Query 038229
Match_columns 467
No_of_seqs 393 out of 1418
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 1.4E-40 3E-45 364.7 16.3 277 94-374 105-534 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 8.7E-28 1.9E-32 211.7 12.2 105 178-284 4-109 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1E-27 2.2E-32 208.0 11.9 104 178-281 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.8E-27 3.9E-32 206.1 11.2 101 180-280 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 2.2E-27 4.8E-32 202.2 10.1 95 181-277 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 7.4E-27 1.6E-31 198.8 10.0 96 181-278 2-97 (97)
7 cd05504 Bromo_Acf1_like Bromod 99.9 1.4E-26 3.1E-31 203.0 12.0 105 176-282 9-113 (115)
8 cd05506 Bromo_plant1 Bromodoma 99.9 7.8E-27 1.7E-31 198.9 9.9 98 181-278 2-99 (99)
9 cd05507 Bromo_brd8_like Bromod 99.9 2.9E-26 6.3E-31 197.6 11.1 101 178-280 2-102 (104)
10 cd05498 Bromo_Brdt_II_like Bro 99.9 2.3E-26 5E-31 197.1 9.8 98 181-278 2-102 (102)
11 cd05500 Bromo_BDF1_2_I Bromodo 99.9 4.6E-26 1E-30 195.9 11.0 100 178-277 3-102 (103)
12 cd05510 Bromo_SPT7_like Bromod 99.9 6.1E-26 1.3E-30 198.1 11.2 105 176-282 4-110 (112)
13 cd05501 Bromo_SP100C_like Brom 99.9 8.6E-26 1.9E-30 193.6 11.8 97 180-281 3-99 (102)
14 cd05499 Bromo_BDF1_2_II Bromod 99.9 4.7E-26 1E-30 195.3 10.1 98 181-278 2-102 (102)
15 cd05502 Bromo_tif1_like Bromod 99.9 1.1E-25 2.4E-30 195.4 11.9 101 178-281 3-106 (109)
16 cd05509 Bromo_gcn5_like Bromod 99.9 1.1E-25 2.4E-30 192.5 10.8 100 180-281 2-101 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 1.6E-25 3.5E-30 191.4 10.5 96 179-277 3-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.7E-25 1E-29 191.0 9.7 99 180-280 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 6.1E-25 1.3E-29 187.5 9.8 93 180-274 2-94 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 1.4E-24 2.9E-29 189.6 11.1 101 179-281 3-107 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 1.6E-24 3.4E-29 184.9 10.0 93 180-274 2-94 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 2.1E-24 4.5E-29 188.4 11.0 100 183-284 4-103 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 6.6E-24 1.4E-28 182.5 9.3 96 181-278 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 6.9E-24 1.5E-28 183.1 9.4 97 181-279 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 1.3E-23 2.7E-28 183.8 10.2 102 180-283 3-110 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 4.7E-23 1E-27 183.9 11.6 103 176-279 21-126 (128)
27 smart00297 BROMO bromo domain. 99.9 5.5E-23 1.2E-27 176.2 11.1 102 177-280 5-106 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 3.7E-23 7.9E-28 178.1 9.3 90 186-277 7-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 4.7E-23 1E-27 177.4 9.3 94 181-276 2-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 7.2E-23 1.6E-27 177.1 10.3 96 180-277 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 6.5E-23 1.4E-27 176.5 9.1 94 182-277 3-102 (103)
32 PF00439 Bromodomain: Bromodom 99.9 7.2E-22 1.6E-26 162.1 8.9 84 184-269 1-84 (84)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.2E-21 2.7E-26 168.8 10.4 97 179-277 4-103 (104)
34 cd04369 Bromodomain Bromodomai 99.9 9.7E-22 2.1E-26 163.5 9.2 96 181-278 2-99 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2.3E-21 4.9E-26 167.8 9.7 95 180-278 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 1E-20 2.2E-25 164.3 11.0 97 186-282 7-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 8.5E-18 1.8E-22 146.0 10.1 99 180-282 4-108 (110)
38 KOG1245 Chromatin remodeling c 99.7 1.1E-17 2.5E-22 195.3 7.6 95 184-281 1306-1400(1404)
39 COG5076 Transcription factor i 99.7 7E-17 1.5E-21 167.7 10.0 88 195-284 164-251 (371)
40 KOG1472 Histone acetyltransfer 99.4 1.2E-13 2.6E-18 151.3 5.6 100 180-281 607-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.7E-13 3.6E-18 120.3 4.3 81 179-259 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.3 1.1E-11 2.4E-16 141.1 8.9 150 109-284 519-668 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.0 2.5E-10 5.4E-15 100.1 4.1 42 219-260 62-103 (119)
44 KOG0008 Transcription initiati 98.9 1.1E-09 2.4E-14 125.0 5.7 97 182-280 1385-1481(1563)
45 KOG0386 Chromatin remodeling c 98.8 4.4E-09 9.5E-14 117.9 7.0 101 182-284 1027-1133(1157)
46 KOG1827 Chromatin remodeling c 98.8 1.1E-08 2.5E-13 111.1 7.5 98 180-279 53-156 (629)
47 KOG0008 Transcription initiati 98.7 3.7E-08 8.1E-13 112.8 8.1 97 182-280 1264-1360(1563)
48 KOG1474 Transcription initiati 98.6 1.1E-08 2.5E-13 113.4 1.7 90 190-279 3-92 (640)
49 KOG1472 Histone acetyltransfer 98.6 6.8E-08 1.5E-12 106.7 6.4 76 178-262 292-367 (720)
50 KOG1828 IRF-2-binding protein 98.2 3.2E-07 6.8E-12 94.2 0.1 93 185-279 25-117 (418)
51 KOG1828 IRF-2-binding protein 98.1 2E-06 4.3E-11 88.5 3.1 83 187-272 216-298 (418)
52 COG5076 Transcription factor i 96.8 0.00032 6.9E-09 73.4 0.2 91 188-280 272-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.7 0.017 3.8E-07 52.0 5.0 59 221-279 59-117 (131)
54 PF05110 AF-4: AF-4 proto-onco 92.0 0.15 3.3E-06 60.6 4.3 29 429-457 436-465 (1191)
55 KOG0644 Uncharacterized conser 90.2 0.16 3.4E-06 57.6 2.0 61 218-278 1050-1110(1113)
56 KOG0732 AAA+-type ATPase conta 86.8 0.32 7E-06 57.0 1.7 64 197-260 533-601 (1080)
57 PHA03308 transcriptional regul 86.2 0.47 1E-05 53.1 2.5 16 349-364 1192-1207(1463)
