Query 038229
Match_columns 467
No_of_seqs 393 out of 1418
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g0l_A Hwalp4, bromodomain adj 100.0 2.4E-28 8.2E-33 213.0 12.8 102 179-282 13-114 (117)
2 2oss_A HUNK1 protein, bromodom 100.0 1.8E-28 6.2E-33 217.1 11.8 106 177-282 19-124 (127)
3 2ouo_A HUNK1 protein, bromodom 100.0 1.5E-28 5E-33 218.6 10.0 107 176-282 19-128 (130)
4 3d7c_A General control of amin 100.0 5E-28 1.7E-32 209.6 12.3 105 176-282 4-108 (112)
5 3jvl_A Bromodomain-containing 99.9 1.5E-28 5.2E-33 215.2 8.2 108 176-283 6-116 (120)
6 2d9e_A Peregrin; four-helix bu 99.9 1E-27 3.5E-32 210.6 13.1 110 178-289 6-115 (121)
7 3mb3_A PH-interacting protein; 99.9 6.6E-28 2.3E-32 215.4 11.6 107 176-284 18-125 (135)
8 3nxb_A CAT eye syndrome critic 99.9 4.2E-28 1.4E-32 211.2 9.7 103 176-280 13-115 (116)
9 3p1f_A CREB-binding protein; s 99.9 2.2E-27 7.7E-32 207.5 13.5 108 176-283 8-116 (119)
10 4alg_A Bromodomain-containing 99.9 9.1E-28 3.1E-32 219.3 11.3 109 176-284 29-137 (154)
11 1e6i_A Transcriptional activat 99.9 1.3E-27 4.6E-32 209.8 11.0 101 180-282 14-114 (121)
12 2i7k_A Bromodomain-containing 99.9 2.9E-27 9.8E-32 206.7 12.9 104 176-281 5-108 (117)
13 3q2e_A Bromodomain and WD repe 99.9 2.5E-27 8.7E-32 208.5 12.4 105 178-284 9-114 (123)
14 3fkm_X Signaling protein; brom 99.9 2.5E-27 8.7E-32 218.9 12.5 107 176-282 18-124 (166)
15 2dat_A Possible global transcr 99.9 3E-27 1E-31 208.1 11.6 103 178-282 12-120 (123)
16 2yyn_A Transcription intermedi 99.9 5.2E-27 1.8E-31 209.8 12.5 103 177-282 18-122 (135)
17 2grc_A Probable global transcr 99.9 4.6E-27 1.6E-31 208.5 11.7 105 178-284 10-121 (129)
18 3mb4_A Protein polybromo-1; PB 99.9 4.2E-27 1.4E-31 207.3 10.3 104 178-283 14-123 (124)
19 3rcw_A Bromodomain-containing 99.9 1.2E-26 4.1E-31 207.2 12.9 107 176-284 10-116 (135)
20 3iu5_A Protein polybromo-1; PB 99.9 1.2E-26 4.1E-31 202.1 11.5 103 179-283 5-113 (116)
21 3ljw_A Protein polybromo-1; al 99.9 1.5E-26 5.3E-31 202.6 11.5 106 176-283 5-116 (120)
22 3k2j_A Protein polybromo-1; PB 99.9 2.4E-26 8.2E-31 204.3 12.5 107 176-284 14-126 (130)
23 3hme_A Bromodomain-containing 99.9 2.1E-26 7E-31 202.8 11.8 103 178-282 12-114 (123)
24 3mqm_A Probable histone-lysine 99.9 3.7E-26 1.3E-30 201.8 12.4 105 178-284 8-118 (126)
25 2ri7_A Nucleosome-remodeling f 99.9 1.1E-25 3.9E-30 208.4 8.5 103 178-282 71-173 (174)
26 3uv4_A Second bromodomain of h 99.9 3.2E-25 1.1E-29 203.3 11.4 103 180-284 30-133 (158)
27 3o36_A Transcription intermedi 99.9 1E-24 3.5E-29 204.0 12.5 103 176-281 78-182 (184)
28 3tlp_A Protein polybromo-1; PB 99.9 8.3E-25 2.8E-29 198.6 10.9 103 180-284 25-134 (150)
29 3dai_A ATPase family AAA domai 99.9 1.5E-24 5.2E-29 192.6 12.2 102 176-279 7-112 (130)
30 3uv5_A Transcription initiatio 99.9 6.3E-24 2.1E-28 209.5 12.6 106 176-283 11-116 (265)
31 2ro1_A Transcription intermedi 99.9 6.2E-24 2.1E-28 200.0 9.0 100 178-284 75-179 (189)
32 2dkw_A Hypothetical protein KI 99.9 2.3E-23 8E-28 185.3 12.1 97 176-279 9-109 (131)
33 3u5n_A E3 ubiquitin-protein li 99.9 2.3E-23 7.7E-28 198.5 11.4 104 176-282 78-201 (207)
34 3aad_A Transcription initiatio 99.9 1.8E-23 6.3E-28 209.0 10.0 105 176-282 44-148 (292)
