BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038229
(467 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 173 SLTSTKNAMRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRS 229
S+ ++ C IL +L+ K W F PVD +L L DYHDIIK PMDL TV+
Sbjct: 1 SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKR 60
Query: 230 KLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
K+EN Y+ QEFA DVRL F+N YNP H V AMA L FE + K+
Sbjct: 61 KMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL +L+ K W F PVD +L L DYHDIIK PMDL TV+ K+EN Y+
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
QEFA DVRL F+N YNP H V AMA L FE + K+
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQ---GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C EIL +++ K W F PVD +L L +Y+D++K PMDLGT++ K++N YK
Sbjct: 16 LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
EFA DVRL F N YNP H V AMA TL FE F K+
Sbjct: 76 DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKI 119
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 97.4 bits (241), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL +L+ K W F PVD +L L DYHDIIK PMDL TV+ K+EN Y+
Sbjct: 7 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
QEFA DVRL F+N YNP H V AMA L FE + K+
Sbjct: 67 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 110
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL ++ K W F PVDV +L L DY DIIK PMD+ T++SKLE Y+
Sbjct: 24 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 83
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
QEF DVRL F+N YNP H V AMA L FE F K+
Sbjct: 84 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL ++ K W F PVDV +L L DY DIIK PMD+ T++SKLE Y+
Sbjct: 22 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 81
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
QEF DVRL F+N YNP H V AMA L FE F K+
Sbjct: 82 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 125
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/112 (44%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 173 SLTSTKNAMRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRS 229
S+ +R C IL +++ K W F PVD +L L DYHDIIK PMDL TV+
Sbjct: 1 SMGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKR 60
Query: 230 KLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
K++ Y Q FA DVRL F+N YNP H V AMA L FE F K+
Sbjct: 61 KMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 112
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
+R C IL +++ K W F PVD +L L DYHDIIK PMDL TV+ K++ Y
Sbjct: 14 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 73
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
Q FA DVRL F+N YNP H V AMA L FE F K+
Sbjct: 74 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL ++ K W F PVDV +L L DY DIIK PMD+ T++SKLE Y+
Sbjct: 3 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 62
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
QEF DVRL F+N YNP H V AMA L FE F K+
Sbjct: 63 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 106
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 92.4 bits (228), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL ++ K W F PVDV +L L DY DIIK PMD+ T++SKLE+ Y+
Sbjct: 11 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYR 70
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
QEF DVRL F+N YNP H V AMA L FE F K+ + +
Sbjct: 71 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPE 119
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K + W F PVD V L L DY+ IIK PMD+GT++ +LENN Y QE +D
Sbjct: 33 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 92
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQ 285
F N +YN G + MAE L F Q +L ++
Sbjct: 93 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE 131
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K + W F PVD V L L DY+ IIK PMD+GT++ +LENN Y QE +D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQ 285
F N +YN G + MAE L F Q +L ++
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE 127
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K + W F PVD V L L DY+ IIK PMD+GT++ +LENN Y QE +D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQ 285
