Query 038230
Match_columns 480
No_of_seqs 265 out of 2435
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2544 Dihydropteroate syntha 100.0 2E-111 4E-116 856.6 35.8 436 41-476 248-710 (711)
2 PRK11613 folP dihydropteroate 100.0 9.3E-78 2E-82 598.8 32.7 272 198-477 3-277 (282)
3 PRK13753 dihydropteroate synth 100.0 2E-76 4.2E-81 586.4 31.2 259 211-475 2-266 (279)
4 cd00739 DHPS DHPS subgroup of 100.0 2.2E-72 4.8E-77 556.2 30.2 254 211-470 1-257 (257)
5 TIGR01496 DHPS dihydropteroate 100.0 6.8E-70 1.5E-74 538.7 30.0 254 212-472 1-257 (257)
6 cd00423 Pterin_binding Pterin 100.0 6.6E-65 1.4E-69 503.8 29.9 253 211-469 1-257 (258)
7 COG0294 FolP Dihydropteroate s 100.0 9.2E-60 2E-64 469.4 28.9 261 207-476 4-268 (274)
8 PF00809 Pterin_bind: Pterin b 100.0 1.2E-52 2.6E-57 404.3 18.9 204 216-424 1-210 (210)
9 COG0801 FolK 7,8-dihydro-6-hyd 100.0 6.4E-45 1.4E-49 332.4 12.8 138 43-180 1-139 (160)
10 PRK07535 methyltetrahydrofolat 100.0 5.2E-42 1.1E-46 340.2 24.5 231 213-475 3-247 (261)
11 PRK14092 2-amino-4-hydroxy-6-h 100.0 6.1E-43 1.3E-47 322.6 13.9 140 40-180 4-144 (163)
12 PRK10239 2-amino-4-hydroxy-6-h 100.0 9.1E-43 2E-47 320.4 13.9 137 44-180 2-140 (159)
13 cd00740 MeTr MeTr subgroup of 100.0 6.8E-42 1.5E-46 337.8 20.2 219 212-459 2-242 (252)
14 TIGR01498 folK 2-amino-4-hydro 100.0 3E-42 6.5E-47 306.7 12.0 127 46-172 1-127 (127)
15 cd00483 HPPK 7,8-dihydro-6-hyd 100.0 2.3E-41 5E-46 301.8 11.4 127 46-172 1-128 (128)
16 TIGR00284 dihydropteroate synt 100.0 2.2E-39 4.9E-44 344.9 28.1 229 198-475 138-377 (499)
17 PF01288 HPPK: 7,8-dihydro-6-h 100.0 2.4E-40 5.1E-45 294.9 11.5 126 47-172 1-127 (127)
18 TIGR02082 metH 5-methyltetrahy 100.0 4.3E-35 9.3E-40 337.9 21.0 235 206-467 338-596 (1178)
19 PRK09490 metH B12-dependent me 100.0 1.8E-31 3.9E-36 307.2 19.5 227 208-458 356-604 (1229)
20 PRK04165 acetyl-CoA decarbonyl 99.9 2.4E-24 5.1E-29 227.1 23.7 209 207-474 88-316 (450)
21 COG1410 MetH Methionine syntha 99.9 4.3E-21 9.4E-26 206.7 15.6 223 207-458 25-266 (842)
22 PRK04452 acetyl-CoA decarbonyl 99.8 4.3E-18 9.4E-23 172.5 19.9 238 207-474 44-314 (319)
23 PRK00979 tetrahydromethanopter 99.8 2.9E-17 6.2E-22 164.8 23.5 242 195-474 8-287 (308)
24 TIGR00381 cdhD CO dehydrogenas 99.5 4.6E-13 1E-17 137.6 21.1 234 208-474 109-375 (389)
25 COG1456 CdhE CO dehydrogenase/ 99.3 6.2E-11 1.3E-15 119.4 16.7 216 217-474 94-332 (467)
26 PF03599 CdhD: CO dehydrogenas 99.1 7.8E-10 1.7E-14 114.6 14.1 185 239-474 59-259 (386)
27 PF02007 MtrH: Tetrahydrometha 98.8 6E-07 1.3E-11 89.6 18.5 248 195-474 3-285 (296)
28 PRK14047 putative methyltransf 98.5 1.6E-05 3.5E-10 79.7 19.5 247 195-473 8-289 (310)
29 TIGR01114 mtrH N5-methyltetrah 98.4 3.4E-05 7.5E-10 77.6 19.2 248 195-473 8-292 (314)
30 COG2069 CdhD CO dehydrogenase/ 98.0 0.00012 2.7E-09 73.1 13.4 194 235-458 151-370 (403)
31 cd04724 Tryptophan_synthase_al 98.0 0.00041 8.8E-09 68.6 17.2 156 230-417 10-194 (242)
32 TIGR03217 4OH_2_O_val_ald 4-hy 97.9 0.0023 5E-08 66.3 20.9 199 216-457 5-220 (333)
33 PRK02048 4-hydroxy-3-methylbut 97.8 0.0082 1.8E-07 65.8 24.3 237 195-472 11-287 (611)
34 PF04551 GcpE: GcpE protein; 97.8 0.003 6.6E-08 65.2 20.0 234 198-472 4-259 (359)
35 cd07943 DRE_TIM_HOA 4-hydroxy- 97.8 0.0041 8.8E-08 62.1 20.5 199 216-457 3-217 (263)
36 PRK08195 4-hyroxy-2-oxovalerat 97.8 0.0044 9.6E-08 64.3 21.2 197 216-457 6-221 (337)
37 cd07939 DRE_TIM_NifV Streptomy 97.7 0.0026 5.7E-08 63.4 18.7 189 218-457 3-214 (259)
38 PRK00366 ispG 4-hydroxy-3-meth 97.7 0.012 2.5E-07 61.0 23.4 233 195-472 12-259 (360)
39 cd07940 DRE_TIM_IPMS 2-isoprop 97.6 0.0042 9.2E-08 62.2 18.7 192 218-457 3-221 (268)
40 PRK13111 trpA tryptophan synth 97.6 0.0018 4E-08 64.7 15.8 109 230-341 22-150 (258)
41 PLN02925 4-hydroxy-3-methylbut 97.6 0.025 5.4E-07 63.1 24.5 237 196-471 81-355 (733)
42 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.5 0.0038 8.3E-08 62.9 16.8 152 228-406 15-187 (275)
43 TIGR00612 ispG_gcpE 1-hydroxy- 97.5 0.051 1.1E-06 55.9 24.3 232 196-472 5-250 (346)
44 TIGR02660 nifV_homocitr homoci 97.5 0.01 2.2E-07 62.2 20.0 192 217-456 5-216 (365)
45 cd07944 DRE_TIM_HOA_like 4-hyd 97.5 0.011 2.4E-07 59.3 19.3 185 229-457 15-215 (266)
46 PRK11858 aksA trans-homoaconit 97.5 0.011 2.3E-07 62.4 19.9 193 214-456 5-219 (378)
47 PF04481 DUF561: Protein of un 97.5 0.0057 1.2E-07 59.1 15.8 80 231-332 24-112 (242)
48 cd03174 DRE_TIM_metallolyase D 97.4 0.012 2.6E-07 58.0 18.0 194 222-457 7-222 (265)
49 PLN02591 tryptophan synthase 97.4 0.0017 3.8E-08 64.6 11.7 108 230-341 12-139 (250)
50 PRK13397 3-deoxy-7-phosphohept 97.4 0.038 8.2E-07 55.0 21.0 186 231-458 26-222 (250)
51 TIGR00262 trpA tryptophan synt 97.4 0.024 5.1E-07 56.7 19.7 109 230-341 20-148 (256)
52 PRK00694 4-hydroxy-3-methylbut 97.3 0.096 2.1E-06 57.4 24.8 238 195-472 15-291 (606)
53 CHL00200 trpA tryptophan synth 97.3 0.0035 7.6E-08 62.9 13.2 109 230-342 25-153 (263)
54 TIGR01361 DAHP_synth_Bsub phos 97.3 0.036 7.7E-07 55.6 20.2 185 231-458 36-232 (260)
55 TIGR02090 LEU1_arch isopropylm 97.2 0.045 9.7E-07 57.4 20.1 194 216-457 3-216 (363)
56 PRK05692 hydroxymethylglutaryl 97.1 0.098 2.1E-06 53.2 21.5 198 216-454 7-228 (287)
57 PRK13396 3-deoxy-7-phosphohept 97.1 0.17 3.7E-06 52.9 23.5 187 230-458 111-309 (352)
58 PRK12331 oxaloacetate decarbox 97.1 0.039 8.5E-07 59.4 19.0 200 216-457 6-229 (448)
59 cd07938 DRE_TIM_HMGL 3-hydroxy 97.1 0.052 1.1E-06 54.7 18.9 194 222-456 8-224 (274)
60 PF00290 Trp_syntA: Tryptophan 97.1 0.018 3.8E-07 57.8 15.1 172 209-417 8-205 (259)
61 COG0159 TrpA Tryptophan syntha 97.0 0.044 9.6E-07 54.9 17.4 109 230-341 27-155 (265)
62 PRK14041 oxaloacetate decarbox 97.0 0.042 9.1E-07 59.5 18.3 202 216-458 5-229 (467)
63 COG2089 SpsE Sialic acid synth 97.0 0.19 4.1E-06 51.6 21.7 209 198-457 2-235 (347)
64 PRK13125 trpA tryptophan synth 97.0 0.12 2.5E-06 51.2 20.0 108 230-341 14-137 (244)
65 PRK13398 3-deoxy-7-phosphohept 96.9 0.25 5.5E-06 49.7 22.0 185 231-458 38-234 (266)
66 PRK14040 oxaloacetate decarbox 96.9 0.074 1.6E-06 59.3 19.3 190 228-458 21-231 (593)
67 PRK09282 pyruvate carboxylase 96.9 0.057 1.2E-06 60.2 18.3 201 216-457 6-229 (592)
68 PRK12595 bifunctional 3-deoxy- 96.8 0.83 1.8E-05 48.0 25.8 186 231-458 129-325 (360)
69 PF00682 HMGL-like: HMGL-like 96.8 0.076 1.6E-06 51.8 16.7 182 228-457 8-213 (237)
70 cd07941 DRE_TIM_LeuA3 Desulfob 96.8 0.12 2.7E-06 51.9 18.6 187 222-456 8-226 (273)
71 TIGR03128 RuMP_HxlA 3-hexulose 96.8 0.033 7.1E-07 53.2 13.9 121 231-391 9-137 (206)
72 cd07945 DRE_TIM_CMS Leptospira 96.6 0.29 6.4E-06 49.5 20.2 193 222-456 7-222 (280)
73 cd07948 DRE_TIM_HCS Saccharomy 96.6 0.19 4.1E-06 50.5 18.3 193 216-458 3-217 (262)
74 PRK08673 3-deoxy-7-phosphohept 96.6 1.2 2.5E-05 46.4 24.9 187 231-458 104-300 (335)
75 TIGR01108 oadA oxaloacetate de 96.6 0.17 3.6E-06 56.4 19.4 191 227-458 14-225 (582)
76 TIGR03586 PseI pseudaminic aci 96.6 0.46 9.9E-06 49.3 21.3 185 231-458 14-223 (327)
77 PLN03228 methylthioalkylmalate 96.6 0.16 3.5E-06 55.5 18.9 203 214-457 85-318 (503)
78 PLN02746 hydroxymethylglutaryl 96.5 0.35 7.5E-06 50.6 20.3 167 213-406 46-235 (347)
79 COG1962 MtrH Tetrahydromethano 96.5 0.08 1.7E-06 52.2 14.4 246 195-474 11-293 (313)
80 PRK12330 oxaloacetate decarbox 96.5 0.14 2.9E-06 56.0 17.8 191 227-458 20-233 (499)
81 TIGR03569 NeuB_NnaB N-acetylne 96.5 1.1 2.3E-05 46.6 23.6 187 231-458 13-224 (329)
82 PRK12581 oxaloacetate decarbox 96.5 0.16 3.6E-06 54.9 18.0 186 231-457 32-238 (468)
83 cd04726 KGPDC_HPS 3-Keto-L-gul 96.4 0.047 1E-06 51.7 12.3 146 231-416 10-164 (202)
84 TIGR01769 GGGP geranylgeranylg 96.3 0.11 2.4E-06 50.3 14.3 157 234-417 11-183 (205)
85 PRK00915 2-isopropylmalate syn 96.3 0.55 1.2E-05 51.6 21.0 151 222-406 14-187 (513)
86 PRK05718 keto-hydroxyglutarate 96.2 0.049 1.1E-06 53.0 11.3 97 211-337 15-112 (212)
87 COG0821 gcpE 1-hydroxy-2-methy 96.2 1.1 2.5E-05 46.2 21.1 207 230-472 32-248 (361)
88 PRK09389 (R)-citramalate synth 95.9 0.98 2.1E-05 49.4 20.6 159 222-413 12-189 (488)
89 cd00958 DhnA Class I fructose- 95.8 0.66 1.4E-05 45.2 17.3 137 211-380 57-209 (235)
90 PRK07094 biotin synthase; Prov 95.7 0.78 1.7E-05 46.9 17.9 108 209-328 35-157 (323)
91 TIGR01362 KDO8P_synth 3-deoxy- 95.6 2.7 5.9E-05 42.0 21.0 193 231-458 13-224 (258)
92 PRK05198 2-dehydro-3-deoxyphos 95.4 3.3 7.2E-05 41.6 20.7 193 231-458 21-232 (264)
93 PLN03033 2-dehydro-3-deoxyphos 95.4 3.5 7.7E-05 41.8 21.6 195 231-458 27-243 (290)
94 PF03437 BtpA: BtpA family; I 95.4 2.2 4.7E-05 42.8 19.1 124 213-340 5-145 (254)
95 PRK12999 pyruvate carboxylase; 95.3 0.84 1.8E-05 54.8 18.8 208 216-458 535-767 (1146)
96 cd00452 KDPG_aldolase KDPG and 95.3 1.9 4.2E-05 40.8 17.8 98 211-338 4-102 (190)
97 cd00465 URO-D_CIMS_like The UR 95.3 1.2 2.5E-05 45.0 17.3 153 234-404 144-301 (306)
98 TIGR00973 leuA_bact 2-isopropy 94.9 2 4.4E-05 47.0 19.0 150 224-406 13-184 (494)
99 PRK14042 pyruvate carboxylase 94.9 1.6 3.5E-05 48.9 18.2 193 231-458 23-230 (596)
100 TIGR01182 eda Entner-Doudoroff 94.8 0.37 8E-06 46.7 11.5 98 211-338 8-106 (204)
101 COG0800 Eda 2-keto-3-deoxy-6-p 94.7 0.19 4.2E-06 48.7 9.3 89 230-337 21-110 (211)
102 PRK02412 aroD 3-dehydroquinate 94.6 2.5 5.5E-05 42.1 17.3 171 200-414 6-201 (253)
103 TIGR00977 LeuA_rel 2-isopropyl 94.6 4.2 9.2E-05 44.9 20.5 152 223-406 12-192 (526)
104 PLN02389 biotin synthase 94.6 2.7 6E-05 44.4 18.4 97 210-314 79-193 (379)
105 PRK09240 thiH thiamine biosynt 94.6 1.6 3.5E-05 45.9 16.6 159 209-406 70-241 (371)
106 PRK06015 keto-hydroxyglutarate 94.4 0.52 1.1E-05 45.5 11.5 98 211-338 4-102 (201)
107 TIGR02351 thiH thiazole biosyn 94.4 1.4 3.1E-05 46.2 15.7 159 209-406 69-240 (366)
108 PRK01130 N-acetylmannosamine-6 94.2 2.3 5E-05 41.1 15.7 139 227-416 16-179 (221)
109 PRK07114 keto-hydroxyglutarate 94.2 0.66 1.4E-05 45.5 11.8 103 210-338 14-117 (222)
110 cd04740 DHOD_1B_like Dihydroor 94.2 0.24 5.1E-06 50.2 9.1 79 232-313 100-183 (296)
111 PLN02321 2-isopropylmalate syn 94.2 3.3 7.2E-05 46.7 18.7 202 214-456 87-318 (632)
112 PRK07028 bifunctional hexulose 94.2 1.1 2.4E-05 48.0 14.6 145 231-415 13-167 (430)
113 cd04727 pdxS PdxS is a subunit 94.1 0.24 5.1E-06 50.1 8.5 73 212-316 67-139 (283)
114 PRK12344 putative alpha-isopro 94.0 11 0.00023 41.8 21.9 153 228-413 21-204 (524)
115 COG0269 SgbH 3-hexulose-6-phos 93.9 1.6 3.5E-05 42.6 13.6 147 230-415 12-169 (217)
116 PRK06252 methylcobalamin:coenz 93.9 3.7 8E-05 42.2 17.4 148 236-405 182-331 (339)
117 TIGR00222 panB 3-methyl-2-oxob 93.8 2.1 4.5E-05 43.1 14.7 160 240-414 28-199 (263)
118 PF04131 NanE: Putative N-acet 93.6 0.47 1E-05 45.3 9.2 86 212-316 34-119 (192)
119 cd03465 URO-D_like The URO-D _ 93.5 3.7 7.9E-05 41.8 16.5 154 234-404 168-325 (330)
120 PRK06256 biotin synthase; Vali 93.5 2.1 4.5E-05 44.1 14.6 78 229-314 89-167 (336)
121 PF01081 Aldolase: KDPG and KH 93.2 0.36 7.7E-06 46.5 7.8 88 232-338 18-106 (196)
122 PRK15108 biotin synthase; Prov 93.1 3.2 6.8E-05 43.3 15.4 134 229-406 74-209 (345)
123 TIGR00343 pyridoxal 5'-phospha 93.0 0.52 1.1E-05 47.7 8.9 72 212-315 69-140 (287)
124 PF01487 DHquinase_I: Type I 3 93.0 1.2 2.6E-05 43.2 11.4 150 231-414 7-178 (224)
125 COG2876 AroA 3-deoxy-D-arabino 92.9 4.2 9E-05 40.9 15.0 185 231-458 56-252 (286)
126 TIGR01037 pyrD_sub1_fam dihydr 92.9 0.48 1.1E-05 48.0 8.9 64 231-297 100-165 (300)
127 TIGR00190 thiC thiamine biosyn 92.9 4.4 9.6E-05 42.9 15.8 200 230-470 136-350 (423)
128 cd07947 DRE_TIM_Re_CS Clostrid 92.9 12 0.00026 37.9 19.7 191 227-457 15-235 (279)
129 TIGR00423 radical SAM domain p 92.8 2.2 4.8E-05 43.6 13.6 85 229-325 34-133 (309)
130 PRK06552 keto-hydroxyglutarate 92.8 1.4 3.1E-05 42.9 11.5 100 211-338 13-114 (213)
131 cd02810 DHOD_DHPD_FMN Dihydroo 92.8 0.56 1.2E-05 47.2 9.0 61 232-296 109-169 (289)
132 cd00331 IGPS Indole-3-glycerol 92.6 3 6.6E-05 40.1 13.5 110 211-338 11-126 (217)
133 cd06557 KPHMT-like Ketopantoat 92.5 3.6 7.8E-05 41.2 14.1 155 240-414 25-197 (254)
134 PF13714 PEP_mutase: Phosphoen 92.5 3.5 7.5E-05 40.9 13.9 106 231-341 82-199 (238)
135 PRK04180 pyridoxal biosynthesi 92.3 4 8.7E-05 41.5 14.2 63 237-316 86-148 (293)
136 PLN02274 inosine-5'-monophosph 92.2 1.1 2.3E-05 49.3 10.9 92 234-338 247-356 (505)
137 PRK13307 bifunctional formalde 92.2 7.5 0.00016 41.4 16.8 95 231-341 182-285 (391)
138 COG1830 FbaB DhnA-type fructos 92.2 4.1 8.8E-05 41.0 13.9 124 218-380 89-232 (265)
139 PTZ00413 lipoate synthase; Pro 92.1 6.3 0.00014 41.8 15.8 161 211-413 152-326 (398)
140 PRK11815 tRNA-dihydrouridine s 92.0 0.91 2E-05 47.1 9.7 84 231-318 74-172 (333)
141 PF04481 DUF561: Protein of un 92.0 0.51 1.1E-05 46.0 7.1 58 222-281 91-178 (242)
142 PRK10415 tRNA-dihydrouridine s 91.8 1.6 3.5E-05 45.0 11.1 105 231-339 74-200 (321)
143 COG5016 Pyruvate/oxaloacetate 91.8 2 4.3E-05 45.6 11.6 202 222-457 11-231 (472)
144 TIGR03249 KdgD 5-dehydro-4-deo 91.7 4.6 0.0001 41.0 14.3 116 217-341 12-138 (296)
145 TIGR01463 mtaA_cmuA methyltran 91.7 8.9 0.00019 39.5 16.6 148 234-405 180-333 (340)
146 PRK07259 dihydroorotate dehydr 91.7 0.86 1.9E-05 46.3 8.9 77 232-313 102-186 (301)
147 cd00377 ICL_PEPM Members of th 91.6 1.9 4E-05 42.8 11.0 107 230-342 80-205 (243)
148 COG0502 BioB Biotin synthase a 91.6 1.7 3.7E-05 45.2 10.9 132 210-349 47-208 (335)
149 TIGR00259 thylakoid_BtpA membr 91.5 17 0.00037 36.6 19.5 181 213-417 4-207 (257)
150 cd00717 URO-D Uroporphyrinogen 91.2 9.4 0.0002 39.3 16.1 151 234-405 177-331 (335)
151 PF03102 NeuB: NeuB family; I 91.2 1.9 4.1E-05 42.8 10.5 143 269-457 56-201 (241)
152 PRK00311 panB 3-methyl-2-oxobu 91.1 9.1 0.0002 38.6 15.4 155 240-414 28-200 (264)
153 cd03307 Mta_CmuA_like MtaA_Cmu 91.0 11 0.00024 38.6 16.4 148 235-404 172-321 (326)
154 TIGR00742 yjbN tRNA dihydrouri 91.0 1.6 3.5E-05 45.0 10.1 86 231-320 64-164 (318)
155 cd02801 DUS_like_FMN Dihydrour 90.9 1.1 2.5E-05 43.1 8.6 80 232-314 65-156 (231)
156 PRK03620 5-dehydro-4-deoxygluc 90.8 6.5 0.00014 40.1 14.4 117 217-342 14-141 (303)
157 PRK13209 L-xylulose 5-phosphat 90.8 13 0.00027 37.0 16.2 22 232-256 22-43 (283)
158 PRK09613 thiH thiamine biosynt 90.8 7.1 0.00015 42.6 15.2 160 210-406 81-258 (469)
159 COG1902 NemA NADH:flavin oxido 90.7 1.9 4.2E-05 45.3 10.6 109 217-332 221-334 (363)
160 cd02940 DHPD_FMN Dihydropyrimi 90.7 1.2 2.6E-05 45.3 8.9 78 232-312 111-196 (299)
161 TIGR02313 HpaI-NOT-DapA 2,4-di 90.6 6.1 0.00013 40.2 13.8 114 219-341 9-135 (294)
162 PRK12331 oxaloacetate decarbox 90.6 9.4 0.0002 41.4 15.9 75 230-316 150-229 (448)
163 TIGR01302 IMP_dehydrog inosine 90.5 2.1 4.5E-05 46.3 11.0 67 234-313 223-290 (450)
164 cd04732 HisA HisA. Phosphorib 90.5 6.2 0.00014 38.1 13.4 159 234-416 29-196 (234)
165 PRK13352 thiamine biosynthesis 90.4 7.8 0.00017 41.3 14.5 184 231-455 140-326 (431)
166 TIGR03572 WbuZ glycosyl amidat 90.4 7.1 0.00015 37.9 13.7 162 235-416 31-203 (232)
167 PLN02433 uroporphyrinogen deca 90.3 9.5 0.00021 39.6 15.3 156 234-414 179-342 (345)
168 COG0434 SgcQ Predicted TIM-bar 90.3 21 0.00045 35.6 18.4 185 209-417 6-212 (263)
169 PLN02424 ketopantoate hydroxym 90.3 14 0.0003 38.4 16.0 139 240-390 48-204 (332)
170 TIGR03551 F420_cofH 7,8-dideme 90.3 5.7 0.00012 41.2 13.6 76 230-315 69-157 (343)
