BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038230
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BMB|A Chain A, X-Ray Structure Of The Bifunctional 6-Hydroxymethyl-7,8-
Dihydroxypterin Pyrophosphokinase Dihydropteroate
Synthase From Saccharomyces Cerevisiae
Length = 545
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 161/519 (31%), Positives = 263/519 (50%), Gaps = 95/519 (18%)
Query: 48 IAMGSNVGDRLCNFNEALQLM-KKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
+A GSN+GDR + ALQL+ ++ V + ++E+EP Y DQ F+N V T L
Sbjct: 23 LAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVETLL 82
Query: 107 GPHELLGVLKKIE-KDMGRTNGIRHGPRPIDLDILFYGRFS-----IHSDTLTVPHERIW 160
P ELL + KKIE +++ R +GPR IDLDI+ + + ++ L +PH R+
Sbjct: 83 TPSELLKLCKKIEYEELQRVKHFDNGPRTIDLDIVMFLNSAGEDIIVNEPDLNIPHPRML 142
Query: 161 ERPFVVAPLLDLLG---------------------SSVESDTKLGGESLIGKEGMK-RVL 198
ER FV+ PL +L+ + DT L + G++ R L
Sbjct: 143 ERTFVLEPLCELISPVHLHPVTAEPIVDHLKQLYDKQHDEDTLWKLVPLPYRSGVEPRFL 202
Query: 199 PI--GNLLWDWSLKTS--------VMGILNLTPDSFSDGGK-FQSVEAAVSQV------R 241
L +++ +T+ +M I N TPDSFSDGG+ F +E+ ++ +
Sbjct: 203 KFKTATKLDEFTGETNRITVSPTYIMAIFNATPDSFSDGGEHFADIESQLNDIIKLCKDA 262
Query: 242 LMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM--EGKLVSVDTFYS 299
L + E +ID+G STRP + + S E+E+ R IP+++A+ E+ + ++S+DT+ S
Sbjct: 263 LYLHESV-IIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRS 321
Query: 300 KVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHMRGDPSTM---------- 348
VA EA+ G I+ND+S G D +M+ V+A ++ Y+ H RGD STM
Sbjct: 322 NVAKEAIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFA 381
Query: 349 ----------QNEENLQYDDV------CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
N + Q DD+ + V E+ + A +G+ W+I+IDPGLGF
Sbjct: 382 LGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGF 441
Query: 393 SKKAEHNLDIL-------------------LGLAASHAPILIGPSRKRFLGEICNRPSAD 433
+K + NL I+ + + + P+L+GPSRK+F+G I A
Sbjct: 442 AKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRNMPVLLGPSRKKFIGHITKDVDAK 501
Query: 434 ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
+RD AT A + + + G+++VRVH++++ ++KL D++
Sbjct: 502 QRDFATGAVVASCIGFGSDMVRVHDVKNCSKSIKLADAI 540
>pdb|1TWS|A Chain A, Dihydropteroate Synthetase From Bacillus Anthracis
pdb|1TWS|B Chain B, Dihydropteroate Synthetase From Bacillus Anthracis
pdb|1TWW|A Chain A, Dihydropteroate Synthetase, With Bound Substrate Analogue
Ptpp, From Bacillus Anthracis
pdb|1TWW|B Chain B, Dihydropteroate Synthetase, With Bound Substrate Analogue
Ptpp, From Bacillus Anthracis
pdb|1TWZ|A Chain A, Dihydropteroate Synthetase, With Bound Substrate Analogue
Ptp, From Bacillus Anthracis
pdb|1TWZ|B Chain B, Dihydropteroate Synthetase, With Bound Substrate Analogue
Ptp, From Bacillus Anthracis
pdb|1TX0|A Chain A, Dihydropteroate Synthetase, With Bound Product Analogue
Pteroic Acid, From Bacillus Anthracis
pdb|1TX0|B Chain B, Dihydropteroate Synthetase, With Bound Product Analogue
Pteroic Acid, From Bacillus Anthracis
pdb|1TX2|A Chain A, Dihydropteroate Synthetase, With Bound Inhibitor Manic,
From Bacillus Anthracis
pdb|1TX2|B Chain B, Dihydropteroate Synthetase, With Bound Inhibitor Manic,
From Bacillus Anthracis
pdb|3H21|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H21|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H22|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H22|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H23|A Chain A, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H23|B Chain B, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H24|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H24|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H26|A Chain A, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H26|B Chain B, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2A|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2A|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2C|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2C|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2E|A Chain A, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2E|B Chain B, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2F|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2F|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2M|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2M|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2N|A Chain A, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2N|B Chain B, Structural Studies Of Pterin-based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2O|A Chain A, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3H2O|B Chain B, Structural Studies Of Pterin-Based Inhibitors Of