F N +YN G + MAE L F Q +L ++
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE 127
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K + W F PVD V L L DY+ IIK PMD+GT++ +LENN Y QE +D
Sbjct: 49 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 108
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
F N +YN G + MAE L F Q +L
Sbjct: 109 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 143
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
++ L K + W F PVD V L L DYH IIK+PMD+GT++ +LENN Y E +D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
F N +YN + MA+TL F Q + +++Q
Sbjct: 100 NTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
++ L K + W F PVD V L L DYH IIK+PMD+GT++ +LENN Y E +D
Sbjct: 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDF 99
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
F N +YN + MA+TL F Q + +++Q
Sbjct: 100 NTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 47/103 (45%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 181 MRRCGEILTKLMKDKQG---WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK 237
++ C IL + K W F PVDV +L L DY DIIK P D T++SKLE+ Y+
Sbjct: 9 LKCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYR 68
Query: 238 CPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQK 280
QEF DVRL F+N YNP H V A A L FE F K
Sbjct: 69 DAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRFAK 111
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 179 NAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKC 238
N ++C E++ + + + F PVD+V DY DII PMD GTVR L+ Y
Sbjct: 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDS 67
Query: 239 PQEFAEDVRLTFNNALVYNP-KGHYVYAMAETLSAKFEQMFQKLS 282
P EF +D+RL F+NA Y P K +Y+M LSA FE+ +K+S
Sbjct: 68 PLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKIS 112
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 174 LTSTKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLEN 233
LT+ ++R +L L K W F PVD V L+L DY+ IIK PMDL T++ +LEN
Sbjct: 11 LTNQLQFLQRV--VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLEN 68
Query: 234 NVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQRQ 288
Y+ E ED F+N +YN G + MA+ L F QKLS+ Q +
Sbjct: 69 KYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLF---MQKLSQMPQEE 120
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
++ L K + W F PVD + L L DYH IIK PMD+GT++ +LENN Y E +D
Sbjct: 29 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 88
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F N +YN + MA+ L F Q
Sbjct: 89 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 118
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
++ L K + W F PVD + L L DYH IIK PMD+GT++ +LENN Y E +D
Sbjct: 27 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 86
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F N +YN + MA+ L F Q
Sbjct: 87 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 116
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
++ L K + W F PVD + L L DYH IIK PMD+GT++ +LENN Y E +D
Sbjct: 25 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDF 84
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F N +YN + MA+ L F Q
Sbjct: 85 NTMFTNCYIYNKPTDDIVLMAQALEKIFLQ 114
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD V L+L DY+ IIK PMDL T++ +LEN Y E ED
Sbjct: 21 VLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDF 80
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQRQ 288
F+N +YN G + MA+ L F QKLS+ Q +
Sbjct: 81 NTMFSNCYLYNKPGDDIVLMAQALEKLF---MQKLSQMPQEE 119
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 193 KDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252
+D + F PVD L + DY DI+K PMDL T++ KL+ Y+ P ++ +D+ L FNN
Sbjct: 31 QDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNN 90
Query: 253 ALVYNPKGHYVYAMAETLSAKFEQ 276
A +YN K VY LS FEQ
Sbjct: 91 AWLYNRKTSRVYKYCSKLSEVFEQ 114
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 193 KDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252
+D + F PVD L + DY DI+K PMDL T++ KL+ Y+ P ++ +DV L FNN
Sbjct: 26 QDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85