58 PF05110 AF-4: AF-4 proto-onco 85.3 0.68 1.5E-05 55.3 3.4 21 440-460 439-459 (1191)
59 KOG3116 Predicted C3H1-type Zn 82.6 0.89 1.9E-05 41.8 2.2 20 437-456 138-157 (177)
60 KOG2130 Phosphatidylserine-spe 78.6 1.8 3.9E-05 44.6 3.1 20 234-253 156-175 (407)
61 KOG2140 Uncharacterized conser 66.0 4 8.6E-05 44.8 2.3 6 459-464 700-705 (739)
62 KOG0644 Uncharacterized conser 64.9 1.9 4.2E-05 49.3 -0.3 70 200-272 86-185 (1113)
63 KOG1827 Chromatin remodeling c 60.4 1.3 2.8E-05 49.4 -2.6 74 198-273 214-287 (629)
64 KOG1869 Splicing coactivator S 43.4 29 0.00062 36.9 4.0 18 409-426 371-388 (425)
65 PF14372 DUF4413: Domain of un 43.0 77 0.0017 27.0 6.1 49 234-282 4-52 (101)
66 PF07218 RAP1: Rhoptry-associa 40.4 74 0.0016 35.5 6.7 29 343-371 38-66 (782)
67 TIGR02606 antidote_CC2985 puta 36.9 45 0.00097 26.7 3.4 27 225-251 12-38 (69)
68 KOG2236 Uncharacterized conser 34.9 38 0.00082 36.8 3.4 6 403-408 90-95 (483)
69 COG5129 MAK16 Nuclear protein 29.0 33 0.00071 33.9 1.7 20 260-279 101-120 (303)
70 PF11116 DUF2624: Protein of u 27.4 75 0.0016 26.8 3.3 67 297-366 13-83 (85)
71 PF10872 DUF2740: Protein of u 25.8 57 0.0012 23.7 2.0 15 116-130 30-44 (48)
72 PRK00083 frr ribosome recyclin 25.6 1.6E+02 0.0036 28.1 5.8 41 94-134 94-134 (185)
73 PF01765 RRF: Ribosome recycli 23.7 1.5E+02 0.0033 27.5 5.0 41 94-134 76-116 (165)
74 PF04472 DUF552: Protein of un 23.1 2E+02 0.0042 22.9 5.0 41 317-368 10-50 (73)
75 TIGR00496 frr ribosome recycli 23.1 2E+02 0.0043 27.2 5.8 41 94-134 85-125 (176)
76 cd00520 RRF Ribosome recycling 22.0 2.2E+02 0.0047 27.0 5.8 41 94-134 90-130 (179)
77 PF03693 RHH_2: Uncharacterise 21.4 1.1E+02 0.0023 25.3 3.2 26 225-250 15-40 (80)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=1.4e-40 Score=364.75 Aligned_cols=277 Identities=34% Similarity=0.565 Sum_probs=211.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhc-ccccccCC---CCCCC----C---------ccC-CCCCCC
Q 038229 94 ESDYVTFNLGAYTRRELKDLRKRLVSDLERVRNLGSRIA-NSDFQATH---AYPTT----K---------SQN-RGGSKR 155 (467)
Q Consensus 94 ~~~~~~f~~s~~s~~er~~Lr~Rl~~eLe~VR~l~~ki~-~~~~~~~~---~~~~~----~---------~~~-~~~~k~ 155 (467)
....+.+.+.++++.+++++..||+.+|++||.+.++++ ........ +..+. . .++ .....+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 184 (640)
T KOG1474|consen 105 GPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSER 184 (640)
T ss_pred ccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcC
Confidence 555667899999999999999999999999999999997 11111111 11110 0 000 000001
Q ss_pred CCCCCCCccccccCC---------------CCCCcchHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCC
Q 038229 156 ANPFGNPKAKRAAAG---------------TXSLTSTKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKK 220 (467)
Q Consensus 156 ~~p~~~~~~kr~~~~---------------~~~~~~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~ 220 (467)
..+.+. +......+ ......+..++++|..||.+||+|+++|+|+.|||++.||+||||+||+|
T Consensus 185 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~ 263 (640)
T KOG1474|consen 185 EPSPGQ-KREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKH 263 (640)
T ss_pred CCCccc-cccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCC
Confidence 111000 00000000 00112567899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh--------------
Q 038229 221 PMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQQQ-------------- 286 (467)
Q Consensus 221 PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~~~-------------- 286 (467)
||||+||++||.+|.|.++.||++||||||.|||+||++|++||.||..|+++|+.+|..+.....
T Consensus 264 PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~ 343 (640)
T KOG1474|consen 264 PMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS 343 (640)
T ss_pred CccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999997432200
Q ss_pred ------------h-------hc----c--------------------------------------------------cC-
Q 038229 287 ------------R-------QG----I--------------------------------------------------LG- 292 (467)
Q Consensus 287 ------------r-------~~----~--------------------------------------------------~~- 292 (467)
+ .+ . .+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~ 423 (640)
T KOG1474|consen 344 SDQIPSNSVEGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPL 423 (640)
T ss_pred ccccccccccCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCcccccccccccccccc
Confidence 0 00 0 00
Q ss_pred --------C--------cccccccHHHHHHHHHHhcc-CCHHHHHHHHHHH--HhhcCCCCCCCCCCCeeEEecccCC--
Q 038229 293 --------R--------GKAREMSLEEKMALGRSLEE-LPQEELGKLLGIV--KKRNSGNGSLSCHGDEIELDIEALD-- 351 (467)
Q Consensus 293 --------k--------~k~r~mt~eEk~~L~~~i~~-L~~e~l~~Vi~II--~~~~~~~p~~~~~~deIEIDId~L~-- 351 (467)
+ ..++.||..++..|...+.. +++..+..+++|+ ..+. +.+.+.+++|++|++.++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~vd~~ 500 (640)
T KOG1474|consen 424 VTGKLIKEKNKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQ---LDLSQNDDEIELDLDSVDGS 500 (640)
T ss_pred chhhhhhhhhccccccccccccccccccccchhhccCCCCCccccCcccccchhhhc---ccccccccchhhcccccccc
Confidence 0 11678999999999999999 4899999999999 4466 777888999999999999
Q ss_pred -----------HHHHHHHHHHHHHHHHHhhhccc
Q 038229 352 -----------NDTLSQLVRFVDNFKKAEKDKTE 374 (467)
Q Consensus 352 -----------~~TL~eL~~yV~~~~k~~~k~kr 374 (467)
.+|+|++.+++..+..+..+...
