332210 0011
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCc-------ccHHHHHHHHHHHHh
Q 038226 156 PGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQ-------QGKDYVKWAASMALG 228 (849)
Q Consensus 156 p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~Y~~~l~~~~~~ 228 (849)
+-+.++.-++...+.+++.++..+. | |.+.|.+. |.. ..++. .-.+.++.|.++|++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1234566667777777777777763 3 56776542 110 00111 113466778888888
Q ss_pred cCCcc
Q 038226 229 LGAGV 233 (849)
Q Consensus 229 ~g~~v 233 (849)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 70
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=80.81 E-value=27 Score=43.77 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------cccc-----CCCCcceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 76 EMWPDLIAKSKEGGADVIETY-VF-------WNAH-----ESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~ty-vf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
+.|++.|.-+|++|+|+|++- |+ |.++ .|. -.|.+..||.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~---~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS---SRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc---cccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 458889999999999999962 32 4332 121 13555679999999999999999987533
No 71
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.73 E-value=28 Score=40.12 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=72.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecC-cchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKG-KNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVW 151 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G-~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~W 151 (849)
++....+++++++++|++.|+.. ..+ ..|-..+... ..++.++-++++++||.|. +-++-+....|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g----- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG----- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC-----
Confidence 33456799999999999999963 111 0111111100 2357889999999999975 33321111111111
Q ss_pred cCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccc---cccccccccCcc---cHHHHHHHHHH
Q 038226 152 LRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIEN---EYGNMESSYGQQ---GKDYVKWAASM 225 (849)
Q Consensus 152 L~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIEN---Eyg~~~~~~~~~---~~~Y~~~l~~~ 225 (849)
.+=+.|+..+++.-+++++.++.-+. | |.+.|.+---- ||.. ...+... -.+.++++.+.
T Consensus 101 -------~las~d~~vR~~ai~~~kraId~A~e--L----Ga~~v~v~~G~~g~~~~~-~~d~~~a~~~~~e~L~~lae~ 166 (382)
T TIGR02631 101 -------GFTSNDRSVRRYALRKVLRNMDLGAE--L----GAETYVVWGGREGAEYDG-AKDVRAALDRMREALNLLAAY 166 (382)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEccCCCCCcCcc-ccCHHHHHHHHHHHHHHHHHH
Confidence 23345777766665666666666653 3 55554443211 1110 0000111 23344555556
Q ss_pred HHhcCCccceEE
Q 038226 226 ALGLGAGVPWVM 237 (849)
Q Consensus 226 ~~~~g~~vP~~~ 237 (849)
+++.|.+|.+..
T Consensus 167 A~~~G~GV~laL 178 (382)
T TIGR02631 167 AEDQGYGLRFAL 178 (382)
T ss_pred HHhhCCCcEEEE
Confidence 677766665443
No 72
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=78.94 E-value=7.1 Score=51.26 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=72.5
Q ss_pred eEEECCeEeEEEEE---EecCCCC--CcccHHHHHHHHHHcCCCEEEE-cee-c---cccCCCCccee----e----cCc
Q 038226 53 AIIIDGNRRMLISA---GIHYPRA--TPEMWPDLIAKSKEGGADVIET-YVF-W---NAHESIRGQYN----F----KGK 114 (849)
Q Consensus 53 ~~~idGk~~~l~sG---~iHy~R~--~~~~W~d~l~k~Ka~GlN~I~t-yvf-W---n~hEp~~G~yd----F----~G~ 114 (849)
.|.|||++.+.+.+ .-..+++ +-+.|++.|..+|+.|.|+|-. .++ = |..=...+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 46666644443322 3345565 5578999999999999999985 455 1 11111223332 3 356
Q ss_pred chHHHHHHHHHhc-CCEEEEecCcccccccCCCCC-CCccCcCCCcccccCChhHHHHH
Q 038226 115 NDIVKFVKLVGSS-GLYLQLRIGPYVCAEWNFGGF-PVWLRDIPGIEFRTNNAPFKEEM 171 (849)
Q Consensus 115 ~dl~~fl~la~~~-GL~viLR~GPYi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~f~~~~ 171 (849)
.|+.++++.+++. ||.+|+-. =||.=+- =.||.++|+.-....+.|+++..
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 7999999999986 99999864 2455443 35888888755555566665543
No 73
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=78.90 E-value=0.62 Score=55.92 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=36.7
Q ss_pred eCCCCCeEeEEEeeeeCCCcccccccccccccCCccccccc
Q 038226 808 HCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVS 848 (849)
Q Consensus 808 ~C~~g~~is~i~fAsfG~p~G~Cg~f~~g~c~a~~s~~~v~ 848 (849)
-|.++.++++|.+|+||+.+|+|++|..+.|.++++.-.+.
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~ 371 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFN 371 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccC
Confidence 35579999999999999999999999999999998876664
No 74
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=78.57 E-value=23 Score=40.00 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=89.6
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHH---hcCCEEEEecCcccccccCCCCCC
Q 038226 73 ATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVG---SSGLYLQLRIGPYVCAEWNFGGFP 149 (849)
Q Consensus 73 ~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~viLR~GPYi~aEw~~GG~P 149 (849)
..|+..+.-++.||+.|++.--.|-.| |.|+.-|++-++..- +.+|...|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 477888899999999999999998777 456777877776653 445655554 22223311
Q ss_pred CccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHHHHHHHHHhc
Q 038226 150 VWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGL 229 (849)
Q Consensus 150 ~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~ 229 (849)
.|-.....+.+-.... =.+..+++++.|++.+++...+--+|-||+++==-.+. ..-+++++.+++.|+++
T Consensus 117 ~w~g~~~~~l~~q~y~-~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYS-GEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCC-chhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 2322222221111111 01224677788888898765555588899987432222 24578999999999999
Q ss_pred CCccceEEecc
Q 038226 230 GAGVPWVMCKQ 240 (849)
Q Consensus 230 g~~vP~~~~~~ 240 (849)
|+.-+.++...
T Consensus 188 G~~giyii~~~ 198 (345)
T PF14307_consen 188 GLPGIYIIAVQ 198 (345)
T ss_pred CCCceEEEEEe
Confidence 99866554433
No 75
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.33 E-value=42 Score=35.66 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
-+++.++++++.|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999985321 13688899999999999763
No 76
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=77.15 E-value=3.6 Score=46.93 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=47.0
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCccc
Q 038226 64 ISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 64 ~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
++=|+++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|++.||.|++-+.|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45577777888899999999999999987766 789998532111 13788999999999999999987643
No 77
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=76.68 E-value=38 Score=41.06 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEc-eeccccCCCCcce--------eecCc----chHHHHHHHHHhcCCEEEEecCccccc
Q 038226 75 PEMWPDLIAKSKEGGADVIETY-VFWNAHESIRGQY--------NFKGK----NDIVKFVKLVGSSGLYLQLRIGPYVCA 141 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~ty-vfWn~hEp~~G~y--------dF~G~----~dl~~fl~la~~~GL~viLR~GPYi~a 141 (849)
++.=++.|..|+..-||.|+.| ..|-+|.|.|+.= |+.|+ .-+...|+.|++.|+.++.=--=|.+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4566779999999999999999 7899999987643 23443 257889999999999988543323222
Q ss_pred cc--CCCCCCCccCc-CCCc------cc----c-------cCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccc
Q 038226 142 EW--NFGGFPVWLRD-IPGI------EF----R-------TNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIE 201 (849)
Q Consensus 142 Ew--~~GG~P~WL~~-~p~i------~~----R-------t~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIE 201 (849)
+. ..|=.|.|... +++- .+ . ..|+.++++...=+.+.++.+.=.+++.++=|+.--+ .
T Consensus 197 ~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~--~ 274 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV--Y 274 (559)
T ss_dssp TT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--G
T ss_pred cCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--c
Confidence 22 35667888764 3321 01 1 1245565555554555555554445555555544333 2
Q ss_pred ccccccccccCcccHHHHHHHHHHHHhcCCccceEEec
Q 038226 202 NEYGNMESSYGQQGKDYVKWAASMALGLGAGVPWVMCK 239 (849)
Q Consensus 202 NEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 239 (849)
+.-|.... .-...|...|.++-..+ -+.+++|+.
T Consensus 275 d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 275 DYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred cCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 23332110 12456777777766654 456777764
No 78
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=76.48 E-value=37 Score=36.45 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCC
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIP 156 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p 156 (849)
-|++.|+.++++|++.|++..-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 49999999999999999983210 011111 121 24788899999999998753 2221 123433221
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccc-cc-ccccccCcccHHHHHHHHHHHHhcCCcc
Q 038226 157 GIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENE-YG-NMESSYGQQGKDYVKWAASMALGLGAGV 233 (849)
Q Consensus 157 ~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENE-yg-~~~~~~~~~~~~Y~~~l~~~~~~~g~~v 233 (849)
..++.-+++..+.+++.++..+. + |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.|++.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~~--l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAKE--M----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 12344455555556666665553 2 445554421111 00 000000 122346788888888877653
No 79
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.39 E-value=2.8 Score=44.81 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCEEEEceeccccC----CCCcce-e----ecCcchHHHHHHHHHhcCCEEEEec
Q 038226 80 DLIAKSKEGGADVIETYVFWNAHE----SIRGQY-N----FKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~tyvfWn~hE----p~~G~y-d----F~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.|.-+|++|+|+|.+-=++...+ -.+-.| + |.+..||.++++.|++.||+|||-.
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 457788999999999853333221 111111 1 3345699999999999999999865
No 80
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=74.84 E-value=43 Score=35.79 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=38.1
Q ss_pred EecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 67 GIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 67 ~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
++.|-+.+ +++.|++++++|++.|++.. |. ..++..+.++++++||.+..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 34444443 78899999999999999831 11 14799999999999999854
No 81
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.83 E-value=5.7 Score=42.98 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
+...++.|+.+|+.||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 677899999999999999998 34544443 34778999999999999999988
No 82
>PRK01060 endonuclease IV; Provisional
Probab=73.42 E-value=23 Score=38.20 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCCCCCCccCcC
Q 038226 78 WPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFGGFPVWLRDI 155 (849)
Q Consensus 78 W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~GG~P~WL~~~ 155 (849)
+++.|++++++|++.|++.+- +-|.-.++.++- .++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 889999999999999998542 112212222222 26888999999999973 11123331
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEec
Q 038226 156 PGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQ 199 (849)
Q Consensus 156 p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~Q 199 (849)
+.+-+.|+..+++..+.+++.++..+. + |-++|-+.