Query: 253 ALVYNPKGHYVYAMAETLSAKFEQ 276
A +YN K VY L+ FEQ
Sbjct: 86 AWLYNRKTSRVYKFCSKLAEVFEQ 109
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%)
Query: 193 KDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252
+D + F PVD L + DY DI+K PMDL T++ KL+ Y+ P ++ +DV L FNN
Sbjct: 28 QDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 87
Query: 253 ALVYNPKGHYVYAMAETLSAKFEQ 276
A +YN K VY L+ FEQ
Sbjct: 88 AWLYNRKTSRVYKFCSKLAEVFEQ 111
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 182 RRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQE 241
++C E+L + + + F PVD+ L DY DII PMD TVR LE Y+ P E
Sbjct: 24 KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 242 FAEDVRLTFNNALVYNP-KGHYVYAMAETLSAKFEQ 276
+DVRL F+N+ Y P K +Y+M+ LSA FE+
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEE 117
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 49/96 (51%)
Query: 191 LMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTF 250
L K + W F PVD V L L DYH IIK+P D GT++ +LENN Y E +D F
Sbjct: 18 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 77
Query: 251 NNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
N +YN + A+TL F Q +++Q
Sbjct: 78 TNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQ 113
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 49/96 (51%)
Query: 191 LMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTF 250
L K + W F PVD V L L DYH IIK+P D GT++ +LENN Y E +D F
Sbjct: 24 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 83
Query: 251 NNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
N +YN + A+TL F Q +++Q
Sbjct: 84 TNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEEQ 119
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
ILT+L W F PV+ + DY+D IK+PMDL T+ KLE+N Y+ ++F D
Sbjct: 21 ILTELQNHAAAWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDA 78
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKF 274
RL FNN +YN + Y A L F
Sbjct: 79 RLVFNNCRMYNGENTSYYKYANRLEKFF 106
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 165 KRAAAGTXSLTSTKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDL 224
K+ G LT R+C +L L + AF PV L + DY+ IIK PMDL
Sbjct: 69 KKKTEGLVKLTPIDK--RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDL 123
Query: 225 GTVRSKLENN--VYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKL 281
T++ +L+ + +Y P++F D RL F N +N V L FE++ + L
Sbjct: 124 STIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 182 RRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENN--VYKCP 239
R+C +L L + AF PV L + DY+ IIK PMDL T++ +L+ + +Y P
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 240 QEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ 286
++F D RL F N +N V L FE++ + L +++
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+PMDL T+ +++ Y+ EF D+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 79 TAIFDNCRYYNPSDSPFYQCAEVLESFFVQ 108
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+PMDL T+ +++ Y+ EF D+
Sbjct: 28 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 86 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 115
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+PMDL T+ +++ Y+ EF D+
Sbjct: 21 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 79 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 108
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+PMDL T+ +++ Y+ EF D+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+PMDL T+ +++ Y+ EF D+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 184 CGEILTKLMKDKQGWAFNTPVDVVSLRLR-DYHDIIKKPMDLGTVRSKLENNVYKCPQEF 242
C ILT++ + W F PV+ L+L Y +IKKPMD T+R KL + Y + F
Sbjct: 18 CSMILTEMETHEDAWPFLLPVN---LKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETF 74
Query: 243 AEDVRLTFNNALVYN 257
A DVRL F+N +N
Sbjct: 75 ALDVRLVFDNCETFN 89
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 184 CGEILTKLMKDKQGWAFNTPVDVVSLRL-RDYHDIIKKPMDLGTVRSKLENNVYKCPQEF 242
C ILT++ + W F PV+ L+L Y +IKKPMD T+R KL + Y + F
Sbjct: 15 CSMILTEMETHEDAWPFLLPVN---LKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETF 71