35 3uv5_A Transcription initiatio 99.9 8.5E-23 2.9E-27 201.4 12.1 104 179-284 136-240 (265)
36 3aad_A Transcription initiatio 99.9 6.4E-22 2.2E-26 197.8 12.0 98 184-283 174-272 (292)
37 2r0y_A Chromatin structure-rem 99.8 1.1E-21 3.8E-26 197.7 8.5 86 193-280 177-262 (311)
38 2r10_A Chromatin structure-rem 99.8 1.9E-21 6.6E-26 199.7 9.1 85 194-280 228-312 (361)
39 2r10_A Chromatin structure-rem 99.8 6.9E-20 2.3E-24 188.1 8.1 99 179-281 78-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.1E-19 3.6E-24 183.3 7.7 100 179-282 28-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 2.6E-17 9E-22 148.2 13.1 100 179-284 7-112 (147)
42 2jns_A Bromodomain-containing 99.6 1.6E-15 5.6E-20 126.4 4.1 72 294-368 13-85 (90)
43 3lqh_A Histone-lysine N-methyl 99.5 4.2E-14 1.4E-18 132.3 8.9 91 178-281 74-164 (183)
44 2lm0_A AF4/FMR2 family member 95.1 0.024 8.4E-07 49.0 5.2 60 300-363 60-120 (125)
45 2l2l_A Transcriptional repress 37.4 38 0.0013 23.6 3.7 32 106-137 2-36 (43)
46 1gk7_A Vimentin; intermediate 33.6 42 0.0014 23.1 3.5 23 107-129 5-27 (39)
No 1
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=2.4e-28 Score=213.05 Aligned_cols=102 Identities=30% Similarity=0.554 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 179 NAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
..++.|..||..|++++.+++|.+||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 259 KGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 259 ~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
+++.++.+|..|++.|++.|+++-
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 2
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.8e-28 Score=217.11 Aligned_cols=106 Identities=40% Similarity=0.620 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhc
Q 038229 177 TKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVY 256 (467)
Q Consensus 177 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~Y 256 (467)
...+...|..||..|++++.+|+|.+|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999876679999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 257 NPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 257 N~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
|+++|.+|.+|..|++.|++.|+++.
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998764
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=1.5e-28 Score=218.56 Aligned_cols=107 Identities=46% Similarity=0.786 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQ---GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~---a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
.+...+++|..||..|+.++. +|+|.+|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999875 89999999998878999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
|++||++++.+|.+|..|++.|++.|++++
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999775
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=5e-28 Score=209.57 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....+...|..||..|++++.+++|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 81 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCRE 81 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||++++.+|.+|..|++.|++.|+++.