T Consensus 501 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~ 534 (640)
T KOG1474|consen 501 QSREPSSNPLEIETIRETLKLSTERELELSKASS 534 (640)
T ss_pred cccCCCcccchhhhhhccccchhhHHHHHHHHhh
Confidence 99999999999999877766544
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=8.7e-28 Score=211.74 Aligned_cols=105 Identities=38% Similarity=0.660 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..|.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 258 PK-GHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 258 ~~-~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
++ ++.||.+|..|++.|+++++++...
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 9999999999999999999988643
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=207.99 Aligned_cols=104 Identities=38% Similarity=0.602 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhc
Q 038229 178 KNAMRRCGEILTKLMKD-KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVY 256 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~-~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~Y 256 (467)
+++.++|..||++|+++ +.+|+|..||++...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999 99999999999987789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 257 NPKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 257 N~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
|+++|.++.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998865
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.8e-27 Score=206.13 Aligned_cols=101 Identities=43% Similarity=0.686 Sum_probs=95.2
Q ss_pred HHHHH-HHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 180 AMRRC-GEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 180 ~~k~c-~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
.++.| ..||..|++++.+++|.+|||+...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34444 68899999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 038229 259 KGHYVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 259 ~~S~v~~~A~~L~~~Fe~~~~~ 280 (467)
+++.++.+|..|++.|++.++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.2e-27 Score=202.18 Aligned_cols=95 Identities=34% Similarity=0.640 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 038229 181 MRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKG 260 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~ 260 (467)
+++|.+||++|++++.+++|..||++.. +||||++|++||||+||++||+.|.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 038229 261 HYVYAMAETLSAKFEQM 277 (467)
Q Consensus 261 S~v~~~A~~L~~~Fe~~ 277 (467)
+.|+..|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.4e-27 Score=198.77 Aligned_cols=96 Identities=38% Similarity=0.653 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 038229 181 MRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKG 260 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~ 260 (467)
+.+|..||..|++++.+++|..||++.. +|+|+++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 6789999999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 038229 261 HYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 261 S~v~~~A~~L~~~Fe~~~ 278 (467)
+.++.+|..|++.|++.|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=202.96 Aligned_cols=105 Identities=37% Similarity=0.663 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
.+...+..|..||..|++++.+++|..||+... +||||++|++||||+||++||+.|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 446689999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||++++.++.+|..|++.|++.++++.
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998763
No 8
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.8e-27 Score=198.88 Aligned_cols=98 Identities=61% Similarity=1.008 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 038229 181 MRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKG 260 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~ 260 (467)
+++|..||+.|++++.+++|..||++...++|+||++|++||||+||++||++|.|.++.+|..||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68999999999999999999999998876799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 038229 261 HYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 261 S~v~~~A~~L~~~Fe~~~ 278 (467)
|.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999986
No 9
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.9e-26 Score=197.60 Aligned_cols=101 Identities=29% Similarity=0.467 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..|.+.|..|++.|++|+.+++|.+||+... +|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3589999999999999999999999999865 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~ 280 (467)
++++.++.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887753
No 10
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.3e-26 Score=197.11 Aligned_cols=98 Identities=49% Similarity=0.815 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 181 MRRCGEILTKLMKD---KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 181 ~k~c~~IL~~L~~~---~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
+++|.+||..|+++ +.+++|..||++...++||||++|++||||+||++||..|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 789999999999877799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~ 278 (467)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 11
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.6e-26 Score=195.86 Aligned_cols=100 Identities=39% Similarity=0.574 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..+.++|.+||..|++++.+++|..||++...++||||++|++||||+||++||..|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46889999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~ 277 (467)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.1e-26 Score=198.10 Aligned_cols=105 Identities=32% Similarity=0.476 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHcC-CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKD-KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~-~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
+..++...|..||..|+++ +.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 4 ~~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~ 81 (112)
T cd05510 4 GQEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCL 81 (112)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 5577999999999999999 89999999999986 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGH-YVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 255 ~YN~~~S-~v~~~A~~L~~~Fe~~~~~ie 282 (467)
.||++++ .++.+|..|++.|+.++..|.
T Consensus 82 ~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 82 LYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999865 688999999999999998764
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.6e-26 Score=193.62 Aligned_cols=97 Identities=29% Similarity=0.450 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
.+++|+.||.+|++++.+++|..++ . ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 5678999999999999999996632 3 39999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
+ .++.+|..|++.|+++|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999865
No 14
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=195.35 Aligned_cols=98 Identities=45% Similarity=0.840 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcC---CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 181 MRRCGEILTKLMKD---KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 181 ~k~c~~IL~~L~~~---~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
++.|.+||..|+++ +.+++|..||++....+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57999999999995 569999999999866699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~ 278 (467)
++++.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 15
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=195.43 Aligned_cols=101 Identities=34% Similarity=0.588 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhC---CCCCCHHHHHHHHHHhhhhhh
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLEN---NVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~---~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
...+++|.+||.+|++++.+++|.+||++ . +|+||++|++||||+||++||+. |.|.++++|.+||+|||.||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998 4 99999999999999999999998 699999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
.||++++.++.+|..|++.|+++++.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.1e-25 Score=192.51 Aligned_cols=100 Identities=37% Similarity=0.596 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
++.+|..||+.|++|+.+++|.+||++.. +|+|+++|++||||+||++||..|.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56899999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
++.++.+|..|++.|+++++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998763
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.6e-25 Score=191.36 Aligned_cols=96 Identities=25% Similarity=0.402 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 179 NAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
++...+..++..|+ |+.+|+|.+||++.. +||||.+|++||||+||++||++|.|.++++|.+||+|||.||++||+
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~ 79 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNG 79 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45566778888888 999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 038229 259 KGHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 259 ~~S~v~~~A~~L~~~Fe~~ 277 (467)
++|.++.+|..|.+.|+..