Dihydropteroate Synthase
pdb|3TYA|A Chain A, Dihydropteroate Synthase In Complex With Product
pdb|3TYA|B Chain B, Dihydropteroate Synthase In Complex With Product
pdb|3TYB|A Chain A, Dihydropteroate Synthase In Complex With Phba And Dhp+
pdb|3TYB|B Chain B, Dihydropteroate Synthase In Complex With Phba And Dhp+
pdb|3TYC|A Chain A, Dihydropteroate Synthase In Complex With Dhp+
pdb|3TYC|B Chain B, Dihydropteroate Synthase In Complex With Dhp+
pdb|3TYD|A Chain A, Dihydropteroate Synthase In Complex With Ppi And Dhp+
pdb|3TYD|B Chain B, Dihydropteroate Synthase In Complex With Ppi And Dhp+
pdb|3TYE|A Chain A, Dihydropteroate Synthase In Complex With Dhp-Stz
pdb|3TYE|B Chain B, Dihydropteroate Synthase In Complex With Dhp-Stz
pdb|4D8Z|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 24
pdb|4D8Z|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 24
pdb|4D9P|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 17
pdb|4D9P|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 17
pdb|4DAI|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 23
pdb|4DAI|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 23
pdb|4DB7|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 25
pdb|4DB7|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 25
pdb|4D8A|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 21
pdb|4D8A|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 21
pdb|4DAF|A Chain A, Crystal Structure Of B. Anthracis Dhps With Compound 19
pdb|4DAF|B Chain B, Crystal Structure Of B. Anthracis Dhps With Compound 19
Length = 297
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 174/289 (60%), Gaps = 29/289 (10%)
Query: 202 NLLWDWSL-----------KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADM 250
++ WD+ L KT +MGILN+TPDSFSDGG + V+AAV + M EGA +
Sbjct: 20 HMKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHI 79
Query: 251 IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVGKG 309
IDIG +STRP K+S E+E++R++P+++AV E KL +S+DT+ ++VA +A+ G
Sbjct: 80 IDIGGESTRPGFAKVSVEEEIKRVVPMIQAV----SKEVKLPISIDTYKAEVAKQAIEAG 135
Query: 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369
AHI+ND+ + +P + +V A VP + MH N +N+ Y ++ + ++LY
Sbjct: 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMH---------NRDNMNYRNLMADMIADLYD 186
Query: 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEI 426
++ A+ +G+ II+DPG+GF+K E NL+ + L + P+L+G SRK F+G +
Sbjct: 187 SIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHV 246
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
+ P +ER T A++ G+ G VRVH++++ K+ D+M+ +
Sbjct: 247 LDLP-VEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 294
>pdb|3V5O|A Chain A, Structural And Mechanistic Studies Of Catalysis And Sulfa
Drug Resistance In Dihydropteroate Synthase
pdb|3V5O|B Chain B, Structural And Mechanistic Studies Of Catalysis And Sulfa
Drug Resistance In Dihydropteroate Synthase
Length = 297
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 174/289 (60%), Gaps = 29/289 (10%)
Query: 202 NLLWDWSL-----------KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADM 250
++ WD+ L KT +MGILN+TPDSFSDGG + V+AAV + M EGA +
Sbjct: 20 HMKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHI 79
Query: 251 IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVGKG 309
IDIG +STRP K+S E+E++R++P+++AV E KL +S+DT+ ++VA +A+ G
Sbjct: 80 IDIGGESTRPGFAKVSVEEEIKRVVPMIQAV----SKEVKLPISIDTYKAEVAKQAIEAG 135
Query: 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369
AHI+ND+ + +P + +V A VP + MH N +N+ Y ++ + ++LY
Sbjct: 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMH---------NRDNMNYRNLMADMIADLYD 186