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~~--l----ga~~vv~h 109 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCAA--L----GAKLLVFH 109 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 123345677777777777777777653 3 44555554
No 83
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.97 E-value=17 Score=42.27 Aligned_cols=122 Identities=17% Similarity=0.284 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc------ee-------ccccCCCCccee-ecCcchHHHHHHHHHhcCCEEEEecCccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETY------VF-------WNAHESIRGQYN-FKGKNDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~ty------vf-------Wn~hEp~~G~yd-F~G~~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
.++.-.+.|.+++++|+|||-.= .+ |..- .||..- =.|..-|...|++|++.||.|+-++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~--~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDG--LPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccC--cCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 67778899999999999998642 22 3222 244331 22555788889999999999999988887
Q ss_pred ccccCCCC---CCCccCc-CCCcccc-cCC-------hhHHHHHHHHHHHHHH-HHHhcccccccCCcEEEeccccccc
Q 038226 140 CAEWNFGG---FPVWLRD-IPGIEFR-TNN-------APFKEEMQRFVKKIVD-LMREEMLFSWQGGPIIMLQIENEYG 205 (849)
Q Consensus 140 ~aEw~~GG---~P~WL~~-~p~i~~R-t~~-------~~f~~~~~~~~~~i~~-~~~~~~l~~~~gGpII~~QIENEyg 205 (849)
.|--..-. -|.|+.. .|+.... ... .++..+++.|+..++. .++++ .|=++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66321111 3667765 3543322 221 2566788888887554 44433 466778876655
No 84
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.31 E-value=30 Score=38.20 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccC--------CCCcceeecCc--chHHHHHHHHHhcCCEEEEecCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHE--------SIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hE--------p~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GP 137 (849)
+.+.-++.++++|+.||-+=-+++=...|. -.-+.|.|+-. -|..++++..++.|+++++.+=|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 566788999999999988655555333332 12346777633 39999999999999999987643
No 85
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=71.92 E-value=3.9 Score=41.69 Aligned_cols=81 Identities=25% Similarity=0.351 Sum_probs=37.3
Q ss_pred EEEEEeCCCCC---C-ceEEEeC---CCCceEEEECCeeeeeeee-eccCCCCCCCCCCCCCCCCCCcCcCCCCCCceeE
Q 038226 662 YKTYFDAPDGI---D-PVALDLG---SMGKGQAWVNGHHIGRYWT-VVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTW 733 (849)
Q Consensus 662 Ykt~F~~p~g~---d-pv~Ldl~---gmgKG~~wVNG~~IGRYW~-~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q~~ 733 (849)
++=.|++++.. + .+-|.+. ..++=+|.||| ..+..+. ... .++|.||+.- -+|...---
T Consensus 65 w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg-~~~~~~~~~~~-----~d~~~~r~g~-------~~G~~~~~~ 131 (167)
T PF14683_consen 65 WTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNG-WSGPFPSAPFG-----NDNAIYRSGI-------HRGNYRLYE 131 (167)
T ss_dssp EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETT-EE----------------S--GGGT----------S---EEE
T ss_pred EEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcC-ccCCccccccC-----CCCceeeCce-------ecccEEEEE
Confidence 34567654432 2 2333332 34566999999 7777662 221 2345555542 123456667
Q ss_pred EecCccccccCCcEEEEEeecC
Q 038226 734 YHVPRSWLQASNNLLVIFEETG 755 (849)
Q Consensus 734 YhVPr~~Lk~g~N~LVlfEe~g 755 (849)
|-||.+.|+.|.|+|.|---.|
T Consensus 132 ~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 132 FDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp EEE-TTSS-SEEEEEEEEEE-S
T ss_pred EEEcHHHEEeccEEEEEEEccC
Confidence 8899999999999997743333
No 86
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=71.10 E-value=8.1 Score=42.73 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=47.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCC-CcceeecCc--chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESI-RGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~-~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
+.+...+.++++|+.||.+=.+++-...+... -+.|.|.-. -|..++++.+++.|+++++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 66778999999999996654444433333321 235665532 29999999999999999998877764
No 87
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.45 E-value=7.7 Score=46.66 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCEEEE-cee-------ccc-----cCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 81 LIAKSKEGGADVIET-YVF-------WNA-----HESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.|.-+|++|+|+|++ .|+ |.+ ..|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 116 ~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 116 KLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred hhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 577789999999996 342 322 12211 24556799999999999999999874
No 88
>PRK09989 hypothetical protein; Provisional
Probab=69.32 E-value=48 Score=35.46 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
-.+++|++++++|++.|++..+|. .+.....++++++||.+..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999843322 2467788889999999774
No 89
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=68.55 E-value=16 Score=39.37 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
...++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 67788899999999999998 45655554 447889999999999999988774
No 90
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.16 E-value=9.7 Score=46.61 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCEEEE-cee-------ccc-----cCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 81 LIAKSKEGGADVIET-YVF-------WNA-----HESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+|.-+|++|+|+|+. .|+ |.. ..+.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 357789999999995 453 321 11111 35566799999999999999999874
No 91
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=66.90 E-value=41 Score=37.61 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=50.5
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCc--chHHHHHHHHHhcCCEEEEecCccc
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
+|..|. +.+..++.++++++.+|-.=.+.+-+.... ..+.|+|+.. -|..+|++..++.|++|++..=|+|
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i 88 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGI 88 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccc
Confidence 344554 566788999999999987555544332222 3456777543 3999999999999999999876665
No 92
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=66.77 E-value=3.1 Score=44.20 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 79 PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
-...+++.++|-+.|.+.++|....+..-.+..+ ++.++.+.|++.||.|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999997766655455555 9999999999999999998
No 93
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.97 E-value=19 Score=39.53 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=61.8
Q ss_pred eEEEecceEEECCeEeEEEEE--EecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec--CcchHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISA--GIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK--GKNDIVKFV 121 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG--~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~--G~~dl~~fl 121 (849)
.|... .+.|.|.|++++.| ++| .++.-.+..+++|++|+.+++.|.|=+...| +.|. |...+..+-
T Consensus 15 ~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 15 IVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILK 84 (266)
T ss_pred EEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHH
Confidence 45553 37777778899988 333 5677888899999999999999988744443 4666 567889999
Q ss_pred HHHHhcCCEEEEec
Q 038226 122 KLVGSSGLYLQLRI 135 (849)
Q Consensus 122 ~la~~~GL~viLR~ 135 (849)
+.+++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988765
No 94
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.62 E-value=32 Score=38.18 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCCCcccHHHHHHHHHHcCC--CEEEEceeccccCCCCcceeecC--cchHHHHHHHHHhcCCEEEEecCcccccc
Q 038226 71 PRATPEMWPDLIAKSKEGGA--DVIETYVFWNAHESIRGQYNFKG--KNDIVKFVKLVGSSGLYLQLRIGPYVCAE 142 (849)
Q Consensus 71 ~R~~~~~W~d~l~k~Ka~Gl--N~I~tyvfWn~hEp~~G~ydF~G--~~dl~~fl~la~~~GL~viLR~GPYi~aE 142 (849)
...+.+.-.+.++++++.|+ ++|.+=..|- ..-|.|.|.- .-|..++++..++.|+++++.+=|||+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 34577888999999999996 4555544452 3456666653 23899999999999999999999999853
No 95
>PLN02960 alpha-amylase
Probab=64.53 E-value=12 Score=47.08 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEE-cee-------cccc-----CCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 79 PDLIAKSKEGGADVIET-YVF-------WNAH-----ESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+++|.-+|++|+|+|++ .|+ |.+. .|.+ .|....||.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~---~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS---RFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688899999999997 343 4321 1111 24455799999999999999999875
No 96
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=64.36 E-value=40 Score=39.06 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=58.9
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCC----cceeecCc---chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 68 IHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIR----GQYNFKGK---NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 68 iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~----G~ydF~G~---~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
-+|+..+.+.-.+.++++++.|++.+.+=--|....... |.+.-+-. .-|..+++.+++.||..=|+..|.+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 356777888888999999999999877755576442211 33322111 14899999999999999999988776
Q ss_pred cc--cCCCCCCCccCcCCC
Q 038226 141 AE--WNFGGFPVWLRDIPG 157 (849)
Q Consensus 141 aE--w~~GG~P~WL~~~p~ 157 (849)
++ --+-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 42 123457999987654
No 97
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=64.27 E-value=21 Score=39.30 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=69.3
Q ss_pred EEEEEEecCCCCCcc-cHH---HHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 62 MLISAGIHYPRATPE-MWP---DLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 62 ~l~sG~iHy~R~~~~-~W~---d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
+.+++..|+..-+.. -.+ ++|++=-++|.+.+-|=.| ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888887664322 122 2333333699999998443 4444 7889999999997765445554
Q ss_pred ccc---------cccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 138 YVC---------AEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 138 Yi~---------aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
..+ +||..--+|.|+.+.=. ....+++..++.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999976200 12233455666777788888887774
No 98
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=64.13 E-value=79 Score=34.26 Aligned_cols=123 Identities=22% Similarity=0.447 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCC--cceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIR--GQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~--G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
--|+++|.-+|++||+-|+.- .-|.-+ -+.||+. .-.....+++++.|+ |+ |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmS----vDEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMS----VDESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEe----ccchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------hh
Confidence 459999999999999999984 445433 3567762 234456888899998 43 3344 11
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCc----ccHHHH---HHHHHHH
Q 038226 154 DIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQ----QGKDYV---KWAASMA 226 (849)
Q Consensus 154 ~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~----~~~~Y~---~~l~~~~ 226 (849)
.+..-.|-+.|+.-++.....+.+-+..-.+ | .|=-+|+ ..+.-.|.+ ..+.|+ +|..++|
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~d--L------GIRtIQL----AGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQD--L------GIRTIQL----AGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHHH--h------CceeEee----ccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 1222235688998888777777765554432 3 2556676 222222332 234444 5556666
Q ss_pred HhcCC
Q 038226 227 LGLGA 231 (849)
Q Consensus 227 ~~~g~ 231 (849)
.++++
T Consensus 145 ~~aqV 149 (287)
T COG3623 145 ARAQV 149 (287)
T ss_pred Hhhcc
Confidence 66554
No 99
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=63.70 E-value=27 Score=40.30 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=42.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.+.|+++|+.+|++||+....=+- ....+.. .-|...++.|++.|+++.|.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7889999999999999999887443 1222332 378888999999999999986
No 100
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.46 E-value=23 Score=29.81 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4566788999999999999999833 333 58877765 5778999999999988754
No 101
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=61.44 E-value=13 Score=45.36 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-cee-------ccc-----cCCCCcceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 74 TPEMWPDLIAKSKEGGADVIET-YVF-------WNA-----HESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
..+.=.+.|.-+|++|+++||. .|- |.+ .-|.. .|....||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3444566788899999999996 221 553 12221 2444569999999999999999986
No 102
>PRK10785 maltodextrin glucosidase; Provisional
Probab=61.30 E-value=15 Score=44.85 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEE-ceecc--ccCCCCcce-----eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 80 DLIAKSKEGGADVIET-YVFWN--AHESIRGQY-----NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~t-yvfWn--~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.|.-+|++|+|+|-+ .||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 183 ~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567779999999997 56632 222112112 24566799999999999999999864
No 103
>PRK09505 malS alpha-amylase; Reviewed
Probab=61.26 E-value=15 Score=45.49 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeccccCCC----Cc-------------c-----eeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 78 WPDLIAKSKEGGADVIET-YVFWNAHESI----RG-------------Q-----YNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 78 W~d~l~k~Ka~GlN~I~t-yvfWn~hEp~----~G-------------~-----ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
+.+.|.-+|++|+|+|-+ .++=+.|... .| . -.|....||..+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 455677789999999986 4654443221 11 1 12455679999999999999999987
Q ss_pred c
Q 038226 135 I 135 (849)
Q Consensus 135 ~ 135 (849)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 104
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.11 E-value=39 Score=41.79 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHcCCCEEE---------------EceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccc
Q 038226 76 EMWPDLIAKSKEGGADVIE---------------TYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~---------------tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
+--...|+.+|++|+|+|= .|++| -|=|. +-|.= |-. ...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~--r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPM--RADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccccc--ccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 4567799999999999985 46667 44443 33311 111 345688999999999999853
Q ss_pred c---------ccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccc
Q 038226 141 A---------EWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENE 203 (849)
Q Consensus 141 a---------Ew~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENE 203 (849)
. +++..+=|...+. +--.| =.+|..++++|++.|.+-++.+ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIHP--EQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccCC--CCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 2 2222222222211 10122 2468899999999999988853 24555555444
No 105
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.82 E-value=12 Score=32.05 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=27.7
Q ss_pred eEEeccccceEEEEECCEEEEEEEeeeEEEEeeeeecCCCcEEEE
Q 038226 538 TVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQPVEFQSGYNDLIL 582 (849)
Q Consensus 538 ~L~v~~~~d~~~VfVNG~~vGs~~g~~~~~~~~v~L~~G~n~Lsl 582 (849)
.|.|.+.=..+.|||||+++|... ..+. .|..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp---~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP---LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc---ceee---ecCCccEEEEE
Confidence 567777777889999999999443 2221 26678877775
No 106
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=60.66 E-value=13 Score=33.49 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=33.7
Q ss_pred ceEEeccccceEEEEECCEEEEEEEeeeEEEEeeeee-cCCCcEEEEEEecCCc
Q 038226 537 PTVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQPVEF-QSGYNDLILLSQTVGL 589 (849)
Q Consensus 537 ~~L~v~~~~d~~~VfVNG~~vGs~~g~~~~~~~~v~L-~~G~n~LslLse~~Gl 589 (849)
..|++.+....++-||||+++|.....+ .+ .+.+ ..|.++|++ ++..|+
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~-~~--~~~~~~~G~h~l~v-vD~~G~ 83 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH-QL--FWQPDRPGEHTLTV-VDAQGR 83 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC-eE--EeCCCCCeeEEEEE-EcCCCC
Confidence 4555554455999999999998776432 12 2334 679999987 666665
No 107
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=60.44 E-value=12 Score=44.87 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHcCCCEEEE-ceeccccCCCCccee----------ecCcchHHHHHHHHHhcCCEEEEec
Q 038226 77 MWPDLIAKSKEGGADVIET-YVFWNAHESIRGQYN----------FKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~t-yvfWn~hEp~~G~yd----------F~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
-+.+.|.-+|++|+++|-+ .+|-+-.. ...|+ |.+..||.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567788899999999987 35432110 01222 4455799999999999999999864
No 108
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=60.35 E-value=15 Score=44.83 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------cccc-----CCCCccee----ec--CcchHHHHHHHHHhcCCEEE
Q 038226 80 DLIAKSKEGGADVIET-YVF---------------WNAH-----ESIRGQYN----FK--GKNDIVKFVKLVGSSGLYLQ 132 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~t-yvf---------------Wn~h-----Ep~~G~yd----F~--G~~dl~~fl~la~~~GL~vi 132 (849)
+.|.-+|++|+|+|++ .|+ |.+. .|.+ .|- +- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4588899999999996 343 3222 1110 111 10 02689999999999999999
Q ss_pred Eec
Q 038226 133 LRI 135 (849)
Q Consensus 133 LR~ 135 (849)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 109
>PLN03059 beta-galactosidase; Provisional
Probab=59.83 E-value=37 Score=42.81 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=33.0
Q ss_pred ccceEEEEEEeCCCCCCc------eEEEeCCCC-ceEEEECCeeeeeee
Q 038226 657 STFTWYKTYFDAPDGIDP------VALDLGSMG-KGQAWVNGHHIGRYW 698 (849)
Q Consensus 657 ~~~twYkt~F~~p~g~dp------v~Ldl~gmg-KG~~wVNG~~IGRYW 698 (849)
....||+|+|+.+....+ ..|.+.+.+ .-+|||||+-+|.-.