171 PRK08318 dihydropyrimidine deh 90.2 1.3 2.8E-05 47.2 9.0 84 232-318 111-205 (420)
172 cd00951 KDGDH 5-dehydro-4-deox 90.2 8.4 0.00018 39.0 14.4 115 218-341 8-133 (289)
173 cd04733 OYE_like_2_FMN Old yel 90.2 4.4 9.6E-05 41.9 12.7 85 233-319 148-258 (338)
174 cd04729 NanE N-acetylmannosami 90.1 12 0.00025 36.2 14.8 90 226-338 19-128 (219)
175 PRK05481 lipoyl synthase; Prov 90.1 7.4 0.00016 39.6 13.9 142 229-411 78-225 (289)
176 COG0119 LeuA Isopropylmalate/h 90.0 17 0.00037 39.0 17.1 145 228-406 18-184 (409)
177 PLN02417 dihydrodipicolinate s 90.0 6.5 0.00014 39.6 13.4 114 218-341 9-133 (280)
178 cd01299 Met_dep_hydrolase_A Me 89.8 3.8 8.2E-05 41.8 11.7 100 230-339 116-221 (342)
179 TIGR00737 nifR3_yhdG putative 89.5 1.3 2.8E-05 45.5 8.0 81 231-314 72-165 (319)
180 PRK14114 1-(5-phosphoribosyl)- 89.5 6.5 0.00014 39.0 12.6 148 235-416 31-194 (241)
181 PRK13210 putative L-xylulose 5 89.4 24 0.00051 34.9 17.0 25 230-257 15-39 (284)
182 PTZ00314 inosine-5'-monophosph 89.3 5.2 0.00011 43.9 12.9 91 235-338 241-349 (495)
183 cd02803 OYE_like_FMN_family Ol 89.3 1.9 4.2E-05 44.0 9.2 106 220-330 216-325 (327)
184 PRK04147 N-acetylneuraminate l 89.3 8.9 0.00019 38.8 13.8 115 218-341 11-138 (293)
185 PRK07565 dihydroorotate dehydr 89.2 2.7 5.8E-05 43.5 10.2 76 232-313 112-194 (334)
186 TIGR03700 mena_SCO4494 putativ 89.1 7.5 0.00016 40.5 13.5 46 231-284 79-124 (351)
187 TIGR01303 IMP_DH_rel_1 IMP deh 89.1 1.8 4E-05 47.1 9.1 68 234-314 224-292 (475)
188 cd00408 DHDPS-like Dihydrodipi 89.0 10 0.00022 37.8 14.0 115 218-341 5-131 (281)
189 COG0329 DapA Dihydrodipicolina 89.0 9.5 0.00021 39.0 13.8 116 218-341 12-138 (299)
190 cd02803 OYE_like_FMN_family Ol 88.9 8 0.00017 39.5 13.3 80 234-314 141-246 (327)
191 TIGR00007 phosphoribosylformim 88.8 4.6 9.9E-05 39.1 10.9 151 235-416 29-195 (230)
192 TIGR00542 hxl6Piso_put hexulos 88.6 26 0.00056 34.8 16.5 23 231-256 16-38 (279)
193 PRK07455 keto-hydroxyglutarate 88.5 22 0.00048 33.7 15.1 99 211-338 12-110 (187)
194 cd00954 NAL N-Acetylneuraminic 88.5 10 0.00022 38.3 13.6 115 218-341 8-136 (288)
195 cd02932 OYE_YqiM_FMN Old yello 88.4 6.6 0.00014 40.6 12.4 80 234-314 154-259 (336)
196 cd04739 DHOD_like Dihydroorota 88.3 4 8.7E-05 42.1 10.7 58 232-295 110-169 (325)
197 TIGR03699 mena_SCO4550 menaqui 88.3 7 0.00015 40.3 12.6 47 230-284 71-117 (340)
198 PRK13587 1-(5-phosphoribosyl)- 88.3 4.4 9.5E-05 39.9 10.5 147 236-416 33-198 (234)
199 cd03319 L-Ala-DL-Glu_epimerase 88.2 20 0.00043 36.5 15.7 143 232-416 134-285 (316)
200 PRK12928 lipoyl synthase; Prov 88.2 7.8 0.00017 39.5 12.5 141 230-411 86-233 (290)
201 PRK06843 inosine 5-monophospha 88.2 2.4 5.1E-05 45.3 9.0 67 235-314 153-220 (404)
202 PRK04326 methionine synthase; 87.8 19 0.00041 36.9 15.3 148 234-405 161-317 (330)
203 PRK13523 NADPH dehydrogenase N 87.8 2.7 5.8E-05 43.8 9.0 103 220-331 215-320 (337)
204 TIGR00510 lipA lipoate synthas 87.7 16 0.00034 37.6 14.4 143 230-413 90-238 (302)
205 cd04733 OYE_like_2_FMN Old yel 87.7 3.2 6.9E-05 43.0 9.5 106 217-330 223-336 (338)
206 TIGR00433 bioB biotin syntheta 87.7 32 0.0007 34.4 17.9 73 229-313 60-137 (296)
207 COG0042 tRNA-dihydrouridine sy 87.7 1.6 3.6E-05 45.1 7.3 92 231-342 76-174 (323)
208 PRK07807 inosine 5-monophospha 87.6 4.5 9.9E-05 44.2 11.0 91 234-338 226-335 (479)
209 TIGR01464 hemE uroporphyrinoge 87.6 21 0.00046 36.7 15.5 149 234-405 180-334 (338)
210 PRK14024 phosphoribosyl isomer 87.6 12 0.00026 36.8 13.2 153 235-416 33-196 (241)
211 TIGR01768 GGGP-family geranylg 87.6 12 0.00025 36.9 12.7 176 236-460 16-211 (223)
212 PRK08444 hypothetical protein; 87.5 7.4 0.00016 40.8 12.2 65 229-306 78-143 (353)
213 cd04723 HisA_HisF Phosphoribos 87.2 11 0.00024 36.9 12.5 148 235-416 36-195 (233)
214 PRK00115 hemE uroporphyrinogen 86.9 27 0.00059 36.2 15.9 150 234-405 186-339 (346)
215 PRK12755 phospho-2-dehydro-3-d 86.7 33 0.00071 36.1 16.1 178 231-424 65-308 (353)
216 PRK01130 N-acetylmannosamine-6 86.7 5.8 0.00013 38.3 10.2 65 238-314 79-144 (221)
217 TIGR02631 xylA_Arthro xylose i 86.6 47 0.001 35.2 17.9 166 221-406 21-204 (382)
218 cd04734 OYE_like_3_FMN Old yel 86.6 3.6 7.7E-05 42.9 9.2 106 220-332 216-331 (343)
219 PRK04169 geranylgeranylglycery 86.5 36 0.00077 33.7 19.0 172 241-459 26-215 (232)
220 TIGR00970 leuA_yeast 2-isoprop 86.4 33 0.00072 38.3 17.1 80 227-317 41-128 (564)
221 TIGR00674 dapA dihydrodipicoli 86.3 16 0.00034 36.8 13.5 114 219-341 7-132 (285)
222 cd02931 ER_like_FMN Enoate red 86.1 3.9 8.4E-05 43.3 9.3 104 224-332 244-351 (382)
223 TIGR01093 aroD 3-dehydroquinat 86.0 30 0.00065 33.7 14.8 151 231-414 9-183 (228)
224 KOG4175 Tryptophan synthase al 85.9 36 0.00078 33.1 15.0 109 230-341 28-156 (268)
225 cd00019 AP2Ec AP endonuclease 85.8 37 0.0008 33.7 15.7 153 231-415 10-175 (279)
226 cd03309 CmuC_like CmuC_like. P 85.8 40 0.00088 34.8 16.3 150 234-405 155-317 (321)
227 PRK05458 guanosine 5'-monophos 85.4 4.8 0.0001 41.8 9.3 67 235-314 97-166 (326)
228 cd00381 IMPDH IMPDH: The catal 85.3 4.4 9.6E-05 41.9 9.0 68 234-314 93-161 (325)
229 PRK12581 oxaloacetate decarbox 85.2 28 0.00061 38.0 15.3 74 230-315 159-237 (468)
230 PRK11320 prpB 2-methylisocitra 85.2 3 6.5E-05 42.6 7.6 36 216-255 152-187 (292)
231 cd04731 HisF The cyclase subun 85.2 22 0.00048 34.7 13.6 156 235-416 28-199 (243)
232 PRK03170 dihydrodipicolinate s 84.9 21 0.00046 35.9 13.7 114 219-341 10-135 (292)
233 PRK08508 biotin synthase; Prov 84.9 14 0.0003 37.2 12.3 100 230-337 39-154 (279)
234 cd02809 alpha_hydroxyacid_oxid 84.9 4.1 8.9E-05 41.5 8.5 71 232-314 127-198 (299)
235 cd02812 PcrB_like PcrB_like pr 84.9 20 0.00043 35.2 12.8 170 239-458 17-205 (219)
236 PLN02520 bifunctional 3-dehydr 84.8 15 0.00033 40.5 13.5 145 231-414 32-196 (529)
237 PLN02428 lipoic acid synthase 84.8 30 0.00064 36.4 14.8 143 230-412 129-277 (349)
238 cd04740 DHOD_1B_like Dihydroor 84.4 5.5 0.00012 40.2 9.1 82 234-318 166-262 (296)
239 PRK08227 autoinducer 2 aldolas 84.2 14 0.00031 37.2 11.8 120 241-398 101-231 (264)
240 PRK09261 phospho-2-dehydro-3-d 84.2 57 0.0012 34.3 16.4 178 231-423 64-306 (349)
241 PRK12457 2-dehydro-3-deoxyphos 84.1 52 0.0011 33.5 23.7 192 231-458 27-240 (281)
242 TIGR02317 prpB methylisocitrat 84.0 3.5 7.6E-05 42.0 7.5 36 216-255 147-182 (285)
243 COG3010 NanE Putative N-acetyl 83.9 33 0.00071 33.5 13.4 90 236-338 87-185 (229)
244 cd04735 OYE_like_4_FMN Old yel 83.9 5.2 0.00011 41.8 8.9 103 221-331 224-328 (353)
245 PRK07360 FO synthase subunit 2 83.8 18 0.00039 38.0 13.0 64 230-304 90-153 (371)
246 cd02930 DCR_FMN 2,4-dienoyl-Co 83.8 4.2 9.1E-05 42.4 8.2 95 231-332 221-322 (353)
247 PF00977 His_biosynth: Histidi 83.7 1.9 4.2E-05 42.2 5.4 149 236-416 31-197 (229)
248 PRK12738 kbaY tagatose-bisphos 83.7 18 0.00039 36.9 12.4 109 275-413 7-131 (286)
249 cd02933 OYE_like_FMN Old yello 83.5 7.5 0.00016 40.4 9.8 106 214-331 221-329 (338)
250 cd07942 DRE_TIM_LeuA Mycobacte 83.4 55 0.0012 33.3 16.9 73 227-311 16-92 (284)
251 TIGR00736 nifR3_rel_arch TIM-b 83.3 4.7 0.0001 39.8 7.9 59 230-296 76-141 (231)
252 TIGR01182 eda Entner-Doudoroff 83.3 15 0.00033 35.6 11.2 87 238-345 71-158 (204)
253 cd00945 Aldolase_Class_I Class 83.3 21 0.00046 32.8 12.0 102 231-340 62-179 (201)
254 PRK10550 tRNA-dihydrouridine s 83.2 12 0.00025 38.6 11.0 86 231-319 72-170 (312)
255 TIGR01949 AroFGH_arch predicte 82.9 48 0.001 32.9 15.1 138 210-380 70-222 (258)
256 PF01208 URO-D: Uroporphyrinog 82.9 5.2 0.00011 41.0 8.4 149 234-404 182-337 (343)
257 PRK11320 prpB 2-methylisocitra 82.8 24 0.00053 36.1 13.0 103 230-339 89-208 (292)
258 PRK13585 1-(5-phosphoribosyl)- 82.5 18 0.00038 35.3 11.6 155 236-416 34-199 (241)
259 cd02911 arch_FMN Archeal FMN-b 82.4 14 0.0003 36.4 10.7 99 231-338 82-196 (233)
260 cd00452 KDPG_aldolase KDPG and 82.3 23 0.0005 33.4 12.0 86 238-344 67-152 (190)
261 PRK01060 endonuclease IV; Prov 82.2 54 0.0012 32.4 15.1 138 233-406 14-168 (281)
262 COG1831 Predicted metal-depend 82.1 15 0.00032 37.2 10.7 36 234-273 107-142 (285)
263 PRK01261 aroD 3-dehydroquinate 81.8 56 0.0012 32.2 15.8 165 200-414 11-180 (229)
264 PRK08575 5-methyltetrahydropte 81.8 67 0.0015 33.2 16.1 123 247-393 173-302 (326)
265 KOG0623 Glutamine amidotransfe 81.6 4.7 0.0001 41.9 7.2 124 235-379 337-517 (541)
266 TIGR02320 PEP_mutase phosphoen 81.5 66 0.0014 32.8 15.9 106 231-340 89-218 (285)
267 TIGR01163 rpe ribulose-phospha 81.4 48 0.001 31.2 16.9 97 230-339 7-110 (210)
268 PRK12857 fructose-1,6-bisphosp 81.4 24 0.00052 35.9 12.3 110 274-413 6-131 (284)
269 cd00959 DeoC 2-deoxyribose-5-p 81.4 6.7 0.00015 37.6 8.0 105 223-338 60-179 (203)
270 TIGR02317 prpB methylisocitrat 81.3 45 0.00097 34.0 14.2 106 230-340 84-204 (285)
271 KOG0369 Pyruvate carboxylase [ 81.2 8.3 0.00018 43.4 9.3 95 226-331 709-813 (1176)
272 cd04730 NPD_like 2-Nitropropan 81.2 53 0.0012 31.6 15.0 98 289-416 57-162 (236)
273 cd03315 MLE_like Muconate lact 81.1 60 0.0013 32.1 16.5 145 232-416 85-237 (265)
274 COG0107 HisF Imidazoleglycerol 81.0 10 0.00022 37.6 8.9 160 235-415 31-204 (256)
275 cd03308 CmuA_CmuC_like CmuA_Cm 80.9 79 0.0017 33.3 16.8 147 234-404 214-373 (378)
276 TIGR01858 tag_bisphos_ald clas 80.7 70 0.0015 32.6 15.6 173 213-418 17-209 (282)
277 cd01321 ADGF Adenosine deamina 80.5 30 0.00064 36.1 13.0 112 271-405 178-304 (345)
278 PF14385 DUF4416: Domain of un 80.5 9.8 0.00021 35.7 8.4 87 44-143 5-103 (164)
279 PRK05567 inosine 5'-monophosph 80.4 42 0.00091 36.7 14.7 65 237-314 230-295 (486)
280 cd03316 MR_like Mandelate race 80.2 57 0.0012 33.7 15.1 100 232-338 139-245 (357)
281 COG0422 ThiC Thiamine biosynth 79.9 51 0.0011 35.0 14.0 185 229-454 136-323 (432)
282 cd00953 KDG_aldolase KDG (2-ke 79.8 16 0.00036 36.7 10.6 110 219-341 9-129 (279)
283 PRK12737 gatY tagatose-bisphos 79.8 28 0.00061 35.4 12.2 109 275-413 7-131 (284)
284 TIGR02319 CPEP_Pphonmut carbox 79.6 6.4 0.00014 40.3 7.5 36 216-255 151-186 (294)
285 PRK09284 thiamine biosynthesis 79.6 52 0.0011 36.5 14.5 198 230-470 291-503 (607)
286 TIGR03471 HpnJ hopanoid biosyn 79.4 59 0.0013 35.2 15.3 47 229-284 225-273 (472)
287 cd07941 DRE_TIM_LeuA3 Desulfob 79.3 14 0.00031 37.1 9.9 83 221-315 139-226 (273)
288 COG0407 HemE Uroporphyrinogen- 79.2 88 0.0019 32.9 15.9 150 233-403 188-341 (352)
289 cd00443 ADA_AMPD Adenosine/AMP 79.2 26 0.00055 35.7 11.9 140 232-405 121-271 (305)
290 PRK07107 inosine 5-monophospha 79.2 8.6 0.00019 42.3 8.8 72 231-314 238-310 (502)
291 TIGR01858 tag_bisphos_ald clas 79.1 30 0.00065 35.3 12.1 109 275-413 5-129 (282)
292 PF00701 DHDPS: Dihydrodipicol 79.1 15 0.00033 36.9 10.1 113 219-340 10-134 (289)
293 TIGR00735 hisF imidazoleglycer 79.0 42 0.00092 33.2 13.1 160 235-415 31-204 (254)
294 PRK06852 aldolase; Validated 79.0 44 0.00096 34.4 13.3 82 248-338 135-235 (304)
295 PLN02444 HMP-P synthase 78.9 40 0.00087 37.4 13.5 198 230-470 296-508 (642)
296 PRK08185 hypothetical protein; 78.8 29 0.00063 35.4 11.9 99 289-414 13-126 (283)
297 cd07938 DRE_TIM_HMGL 3-hydroxy 78.8 17 0.00037 36.6 10.3 79 226-316 142-225 (274)
298 PRK13586 1-(5-phosphoribosyl)- 78.5 50 0.0011 32.5 13.2 149 235-415 31-194 (232)
299 cd00947 TBP_aldolase_IIB Tagat 78.5 28 0.00062 35.3 11.7 107 277-413 4-126 (276)
300 COG2513 PrpB PEP phosphonomuta 78.4 34 0.00073 35.0 12.0 106 230-340 89-209 (289)
301 TIGR03572 WbuZ glycosyl amidat 78.3 17 0.00036 35.3 9.8 46 239-298 88-133 (232)
302 cd04729 NanE N-acetylmannosami 78.3 17 0.00037 35.0 9.8 65 238-314 83-148 (219)
303 PTZ00124 adenosine deaminase; 78.3 37 0.00081 35.7 12.9 111 272-405 206-327 (362)
304 cd02932 OYE_YqiM_FMN Old yello 78.3 14 0.0003 38.2 9.7 101 220-329 229-333 (336)
305 PRK10605 N-ethylmaleimide redu 78.2 19 0.00042 37.8 10.9 103 214-331 228-336 (362)
306 cd04722 TIM_phosphate_binding 78.0 33 0.00071 31.0 11.3 94 234-338 12-119 (200)
307 PRK04180 pyridoxal biosynthesi 78.0 46 0.001 34.1 12.9 116 292-457 20-148 (293)
308 TIGR01430 aden_deam adenosine 77.8 84 0.0018 32.0 15.2 107 275-404 175-289 (324)
309 PRK09250 fructose-bisphosphate 77.8 76 0.0016 33.4 14.7 65 241-314 153-235 (348)
310 PRK09195 gatY tagatose-bisphos 77.7 33 0.00071 35.0 11.9 109 275-413 7-131 (284)
311 cd04735 OYE_like_4_FMN Old yel 77.6 28 0.00062 36.3 11.9 83 235-318 145-256 (353)
312 cd00946 FBP_aldolase_IIA Class 77.6 39 0.00084 35.5 12.6 123 274-413 4-157 (345)
313 cd00950 DHDPS Dihydrodipicolin 77.5 52 0.0011 32.9 13.3 115 219-341 9-134 (284)
314 COG5016 Pyruvate/oxaloacetate 77.4 84 0.0018 33.8 14.9 83 230-324 152-243 (472)
315 PRK05927 hypothetical protein; 77.3 28 0.00061 36.4 11.7 137 230-406 75-226 (350)
316 PRK07259 dihydroorotate dehydr 77.2 9.1 0.0002 38.8 7.9 20 234-253 169-188 (301)
317 cd00502 DHQase_I Type I 3-dehy 77.2 73 0.0016 30.8 14.4 148 232-413 11-177 (225)
318 PRK07998 gatY putative fructos 77.1 36 0.00078 34.7 12.0 109 275-413 7-131 (283)
319 PRK12344 putative alpha-isopro 76.9 21 0.00046 39.5 11.1 86 218-316 143-233 (524)
320 PRK08445 hypothetical protein; 76.9 24 0.00052 36.9 11.0 58 231-300 73-130 (348)
321 PLN02495 oxidoreductase, actin 76.9 9.7 0.00021 40.5 8.1 81 232-317 125-218 (385)
322 TIGR00683 nanA N-acetylneurami 76.6 26 0.00057 35.5 11.0 114 219-341 9-136 (290)
323 TIGR00007 phosphoribosylformim 76.5 58 0.0013 31.4 13.0 67 238-318 85-169 (230)
324 COG2108 Uncharacterized conser 76.4 1E+02 0.0022 32.2 15.0 196 230-478 64-271 (353)
325 PLN02438 inositol-3-phosphate 76.3 22 0.00048 38.9 10.7 129 229-385 202-333 (510)
326 PRK09490 metH B12-dependent me 76.1 69 0.0015 39.2 15.7 159 220-405 146-326 (1229)
327 COG0646 MetH Methionine syntha 76.1 1E+02 0.0022 31.8 15.0 170 210-404 114-306 (311)
328 TIGR02320 PEP_mutase phosphoen 76.1 12 0.00026 38.1 8.3 36 216-254 154-189 (285)
329 TIGR02319 CPEP_Pphonmut carbox 75.8 87 0.0019 32.1 14.4 102 231-338 89-206 (294)
330 PF00793 DAHP_synth_1: DAHP sy 75.8 10 0.00022 38.3 7.6 194 231-459 27-238 (270)
331 cd08205 RuBisCO_IV_RLP Ribulos 75.6 72 0.0016 33.6 14.2 121 207-338 127-252 (367)
332 cd04734 OYE_like_3_FMN Old yel 75.5 40 0.00086 35.1 12.2 83 234-318 141-250 (343)
333 cd00429 RPE Ribulose-5-phospha 75.5 72 0.0016 29.9 14.5 99 231-340 9-112 (211)
334 TIGR02810 agaZ_gatZ D-tagatose 75.4 26 0.00056 37.5 10.7 94 290-392 14-128 (420)
335 PRK00278 trpC indole-3-glycero 75.4 40 0.00086 33.7 11.7 114 210-341 49-169 (260)
336 PRK14326 (dimethylallyl)adenos 75.4 61 0.0013 35.7 14.1 139 229-406 184-333 (502)
337 COG1646 Predicted phosphate-bi 75.3 91 0.002 31.0 16.2 196 234-472 28-237 (240)
338 PRK07226 fructose-bisphosphate 75.0 25 0.00054 35.2 10.2 118 234-380 93-226 (267)
339 PRK09140 2-dehydro-3-deoxy-6-p 75.0 41 0.00088 32.5 11.3 89 232-338 20-109 (206)
340 TIGR03128 RuMP_HxlA 3-hexulose 74.9 76 0.0016 29.9 14.4 60 239-314 68-131 (206)
341 PRK02412 aroD 3-dehydroquinate 74.8 45 0.00097 33.2 11.9 105 224-342 84-206 (253)
342 PRK15458 tagatose 6-phosphate 74.8 27 0.00058 37.5 10.6 94 290-392 18-132 (426)
343 cd06556 ICL_KPHMT Members of t 74.7 37 0.00081 33.7 11.2 93 228-341 83-199 (240)
344 cd00377 ICL_PEPM Members of th 74.7 9.5 0.00021 37.8 7.0 38 216-255 144-181 (243)
345 TIGR01579 MiaB-like-C MiaB-lik 74.6 48 0.001 35.2 12.8 140 229-406 165-314 (414)