Query: 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEI 426
++ A+ +G+ II++PG+GF+K E NL+ + L + P+L+G SRK F+G +
Sbjct: 187 SIKIAKDAGVRDENIILNPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHV 246
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475
+ P +ER T A++ G+ G VRVH++++ K+ D+M+ +
Sbjct: 247 LDLP-VEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 294
>pdb|1AJ0|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJ2|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJZ|A Chain A, Structure Of Dihydropteroate Pyrophosphorylase
Length = 282
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/270 (39%), Positives = 167/270 (61%), Gaps = 12/270 (4%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
VMGILN+TPDSFSDGG S+ AV LMI+ GA +ID+G +STRP A ++S E+EL+
Sbjct: 17 VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQ 76
Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
R+IPV+EA+ E+ +SVDT +V E+ GAHI+ND+ + +P + A
Sbjct: 77 RVIPVVEAIAQRFEV---WISVDTSKPEVIRESAKVGAHIINDIRSLS-EPGALEAAAET 132
Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
+P MHM+G+P TMQ E +YDDV +V ++ E +GI ++++DPG GF
Sbjct: 133 GLPVCLMHMQGNPKTMQ--EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190
Query: 393 SKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN-RPSADERDPATIASITAGVL 448
K HN +L LA H P+L+G SRK +G++ N PS ER ++A +
Sbjct: 191 GKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPS--ERLSGSLACAVIAAM 248
Query: 449 GGANIVRVHNIRDNLDAVKLCDSMLTRRKS 478
GA+I+RVH++++ ++A+++ ++ L+ +++
Sbjct: 249 QGAHIIRVHDVKETVEAMRVVEATLSAKEN 278
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 177/286 (61%), Gaps = 20/286 (6%)
Query: 197 VLPIGNLLW--DWSL---KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI 251
++P LW D +L + ++G+LNLTPDSFSDGG++ E A+ + R M++EGAD++
Sbjct: 10 IIPPVRTLWLRDRALDLDRVRLLGVLNLTPDSFSDGGRYLDPERALERAREMVAEGADIL 69
Query: 252 DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH 311
D+GA+STRP A + E+E RL+PVLEAVL++ G VSVDT +VA EA+ GAH
Sbjct: 70 DLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL----GVPVSVDTRKPEVAEEALKLGAH 125
Query: 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQYDDVCKQVASELYSK 370
++NDV+ G D M + A V V MHM DP+TM + +Y DV +V + L ++
Sbjct: 126 LLNDVT-GLRDERMVALAARHGVAAVVMHMPVPDPATMMA--HARYRDVVAEVKAFLEAQ 182
Query: 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPILIGPSRKRFLGEI 426
R A +G+P ++++DPG GF K EHNL +L L A H P+L+G SRKR +GE+
Sbjct: 183 ARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGH-PVLVGLSRKRTIGEL 239
Query: 427 CNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
+R ++A+ V+ G ++RVH++R + +A+ + +++
Sbjct: 240 SGVEDPAQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEAL 285
>pdb|1AD1|A Chain A, Dihydropteroate Synthetase (Apo Form) From Staphylococcus
Aureus
pdb|1AD1|B Chain B, Dihydropteroate Synthetase (Apo Form) From Staphylococcus
Aureus
pdb|1AD4|A Chain A, Dihydropteroate Synthetase Complexed With Oh-Ch2-Pterin-
Pyrophosphate From Staphylococcus Aureus
pdb|1AD4|B Chain B, Dihydropteroate Synthetase Complexed With Oh-Ch2-Pterin-
Pyrophosphate From Staphylococcus Aureus
Length = 266
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 156/265 (58%), Gaps = 17/265 (6%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
KT +MGILN+TPDSFSDGGKF +VE+AV++V+ M+ EGAD+ID+G STRP I+ E+
Sbjct: 2 KTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEE 61
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
EL R++PV+EA++ +SVDTF S+VA + G I+ND AG D M++VV
Sbjct: 62 ELNRVLPVVEAIVGFDVK----ISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVV 117
Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
A V MH N + + V +++ + L ++ A+++GIP+ +I +DPG
Sbjct: 118 AKYDAEIVLMH---------NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 168
Query: 390 LGFSKKAEHNLDILL---GLAASHAPILIGPSRKRFLGEICNRPSAD-ERDPATIASITA 445
+GF+K +++ L A+ P+L+ SRKRF E+ + ERD T A+
Sbjct: 169 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 228
Query: 446 GVLGGANIVRVHNIRDNLDAVKLCD 470
G++ G VRVHN+ N K D
Sbjct: 229 GIMKGVRAVRVHNVELNAKLAKGID 253
>pdb|4HB7|A Chain A, The Structure Of Dihydropteroate Synthase From
Staphylococcus Aureus Subsp. Aureus Mu50.