T Consensus 80 ~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 80 GDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999988753
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.7e-25 Score=191.02 Aligned_cols=99 Identities=24% Similarity=0.444 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
+.++|..||+.|+++.+ +++|.+||+... +||||++|++||||+||++||..|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 56889999999999887 899999999876 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~ 280 (467)
+.||++|+.+|.+|..|++.|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999875
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.1e-25 Score=187.48 Aligned_cols=93 Identities=29% Similarity=0.453 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
+.+.|..||+.|++++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKF 274 (467)
Q Consensus 260 ~S~v~~~A~~L~~~F 274 (467)
++.+|++|..|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997654
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=1.4e-24 Score=189.65 Aligned_cols=101 Identities=34% Similarity=0.510 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 179 NAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
++...|..|+.+|++++.+++|.+||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 467788999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 038229 259 K----GHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 259 ~----~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
+ |+.++.+|..|++.|.+++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999998864
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=184.94 Aligned_cols=93 Identities=34% Similarity=0.517 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
+...|+.+|++|+.++.+++|.+||+... +|||+++|++||||+||++||.+|.|.++++|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34567899999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKF 274 (467)
Q Consensus 260 ~S~v~~~A~~L~~~F 274 (467)
++.+|++|..|++.-
T Consensus 80 ~s~~~~~A~~l~~~~ 94 (98)
T cd05512 80 DTIFYRAAVRLRDQG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998753
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.1e-24 Score=188.44 Aligned_cols=100 Identities=31% Similarity=0.551 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCH
Q 038229 183 RCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHY 262 (467)
Q Consensus 183 ~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~ 262 (467)
.+..|+.+|++++.+++|..||++.. +|+||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||++++.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35689999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 038229 263 VYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 263 v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
++.+|..|.+.|+.++..++..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999998754
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.6e-24 Score=182.50 Aligned_cols=96 Identities=29% Similarity=0.445 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCC------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhh
Q 038229 181 MRRCGEILTKLMKDK------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
.+.|.+|++.|+.++ .+++|.+||+... +||||++|++||||+||++||+.|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999554 4899999999877 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~~~ 278 (467)
.||++++.++.+|..|++.|++++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=6.9e-24 Score=183.12 Aligned_cols=97 Identities=28% Similarity=0.397 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCC------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhh
Q 038229 181 MRRCGEILTKLMKDK------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
+++|..|++.|+.+. .+++|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 567888888888764 4799999999887 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~~~~ 279 (467)
+||+++|.+|.+|..|++.|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988754
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.3e-23 Score=183.84 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
..+.|.+|+..|++++. +.+|.++|+... +||||++|++||||+||++||..+.|.++.+|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999997544 578999988766 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
+.||++++.+|.+|..|++.|++.++++..
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988753
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.7e-23 Score=183.95 Aligned_cols=103 Identities=30% Similarity=0.406 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHHHH---cCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 176 STKNAMRRCGEILTKLM---KDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~---~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
....+...|..+|.+|+ .++.+++|..||+... .+|+||++|++||||+||++||.+|.|.++++|..||+|||.|
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~N 99 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSN 99 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 44678899999999999 8999999999999882 3999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~ 279 (467)
|++||++++.++.+|..|++.|..++.
T Consensus 100 a~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 100 AETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998875
No 27
>smart00297 BROMO bromo domain.
Probab=99.89 E-value=5.5e-23 Score=176.17 Aligned_cols=102 Identities=41% Similarity=0.616 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhc
Q 038229 177 TKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVY 256 (467)
Q Consensus 177 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~Y 256 (467)
...+...|..|+..+.+++.+++|..||+... +|+||++|++||||++|++||++|.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 038229 257 NPKGHYVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 257 N~~~S~v~~~A~~L~~~Fe~~~~~ 280 (467)
|++++.++.+|..|.+.|++.|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.7e-23 Score=178.09 Aligned_cols=90 Identities=27% Similarity=0.402 Sum_probs=81.9
Q ss_pred HHHHHHHcCC------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 186 EILTKLMKDK------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 186 ~IL~~L~~~~------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
.|++.|+.++ .+++|.+||+... +||||++|++||||+||++||+.|.|.++.+|..||+|||.||++||++
T Consensus 7 ~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 7 QLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455555443 5899999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~ 277 (467)
++.+|.+|..|++.|++.
T Consensus 85 ~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 NSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999864
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4.7e-23 Score=177.40 Aligned_cols=94 Identities=26% Similarity=0.432 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhh
Q 038229 181 MRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 181 ~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
.+.|.+|++.|+.+.+ +++|.++++... +||||++|++||||+||++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3678889999987655 699999999887 99999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQ 276 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~ 276 (467)
.||++++.++.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.2e-23 Score=177.12 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
+.+.|..|+..|..++. +++|.++|+... +||||++|++||||+||++||..|.|.++++|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788888887654 699999999877 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~ 277 (467)
+.||+++|.++.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.5e-23 Score=176.53 Aligned_cols=94 Identities=27% Similarity=0.417 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcC------CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 182 RRCGEILTKLMKD------KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 182 k~c~~IL~~L~~~------~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
++|..|+..|... +.+.+|..+|+... +||||++|++||||+||++||..|.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455666666654 45889999999887 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~ 277 (467)
||+++|.||.+|..|++.|++.
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 32
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.86 E-value=7.2e-22 Score=162.11 Aligned_cols=84 Identities=51% Similarity=0.782 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHH
Q 038229 184 CGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYV 263 (467)
Q Consensus 184 c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v 263 (467)
|..||+.|++++.+++|..||+... +|+|+++|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8999999999999999999998776 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 038229 264 YAMAET 269 (467)
Q Consensus 264 ~~~A~~ 269 (467)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.2e-21 Score=168.82 Aligned_cols=97 Identities=23% Similarity=0.308 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHc---CCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 179 NAMRRCGEILTKLMK---DKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~---~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
..++.+...|.++.. ++.+++|.++|+... +||||++|++||||+||++||..|.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344544445555544 456999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQM 277 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~ 277 (467)
||++++.++.+|..|++.|+++
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.86 E-value=9.7e-22 Score=163.53 Aligned_cols=96 Identities=40% Similarity=0.609 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 181 MRRCGEILTKLMKD--KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 181 ~k~c~~IL~~L~~~--~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
...|..|+..|+.+ +.+++|..||++.. +|+|+.+|++||||++|++||..|.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 99999999999866 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 038229 259 KGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 259 ~~S~v~~~A~~L~~~Fe~~~ 278 (467)
.++.++.+|..|...|++.+
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998763
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.3e-21 Score=167.77 Aligned_cols=95 Identities=28% Similarity=0.387 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
+.++|..|++.|+..+. +.+|..+++... +||||++|++||||+||++||.. |.++.+|..||+|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 45778889998887765 568998888776 99999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~ 278 (467)
+.||++++.+|.+|..|++.|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998875
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1e-20 Score=164.33 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=87.0
Q ss_pred HHHHHHHc-CCCCccccCCCcc---ccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 038229 186 EILTKLMK-DKQGWAFNTPVDV---VSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGH 261 (467)
Q Consensus 186 ~IL~~L~~-~~~a~~F~~PVd~---~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S 261 (467)
-++.++.. .+...+|..||.. ...++|+|+++|++||||+||++||.+|.|++++||.+||+|||+||+.||++++
T Consensus 7 f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 7 FIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45666666 5778999999973 3345999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038229 262 YVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 262 ~v~~~A~~L~~~Fe~~~~~ie 282 (467)
.++.+|..|.+....-+.+|.