346 PF01964 ThiC: ThiC family; I 74.4 30 0.00064 36.9 10.7 116 323-455 205-322 (420)
347 PRK06520 5-methyltetrahydropte 74.3 1.1E+02 0.0024 32.1 15.3 139 238-393 174-340 (368)
348 PRK06552 keto-hydroxyglutarate 74.3 52 0.0011 32.0 11.9 86 239-345 80-165 (213)
349 PRK14328 (dimethylallyl)adenos 74.3 55 0.0012 35.2 13.2 142 228-406 173-323 (439)
350 PRK09234 fbiC FO synthase; Rev 74.0 27 0.00059 40.9 11.5 58 230-299 556-613 (843)
351 cd04741 DHOD_1A_like Dihydroor 74.0 13 0.00028 37.8 8.0 57 233-294 102-162 (294)
352 cd00959 DeoC 2-deoxyribose-5-p 73.9 52 0.0011 31.4 11.7 77 369-457 73-151 (203)
353 PRK09997 hydroxypyruvate isome 73.8 25 0.00054 34.6 9.8 84 323-415 88-177 (258)
354 PRK07945 hypothetical protein; 73.6 6.8 0.00015 40.7 5.9 70 299-385 248-320 (335)
355 PRK08446 coproporphyrinogen II 73.6 1.2E+02 0.0026 31.5 15.8 131 234-405 34-173 (350)
356 TIGR00539 hemN_rel putative ox 73.6 1.2E+02 0.0026 31.6 16.6 119 248-405 52-175 (360)
357 PRK12330 oxaloacetate decarbox 73.6 22 0.00047 39.1 10.0 76 230-315 151-231 (499)
358 PRK08255 salicylyl-CoA 5-hydro 73.5 16 0.00036 42.1 9.6 114 213-335 620-737 (765)
359 PRK01033 imidazole glycerol ph 73.5 24 0.00052 35.1 9.6 45 239-297 88-132 (258)
360 PRK07709 fructose-bisphosphate 73.5 66 0.0014 32.8 12.8 109 275-413 7-134 (285)
361 PRK02506 dihydroorotate dehydr 73.3 14 0.0003 38.0 8.0 80 233-317 104-192 (310)
362 PRK12756 phospho-2-dehydro-3-d 73.3 1.3E+02 0.0027 31.7 16.4 180 231-425 63-306 (348)
363 PRK05301 pyrroloquinoline quin 73.3 1.2E+02 0.0027 31.6 15.6 129 227-388 42-190 (378)
364 PTZ00314 inosine-5'-monophosph 73.2 17 0.00036 40.0 9.1 70 238-314 294-371 (495)
365 TIGR03234 OH-pyruv-isom hydrox 73.2 23 0.00051 34.5 9.4 85 324-417 88-178 (254)
366 COG1891 Uncharacterized protei 73.1 42 0.00091 32.0 10.3 110 239-380 72-182 (235)
367 PRK00278 trpC indole-3-glycero 73.1 16 0.00035 36.5 8.3 61 239-314 125-185 (260)
368 PRK05567 inosine 5'-monophosph 73.0 15 0.00034 40.0 8.8 70 238-314 281-358 (486)
369 PRK14041 oxaloacetate decarbox 72.9 22 0.00047 38.8 9.8 75 230-316 149-228 (467)
370 cd04747 OYE_like_5_FMN Old yel 72.9 18 0.0004 38.0 9.0 90 231-331 232-343 (361)
371 PF08013 Tagatose_6_P_K: Tagat 72.8 18 0.00038 38.8 8.7 94 290-392 18-132 (424)
372 PRK00311 panB 3-methyl-2-oxobu 72.8 1.1E+02 0.0024 30.8 14.7 88 231-339 90-202 (264)
373 TIGR03151 enACPred_II putative 72.7 61 0.0013 33.2 12.6 105 277-415 53-166 (307)
374 cd00381 IMPDH IMPDH: The catal 72.6 19 0.00041 37.3 8.9 71 238-314 147-224 (325)
375 PRK15052 D-tagatose-1,6-bispho 72.6 29 0.00062 37.2 10.2 93 291-392 16-129 (421)
376 PRK09058 coproporphyrinogen II 72.4 1.4E+02 0.0031 32.2 15.9 119 248-405 115-238 (449)
377 PRK13523 NADPH dehydrogenase N 72.4 23 0.00051 36.8 9.5 57 235-294 143-212 (337)
378 TIGR03550 F420_cofG 7,8-dideme 72.3 49 0.0011 34.0 11.9 144 229-405 33-186 (322)
379 PRK02083 imidazole glycerol ph 72.1 62 0.0013 31.9 12.1 155 235-416 31-203 (253)
380 PRK15063 isocitrate lyase; Pro 72.0 1.3E+02 0.0028 32.6 15.0 160 231-406 158-364 (428)
381 TIGR00977 LeuA_rel 2-isopropyl 71.8 24 0.00051 39.1 9.9 198 219-453 140-348 (526)
382 PRK01033 imidazole glycerol ph 71.7 74 0.0016 31.6 12.6 157 235-416 31-202 (258)
383 PRK06052 5-methyltetrahydropte 71.6 1.4E+02 0.003 31.4 14.8 157 232-406 143-333 (344)
384 PRK05222 5-methyltetrahydropte 71.4 1.4E+02 0.0031 34.6 16.5 149 238-406 585-745 (758)
385 PRK12677 xylose isomerase; Pro 71.2 1.5E+02 0.0032 31.6 19.8 160 220-406 19-203 (384)
386 PLN02617 imidazole glycerol ph 71.1 27 0.00059 38.8 10.1 20 236-255 336-355 (538)
387 TIGR01235 pyruv_carbox pyruvat 71.1 1.2E+02 0.0026 36.9 16.2 193 231-458 550-765 (1143)
388 COG2513 PrpB PEP phosphonomuta 71.1 9.1 0.0002 39.0 5.9 49 216-277 152-200 (289)
389 TIGR01361 DAHP_synth_Bsub phos 70.9 32 0.0007 34.5 9.8 75 229-314 141-229 (260)
390 cd04732 HisA HisA. Phosphorib 70.9 95 0.0021 29.8 13.0 46 238-297 86-131 (234)
391 PF13714 PEP_mutase: Phosphoen 70.9 5.6 0.00012 39.4 4.3 49 216-275 139-187 (238)
392 cd03311 CIMS_C_terminal_like C 70.8 1.3E+02 0.0028 30.8 15.3 150 235-406 156-326 (332)
393 COG0620 MetE Methionine syntha 70.6 1.4E+02 0.003 31.1 15.0 147 239-406 163-320 (330)
394 PRK08255 salicylyl-CoA 5-hydro 70.5 29 0.00062 40.1 10.6 59 235-294 552-623 (765)
395 cd01320 ADA Adenosine deaminas 70.4 1.2E+02 0.0025 30.9 14.1 170 233-416 72-271 (325)
396 TIGR00167 cbbA ketose-bisphosp 70.4 80 0.0017 32.2 12.7 110 274-413 6-134 (288)
397 COG0167 PyrD Dihydroorotate de 70.4 21 0.00045 36.9 8.5 57 232-294 107-166 (310)
398 PRK14336 (dimethylallyl)adenos 70.3 76 0.0017 33.9 13.1 137 229-404 151-298 (418)
399 cd02931 ER_like_FMN Enoate red 70.2 66 0.0014 34.0 12.5 58 236-294 152-223 (382)
400 PRK13398 3-deoxy-7-phosphohept 70.2 38 0.00081 34.2 10.2 77 229-314 143-231 (266)
401 TIGR02082 metH 5-methyltetrahy 70.2 1.1E+02 0.0024 37.4 15.6 118 221-349 131-269 (1178)
402 PRK13585 1-(5-phosphoribosyl)- 70.1 32 0.0007 33.4 9.6 45 239-297 90-134 (241)
403 PRK14340 (dimethylallyl)adenos 70.1 93 0.002 33.6 13.8 140 229-406 176-327 (445)
404 PRK14338 (dimethylallyl)adenos 70.1 90 0.002 33.8 13.8 140 229-406 182-331 (459)
405 PRK09310 aroDE bifunctional 3- 69.9 62 0.0013 35.3 12.5 139 231-412 9-158 (477)
406 TIGR01037 pyrD_sub1_fam dihydr 69.8 38 0.00081 34.2 10.3 79 233-314 168-261 (300)
407 TIGR02660 nifV_homocitr homoci 69.6 34 0.00073 35.9 10.1 78 225-315 134-216 (365)
408 PRK08392 hypothetical protein; 69.6 12 0.00026 36.1 6.3 74 273-386 138-211 (215)
409 PF01261 AP_endonuc_2: Xylose 69.4 22 0.00048 32.8 7.9 85 323-414 74-162 (213)
410 PRK06267 hypothetical protein; 69.3 85 0.0018 32.7 13.0 61 230-302 62-123 (350)
411 TIGR01304 IMP_DH_rel_2 IMP deh 69.0 11 0.00024 39.8 6.3 72 234-314 142-214 (369)
412 PRK13306 ulaD 3-keto-L-gulonat 68.9 1.2E+02 0.0025 29.5 14.8 86 231-334 13-107 (216)
413 PRK12737 gatY tagatose-bisphos 68.9 1.4E+02 0.003 30.4 15.4 173 213-418 19-211 (284)
414 TIGR01211 ELP3 histone acetylt 68.8 1.5E+02 0.0033 32.9 15.3 155 230-406 114-281 (522)
415 PRK08649 inosine 5-monophospha 68.5 19 0.00041 38.0 7.9 71 234-313 141-212 (368)
416 TIGR01302 IMP_dehydrog inosine 68.5 25 0.00055 38.0 9.1 71 238-314 277-354 (450)
417 PRK06806 fructose-bisphosphate 68.5 95 0.0021 31.5 12.7 110 274-413 6-131 (281)
418 cd02929 TMADH_HD_FMN Trimethyl 68.0 24 0.00052 37.1 8.6 113 213-332 219-335 (370)
419 PRK00043 thiE thiamine-phospha 68.0 1.1E+02 0.0023 28.8 14.8 78 216-314 9-86 (212)
420 PRK14042 pyruvate carboxylase 67.9 32 0.00069 38.7 9.9 87 211-315 137-228 (596)
421 PRK09282 pyruvate carboxylase 67.9 31 0.00066 38.8 9.8 74 230-315 150-228 (592)
422 PLN02617 imidazole glycerol ph 67.7 21 0.00045 39.7 8.4 95 230-335 263-386 (538)
423 PRK05286 dihydroorotate dehydr 67.5 15 0.00033 38.2 6.9 49 232-284 155-204 (344)
424 PF03802 CitX: Apo-citrate lya 67.4 4.9 0.00011 37.8 3.0 93 44-155 27-131 (170)
425 PRK14339 (dimethylallyl)adenos 67.3 90 0.002 33.4 12.9 138 229-404 154-304 (420)
426 PF04476 DUF556: Protein of un 67.3 1.1E+02 0.0024 30.4 12.4 135 231-406 64-200 (235)
427 TIGR00034 aroFGH phospho-2-deh 67.1 1.6E+02 0.0035 30.9 14.1 177 231-423 59-300 (344)
428 smart00518 AP2Ec AP endonuclea 67.1 1.3E+02 0.0029 29.5 14.9 146 238-415 14-172 (273)
429 TIGR00222 panB 3-methyl-2-oxob 67.1 1.5E+02 0.0032 30.0 15.4 102 209-339 75-201 (263)
430 cd00945 Aldolase_Class_I Class 66.9 1E+02 0.0022 28.1 15.0 66 232-316 11-85 (201)
431 cd06557 KPHMT-like Ketopantoat 66.8 1E+02 0.0022 30.9 12.4 88 231-339 87-199 (254)
432 PRK09140 2-dehydro-3-deoxy-6-p 66.8 1.1E+02 0.0023 29.6 12.2 85 238-345 74-161 (206)
433 PRK14332 (dimethylallyl)adenos 66.5 1.7E+02 0.0038 31.6 15.0 144 229-412 181-333 (449)
434 PRK13957 indole-3-glycerol-pho 66.5 1.5E+02 0.0032 29.7 14.2 109 218-341 46-160 (247)
435 COG1856 Uncharacterized homolo 66.2 1.3E+02 0.0029 29.9 12.4 82 232-344 40-121 (275)
436 PRK06245 cofG FO synthase subu 65.7 1.5E+02 0.0032 30.5 13.8 28 230-257 40-68 (336)
437 PRK06801 hypothetical protein; 65.5 1.1E+02 0.0024 31.3 12.5 110 274-413 6-131 (286)
438 PRK00748 1-(5-phosphoribosyl)- 65.5 77 0.0017 30.5 11.1 85 239-338 88-195 (233)
439 PRK15452 putative protease; Pr 65.4 1.4E+02 0.003 32.5 13.9 119 238-390 14-144 (443)
440 PRK08610 fructose-bisphosphate 65.2 1.1E+02 0.0024 31.2 12.4 110 274-413 6-134 (286)
441 PRK02227 hypothetical protein; 65.1 1.5E+02 0.0032 29.6 12.9 135 231-406 64-200 (238)
442 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.0 48 0.001 33.3 9.8 73 231-315 146-223 (275)
443 PRK05458 guanosine 5'-monophos 65.0 20 0.00044 37.2 7.2 71 368-458 99-169 (326)
444 PLN02475 5-methyltetrahydropte 65.0 2.8E+02 0.006 32.4 18.5 151 238-406 590-751 (766)
445 cd04728 ThiG Thiazole synthase 64.9 21 0.00046 35.6 7.0 22 230-251 106-127 (248)
446 KOG3111 D-ribulose-5-phosphate 64.9 1.1E+02 0.0025 29.6 11.5 102 232-345 15-124 (224)
447 cd03174 DRE_TIM_metallolyase D 64.9 37 0.0008 33.2 8.8 76 237-314 77-164 (265)
448 PRK13361 molybdenum cofactor b 64.7 1.7E+02 0.0038 30.0 16.0 74 228-314 42-119 (329)
449 PRK14325 (dimethylallyl)adenos 64.7 73 0.0016 34.2 11.7 140 229-406 174-325 (444)
450 TIGR01108 oadA oxaloacetate de 64.4 27 0.00058 39.2 8.5 75 230-316 145-224 (582)
451 cd02930 DCR_FMN 2,4-dienoyl-Co 64.4 56 0.0012 34.0 10.5 59 234-293 137-208 (353)
452 PRK07315 fructose-bisphosphate 64.2 1.7E+02 0.0038 29.8 15.9 161 230-415 25-207 (293)
453 PRK09856 fructoselysine 3-epim 64.2 1.5E+02 0.0033 29.1 18.1 75 323-406 93-171 (275)
454 PRK07807 inosine 5-monophospha 64.0 21 0.00045 39.1 7.4 68 366-455 227-294 (479)
455 cd02933 OYE_like_FMN Old yello 63.9 95 0.002 32.3 12.0 105 234-339 152-291 (338)
456 TIGR02026 BchE magnesium-proto 63.9 2.3E+02 0.0049 31.0 15.7 137 229-406 220-362 (497)
457 PF03437 BtpA: BtpA family; I 63.8 46 0.001 33.4 9.2 99 334-457 3-110 (254)
458 PRK08599 coproporphyrinogen II 63.8 1.9E+02 0.0042 30.2 16.0 134 233-406 34-176 (377)
459 PRK05926 hypothetical protein; 63.6 1.3E+02 0.0028 31.8 13.0 79 208-299 61-154 (370)
460 PRK09358 adenosine deaminase; 63.2 87 0.0019 32.1 11.5 98 233-341 148-251 (340)
461 TIGR01502 B_methylAsp_ase meth 63.1 1E+02 0.0022 33.1 12.2 135 231-395 245-390 (408)
462 COG0821 gcpE 1-hydroxy-2-methy 62.9 58 0.0013 34.0 9.8 130 308-469 48-189 (361)
463 PRK06015 keto-hydroxyglutarate 62.7 99 0.0021 29.9 11.0 86 239-345 68-154 (201)
464 PRK14327 (dimethylallyl)adenos 62.5 1E+02 0.0022 34.0 12.5 139 229-406 239-391 (509)
465 PRK07534 methionine synthase I 62.4 2E+02 0.0044 29.9 17.9 164 210-405 104-291 (336)
466 TIGR02764 spore_ybaN_pdaB poly 62.4 1.3E+02 0.0029 27.9 13.1 123 238-380 49-183 (191)
467 TIGR01305 GMP_reduct_1 guanosi 62.3 41 0.00088 35.2 8.7 69 239-314 163-239 (343)
468 PRK07998 gatY putative fructos 62.3 1.8E+02 0.0038 29.7 13.2 114 239-388 89-230 (283)
469 COG1099 Predicted metal-depend 62.3 12 0.00027 36.8 4.7 47 324-388 118-164 (254)
470 COG1038 PycA Pyruvate carboxyl 62.2 53 0.0012 38.2 10.1 98 219-330 679-787 (1149)
471 cd00952 CHBPH_aldolase Trans-o 62.1 87 0.0019 32.0 11.2 105 231-341 26-143 (309)
472 TIGR01125 MiaB-like tRNA modif 62.0 1.4E+02 0.0031 31.8 13.3 139 229-404 162-309 (430)
473 TIGR01305 GMP_reduct_1 guanosi 62.0 26 0.00056 36.6 7.2 70 368-457 109-178 (343)
474 COG2875 CobM Precorrin-4 methy 61.9 36 0.00079 33.8 7.8 80 289-390 30-112 (254)
475 PRK14847 hypothetical protein; 61.8 41 0.00089 35.1 8.7 72 228-310 48-120 (333)
476 PRK13587 1-(5-phosphoribosyl)- 61.7 1.6E+02 0.0034 29.0 12.5 47 238-299 89-135 (234)
477 PRK12595 bifunctional 3-deoxy- 61.7 48 0.001 34.9 9.3 75 228-311 233-317 (360)
478 TIGR02151 IPP_isom_2 isopenten 61.6 29 0.00063 36.0 7.7 74 237-313 193-280 (333)
479 COG2159 Predicted metal-depend 61.1 1.4E+02 0.0031 30.3 12.5 119 210-387 97-223 (293)
480 PF01791 DeoC: DeoC/LacD famil 61.0 16 0.00034 35.8 5.3 97 237-339 79-199 (236)
481 TIGR02109 PQQ_syn_pqqE coenzym 60.9 2.1E+02 0.0045 29.5 15.3 127 229-388 35-181 (358)
482 TIGR01859 fruc_bis_ald_ fructo 60.6 1.4E+02 0.0031 30.3 12.2 110 274-413 4-131 (282)
483 TIGR01501 MthylAspMutase methy 60.5 30 0.00066 31.3 6.6 75 299-392 42-121 (134)
484 PRK14329 (dimethylallyl)adenos 60.5 1.7E+02 0.0036 31.9 13.6 147 228-406 194-349 (467)
485 TIGR00089 RNA modification enz 60.5 1.2E+02 0.0027 32.2 12.5 139 229-406 166-315 (429)
486 TIGR02321 Pphn_pyruv_hyd phosp 60.1 17 0.00037 37.1 5.6 50 216-276 151-200 (290)
487 TIGR01306 GMP_reduct_2 guanosi 59.9 29 0.00062 36.0 7.2 69 368-457 96-165 (321)
488 cd02811 IDI-2_FMN Isopentenyl- 59.6 51 0.0011 34.1 9.0 75 232-318 128-210 (326)
489 PF01207 Dus: Dihydrouridine s 59.6 12 0.00027 38.2 4.5 91 231-342 63-160 (309)
490 PRK14333 (dimethylallyl)adenos 59.5 1E+02 0.0022 33.2 11.8 142 229-405 175-330 (448)
491 PRK02083 imidazole glycerol ph 59.0 85 0.0019 30.9 10.2 87 239-339 88-203 (253)
492 PRK14040 oxaloacetate decarbox 58.9 85 0.0018 35.4 11.2 86 212-315 139-229 (593)
493 cd07943 DRE_TIM_HOA 4-hydroxy- 58.9 69 0.0015 31.8 9.6 74 231-316 138-217 (263)
494 PF02548 Pantoate_transf: Keto 58.8 27 0.00058 35.2 6.5 134 240-387 29-182 (261)
495 PF01884 PcrB: PcrB family; I 58.7 1.9E+02 0.0042 28.6 12.6 195 231-472 19-230 (230)
496 cd07945 DRE_TIM_CMS Leptospira 58.6 73 0.0016 32.2 9.8 82 224-317 138-224 (280)
497 PF00478 IMPDH: IMP dehydrogen 58.6 29 0.00062 36.5 7.0 68 368-457 110-177 (352)
498 PF05853 DUF849: Prokaryotic p 58.3 10 0.00022 38.3 3.5 61 231-297 23-83 (272)
499 PRK13397 3-deoxy-7-phosphohept 58.1 43 0.00093 33.5 7.8 75 228-311 130-214 (250)
500 PLN02858 fructose-bisphosphate 58.1 1.7E+02 0.0036 36.5 14.3 110 274-413 1102-1226(1378)
No 1
>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-111 Score=856.62 Aligned_cols=436 Identities=64% Similarity=1.040 Sum_probs=409.1
Q ss_pred ccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHH
Q 038230 41 SQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIE 119 (480)
Q Consensus 41 ~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE 119 (480)
.+..++||++|||+||+.+||+.|++.|.+. ++.+...|++|||+|+++.+||.|+|+++.++|.|+|.+||+.||.||
T Consensus 248 tqnk~a~lafGSNIGdrf~~iq~AL~~L~k~~gi~v~~~S~lyEtePmy~kDQp~FlNg~v~~eT~l~P~eLL~~ckkIE 327 (711)
T KOG2544|consen 248 TQNKRAFLAFGSNIGDRFNNIQEALQRLMKEKGIKVTRHSCLYETEPMYVKDQPRFLNGAVRGETKLTPHELLKVCKKIE 327 (711)
T ss_pred ccceeEEEEeccchhHHHHHHHHHHHHHHHhccEEEeeeccccccCCceecCCchhhcceEEEEeecCHHHHHHHHHHHH
Confidence 3456799999999999999999999888766 889999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCccc--c-----------ccccCC
Q 038230 120 KDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVES--D-----------TKLGGE 186 (480)
Q Consensus 120 ~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p--~-----------~~~~~~ 186 (480)
++|||.+..+||||+|||||++||+.++..+.|+|||+++|||.|||.||.||.++.+|+ . +.++++
T Consensus 328 ~emgR~k~i~~GPR~iDLDIv~yg~~~i~se~L~IPH~rl~ER~FVL~PL~~L~~~~vh~h~lt~~p~~l~qa~dkl~~e 407 (711)
T KOG2544|consen 328 EEMGRVKGIRYGPRPIDLDIVFYGKDIIVSEKLIIPHERLWERTFVLAPLVDLLGDVVHWHSLTAHPGGLFQAWDKLGGE 407 (711)
T ss_pred HHhhhhhccccCCCccceeEEEecceeeeeccccCCchhhhhchhhHHHHHHhcCccccccccccCchHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999976543 3 234444