pdb|4HB7|B Chain B, The Structure Of Dihydropteroate Synthase From
Staphylococcus Aureus Subsp. Aureus Mu50
Length = 270
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 155/265 (58%), Gaps = 17/265 (6%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
KT +MGILN+TPDSFSDGGKF +VE A+++V+ MI EGAD+ID+G STRP ++ E+
Sbjct: 6 KTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEE 65
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
EL R++PV+EA++ +SVDTF S+VA + G ++ND AG D M+++V
Sbjct: 66 ELNRVLPVVEAIVGFDVK----ISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIV 121
Query: 330 AGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389
A + MH N + + V +++ + L ++ A+++GIP+ +I +DPG
Sbjct: 122 AKYDAEIILMH---------NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 172
Query: 390 LGFSKKAEHNLDILL---GLAASHAPILIGPSRKRFLGEICNRPSAD-ERDPATIASITA 445
+GF+K +++ L A+ P+L+ SRKRF E+ + ERD T A+
Sbjct: 173 IGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAY 232
Query: 446 GVLGGANIVRVHNIRDNLDAVKLCD 470
G++ G VRVHN+ N K D
Sbjct: 233 GIMKGVRAVRVHNVELNAKLAKGID 257
>pdb|1EYE|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of
6-Hydroxymethyl-7,8- Dihydropteroate Synthase (Dhps)
From Mycobacterium Tuberculosis In Complex With
6-Hydroxymethylpterin Monophosphate
Length = 280
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 160/269 (59%), Gaps = 13/269 (4%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
VMG+LN+T DSFSDGG + ++ AV M + GA ++D+G +S+RP AT++ E
Sbjct: 8 VMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETS 67
Query: 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGL 332
R+IPV++ + +G VS+DT + VA A+ GA +VNDVS G+ DP M ++A
Sbjct: 68 RVIPVVKELAA----QGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEA 123
Query: 333 KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392
VP+V MH R S ++Y +V +V ++L + V DA +G+ R+++DPGLGF
Sbjct: 124 DVPWVLMHWRA-VSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182
Query: 393 SKKAEHNLDILLG---LAASHAPILIGPSRKRFLGEICNRPSA-----DERDPATIASIT 444
+K A+HN IL L A+ P+L+G SRKRFLG + P D RD AT
Sbjct: 183 AKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISA 242
Query: 445 AGVLGGANIVRVHNIRDNLDAVKLCDSML 473
L GA VRVH++R ++DA+K+ ++ +
Sbjct: 243 LAALHGAWGVRVHDVRASVDAIKVVEAWM 271
>pdb|3TYU|A Chain A, Crystal Structure Of Dihydropteroate Synthetase With
Product1
pdb|3TYU|B Chain B, Crystal Structure Of Dihydropteroate Synthetase With
Product1
pdb|3TYZ|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthetase With Substrate Transition State Complex.
pdb|3TYZ|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthetase With Substrate Transition State Complex.
pdb|3TZF|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase With Sulfonamide Drug Complex.
pdb|3TZF|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase With Sulfonamide Drug Complex.
pdb|3TZN|A Chain A, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase.
pdb|3TZN|B Chain B, Crystal Structure Of The Yersinia Pestis Dihydropteroate
Synthase
Length = 280
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 160/272 (58%), Gaps = 11/272 (4%)
Query: 203 LLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA 262
L D S + VMGILN+TPDSFSDGG +++ A+ + M+S GA +IDIG +STRP A
Sbjct: 11 LTLDLS-RPQVMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGA 69
Query: 263 TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD 322
++S ++EL+R++PV+EA+ ++ +SVDT + V +E+ GAH++ND+ + Q +
Sbjct: 70 AEVSEQEELDRVVPVVEALAQRFDV---WLSVDTSKAAVITESAHAGAHLINDIRSLQ-E 125
Query: 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382
P + A +P MHM+G P MQ+ YDD+ + + +GI
Sbjct: 126 PGALEAAAKTGLPVCLMHMQGQPKNMQHSP--YYDDLMTDINRFFQHHIERCVAAGIAKN 183
Query: 383 RIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICNRPSADERDPAT 439
++++DPG GF K HN +L L+ H P+L+G SRK +G++ N P +R +
Sbjct: 184 KLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLLNVPP-QQRVIGS 242
Query: 440 IASITAGVLGGANIVRVHNIRDNLDAVKLCDS 471
+A + GA I+RVH++++ ++A+ + ++
Sbjct: 243 VACAVIAAMQGAQIIRVHDVKETVEAMCIVEA 274
>pdb|2Y5J|A Chain A, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase.
pdb|2Y5S|A Chain A, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase Complexed With
7,8-Dihydropteroate.