T Consensus 82 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 82 YNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999764
No 5
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=1.5e-28 Score=215.20 Aligned_cols=108 Identities=45% Similarity=0.782 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQ---GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~---a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
.+..++++|..||..|++++. +|+|.+||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 345689999999999999988 99999999999989999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
|++||++++.++.+|..|++.|++.|++++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999998754
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=210.59 Aligned_cols=110 Identities=30% Similarity=0.446 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..+...|..||..|++++.+++|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3467899999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQKLSKQQQRQG 289 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~ie~~~~r~~ 289 (467)
+++|.+|.+|..|++.|+.+|.++....++.+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~ 115 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQAEKMG 115 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999877655544
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=6.6e-28 Score=215.36 Aligned_cols=107 Identities=36% Similarity=0.637 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....|.+.|..||..|++++.+++|.+||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 256 YNPK-GHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 256 YN~~-~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
||++ ++.||.+|..|++.|++.|..+..+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 9999999999999999999987543
No 8
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.95 E-value=4.2e-28 Score=211.18 Aligned_cols=103 Identities=27% Similarity=0.481 Sum_probs=97.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....+++.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||++
T Consensus 13 ~~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 90 (116)
T 3nxb_A 13 ELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRK 90 (116)
T ss_dssp --CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 444588999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQK 280 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ 280 (467)
||++++.++.+|..|++.|++.|.+
T Consensus 91 yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 91 YNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
No 9
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=2.2e-27 Score=207.48 Aligned_cols=108 Identities=35% Similarity=0.586 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHHHHc-CCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMK-DKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~-~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
..+++.+.|..+|..|++ ++.+++|.+||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 557799999999999988 6799999999999876799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
+||+++|.+|.+|..|++.|++.+..+-.
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 10
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.95 E-value=9.1e-28 Score=219.32 Aligned_cols=109 Identities=36% Similarity=0.592 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....+...|..||..|++++.+|+|.+||++..+++||||+||++||||+||++||+++.|.++.+|++||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999999999777999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
||++++.|+.+|..|++.|++.|+++...
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 99999999999999999999999988643
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.3e-27 Score=209.81 Aligned_cols=101 Identities=36% Similarity=0.571 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCC
Q 038229 180 AMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPK 259 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~ 259 (467)
+++.|..||..|++++.+++|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 038229 260 GHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 260 ~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
++.+|.+|..|++.|++.++++.
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999874
No 12
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=2.9e-27 Score=206.68 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
+...+.+.|..||..|++++.+++|..||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999865 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
||+++|.++.+|..|++.|++++...
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=2.5e-27 Score=208.47 Aligned_cols=105 Identities=40% Similarity=0.723 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..|.++|..||..|++++.+++|.+||++.. +||||++|++||||+||++||+.|.|.++.+|.+||+|||.||+.||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4589999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 258 PK-GHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 258 ~~-~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
++ ++.+|.+|..|++.|+++|+++...
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999988644
No 14
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=2.5e-27 Score=218.86 Aligned_cols=107 Identities=27% Similarity=0.476 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....|.+.|..||..|++++.+++|..||++..+++||||+||++||||+||++||.+|.|.++.+|++||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998777999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||++++.|+.+|..|++.|++.|.++.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999864
No 15
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=208.06 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhh
Q 038229 178 KNAMRRCGEILTKLMKDK------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFN 251 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~ 251 (467)
..+.++|..||+.|++++ .+++|.+||+... +||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 568899999999999986 5899999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 252 NALVYNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 252 NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||++||++++.+|.+|..|++.|+++++++.
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998753
No 16
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=5.2e-27 Score=209.81 Aligned_cols=103 Identities=33% Similarity=0.579 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhC--CCCCCHHHHHHHHHHhhhhhh
Q 038229 177 TKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLEN--NVYKCPQEFAEDVRLTFNNAL 254 (467)
Q Consensus 177 ~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~--~~Y~s~~eF~~DVrLIf~NA~ 254 (467)
....+++|..||..|++|+.+++|.+||+. .+||||++|++||||+||++||++ +.|.++.+|.+||+|||.||+
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~ 94 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999997 389999999999999999999998 599999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 255 VYNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 255 ~YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
+||++++.+|.+|..|++.|+++|+++.