Query: 243 AEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
A DVRL F+N +N + + FE+
Sbjct: 72 ALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEK 105
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L L K W F PVD DY+ +IK+P DL T +++ Y+ EF D
Sbjct: 80 VLRSLQAHKXAWPFLEPVDPNDAP--DYYGVIKEPXDLATXEERVQRRYYEKLTEFVADX 137
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQ 276
F+N YNP Y AE L + F Q
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 186 EILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAED 245
++ +L DK+ F+ PVD+ + DY ++IK+PMDL TV +K++ + Y ++F +D
Sbjct: 19 DVTKRLATDKRFNIFSKPVDIE--EVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKD 76
Query: 246 VRLTFNNALVYNP 258
+ L +NAL YNP
Sbjct: 77 IDLICSNALEYNP 89
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 182 RRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLE---NNVYKC 238
R+C +L L + F PV + +Y+ IIKKPMDL TV+ KL+ + Y+
Sbjct: 84 RKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 140
Query: 239 PQEFAEDVRLTFNNALVYNPKGHYVYAMAET 269
P +F DVRL F N +N V A+T
Sbjct: 141 PDDFVADVRLIFKNCERFNEMMKVVQVYADT 171
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 186 EILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAED 245
+++ L K + G F VD DY+D+IK P +++KL+ Y P EF +D
Sbjct: 28 QLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKD 87
Query: 246 VRLTFNNALVYNPKGHYVYAMAETLSAKF 274
V+L F+N +YN V + + F
Sbjct: 88 VQLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+ K+M W F+ PV+ + DY+ +I PMDL T+R + + Y+ + F +DV
Sbjct: 178 VTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDV 235
Query: 247 RLTFNNALVYN-PKGHYVYAMAETLSAKFEQMFQKLSKQQQRQGILGRG--KAREMSLEE 303
L N++ YN P+ Y E ++ +Q L++ + L + A+E +LEE
Sbjct: 236 NLILANSVKYNGPESQYTKTAQEIVNV----CYQTLTEYDEHLTQLEKDICTAKEAALEE 291
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 181 MRRCGEILTKLMKDKQG----WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVY 236
M IL ++ D + + F+TPV+ + ++DY+ II +PMDL T+R + +Y
Sbjct: 45 MVTLSSILESIINDMRDLPNTYPFHTPVN--AKVVKDYYKIITRPMDLQTLRENVRKRLY 102
Query: 237 KCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
+EF E + L N+ YN H + +++++
Sbjct: 103 PSREEFREHLELIVKNSATYNGPKHSLTQISQSM 136
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 193 KDKQGWAFNTPV-DVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFN 251
KD G+ F PV D ++ Y IIK PMD GT++ K+ N YK EF D +L +
Sbjct: 28 KDPHGF-FAFPVTDAIA---PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCD 83
Query: 252 NALVYNPKGHYVYAMA-ETLSAKFEQM 277
NA+ YN Y +A + L A F+ M
Sbjct: 84 NAMTYNRPDTVYYKLAKKILHAGFKMM 110
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 19/116 (16%)
Query: 186 EILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAED 245
++ +L DK+ F+ PV DY ++IK+PMDL TV +K++ + Y ++F +D
Sbjct: 19 DVTKRLATDKRFNIFSKPVS-------DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKD 71
Query: 246 VRLTFNNALVYNPKG--------HYVYAMAET----LSAKFEQMFQKLSKQQQRQG 289
+ L +NAL YNP H + +T ++A+ + F KL ++ + G
Sbjct: 72 IDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESG 127
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 190 KLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLT 249
K+M W F+ PV+ + DY+ +I PMDL T+R + + Y+ + F +DV L
Sbjct: 160 KMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLI 217
Query: 250 FNNALVYN-PKGHYVYAMAETLSAKFEQM 277
N++ YN P+ Y E ++ ++ +
Sbjct: 218 LANSVKYNGPESQYTKTAQEIVNVCYQTL 246
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 181 MRRCGEILTKLMKDKQG----WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVY 236
M IL ++ D + + F+TPV+ + ++DY+ II +PMDL T+R + +Y
Sbjct: 24 MVTLSSILESIINDMRDLPNTYPFHTPVN--AKVVKDYYKIITRPMDLQTLRENVRKRLY 81
Query: 237 KCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQRQGILGRGKA 296
+EF E + L N+ YN H + +++++ + +KL +++ + L +
Sbjct: 82 PSREEFREHLELIVKNSATYNGPKHSLTQISQSM---LDLCDEKLKEKEDKLARLEKAIN 138
Query: 297 REMSLEEKMALGRSLEELPQEEL 319
+ ++++A L+ + +++
Sbjct: 139 PLLDDDDQVAFSFILDNIVTQKM 161
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y+++I+KP+D ++ ++ N+ Y+ + +DV L NA +N +G +Y + L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 271 SAKFEQMFQKLSKQQQRQG 289