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 478999999998664321 248888888 479999999999865
No 110
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.66 E-value=75 Score=35.91 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=55.4
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcc--hH--HHHHHHHHhcCCEEEEecCcccc
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKN--DI--VKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~--dl--~~fl~la~~~GL~viLR~GPYi~ 140 (849)
+|..|. +.+..++.++++++.||.+=.+.+=+..+. ..+.|.|...+ |. .++++..++.|++|++.+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 567788999999999988655554443333 24677776543 78 99999999999999999999998
Q ss_pred cc
Q 038226 141 AE 142 (849)
Q Consensus 141 aE 142 (849)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 111
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.02 E-value=86 Score=33.60 Aligned_cols=92 Identities=12% Similarity=0.170 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCCEEEEceeccccCCCCcce-eecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCC
Q 038226 78 WPDLIAKSKEGGADVIETYVFWNAHESIRGQY-NFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIP 156 (849)
Q Consensus 78 W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~y-dF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p 156 (849)
-++.|+++.+.|++.|+.. ..+|..-.- +++ ..++.++.++++++||.+.+ -+||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~-h~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSV-HAPYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEE-ECCce-----------------
Confidence 3478999999999999994 334422110 121 23688899999999998654 23431
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEec
Q 038226 157 GIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQ 199 (849)
Q Consensus 157 ~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~Q 199 (849)
+.+.+.++..+++..+++++.++..+. + |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 124456777777777778877777663 3 55666654
No 112
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=56.96 E-value=20 Score=43.27 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeccccCCCC-cce----------eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 78 WPDLIAKSKEGGADVIET-YVFWNAHESIR-GQY----------NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 78 W~d~l~k~Ka~GlN~I~t-yvfWn~hEp~~-G~y----------dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.+.|.-+|++|+++|-+ .++-. |.. ..| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457788899999999987 45421 111 122 24455799999999999999999764
No 113
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=56.91 E-value=20 Score=42.98 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHcCCCEEEE-ceecc---ccCCCCcce-----eecCcchHHHHHHHHHhcCCEEEEe
Q 038226 76 EMWPDLIAKSKEGGADVIET-YVFWN---AHESIRGQY-----NFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~t-yvfWn---~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~viLR 134 (849)
.-+.+.|.-+|++|+|+|-+ .||=+ -|--..-.| .|.+..|+.++++.|+++||+|||-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34667788899999999986 34411 110001111 2455679999999999999999985
No 114
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.33 E-value=32 Score=37.29 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcce--eecC--cchHHHHHHHHHhcCCEEEEecCccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQY--NFKG--KNDIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~y--dF~G--~~dl~~fl~la~~~GL~viLR~GPYi 139 (849)
+.+...+.++++++.||-+=.+.+-+...+. .+.| +|.- --|..++++..++.|++|+|.+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677889999999999886665555444443 3555 4442 23899999999999999999998888
No 115
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=56.00 E-value=33 Score=29.63 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=23.2
Q ss_pred cccceEEEEECCEEEEEEEeee------EEEEeee
Q 038226 543 SMRDVLRVFINGQLTGSVIGHW------VKVVQPV 571 (849)
Q Consensus 543 ~~~d~~~VfVNG~~vGs~~g~~------~~~~~~v 571 (849)
...|.+-||++++|+|..+... |.|+..|
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 5689999999999999998642 6666554
No 116
>PRK12677 xylose isomerase; Provisional
Probab=55.25 E-value=3.1e+02 Score=31.71 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec---CcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCcc
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK---GKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVWL 152 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~---G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~WL 152 (849)
-+++.++++++.|+..|+.. .+..--|+.+ -...+.++.++++++||.|. +-+.-|.+ |.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~--------p~~- 96 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTH--------PVF- 96 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCC--------ccc-
Confidence 47899999999999999873 1111112111 11258899999999999976 44421111 211
Q ss_pred CcCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 153 RDIPGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 153 ~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
..+ .+-+.|+..++...+.+++.++.-+
T Consensus 97 --~~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 97 --KDG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred --cCC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 2445577777776666666666655
No 117
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=53.76 E-value=43 Score=37.65 Aligned_cols=119 Identities=22% Similarity=0.402 Sum_probs=74.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCCCCcc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGFPVWL 152 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~P~WL 152 (849)
..-.|+.--.-.+.+|+-+|.+|-+|+.-+-. .|++.|+.-.+.+--+.| +.. .||-=.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNP-------- 190 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNP-------- 190 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCC--------
Confidence 34569999899999999999999999976643 488899999988766643 322 143221
Q ss_pred CcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHHHHHHHHHhcCCc
Q 038226 153 RDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGLGAG 232 (849)
Q Consensus 153 ~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~g~~ 232 (849)
-|| || .+.=+..|++.||...|+.-=. |+.| |. +.|..++ =.|+.+..++.|
T Consensus 191 ---TGm-----DP-----T~EQW~qia~vik~k~lf~fFD---iAYQ-----Gf---ASGD~~~--DawAiR~fV~~g-- 242 (410)
T KOG1412|consen 191 ---TGM-----DP-----TREQWKQIADVIKSKNLFPFFD---IAYQ-----GF---ASGDLDA--DAWAIRYFVEQG-- 242 (410)
T ss_pred ---CCC-----CC-----CHHHHHHHHHHHHhcCceeeee---hhhc-----cc---ccCCccc--cHHHHHHHHhcC--
Confidence 233 22 2233456777777655541100 3444 32 2343332 348888888877
Q ss_pred cceEEecc
Q 038226 233 VPWVMCKQ 240 (849)
Q Consensus 233 vP~~~~~~ 240 (849)
.+++.|+.
T Consensus 243 ~e~fv~QS 250 (410)
T KOG1412|consen 243 FELFVCQS 250 (410)
T ss_pred CeEEEEhh
Confidence 56788864
No 118
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=52.54 E-value=69 Score=39.85 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=35.9
Q ss_pred HHHHHHcCCCEEEE-ceeccccC---CCCc-----cee----------e---cCcchHHHHHHHHHhcCCEEEEec
Q 038226 82 IAKSKEGGADVIET-YVFWNAHE---SIRG-----QYN----------F---KGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 82 l~k~Ka~GlN~I~t-yvfWn~hE---p~~G-----~yd----------F---~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
|.-+|++|+|+|++ .||=...+ ...| -|| | ....+|.++++.|+++||.|||-.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 66789999999996 45411111 1111 011 1 124589999999999999999875
No 119
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.17 E-value=1.2e+02 Score=30.38 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCC------CcceeecCcchHHHHHHHHHhcCCEEE-EecCcccccccCCCCC
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESI------RGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRIGPYVCAEWNFGGF 148 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~------~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~GPYi~aEw~~GG~ 148 (849)
+.-++..+.+++.|+..+....+-+...+. +.+ .-.....+.+.+++|++.|...+ +-+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 345677888899999977765543333321 111 11123488999999999999865 54442
Q ss_pred CCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccccccc
Q 038226 149 PVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNM 207 (849)
Q Consensus 149 P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~ 207 (849)
|-.. .....+.-.+.+.+.+++++++.++++ |-+-+||..+..
T Consensus 95 --~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-----PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-----TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred --cccc-----cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 1000 111234566777788888888887543 346789988753
No 120
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.87 E-value=27 Score=39.05 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCc--ceeecCcc--hHHHHHHHHHhcCCEEEEecCccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRG--QYNFKGKN--DIVKFVKLVGSSGLYLQLRIGPYV 139 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G--~ydF~G~~--dl~~fl~la~~~GL~viLR~GPYi 139 (849)
+.+.-.+.++++++.||-+=.+.+=|.... ..| .|.|+-.+ |..+||+..+++|++|++.+=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 556678899999999887655555454333 234 77776433 999999999999999999876666
No 121
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=33 Score=38.18 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceec---cccCCCCcce--------eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFW---NAHESIRGQY--------NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfW---n~hEp~~G~y--------dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.+..-.++++.+|..|+|++-+=+-= ++.=|....+ .| .|+..||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45667889999999999988652211 1111222211 23 399999999999999999997
No 122
>PLN02361 alpha-amylase
Probab=50.25 E-value=32 Score=40.01 Aligned_cols=60 Identities=7% Similarity=0.127 Sum_probs=40.4
Q ss_pred ccHHH---HHHHHHHcCCCEEEEc-ee--ccccCCCCcc-ee----ecCcchHHHHHHHHHhcCCEEEEec
Q 038226 76 EMWPD---LIAKSKEGGADVIETY-VF--WNAHESIRGQ-YN----FKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 76 ~~W~d---~l~k~Ka~GlN~I~ty-vf--Wn~hEp~~G~-yd----F~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+-|.. .|.-+|++|+++|-+. ++ ...|--.+.. |+ |....+|.++|+.|++.||.||+-.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44555 4555699999999875 33 1222222322 22 4455799999999999999999865
No 123
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=49.79 E-value=1.2e+02 Score=35.13 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=64.7
Q ss_pred CCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCc----ccccC-ChhHHHHHHHHHHHH
Q 038226 104 SIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGI----EFRTN-NAPFKEEMQRFVKKI 178 (849)
Q Consensus 104 p~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i----~~Rt~-~~~f~~~~~~~~~~i 178 (849)
+..|.|||+....=+.|++.|++.|...++-+ .=-.|.|+...... ...++ -+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 56799999987777889999999999977654 22378888763211 00011 133456667777777
Q ss_pred HHHHHhcccccccCCcEEEecccccccccccccC---------cccHHHHHHHHHHHHhcCCccceEEec
Q 038226 179 VDLMREEMLFSWQGGPIIMLQIENEYGNMESSYG---------QQGKDYVKWAASMALGLGAGVPWVMCK 239 (849)
Q Consensus 179 ~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~---------~~~~~Y~~~l~~~~~~~g~~vP~~~~~ 239 (849)
+++++.+++ +|=-+--=||.... +..+ +.....++.|....++.|+..-+.+|.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 777754333 44444445887532 2111 124678888888888889886655554
No 124
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=49.27 E-value=42 Score=38.07 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=59.3
Q ss_pred eEEEecceEEECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecC--cchHHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISAGIHYPRA-TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKG--KNDIVKFVK 122 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G--~~dl~~fl~ 122 (849)
.|... .+.|.|.+++++.| +=-+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+
T Consensus 81 ~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~ 151 (335)
T PRK08673 81 VVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAE 151 (335)
T ss_pred EEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHH
Confidence 34553 47777888888988 2222 56667778888899999999999996 4333367875 456777777
Q ss_pred HHHhcCCEEEEec
Q 038226 123 LVGSSGLYLQLRI 135 (849)
Q Consensus 123 la~~~GL~viLR~ 135 (849)
.+++.||.++-.+
T Consensus 152 ~~~~~Gl~v~tev 164 (335)
T PRK08673 152 AREETGLPIVTEV 164 (335)
T ss_pred HHHHcCCcEEEee
Confidence 7899999888765
No 125
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=49.27 E-value=31 Score=38.91 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=53.3
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcc--hHHHHHHHHHhcCCEEEEecCccccc
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKN--DIVKFVKLVGSSGLYLQLRIGPYVCA 141 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~--dl~~fl~la~~~GL~viLR~GPYi~a 141 (849)
+|..|. +.+.-.+.++++++.||-+=.+.+-+... ...+.|+|+-.+ |..+|++..++.|++|++..=|+|+.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 344453 55667889999999998765555443222 345667776432 89999999999999999999898874
No 126
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.73 E-value=34 Score=38.20 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCC-----CCcceeecCc--chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHES-----IRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-----~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
..+...+.++++|+.||-+=.+.+-+..+.- .-|.|.|+-. -|..++++..+++|++|++.+=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4567789999999999876555554333331 2346766533 39999999999999999998866664
No 127
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=48.14 E-value=25 Score=46.51 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEE-ceeccccCCC---Cc--c---ee----------ec--CcchHHHHHHHHHhcCCEEEEec
Q 038226 80 DLIAKSKEGGADVIET-YVFWNAHESI---RG--Q---YN----------FK--GKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~t-yvfWn~hEp~---~G--~---yd----------F~--G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.|.-+|++|+++|++ .||=...|.. .| . |+ |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 4653222211 11 0 22 23 56789999999999999999874
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=47.10 E-value=37 Score=42.93 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=45.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ceecc----ccCCCCc-----ceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIET-YVFWN----AHESIRG-----QYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~t-yvfWn----~hEp~~G-----~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
+-+-|.+.|.-++++|+++|.+ .+|=+ .|--..- .-.|.+..||.+|++.|+++||.|||-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4455888999999999999976 34311 1111100 113557889999999999999999987643
No 129
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=46.46 E-value=97 Score=35.07 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=55.4
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCc--chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
+|..|. +.+..+++++++++.+|-.=.+++=|..+. .-+.|.|... -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667789999999999987655555555543 3466777643 38899999999999999999999998
No 130
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=45.95 E-value=39 Score=40.33 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCC---CcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccC
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESI---RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~---~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~ 153 (849)
.+.++++.||++|+++-+.-|-|...=|. .+.-+-.|-.--..+|+...++||...+-. -.=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 58899999999999999999999988774 245777777777888999999999865443 1335899987
Q ss_pred c-CCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEec
Q 038226 154 D-IPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQ 199 (849)
Q Consensus 154 ~-~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~Q 199 (849)
+ ..|-.-+..=+.|+++++--++++.+++|. +..=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~--WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVKH--WITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhccccee--eEEecccceeeee
Confidence 6 455322333456888888888888888883 2222444444443
No 131
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.93 E-value=47 Score=37.07 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCC---CCcceeecCc--chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHES---IRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp---~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
.+.-.+.++++++.||-+=.+.+-+....- ....|+|.-. -|..++++..++.|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346688899999999976655543322221 1234666432 38999999999999999998877774
No 132
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=44.84 E-value=5.5e+02 Score=29.72 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=66.8
Q ss_pred HcCCCEEEEce----eccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCc----
Q 038226 87 EGGADVIETYV----FWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGI---- 158 (849)
Q Consensus 87 a~GlN~I~tyv----fWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i---- 158 (849)
++|+...++.| ||+. |.+|-. .+=..+-+-+-.+|+.|..-| |+ .|+|+...-.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d~w--~kels~Ak~~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~ 139 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSADNW--YKELSTAKSAINPGMIVFASP-------WS---PPASMKTTNNRNGGN 139 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcchh--hhhcccchhhcCCCcEEEecC-------CC---CchhhhhccCcCCcc
Confidence 47888888876 4665 333311 111123344667899998887 65 79999763221
Q ss_pred --cccc-CChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCc---ccHHHHHHHHHHHHhcC
Q 038226 159 --EFRT-NNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQ---QGKDYVKWAASMALGLG 230 (849)
Q Consensus 159 --~~Rt-~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~---~~~~Y~~~l~~~~~~~g 230 (849)
++|. ..++|-++..+| +..|+ .+|=|+-+.-|.||..... .|.. ...+.++.+++-+....