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 95 EFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999874
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=4.6e-27 Score=208.54 Aligned_cols=105 Identities=25% Similarity=0.445 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhh
Q 038229 178 KNAMRRCGEILTKLMKDK-------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTF 250 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~-------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf 250 (467)
..+.++|..||..|++++ .+++|..||+... +||||+||++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 568999999999999886 4899999999876 9999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 251 NNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 251 ~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
.||++||+++|.+|.+|..|++.|++.|++++..
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999998765
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=4.2e-27 Score=207.35 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHc------CCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhh
Q 038229 178 KNAMRRCGEILTKLMK------DKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFN 251 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~------~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~ 251 (467)
..+.+.|..||+.|++ ++.+++|.+||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999998 555799999999876 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 252 NALVYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 252 NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
||++||++++.+|.+|..|++.|++.|++++.
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998864
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=207.21 Aligned_cols=107 Identities=28% Similarity=0.444 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
.+..+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 87 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMK 87 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344589999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
||++++.+|.+|..|++.|++.|+.+...
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 88 YNARDTVFYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=202.07 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 179 NAMRRCGEILTKLMKDK------QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~------~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
..++.|..||..|++++ .+++|.+||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999885 4999999999876 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
|++||+++|.+|.+|..|++.|++.++++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998864
No 21
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.94 E-value=1.5e-26 Score=202.63 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 038229 176 STKNAMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLT 249 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLI 249 (467)
....+.+.|..||..|++++. +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|.+||+||
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 82 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 346688999999999999877 999999999877 999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 250 FNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 250 f~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
|.||++||++++.+|.+|..|++.|++.|++++.
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 83 AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999875
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.4e-26 Score=204.32 Aligned_cols=107 Identities=22% Similarity=0.320 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHh
Q 038229 176 STKNAMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLT 249 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLI 249 (467)
....+..+|..|+..|.++.. +++|.+||+... +||||++|++||||+||++||+++.|.++.+|.+||+||
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 567899999999999998765 999999999876 999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 250 FNNALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 250 f~NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
|.||++||+++|.++.+|..|++.|++.|+++...
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998754
No 23
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=2.1e-26 Score=202.80 Aligned_cols=103 Identities=29% Similarity=0.402 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
..+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
++++.+|.+|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=201.77 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhh
Q 038229 178 KNAMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFN 251 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~ 251 (467)
..+.+.|..|++.|+++.+ +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5578899999999998764 999999999886 99999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 252 NALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 252 NA~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
||++||+++|.+|.+|..|++.|++.++++...
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987543
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.92 E-value=1.1e-25 Score=208.39 Aligned_cols=103 Identities=31% Similarity=0.529 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
...++.|..||..|++++.+++|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
++++.+|.+|..|++.|++.|++++
T Consensus 149 ~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 149 PSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988653
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=3.2e-25 Score=203.26 Aligned_cols=103 Identities=25% Similarity=0.437 Sum_probs=92.0
Q ss_pred HHHHHHHHHHH-HHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCC
Q 038229 180 AMRRCGEILTK-LMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNP 258 (467)
Q Consensus 180 ~~k~c~~IL~~-L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~ 258 (467)
+...+..|+.. |+.++.+|+|..||++.. +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 33344444433 566889999999999886 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 259 KGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 259 ~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
+++.+|.+|..|.+.|++.|.+++..