+ F + QK+ K+ +G
Sbjct: 108 QSVFTSVRQKIEKEDDSEG 126
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 190 KLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLT 249
K+M W F+ PV+ + DY+ +I PMDL T+R + + Y+ + F +DV L
Sbjct: 148 KMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLI 205
Query: 250 FNNALVYN-PKGHYVYAMAETLSAKFEQM 277
N++ YN P+ Y E ++ ++ +
Sbjct: 206 LANSVKYNGPESQYTKTAQEIVNVCYQTL 234
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 181 MRRCGEILTKLMKDKQG----WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVY 236
M IL ++ D + + F+TPV+ + ++DY+ II +PMDL T+R + +Y
Sbjct: 12 MVTLSSILESIINDMRDLPNTYPFHTPVN--AKVVKDYYKIITRPMDLQTLRENVRKRLY 69
Query: 237 KCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
+EF E + L N+ YN H + +++++
Sbjct: 70 PSREEFREHLELIVKNSATYNGPKHSLTQISQSM 103
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLR-LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAED 245
+L +L F PV SL+ + DY D IK PMD T+R +LE YK EF ED
Sbjct: 21 VLDQLQDKDPARIFAQPV---SLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEED 77
Query: 246 VRLTFNNALVYNPKGHYVYAMAETL 270
L +N + YN + Y A L
Sbjct: 78 FDLIIDNCMKYNARDTVFYRAAVRL 102
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+ K+M W F+ PV+ + DY+ +I PMDL T+R + + Y+ + F +DV
Sbjct: 38 VTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDV 95
Query: 247 RLTFNNALVYN-PKGHYVYAMAETLSAKFEQM 277
L N++ YN P+ Y E ++ ++ +
Sbjct: 96 NLILANSVKYNGPESQYTKTAQEIVNVCYQTL 127
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 188 LTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVR 247
L +L + G F+ PV + + DY D IKKPMD T++ LE Y +F ED
Sbjct: 16 LEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFN 73
Query: 248 LTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQRQG 289
L +N L YN K Y A L + + ++ +Q ++ G
Sbjct: 74 LIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG 115
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSA 272
DY+ IIK+P+DL T+ +++N YK A+D+ L NA YN G V+ A ++
Sbjct: 47 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 106
Query: 273 KF 274
F
Sbjct: 107 IF 108
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y+++I+KP+D ++ ++ N+ Y+ + +DV L NA +N +G +Y + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 271 SAKFEQMFQKLSKQ 284
+ F + QK+ K+
Sbjct: 109 QSVFTSVRQKIEKE 122
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y+++I+KP+D ++ ++ N+ Y+ + +DV L NA +N +G +Y + L
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 271 SAKFEQMFQKLSKQ 284
+ F + QK+ K+
Sbjct: 104 QSVFTSVRQKIEKE 117
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSA 272
DY+ IIK+P+DL T+ +++N YK A+D+ L NA YN G V+ A ++
Sbjct: 46 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 105
Query: 273 KF 274
F
Sbjct: 106 IF 107
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+ K+M W F+ PV+ + DY+ +I P+DL T+R + + Y+ + F +DV
Sbjct: 35 VTQKMMAVPDSWPFHHPVN--KKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDV 92
Query: 247 RLTFNNALVYN-PKGHYVYAMAETLSAKFEQM 277
L N++ YN P+ Y E ++ ++ +
Sbjct: 93 NLILANSVKYNGPESQYTKTAQEIVNICYQTI 124
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSA 272
DY+ IIK+P+DL T+ +++N YK A+D+ L NA YN G V+ A ++
Sbjct: 44 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 103
Query: 273 KF 274
F
Sbjct: 104 IF 105
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L + K W F PVD +Y+ IIK PMD+ ++ KL +Y +EF D+
Sbjct: 24 VLDVVKAHKDSWPFLEPVD--ESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDM 81
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQK 280
+ F N YN + M++ L F + K
Sbjct: 82 KTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
DY+ II +PMDL + + N+ Y + ED++L F NA YN +G VY A L
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL 120
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
IL ++ + W F PV Y+++I+ PMDL T+ +L+N Y + F D+
Sbjct: 23 ILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 80
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKF 274
+ F N YNP Y A L F
Sbjct: 81 QRVFTNCKEYNPPESEYYKCANILEKFF 108