T Consensus 140 ~g~Lk~e~Ya~yA~~l~~f----v~~m~------~nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 140 AGRLKYEKYADYADYLNDF----VLEMK------NNGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred ccccchhHhHHHHHHHHHH----HHHHH------hCCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 3432 244444444444 33445 3566888888889987432 2222 24566677777666654
No 133
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=44.10 E-value=73 Score=35.95 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=52.3
Q ss_pred cceEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEcee----ccccCC------CC-----------cce
Q 038226 51 HRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVF----WNAHES------IR-----------GQY 109 (849)
Q Consensus 51 ~~~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvf----Wn~hEp------~~-----------G~y 109 (849)
.|+|+||=-| ||+ +.+...+.|+.|...++|+...++- |.+.-+ .. |.|
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 4566666544 333 7888999999999999999998873 543211 12 233
Q ss_pred eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 110 NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 110 dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
. ..|+..+++.|++.|+.||-.+
T Consensus 73 T---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 T---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred C---HHHHHHHHHHHHHcCCEEEEec
Confidence 3 3499999999999999999665
No 134
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=43.47 E-value=35 Score=37.41 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCCCceEEEEEEeecCCCcccccccCCCCceEEeccccceEEEEECCEEEEEEEeeeEEEEee
Q 038226 508 KDYSDYLWHITQIYVSDDDISFWKTNEVRPTVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQP 570 (849)
Q Consensus 508 ~d~sdYlwY~t~v~~~~~~~~~~~~~~~~~~L~v~~~~d~~~VfVNG~~vGs~~g~~~~~~~~ 570 (849)
+|-.+-.||+-+|.+..+. +.-.++..+|++.+.+-.+.|+|||.-+=+..|.+.-|+..
T Consensus 84 rdfv~~~wyer~v~vpe~w---~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~ 143 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESW---TQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPD 143 (297)
T ss_pred ccceeeeEEEEEEEcchhh---hhhcCCeEEEEeecccceeEEEEcceeecccccCccccchh
Confidence 4677889999999886543 33345778999999999999999998877666655444433
No 135
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=43.17 E-value=1e+02 Score=34.64 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=83.8
Q ss_pred eEEEecceEEECCeEeEEEEEEec-CCCCCcc---cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISAGIH-YPRATPE---MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFV 121 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG~iH-y~R~~~~---~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl 121 (849)
.|++-+-.+++|. .=+-+.++ -+-...+ .-...+...++.|.+||=. +.+- .=-+|..+..
T Consensus 17 GvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~~----~~GRdv~~m~ 81 (316)
T COG1735 17 GVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATNI----GIGRDVLKMR 81 (316)
T ss_pred cceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCcc----ccCcCHHHHH
Confidence 5677777777775 00111222 1111111 1223455666778888754 1110 1126899999
Q ss_pred HHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccc
Q 038226 122 KLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIE 201 (849)
Q Consensus 122 ~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIE 201 (849)
+.+++-||.+|...|+|.-+.|+ .|+...| ++.+...+++.++. ++ .|-+|=+=+|
T Consensus 82 ~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi---~gT~ikAGiI- 137 (316)
T COG1735 82 RVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI---AGTGIKAGII- 137 (316)
T ss_pred HHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc---cCCcccccee-
Confidence 99999999999999999988885 6765433 45566666666652 22 2222222222
Q ss_pred ccccccccccCcccHHHHHHHHHHHHhc-CCccceEEecc
Q 038226 202 NEYGNMESSYGQQGKDYVKWAASMALGL-GAGVPWVMCKQ 240 (849)
Q Consensus 202 NEyg~~~~~~~~~~~~Y~~~l~~~~~~~-g~~vP~~~~~~ 240 (849)
-|-|.+.. + .+.=.+-|+..|+++ .+++|+.+-.+
T Consensus 138 k~~~~~~~-i---Tp~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 138 KEAGGSPA-I---TPLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeccCccc-C---CHHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 34443221 1 222234455555543 56899876543
No 136
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=42.61 E-value=55 Score=37.06 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=56.4
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcc-eeecCcchHHHHHHHHHhcCCEEEEecCcccccc
Q 038226 64 ISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQ-YNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAE 142 (849)
Q Consensus 64 ~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~-ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aE 142 (849)
++=|+.+.|.+.+.=...|++|...|+.-|=| .+|.|.+.. -.|. -+.+.++.|++.||+||+-+-|=|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45578888999888888999999999988766 678887642 1122 677889999999999999987766544
No 137
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=41.86 E-value=49 Score=42.07 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eecc----ccCCCCc-----ceeecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETY-VFWN----AHESIRG-----QYNFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~ty-vfWn----~hEp~~G-----~ydF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
+-+-+.+.|.-++++|+|+|-+- ++=+ .|--..- .-.|.+..+|.+|++.|+++||.|||-+=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568899999999999999863 3311 1110000 112457789999999999999999988744
No 138
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=41.67 E-value=46 Score=36.18 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|++|++.|-+ .|..++-.|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 787777666533 33444445559999999999998
No 139
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.56 E-value=1.1e+02 Score=32.86 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=46.8
Q ss_pred Ccceeec-CcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 106 RGQYNFK-GKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 106 ~G~ydF~-G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
.|...+. +..++..+++.|++.|++|++.+|= |..+. +. .+ ..++. .-++|++.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FT----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---ch----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3457889999999999999999861 22111 10 01 12332 345788999999987
Q ss_pred cccccccCCcEEEeccccccc
Q 038226 185 EMLFSWQGGPIIMLQIENEYG 205 (849)
Q Consensus 185 ~~l~~~~gGpII~~QIENEyg 205 (849)
+++ + ++.|+=|+.
T Consensus 98 ~~~---D-----GIdiDwE~~ 110 (253)
T cd06545 98 YNL---D-----GIDVDLEGP 110 (253)
T ss_pred hCC---C-----ceeEEeecc
Confidence 654 2 345666765
No 140
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=41.29 E-value=47 Score=45.12 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eeccccCCCCc---ce----------eecCcchHHHHHHHHHhcCCEEEEecCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETY-VFWNAHESIRG---QY----------NFKGKNDIVKFVKLVGSSGLYLQLRIGP 137 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~ty-vfWn~hEp~~G---~y----------dF~G~~dl~~fl~la~~~GL~viLR~GP 137 (849)
+-+-|.+.|.-+|++|+|+|-+- +| +..+| -| .|.+..||.+|++.|+++||.|||-+=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999863 33 21222 12 2557789999999999999999987643
No 141
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=40.68 E-value=50 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=25.8
Q ss_pred cCCcEEEeccccc-ccccccccCc-----ccHHHHHHHHHH---HHhcCCccceEE
Q 038226 191 QGGPIIMLQIENE-YGNMESSYGQ-----QGKDYVKWAASM---ALGLGAGVPWVM 237 (849)
Q Consensus 191 ~gGpII~~QIENE-yg~~~~~~~~-----~~~~Y~~~l~~~---~~~~g~~vP~~~ 237 (849)
+...|.+|+|=|| .++....|.. ....|.+||+++ +|+.+-..|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3457999999999 6632211211 245677777766 456677788654
No 142
>PRK09875 putative hydrolase; Provisional
Probab=40.39 E-value=2.2e+02 Score=31.70 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=55.7
Q ss_pred eEEEecceEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVG 125 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 125 (849)
.+++-+-.|+++..+ +.+......-..+.=...|+.+|++|.++|= |..+ ..-.+|.....++++
T Consensus 7 G~tl~HEHl~~~~~~---~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSG---FKNNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChh---hcCCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 456666677766532 1111111111233344567888999998873 2222 112469999999999
Q ss_pred hcCCEEEEecCcccccccCCCCCCCccCc
Q 038226 126 SSGLYLQLRIGPYVCAEWNFGGFPVWLRD 154 (849)
Q Consensus 126 ~~GL~viLR~GPYi~aEw~~GG~P~WL~~ 154 (849)
+-|+.+|...|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885432 5777663
No 143
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=40.01 E-value=86 Score=38.42 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 57 DGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 57 dGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
++++-|.+++..|+.+.+.+.=-++|.+-.++|.+-+.|=.|++ .+ .+.+|++.+++.++.+|..+-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEee
Confidence 34556889999987766544333456666688999999955543 33 788888888877888888887
Q ss_pred ccccc--------ccCCCCCCCccCcC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 137 PYVCA--------EWNFGGFPVWLRDI-PGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 137 PYi~a--------Ew~~GG~P~WL~~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
|.... +|..-=+|.|+.+. .. .. +.+.++++--++..++++.++
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 74432 35555578888761 11 11 334677777778888877776
No 144
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=39.85 E-value=52 Score=37.04 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=51.0
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCc--chHHHHHHHHHhcCCEEEEecCcccc
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~ 140 (849)
+|..|. +.+...+.++++++.||-+=.+.+-+.... .-+.|+|.-. -|..++++..++.|+++++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 556678999999999987544444333332 3445666533 38899999999999999998877775
No 145
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.51 E-value=1e+02 Score=33.70 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=68.8
Q ss_pred eEEEEEEecCCCCCcccH----HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCE--EEEe
Q 038226 61 RMLISAGIHYPRATPEMW----PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLY--LQLR 134 (849)
Q Consensus 61 ~~l~sG~iHy~R~~~~~W----~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~--viLR 134 (849)
.+.+++..|+.+-+.... .++|++=.++|.+.+-|=. .||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 478889998776433221 2345556678999988833 34544 788999999999765 4444
Q ss_pred cCccccc-------ccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 135 IGPYVCA-------EWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 135 ~GPYi~a-------Ew~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
+-|-... +|..-.+|.|+.+.=. ....+.+..+++--++..++++.++.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 3666678888876100 01122245666777777777777764
No 146
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=39.30 E-value=69 Score=35.65 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=58.6
Q ss_pred HHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcC--CEEEEecCcccc-------cccCCCCCCCc
Q 038226 81 LIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSG--LYLQLRIGPYVC-------AEWNFGGFPVW 151 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~viLR~GPYi~-------aEw~~GG~P~W 151 (849)
.|++-.++|-+.+.|=.| ||.+ .+.+|++.|++.| +.|+..+-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455555688888888333 4555 8899999999999 445666656321 57777889999
Q ss_pred cCcC-CCcccccCC-hhHHHHHHHHHHHHHHHHHh
Q 038226 152 LRDI-PGIEFRTNN-APFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 152 L~~~-p~i~~Rt~~-~~f~~~~~~~~~~i~~~~~~ 184 (849)
+.+. .. . .++ +..+++--++..++++.+.+
T Consensus 235 l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9762 11 1 133 34566677778888777765
No 147
>PLN00196 alpha-amylase; Provisional
Probab=39.10 E-value=61 Score=38.01 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEEc-eecc--ccCCCCcc-ee-----ecCcchHHHHHHHHHhcCCEEEEec
Q 038226 79 PDLIAKSKEGGADVIETY-VFWN--AHESIRGQ-YN-----FKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~ty-vfWn--~hEp~~G~-yd-----F~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.+.|.-+|++|+++|-+. ++=+ .|--.+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356667799999999874 4422 12222322 22 3344699999999999999999875
No 148
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=38.93 E-value=52 Score=43.03 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=19.3
Q ss_pred chHHHHHHHHHhcCCEEEEec
Q 038226 115 NDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 115 ~dl~~fl~la~~~GL~viLR~ 135 (849)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999875
No 149
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=38.78 E-value=57 Score=35.30 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|++|++.|-+ .|..++--|.- .+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGE-TDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 35789999999998 67766655543 367888889999999999999997
No 150
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=38.52 E-value=91 Score=26.20 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
..++.++++|+.|++.|.+= -|. ++. ...+|.+++++.||.+|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 47889999999999999872 222 222 456888999999998764
No 151
>PRK03705 glycogen debranching enzyme; Provisional
Probab=37.74 E-value=51 Score=40.80 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCEEEE-ceeccccCCCC---c-----cee----------ecCc-----chHHHHHHHHHhcCCEEEEec
Q 038226 81 LIAKSKEGGADVIET-YVFWNAHESIR---G-----QYN----------FKGK-----NDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvfWn~hEp~~---G-----~yd----------F~G~-----~dl~~fl~la~~~GL~viLR~ 135 (849)
.|.-+|++|+|+|++ .||=...++.. | -|| |... .+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 45422111110 1 011 2221 479999999999999999874
No 152
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.72 E-value=1.2e+02 Score=33.71 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----ccccC----------------CCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVF----WNAHE----------------SIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvf----Wn~hE----------------p~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
+.+...+.|+.|...++|+.+.++- |.+-- +..|.|.-+ |+..+++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 6788999999999999999999876 74421 112344444 999999999999999986
Q ss_pred ec
Q 038226 134 RI 135 (849)
Q Consensus 134 R~ 135 (849)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 55
No 153
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=36.99 E-value=68 Score=37.22 Aligned_cols=70 Identities=11% Similarity=0.254 Sum_probs=47.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCc--chHHHHHHHHHhcCCEEEEecCcccccccC
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVCAEWN 144 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~aEw~ 144 (849)
+.+...+.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|+.++++.+++.|+++++..-|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466778899999999998766655433333 4445665532 289999999999999999999888875543
No 154
>PRK09267 flavodoxin FldA; Validated
Probab=35.82 E-value=1.8e+02 Score=29.04 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=48.6
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE
Q 038226 56 IDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ 132 (849)
Q Consensus 56 idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi 132 (849)
+..-..++++...|+...++..|.+.+.+++...++-..+.+|= ......-.-.| ..-+..+.+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34456689999999888888999999998888878777777773 22111100011 1235666777888896654
No 155
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=35.68 E-value=53 Score=37.31 Aligned_cols=115 Identities=17% Similarity=0.368 Sum_probs=0.0
Q ss_pred CEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHH
Q 038226 91 DVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEE 170 (849)
Q Consensus 91 N~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~ 170 (849)
+.|.+.|.|+.+--+. -=...|+.|+++|+.|+--+ .-||+ +-+.|+.. .+..+ .+.