pdb|2Y5S|B Chain B, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase Complexed With
7,8-Dihydropteroate
Length = 294
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 149/271 (54%), Gaps = 19/271 (7%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
VMGILN TPDSFSDGG+F + + A+ + MI+EGAD++DIG +STRP A + ++EL
Sbjct: 25 VMGILNATPDSFSDGGRFLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELA 84
Query: 273 RLIPVLEAV--LTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA 330
R+IP++EA+ L +P +S+DT+ V A+ GA ++ND+ G P V
Sbjct: 85 RVIPLVEALRPLNVP------LSIDTYKPAVMRAALAAGADLINDIW-GFRQPGAIDAVR 137
Query: 331 GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390
AMHM G+P TMQ E Y DV V L ++ + +G+ A RI +DPG
Sbjct: 138 DGNSGLCAMHMLGEPQTMQVGEP-DYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGF 196
Query: 391 GFSKK-AEHNLDILLGLAASHA--------PILIGPSRKRFLGEICNRPSADERDPATIA 441
GF K + N +L L + PIL G SRK LG + ER A++A
Sbjct: 197 GFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGGKPPLERVAASVA 256
Query: 442 SITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
+ V GA IVRVH++ +DA+ + +++
Sbjct: 257 AALCAVERGAAIVRVHDVAATVDALSVWNAV 287
>pdb|3MCM|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCM|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCN|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|A Chain A, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
pdb|3MCO|B Chain B, Crystal Structure Of The 6-Hyroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Dihydropteroate Synthase Bifunctional
Enzyme From Francisella Tularensis
Length = 442
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 180/369 (48%), Gaps = 37/369 (10%)
Query: 48 IAMGSNVGDRLCNFNEALQ-LMKKLGVNITRHGCLYETEPAYVTDQP-----RFLNSAVR 101
I +G+N G + N + A+ L + + I R LY ++ D P RFLN+AV+
Sbjct: 26 IGIGTNSGFTIENIHLAITALESQQNIRIIRKASLYSSKAVLKEDAPKEWDIRFLNTAVK 85
Query: 102 GVTKLGPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIW 160
+ L P ELL +LK IE +GR N PR IDLDIL + +D LT+PH+ +
Sbjct: 86 ISSSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAAEDLILETDKLTIPHKELI 145
Query: 161 ERPFVVAPLLDLLG-----SSVESDTKLGGESLIGKEGMKRVLPIGNLLWDWSLKTSVMG 215
R F +APLL+L VE D + + L +K+ L T MG
Sbjct: 146 NRSFALAPLLELSKGWHHPKYVEWDLNIRLKELGEIVKLKQTLA----------NTIRMG 195
Query: 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275
I+NL+ SFSDG F + ++ + +I GA++IDIGA+ST+P A IS E+E +L
Sbjct: 196 IVNLSNQSFSDGN-FDDNQRKLN-LDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLN 253
Query: 276 PVLEAVLTMPE--MEGKLVSVDTFYSKVASEAVGKGAHI---VNDVSAGQLDPDMYKVVA 330
LE + + LVS+DT +V + + K I +NDV ++ +++A
Sbjct: 254 EFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECNNIEQKA-QLIA 312
Query: 331 GLKVPYVAMHMRG--DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388
YV +H G D + ++EN D+VC + + ++ GI I D
Sbjct: 313 KYNKKYVIIHNLGITDRNQYLDKEN-AIDNVCDYIEQKKQILLK----HGIAQQNIYFDI 367
Query: 389 GLGFSKKAE 397
G GF KK++
Sbjct: 368 GFGFGKKSD 376
>pdb|2VEF|A Chain A, Dihydropteroate Synthase From Streptococcus Pneumoniae
pdb|2VEF|B Chain B, Dihydropteroate Synthase From Streptococcus Pneumoniae
pdb|2VEG|A Chain A, Dihydropteroate Synthase From Streptococcus Pneumoniae:
Complex With 6-Hydroxymethyl-7,8-Dihydropterin
Monophosphate
pdb|2VEG|B Chain B, Dihydropteroate Synthase From Streptococcus Pneumoniae:
Complex With 6-Hydroxymethyl-7,8-Dihydropterin
Monophosphate
Length = 314
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 156/294 (53%), Gaps = 34/294 (11%)
Query: 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK 269
KT + GI+N+TPDSFSDGG+F ++E A+ Q R +I+EGA M+DIG +STRP ++ + E+
Sbjct: 9 KTVICGIINVTPDSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEE 68
Query: 270 ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVV 329
E++R++PV++A+ ++ L+S+DT+ S+VA A+ GA +VND++ D M VV
Sbjct: 69 EIQRVVPVIKAIRKESDV---LISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVV 125
Query: 330 AGLKVPYV-----AMHMRGDPSTM-----------QNEENLQYDDVCKQVASELY--SKV 371
A + V M PS++ EE ++ + + E + +
Sbjct: 126 AEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERAL 185
Query: 372 RDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHA---PILIGPSRKRFLGEICN 428
A +GI I++DPG+GF + NL +L L H PI +G SRKRF+ I
Sbjct: 186 ARAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINILE 245