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEH 133 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=1e-24 Score=204.05 Aligned_cols=103 Identities=33% Similarity=0.579 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhC--CCCCCHHHHHHHHHHhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLEN--NVYKCPQEFAEDVRLTFNNA 253 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~--~~Y~s~~eF~~DVrLIf~NA 253 (467)
....++++|+.||..|+.++.+++|..||+.. +||||+||++||||+||++||++ +.|.++.+|.+||+|||.||
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na 154 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 154 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 44668899999999999999999999999854 89999999999999999999998 79999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 254 LVYNPKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 254 ~~YN~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
++||++++.|+.+|..|++.|+++|+++
T Consensus 155 ~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 155 AEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=8.3e-25 Score=198.59 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCC-------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 180 AMRRCGEILTKLMKDKQ-------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 180 ~~k~c~~IL~~L~~~~~-------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
...+|..||..|+++.. +++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46778888888887654 999999999876 999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
|++||++++.||.+|..|++.|++.|+++...
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999988643
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=1.5e-24 Score=192.55 Aligned_cols=102 Identities=28% Similarity=0.383 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
.+..+...|..++..|+.++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 7 ~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (130)
T 3dai_A 7 TFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALE 84 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHH----HHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYV----YAMAETLSAKFEQMFQ 279 (467)
Q Consensus 256 YN~~~S~v----~~~A~~L~~~Fe~~~~ 279 (467)
||++++++ +.+|..|++.+..+++
T Consensus 85 yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 85 YNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 6788888888888886
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.90 E-value=6.3e-24 Score=209.55 Aligned_cols=106 Identities=23% Similarity=0.432 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
+...+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 11 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (265)
T 3uv5_A 11 PMVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 88 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh
Confidence 456789999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
||++++.++.+|..|.+.|++.|++++.
T Consensus 89 yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 89 YNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998653
No 31
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=6.2e-24 Score=199.98 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccC--CCCCHHHHHHHhhCC---CCCCHHHHHHHHHHhhhh
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIK--KPMDLGTVRSKLENN---VYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk--~PMDL~TIk~KL~~~---~Y~s~~eF~~DVrLIf~N 252 (467)
...+++|..||..|+.|+.+|+|++||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 67999998 899999999999999 999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
|++|| +++.++.+|..|++.|++.|+++...
T Consensus 149 ~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 149 FNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp HHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999 58889999999999999999987543
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=185.32 Aligned_cols=97 Identities=30% Similarity=0.474 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
....+...|..||..|++++.+++|..| +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred cCCCCCH----HHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHY----VYAMAETLSAKFEQMFQ 279 (467)
Q Consensus 256 YN~~~S~----v~~~A~~L~~~Fe~~~~ 279 (467)
||+++|+ |+.+|..|++.|...++
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 56889999999888875
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2.3e-23 Score=198.51 Aligned_cols=104 Identities=32% Similarity=0.542 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhC---CCCCCHHHHHHHHHHhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLEN---NVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~---~~Y~s~~eF~~DVrLIf~N 252 (467)
....++++|+.||..|++++.+++|.+||+. ++||||+||++||||+||++||++ |.|.++.+|.+||+|||.|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999986 399999999999999999999997 7999999999999999999
Q ss_pred hhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 253 ALVYNP-----------------KGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 253 A~~YN~-----------------~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
|++||+ +++.++.+|..|+..|+++|+++-
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999 999999999999999999999874
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=209.00 Aligned_cols=105 Identities=23% Similarity=0.435 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhh
Q 038229 176 STKNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 176 ~~~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~ 255 (467)
+...+...|..||..|+.++.+++|.+||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 44 p~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~ 121 (292)
T 3aad_A 44 PMVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 121 (292)
T ss_dssp HHHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||++++.++.+|..|.+.|++.|++++
T Consensus 122 yN~~~s~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 122 YNGPKHSLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp HTCSSSHHHHHHTHHHHTTTTTGGGSH
T ss_pred HcCCchHHHHHHHHHHHHHHhhhhcch
Confidence 999999999999999999998887654
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=8.5e-23 Score=201.44 Aligned_cols=104 Identities=25% Similarity=0.432 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHH-HHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 179 NAMRRCGEILTK-LMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 179 ~~~k~c~~IL~~-L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
.+...|..++.+ |++++.+|+|.+||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344555666544 788999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
+++|.+|.+|..|.+.|+..|+++...