T Consensus 31 ~yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~----lL~~~----~~~ 87 (339)
T cd06547 31 QYVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED----FLKKD----EDG 87 (339)
T ss_pred hhhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH----HhccC----ccc
Q ss_pred HHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHHHHHHHHHhc--CCccceE
Q 038226 171 MQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGL--GAGVPWV 236 (849)
Q Consensus 171 ~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~--g~~vP~~ 236 (849)
..++.++|+++++.+++ +| +++-+|+..+ .......-.+|++.|++.+++. +..|-|+
T Consensus 88 ~~~~a~kLv~lak~yGf---DG---w~iN~E~~~~--~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 88 SFPVADKLVEVAKYYGF---DG---WLINIETELG--DAEKAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred chHHHHHHHHHHHHhCC---Cc---eEeeeeccCC--cHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
No 156
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.57 E-value=1.8e+02 Score=32.25 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=47.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----cccc-CCC--CcceeecCcchHHHHHHHHHhcCCEEEEecCccccccc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVF----WNAH-ESI--RGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEW 143 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvf----Wn~h-Ep~--~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw 143 (849)
+.+.-.+.|+.|...|+|++..|+- +..+ |-. +|.|.= .|+.++++.|++.|+.||-.+=-.-+.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 4477889999999999999998752 3222 111 344433 49999999999999999976544444443
No 157
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.37 E-value=76 Score=35.91 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=49.9
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEce----------eccccCCC---------CcceeecC---cchHHHHHH
Q 038226 68 IHYPRA---TPEMWPDLIAKSKEGGADVIETYV----------FWNAHESI---------RGQYNFKG---KNDIVKFVK 122 (849)
Q Consensus 68 iHy~R~---~~~~W~d~l~k~Ka~GlN~I~tyv----------fWn~hEp~---------~G~ydF~G---~~dl~~fl~ 122 (849)
+|..|. +.+.-++.++++++.||-+=-+++ .|+-..-. -+.++|.. .-|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455664 456678899999999987555443 34432211 13334431 128999999
Q ss_pred HHHhcCCEEEEecCcccc
Q 038226 123 LVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 123 la~~~GL~viLR~GPYi~ 140 (849)
..++.|++|+|.+=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888775
No 158
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=35.26 E-value=18 Score=32.36 Aligned_cols=38 Identities=13% Similarity=0.378 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcC
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSG 128 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G 128 (849)
.+..|-..+|.+-. .||.|-.|||. +|.+||++|.|.-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTp 57 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTP 57 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCC
Confidence 45678888887764 58999999999 9999999998843
No 159
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.84 E-value=50 Score=37.60 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=44.9
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCC-cceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 68 IHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIR-GQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 68 iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
-++ |.+...=.--.+.+|++|-++|.+.++|.-.++.+ -.- -..+|.++.+.|+++||-+++-+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~---~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDR---KHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHH---HHHHHHHHHHHHHHcCCceEEEE
Confidence 344 54443322236789999999999999999654410 011 12389999999999999998864
No 160
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=34.79 E-value=26 Score=39.14 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=41.3
Q ss_pred EeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE-Eec
Q 038226 60 RRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ-LRI 135 (849)
Q Consensus 60 ~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi-LR~ 135 (849)
..++++-+..--+.| +.|++.|..+-+.|+|+|+- +|+.-. |...|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 445555554444444 78999999999999999997 787543 77899999999999776 554
No 161
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.75 E-value=59 Score=35.44 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCEEEEceecc--ccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 79 PDLIAKSKEGGADVIETYVFWN--AHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn--~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
++.++++|++|++.|...+--+ .++-..+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6789999999999988764411 122222233444 667789999999998653
No 162
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=34.72 E-value=38 Score=37.90 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCE--EE-Eec
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLY--LQ-LRI 135 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~--vi-LR~ 135 (849)
-.|++.+.+++..|+ +|++.-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 443 ~~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 443 LTHESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred CcHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 359999999999998 6888888899999999986 899999999999996 44 676
No 163
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.17 E-value=80 Score=32.51 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred EEEecCCCCC-----cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecC---cchHHHHHHHHHhcCCEEEEecC
Q 038226 65 SAGIHYPRAT-----PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKG---KNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 65 sG~iHy~R~~-----~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G---~~dl~~fl~la~~~GL~viLR~G 136 (849)
-|.+||+|.. .++.+..++.++..+++. ...|--.|..++.+.-+. ...+.+|+++++++|..+++-..
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3899998643 466777888888765432 112334443334332110 13678999999999999999888
Q ss_pred cccc----ccc---CCCCCCCccCcC
Q 038226 137 PYVC----AEW---NFGGFPVWLRDI 155 (849)
Q Consensus 137 PYi~----aEw---~~GG~P~WL~~~ 155 (849)
++-- +-. +...+|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 7521 111 145789999764
No 164
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=32.89 E-value=82 Score=33.30 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
..++|++|++.|-+ .|..++ |..+ |+.+=++.|.++||.+||++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 35789999999888 676666 5444 69999999999999999988
No 165
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=32.28 E-value=64 Score=32.79 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.2
Q ss_pred EEEeCCCCceEEEECCeeeeee
Q 038226 676 ALDLGSMGKGQAWVNGHHIGRY 697 (849)
Q Consensus 676 ~Ldl~gmgKG~~wVNG~~IGRY 697 (849)
.|..++.|+=++||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 5777888999999999999974
No 166
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=32.25 E-value=1.7e+02 Score=34.29 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=59.8
Q ss_pred cCCCC--CcccHHHHHHHHHHcCCCEEEE-ceecccc--C--CCCcceeec-----C-----cchHHHHHHHHH-hcCCE
Q 038226 69 HYPRA--TPEMWPDLIAKSKEGGADVIET-YVFWNAH--E--SIRGQYNFK-----G-----KNDIVKFVKLVG-SSGLY 130 (849)
Q Consensus 69 Hy~R~--~~~~W~d~l~k~Ka~GlN~I~t-yvfWn~h--E--p~~G~ydF~-----G-----~~dl~~fl~la~-~~GL~ 130 (849)
+.+++ +-+.|++.|+.+++.|.|+|.. .+---.. . ....+..|+ . ..|+.+|++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 44554 4568999999999999999973 1111000 0 011122211 1 149999999985 79999
Q ss_pred EEEecCcccccccCCCCC-CCccCcCCCcccccCChhHHHHH
Q 038226 131 LQLRIGPYVCAEWNFGGF-PVWLRDIPGIEFRTNNAPFKEEM 171 (849)
Q Consensus 131 viLR~GPYi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~f~~~~ 171 (849)
++.-+ =||.-.. =.||.++|+.-.--.+.|+++..
T Consensus 93 ~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 93 SMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred EEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 77544 1454433 36999999865555566665543
No 167
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.07 E-value=94 Score=36.74 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=45.9
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 68 IHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 68 iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
..|-|.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45666777888889999999999999999876643 258889999999999886654
No 168
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=31.95 E-value=2.7e+02 Score=25.95 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=31.4
Q ss_pred ceEEEEECC---EEEEEEEee-------eEEEEeeeeecCCCcEEEEEEecC
Q 038226 546 DVLRVFING---QLTGSVIGH-------WVKVVQPVEFQSGYNDLILLSQTV 587 (849)
Q Consensus 546 d~~~VfVNG---~~vGs~~g~-------~~~~~~~v~L~~G~n~LslLse~~ 587 (849)
-.+.++||| +.+++..-. .-+.+.+|.|..|.|+|.|....-
T Consensus 60 ~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 60 GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEEEEEEEEESSS
T ss_pred cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCeeEEEEEEECC
Confidence 478999999 898887631 145566788889999998866543
No 169
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.58 E-value=47 Score=41.07 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=43.5
Q ss_pred eEEEeCCCCceEEEECCeeeeeeeeeccCCCCCCCCCCCCCCCCCCcCcCCCCCCceeEEecCccccccCCcEEEEEeec
Q 038226 675 VALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEET 754 (849)
Q Consensus 675 v~Ldl~gmgKG~~wVNG~~IGRYW~~~~~~~gc~~~c~y~g~y~~~kc~~~cg~P~Q~~YhVPr~~Lk~g~N~LVlfEe~ 754 (849)
..++++.+.++.-+.|+..|||||.. +++-..+ |++.|++.+.+..++++..
T Consensus 540 ~~~~~~~~~~~v~~~~~~~l~~~~~~---------------------------~~~~~~~-v~~~~~~~g~~~~l~~~~~ 591 (673)
T COG1874 540 TTYGLKLWRATVDGEGGTVLARFRED---------------------------GYAGGPA-VTRRWYGGGKAYYLGFRTS 591 (673)
T ss_pred ceeccccceeeeeccCCeEEEEEecc---------------------------CcCCCcc-cchhhhcCcceeEEEeccC
Confidence 45788889999999999999999943 2344456 9999999999999998766
Q ss_pred C
Q 038226 755 G 755 (849)
Q Consensus 755 g 755 (849)
|
T Consensus 592 g 592 (673)
T COG1874 592 G 592 (673)
T ss_pred c
Confidence 5
No 170
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=30.37 E-value=5e+02 Score=29.87 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=55.5
Q ss_pred ceEEEecceEEECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecC--cchHHHHH
Q 038226 45 FNVSYDHRAIIIDGNRRMLISAGIHYPRA-TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKG--KNDIVKFV 121 (849)
Q Consensus 45 ~~v~~d~~~~~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G--~~dl~~fl 121 (849)
..|.. ..+.+.|...+++.|.- -+ ..+.-.+..+.+|+.|+..+.-..|= |+.--|.|.| ...+..+.
T Consensus 105 ~~~~~--~~~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~ 175 (360)
T PRK12595 105 TIVDV--KGEVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILK 175 (360)
T ss_pred CEEEE--CCEEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHH
Confidence 34555 34667655555566651 11 45666777888899999988876555 4444466764 45888889
Q ss_pred HHHHhcCCEEEEec
Q 038226 122 KLVGSSGLYLQLRI 135 (849)
Q Consensus 122 ~la~~~GL~viLR~ 135 (849)
+.|++.||.++-.|
T Consensus 176 ~~~~~~Gl~~~t~v 189 (360)
T PRK12595 176 QVADEYGLAVISEI 189 (360)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988775
No 171
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=30.36 E-value=1.8e+02 Score=30.83 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec-CcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCcc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK-GKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWL 152 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL 152 (849)
.+.++++.++.++++|+.++.+|..... ....+..+ |..|=..-+.+|+++|+. +| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----PG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----CC-----------CEEEE
Confidence 5789999999999999999999988766 22233333 778999999999999982 23 22233
Q ss_pred CcCCCcccccCChhHHHHHHHHHHHHHHHHHhc
Q 038226 153 RDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREE 185 (849)
Q Consensus 153 ~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~ 185 (849)
--+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 222221 23347788999999999998753
No 172
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.91 E-value=2.6e+02 Score=30.12 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeccccCCCC-ccee---e-cCcchHHHHHHHHHhcCCEEEEecCcccccccCCC
Q 038226 72 RATPEMWPDLIAKSKEGGADVIETYVFWNAHESIR-GQYN---F-KGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFG 146 (849)
Q Consensus 72 R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~-G~yd---F-~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~G 146 (849)
.+.++.-+..-+.+++.|+.+...-. ..|.+.+ +.-| . .....+.+.|++|++.|..+|.-.