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
IL ++ + W F PV Y+++I+ PMDL T+ +L+N Y + F D+
Sbjct: 21 ILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADL 78
Query: 247 RLTFNNALVYNPKGHYVYAMAETLSAKF 274
+ F N YNP Y A L F
Sbjct: 79 QRVFTNCKEYNPPESEYYKCANILEKFF 106
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y++I+ PM L V+ LE Y +F D+ L F NA ++N +Y A TL
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 271 SAKFEQMFQK 280
+ F + QK
Sbjct: 303 TNYFNYLIQK 312
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y++I+ PM L V+ LE Y +F D+ L F NA ++N +Y A TL
Sbjct: 228 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 271 SAKFEQMFQK 280
+ F + QK
Sbjct: 288 TNYFNYLIQK 297
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 190 KLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLT 249
+L DK+ F PVD + DY +IK+PMDL +V SK++ + Y +++ D+ L
Sbjct: 21 RLAIDKRFRVFTKPVD--PDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLI 78
Query: 250 FNNALVYNP 258
+NAL YNP
Sbjct: 79 CSNALEYNP 87
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 186 EILTKLMKDKQ----GWAFNTPV-DVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQ 240
E L +LM+ Q F+ PV D ++ Y IIK PMD T++ K++NN Y+ +
Sbjct: 11 EALNQLMRQLQRKDPSAFFSFPVTDFIA---PGYSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 241 EFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
E ++ +L NA++YN Y A+ L
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L DY+ IKKPMD+ +RS + N Y+ ED + FNNA YN +Y A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L DY+ IKKPMD+ +RS + N Y+ ED + FNNA YN +Y A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 295 KAREMSLEEKMALGRSLEELPQEELGKLLGIVKKRNSGNGSLSCHGDEIELDIEALDNDT 354
K + MS EEK L + +LP E+LG+++ I++ R + + DEIE+D E L T
Sbjct: 14 KCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLK--NSNPDEIEIDFETLKPST 71
Query: 355 LSQLVRFV 362
L +L R+V
Sbjct: 72 LRELERYV 79
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y+++I+KP+D ++ ++ N+ Y+ + +DV L +NA +N +G +Y + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 271 SAKFE 275
+ F+
Sbjct: 109 QSVFK 113
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y++I+ P L V+ LE Y +F D L F NA ++N +Y A TL
Sbjct: 193 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 271 SAKFEQMFQK 280
+ F + QK
Sbjct: 253 TNYFNYLIQK 262
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 211 LRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETL 270
L +Y++I+ P L V+ LE Y +F D L F NA ++N +Y A TL
Sbjct: 187 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 271 SAKFEQMFQK 280
+ F + QK
Sbjct: 247 TNYFNYLIQK 256
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L ++ W F PV DY+++I+ P+DL T+ +L + Y + F D+
Sbjct: 15 LLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADL 72
Query: 247 RLTFNNALVYNP 258
+ N YNP
Sbjct: 73 QRVIANCREYNP 84
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDV 246
+L ++ W F PV DY+++I+ P+DL T+ +L + Y + F D+
Sbjct: 11 LLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADL 68
Query: 247 RLTFNNALVYNP 258
+ N YNP
Sbjct: 69 QRVIANCREYNP 80
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVY 264
DY+ IK P+ L +R+KL+N Y+ D+ L F NA YN +Y
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIY 106
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVY 256
DY++++ +P+DL ++ KL+ Y D +L FNNA Y
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 213 DYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253
DY++ I P+DL T+ ++ YK + F D+ F NA
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 187 ILTKLMKDKQG-------WAFNTPV-------DVVSLRLRDYHDIIKK-----PMDLGTV 227
I+T D QG + + PV D++ L DY D+ K P + G V
Sbjct: 242 IVTHAHLDHQGLVPLLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMV 301
Query: 228 RSKLENNV---YKCPQEFAEDVRLTFNNA 253
L++ + Y+ + A D++LTF+NA
Sbjct: 302 AKTLKHTIPLDYEEVTDIAPDIKLTFHNA 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,918,268
Number of Sequences: 62578
Number of extensions: 445913
Number of successful extensions: 800
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 91
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)