Q ss_pred ccccccC-ccccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC
Q 038230 187 SLIGKEG-MKRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKI 265 (480)
Q Consensus 187 ~~~q~~~-i~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v 265 (480)
..+...+ +.|++++++..+++..++.+|||+|+|||||||||+|.+.+.++.+++.|+.+||+||||||+||||++.++
T Consensus 408 ~~l~~~Gv~~R~l~~gd~~~~~~n~t~vMgIlN~TPDSFSDGGkf~~ids~l~~v~smi~dga~IiDiGgqSTrP~a~~i 487 (711)
T KOG2544|consen 408 SLLGRDGVIQRVLPIGDTLWDFSNKTYVMGILNLTPDSFSDGGKFQSIDSALSRVRSMISDGADIIDIGGQSTRPMASRI 487 (711)
T ss_pred cccccCCceeEEeeccchhhhhcCcceEEEEEecCCcccCCCCccccHHHHHHHHHHHhcCCceEEeecCccCCCCcccc
Confidence 4443344 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCC
Q 038230 266 SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDP 345 (480)
Q Consensus 266 ~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p 345 (480)
|.+||++|+.|+|+++++......++||||||+.+|+++|+++||||||||+|+..|++|.+++++.++++++||++|+|
T Consensus 488 S~eEEirR~iP~ikavR~~~e~~~v~iSiDTy~S~VAkeAI~~GadIiNDvsgG~~D~nM~~vvAe~~vpy~imHmRGdp 567 (711)
T KOG2544|consen 488 SSEEEIRRLIPVIKAVRGMTEMPQVLISIDTYNSEVAKEAIKNGADIINDVSGGLLDENMHKVVAESEVPYMIMHMRGDP 567 (711)
T ss_pred chHHHHHHHhHHHHHHhcccccCceeEEEechhhHHHHHHHhccchheeccccccCchhhHHHHhhcCCCEEEEeccCCh
Confidence 99999999999999999765456799999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc------------ccCCCcE
Q 038230 346 STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL------------AASHAPI 413 (480)
Q Consensus 346 ~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l------------~~~g~Pi 413 (480)
.||+...++.|.++++++..++.+++++|...||++|+|++|||+||+|+..||+.++.++ .....|+
T Consensus 568 ~TM~~l~~ye~~di~kdVa~El~eRv~~A~~sGv~rw~ImiDPG~GFaKt~kqnl~ii~~lp~i~e~mak~~i~l~h~pi 647 (711)
T KOG2544|consen 568 CTMQNLENYEYFDICKDVAQELYERVRKAELSGVPRWRIMIDPGIGFAKTWKQNLDIIMHLPKIREEMAKVSINLSHAPI 647 (711)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHcCCcceEEEecCCcccccChhhhhhHhhhchhhHHHhcccceecccCce
Confidence 9999999999999999999999999999999999999999999999999999999999965 2348899
Q ss_pred EEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230 414 LIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476 (480)
Q Consensus 414 l~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~ 476 (480)
|+|.|||+|+|.++|.+++.+|+++|.|+.+.++..|++|+|||||+++.+++++++||++..
T Consensus 648 L~GPSRK~F~G~itgd~~akdRd~aT~A~Vta~Il~Ga~ivRVHdvk~~ska~kladAi~r~~ 710 (711)
T KOG2544|consen 648 LLGPSRKRFLGDITGDPEAKDRDAATVACVTAGILFGANIVRVHDVKNNSKAAKLADAIYRGL 710 (711)
T ss_pred eeCcccccccccccCCCChhhhcchhhhhhhhhhccCcceEEEeechhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999998653
No 2
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=100.00 E-value=9.3e-78 Score=598.77 Aligned_cols=272 Identities=38% Similarity=0.646 Sum_probs=256.0
Q ss_pred ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230 198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV 277 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v 277 (480)
+..+++.++++ +|.||||||+|||||||||+|.+.+.|+++|++|+++|||||||||+|||||+++|+++||++|+.|+
T Consensus 3 ~~~~~~~~~~~-~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pv 81 (282)
T PRK11613 3 LFAQGTTLDLS-HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPV 81 (282)
T ss_pred eeeCCcccCCC-CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHH
Confidence 34556667774 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230 278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD 357 (480)
Q Consensus 278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~ 357 (480)
|+.|++. .++||||||++|+|+++||++|++|||||+|+. +++|++++++|++++|+||++|.|++|+..+ .|+
T Consensus 82 I~~l~~~---~~~~ISIDT~~~~va~~AL~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~--~y~ 155 (282)
T PRK11613 82 VEAIAQR---FEVWISVDTSKPEVIRESAKAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAP--KYD 155 (282)
T ss_pred HHHHHhc---CCCeEEEECCCHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCC--Ccc
Confidence 9999975 389999999999999999999999999999986 7899999999999999999999999998754 578
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCc
Q 038230 358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADE 434 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~ 434 (480)
+++.++..+|+++++.|.++||++++||+|||+||+|+.+||+++|+++ +.+|+|+|+|+|||||||.++|.+ +++
T Consensus 156 dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg~SRKsfig~~~~~~-~~~ 234 (282)
T PRK11613 156 DVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSE 234 (282)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEecccHHHHhhcCCC-hhh
Confidence 9999999999999999999999999999999999999999999999998 568999999999999999999985 789
Q ss_pred ccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhhh
Q 038230 435 RDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRRK 477 (480)
Q Consensus 435 r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~~ 477 (480)
|+++|++++++|+.+||+|+|||||+++++|+++++++++.+.
T Consensus 235 r~~~T~a~~~~a~~~ga~iiRvHdV~~~~~a~~~~~~~~~~~~ 277 (282)
T PRK11613 235 RLSGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAKE 277 (282)
T ss_pred hhHHHHHHHHHHHHCCCCEEEcCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999976543
No 3
>PRK13753 dihydropteroate synthase; Provisional
Probab=100.00 E-value=2e-76 Score=586.39 Aligned_cols=259 Identities=31% Similarity=0.483 Sum_probs=241.8
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
+.||||||+|||||||||+|++.+.|+++|++|+++|||||||||+||||++++||++||++|+.|+|+.+++. ++
T Consensus 2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~----~~ 77 (279)
T PRK13753 2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ----MH 77 (279)
T ss_pred ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC----CC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999975 68
Q ss_pred eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
||||||++|+|+++||++||+|||||+|++ +++|+++++++++++|+||++|.|.++.......|++++.++..||+++
T Consensus 78 ~ISIDT~~~~va~~al~aGadiINDVsg~~-d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~ 156 (279)
T PRK13753 78 RVSIDSFQPETQRYALKRGVGYLNDIQGFP-DPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR 156 (279)
T ss_pred cEEEECCCHHHHHHHHHcCCCEEEeCCCCC-chHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 8999999999999999999987654332222345789999999999999
Q ss_pred HHHHHHCCCCCCCEEEecCCCC--ccChhHHHHHHHhc---c-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHH
Q 038230 371 VRDAELSGIPAWRIIIDPGLGF--SKKAEHNLDILLGL---A-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASIT 444 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDPgiGf--~k~~~~~~~~lr~l---~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~ 444 (480)
++.|.++||++++||+|||+|| +|+.+||+++|+++ + .+|+|+|+|+|||||||+++|.+ +++|+++|+++++
T Consensus 157 i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~~~-~~~R~~~T~a~~~ 235 (279)
T PRK13753 157 VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLP-VKDLGPASLAAEL 235 (279)
T ss_pred HHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcCCC-hhhhhHhHHHHHH
Confidence 9999999999999999999999 56999999999997 4 48999999999999999999975 6899999999999
Q ss_pred HHHHcCCcEEEcCChHHHHHHHHHHHHHHhh
Q 038230 445 AGVLGGANIVRVHNIRDNLDAVKLCDSMLTR 475 (480)
Q Consensus 445 ~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~ 475 (480)
+|+.+||+|+|||||+++++|+++++++++.
T Consensus 236 ~a~~~Ga~ivRvHdV~~~~~a~~~~~~~~~~ 266 (279)
T PRK13753 236 HAIGNGADYVRTHAPGDLRSAITFSETLAKF 266 (279)
T ss_pred HHHHcCCCEEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999753
No 4
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=100.00 E-value=2.2e-72 Score=556.23 Aligned_cols=254 Identities=50% Similarity=0.775 Sum_probs=242.2
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
|.||||||+|||||||||++++.+.++++|++|+++||||||||++||||++.++++++|++|+.|+|+.|++. .++
T Consensus 1 ~~imgIlN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~---~~~ 77 (257)
T cd00739 1 TQIMGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGE---LDV 77 (257)
T ss_pred CeEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999986 489
Q ss_pred eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
||||||++|+|+++||++|++|||||+|++.+++|++++++||+++|+||++|.|.+|+.. ..|+++++++..+|+++
T Consensus 78 plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~--~~~~~~~~~~~~~~~~~ 155 (257)
T cd00739 78 LISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQEN--PYYEDVVDEVLSFLEAR 155 (257)
T ss_pred cEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccC--CCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999875689999999999999999999999999875 35789999999999999
Q ss_pred HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
++.|.++||++++||+|||+||+|+.++++++|+++ +.+++|+++|+|||||||++++.+ +++|+++|++++++|+
T Consensus 156 i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~-~~~r~~~t~~~~~~~~ 234 (257)
T cd00739 156 LEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGRE-PKDRDWGTLALSALAA 234 (257)
T ss_pred HHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCC-ccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999887 456999999999999999999976 6899999999999999
Q ss_pred HcCCcEEEcCChHHHHHHHHHHH
Q 038230 448 LGGANIVRVHNIRDNLDAVKLCD 470 (480)
Q Consensus 448 ~~Ga~IlRvHdV~e~~~al~~~~ 470 (480)
++||+|+|||||+++++++++++
T Consensus 235 ~~Ga~iiRvHdv~~~~~~~~~~~ 257 (257)
T cd00739 235 ANGADIVRVHDVKATRDALKVAD 257 (257)
T ss_pred HcCCCEEEeCCHHHHHHHHHHhC
Confidence 99999999999999999999874
No 5
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=100.00 E-value=6.8e-70 Score=538.66 Aligned_cols=254 Identities=47% Similarity=0.781 Sum_probs=242.4
Q ss_pred EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
+||||||+|||||||||++.++++++++|++|+++|||+||||++||+|++..+++++|++|+.|+|+.+++. .++|
T Consensus 1 ~imgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~---~~~p 77 (257)
T TIGR01496 1 QIMGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ---PDVP 77 (257)
T ss_pred CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCCe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999976 4899
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHH
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKV 371 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i 371 (480)
|||||++|+++++||++|+++|||+++++ ++++++++++||+++|+||++|.|.+|+..+ .|+++++++..+|++++
T Consensus 78 lsiDT~~~~vi~~al~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~--~~~~~~~~~~~~~~~~i 154 (257)
T TIGR01496 78 ISVDTYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENP--HYEDVVEEVLRFLEARA 154 (257)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcccccCC--CcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 8999999999999999999999999997753 47899999999999999
Q ss_pred HHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHH
Q 038230 372 RDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVL 448 (480)
Q Consensus 372 ~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~ 448 (480)
++|.++||+++|||||||+||+|+.++++++|+++ +.+++|+++|+|||||||+++|++ +++|+++|++++++|++
T Consensus 155 ~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~-~~~r~~~t~~~~~~a~~ 233 (257)
T TIGR01496 155 EELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTP-PEERLEGTLAASAYAVQ 233 (257)
T ss_pred HHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCC-hhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 457999999999999999999987 68999999999999999
Q ss_pred cCCcEEEcCChHHHHHHHHHHHHH
Q 038230 449 GGANIVRVHNIRDNLDAVKLCDSM 472 (480)
Q Consensus 449 ~Ga~IlRvHdV~e~~~al~~~~ai 472 (480)
+||+|+|||||+++++++++++++
T Consensus 234 ~Ga~iiR~Hdv~~~~~~~~~~~~~ 257 (257)
T TIGR01496 234 KGADIVRVHDVKETRDALKVLEAL 257 (257)
T ss_pred cCCCEEEeCCHHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 6
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=100.00 E-value=6.6e-65 Score=503.82 Aligned_cols=253 Identities=49% Similarity=0.755 Sum_probs=240.0
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
+.||||||+|||||||||++.+.+.++++|++|+++||||||||++||||++.++|+++|++|+.|+|+.+++. .++
T Consensus 1 ~~imGilN~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~---~~~ 77 (258)
T cd00423 1 TLIMGILNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGE---PDV 77 (258)
T ss_pred CeEEEEecCCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc---CCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999976 489
Q ss_pred eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
||||||++|+|+++||++|++|||||++++.+++|++++++|+|++|+||++|.|.+|+.. ..|+++++++.++|+++
T Consensus 78 piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 155 (258)
T cd00423 78 PISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNN--PYYADVVDEVVEFLEER 155 (258)
T ss_pred eEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccC--CCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999875689999999999999999999999999874 45789999999999999
Q ss_pred HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a 446 (480)
+++|.++||++++||+|||+||+|+..+++++++++ +.+ |+|+++|+|||||++.+++.+ +++|..+|.+++++|
T Consensus 156 i~~~~~~Gi~~~~IilDPg~g~~k~~~~~~~~l~~i~~~~~~~g~Pil~G~Snksf~~~~~~~~-~~~R~~~t~a~~~~a 234 (258)
T cd00423 156 VEAATEAGIPPEDIILDPGIGFGKTEEHNLELLRRLDAFRELPGLPLLLGVSRKSFLGDLLSVG-PKDRLAGTAAFLAAA 234 (258)
T ss_pred HHHHHHcCCCHHHEEEeCCCCccCCHHHHHHHHHHHHHHHhcCCCcEEEEeccchhhcccCCCC-hHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999987 455 999999999999999998864 678999999999999
Q ss_pred HHcCCcEEEcCChHHHHHHHHHH
Q 038230 447 VLGGANIVRVHNIRDNLDAVKLC 469 (480)
Q Consensus 447 ~~~Ga~IlRvHdV~e~~~al~~~ 469 (480)
+.+|++++|||||++++++++++
T Consensus 235 ~~~G~~~~rvh~v~~~~~a~~~~ 257 (258)
T cd00423 235 ILNGADIVRVHDVKELRDAIKVA 257 (258)
T ss_pred HHcCCCEEEECCCHHHHHHHHhh
Confidence 99999999999999999999986
No 7
>COG0294 FolP Dihydropteroate synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=9.2e-60 Score=469.41 Aligned_cols=261 Identities=44% Similarity=0.642 Sum_probs=244.3
Q ss_pred CCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 038230 207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE 286 (480)
Q Consensus 207 ~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~ 286 (480)
++.++.||||||+|||||||||+|.+.+.|+.+|.+++++||++||||++||||++..+|.++|+.|+.|+|+.+++.
T Consensus 4 ~~~~~~imgIlNvtpdSfsDgg~~~~~~~a~~~a~~~~~~Ga~iIdiGgeStrpg~~~vs~~~E~~Rv~Pvl~~i~~~-- 81 (274)
T COG0294 4 LSLDPVIMGILNVTPDSFSDGGRFLSLDDALKHADKMIAEGADIIDIGGESTRPGAEFVSVEEELERVDPVLEAVRSP-- 81 (274)
T ss_pred CCCCcceEEEEeCCCCccCCCcccccHHHHHHHHHHHHhCCCcEEEeCCccCCCCCCccChHHHHHHHHHHHHHhhcc--
Confidence 334589999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred CCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHH-hcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230 287 MEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS 365 (480)
Q Consensus 287 ~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~-~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~ 365 (480)
..++++|+||++++|++.|+++|+++|||++|...+++++..++ ++++++|+||++|.|.+|+.. +++.++..