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~----------- 119 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA----------- 119 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------
Confidence 34566677778888899999876411 1121110 1000 0 011257888999999999876422
Q ss_pred CCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEeccccccc
Q 038226 147 GFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYG 205 (849)
Q Consensus 147 G~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg 205 (849)
|.+.|. ...++...+.+...++.++++.++++ |-+.|||-.+
T Consensus 120 ~~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~G---------V~i~iE~~~~ 161 (283)
T PRK13209 120 GYDVYY--------EQANNETRRRFIDGLKESVELASRAS---------VTLAFEIMDT 161 (283)
T ss_pred Cccccc--------cccHHHHHHHHHHHHHHHHHHHHHhC---------CEEEEeecCC
Confidence 112121 11224444555666777777776432 3556888643
No 173
>PRK15492 triosephosphate isomerase; Provisional
Probab=29.84 E-value=97 Score=33.95 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
..++|++|++.|-+ .|..++-.|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999998 7877776664 3345667778899999999999998
No 174
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=29.16 E-value=43 Score=35.44 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=13.9
Q ss_pred CceEEEECCeeeeeee
Q 038226 683 GKGQAWVNGHHIGRYW 698 (849)
Q Consensus 683 gKG~~wVNG~~IGRYW 698 (849)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 3699999999999874
No 175
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=29.02 E-value=1.3e+02 Score=26.62 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=28.9
Q ss_pred eEEeccccceEEEEECCEEEEEEEeeeEEEEeeeeecCCCcE-EEEEEe
Q 038226 538 TVTIDSMRDVLRVFINGQLTGSVIGHWVKVVQPVEFQSGYND-LILLSQ 585 (849)
Q Consensus 538 ~L~v~~~~d~~~VfVNG~~vGs~~g~~~~~~~~v~L~~G~n~-LslLse 585 (849)
.|........+.|.|||..+... + ....+.|..|.|. |.|-|.
T Consensus 28 ~v~a~~~~~~a~v~vng~~~~~~-~----~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 28 TVTATPEDSGATVTVNGVPVNSG-G----YSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEEECCCCEEEEEcCEEccCC-C----cceeeEccCCCceEEEEEEE
Confidence 34444556789999999876543 1 1234567789898 888774
No 176
>PLN02429 triosephosphate isomerase
Probab=28.98 E-value=98 Score=34.93 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|++|++.|-+ .|..++-.|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIGEK-DEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCCcC-HHHHHHHHHHHHHCcCEEEEEcC
Confidence 35789999998888 677776665432 22333334449999999999998
No 177
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.86 E-value=1.5e+02 Score=32.15 Aligned_cols=89 Identities=20% Similarity=0.344 Sum_probs=56.9
Q ss_pred HHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcC--CEEEEecCcccc-------cccCCCCCCCc
Q 038226 81 LIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSG--LYLQLRIGPYVC-------AEWNFGGFPVW 151 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~viLR~GPYi~-------aEw~~GG~P~W 151 (849)
+|++=-++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.+++.+-|-.. ++|..-++|.|
T Consensus 152 ~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~ 218 (274)
T cd00537 152 RLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDW 218 (274)
T ss_pred HHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHH
Confidence 333334559999998444 3333 7889999999998 557777766543 35666678999
Q ss_pred cCcC-CCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 152 LRDI-PGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 152 L~~~-p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
+.+. .. ...+....+++-.++..++++.+++
T Consensus 219 ~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 219 LLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8762 10 1122334556667777777777764
No 178
>PRK14565 triosephosphate isomerase; Provisional
Probab=28.83 E-value=1e+02 Score=33.34 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|++|++.+-+ .|..++--|.-+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 777776555433 22333334889999999999998
No 179
>PRK14567 triosephosphate isomerase; Provisional
Probab=28.81 E-value=1e+02 Score=33.62 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 83 AKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 83 ~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.++|+.|++.|-+ .|..++--|.- -+..+.+=++.|.++||.+|+++|
T Consensus 79 ~mLkd~G~~yvii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLI-----GHSERRSLFAE-SDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEE-----CcccccCccCC-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4789999999998 77777766653 345677778899999999999998
No 180
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.75 E-value=2.4e+02 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----ccccC----------------------------CCCcceeecCcchHHHHH
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVF----WNAHE----------------------------SIRGQYNFKGKNDIVKFV 121 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvf----Wn~hE----------------------------p~~G~ydF~G~~dl~~fl 121 (849)
+.+...+.|..|...++|+.+.++- |.+-- +..|.|-- .|+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHHH
Confidence 6888999999999999999998763 32111 11234433 4999999
Q ss_pred HHHHhcCCEEEEec
Q 038226 122 KLVGSSGLYLQLRI 135 (849)
Q Consensus 122 ~la~~~GL~viLR~ 135 (849)
+.|++.|+.||-.+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999765
No 181
>PLN02561 triosephosphate isomerase
Probab=28.38 E-value=1e+02 Score=33.60 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=39.7
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
..++|++|++.|-+ .|..++..|.-+ +..+.+=++.|.++||.+||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999998 777777666533 56677778899999999999998
No 182
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.36 E-value=65 Score=34.54 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCC----cceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIR----GQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~----G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667889999999999965 22232111 111111 1368889999999999999886
No 183
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=28.21 E-value=96 Score=39.81 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCCEEEEec
Q 038226 115 NDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 115 ~dl~~fl~la~~~GL~viLR~ 135 (849)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999864
No 184
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.88 E-value=1.1e+02 Score=33.38 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 83 AKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 83 ~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.++|++|++.|-+ .|..++-.|. +.+.++.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999998 7877776664 3356888889999999999999998
No 185
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=27.86 E-value=3.9e+02 Score=31.16 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=37.3
Q ss_pred EeEEEEEEecCCCCCcccH----HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 60 RRMLISAGIHYPRATPEMW----PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 60 ~~~l~sG~iHy~R~~~~~W----~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
..++++|.+.-...++... .+.++++++.++. +|+.+ |.-|+-. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~-------GNHD~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLA-------GNHDSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEc-------CCCCChh--hhhhHHHHHHHCCcEEEecc
Confidence 3577888885433344332 3456677777654 44444 4444322 24455677789999987543
No 186
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.28 E-value=1.5e+02 Score=33.32 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=77.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--ccc--c-CC------------------------CCcceeecCcchHHHHHHHH
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVF--WNA--H-ES------------------------IRGQYNFKGKNDIVKFVKLV 124 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvf--Wn~--h-Ep------------------------~~G~ydF~G~~dl~~fl~la 124 (849)
+.+...+.|+.|...++|+...++- |.+ . .| ..|.|. ..|+..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888999999999999999997543 221 1 11 122232 24999999999
Q ss_pred HhcCCEEEEecCcccccccCCCCCCCccCcCCCccccc---------CChhHHHHHHHHHHHHHHHHHhcccccccCCcE
Q 038226 125 GSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRT---------NNAPFKEEMQRFVKKIVDLMREEMLFSWQGGPI 195 (849)
Q Consensus 125 ~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt---------~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpI 195 (849)
++.|+.||-.+=---++ =+|+...|.+..+. -| +-.+++-+|++.|++.+.+ +|- ..++.
T Consensus 92 ~~rgI~vIPEID~PGH~-------~a~~~~~pel~~~~~~~~~~~~~l~-~~~~~t~~f~~~l~~E~~~--~f~-~~~~~ 160 (326)
T cd06564 92 KDRGVNIIPEIDSPGHS-------LAFTKAMPELGLKNPFSKYDKDTLD-ISNPEAVKFVKALFDEYLD--GFN-PKSDT 160 (326)
T ss_pred HHcCCeEeccCCCcHHH-------HHHHHhhHHhcCCCcccCCCccccc-CCCHHHHHHHHHHHHHHHH--hcC-CCCCE
Confidence 99999998654211111 13443333322221 01 1224555666666666663 432 12333
Q ss_pred EEecccccccccccc----cCcccHHHHHHHHHHHHhcCCc
Q 038226 196 IMLQIENEYGNMESS----YGQQGKDYVKWAASMALGLGAG 232 (849)
Q Consensus 196 I~~QIENEyg~~~~~----~~~~~~~Y~~~l~~~~~~~g~~ 232 (849)
| +| |.-+.. ....-..|++.+.+.+++.|..
T Consensus 161 ~--Hi----GgDE~~~~~~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 161 V--HI----GADEYAGDAGYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred E--Ee----ccccccccCccHHHHHHHHHHHHHHHHHcCCe
Confidence 3 33 221110 1112246777788888887765
No 187
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=27.09 E-value=89 Score=36.39 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEE-EEecCcccccccCCCCCC
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYL-QLRIGPYVCAEWNFGGFP 149 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~v-iLR~GPYi~aEw~~GG~P 149 (849)
..+.-+..|+.+|+.|+|+|-++++=..--+.+-.|.= --.|-...++.+.+.|..+ +|-+| ||||
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 45567889999999999999998765543333333321 1235666777888899985 58775 8887
No 188
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.73 E-value=50 Score=32.43 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=35.4
Q ss_pred chHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHHhcccccccCCc
Q 038226 115 NDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREEMLFSWQGGP 194 (849)
Q Consensus 115 ~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGp 194 (849)
.||.-||++|++.|+.|++=+-| |++.|. +.-|+ =++.-+.++++|-.++++ +|-.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy---------dytG~--------~~~~r~~~y~kI~~~~~~------~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY---------DYTGL--------SKEMRQEYYKKIKYQLKS------QGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH---------HHTT----------HHHHHHHHHHHHHHHHT------TT--
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH---------HHhCC--------CHHHHHHHHHHHHHHHHH------CCCE
Confidence 39999999999999999876655 566663 11121 135557788888888874 4555
Q ss_pred EE
Q 038226 195 II 196 (849)
Q Consensus 195 II 196 (849)
|+
T Consensus 92 v~ 93 (130)
T PF04914_consen 92 VA 93 (130)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 189
>PRK06703 flavodoxin; Provisional
Probab=26.42 E-value=2.5e+02 Score=27.35 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=60.0
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 56 IDGNRRMLISAGIHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 56 idGk~~~l~sG~iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+..-..++++...+-.-.+|..+.+.+..+++.-++.....+|-...-. |.. .......+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3344456665555534445667788888887766665555566221100 110 12345667777889999877653
Q ss_pred CcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 136 GPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 136 GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
+- +++-.++..-+++.+.|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 01111234677888899999887766
No 190
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.24 E-value=99 Score=38.53 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCEEEE-ceeccccCCCC---c-ceee----------------cC-----cchHHHHHHHHHhcCCEEEEe
Q 038226 81 LIAKSKEGGADVIET-YVFWNAHESIR---G-QYNF----------------KG-----KNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 81 ~l~k~Ka~GlN~I~t-yvfWn~hEp~~---G-~ydF----------------~G-----~~dl~~fl~la~~~GL~viLR 134 (849)
.|.-+|++|+++|+. .|+.-..|+.. | .|+| .+ .+.|..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 388899999999996 67765555543 2 2222 22 247888899999999999987
Q ss_pred c
Q 038226 135 I 135 (849)
Q Consensus 135 ~ 135 (849)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 191
>PLN02877 alpha-amylase/limit dextrinase
Probab=26.24 E-value=1.2e+02 Score=39.32 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCEEEEec
Q 038226 116 DIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 116 dl~~fl~la~~~GL~viLR~ 135 (849)
++.++++.++++||.|||-.
T Consensus 467 efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 69999999999999999874
No 192
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=26.21 E-value=1.5e+02 Score=36.58 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=54.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-ee-----ccccC-CC-Ccceee---------cCcchHHHHHHHHHhcCCEEEEecC
Q 038226 74 TPEMWPDLIAKSKEGGADVIETY-VF-----WNAHE-SI-RGQYNF---------KGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~ty-vf-----Wn~hE-p~-~G~ydF---------~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+.+|+ -++++|+++|-+- ++ |...- |. -|-||- ....|++++++.|+++||.||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566675 5788999999862 33 43211 32 456663 3346999999999999999996543
Q ss_pred --------cccccccCCCCCCCccC
Q 038226 137 --------PYVCAEWNFGGFPVWLR 153 (849)
Q Consensus 137 --------PYi~aEw~~GG~P~WL~ 153 (849)
||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 48888999888898884
No 193
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.68 E-value=1.2e+02 Score=33.48 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCC--CCc--ceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHES--IRG--QYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp--~~G--~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
.++..++.++++++.|.+.|-+|.-+..--+ .++ .++- ..+.+.+++|+++|+.|.+=
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEE
Confidence 4677889999999999999999874321111 112 2332 37889999999999987764
No 194
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=25.58 E-value=1.1e+02 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=25.4
Q ss_pred cceEEEEECCEEEEEEEeeeEEEEeeeeecCCCcEEEE
Q 038226 545 RDVLRVFINGQLTGSVIGHWVKVVQPVEFQSGYNDLIL 582 (849)
Q Consensus 545 ~d~~~VfVNG~~vGs~~g~~~~~~~~v~L~~G~n~Lsl 582 (849)
+-...|||||+++|......|.+ +.+.+|+++|+.