Query: 429 R------PSAD----ERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSM 472
P + RD A+ + G +VRVH++ + AV++ ++
Sbjct: 246 ENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVHDVASHRMAVEIASAI 299
>pdb|3TR9|A Chain A, Structure Of A Dihydropteroate Synthase (Folp) In Complex
With Pteroic Acid From Coxiella Burnetii
pdb|3TR9|B Chain B, Structure Of A Dihydropteroate Synthase (Folp) In Complex
With Pteroic Acid From Coxiella Burnetii
pdb|3TR9|C Chain C, Structure Of A Dihydropteroate Synthase (Folp) In Complex
With Pteroic Acid From Coxiella Burnetii
pdb|3TR9|D Chain D, Structure Of A Dihydropteroate Synthase (Folp) In Complex
With Pteroic Acid From Coxiella Burnetii
Length = 314
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 20/268 (7%)
Query: 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM----ATKISA 267
+V GI+N++P+SF + +A+ + EGAD++DIG ++T P S
Sbjct: 29 AVXGIINVSPNSFYH--PHLDLNSALRTAEKXVDEGADILDIGGEATNPFVDIKTDSPST 86
Query: 268 EKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYK 327
+ EL+RL+PV++A+ + +L+SVDT +V EAV GA +ND A QLD D
Sbjct: 87 QIELDRLLPVIDAI---KKRFPQLISVDTSRPRVXREAVNTGADXINDQRALQLD-DALT 142
Query: 328 VVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387
V+ LK P H PS + + + + V EL ++ + +GI RIIID
Sbjct: 143 TVSALKTPVCLXHF---PSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIID 199
Query: 388 PGLG---FSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIA 441
PG G + K N +L L A P+L G SRK +G++ N+P + R +IA
Sbjct: 200 PGFGQGNYGKNVSENFYLLNKLPEFVAXGLPVLSGWSRKSXIGDVLNQP-PENRLFGSIA 258
Query: 442 SITAGVLGGANIVRVHNIRDNLDAVKLC 469
+ V GA+I+R H+++ +A+K+
Sbjct: 259 ADVLAVYHGASIIRTHDVKATREAIKIA 286
>pdb|3QBC|A Chain A, Structure And Design Of A New Pterin Site Inhibitor Of S.
Aureus Hppk
pdb|3QBC|B Chain B, Structure And Design Of A New Pterin Site Inhibitor Of S.
Aureus Hppk
pdb|4AD6|A Chain A, Synthesis And Sar Of Guanine Based Analogues For Hppk
Inhibitors
pdb|4AD6|B Chain B, Synthesis And Sar Of Guanine Based Analogues For Hppk
Inhibitors
Length = 161
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
+ +GSN+GDR N+A++++ + G++++ +YET P T+QP FLN V T L
Sbjct: 9 LGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTL 68
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
+LL K E+ + R R GPR +D+DIL YG I L+VPH R+ ER FV+
Sbjct: 69 TVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVL 128
Query: 167 APLLDLLGSSVESDTKLGGESLI 189
PL D+ + VE +KL + L+
Sbjct: 129 IPLNDIAANVVEPRSKLKVKDLV 151
>pdb|2QX0|A Chain A, Crystal Structure Of Yersinia Pestis Hppk (Ternary
Complex)
pdb|2QX0|B Chain B, Crystal Structure Of Yersinia Pestis Hppk (Ternary
Complex)
Length = 159
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLGVN-ITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L + A + + L + + LY T+P DQP FLN+ V T L
Sbjct: 6 IALGSNLAMPLQQVSAAREALAHLPRSRLVAXSPLYRTKPLGPQDQPDFLNAVVALDTSL 65
Query: 107 GPHELLGVLKKIEKDMGRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P +LL + IE++ GR R GPR +DLDI+ YG I +D LT+PH + R F+
Sbjct: 66 PPEQLLDHTQAIERNQGRVRKEQRWGPRTLDLDIMLYGDQVIKTDRLTIPHYGLKAREFM 125
Query: 166 VAPLLDLLGSSVESDTKLGGESLIGKEGMKRVLPIGNLLW 205
+ PL D+ + D GESL E +KRV G +LW
Sbjct: 126 LYPLADIAPDLIFPD----GESL--SECLKRVDKNGLVLW 159
>pdb|2CG8|A Chain A, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|B Chain B, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|C Chain C, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|D Chain D, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
Length = 270
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLG 107
IA+GSN+GD+ N +A+ ++ G++I + + TEP +Q F N V T L
Sbjct: 124 IALGSNMGDKQANLKQAIDKLRARGIHILKESSVLATEPWGGVEQDSFANQVVEVETWLP 183
Query: 108 PHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVA 167
+LL L IE ++GR + GPR IDLD+LF +++D L +PH I ER FV+
Sbjct: 184 AQDLLETLLAIESELGRVREVHWGPRLIDLDLLFVEDQILYTDDLILPHPYIAERLFVLE 243
Query: 168 PLLDL 172
L ++
Sbjct: 244 SLQEI 248
>pdb|1CBK|A Chain A, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
pdb|1CBK|B Chain B, 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinase From
Haemophilus Influenzae
Length = 160
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ + + AL+ + +L ++ Y+++P DQP ++N+ + T+L
Sbjct: 6 IALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETEL 65