T Consensus 82 ~~~v~isvdt~r~~va~~a~~aG~~~inDv~g~~~~p~~la~va~e~~~~i~lmh~~~~~~~~~~~------d~~~~~~~ 155 (274)
T COG0294 82 ESDVAISVDTSRAEVAPLALGAGADEINDVDGGGIDPALLAAVAAELGAPILLMHEQGVPETMSIN------DLVAAVDM 155 (274)
T ss_pred CCceeEeccccchHHHHHHHHcccceeeecccCCCCHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc------hHHHHHHH
Confidence 15899999999999999999999999999999987876666666 999999999999999988752 78999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccCCCcEEEeeccccccccccCCCCcCcccHHHHHH
Q 038230 366 ELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AASHAPILIGPSRKRFLGEICNRPSADERDPATIAS 442 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~ 442 (480)
+|.++++.+..+||.+++||+|||+||+|+..||+++++++ ..+|+|+|+|+|||||++++++. ++.+|+++|.++
T Consensus 156 ~l~~~~~~~~~~gv~~~~iilDpg~gf~k~~~~n~~ll~~~~~~~~~g~piLvg~srK~~ig~~~~~-~~~~r~~gt~a~ 234 (274)
T COG0294 156 FLLARIEEALAAGVGRELIILDPGFGFGKTPEHNLELLARLSEFLELGFPILVGHSRKSFIGAILGR-DPAERLEGTLAT 234 (274)
T ss_pred HHHHHHHHHhhcCCChhhEEecCCcCCCcccchhHHHHHhHHHhhcCCCcEEEecCCceehhhhcCC-ChhhhhhhhHHH
Confidence 99999999999999999999999999999999999999998 35799999999999999999994 578999999999
Q ss_pred HHHHHHcCCcEEEcCChHHHHHHHHHHHHHHhhh
Q 038230 443 ITAGVLGGANIVRVHNIRDNLDAVKLCDSMLTRR 476 (480)
Q Consensus 443 ~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~~~ 476 (480)
++++..+|++++|||||++++++++++.+++..+
T Consensus 235 ~~~~~~~g~~ivrvHdv~~~~e~~k~~~Al~~~~ 268 (274)
T COG0294 235 ELLAAALGADIVRVHDVYEGRELLKAEIALKLGK 268 (274)
T ss_pred HHHHHHcCCCEEEEcchHhhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999997654
No 8
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=100.00 E-value=1.2e-52 Score=404.31 Aligned_cols=204 Identities=46% Similarity=0.730 Sum_probs=188.6
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCcCCCCeEEE
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT-MPEMEGKLVSV 294 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~-~~~~~~~pISI 294 (480)
|||+|||||||||++.+.++++++|++|+++||||||||++||||++.++++++|++|+.|+|+.+++ . .++||||
T Consensus 1 ilNvt~dSf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSI 77 (210)
T PF00809_consen 1 ILNVTPDSFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSI 77 (210)
T ss_dssp EEEESCCTTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred CEEecCCCCcccCcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999996 3 4899999
Q ss_pred eCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh-hHHHHHHHHHHHHHHH
Q 038230 295 DTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD-DVCKQVASELYSKVRD 373 (480)
Q Consensus 295 DT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~-~v~~ev~~~l~~~i~~ 373 (480)
||++|+|+++||++|+++|||+++++.+++|++++++|++++|+||++|.|.+|.+.. .|. +++.++.++|.++++.
T Consensus 78 DT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~i~~ 155 (210)
T PF00809_consen 78 DTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETA--DYRLDIAEEIIEFLEERIEA 155 (210)
T ss_dssp EESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSH--HHSHSHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEecccccccccccc--hhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998768999999999999999999998787776542 344 8999999999999999
Q ss_pred HHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---ccC-CCcEEEeeccccccc
Q 038230 374 AELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---AAS-HAPILIGPSRKRFLG 424 (480)
Q Consensus 374 a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~~~-g~Pil~G~SrKsfi~ 424 (480)
|.++||++++||+|||+||+|+..+++++++++ +.+ ++|+++|.|||+|+|
T Consensus 156 l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~srk~~~G 210 (210)
T PF00809_consen 156 LEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSRKSFIG 210 (210)
T ss_dssp HHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETTGHHHH
T ss_pred HHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccC
Confidence 999999999999999999999999999999988 445 999999999999986
No 9
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=100.00 E-value=6.4e-45 Score=332.43 Aligned_cols=138 Identities=41% Similarity=0.682 Sum_probs=134.4
Q ss_pred ceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHH
Q 038230 43 EQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKD 121 (480)
Q Consensus 43 ~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~ 121 (480)
++.||||||||+||+.++++.|++.|+++ ..+|+..|++|+|+|||+.+|++|+|+|+.++|+|+|.+|++.+++||++
T Consensus 1 ~~~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S~~y~t~p~G~~~Q~~FlN~v~~v~T~L~p~eLL~~l~~iE~~ 80 (160)
T COG0801 1 MTRVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVSPIYETPPVGYEDQPDFLNAVVEVETTLSPRELLARLQAIERR 80 (160)
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEeccceecCCCCCCCCcchheEEEEEeccCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999 46799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230 122 MGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180 (480)
Q Consensus 122 ~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~ 180 (480)
+||.|..||||||||||||+||++++++++|+||||++++|+||+.||+|+.|+++||.
T Consensus 81 ~gR~R~~rwgPRtlDlDIllygd~~~~~~~LtiPHp~~~eR~FVL~PL~ei~p~~~~p~ 139 (160)
T COG0801 81 LGRVRSERWGPRTLDLDILLYGDEVIETPRLTLPHPRMLERAFVLIPLAEIAPDLVHPG 139 (160)
T ss_pred cCccccccCCCcceeeEEEEEcceeccCCCccccCcchhhCchhHHhhhhhCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999996
No 10
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=100.00 E-value=5.2e-42 Score=340.21 Aligned_cols=231 Identities=22% Similarity=0.263 Sum_probs=195.6
Q ss_pred EEE-EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 213 VMG-ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 213 imG-IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
+.| =+|.|-=.|..-=.-.+++.++++|++|+++||||||||+++ ++++|++|+.|+|+.+++. .++|
T Consensus 3 ~IGErin~~~~~~~~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~--------~~~eE~~r~~~~v~~l~~~---~~~p 71 (261)
T PRK07535 3 IIGERINGTRKSIAEAIEAKDAAFIQKLALKQAEAGADYLDVNAGT--------AVEEEPETMEWLVETVQEV---VDVP 71 (261)
T ss_pred EEEeccchhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCCC--------CchhHHHHHHHHHHHHHHh---CCCC
Confidence 344 355552233332223678999999999999999999999974 2468899999999999976 4899
Q ss_pred EEEeCCCHHHHHHHHHc--CCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHHHH
Q 038230 292 VSVDTFYSKVASEAVGK--GAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVASE 366 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~--G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~ 366 (480)
|||||++|+|+++||++ |++|||||++++. +++|++++++||+++|+||+ +|.|+|+++ +.++
T Consensus 72 lsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~------------~~~~ 139 (261)
T PRK07535 72 LCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAED------------RLAV 139 (261)
T ss_pred EEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHH------------HHHH
Confidence 99999999999999998 9999999999753 58999999999999999887 789988754 3588
Q ss_pred HHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc---c--cCCCcEEEeeccccccccccCCCCcCcccHHHH
Q 038230 367 LYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL---A--ASHAPILIGPSRKRFLGEICNRPSADERDPATI 440 (480)
Q Consensus 367 l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l---~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~ 440 (480)
+++++++|.++||++++||+|||+| |+++..+++++++.+ + ++|+|+++|+||||| |+| +|...|.
T Consensus 140 l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sf-----glp---~r~~in~ 211 (261)
T PRK07535 140 AKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISF-----GLP---NRKLINR 211 (261)
T ss_pred HHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcc-----CCc---chHHHHH
Confidence 8999999999999999999999999 589888887777766 3 239999999999999 774 6899999
Q ss_pred HHHHHHHHcCC--cEEEcCChHHHHHHHHHHHHHHhh
Q 038230 441 ASITAGVLGGA--NIVRVHNIRDNLDAVKLCDSMLTR 475 (480)
Q Consensus 441 a~~~~a~~~Ga--~IlRvHdV~e~~~al~~~~ai~~~ 475 (480)
++.++|++.|. .|+.+.| ..++++++.++.+.+.
T Consensus 212 ~fl~~a~~~Gl~~aI~np~~-~~~~~~~~~~~~l~g~ 247 (261)
T PRK07535 212 AFLVMAMGAGMDSAILDPLD-RDLMGAIAAAEALLGQ 247 (261)
T ss_pred HHHHHHHHcCCCEEeeCCCC-HHHHHHHHHHHHHhCC
Confidence 99999999995 5888888 5699999999998654
No 11
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=100.00 E-value=6.1e-43 Score=322.60 Aligned_cols=140 Identities=32% Similarity=0.565 Sum_probs=134.2
Q ss_pred cccceeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHH
Q 038230 40 QSQEQEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKI 118 (480)
Q Consensus 40 ~~~~~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~I 118 (480)
...++++|||||||+||+++|+++|++.|++. +..++.+|++|+|+|||+. |++|+|+|+.++|+++|++|++.||.|
T Consensus 4 ~~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~-q~dFlN~vv~~~T~l~p~~Ll~~L~~I 82 (163)
T PRK14092 4 SPASALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQ-GPDFVNAVAALDTTLAPLDLLDLLQAL 82 (163)
T ss_pred CCcCCEEEEEecCchHhHHHHHHHHHHHHHhCCCCeeEEECCCEEeCCCCCC-CCchhEEEEEEEeCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999986 6678899999999999985 999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230 119 EKDMGRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180 (480)
Q Consensus 119 E~~~GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~ 180 (480)
|+++||+|..|||||+||||||+||++++++++|+||||++++|+||+.||+||+|++.||.
T Consensus 83 E~~~GR~r~~k~gpRtiDlDIL~~~~~~~~~~~L~iPHp~~~~R~FVL~PL~ei~p~~~~p~ 144 (163)
T PRK14092 83 EQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELAPALRLAQ 144 (163)
T ss_pred HHHcCCCCCcCCCCceeeeEEeccCCeEecCCCcccCCcchhhChHHHHHHHHhCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999984
No 12
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=100.00 E-value=9.1e-43 Score=320.43 Aligned_cols=137 Identities=37% Similarity=0.564 Sum_probs=132.6
Q ss_pred eeEEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHc
Q 038230 44 QEVVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDM 122 (480)
Q Consensus 44 ~~~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~ 122 (480)
+++|||||||+||+.+|+++|++.|+++ +.+++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|++.||+||+++
T Consensus 2 ~~v~i~lGSN~g~~~~~l~~A~~~L~~~~~~~i~~~S~~y~T~P~g~~~q~~FlN~v~~i~T~l~p~~Ll~~l~~IE~~~ 81 (159)
T PRK10239 2 TVAYIAIGSNLASPLEQVNAALKALGDIPESRILAVSSFYRTPPLGPQDQPDYLNAAVALETALAPEELLNHTQRIELQQ 81 (159)
T ss_pred cEEEEEEeCchhhHHHHHHHHHHHHhcCCCCeEEEECCCEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999987 677899999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhhhCCCcccc
Q 038230 123 GRTNG-IRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDLLGSSVESD 180 (480)
Q Consensus 123 GR~r~-~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el~~~~~~p~ 180 (480)
||.|. .|||||+||||||+||+.++++++|+||||++++|+||+.||+||.|++.||.
T Consensus 82 GR~r~~~~~gpRtiDlDIL~y~~~~~~~~~L~iPHp~~~~R~FVl~PL~ei~p~~~~p~ 140 (159)
T PRK10239 82 GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPD 140 (159)
T ss_pred CCCCCCcCCCCceEEEEEEecCCeeecCCCcccCCcChhhChHHHHHHHHhCCCCcCCC
Confidence 99996 79999999999999999999999999999999999999999999999999994
No 13
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=100.00 E-value=6.8e-42 Score=337.77 Aligned_cols=219 Identities=17% Similarity=0.201 Sum_probs=186.0
Q ss_pred EEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 212 SVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 212 ~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
.+.| =+|.| ++||++++...+++.++++|++|+++||||||||++ |+ .+++++|+.|++++++.+. +
T Consensus 2 ~~iGerin~~g~~~~~~~~~~~~~d~~~~~A~~~~~~GAdiIDIG~~---~~--~~~~~ee~~r~v~~i~~~~------~ 70 (252)
T cd00740 2 LNIGERTNVTGSKKFRELIKAEDYDEALDVARQQVEGGAQILDLNVD---YG--GLDGVSAMKWLLNLLATEP------T 70 (252)
T ss_pred ceEeeccCccCcHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC---CC--CCCHHHHHHHHHHHHHHhc------C
Confidence 4566 68888 999999999999999999999999999999999985 43 5788999999988875443 7
Q ss_pred CeEEEeCCCHHHHHHHHHc--CCCEEecCCCCC---CCchHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHH
Q 038230 290 KLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQ---LDPDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQ 362 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~---~d~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~e 362 (480)
+||||||++|+|+++||++ |++|||||++++ .+++|++++++|++++|+||+ +|.|.|++++
T Consensus 71 ~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~----------- 139 (252)
T cd00740 71 VPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKK----------- 139 (252)
T ss_pred CcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHH-----------
Confidence 8999999999999999998 999999999975 258899999999999999998 6788887542
Q ss_pred HHHHHHHHHHHHH-HCCCCCCCEEEecCCCCccC--hhHHHHHHHhc---c-----cCCCcEEEeeccccccccccCCCC
Q 038230 363 VASELYSKVRDAE-LSGIPAWRIIIDPGLGFSKK--AEHNLDILLGL---A-----ASHAPILIGPSRKRFLGEICNRPS 431 (480)
Q Consensus 363 v~~~l~~~i~~a~-~~Gi~~~~IilDPgiGf~k~--~~~~~~~lr~l---~-----~~g~Pil~G~SrKsfi~~v~g~~~ 431 (480)
.+++++.++.+. +.|+++++||+|||+||+++ .++|+++++++ + .+|+|+++|+||||| |+++
T Consensus 140 -~~~~~~~~~~~~~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~SnkSf-----~~~~ 213 (252)
T cd00740 140 -VEIAERAYEALTEFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVSNVSF-----GFNP 213 (252)
T ss_pred -HHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeccccc-----CCCc
Confidence 356667777775 67999999999999999884 57777666665 2 369999999999999 6443
Q ss_pred cCcccHHHHHHHHHHHHcCC--cEEEcCCh
Q 038230 432 ADERDPATIASITAGVLGGA--NIVRVHNI 459 (480)
Q Consensus 432 ~~~r~~~t~a~~~~a~~~Ga--~IlRvHdV 459 (480)
.+|...|.+++++|++.|. .|+.++|.
T Consensus 214 -~~r~~in~~f~~~a~~~Gl~~ai~np~~~ 242 (252)
T cd00740 214 -AAREALNSVFLYEAIKAGLDMAIVNAGKL 242 (252)
T ss_pred -hhHHHHHHHHHHHHHHcccceeecCcccc
Confidence 4799999999999999995 57777773
No 14
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=100.00 E-value=3e-42 Score=306.70 Aligned_cols=127 Identities=48% Similarity=0.779 Sum_probs=123.3
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhcCCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCCC
Q 038230 46 VVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRT 125 (480)
Q Consensus 46 ~~l~LGSN~gd~~~~i~~A~~~L~~~~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~ 125 (480)
+|||||||+||+++|+++|++.|++.+..++.+|++|+|+|||+.+|++|+|+|+.++|+++|.+|++.||+||+++||+
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~i~~~S~~y~T~p~g~~~q~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~GR~ 80 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVRLLIVSSIYETPPWGFTDQPDFLNAVVEVETTLAPRELLALLQAIEAELGRV 80 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcceEEEccCEEEcCCCCCCCchhheEEEEEEeCCCHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999988777888999999999999899999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230 126 NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL 172 (480)
Q Consensus 126 r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el 172 (480)
|..||||||||||||+|+++++++++|+||||++++|+||+.||+||
T Consensus 81 r~~~~~pRtlDlDIl~~~~~~~~~~~l~iPHp~~~~R~FVl~PL~ei 127 (127)
T TIGR01498 81 REFRWGPRTLDLDILLYGDEVLDEPDLTVPHPRMLERPFVLLPLAEI 127 (127)
T ss_pred CCCCCCCceEeEEEEccCCEEecCCCcCcCCcchhhCcHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999985
No 15
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=100.00 E-value=2.3e-41 Score=301.76 Aligned_cols=127 Identities=49% Similarity=0.791 Sum_probs=122.9
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCC
Q 038230 46 VVIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGR 124 (480)
Q Consensus 46 ~~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR 124 (480)
+|||||||+||+++|+++|++.|++. +..++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|++.||+||+++||
T Consensus 1 ~~i~LGSN~~~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~p~g~~~~~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~GR 80 (128)
T cd00483 1 VYLALGSNLGDRLANLRAALRALAALPGIEILAVSPLYETAPVGFTDQPDFLNAVVELETSLSPLELLDALQAIEQRLGR 80 (128)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHHcCCCCCceEECCCEEeCCCCCCCChHHHheEEEEEECCCHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999988 45789999999999999989999999999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230 125 TNGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL 172 (480)
Q Consensus 125 ~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el 172 (480)
+|..||+||+||||||+|++.++++++|+||||++++|+||+.||+|+
T Consensus 81 ~r~~~~~~RtiDlDIl~~~~~~~~~~~l~iPHp~~~~R~FVl~PL~ei 128 (128)
T cd00483 81 VRKERWGPRTLDLDILLYGDEVIDTPDLTLPHPRMHERAFVLVPLAEI 128 (128)
T ss_pred CCcccCCCceeeEEEEccCCEEecCCCcccCCcchhhChHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999985
No 16
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=100.00 E-value=2.2e-39 Score=344.90 Aligned_cols=229 Identities=17% Similarity=0.137 Sum_probs=191.8
Q ss_pred ccccccccCCCC-CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH
Q 038230 198 LPIGNLLWDWSL-KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP 276 (480)
Q Consensus 198 ~~~~~~~~~~~~-~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~ 276 (480)
+.+++.+++... +++|+|.++-+| ++ ++++++|++|+++||||||||++||+|++ +|+.|
T Consensus 138 ~~i~~~~i~~~~p~~~v~aEI~~a~--------~l--~~i~~~A~~~~~~GADIIDIG~~st~p~~---------~~v~~ 198 (499)
T TIGR00284 138 FRIGSLKIPLKPPPLRVVAEIPPTV--------AE--DGIEGLAARMERDGADMVALGTGSFDDDP---------DVVKE 198 (499)
T ss_pred hhccCcCCCCCCCCeEEEEEEcCCc--------ch--HHHHHHHHHHHHCCCCEEEECCCcCCCcH---------HHHHH
Confidence 344555665544 689999999999 34 78999999999999999999999999853 37999
Q ss_pred HHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccch
Q 038230 277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQY 356 (480)
Q Consensus 277 vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~ 356 (480)
+|+.+++. .++||||||++|+++++||++|++|||||++++ .++|++++++||+++|+||++..+
T Consensus 199 ~V~~l~~~---~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~-~d~~~~l~a~~g~~vVlm~~~~~~----------- 263 (499)
T TIGR00284 199 KVKTALDA---LDSPVIADTPTLDELYEALKAGASGVIMPDVEN-AVELASEKKLPEDAFVVVPGNQPT----------- 263 (499)
T ss_pred HHHHHHhh---CCCcEEEeCCCHHHHHHHHHcCCCEEEECCccc-hhHHHHHHHHcCCeEEEEcCCCCc-----------
Confidence 99999976 489999999999999999999999999999986 579999999999999999974111
Q ss_pred hhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccC-hhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCc
Q 038230 357 DDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKK-AEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADE 434 (480)
Q Consensus 357 ~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~-~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~ 434 (480)
.+++|.+++++|.++|++ +||+|||+||... ...+++.++.+ +.+++|+|+|+|| ++++.+ .|
T Consensus 264 ------~~~~l~~~ie~a~~~Gi~--~IIlDPglg~~~~~l~~sL~~l~~~r~~~~~Pil~GvSN------vtel~d-aD 328 (499)
T TIGR00284 264 ------NYEELAKAVKKLRTSGYS--KVAADPSLSPPLLGLLESIIRFRRASRLLNVPLVFGAAN------VTELVD-AD 328 (499)
T ss_pred ------hHHHHHHHHHHHHHCCCC--cEEEeCCCCcchHHHHHHHHHHHHHHHhcCCcEEEeecc------ccCCCc-cc
Confidence 127899999999999995 8999999998432 23334444443 2468999999985 445553 59
Q ss_pred ccHHHHHHHHHHHHcCCcEEEcCC--------hHHHHHHHHHHHHHHhh
Q 038230 435 RDPATIASITAGVLGGANIVRVHN--------IRDNLDAVKLCDSMLTR 475 (480)
Q Consensus 435 r~~~t~a~~~~a~~~Ga~IlRvHd--------V~e~~~al~~~~ai~~~ 475 (480)
|.++|++++++|+++|++|+|||| |+|+++|++|+.+++..