T Consensus 87 ~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 87 EQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888887764
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=8.5e-18 Score=145.98 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
+.+.+..|+..++.|.+ +.+|.+.+. . .|+||.+|+.||||.+|+.||.+|.|.++++|..||.|||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 45667789999998874 788988877 2 5788999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
++||.+||.+|.+|..|+++|.....++.
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888764
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.1e-17 Score=195.28 Aligned_cols=95 Identities=40% Similarity=0.716 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHH
Q 038229 184 CGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYV 263 (467)
Q Consensus 184 c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v 263 (467)
|..||..|+.|+.+|||++||++.. +||||+||++||||.||+.||..|.|.++++|..||+|||.||.+||.. +.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038229 264 YAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 264 ~~~A~~L~~~Fe~~~~~i 281 (467)
++++..|.++|+..|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999987753
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.68 E-value=7e-17 Score=167.75 Aligned_cols=88 Identities=33% Similarity=0.483 Sum_probs=83.3
Q ss_pred CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 038229 195 KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKF 274 (467)
Q Consensus 195 ~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~F 274 (467)
...++|..+|+... +|+||.||+.||||++|++||..+.|.++++|..|+.|||.||.+||++++.+|.+|..|++.|
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 34889999999887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 038229 275 EQMFQKLSKQ 284 (467)
Q Consensus 275 e~~~~~ie~~ 284 (467)
..+++.++..
T Consensus 242 ~~~i~~~~~~ 251 (371)
T COG5076 242 LKLIEEIPEE 251 (371)
T ss_pred HHHHHhcccc
Confidence 9999987644
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.42 E-value=1.2e-13 Score=151.26 Aligned_cols=100 Identities=32% Similarity=0.520 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
.......||..|..|..+|||.+||+... +||||.+|++||||.||+.+|..+.|.....|++|+..||.||+.||+.
T Consensus 607 ~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~ 684 (720)
T KOG1472|consen 607 LFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGS 684 (720)
T ss_pred hhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCc
Confidence 45667799999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
++..|+.|..|...|...+...
T Consensus 685 ~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 685 DTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred cchheecccchhhhhcchhhhh
Confidence 9999999999999998887754
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.40 E-value=1.7e-13 Score=120.26 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCC-------CCCCHHHHHHHHHHhhh
Q 038229 179 NAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENN-------VYKCPQEFAEDVRLTFN 251 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~-------~Y~s~~eF~~DVrLIf~ 251 (467)
+.+..|..+|..++.++.+|||..||++...++||||++||+||||+||+++|..+ .|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 46788899999999999999999999997777999999999999999999999997 45555566677777777
Q ss_pred hhhhcCCC
Q 038229 252 NALVYNPK 259 (467)
Q Consensus 252 NA~~YN~~ 259 (467)
||..+|..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777653
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.25 E-value=1.1e-11 Score=141.10 Aligned_cols=150 Identities=30% Similarity=0.321 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCCCccCCCCCCCCCCCCCCccccccCCCCCCcchHHHHHHHHHHH
Q 038229 109 ELKDLRKRLVSDLERVRNLGSRIANSDFQATHAYPTTKSQNRGGSKRANPFGNPKAKRAAAGTXSLTSTKNAMRRCGEIL 188 (467)
Q Consensus 109 er~~Lr~Rl~~eLe~VR~l~~ki~~~~~~~~~~~~~~~~~~~~~~k~~~p~~~~~~kr~~~~~~~~~~~~~~~k~c~~IL 188 (467)
+-....++|+..|++.|.+.+.++.++..--. -.+..+.. . ...+....+.++.+|
T Consensus 519 d~~k~~~~L~~~~~s~~~l~e~~r~r~~lk~~--------~~~~~~~~----------~------~~~l~p~~kLl~~~l 574 (1051)
T KOG0955|consen 519 DSLKYWQALRLDLESAQLLVELTRKREKLKRI--------LVKSQKEA----------L------ELGLNPFKKLLQKSL 574 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--------Hhchhhhh----------h------cccCchHHHHHHHHH
Confidence 34457789999999999999988776554000 00000000 0 002334677788999
Q ss_pred HHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHH
Q 038229 189 TKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAE 268 (467)
Q Consensus 189 ~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~ 268 (467)
..|.+.+-..+|..|||..+ +|||.++|++||||.||+.++..+.|.++++|.+|+.||..||+.||..++.+|..|.
T Consensus 575 ~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av 652 (1051)
T KOG0955|consen 575 DKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAV 652 (1051)
T ss_pred HHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhH
Confidence 99999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 038229 269 TLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 269 ~L~~~Fe~~~~~ie~~ 284 (467)
.+++.....+.....+
T Consensus 653 ~~~e~~~~~~~~arke 668 (1051)
T KOG0955|consen 653 RLRELIKKDFRNARKE 668 (1051)
T ss_pred HHHhhhhhHHHhcccc
Confidence 9999988888865443
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.00 E-value=2.5e-10 Score=100.13 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCC
Q 038229 219 KKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKG 260 (467)
Q Consensus 219 k~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~ 260 (467)
-.||||+||++||.+|.|.++.+|++||+|||.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 469999999999999999999999999999999999999874
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.91 E-value=1.1e-09 Score=125.01 Aligned_cols=97 Identities=25% Similarity=0.394 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 038229 182 RRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGH 261 (467)
Q Consensus 182 k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S 261 (467)
-....|+.+++..+.+|+|.+||+.+. +|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+..+
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~ 1462 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAES 1462 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccc
Confidence 556678888888999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038229 262 YVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 262 ~v~~~A~~L~~~Fe~~~~~ 280 (467)
.+..-|+++-.+....+.+
T Consensus 1463 ~y~~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1463 AYTKKARKIGEVGLANLLE 1481 (1563)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 8888888776665555443
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.83 E-value=4.4e-09 Score=117.86 Aligned_cols=101 Identities=32% Similarity=0.472 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 182 RRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 182 k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
+.|..|+....++.. +..|...+.... +||||+||+.||++..|+++|..+.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 678899988886554 678999888887 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
||..||.||..|..|+.+|......+...