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~---~~v~pG~h~i~~ 74 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFY---VEVPPGKHTISA 74 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEE---EEECCCcEEEEE
Confidence 45667899999999987544332 246689888887
No 195
>PRK14566 triosephosphate isomerase; Provisional
Probab=25.51 E-value=1.3e+02 Score=33.14 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|++|++.|-+ .|..++..|.- -+..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999988 77777766643 345667788899999999999997
No 196
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.41 E-value=3.2e+02 Score=29.67 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEE--EEecCcccccccCCCCCCCccCcCC
Q 038226 79 PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYL--QLRIGPYVCAEWNFGGFPVWLRDIP 156 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~v--iLR~GPYi~aEw~~GG~P~WL~~~p 156 (849)
.+.++.+++.|+++||+++- .|.--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999643 22211111112337788888899998863 33334443
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHH
Q 038226 157 GIEFRTNNAPFKEEMQRFVKKIVDLMR 183 (849)
Q Consensus 157 ~i~~Rt~~~~f~~~~~~~~~~i~~~~~ 183 (849)
+.+=+.|+..++...+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777666666666665554
No 197
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.22 E-value=1.1e+02 Score=37.58 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=44.3
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEE
Q 038226 68 IHYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQ 132 (849)
Q Consensus 68 iHy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~vi 132 (849)
+=|.|.|.+.-+..++++++.|+++|+++...|.. ..+...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 45667777888889999999999999998766653 378899999999999864
No 198
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.11 E-value=1.3e+02 Score=32.89 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
..++|++|++.|-+ -|..++-.|+-+ ...+.+=++.|.++||..||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 34689999999988 676665555433 33566788999999999999987
No 199
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.92 E-value=2.2e+02 Score=32.71 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 77 MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 77 ~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.|...++++++.|++.|..+...-.-.... +..-...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~------~~~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDEN------GKIVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccc------cccCCHHHHHHHHHcCCEEEEEE
Confidence 488889999999999887654222211111 11234688999999999999664
No 200
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.58 E-value=1.5e+02 Score=32.40 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 73 ATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 73 ~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
.|.+.=+++++++.+.|++.|+++++.+- + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45556788999999999999999887654 2 2788999999999998775
No 201
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=24.16 E-value=1.5e+02 Score=29.22 Aligned_cols=92 Identities=11% Similarity=0.207 Sum_probs=46.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec-CcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCcc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK-GKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWL 152 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL 152 (849)
.+.+.++.++.++++|+..+-+|.....+. ......++ |..|=..-+..|++.|+. . |-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 468899999999999999999998872222 11112222 667888999999999983 2 233333
Q ss_pred CcCCCcccccCChhHHHHHHHHHHHHHHHHHhc
Q 038226 153 RDIPGIEFRTNNAPFKEEMQRFVKKIVDLMREE 185 (849)
Q Consensus 153 ~~~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~~ 185 (849)
-- .+-..+..+...+..|++.+.+.|...
T Consensus 100 av----D~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AV----DYDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred Ee----ecCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 22 122356777888888999998888753
No 202
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.08 E-value=80 Score=35.21 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----ccccCC------CCc---------ceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVF----WNAHES------IRG---------QYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvf----Wn~hEp------~~G---------~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
+.+.-.+.|..|-..++|++..++- |.+--+ ..| .|.- .|+..+++.|++.|+.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6678889999999999999998875 432211 122 3333 49999999999999999965
Q ss_pred c
Q 038226 135 I 135 (849)
Q Consensus 135 ~ 135 (849)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 203
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.94 E-value=99 Score=33.26 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=57.5
Q ss_pred eEeEEEEEEecCCC-CCcccHHHHHHHHHHcCCCEEEEceeccccCC-----------CCcceeecCcchHHHHHHHHHh
Q 038226 59 NRRMLISAGIHYPR-ATPEMWPDLIAKSKEGGADVIETYVFWNAHES-----------IRGQYNFKGKNDIVKFVKLVGS 126 (849)
Q Consensus 59 k~~~l~sG~iHy~R-~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp-----------~~G~ydF~G~~dl~~fl~la~~ 126 (849)
+-+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. +-.|. .+...++.|..+|..++.+.+.
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~ 198 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLAR 198 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHh
Confidence 33444455555555 589999999999998887776442 22211 2455778898999999999999
Q ss_pred cCCEEEEecCccccc
Q 038226 127 SGLYLQLRIGPYVCA 141 (849)
Q Consensus 127 ~GL~viLR~GPYi~a 141 (849)
..+.+-...||.--|
T Consensus 199 ~~l~I~~Dsg~~HlA 213 (279)
T cd03789 199 ADLVVTNDSGPMHLA 213 (279)
T ss_pred CCEEEeeCCHHHHHH
Confidence 999988888875544
No 204
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=23.85 E-value=59 Score=35.49 Aligned_cols=46 Identities=33% Similarity=0.625 Sum_probs=35.5
Q ss_pred CCeeeeeCCCCCeEeEEEeeeeCC--Cccccc--ccccc--cccCCcccccccC
Q 038226 802 APEMHLHCQDGYIISSIEFASYGT--PQGRCQ--KFSRG--NCHAPMSLSVVSE 849 (849)
Q Consensus 802 ~~~~~l~C~~g~~is~i~fAsfG~--p~G~Cg--~f~~g--~c~a~~s~~~v~k 849 (849)
+..+.|+||.|.+|| |+=|=||. +. .|- +++.- +|-.++|++|+++
T Consensus 43 G~~i~L~CP~~dvIs-v~sanYGR~~~~-iC~pd~~~~~Si~C~~p~s~~i~~~ 94 (265)
T KOG4729|consen 43 GERITLSCPRGDVIS-VQSANYGRFSDK-ICDPDPGREESINCYLPKSFSILSS 94 (265)
T ss_pred CceEEEEcCCCCEEE-EEecccCccccc-ccCCccccccchhccChHHHHHHHH
Confidence 447999999998886 78899997 44 884 45555 4999999888753
No 205
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.82 E-value=1.3e+02 Score=32.84 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=56.5
Q ss_pred eEEEecceEEECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec--CcchHHHHHH
Q 038226 46 NVSYDHRAIIIDGNRRMLISAGIHYPRA-TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK--GKNDIVKFVK 122 (849)
Q Consensus 46 ~v~~d~~~~~idGk~~~l~sG~iHy~R~-~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~--G~~dl~~fl~ 122 (849)
.|... .+.+.+..++++.| +-.+ ..+.-.+..+++|+.|....+.|+|=+...| |.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 45553 35666555667877 2222 4556667788889999998888888755444 4455 4567888888
Q ss_pred HHHhcCCEEEEec
Q 038226 123 LVGSSGLYLQLRI 135 (849)
Q Consensus 123 la~~~GL~viLR~ 135 (849)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 8999999888765
No 206
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=23.34 E-value=1e+02 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=22.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhc
Q 038226 6 NNRALLQCLALSVYPMMMMMMMIHLSC 32 (849)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (849)
|+-..+..+|+.++|+.+++.++.-+.
T Consensus 4 N~lgfiAt~Lfi~iPt~FLlilYvqT~ 30 (35)
T PRK04989 4 NDLGFVASLLFVLVPTVFLIILYIQTN 30 (35)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheecc
Confidence 667788999999999999998884433
No 207
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=23.29 E-value=58 Score=36.61 Aligned_cols=90 Identities=18% Similarity=0.401 Sum_probs=49.9
Q ss_pred EEEEEEecCC------CCCcccHHHHHHHHHHc-CCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 62 MLISAGIHYP------RATPEMWPDLIAKSKEG-GADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 62 ~l~sG~iHy~------R~~~~~W~d~l~k~Ka~-GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
.+.||. |.+ +++.+-|++.+|+--.. |+|-++-| |..-++.. ....+.|++|+++|-|.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEEee
Confidence 346666 833 44556677777777665 88888875 55555443 36778899999999998321
Q ss_pred cCcccccccCC-CCCCCccCcCCCcccccCChhHHHHHHHHHH
Q 038226 135 IGPYVCAEWNF-GGFPVWLRDIPGIEFRTNNAPFKEEMQRFVK 176 (849)
Q Consensus 135 ~GPYi~aEw~~-GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~ 176 (849)
+=++ +.+-.|+-. ..++.|++++++|-+
T Consensus 173 -------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE-------QRNPEFKDACEKYSE 201 (324)
T ss_dssp ----------GGGHHHHHCCC-------CCSHHHHHHHHHHGG
T ss_pred -------cCCChHHHHHhhhh-------ccCHHHHHHHHHhhh
Confidence 1111 112233322 157888888887744
No 208
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.23 E-value=1.1e+03 Score=26.62 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHHHhcCCcc-eeeeeeeccCCCCCCCCCCCccccccCCCCCCCCCCCCchhhHHHHHHHHHHHhhcc
Q 038226 286 PHRPVEDLAFAVARFFQRGGSF-MNYYMYFGGTNFGRTSGGPFYITSYDYDAPIDEYGLLSEPKWGHLKDLHAAIKLCEP 364 (849)
Q Consensus 286 ~~r~~ed~a~~v~~~~~~ggs~-~NyYM~hGGTNfG~~~g~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~lh~~l~~~~~ 364 (849)
..++++.+...+.+...+||++ +|. +.+.+|.+.++--..||++.+.|+...+
T Consensus 289 ~~ks~~~li~~l~~~vs~ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 289 KYKSADELIDILVDSVSRNGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp GS--HHHHHHHHHHHHTBTEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHhccCceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 4568888888888999999874 232 3456788888888899999999986544
No 209
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.11 E-value=1.8e+02 Score=36.22 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHcCCCEE--EEceeccccCCCCcceeecCc--chHHHHHHHHHhcCCEEEEecCccccc
Q 038226 75 PEMWPDLIAKSKEGGADVI--ETYVFWNAHESIRGQYNFKGK--NDIVKFVKLVGSSGLYLQLRIGPYVCA 141 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I--~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~viLR~GPYi~a 141 (849)
.+...+.++++|+.||-+= .+=.+|.-. -.-+.|.|+-. -|..++++..++.|+++++.+=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 3446778899999998643 333455321 11245666533 289999999999999999999888853
No 210
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.97 E-value=67 Score=33.65 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=51.1
Q ss_pred EeEEEEEEecCC-CCCcccHHHHHHHHHHcCCCEEEEceeccccC--------CCCc----ceeecCcchHHHHHHHHHh
Q 038226 60 RRMLISAGIHYP-RATPEMWPDLIAKSKEGGADVIETYVFWNAHE--------SIRG----QYNFKGKNDIVKFVKLVGS 126 (849)
Q Consensus 60 ~~~l~sG~iHy~-R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hE--------p~~G----~ydF~G~~dl~~fl~la~~ 126 (849)
-+.+.-|.-+.. |++.|.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.+++.
T Consensus 107 ~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 107 YIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp EEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred eEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 344444544544 569999999999999998 55667887665 1233 6889999999999999999
Q ss_pred cCCEEEEecCc
Q 038226 127 SGLYLQLRIGP 137 (849)
Q Consensus 127 ~GL~viLR~GP 137 (849)
..+.|-.-.||
T Consensus 184 a~~~I~~Dtg~ 194 (247)
T PF01075_consen 184 ADLVIGNDTGP 194 (247)
T ss_dssp SSEEEEESSHH
T ss_pred CCEEEecCChH
Confidence 99988887776
No 211
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=22.86 E-value=1e+02 Score=35.79 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEE-ceec---cccCCCCcce-----eecCcchHHHHHHHHHhcCCEEEEec
Q 038226 80 DLIAKSKEGGADVIET-YVFW---NAHESIRGQY-----NFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~t-yvfW---n~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.|.-+|++|+++|-+ .++= ..|--..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6777789999999964 2331 1221111000 57778899999999999999999753
No 212
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=22.80 E-value=2.2e+02 Score=31.10 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCcccccCChhHHHHHHHHHHHHH-------HHHHhcccc
Q 038226 116 DIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTNNAPFKEEMQRFVKKIV-------DLMREEMLF 188 (849)
Q Consensus 116 dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i~~Rt~~~~f~~~~~~~~~~i~-------~~~~~~~l~ 188 (849)
...++++.|++.|-..+|-| |-.-||+|.|... ++.+-+.++.=+++.++|...-+ ++++. |-
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~--la 107 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAE--LA 107 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHHH--Hh
Confidence 45788999999999999987 6777999999865 23333334444444444433221 12221 11
Q ss_pred cccCCcEEEeccccc
Q 038226 189 SWQGGPIIMLQIENE 203 (849)
Q Consensus 189 ~~~gGpII~~QIENE 203 (849)
..+.=.+++--||.|
T Consensus 108 ~~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 108 KKNNVYLVMGAIERE 122 (337)
T ss_pred hcCCeEEEEEEEecc
Confidence 233445666678888
No 213
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=22.78 E-value=69 Score=40.63 Aligned_cols=76 Identities=20% Similarity=0.366 Sum_probs=50.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEE------------ceeccccC------CCCcceeecCcchHHHHHHHHHh-cCCEEEEe
Q 038226 74 TPEMWPDLIAKSKEGGADVIET------------YVFWNAHE------SIRGQYNFKGKNDIVKFVKLVGS-SGLYLQLR 134 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~t------------yvfWn~hE------p~~G~ydF~G~~dl~~fl~la~~-~GL~viLR 134 (849)
|-+.|+.+|+++|+.|.|+|.. |-.-+.|| ..-++|.|+ |+...++-+++ -++.-|--
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 5689999999999999999973 33333333 233568888 99999988865 46554432
Q ss_pred cCcccccccCCCC-CCCccCcCCCc
Q 038226 135 IGPYVCAEWNFGG-FPVWLRDIPGI 158 (849)
Q Consensus 135 ~GPYi~aEw~~GG-~P~WL~~~p~i 158 (849)
+ =|+.-. =-.||.++|+.