T Consensus 329 s~g~naal~~~a~e~Ga~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~~ 377 (499)
T TIGR00284 329 SHGVNALLAAIALEAGASILYVVEDSYKSYRSTAEAAEAAKMASAARKL 377 (499)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEcCCcccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 99999999999998643
No 17
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=100.00 E-value=2.4e-40 Score=294.89 Aligned_cols=126 Identities=48% Similarity=0.798 Sum_probs=116.0
Q ss_pred EEEeCCCcccHHHHHHHHHHHHHhc-CCcEEEeeCcEEeCCCCCCCCccceeeeeeeccCCCHHHHHHHHHHHHHHcCCC
Q 038230 47 VIAMGSNVGDRLCNFNEALQLMKKL-GVNITRHGCLYETEPAYVTDQPRFLNSAVRGVTKLGPHELLGVLKKIEKDMGRT 125 (480)
Q Consensus 47 ~l~LGSN~gd~~~~i~~A~~~L~~~-~~~i~~~S~~y~T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~~lk~IE~~~GR~ 125 (480)
|||||||+||+++||++|++.|++. +..++.+|++|+|+|+|+.+|++|+|+|+.++|+++|.+|+..||+||+++||+
T Consensus 1 ~i~LGSN~~~~~~~l~~A~~~L~~~~~~~~~~~S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~GR~ 80 (127)
T PF01288_consen 1 YISLGSNLGDREQNLRQALQALSALPGFGVIRFSSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRLGRD 80 (127)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHCSTTEEEEEEEEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHTTSC
T ss_pred CEEEeCchHhHHHHHHHHHHHHhcCCCCCcEEECCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHhCCC
Confidence 7999999989999999999999999 668899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccchhhcccCCeeeeCCCccccccccccchhhhhhhhhh
Q 038230 126 NGIRHGPRPIDLDILFYGRFSIHSDTLTVPHERIWERPFVVAPLLDL 172 (480)
Q Consensus 126 r~~~~~~r~iDiDIl~~~~~~~~~~~l~iPHp~~~~R~fVl~pl~el 172 (480)
|..||+||+||||||+|++.++++++|+||||++++|+||+.||+||
T Consensus 81 r~~~~~~R~lDlDil~~~~~~~~~~~L~lPHp~~~~R~FVl~Pl~ei 127 (127)
T PF01288_consen 81 RSSKWGPRTLDLDILLYGDEVINEPDLTLPHPRIHERAFVLVPLAEI 127 (127)
T ss_dssp STSTTSSCSEEEEEEEETTB-EESSSEEES-TTGGG-HHHHHHHHHH
T ss_pred CcCCCCCceeeeeeEEEeccEEcCCCcEeeccChhhCHHHHHHHHhC
Confidence 98899999999999999999999999999999999999999999986
No 18
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=100.00 E-value=4.3e-35 Score=337.85 Aligned_cols=235 Identities=17% Similarity=0.190 Sum_probs=194.1
Q ss_pred CCCCCcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 038230 206 DWSLKTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT 283 (480)
Q Consensus 206 ~~~~~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~ 283 (480)
+.+.++.++| =+|+| -.+|.+.-+..+.+.|+++|++|+++||+|||||++ ...+++++|++|++++|....+
T Consensus 338 ~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-----~~~vd~~eem~rvv~~i~~~~~ 412 (1178)
T TIGR02082 338 AQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-----YGMLDGVAAMKRFLNLLASEPD 412 (1178)
T ss_pred cCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-----CCCCCHHHHHHHHHHHHHhccC
Confidence 3345688999 79999 779999988899999999999999999999999986 4568899999999888754211
Q ss_pred CCcCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccch
Q 038230 284 MPEMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQY 356 (480)
Q Consensus 284 ~~~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~ 356 (480)
. +++||||||++++|+++||+. |++||||||++..+ ++|++++++||+++|+||+ +|+|.|++++
T Consensus 413 ~---~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e~r----- 484 (1178)
T TIGR02082 413 I---STVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTADRK----- 484 (1178)
T ss_pred C---CCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHH-----
Confidence 2 489999999999999999998 99999999996422 4799999999999999998 6889888764
Q ss_pred hhHHHHHHHHHHHHHHHHHH-CCCCCCCEEEecCCC---CccChhHHHHH------HHhc--ccCCCcEEEeeccccccc
Q 038230 357 DDVCKQVASELYSKVRDAEL-SGIPAWRIIIDPGLG---FSKKAEHNLDI------LLGL--AASHAPILIGPSRKRFLG 424 (480)
Q Consensus 357 ~~v~~ev~~~l~~~i~~a~~-~Gi~~~~IilDPgiG---f~k~~~~~~~~------lr~l--~~~g~Pil~G~SrKsfi~ 424 (480)
.++++++++.|.+ +||++++||||||+| |++. +||+.. ++.+ ..+|+|+++|+|||||
T Consensus 485 -------~~i~~~~~~~~~~~~Gi~~edIi~DP~i~~v~~g~~-e~n~~~~~~le~i~~ik~~~pg~~~~~GlSN~SF-- 554 (1178)
T TIGR02082 485 -------IEICKRAYNILTEKVGFPPEDIIFDPNILTIATGIE-EHRRYAINFIEAIRWIKEELPDAKISGGVSNVSF-- 554 (1178)
T ss_pred -------HHHHHHHHHHHHHHcCCCHHHEEEeCCccccccCch-HHHHHHHHHHHHHHHHHHhCCCCceEEEeccccc--
Confidence 3688999999987 999999999999998 8876 555444 4444 2469999999999999
Q ss_pred cccCCC-CcCcccHHHHHHHHHHHHcCC--cEEEcCChHHHHHHHH
Q 038230 425 EICNRP-SADERDPATIASITAGVLGGA--NIVRVHNIRDNLDAVK 467 (480)
Q Consensus 425 ~v~g~~-~~~~r~~~t~a~~~~a~~~Ga--~IlRvHdV~e~~~al~ 467 (480)
|+| ++..|...+.++.++|+..|- .|+.+.+. +++..+.
T Consensus 555 ---glp~~~~~R~~ln~~FL~~a~~~Gld~aIvnp~~~-~~~~~i~ 596 (1178)
T TIGR02082 555 ---SFRGNPAAREAMHSVFLYHAIRAGMDMGIVNAGKI-LPYDDID 596 (1178)
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHcCCchhhcChhhh-hHHHhhC
Confidence 665 345799999999999999995 56666663 2444443
No 19
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=99.97 E-value=1.8e-31 Score=307.24 Aligned_cols=227 Identities=19% Similarity=0.200 Sum_probs=188.8
Q ss_pred CCCcEEEE-EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230 208 SLKTSVMG-ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP 285 (480)
Q Consensus 208 ~~~~~imG-IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~ 285 (480)
+.++.++| =+|+| -.+|...-+-.+++.++++|++|+++||+|||||+ +...+++++|+.|++++|..+.+.
T Consensus 356 ~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-----g~~~id~~eem~rvv~~i~~~~~~- 429 (1229)
T PRK09490 356 DSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINM-----DEGMLDSEAAMVRFLNLIASEPDI- 429 (1229)
T ss_pred CCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-----CCCCCCHHHHHHHHHHHHHhhhcc-
Confidence 44677888 78988 77888887778999999999999999999999995 566799999999999999887664
Q ss_pred cCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCCc---hHHHHHHhcCCCEEEEcC--CCCCCccccccccchhh
Q 038230 286 EMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLDP---DMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDD 358 (480)
Q Consensus 286 ~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d~---~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~ 358 (480)
.++||||||++++|+++||+. |++||||||++..++ +|++++++||++||+||+ .|+|.|.++
T Consensus 430 --~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~-------- 499 (1229)
T PRK09490 430 --ARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTRER-------- 499 (1229)
T ss_pred --CCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHHH--------
Confidence 489999999999999999998 999999999975443 699999999999999998 578877554
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCCCCEEEecCCCCccCh--------hHHHHHHHhcc--cCCCcEEEeecccccccccc
Q 038230 359 VCKQVASELYSKVRDAEL-SGIPAWRIIIDPGLGFSKKA--------EHNLDILLGLA--ASHAPILIGPSRKRFLGEIC 427 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~-~Gi~~~~IilDPgiGf~k~~--------~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~ 427 (480)
..+.+++.++.|.+ +||++++|||||++.+..+. .+.++.+|.++ .+++++++|+||+|| .+.
T Consensus 500 ----r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~~P~~~~~~GlSNiSF--gl~ 573 (1229)
T PRK09490 500 ----KIEICKRAYDILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPHAKISGGVSNVSF--SFR 573 (1229)
T ss_pred ----HHHHHHHHHHHHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHHCCCCcEEEeeccccc--cCC
Confidence 44677888888875 99999999999999886542 33466666663 569999999999999 222
Q ss_pred CCCCcCcccHHHHHHHHHHHHcCC--cEEEcCC
Q 038230 428 NRPSADERDPATIASITAGVLGGA--NIVRVHN 458 (480)
Q Consensus 428 g~~~~~~r~~~t~a~~~~a~~~Ga--~IlRvHd 458 (480)
|. +..|...+.+|.++|+..|- .|+.+.+
T Consensus 574 g~--~~~R~~lns~FL~~a~~aGld~aIvnp~~ 604 (1229)
T PRK09490 574 GN--NPVREAIHAVFLYHAIKAGMDMGIVNAGQ 604 (1229)
T ss_pred CC--CchHHHHHHHHHHHHHHcCcchhhcCccc
Confidence 32 23698999999999999995 4555555
No 20
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=99.93 E-value=2.4e-24 Score=227.05 Aligned_cols=209 Identities=16% Similarity=0.154 Sum_probs=171.4
Q ss_pred CCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHH-----HHcC----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230 207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLM-----ISEG----ADMIDIGAQSTRPMATKISAEKELERLIPV 277 (480)
Q Consensus 207 ~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~-----v~~G----AdiIDIG~eStrP~a~~v~~~eE~~rl~~v 277 (480)
+..+|+|..-+ ++ ..+.+++.++++.+ ...| ||+||||..|.. .+++.++
T Consensus 88 f~np~~Ia~eI--~D--------~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~d-----------p~~v~~~ 146 (450)
T PRK04165 88 FFNPTGIAVDV--SD--------TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGD-----------PEKFAKA 146 (450)
T ss_pred CCCCCEEEEEE--eC--------CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCC-----------HHHHHHH
Confidence 45678998877 33 34668888898888 7788 999999987753 3478899
Q ss_pred HHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230 278 LEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ 355 (480)
Q Consensus 278 i~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~ 355 (480)
|+.+++. .++||||||++|+++++|+++|++.+|+|++.+.+ ++|++++++||+++|++|..
T Consensus 147 Vk~V~~~---~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d------------- 210 (450)
T PRK04165 147 VKKVAET---TDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN------------- 210 (450)
T ss_pred HHHHHHh---cCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchh-------------
Confidence 9999975 48999999999999999999999966666665545 88999999999999998841
Q ss_pred hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC-CccChhHHHHHHHhc------ccCCCcEEEeeccccccccccC
Q 038230 356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG-FSKKAEHNLDILLGL------AASHAPILIGPSRKRFLGEICN 428 (480)
Q Consensus 356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG-f~k~~~~~~~~lr~l------~~~g~Pil~G~SrKsfi~~v~g 428 (480)
.+++.++++++.++|+ +|||||||+| |+++. ++++.+|++ +.+|+|+++|.|||+|
T Consensus 211 --------l~~L~~lv~~~~~~GI--~dIILDPg~ggf~ksl-~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~------ 273 (450)
T PRK04165 211 --------LEELKELVEKLQAAGI--KDLVLDPGTENIKETL-DDFVQIRRAAIKKGDRPLGYPIIAFPIEAWM------ 273 (450)
T ss_pred --------HHHHHHHHHHHHHcCC--CcEEECCCCchhhhhH-HHHHHHHhhhhhcccccCCCCEEEcchhhcc------
Confidence 2678899999999999 6999999997 99998 567888887 3689999999999999
Q ss_pred CCCcCcccHHHHHHHHHHHHcCCcEEEcCCh--HHHHHHHHHHHHHHh
Q 038230 429 RPSADERDPATIASITAGVLGGANIVRVHNI--RDNLDAVKLCDSMLT 474 (480)
Q Consensus 429 ~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV--~e~~~al~~~~ai~~ 474 (480)
.+..+.+.. ++..+.+|++|+..|+. .++...+.+.+.||.
T Consensus 274 ----~~~~~E~~~-As~~~~kya~i~Vl~~~~~~~~~p~~~~r~niyt 316 (450)
T PRK04165 274 ----SDPMKEAAI-ASTLIAKYADILVLHDIEPWELLPLLTLRQNIYT 316 (450)
T ss_pred ----cchHHHHHH-HHHHHHhCCcEEEEcCCCHHHHhhHHHHHHhccC
Confidence 133455554 56677799999999984 558888888888874
No 21
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=99.86 E-value=4.3e-21 Score=206.69 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=163.7
Q ss_pred CCCCcEEEE-EEecCCC-CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 207 WSLKTSVMG-ILNLTPD-SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 207 ~~~~~~imG-IlN~tpD-SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
.+..+.++| =.|+|-= =|.+-=.--+++++++.|++|+++||+|||||.. -...+....+. .++..+...
T Consensus 25 ~~~~fv~iGERtN~tGskkf~~li~~~~y~~~l~iAr~Qv~~GA~ilDvn~d-----~~~~D~~~~m~---~~l~~~a~~ 96 (842)
T COG1410 25 QDNSFVNIGERTNVTGSKKFRRLIIAEDYDEALDVARQQVENGAQILDVNVD-----YVGRDGVADMV---ELLNLLANE 96 (842)
T ss_pred CCCceeEeecccCccchHHHHHHHHcccHHHHHHHHHHHHhcCCEEEEeecc-----ccccccHHHHH---HHHHHhccC
Confidence 334455666 4666620 0111001257899999999999999999999973 22333444444 455666766
Q ss_pred CcCCCCeEEEeCCCHHHHHHHHHc--CCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccchh
Q 038230 285 PEMEGKLVSVDTFYSKVASEAVGK--GAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYD 357 (480)
Q Consensus 285 ~~~~~~pISIDT~~~~v~~aaL~~--G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~ 357 (480)
+++||+|||+..+++++||+. |..++||||..... ...++++++||+++|+|.. .|...|.+++
T Consensus 97 ---~~vPlMIDSs~~eviEagLk~~qGk~ivNSis~eege~~f~~~~~LvkkYGaaVVvma~DE~GqA~t~eRK------ 167 (842)
T COG1410 97 ---PTVPLMIDSSEWEVIEAGLKCAQGKCIVNSINYEEGEERFEKVAELVKKYGAAVVVMTIDEEGQARTAERK------ 167 (842)
T ss_pred ---CCCceEEehhHHHHHHHHHhhccCceeeeeeeecccHHHHHHHHHHHHHhCCcEEEEeeccccccccHHHH------
Confidence 589999999999999999997 99999999986543 3578999999999999986 4555554432
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-cc-------ChhHHHHHHHhc--ccCCCcEEEeecccccccccc
Q 038230 358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SK-------KAEHNLDILLGL--AASHAPILIGPSRKRFLGEIC 427 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k-------~~~~~~~~lr~l--~~~g~Pil~G~SrKsfi~~v~ 427 (480)
.+.+++.+....+.|+++++||+||++.. +. ...+.++.+++| ..+.+.+..|+||.||
T Consensus 168 ------~eIakR~y~l~~~~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~LP~~~tt~GvSNvSF----- 236 (842)
T COG1410 168 ------FEIAKRAYILTEEVGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKELPHVLTTLGLSNVSF----- 236 (842)
T ss_pred ------HHHHHHHHHHHHhcCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHhCccceeccccccccC-----
Confidence 23344445566899999999999998743 22 223457778888 3578999999999999
Q ss_pred CCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 428 NRPSADERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 428 g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
|.+ +..|...+.++..+|+..|-++-.||-
T Consensus 237 slr-g~~Re~lnavFLy~~i~aGmD~aIVNa 266 (842)
T COG1410 237 GLR-GAVREVLNSVFLYEAISAGLDMAIVNA 266 (842)
T ss_pred CCC-hHHHHhhhHHHHHHHHhcCCchhhccc
Confidence 665 357999999999999999987766665
No 22
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=99.79 E-value=4.3e-18 Score=172.51 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=160.9
Q ss_pred CCCCcEEEE-EEecCCCCCCCCCccCCHHHH----HHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 038230 207 WSLKTSVMG-ILNLTPDSFSDGGKFQSVEAA----VSQVRLMI-SEGADMIDIGAQSTRPMATKISAEKELERLIPVLEA 280 (480)
Q Consensus 207 ~~~~~~imG-IlN~tpDSFsdgg~~~~~e~a----~~~A~~~v-~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~ 280 (480)
+..+|.|-= |-..-||.|.+. .-.-++++ .+.|++|. +.|||+|||+..|+.|... +.|.+.+.++++.
T Consensus 44 ~~n~p~ia~~v~D~~~~~~~~~-i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~----d~~~~e~~~~Vk~ 118 (319)
T PRK04452 44 MPNPPVIAMEVFDMPPEDWPEA-VKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGK----DKSPEEAAKTVEE 118 (319)
T ss_pred CCCCCeEEEEEecCCCcccHHH-HHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccc----cchHHHHHHHHHH
Confidence 334555544 444444454442 11123445 77888998 9999999999989887432 2344445567788
Q ss_pred HHcCCcCCCCeEEEeCC-----CHHHHHHHHHc--CC-CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230 281 VLTMPEMEGKLVSVDTF-----YSKVASEAVGK--GA-HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE 352 (480)
Q Consensus 281 l~~~~~~~~~pISIDT~-----~~~v~~aaL~~--G~-~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~ 352 (480)
+++. +++|++||+. +|+|+++||++ |. .|||+++..+ -++|+++|++||++||++...
T Consensus 119 V~ea---vd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en-~~~i~~lA~~y~~~Vva~s~~---------- 184 (319)
T PRK04452 119 VLQA---VDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDN-YKKIAAAAMAYGHAVIAWSPL---------- 184 (319)
T ss_pred HHHh---CCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHH-HHHHHHHHHHhCCeEEEEcHH----------
Confidence 8876 5999999977 89999999997 44 8999999764 489999999999999997632
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccCh---hHHHHHHHhc-----ccCCCcEEEeeccc---
Q 038230 353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKA---EHNLDILLGL-----AASHAPILIGPSRK--- 420 (480)
Q Consensus 353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~---~~~~~~lr~l-----~~~g~Pil~G~SrK--- 420 (480)
| .+.+.++..++.++|+++++|++||+.+- +... ..+++.||++ +.+++|++.++++-
T Consensus 185 -----D-----ln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~ 254 (319)
T PRK04452 185 -----D-----INLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWK 254 (319)
T ss_pred -----H-----HHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhh
Confidence 1 24667888889999999999999998752 3333 3456666665 46899999888742
Q ss_pred ---ccccc----ccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHh
Q 038230 421 ---RFLGE----ICNRPSADERDPATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT 474 (480)
Q Consensus 421 ---sfi~~----v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~ 474 (480)
+.... -.|......-.+.+. .++..+.+|++|+-.|....++..-++.+.+..
T Consensus 255 ~kea~~~~~~~~~~g~~~~r~~~~E~~-~a~~~~~~ga~i~vm~hp~s~~~~~~~~~~l~~ 314 (319)
T PRK04452 255 AKEAWMPEEEDPEWGPREYRGILWEAV-TALTLLLAGADIFMMRHPESVKTLKEIIDTLMG 314 (319)
T ss_pred ccccccccccccccccchhccHHHHHH-HHHHHHHhcCcEEEEeCHHHHHHHHHHHHHHhc
Confidence 21100 001110012233444 355667799999999996655555555555554
No 23
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=99.78 E-value=2.9e-17 Score=164.82 Aligned_cols=242 Identities=15% Similarity=0.183 Sum_probs=169.2
Q ss_pred cccccccccccCC---CCCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHH----cCC-CEEEeCCCCC
Q 038230 195 KRVLPIGNLLWDW---SLKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMIS----EGA-DMIDIGAQST 258 (480)
Q Consensus 195 ~r~~~~~~~~~~~---~~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~----~GA-diIDIG~eSt 258 (480)
.+++.+++.+++. .-++.+.|-+ ||+|-+. +|.+.|-+..++|.+ -|- -++||=++
T Consensus 8 q~v~~i~g~kiGGqpGe~ptvL~gsi------FY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~-- 79 (308)
T PRK00979 8 QKVYDIGGVKIGGQPGEYPTVLIGSI------FYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGE-- 79 (308)
T ss_pred cEEEEECCEEECCCCCCCCceEEEEe------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecC--
Confidence 5678888888874 2357777744 6664332 566666666666554 243 37777653
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc-------CCCEEecCCCCCCCchHHHHHHh
Q 038230 259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK-------GAHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~-------G~~iINdVsg~~~d~~m~~l~~~ 331 (480)
|.+-+.+.|+.+++. +++|++|||++|+++++||++ |..|+|||++...+ +.++++++
T Consensus 80 -----------~~eam~k~I~~v~~~---~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~-eel~llk~ 144 (308)
T PRK00979 80 -----------SPEAMEKYIDFVSEI---TDLPFLIDSTSPEARIAAAKYATELGLADRAIYNSINPSIEE-EEIEALKE 144 (308)
T ss_pred -----------hHHHHHHHHHHHHhc---CCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEEeccCCCCH-HHHHHHHH
Confidence 233355566777776 589999999999999999997 48999999997644 66999999
Q ss_pred cCCC-EEEEcC-CCCCCccccccccchhhHHHHHHHHHHH--------HHHHHHHCCCCCCCEEEecCCCCccChhHHHH
Q 038230 332 LKVP-YVAMHM-RGDPSTMQNEENLQYDDVCKQVASELYS--------KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLD 401 (480)
Q Consensus 332 ~~~~-vVlmh~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~--------~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~ 401 (480)
||++ +|++.. .+.| |.++ ..+.+++ .++.|.++||+ +|++||++-...+....++
T Consensus 145 yg~aavIvLa~d~~~p-t~e~------------Rl~i~~~~~~~~~~gll~~a~~~GI~--diliDplVlpvs~~~~tl~ 209 (308)
T PRK00979 145 SDIKAAIVLAFDPMDP-SVEG------------RLKMLEEGGKGQDKGMLPLAEEAGIE--RPLVDTAVTPLPGSGAAIR 209 (308)
T ss_pred hCCceEEEEEcCCCCC-CHHH------------HHHHHHhccccchHHHHHHHHHcCCC--cEEeccCCCcCccHHHHHH
Confidence 9955 666554 4566 5443 4566777 79999999995 9999998866555677788
Q ss_pred HHHhcc-cCCCcEEEeeccccccccccCCC-CcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230 402 ILLGLA-ASHAPILIGPSRKRFLGEICNRP-SADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT 474 (480)
Q Consensus 402 ~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~-~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~ 474 (480)
.++.++ .+|+|+.+|+||.||-=.-+... .++.......++..++...|+|.+.- -+.+..-.|+.+++.+..