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~~ 1133 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISKE 1133 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhcc
Confidence 99999999999999999999999988643
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.77 E-value=1.1e-08 Score=111.13 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA 253 (467)
...++..||..+..+.+ ...|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..|+.||+.||
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena 130 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENA 130 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45566677777776654 667889888887 9999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~~ 279 (467)
+.||.+++.+++++..|...|..+..
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999999998664
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.67 E-value=3.7e-08 Score=112.82 Aligned_cols=97 Identities=21% Similarity=0.365 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCC
Q 038229 182 RRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGH 261 (467)
Q Consensus 182 k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S 261 (467)
-.+..|++++...++..+|..||+... ++|||.||+.||||.|+++.+....|.+-++|..|+.||++|..+||++.+
T Consensus 1264 s~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1264 SILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 344589999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038229 262 YVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 262 ~v~~~A~~L~~~Fe~~~~~ 280 (467)
.+...+..+...+-..|..
T Consensus 1342 ~~t~~~q~mls~~~~~~~e 1360 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLKE 1360 (1563)
T ss_pred HHHHHHHHHHHHHHHhhch
Confidence 9999998877776666653
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.61 E-value=1.1e-08 Score=113.39 Aligned_cols=90 Identities=37% Similarity=0.664 Sum_probs=84.0
Q ss_pred HHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHH
Q 038229 190 KLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAET 269 (467)
Q Consensus 190 ~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~ 269 (467)
.+.+|.++|+|..||+.+.+++|+||.+|++|||++||++++.++.|.+..+..+|+..+|.||..||..+..|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 038229 270 LSAKFEQMFQ 279 (467)
Q Consensus 270 L~~~Fe~~~~ 279 (467)
+...|.....
T Consensus 83 ~~~~~~~~~~ 92 (640)
T KOG1474|consen 83 LEKLFPKKLR 92 (640)
T ss_pred chhhcccccc
Confidence 9998854443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.57 E-value=6.8e-08 Score=106.68 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..+...|. .+.++++|..+|+... .|+||.||+-||||.|+.+|+..+.|.+.++|+.|+.+||.||.+||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 44555555 4889999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCH
Q 038229 258 PKGHY 262 (467)
Q Consensus 258 ~~~S~ 262 (467)
...+.
T Consensus 363 ~ee~~ 367 (720)
T KOG1472|consen 363 SEESH 367 (720)
T ss_pred cccch
Confidence 86543
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.19 E-value=3.2e-07 Score=94.24 Aligned_cols=93 Identities=28% Similarity=0.283 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHH
Q 038229 185 GEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVY 264 (467)
Q Consensus 185 ~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~ 264 (467)
+.++.+|-+...-..|.-||.... .|+|.+||+.|||+.|++.|++.++|.+..+|..|.+|+..||..||...+.++
T Consensus 25 ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~ 102 (418)
T KOG1828|consen 25 EHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPI 102 (418)
T ss_pred HHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccc
Confidence 367777777777778888998887 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038229 265 AMAETLSAKFEQMFQ 279 (467)
Q Consensus 265 ~~A~~L~~~Fe~~~~ 279 (467)
..|++|..+-..++.
T Consensus 103 ~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 103 VAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccchhhcchhh
Confidence 999998776554444
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.08 E-value=2e-06 Score=88.51 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=75.1
Q ss_pred HHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHH
Q 038229 187 ILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAM 266 (467)
Q Consensus 187 IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~ 266 (467)
...+|........|..+|.... +|.|..+|++|+|++|++.|...+.|.| -+|..|+.||+.||++||.+...+|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 3455555666888999998877 9999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 038229 267 AETLSA 272 (467)
Q Consensus 267 A~~L~~ 272 (467)
|..+..
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 998766
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.81 E-value=0.00032 Score=73.36 Aligned_cols=91 Identities=31% Similarity=0.459 Sum_probs=81.7
Q ss_pred HHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHH
Q 038229 188 LTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMA 267 (467)
Q Consensus 188 L~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A 267 (467)
+.....+-.+|+|..++.... .|+|+++|..+|++.|.+.+|..+.|....+|..|..++|.||..||+....++.-+
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred ccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence 333455667999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038229 268 ETLSAKFEQMFQK 280 (467)
Q Consensus 268 ~~L~~~Fe~~~~~ 280 (467)
..+...+......
T Consensus 350 ~~~~~~~~~~~~~ 362 (371)
T COG5076 350 NVLEDFVIKKTRL 362 (371)
T ss_pred cchhhhHhhhhhh
Confidence 9888887776654
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.69 E-value=0.017 Score=52.02 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 038229 221 PMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 221 PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~ 279 (467)
|.||.-|++||+.|.|.++.+|.+||-.|+.-++.=.+....+-+....+.-+|-+++.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me 117 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLME 117 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHH
Confidence 89999999999999999999999999999988877655433333333333344444443
No 54
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=92.01 E-value=0.15 Score=60.63 Aligned_cols=29 Identities=48% Similarity=0.525 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q 038229 429 SGTSTSSTDSEDSSSSTSSGSGSS-SSSDD 457 (467)
Q Consensus 429 s~ssssssss~~~ssssdSdS~Ss-S~s~~ 457 (467)
++++++|+|.|.++|+|||||+|| ||||.