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
P +LL L++IE + GR R G R +DLDIL YG I ++ LT+PH + R FV+
Sbjct: 66 SPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVI 125
Query: 167 APLLDLLGSSVESDTKLGGE 186
PL ++ V ++++ E
Sbjct: 126 VPLFEIASDLVLPNSQIITE 145
>pdb|1TMJ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45
Angstrom Resolution
pdb|1TMM|A Chain A, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
pdb|1TMM|B Chain B, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
Length = 158
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|1DY3|A Chain A, Ternary Complex Of 7,8-Dihydro-6-
Hydroxymethylpterinpyrophosphokinase From Escherichia
Coli With Atp And A Substrate Analogue.
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
pdb|1Q0N|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1RAO|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Hppk
With Amp And 6-Hydroxymethylpterin-Diphosphate At 1.56
Angstrom Resolution
pdb|1RB0|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli Hppk With
6-Hydroxymethylpterin-Diphosphate At 1.35 Angstrom
Resolution
pdb|2F63|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analogs Ampcpp And Hp-1
pdb|2F65|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analog Ampcpp
pdb|1HKA|A Chain A, 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|3IP0|A Chain A, Crystal Structure Of E. Coli Hppk In Complx With Mgampcpp
And 6-Hydroxymethylpterin6-Carboxypterin
pdb|3UD5|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1a
pdb|3UDE|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1b
pdb|3UDV|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1c
pdb|4F7V|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1d (Hp26)
Length = 158
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3HSD|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSD|B Chain B, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSG|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a) In Complex With
Mgampcpp
Length = 158
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDALNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3KUE|A Chain A, Crystal Structure Of E. Coli Hppk(E77a)
Length = 158
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++I GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIALQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3HD2|A Chain A, Crystal Structure Of E. Coli Hppk(Q50a) In Complex With
Mgam Pterin
Length = 158
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P D P +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|1HQ2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(R82a) With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1IM6|A Chain A, Crystal Structure Of Unligated Hppk(R82a) From E.Coli At
1.74 Angstrom Resolution
Length = 158
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE G R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGAVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|1F9H|A Chain A, Crystal Structure Of The Ternary Complex Of E. Coli
Hppk(R92a) With Mgampcpp And 6-Hydroxymethyl-7,8-
Dihydropterin At 1.50 Angstrom Resolution
pdb|1G4C|A Chain A, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1G4C|B Chain B, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1KBR|A Chain A, Crystal Structure Of Unligated Hppk(R92a) From E.Coli At
1.55 Angstrom Resolution
Length = 158
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GP +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|1RTZ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(V83gDEL84-89) At 1.33
Angstrom Resolution
pdb|1RU1|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU1|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Hppk(V83gDEL84-89) With Mgampcpp And
6-Hydroxymethyl-7,8- Dihydropterin At 1.40 Angstrom
Resolution (Monoclinic Form)
pdb|1RU2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(V83gDEL84-89) With Mgampcpp And 6-
Hydroxymethylpterin At 1.48 Angstrom Resolution
(Orthorhombic Form)
Length = 152
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVV 166
P ELL ++IE GR GPR +DLDI+ +G I+++ LTVPH + R F++
Sbjct: 65 APEELLNHTQRIELQQGRG-----GPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFML 119
Query: 167 APLLDLLGSSVESDTKL 183
PL ++ V D ++
Sbjct: 120 WPLFEIAPELVFPDGEM 136