T Consensus 217 v------V~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V------VYNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h------hhhccccCCchhHhCchh
Confidence 2 133222 24688777753
No 214
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.47 E-value=1.1e+02 Score=32.95 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec-CcchHHHHHHHHHhcCCEEEEec
Q 038226 76 EMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK-GKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 76 ~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+++++.|+.++++|.+.|.+.-+-...++.... .++ -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEE-TRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHH-HHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 457888999999999999863110000111100 011 01357788899999999999886
No 215
>PLN02389 biotin synthase
Probab=22.10 E-value=1.2e+02 Score=35.10 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEcee--ccccCCCCcceeecCcchHHHHHHHHHhcCCEE
Q 038226 79 PDLIAKSKEGGADVIETYVF--WNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYL 131 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvf--Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~v 131 (849)
++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 216
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=21.70 E-value=64 Score=34.94 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecC
Q 038226 82 IAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 82 l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
.+++|+.|++.|-+ .|..++--|. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45799999999988 6665554444 4567889999999999999999997
No 217
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.66 E-value=1.7e+02 Score=23.66 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEE
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYL 131 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~v 131 (849)
|..-.+.+.-+.+.|+|.+.++. +..++.....+.|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44556788889999999998876 3322234455555433 4889999999999765
No 218
>PLN02784 alpha-amylase
Probab=21.54 E-value=1.8e+02 Score=37.18 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEEceeccccC---CCCcc-ee----ecCcchHHHHHHHHHhcCCEEEEec
Q 038226 80 DLIAKSKEGGADVIETYVFWNAHE---SIRGQ-YN----FKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 80 d~l~k~Ka~GlN~I~tyvfWn~hE---p~~G~-yd----F~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
+.|.-++++|+++|.+.=+..... -.+.. |+ |....+|..+|+.|+++||.||+-+
T Consensus 525 ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 525 EKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456677999999999753221111 11111 22 3344699999999999999999875
No 219
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.31 E-value=1.4e+02 Score=32.60 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 79 PDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 79 ~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
.++|+.+.+.|++.|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
No 220
>PLN02540 methylenetetrahydrofolate reductase
Probab=21.26 E-value=2e+02 Score=35.00 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcC--CEEEEecCcccc-------cccCCCCCCCccCc
Q 038226 84 KSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSG--LYLQLRIGPYVC-------AEWNFGGFPVWLRD 154 (849)
Q Consensus 84 k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~viLR~GPYi~-------aEw~~GG~P~WL~~ 154 (849)
+=.++|.+.|.|=.| ||.+ .+.+|++.|+++| +.+|..+-|-.. ++|..--+|.|+.+
T Consensus 164 ~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i~~ 230 (565)
T PLN02540 164 EKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITA 230 (565)
T ss_pred HHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHHHH
Confidence 333579999999433 5555 7889999999998 667777777553 34665567888876
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 038226 155 IPGIEFRTNNAPFKEEMQRFVKKIVDLMRE 184 (849)
Q Consensus 155 ~p~i~~Rt~~~~f~~~~~~~~~~i~~~~~~ 184 (849)
.=. ....+++..++.--++..++++.+.+
T Consensus 231 rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 231 ALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 210 13345566777777788888888764
No 221
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=21.02 E-value=1.3e+02 Score=32.59 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=42.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeec-Ccc-------hHHH---HH-HHHHhcCCEEEEecCcccc
Q 038226 75 PEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFK-GKN-------DIVK---FV-KLVGSSGLYLQLRIGPYVC 140 (849)
Q Consensus 75 ~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~-G~~-------dl~~---fl-~la~~~GL~viLR~GPYi~ 140 (849)
.+..++.++.+.++|+++-.. .||-.||||... +-. ++.. .+ ++|+++||.+.+-|=|+..
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~ 140 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSG 140 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTT
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCC
Confidence 456788899999999999888 999999999764 111 1111 12 4568899999998877653
No 222
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=20.94 E-value=1.5e+02 Score=31.02 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=42.5
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCccee-ecCc--chHHHHHHHHHhcCCEEEEecCccccc--cc
Q 038226 69 HYPRATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYN-FKGK--NDIVKFVKLVGSSGLYLQLRIGPYVCA--EW 143 (849)
Q Consensus 69 Hy~R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~yd-F~G~--~dl~~fl~la~~~GL~viLR~GPYi~a--Ew 143 (849)
-+.|+..++--..-+.+||.|+.++-.---=..|-..+=-|- -.|. +|+ ++| +..=++|+||||..|- |.
T Consensus 102 gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGEvE~~v---~eL--~F~~~~i~RPG~ll~~R~es 176 (238)
T KOG4039|consen 102 GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGEVERDV---IEL--DFKHIIILRPGPLLGERTES 176 (238)
T ss_pred ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccchhhhhh---hhc--cccEEEEecCcceecccccc
Confidence 344789999999999999999988765333333332221110 1111 111 111 2234689999998874 44
Q ss_pred CCCC
Q 038226 144 NFGG 147 (849)
Q Consensus 144 ~~GG 147 (849)
.-|+
T Consensus 177 r~ge 180 (238)
T KOG4039|consen 177 RQGE 180 (238)
T ss_pred cccc
Confidence 4444
No 223
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=20.76 E-value=4.4e+02 Score=29.04 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=61.2
Q ss_pred HHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEecCcccccccCCCCCCCccCcCCCc-ccccC
Q 038226 85 SKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRIGPYVCAEWNFGGFPVWLRDIPGI-EFRTN 163 (849)
Q Consensus 85 ~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~GPYi~aEw~~GG~P~WL~~~p~i-~~Rt~ 163 (849)
--...|+.|.. +|-...+ .|.. .+. ...++++.|+++|+.|++++| .|..|++ .+.. ..-..
T Consensus 21 ~~~~~lt~v~p--~w~~~~~-~g~~--~~~-~~~~~~~~a~~~~~kv~~~i~-----~~~~~~~------~~~~~~~~l~ 83 (313)
T cd02874 21 ANAPYLTYIAP--FWYGVDA-DGTL--TGL-PDERLIEAAKRRGVKPLLVIT-----NLTNGNF------DSELAHAVLS 83 (313)
T ss_pred HhcCCCCEEEE--EEEEEcC-CCCC--CCC-CCHHHHHHHHHCCCeEEEEEe-----cCCCCCC------CHHHHHHHhc
Confidence 34456777764 3443333 3443 333 346899999999999999986 2322221 0000 00012
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcccccccCCcEEEecccccccccccccCcccHHHHHHHHHHHHhc
Q 038226 164 NAPFKEEMQRFVKKIVDLMREEMLFSWQGGPIIMLQIENEYGNMESSYGQQGKDYVKWAASMALGL 229 (849)
Q Consensus 164 ~~~f~~~~~~~~~~i~~~~~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~Y~~~l~~~~~~~ 229 (849)
|+ +..++|++.|++.++++++ + ++.|+=|+... .....|...|+++....
T Consensus 84 ~~---~~r~~fi~~iv~~l~~~~~---D-----GidiDwE~~~~-----~d~~~~~~fl~~lr~~l 133 (313)
T cd02874 84 NP---EARQRLINNILALAKKYGY---D-----GVNIDFENVPP-----EDREAYTQFLRELSDRL 133 (313)
T ss_pred CH---HHHHHHHHHHHHHHHHhCC---C-----cEEEecccCCH-----HHHHHHHHHHHHHHHHh
Confidence 33 2346889999999987654 2 33444455321 13345666666655543
No 224
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.76 E-value=1e+03 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=37.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEE
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQL 133 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viL 133 (849)
...-+++.+++++++|++.|+..- .+.+..+ ..++..+.++++++||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEe
Confidence 455688999999999999999965 1112111 11389999999999999765
No 225
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.46 E-value=33 Score=35.43 Aligned_cols=66 Identities=24% Similarity=0.449 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCC---CcccHHHHHHHHHHcCCCEEE--EceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEe
Q 038226 61 RMLISAGIHYPRA---TPEMWPDLIAKSKEGGADVIE--TYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 61 ~~l~sG~iHy~R~---~~~~W~d~l~k~Ka~GlN~I~--tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR 134 (849)
..+-+|--.|.|+ .|-.-++ -+.++|++++- |-| .--.--|||-...+|..|.++|++|||.+-|-
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccHH---HHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3455666666675 3443443 46788988654 422 22233589988889999999999999988763
No 226
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.36 E-value=1.2e+02 Score=34.74 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=41.8
Q ss_pred CCeEeEEEEEEecCC---------------------CCCcccHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcc
Q 038226 57 DGNRRMLISAGIHYP---------------------RATPEMWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKN 115 (849)
Q Consensus 57 dGk~~~l~sG~iHy~---------------------R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~ 115 (849)
.+++.++.|.+-||. |+..+.-++.|++.++.|.--+ .|.=+.-...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 346677777778884 3333445555666677776322 233334555556665
Q ss_pred hHHHHHHHHHhcCCEEEEe
Q 038226 116 DIVKFVKLVGSSGLYLQLR 134 (849)
Q Consensus 116 dl~~fl~la~~~GL~viLR 134 (849)
||.+..++|+++++++++-
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8888888888888887774
No 227
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.32 E-value=2e+02 Score=31.49 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=40.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeccccCCCC---cceeecCcchHHHHHHHHHhc-CCEEEEecCc
Q 038226 74 TPEMWPDLIAKSKEGGADVIETYVFWNAHESIR---GQYNFKGKNDIVKFVKLVGSS-GLYLQLRIGP 137 (849)
Q Consensus 74 ~~~~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~---G~ydF~G~~dl~~fl~la~~~-GL~viLR~GP 137 (849)
.++.|.+..++++++|++.|++.+. -|.. |..--.....+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNIS----CPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC----CCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5789999999999999999999643 3322 221111123566778888776 7777776653
No 228
>PRK09248 putative hydrolase; Validated
Probab=20.18 E-value=2.5e+02 Score=29.91 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=40.0
Q ss_pred EeEEEEEEecCCCCCcc----cHHHHHHHHHHcCCCEEEEceeccccCCCCcceeecCcchHHHHHHHHHhcCCEEEEec
Q 038226 60 RRMLISAGIHYPRATPE----MWPDLIAKSKEGGADVIETYVFWNAHESIRGQYNFKGKNDIVKFVKLVGSSGLYLQLRI 135 (849)
Q Consensus 60 ~~~l~sG~iHy~R~~~~----~W~d~l~k~Ka~GlN~I~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~viLR~ 135 (849)
++=++-|++|+...++. +-+..++.+++++++++.=.-.. .++ .+..+.++.+++.|+.+=+..
T Consensus 93 ~~D~vi~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~--------~~~----~~~~~~~~~~~~~g~~lEvN~ 160 (246)
T PRK09248 93 KLDIVIAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNP--------KYP----IDIEAVVKAAKEHNVALEINN 160 (246)
T ss_pred hCCEEEEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCC--------CCc----ccHHHHHHHHHHhCCEEEEEC
Confidence 34457788886644433 33455666766777776643211 122 245677888889999766665
Q ss_pred Ccc
Q 038226 136 GPY 138 (849)
Q Consensus 136 GPY 138 (849)
++.
T Consensus 161 ~~l 163 (246)
T PRK09248 161 SSF 163 (246)
T ss_pred CCC
Confidence 543
No 229
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.04 E-value=1.1e+02 Score=33.28 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceecc-cc---CCCCcceee-cCcchHHHHHHHHHhcCCEEEEecC
Q 038226 72 RATPEMWPDLIAKSKEGGADVIETYVFWN-AH---ESIRGQYNF-KGKNDIVKFVKLVGSSGLYLQLRIG 136 (849)
Q Consensus 72 R~~~~~W~d~l~k~Ka~GlN~I~tyvfWn-~h---Ep~~G~ydF-~G~~dl~~fl~la~~~GL~viLR~G 136 (849)
+.+++.|+++.+.+|+.|+..+.|.+--. +. +...-.|-- |+...=..+|+.+++.|+-|||-+|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 46899999999999999999999965321 11 111222221 3444445689999999999999987
Done!