T Consensus 436 s~~~S~SsS~SESsS~SDSESESSSSDSE~ 465 (1191)
T PF05110_consen 436 SSSSSSSSSESESSSSSDSESESSSSDSEE 465 (1191)
T ss_pred cCCCCCCCCCCCccCccccccccccccccc
Confidence 333333444456666777777766 55543
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.20 E-value=0.16 Score=57.64 Aligned_cols=61 Identities=28% Similarity=0.457 Sum_probs=52.2
Q ss_pred cCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 038229 218 IKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMF 278 (467)
Q Consensus 218 Ik~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~Fe~~~ 278 (467)
-.-|..|..|..+|+++.|++.+.|..||..|..||.+|.+-+.-+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 3458899999999999999999999999999999999999988877666777776665543
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=0.32 Score=57.02 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=56.1
Q ss_pred CccccCCCcccc---ccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHH--HHHHhhhhhhhcCCCC
Q 038229 197 GWAFNTPVDVVS---LRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAE--DVRLTFNNALVYNPKG 260 (467)
Q Consensus 197 a~~F~~PVd~~~---l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~--DVrLIf~NA~~YN~~~ 260 (467)
...|..|++... +.+++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 567888887432 225689999999999999999999999999999999 9999999999999965
No 57
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=86.24 E-value=0.47 Score=53.09 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 038229 349 ALDNDTLSQLVRFVDN 364 (467)
Q Consensus 349 ~L~~~TL~eL~~yV~~ 364 (467)
-|..-||+.|+.....
T Consensus 1192 flthvtlrrlrdvara 1207 (1463)
T PHA03308 1192 FLTHVTLRRLRDVARA 1207 (1463)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 4566777777665443
No 58
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=85.31 E-value=0.68 Score=55.32 Aligned_cols=21 Identities=48% Similarity=0.521 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 038229 440 DSSSSTSSGSGSSSSSDDDTA 460 (467)
Q Consensus 440 ~~ssssdSdS~SsS~s~~~~~ 460 (467)
+++|+|+|||+|+||||+|+-
T Consensus 439 ~S~SsS~SESsS~SDSESESS 459 (1191)
T PF05110_consen 439 SSSSSSESESSSSSDSESESS 459 (1191)
T ss_pred CCCCCCCCCccCccccccccc
Confidence 333555555555566655554
No 59
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=82.61 E-value=0.89 Score=41.85 Aligned_cols=20 Identities=55% Similarity=0.466 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 038229 437 DSEDSSSSTSSGSGSSSSSD 456 (467)
Q Consensus 437 ss~~~ssssdSdS~SsS~s~ 456 (467)
++.+++|++||||+++++++
T Consensus 138 ss~sSsSssdSdS~s~s~s~ 157 (177)
T KOG3116|consen 138 SSYSSSSSSDSDSESASDSD 157 (177)
T ss_pred cccccCCCCccccccccccC
Confidence 33344444445544444433
No 60
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=78.65 E-value=1.8 Score=44.60 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHhhhhh
Q 038229 234 NVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 234 ~~Y~s~~eF~~DVrLIf~NA 253 (467)
..|.-+.=|..|+-.++.+-
T Consensus 156 ~dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 156 EDYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hhcCcchhhhHHHHHhcCcc
Confidence 34666666666665555443
No 61
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=66.04 E-value=4 Score=44.84 Aligned_cols=6 Identities=50% Similarity=1.065 Sum_probs=2.4
Q ss_pred CCCCCC
Q 038229 459 TAQSPF 464 (467)
Q Consensus 459 ~~~s~~ 464 (467)
.-.||+
T Consensus 700 ~~rs~~ 705 (739)
T KOG2140|consen 700 RSRSPF 705 (739)
T ss_pred ccCCCc
Confidence 333443
No 62
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=64.94 E-value=1.9 Score=49.31 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=54.4
Q ss_pred ccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCC--------------C----------CHHH------HHHHHHHh
Q 038229 200 FNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVY--------------K----------CPQE------FAEDVRLT 249 (467)
Q Consensus 200 F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y--------------~----------s~~e------F~~DVrLI 249 (467)
|.-++|... .|-|..+..-|-+|+|++..|.+..| . ++.+ ..+-+.+|
T Consensus 86 lv~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i 163 (1113)
T KOG0644|consen 86 LVPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSI 163 (1113)
T ss_pred hccCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccc
Confidence 445667665 78899999999999999999998777 2 3333 67788899
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHH
Q 038229 250 FNNALVYNPKGHYVYAMAETLSA 272 (467)
Q Consensus 250 f~NA~~YN~~~S~v~~~A~~L~~ 272 (467)
-.||+.++.|++ +++-++.+.+
T Consensus 164 ~~at~~~akPgt-mvqkmk~ikr 185 (1113)
T KOG0644|consen 164 GCATFSIAKPGT-MVQKMKNIKR 185 (1113)
T ss_pred ccceeeecCcHH-HHHHHHHHHH
Confidence 999999999999 5555444443
No 63
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=60.40 E-value=1.3 Score=49.42 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=65.8
Q ss_pred ccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Q 038229 198 WAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAK 273 (467)
Q Consensus 198 ~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~ 273 (467)
..|..-++.+. +|.|+.+++-||.+....+++..++|.....|..|..++|.|+..|+....-++..+..|.+.
T Consensus 214 er~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 44556566665 899999999999999999999999999999999999999999999999999888888877654
No 64
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=43.44 E-value=29 Score=36.85 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCceecccC
Q 038229 409 GEEIPVQNYPPVVIERDD 426 (467)
Q Consensus 409 g~~~p~~~~ppv~iekd~ 426 (467)
++.+-..+.-|+-+|+++
T Consensus 371 ~d~~~~~~~~p~r~e~~~ 388 (425)
T KOG1869|consen 371 EDYIAKTNLAPIRVEKSA 388 (425)
T ss_pred CCcccccccccccccccc
Confidence 444445566777788877
No 65
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=42.96 E-value=77 Score=26.98 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 234 NVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 234 ~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
..|.|..-|...|..|-.....++..+..+..+|..+...|++.|++..
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4588888888888888777777777788999999999999999998643
No 66
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=40.36 E-value=74 Score=35.49 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=16.1
Q ss_pred eEEecccCCHHHHHHHHHHHHHHHHHhhh
Q 038229 343 IELDIEALDNDTLSQLVRFVDNFKKAEKD 371 (467)
Q Consensus 343 IEIDId~L~~~TL~eL~~yV~~~~k~~~k 371 (467)
-|+++|.+..=+-..=..|+..|-+....