>pdb|3HSJ|A Chain A, Crystal Structure Of E. Coli Hppk(N55a)
Length = 158
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +L +AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLAAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3HCX|A Chain A, Crystal Structure Of E. Coli Hppk(N10a)
pdb|3HD1|A Chain A, Crystal Structure Of E. Coli Hppk(N10a) In Complex With
Mgam
Length = 158
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GS + L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSALASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3ILL|A Chain A, Crystal Structure Of E. Coli Hppk(D97a)
pdb|3ILO|A Chain A, Crystal Structure Of E. Coli Hppk(D97a) In Complex With
Mgampcpp And 6-Hydroxymethyl-7,8-Dihydropterin
Length = 158
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DL I+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLAIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3ILI|A Chain A, Crystal Structure Of E. Coli Hppk(D95a)
pdb|3ILJ|A Chain A, Crystal Structure Of E. Coli Hppk(D95a) In Complex With
Mgampcpp
Length = 158
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR + LDI+ +G I+++ LTVPH + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLALDIMLFGNEVINTERLTVPHYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3HSZ|A Chain A, Crystal Structure Of E. Coli Hppk(F123a)
pdb|3HT0|A Chain A, Crystal Structure Of E. Coli Hppk(F123a) In Complex With
Mgampcpp
Length = 158
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVPH + R +
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGAM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|3KUG|A Chain A, Crystal Structure Of E. Coli Hppk(H115a)
pdb|3KUH|A Chain A, Crystal Structure Of E. Coli Hppk(H115a) In Complex With
Ampcpp And Hp
Length = 158
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 48 IAMGSNVGDRLCNFNEALQLMKKLG-VNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKL 106
IA+GSN+ L N AL+ + + +I Y T P DQP +LN+AV T L
Sbjct: 5 IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSL 64
Query: 107 GPHELLGVLKKIEKDMGRT-NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFV 165
P ELL ++IE GR R GPR +DLDI+ +G I+++ LTVP + R F+
Sbjct: 65 APEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPAYDMKNRGFM 124
Query: 166 VAPLLDLLGSSVESDTKL 183
+ PL ++ V D ++
Sbjct: 125 LWPLFEIAPELVFPDGEM 142
>pdb|2VP8|A Chain A, Structure Of Mycobacterium Tuberculosis Rv1207
pdb|2VP8|B Chain B, Structure Of Mycobacterium Tuberculosis Rv1207
Length = 318
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 12/220 (5%)
Query: 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272
+M I+N TPDSF D G S AA V +++GAD+ID+G P ++ + E+
Sbjct: 44 IMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGP-GERVDVDTEIT 102
Query: 273 RLIPVLEAVL-TMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAG 331
RL+P +E + P+ +L+SVDT+ ++VA A GA ++ND + G +DP M +V A
Sbjct: 103 RLVPFIEWLRGAYPD---QLISVDTWRAQVAKAACAAGADLIND-TWGGVDPAMPEVAAE 158
Query: 332 LKVPYVAMHMRGD-PST--MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388
V H G P T + V V S++ + A +G+ +++IDP
Sbjct: 159 FGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDP 218
Query: 389 GLGFSKKAEHNLDIL---LGLAASHAPILIGPSRKRFLGE 425
F K H L +L L + P+L+ S K +GE
Sbjct: 219 AHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGE 258
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 202 NLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM 261
+LW LK M + D G +QS+E AV +L + G +D+ + +
Sbjct: 47 EILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLH 106
Query: 262 ATKISAEKEL----ERLIPVLEAVLTMPEMEGKL 291
+ EK+L ERL L+ ++T +ME L
Sbjct: 107 VAILEREKQLRSEFERL-ECLQRIVTKLQMEAGL 139
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 202 NLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPM 261
+LW LK M + D G +QS+E AV +L + G +D+ + +
Sbjct: 47 EILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLH 106
Query: 262 ATKISAEKELERLIPVLEA---VLTMPEMEGKLVS 293
+ EK+L LEA ++T +ME L
Sbjct: 107 VAILEREKQLRSEFERLEALQRIVTKLQMEAGLAE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,398,238
Number of Sequences: 62578
Number of extensions: 549582
Number of successful extensions: 1420
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 37
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)