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987643
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=197.84 Aligned_cols=98 Identities=27% Similarity=0.484 Sum_probs=90.9
Q ss_pred HHHHH-HHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCH
Q 038229 184 CGEIL-TKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHY 262 (467)
Q Consensus 184 c~~IL-~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~ 262 (467)
+..++ .+|+.++.+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34444 34788999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038229 263 VYAMAETLSAKFEQMFQKLSK 283 (467)
Q Consensus 263 v~~~A~~L~~~Fe~~~~~ie~ 283 (467)
+|.+|..|++.|+..+..++.
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.84 E-value=1.1e-21 Score=197.71 Aligned_cols=86 Identities=34% Similarity=0.471 Sum_probs=83.2
Q ss_pred cCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Q 038229 193 KDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSA 272 (467)
Q Consensus 193 ~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~ 272 (467)
.|+.+++|.+||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3668999999999886 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 038229 273 KFEQMFQK 280 (467)
Q Consensus 273 ~Fe~~~~~ 280 (467)
.|++++++
T Consensus 255 ~f~~~~~~ 262 (311)
T 2r0y_A 255 YFNYLIQK 262 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999997
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=1.9e-21 Score=199.68 Aligned_cols=85 Identities=33% Similarity=0.464 Sum_probs=82.8
Q ss_pred CCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Q 038229 194 DKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYNPKGHYVYAMAETLSAK 273 (467)
Q Consensus 194 ~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN~~~S~v~~~A~~L~~~ 273 (467)
|+.+|+|.+||++.. +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.||.+|..|++.
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 578999999999886 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 038229 274 FEQMFQK 280 (467)
Q Consensus 274 Fe~~~~~ 280 (467)
|+.+|++
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999997
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=6.9e-20 Score=188.15 Aligned_cols=99 Identities=20% Similarity=0.155 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHcCC--CCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHhhhhhhh
Q 038229 179 NAMRRCGEILTKLMKDK--QGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK-CPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~--~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~-s~~eF~~DVrLIf~NA~~ 255 (467)
.+...|..+|+.|.+.. .+++|.+||+... +||||+||++||||+||++|| +.|. ++.+|++||+|||.||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 35578889999887643 4899999999877 999999999999999999999 5555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
||++++.||.+|..|+++|++.|.+.
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998865
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1.1e-19 Score=183.27 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcC--CCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCC-CHHHHHHHHHHhhhhhhh
Q 038229 179 NAMRRCGEILTKLMKD--KQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYK-CPQEFAEDVRLTFNNALV 255 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~--~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~-s~~eF~~DVrLIf~NA~~ 255 (467)
.|...|..+|..+.+. ..+++|.+||+... +||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~ 103 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 103 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHH
Confidence 3566676777777653 35899999999887 999999999999999999999 5565 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 038229 256 YNPKGHYVYAMAETLSAKFEQMFQKLS 282 (467)
Q Consensus 256 YN~~~S~v~~~A~~L~~~Fe~~~~~ie 282 (467)
||+++|.||.+|..|++.|++.|.+..
T Consensus 104 yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 104 YNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998753
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=148.25 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCC------CccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhh
Q 038229 179 NAMRRCGEILTKLMKDKQ------GWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNN 252 (467)
Q Consensus 179 ~~~k~c~~IL~~L~~~~~------a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~N 252 (467)
.+...+..|+..++.+.+ +.+|.+.++.. |+||. ++||+|.+|++||..|.|.++++|..||.|||.|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 356777899999998875 78899988765 78998 9999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 038229 253 ALVYNPKGHYVYAMAETLSAKFEQMFQKLSKQ 284 (467)
Q Consensus 253 A~~YN~~~S~v~~~A~~L~~~Fe~~~~~ie~~ 284 (467)
|++||.+||+||.+|..|+++|.+.+.++...