T Consensus 38 eefn~dd~n~wm~ldd~nflntwtknvsd 66 (782)
T PF07218_consen 38 EEFNVDDINSWMKLDDANFLNTWTKNVSD 66 (782)
T ss_pred cccCcccchhcccccHHHHHHHHhhcccc
Confidence 35566655543333345677777665543
No 67
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=36.93 E-value=45 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhhh
Q 038229 225 GTVRSKLENNVYKCPQEFAEDVRLTFN 251 (467)
Q Consensus 225 ~TIk~KL~~~~Y~s~~eF~~DVrLIf~ 251 (467)
.-|+.++..|.|.+..|+++|...++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999998876553
No 68
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.85 E-value=38 Score=36.75 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.4
Q ss_pred hhhhhc
Q 038229 403 EEEVDI 408 (467)
Q Consensus 403 eEdVDI 408 (467)
++.||.
T Consensus 90 ~d~vd~ 95 (483)
T KOG2236|consen 90 DDLVDP 95 (483)
T ss_pred ccccch
Confidence 334443
No 69
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=28.97 E-value=33 Score=33.91 Aligned_cols=20 Identities=5% Similarity=0.110 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~~~ 279 (467)
+-.||+.-.+|.++-.-++.
T Consensus 101 ~~~iHkCKQrltkLTQyll~ 120 (303)
T COG5129 101 EKVIHKCKQRLTKLTQYLLK 120 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567766666665554444
No 70
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.39 E-value=75 Score=26.80 Aligned_cols=67 Identities=10% Similarity=0.292 Sum_probs=47.0
Q ss_pred ccccHHHHHHHHHHhc-cCCHHHHHHHHHHHHhhcCCCCCCCCCCC--eeEEecccC-CHHHHHHHHHHHHHHH
Q 038229 297 REMSLEEKMALGRSLE-ELPQEELGKLLGIVKKRNSGNGSLSCHGD--EIELDIEAL-DNDTLSQLVRFVDNFK 366 (467)
Q Consensus 297 r~mt~eEk~~L~~~i~-~L~~e~l~~Vi~II~~~~~~~p~~~~~~d--eIEIDId~L-~~~TL~eL~~yV~~~~ 366 (467)
..+|.+|..+++..-+ .+..++...|+.+++... .++....+ .+-.+|... +++|..+...++..|.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~---inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf~ 83 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKN---INIFNEQERKKLLKEIAKITSPQTAKQVNELFEQFT 83 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 5689999999998875 678999999999999887 44432221 233344555 6777777777766653
No 71
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=25.80 E-value=57 Score=23.73 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhhhh
Q 038229 116 RLVSDLERVRNLGSR 130 (467)
Q Consensus 116 Rl~~eLe~VR~l~~k 130 (467)
|+|.|||+|+.++++
T Consensus 30 rfraelekvkl~~k~ 44 (48)
T PF10872_consen 30 RFRAELEKVKLMQKR 44 (48)
T ss_pred hHHHHHHHHHHHHHh
Confidence 678999999887765
No 72
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=25.63 E-value=1.6e+02 Score=28.05 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038229 94 ESDYVTFNLGAYTRRELKDLRKRLVSDLERVRNLGSRIANS 134 (467)
Q Consensus 94 ~~~~~~f~~s~~s~~er~~Lr~Rl~~eLe~VR~l~~ki~~~ 134 (467)
-+..+.+.++.||..-|++|.+.++...|+.|...+.|+..
T Consensus 94 dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~ 134 (185)
T PRK00083 94 DGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRD 134 (185)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999887777553
No 73
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=23.66 E-value=1.5e+02 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=33.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038229 94 ESDYVTFNLGAYTRRELKDLRKRLVSDLERVRNLGSRIANS 134 (467)
Q Consensus 94 ~~~~~~f~~s~~s~~er~~Lr~Rl~~eLe~VR~l~~ki~~~ 134 (467)
-+..+.+.+..+|..-|++|.+.++..+|+.|...+.++..
T Consensus 76 d~~~i~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~ 116 (165)
T PF01765_consen 76 DGNTIRVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRD 116 (165)
T ss_dssp ETTEEEEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999888877653
No 74
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=23.12 E-value=2e+02 Score=22.93 Aligned_cols=41 Identities=15% Similarity=0.382 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCeeEEecccCCHHHHHHHHHHHHHHHHH
Q 038229 317 EELGKLLGIVKKRNSGNGSLSCHGDEIELDIEALDNDTLSQLVRFVDNFKKA 368 (467)
Q Consensus 317 e~l~~Vi~II~~~~~~~p~~~~~~deIEIDId~L~~~TL~eL~~yV~~~~k~ 368 (467)
++...+++.|++.. -+-+||+.|+.+..+++-.|+......
T Consensus 10 ~D~~~i~~~l~~g~-----------~Vivnl~~l~~~~~~Ri~Dfl~G~~~a 50 (73)
T PF04472_consen 10 EDAREIVDALREGK-----------IVIVNLENLDDEEAQRILDFLSGAVYA 50 (73)
T ss_dssp GGHHHHHHHHHTT-------------EEEE-TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----------EEEEECCCCCHHHHHHHHHHHhchhee
Confidence 45566777776544 789999999999988888888775433
No 75
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=23.07 E-value=2e+02 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=35.7
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038229 94 ESDYVTFNLGAYTRRELKDLRKRLVSDLERVRNLGSRIANS 134 (467)
Q Consensus 94 ~~~~~~f~~s~~s~~er~~Lr~Rl~~eLe~VR~l~~ki~~~ 134 (467)
-+..+.+.++.+|..-|++|.+.++...|+.|...+.|+..
T Consensus 85 dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~ 125 (176)
T TIGR00496 85 DGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRD 125 (176)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999888877553
No 76
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=21.95 E-value=2.2e+02 Score=26.98 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038229 94 ESDYVTFNLGAYTRRELKDLRKRLVSDLERVRNLGSRIANS 134 (467)
Q Consensus 94 ~~~~~~f~~s~~s~~er~~Lr~Rl~~eLe~VR~l~~ki~~~ 134 (467)
-+..+.+.+..+|..-|++|.+.++...|+.|...+.|+..
T Consensus 90 dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~ 130 (179)
T cd00520 90 DGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRD 130 (179)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999887777543
No 77
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=21.41 E-value=1.1e+02 Score=25.26 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=20.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHhh
Q 038229 225 GTVRSKLENNVYKCPQEFAEDVRLTF 250 (467)
Q Consensus 225 ~TIk~KL~~~~Y~s~~eF~~DVrLIf 250 (467)
.-|+.++..|.|.|..|+++|--.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34899999999999999998854333
Done!