T Consensus 210 aI~~iK~~~G~pt~~GlSNiS~~w~~lk~~~~~~~~~~~d~~~~~~~~~~g~Df~lyGpIe~~~~~~pa~a~~d~~~~ 287 (308)
T PRK00979 210 AIFAVKAKFGYPVGCAPHNAPSAWDWLREFKGKEAFAVCDIGANLVARILGADFLLYGPIENAEEAFPAVAMTDIFIA 287 (308)
T ss_pred HHHHHHHHcCCCeEEEEeCCchHHHHHHHhcccccccccchHHHHHHHHhcCCeEEecccccchhhhHHHHHHHHHHH
Confidence 888774 46999999999999843222210 01112122345567788899998864 445667788888887643
No 24
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=99.55 E-value=4.6e-13 Score=137.62 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=152.0
Q ss_pred CCCcEEEEEEecC-CCCCCCCCccCCHHHHH----HHHHHHH-HcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 038230 208 SLKTSVMGILNLT-PDSFSDGGKFQSVEAAV----SQVRLMI-SEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV 281 (480)
Q Consensus 208 ~~~~~imGIlN~t-pDSFsdgg~~~~~e~a~----~~A~~~v-~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l 281 (480)
..+|.|-=-+--+ |+.+... .-.-++++. +.+++.+ +-|||.|-|-..|+.|....-|+++ ...+++.+
T Consensus 109 ~npp~ia~dV~D~~~~~~~~~-i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e----~a~~vk~V 183 (389)
T TIGR00381 109 PNPPVVTFDVFDIPMPGLPKP-IRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSE----AAKVLEDV 183 (389)
T ss_pred CCCCeEEEEEecCCccccHHH-HHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHH----HHHHHHHH
Confidence 3455554444444 5443331 111123344 6666666 7999999999999999654445433 33345666
Q ss_pred HcCCcCCCCeEEEe-----CCCHHHHHHHHHc--C-CCEEecCCCC-CCCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230 282 LTMPEMEGKLVSVD-----TFYSKVASEAVGK--G-AHIVNDVSAG-QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE 352 (480)
Q Consensus 282 ~~~~~~~~~pISID-----T~~~~v~~aaL~~--G-~~iINdVsg~-~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~ 352 (480)
.+. +++|+.|| +.+++|+++||+. | ..+||+++.. + -++|.++|++||+++|++.....
T Consensus 184 ~~a---v~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~N-y~~ia~lAk~yg~~Vvv~s~~Di-------- 251 (389)
T TIGR00381 184 LQA---VDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLD-YEKIANAAKKYGHVVLSWTIMDI-------- 251 (389)
T ss_pred HHh---CCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhh-HHHHHHHHHHhCCeEEEEcCCcH--------
Confidence 554 48999999 4599999999997 7 7999999976 4 48999999999999999874311
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhH---HHHHHHhc-----ccCCCcEEEeecccccc
Q 038230 353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEH---NLDILLGL-----AASHAPILIGPSRKRFL 423 (480)
Q Consensus 353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~---~~~~lr~l-----~~~g~Pil~G~SrKsfi 423 (480)
..+.+.-.++.++|+++++||+||+.+. +...+. +++.+|+. +.+++|+..++.+ .+-
T Consensus 252 ------------n~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~~~-~w~ 318 (389)
T TIGR00381 252 ------------NMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGTTN-AWG 318 (389)
T ss_pred ------------HHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccchh-hhh
Confidence 2344555567899999999999999854 444444 44555553 4689999998833 331
Q ss_pred cc-c------cCCCCcCccc--HHHHHHHHHHHHcCCcEEEcCChHHHHHHHHHHHHHHh
Q 038230 424 GE-I------CNRPSADERD--PATIASITAGVLGGANIVRVHNIRDNLDAVKLCDSMLT 474 (480)
Q Consensus 424 ~~-v------~g~~~~~~r~--~~t~a~~~~a~~~Ga~IlRvHdV~e~~~al~~~~ai~~ 474 (480)
-. . .| +.+.|. |....+ +-.+..|++|+.+.....++..-++.+.+.+
T Consensus 319 ~kEa~~~~~~wG--~~~~Rg~lwE~~ta-~~~~~aG~di~~m~HP~sv~~~k~~~~~l~~ 375 (389)
T TIGR00381 319 AREAWMVDSEWG--PREYRGPLWEIITG-LTMMLAGVDLFMMLHPVSVAVLKEIGNTLTG 375 (389)
T ss_pred heeeccCCCCCC--ChHHhchhhhHHHH-HHHHHcCCcEEEEeCHHHHHHHHHHHHHHhh
Confidence 00 0 01 123343 344443 3345589999998885555554455555543
No 25
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=99.31 E-value=6.2e-11 Score=119.43 Aligned_cols=216 Identities=20% Similarity=0.184 Sum_probs=147.0
Q ss_pred EecCCCCCCCCCccCCHHHHHHHHHHHHHc-----C----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC
Q 038230 217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISE-----G----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM 287 (480)
Q Consensus 217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~-----G----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~ 287 (480)
.|-|| =|+|=.--++.+++++++.+..+- | -|-+-|-..|.- .++...+++.+.+.
T Consensus 94 fNpt~-~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgd-----------pekfa~ave~v~~~--- 158 (467)
T COG1456 94 FNPTP-MFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGD-----------PEKFAEAVEKVAEA--- 158 (467)
T ss_pred eCCCc-eEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCC-----------HHHHHHHHHHHHhc---
Confidence 45555 455555567888999998776542 2 133444333322 35677788888876
Q ss_pred CCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230 288 EGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS 365 (480)
Q Consensus 288 ~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~ 365 (480)
+.|+.+-|++|+|+++||+.-.+.-.-+.+.+.+ .++++++.+|+|++|+...+ | .+
T Consensus 159 -~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~---------------d-----l~ 217 (467)
T COG1456 159 -GLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFN---------------D-----LD 217 (467)
T ss_pred -CCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccC---------------C-----HH
Confidence 7999999999999999999854433333444433 78999999999999995421 1 15
Q ss_pred HHHHHHHHHHHCCCCCCCEEEecCCCCc-cC---hhHHHHHHHhc------ccCCCcEEEeeccccccccccCCCCcCcc
Q 038230 366 ELYSKVRDAELSGIPAWRIIIDPGLGFS-KK---AEHNLDILLGL------AASHAPILIGPSRKRFLGEICNRPSADER 435 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~IilDPgiGf~-k~---~~~~~~~lr~l------~~~g~Pil~G~SrKsfi~~v~g~~~~~~r 435 (480)
.|......+.++||+ +|++|||.-++ +. ..+++..||+. +.+++|||.=.=.-+. +++..+....
T Consensus 218 ~lk~la~~~~~~Gi~--divLdPgT~p~~egl~~T~d~~v~iRr~aIe~~d~~~~yPim~~p~~~~~---~~~dd~V~a~ 292 (467)
T COG1456 218 DLKNLAVTYAQAGIK--DIVLDPGTYPGGEGLKDTFDNFVMIRRAAIEGFDKDFAYPIMALPFTAWM---FGEDDPVSAS 292 (467)
T ss_pred HHHHHHHHHHHcCCc--eEEecCCcccCccchhHHHHHHHHHHHHHhhccCccccceeeecchhhhh---hccCchHHHH
Confidence 567888889999998 99999998774 43 35566677775 3589999853221122 2222112334
Q ss_pred cHHHHHHHHHHHHcCCcEEEcCC--hHHHHHHHHHHHHHHh
Q 038230 436 DPATIASITAGVLGGANIVRVHN--IRDNLDAVKLCDSMLT 474 (480)
Q Consensus 436 ~~~t~a~~~~a~~~Ga~IlRvHd--V~e~~~al~~~~ai~~ 474 (480)
.+.+.. ++.++.+.+||+..|. ..+++..+.+.+.||.
T Consensus 293 ~~Ea~i-As~~~~rYaDilI~~~~e~w~~mPvltlrq~iYT 332 (467)
T COG1456 293 YWEAVI-ASTFMNRYADILILHSLEPWALMPVLTLRQCIYT 332 (467)
T ss_pred HHHHHH-HHHHHHhhcceEEecccchhhhcchhhhhhhccc
Confidence 444443 5678888999888886 5568999999999884
No 26
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=99.12 E-value=7.8e-10 Score=114.62 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=122.7
Q ss_pred HHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc---CCCEE
Q 038230 239 QVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK---GAHIV 313 (480)
Q Consensus 239 ~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~---G~~iI 313 (480)
.|++-+.+ |||.|-+=..|+.| .++...+++.+.+. +++|+.|-+.+++++++|+++ ...+|
T Consensus 59 wak~rVge~~~~D~Ialr~~S~DP----------ae~fa~~vk~V~~a---~~~PLIL~~~D~evl~aale~~~~~kpLL 125 (386)
T PF03599_consen 59 WAKKRVGEFLGADMIALRLESGDP----------AEEFAKAVKKVAEA---VDVPLILCGCDPEVLKAALEACAGKKPLL 125 (386)
T ss_dssp HHHHCCCEEEE-SEEEEE-GGGST----------HHHHHHHHHHHHHC----SSEEEEESSHHHHHHHHHHHTTTS--EE
T ss_pred hhhhhhhhhccccEEEEEecCCCh----------HHHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHhCcCCcEE
Confidence 44555554 99999999988887 33455567777776 589999999999999999997 47899
Q ss_pred ecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-
Q 038230 314 NDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF- 392 (480)
Q Consensus 314 NdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf- 392 (480)
...+..+ -++|.++|++|++++++... .+ .+.+.++..++.+.|++ +|++|||.+-
T Consensus 126 ~aAt~eN-yk~m~~lA~~y~~pl~v~sp----~D----------------ln~lk~Ln~~l~~~Gv~--dIVlDpgt~~l 182 (386)
T PF03599_consen 126 YAATEEN-YKAMAALAKEYGHPLIVSSP----ID----------------LNLLKQLNIKLTELGVK--DIVLDPGTRAL 182 (386)
T ss_dssp EEEBTTT-HHHHHHHHHHCT-EEEEE-S----SC----------------HHHHHHHHHHHHTTT-G--GEEEE---SST
T ss_pred eEcCHHH-HHHHHHHHHHcCCeEEEEec----cc----------------HHHHHHHHHHHHhcCcc--cEEecCCcccc
Confidence 9998765 48999999999999998542 11 15567888888999995 9999999765
Q ss_pred ccChh---HHHHHHHhc-----ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCCh--HHH
Q 038230 393 SKKAE---HNLDILLGL-----AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNI--RDN 462 (480)
Q Consensus 393 ~k~~~---~~~~~lr~l-----~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV--~e~ 462 (480)
|...+ ++++.||+. +.+++|++. ++...+ +. + ...+ ...+.+|++|+-.|+. .++
T Consensus 183 GyGie~t~s~~~rIRraALk~Dr~lgyPiI~-~~~~aw-----~~-----~--e~~~--~~~i~kYa~IiVl~~~~~~~~ 247 (386)
T PF03599_consen 183 GYGIEYTYSNMERIRRAALKGDRPLGYPIIT-FPTEAW-----KA-----K--EADA--VAFIAKYASIIVLHDMEPWEL 247 (386)
T ss_dssp TTTHHHHHHHHHHHHHHHHHT-GGG-S-BEE-CHHHCT-----CC-----H--HHHH--HHHHHTT-SEEEES---HHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccCcccCCceee-cchhcc-----ch-----h--HHHH--HHHHHhhCcEEEEcCCCHHHH
Confidence 55554 445556664 568999864 432222 11 1 1111 1167899999999984 458
Q ss_pred HHHHHHHHHHHh
Q 038230 463 LDAVKLCDSMLT 474 (480)
Q Consensus 463 ~~al~~~~ai~~ 474 (480)
...+.+.+.||.
T Consensus 248 lpll~lR~niyT 259 (386)
T PF03599_consen 248 LPLLTLRQNIYT 259 (386)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHhhccC
Confidence 888888888874
No 27
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=98.76 E-value=6e-07 Score=89.59 Aligned_cols=248 Identities=18% Similarity=0.208 Sum_probs=157.7
Q ss_pred cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHcC-----CCEEEeCCCCC
Q 038230 195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISEG-----ADMIDIGAQST 258 (480)
Q Consensus 195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~G-----AdiIDIG~eSt 258 (480)
++++.+++.+++.. -+|.+.|-+ ||+|-+. +|.+.|-+..++|.+.. -.++||=++|
T Consensus 3 Q~V~~i~gvkiGGQPGE~PtvL~GSI------FY~gHkIV~D~~~G~FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s- 75 (296)
T PF02007_consen 3 QKVYDIGGVKIGGQPGEYPTVLIGSI------FYNGHKIVEDEKKGIFDKEAAEALINRQEELSDETGNPCIVDIVAES- 75 (296)
T ss_pred cEEEEECCEEECCCCCCCCceEEEee------eecCceeeeccCCCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence 34667777777642 347777744 6665433 57777777777776643 3678886654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230 259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~ 331 (480)
.|.+.+.+..+ .+. ++.|+-|||..+++-.+|+++ | ..|-|||+... +++=++.+++
T Consensus 76 ---------~EA~~kYidFv---~~i---~d~PfliDS~~~~~R~~a~~yv~E~Gl~dR~IYNSIn~~~-~~~EieaLke 139 (296)
T PF02007_consen 76 ---------PEAMEKYIDFV---AEI---TDSPFLIDSSSPEVRIAAAKYVTEIGLADRAIYNSINMSI-EDEEIEALKE 139 (296)
T ss_pred ---------HHHHHHHHHHH---hhc---CCCCeEecCCCHHHHHHHHHHHhhhchhhhhhhhcCCCCC-CHHHHHHHHh
Confidence 36677776666 443 478999999999999999986 4 66999999876 4566788899
Q ss_pred cCC--CEEEEcCCCCCCccccccccchhhHHHHHHHHH-HHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230 332 LKV--PYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL-YSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL- 406 (480)
Q Consensus 332 ~~~--~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l-~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l- 406 (480)
+++ .+|+-.+..+|.. +.+ -+++++...-. +-.++.|+++||+ ++++||+.-- +...-..++.+..+
T Consensus 140 s~i~aaIvLaFn~~d~s~-~gr-----~~~le~~~~~~~kgll~~a~e~GI~--~~LvD~~v~plgsg~g~s~r~~~~vK 211 (296)
T PF02007_consen 140 SDIDAAIVLAFNPMDPSV-EGR-----IEMLENGGGGQDKGLLDIAEECGIE--NPLVDTAVTPLGSGAGISIRAIFAVK 211 (296)
T ss_pred cCCCEEEEEecCCCCCCh-hhh-----HHHHhccCcccccchHHHHHHcCCc--ceeecccccCCcccchHHHHHHHHHH
Confidence 874 5666565555532 221 12222221111 2357889999998 9999998754 22233334443333
Q ss_pred ccCCCcEEEeeccccc----cccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230 407 AASHAPILIGPSRKRF----LGEICNRPSADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT 474 (480)
Q Consensus 407 ~~~g~Pil~G~SrKsf----i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~ 474 (480)
..+|+|+=+|.+|-.. +.+.-+. ..+......+.+..++...|+|++.- -+.+..-.|+.|++.++.
T Consensus 212 ~~~G~P~G~a~hN~~s~W~wlr~~~k~-~~~~~~~~di~~~~~~~~~g~DFilYGPIena~~vfpA~a~~Di~~a 285 (296)
T PF02007_consen 212 AKFGYPVGCAIHNAPSAWKWLREYKKK-EGEKFAVCDIGANLMQIILGADFILYGPIENAPYVFPAVAMADIMIA 285 (296)
T ss_pred HHhCCCcccccccchhHHHHHHHhccc-ccccccccchHHHHHHHHhcCCeEEecccccchhhhHHHHHHHHHHH
Confidence 3589999999998522 2222111 11111122345567788899998864 456668888888888753
No 28
>PRK14047 putative methyltransferase; Provisional
Probab=98.47 E-value=1.6e-05 Score=79.68 Aligned_cols=247 Identities=17% Similarity=0.174 Sum_probs=154.3
Q ss_pred cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHc-----CCCEEEeCCCCC
Q 038230 195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISE-----GADMIDIGAQST 258 (480)
Q Consensus 195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~-----GAdiIDIG~eSt 258 (480)
++++.+++.+++.. -++.+.|-+ ||+|-.. +|.+.|-+...+|.+. --.++||=++|
T Consensus 8 Q~v~~iggvkiGGqPGE~PtvL~GsI------FY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~TGnp~~~~I~g~t- 80 (310)
T PRK14047 8 QEIFNIAGVKFGGQPGELPTVLAGTI------FYNRHKIVTDEDKGLFDREAAEKLVNLQEEMSDETGNPCVVHIFGTT- 80 (310)
T ss_pred cEEEEECCEEECCcCCCCcceEEEEE------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence 45678888877642 346677744 5554322 5666666666666553 23577876654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230 259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~ 331 (480)
+|.+.+.+..+ .+. ++.|+-|||+.+++=.+|+++ | ..|-|||+... +++=++.+++
T Consensus 81 ---------~EA~~kYidfv---~ei---~d~PfliDS~~~~~R~aa~~yv~E~GladR~IYNSIn~s~-~~~EieaL~~ 144 (310)
T PRK14047 81 ---------PEAITNYIDFF---SEV---TDSPFLIDSPEGEVRAAAAEYVTEIGLADRAIYNSINMSI-HESEIEALKQ 144 (310)
T ss_pred ---------HHHHHHHHHHH---hhc---cCCCeEecCCCHHHHHHHHhhhhhhchhHHHHHhhcCccC-CHHHHHHHHh
Confidence 35566665555 444 478999999999999999986 4 66999999876 5666788888
Q ss_pred cC--CCEEEEcCCCCCCccccccccchhhHHHHHHHHH-HHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230 332 LK--VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL-YSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL- 406 (480)
Q Consensus 332 ~~--~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l-~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l- 406 (480)
++ +.+|+-.+.++| +++.+ -+++++.-.-. +-.++.|+++||+ ++++||+.-. |.+.-..++.+-..
T Consensus 145 sdi~aaIiLaFn~~d~-sv~gr-----~~~le~gg~~~~~gll~~ae~~GI~--~~liD~avtplg~g~g~a~r~~~avK 216 (310)
T PRK14047 145 SDIDSSIVLGFNAMDS-SLKGR-----MEMLETGGGLLEKGLLEIADDCGIT--NILIDPSITPMGNGAGIALRMTIAAK 216 (310)
T ss_pred cCCCeEEEEecCCCCC-CHHHH-----HHHHHhcCccccccHHHHHHHcCCC--ceeecccccCCCCCccHHHHHHHHHH
Confidence 87 456665555555 22222 11211110000 1368899999998 9999997643 34443434443333
Q ss_pred ccCCCcEEEeecccc----ccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHH
Q 038230 407 AASHAPILIGPSRKR----FLGEICNRPSADERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSML 473 (480)
Q Consensus 407 ~~~g~Pil~G~SrKs----fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~ 473 (480)
..+|+|+=.|.+|-. |+.+. .+..+.--......+..++...|+|.+.- .+.+..-.|+.|++.+.