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998755
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=1.6e-15 Score=126.38 Aligned_cols=72 Identities=39% Similarity=0.623 Sum_probs=66.2
Q ss_pred cccccccHHHHHHHHHHhccCCHHHHHHHHHHHHhhcCCCCCCC-CCCCeeEEecccCCHHHHHHHHHHHHHHHHH
Q 038229 294 GKAREMSLEEKMALGRSLEELPQEELGKLLGIVKKRNSGNGSLS-CHGDEIELDIEALDNDTLSQLVRFVDNFKKA 368 (467)
Q Consensus 294 ~k~r~mt~eEk~~L~~~i~~L~~e~l~~Vi~II~~~~~~~p~~~-~~~deIEIDId~L~~~TL~eL~~yV~~~~k~ 368 (467)
+.+++||.+||++|+..|+.|++++|.+|++||++++ |.+. ..++||||||+.|++.|||+|++||.+|++.
T Consensus 13 ~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~---p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~ 85 (90)
T 2jns_A 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSRE---PSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRK 85 (90)
T ss_dssp SSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTC---GGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---ccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 4479999999999999999999999999999999999 6665 4678999999999999999999999999754
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.49 E-value=4.2e-14 Score=132.27 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCccccccCCCcccccCCCCCHHHHHHHhhCCCCCCHHHHHHHHHHhhhhhhhcC
Q 038229 178 KNAMRRCGEILTKLMKDKQGWAFNTPVDVVSLRLRDYHDIIKKPMDLGTVRSKLENNVYKCPQEFAEDVRLTFNNALVYN 257 (467)
Q Consensus 178 ~~~~k~c~~IL~~L~~~~~a~~F~~PVd~~~l~~PdY~~iIk~PMDL~TIk~KL~~~~Y~s~~eF~~DVrLIf~NA~~YN 257 (467)
.++...+..||..|..++.+++|+.. .++.||||.||++||+.|.|.++.+|..||+|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 45567789999999999999999762 25999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 038229 258 PKGHYVYAMAETLSAKFEQMFQKL 281 (467)
Q Consensus 258 ~~~S~v~~~A~~L~~~Fe~~~~~i 281 (467)
.+.+.+..++..|+.+|+++++++
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~v 164 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERV 164 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999975
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.14 E-value=0.024 Score=48.97 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHhccCC-HHHHHHHHHHHHhhcCCCCCCCCCCCeeEEecccCCHHHHHHHHHHHH
Q 038229 300 SLEEKMALGRSLEELP-QEELGKLLGIVKKRNSGNGSLSCHGDEIELDIEALDNDTLSQLVRFVD 363 (467)
Q Consensus 300 t~eEk~~L~~~i~~L~-~e~l~~Vi~II~~~~~~~p~~~~~~deIEIDId~L~~~TL~eL~~yV~ 363 (467)
-.+|...|.+.|-.|. .+.|.+|+++|.+. ++....+..+.+|+.+||..|+++|..|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~t----G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEET----GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTS----CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhc----CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 3678889999999997 66799999999986 567778889999999999999999999974
No 45
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=37.40 E-value=38 Score=23.64 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHH--HHHH-hhhhhhcccccc
Q 038229 106 TRRELKDLRKRLVSDL--ERVR-NLGSRIANSDFQ 137 (467)
Q Consensus 106 s~~er~~Lr~Rl~~eL--e~VR-~l~~ki~~~~~~ 137 (467)
|..||..+.+.|+.|| |..+ .|.++++..+..
T Consensus 2 s~~ere~~i~~LreeLR~EEaKLvLLKKlrqSQ~q 36 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQ 36 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999 4444 567777665543
No 46
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.63 E-value=42 Score=23.08 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 038229 107 RRELKDLRKRLVSDLERVRNLGS 129 (467)
Q Consensus 107 ~~er~~Lr~Rl~~eLe~VR~l~~ 129 (467)
|.+.+.|-.||..-+++||.|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~ 27 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQ 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999998865
Done!