T Consensus 217 ~~~G~PvG~g~hN~~saW~wlk~~-~k~~~~~~~~~digan~~~~~~g~DFvlYGPIEna~~~fpA~am~D~~i 289 (310)
T PRK14047 217 AKWGLPVGSGIHNAPSAWNWLKDK-KEKDPLVYKMCDIGSTCMQQAAGGDFVLYGPIENAPYVFPMAAMSDIMI 289 (310)
T ss_pred HHhCCCcCcccccCchHhHHHHHh-cccCCcceecccHHHHHHHHHhcCCeEEeccccccchhhHHHHHHHHHH
Confidence 257999999998863 33321 10011111112245566778899998864 45566788888888864
No 29
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=98.37 E-value=3.4e-05 Score=77.57 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=153.0
Q ss_pred cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHc-----CCCEEEeCCCCC
Q 038230 195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISE-----GADMIDIGAQST 258 (480)
Q Consensus 195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~-----GAdiIDIG~eSt 258 (480)
+.++.+++.+++.. -++.+.|-+ ||++-+. +|.+.|-+...+|.+- ---++||=++|
T Consensus 8 Q~v~~iggvkiGGqPGE~PtvL~GSI------FY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~tGnp~~~qI~~~t- 80 (314)
T TIGR01114 8 QEVFEIAGVKIGGQPGEYPTVLAGTI------FYARHKIVEDEDKGIFDKAAAETLIKTQEELSDATGNPYVVQIFGET- 80 (314)
T ss_pred eEEEEECCEEECCcCCCCCceEEEEE------eecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-
Confidence 56678888877642 346677744 5554322 5666676666666553 23578887654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHh
Q 038230 259 RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 259 rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~ 331 (480)
.|.+.+.+..+ .+. ++.|+-|||+.+++=-+|+++ | ..|-|||+... +++=++.+++
T Consensus 81 ---------~EA~~kYidfv---~~i---~d~PfliDS~~~~~r~aa~ky~~E~GladR~IYNSIn~s~-~~eEieaL~e 144 (314)
T TIGR01114 81 ---------PEAIVRYIDWV---ADI---TDAPFLIDSTSGEARAAAAKYATEVGLADRAIYNSINASI-EEEEIQVLKE 144 (314)
T ss_pred ---------HHHHHHHHHHH---hcc---cCCCeEecCCcHHHHHHHhhhhhhhchHHHHHHhhcCccC-CHHHHHHHHh
Confidence 35576665555 444 478999999999999999986 4 56999999876 5666788888
Q ss_pred cC--CCEEEEcCCCCCCccccccccchhhHHHHHHH-HHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230 332 LK--VPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS-ELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL- 406 (480)
Q Consensus 332 ~~--~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~-~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l- 406 (480)
++ +++|+-.+.++|. .+.+ -+++++.-. .-+-.+..|+++||+ +.++||+.-. +.+.-..++.+-..
T Consensus 145 sdi~aaIiLaFnp~dps-v~gr-----~~~l~~gg~~~~~gll~~ae~~GI~--~pliD~avtplg~g~g~a~r~~~a~K 216 (314)
T TIGR01114 145 SDLSAAIVLAFNPMDPT-VEGK-----IDILEVGGGTSDKGMLEIAEECGIK--YPLIDVAVTPLGAGAGAAVRSSFAVK 216 (314)
T ss_pred cCCCeEEEEecCCCCCC-HHHH-----HHHHHhcCccccccHHHHHHHcCCC--ceeecccccCCCCCccHHHHHHHHHH
Confidence 87 4566655555552 2221 111111100 002368899999998 9999997643 34333333222222
Q ss_pred ccCCCcEEEeecccc----cccccc-CCCCcCcc-cHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHH
Q 038230 407 AASHAPILIGPSRKR----FLGEIC-NRPSADER-DPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSML 473 (480)
Q Consensus 407 ~~~g~Pil~G~SrKs----fi~~v~-g~~~~~~r-~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~ 473 (480)
..+|+|+=.|.+|-. |+.+.- +.++..+. ......+..++...|+|.+.- -+.+..-.|+.|++.+.
T Consensus 217 ~k~G~PvG~g~hN~~saW~wlk~~~k~~~~~~~~~~~~digan~~~~~~G~DfvlYGPIen~~~~fpAvAm~D~~i 292 (314)
T TIGR01114 217 AKFGLPVGGGIHNVPSAWDWLREFKKTLKEAGAIHMVCDVGSNLVAQMAGGDYLLYGPIENANMIFPAVAMVDIMI 292 (314)
T ss_pred HHhCCCcCcccccCchHHHHHHHhhhccccccceeccccHHHHHHHHHhcCCEEEecccccchhhhHHHHHHHHHH
Confidence 258999999998863 333321 10000111 012345566778899998864 45666788888888864
No 30
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=97.98 E-value=0.00012 Score=73.09 Aligned_cols=194 Identities=20% Similarity=0.239 Sum_probs=123.7
Q ss_pred HHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-----CCHHHHHHHHHc
Q 038230 235 AAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-----FYSKVASEAVGK 308 (480)
Q Consensus 235 ~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-----~~~~v~~aaL~~ 308 (480)
+-.+.|++.++ -|||++-|-.-||.|.-...+++|-.+.+..++ |.. ++||.|-- -+|+|+++|.+.
T Consensus 151 dP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvL---qAV----dvPiiiGGSGnpeKDpeVlekaAEv 223 (403)
T COG2069 151 DPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVL---QAV----DVPIIIGGSGNPEKDPEVLEKAAEV 223 (403)
T ss_pred CHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHH---Hhc----CcCEEecCCCCCccCHHHHHHHHHh
Confidence 34567888776 799999999999999888888888787776665 332 78999854 479999999886
Q ss_pred --C-CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230 309 --G-AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385 (480)
Q Consensus 309 --G-~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii 385 (480)
| ..++-|.+-...-+++++.|++|+-.|.--. .=+ .+|| +++=+++.+.|+++++|+
T Consensus 224 aEGeRclLaSanldlDy~~ia~AA~ky~H~VLswt-~~D-~N~q------------------k~LNrkllk~gl~r~~IV 283 (403)
T COG2069 224 AEGERCLLASANLDLDYERIAEAALKYDHVVLSWT-QMD-VNMQ------------------KTLNRKLLKRGLPRDRIV 283 (403)
T ss_pred hcCceEEeeccccccCHHHHHHHHHhcCceEEEee-ccC-hHHH------------------HHHHHHHHHccCChhhee
Confidence 5 6677777754322889999999996555322 101 1111 233456778999999999
Q ss_pred Eec---CCCCccC-hhHHHHHHHh--c---ccCCCcEEEeecc-----ccccccc-cCCCCcCcc--cHHHHHHHHHHHH
Q 038230 386 IDP---GLGFSKK-AEHNLDILLG--L---AASHAPILIGPSR-----KRFLGEI-CNRPSADER--DPATIASITAGVL 448 (480)
Q Consensus 386 lDP---giGf~k~-~~~~~~~lr~--l---~~~g~Pil~G~Sr-----Ksfi~~v-~g~~~~~~r--~~~t~a~~~~a~~ 448 (480)
.|| .+|+|-. ...|++-+|- | ..+.+|+--|..| -+|..+- -| | -+=| +|......+ .+.
T Consensus 284 MDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAwgaREaWM~~~~WG-P-reyRgPlWEivTglT-~~l 360 (403)
T COG2069 284 MDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAWGAREAWMVDSEWG-P-REYRGPLWEIVTGLT-LAL 360 (403)
T ss_pred eccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchhhhhHHhhcCCCCC-c-hhccccHHHHHhhHH-HHH
Confidence 999 2444322 1234444443 2 3578898888653 3332210 01 1 0112 344443333 344
Q ss_pred cCCcEEEcCC
Q 038230 449 GGANIVRVHN 458 (480)
Q Consensus 449 ~Ga~IlRvHd 458 (480)
.|+|++-...
T Consensus 361 ~GvDlfMM~h 370 (403)
T COG2069 361 AGVDLFMMMH 370 (403)
T ss_pred hccchhhhhC
Confidence 8999766554
No 31
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.97 E-value=0.00041 Score=68.62 Aligned_cols=156 Identities=12% Similarity=0.239 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH--------------HHHHHHHHHHcCCcCCCCeEEEe
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE--------------RLIPVLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~--------------rl~~vi~~l~~~~~~~~~pISID 295 (480)
|-+.+...+.++.+.++|||+|.+|...+.|-++ -..++ .....++.+++. .++|+.+=
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~D----G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~---~~~pv~lm 82 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVAD----GPVIQAASERALANGVTLKDVLELVKEIRKK---NTIPIVLM 82 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc---CCCCEEEE
Confidence 4577889999999999999999999866555443 23333 566788888865 36787776
Q ss_pred CC-C-------HHHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230 296 TF-Y-------SKVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS 365 (480)
Q Consensus 296 T~-~-------~~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~ 365 (480)
|| + .+-++.+.++|++ ++.|...+ ...++++.++++|...+++-...+| .
T Consensus 83 ~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~e-e~~~~~~~~~~~g~~~i~~i~P~T~---~---------------- 142 (242)
T cd04724 83 GYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPE-EAEEFREAAKEYGLDLIFLVAPTTP---D---------------- 142 (242)
T ss_pred EecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHH-HHHHHHHHHHHcCCcEEEEeCCCCC---H----------------
Confidence 66 6 4567778888987 55666532 2357899999999988876543222 1
Q ss_pred HHHHHHHHHHHCCCCCCCEEE---ecCCCCccC-hhHHHHHHHhcc-cCCCcEEEee
Q 038230 366 ELYSKVRDAELSGIPAWRIII---DPGLGFSKK-AEHNLDILLGLA-ASHAPILIGP 417 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k~-~~~~~~~lr~l~-~~g~Pil~G~ 417 (480)
++++...+.... -|++ .|++|-.+. .....+.+++++ ..++|+++|-
T Consensus 143 ---~~i~~i~~~~~~--~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vgg 194 (242)
T cd04724 143 ---ERIKKIAELASG--FIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGF 194 (242)
T ss_pred ---HHHHHHHhhCCC--CEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEc
Confidence 222233232221 3454 788774332 233345566653 4689999985
No 32
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.85 E-value=0.0023 Score=66.33 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=116.3
Q ss_pred EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230 216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQSTRPMATKISAEKELERLIPVLEAVLTMPEME 288 (480)
Q Consensus 216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~ 288 (480)
|+..| .|-.+--+..++.++.++.+..+.+.|.++|++| +.|-..|....+..+.+++ +.+.+.+ .
T Consensus 5 i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~---~~~~~~~----~ 77 (333)
T TIGR03217 5 ITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEA---AADVVKR----A 77 (333)
T ss_pred EEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHH---HHHhCCC----C
Confidence 44555 4544444556899999999999999999999996 3444445555555444444 4443332 1
Q ss_pred CCeEEEe--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHH
Q 038230 289 GKLVSVD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQV 363 (480)
Q Consensus 289 ~~pISID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev 363 (480)
.+-..++ ..+.+-++.|.+.|+++|.=....+.. .+.++.+++.|..++...+.....+
T Consensus 78 ~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~---------------- 141 (333)
T TIGR03217 78 KVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTP---------------- 141 (333)
T ss_pred EEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCC----------------
Confidence 2322332 135788999999999999855443321 4688889999987764332211100
Q ss_pred HHHHHHHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhcc-cCC--CcEEEeeccccccccccCCCCcCcccHH
Q 038230 364 ASELYSKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGLA-ASH--APILIGPSRKRFLGEICNRPSADERDPA 438 (480)
Q Consensus 364 ~~~l~~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l~-~~g--~Pil~G~SrKsfi~~v~g~~~~~~r~~~ 438 (480)
.+++.+.++.+.++|.. .|. .|. |..... +-.++++.++ .++ .|+ |+= . .+-...
T Consensus 142 ~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~---~v~~~v~~l~~~l~~~i~i--g~H-------~------HnnlGl 201 (333)
T TIGR03217 142 PEKLAEQAKLMESYGAD--CVYIVDSAGAMLPD---DVRDRVRALKAVLKPETQV--GFH-------A------HHNLSL 201 (333)
T ss_pred HHHHHHHHHHHHhcCCC--EEEEccCCCCCCHH---HHHHHHHHHHHhCCCCceE--EEE-------e------CCCCch
Confidence 15667888888899986 443 466 332333 3344444442 233 444 331 0 112223
Q ss_pred HHHHHHHHHHcCCcEEEcC
Q 038230 439 TIASITAGVLGGANIVRVH 457 (480)
Q Consensus 439 t~a~~~~a~~~Ga~IlRvH 457 (480)
..+-+..|++.||+.+.+.
T Consensus 202 a~ANslaAi~aGa~~iD~S 220 (333)
T TIGR03217 202 AVANSIAAIEAGATRIDAS 220 (333)
T ss_pred HHHHHHHHHHhCCCEEEee
Confidence 3344555777888876553
No 33
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=97.78 E-value=0.0082 Score=65.83 Aligned_cols=237 Identities=18% Similarity=0.176 Sum_probs=152.9
Q ss_pred cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230 195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL 274 (480)
Q Consensus 195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl 274 (480)
.+...+|+..++.+.+..|=--.|.. -.|.++.+++++++.++|++++=+-. |+ .+|.+.+
T Consensus 11 Tr~V~vG~v~iGg~~PI~vQSMt~t~---------T~D~~atv~Qi~~l~~aGceiVRvtv----~~------~~~a~~l 71 (611)
T PRK02048 11 TSVVNIGATPLGGPNPIRIQSMTNTS---------TMDTEACVAQAKRIIDAGGEYVRLTT----QG------VREAENL 71 (611)
T ss_pred ceEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhH
Confidence 34467788888776555544444433 37899999999999999999999965 32 4677777
Q ss_pred HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCC---------------------------chHH
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLD---------------------------PDMY 326 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d---------------------------~~m~ 326 (480)
..+.+.+++.- .++|+.-|- |+|.++.+|+++ ++=|- |+.++.- ..++
T Consensus 72 ~~I~~~l~~~G--~~iPLVADIHF~~~~A~~a~~~-v~kiR-INPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v 147 (611)
T PRK02048 72 MNINIGLRSQG--YMVPLVADVHFNPKVADVAAQY-AEKVR-INPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFL 147 (611)
T ss_pred HHHHHHHhhcC--CCCCEEEecCCCcHHHHHHHHh-hCCEE-ECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHH
Confidence 77777776542 478999995 899999999997 44322 2233221 1278
Q ss_pred HHHHhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHh
Q 038230 327 KVVAGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 327 ~l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~ 405 (480)
+.|+++|+++=+=-+.|. ++.. -..|.+..+.+.+...+-++.+++.|+. +|++=-= +.+..+.+...|.
T Consensus 148 ~~ak~~~~~iRIGvN~GSL~~~i----~~~yg~tpe~mVeSAle~~~i~e~~~f~--diviS~K---sS~~~~~V~AyRl 218 (611)
T PRK02048 148 NICKENHTAIRIGVNHGSLSDRI----MSRYGDTPEGMVESCMEFLRICVEEHFT--DVVISIK---ASNTVVMVRTVRL 218 (611)
T ss_pred HHHHHCCCCEEEecCCcCchHHH----HHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEEEEE---eCCcHHHHHHHHH
Confidence 888999999887665553 2222 1235666777888888999999999997 8887531 1222333444444
Q ss_pred c------ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCCh----HHHHHHHHHHHHH
Q 038230 406 L------AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHNI----RDNLDAVKLCDSM 472 (480)
Q Consensus 406 l------~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHdV----~e~~~al~~~~ai 472 (480)
+ +...+|+.+|++-- |.. ..-+.- +++-...++..| .|-||+.-. .|..-|..+.++.
T Consensus 219 La~~l~~~g~dyPLHLGvTEA-------G~~-edg~IK-SAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~ 287 (611)
T PRK02048 219 LVAVMEAEGMHYPLHLGVTEA-------GDG-EDGRIK-SAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYI 287 (611)
T ss_pred HHHHHHhcCCCCceEEEEecC-------CCC-cCceeh-hHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHH
Confidence 4 23589999998622 222 112332 333334455566 788898773 3444444444444
No 34
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=97.77 E-value=0.003 Score=65.21 Aligned_cols=234 Identities=17% Similarity=0.253 Sum_probs=143.5
Q ss_pred ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230 198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV 277 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v 277 (480)
..+|+..++.+.+..|=--.| || -.|.+..+++.+++.++|++++=+-.. ..++.+-+..+
T Consensus 4 V~VG~v~IGG~~PI~VQSMt~-t~--------t~Dv~atv~QI~~L~~aGceivRvavp----------~~~~a~al~~I 64 (359)
T PF04551_consen 4 VRVGNVPIGGGAPISVQSMTN-TD--------TRDVEATVAQIKRLEEAGCEIVRVAVP----------DMEAAEALKEI 64 (359)
T ss_dssp EEETTEEESTTS--EEEEE---S---------TT-HHHHHHHHHHHHHCT-SEEEEEE-----------SHHHHHHHHHH
T ss_pred EEEcCEeecCCCCEEEEecCC-CC--------cccHHHHHHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHH
Confidence 456777777766655555566 44 478999999999999999999999652 24666667666
Q ss_pred HHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCC-----------C---chHHHHHHhcCCCEEEEcCC
Q 038230 278 LEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQL-----------D---PDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 278 i~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~-----------d---~~m~~l~~~~~~~vVlmh~~ 342 (480)
.+.|++.. +++|+.-|- |++..+.+|+++ ++-|- |+.++. + .++++.|+++++|+=+=-+.
T Consensus 65 ~~~l~~~g--~~iPlVADIHFd~~lAl~a~~~-v~kiR-INPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~ 140 (359)
T PF04551_consen 65 KKRLRALG--SPIPLVADIHFDYRLALEAIEA-VDKIR-INPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNS 140 (359)
T ss_dssp HHHHHCTT---SS-EEEEESTTCHHHHHHHHC--SEEE-E-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEG
T ss_pred HHhhccCC--CCCCeeeecCCCHHHHHHHHHH-hCeEE-ECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEeccc
Confidence 77777653 479999995 899999999999 77554 444443 1 36889999999998765444
Q ss_pred C-CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccc
Q 038230 343 G-DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRK 420 (480)
Q Consensus 343 g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrK 420 (480)
| .++.+.+ .|.+..+.+.+...+.++.+++.|+. +|++=- =+.+....++..|.+ +..+||+-+|+.
T Consensus 141 GSL~~~~~~----ky~~t~~amvesA~~~~~~le~~~f~--~iviSl---KsSdv~~~i~ayr~la~~~dyPLHLGvT-- 209 (359)
T PF04551_consen 141 GSLEKDILE----KYGPTPEAMVESALEHVRILEELGFD--DIVISL---KSSDVPETIEAYRLLAERMDYPLHLGVT-- 209 (359)
T ss_dssp GGS-HHHHH----HHCHHHHHHHHHHHHHHHHHHHCT-G--GEEEEE---EBSSHHHHHHHHHHHHHH--S-EEEEBS--
T ss_pred ccCcHHHHh----hccchHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EeCChHHHHHHHHHHHHhcCCCeEEeec--
Confidence 4 3444332 24566677788888999999999996 888754 123344445555555 457899999974
Q ss_pred cccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230 421 RFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM 472 (480)
Q Consensus 421 sfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai 472 (480)
+-....+-..-+.+....++..| .|-+||- | +.|..-+..+.+++
T Consensus 210 -------EAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~p~~EV~va~~IL~al 259 (359)
T PF04551_consen 210 -------EAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGDPVEEVKVAFEILQAL 259 (359)
T ss_dssp -------SEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSSCCCHHHHHHHHHHHT
T ss_pred -------CCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCCchHHHHHHHHHHHHh
Confidence 21111222222344445556667 6888872 2 55565555555554
No 35
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.76 E-value=0.0041 Score=62.12 Aligned_cols=199 Identities=17% Similarity=0.121 Sum_probs=113.1
Q ss_pred EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCC------CCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230 216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQST------RPMATKISAEKELERLIPVLEAVLTMPEME 288 (480)
Q Consensus 216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eSt------rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~ 288 (480)
|+..| .|-.+--+..++.++.++.++.+.+.|.++|++|..+. .-+....++.|.++++. +...
T Consensus 3 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~---~~~~------ 73 (263)
T cd07943 3 IHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAA---EALK------ 73 (263)
T ss_pred EEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHH---Hhcc------
Confidence 34455 45555455668999999999999999999999994321 11112233334444432 2222
Q ss_pred CCeEEE----eCCCHHHHHHHHHcCCCEEecCCCCCC---CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHH
Q 038230 289 GKLVSV----DTFYSKVASEAVGKGAHIVNDVSAGQL---DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCK 361 (480)
Q Consensus 289 ~~pISI----DT~~~~v~~aaL~~G~~iINdVsg~~~---d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ 361 (480)
+..++. .-.+.+-++.|++.|+++|+-....+. -.++++.+++.|..+.+..+....-+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~-------------- 139 (263)
T cd07943 74 QAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMAS-------------- 139 (263)
T ss_pred CCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCC--------------
Confidence 233332 234578899999999998875443321 14578888888877665433211110
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHH
Q 038230 362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPAT 439 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t 439 (480)
.+++.+.++++.+.|.+ .|.+ |. +|. -++.+-.++++.++ ..+. +-+|+ +. .+..+..
T Consensus 140 --~~~~~~~~~~~~~~G~d--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~~-~~l~~-------H~------Hn~~GlA 199 (263)
T cd07943 140 --PEELAEQAKLMESYGAD--CVYVTDS-AGA-MLPDDVRERVRALREALDP-TPVGF-------HG------HNNLGLA 199 (263)
T ss_pred --HHHHHHHHHHHHHcCCC--EEEEcCC-CCC-cCHHHHHHHHHHHHHhCCC-ceEEE-------Ee------cCCcchH
Confidence 14566777888889986 5544 44 222 22334445555552 3333 23333 11 1222333
Q ss_pred HHHHHHHHHcCCcEEEcC
Q 038230 440 IASITAGVLGGANIVRVH 457 (480)
Q Consensus 440 ~a~~~~a~~~Ga~IlRvH 457 (480)
.|-+..|++.|++++.+.
T Consensus 200 ~AN~laAi~aGa~~vd~s 217 (263)
T cd07943 200 VANSLAAVEAGATRIDGS 217 (263)
T ss_pred HHHHHHHHHhCCCEEEee
Confidence 344456778899988764
No 36
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.75 E-value=0.0044 Score=64.32 Aligned_cols=197 Identities=17% Similarity=0.120 Sum_probs=115.7
Q ss_pred EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC------CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230 216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG------AQSTRPMATKISAEKELERLIPVLEAVLTMPEME 288 (480)
Q Consensus 216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG------~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~ 288 (480)
|+..| .|-++--+..++.++.++.++.+.+.|.++|++| +.|-..+....+..|.++++ .+.+.
T Consensus 6 I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~---~~~~~------ 76 (337)
T PRK08195 6 ISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAA---AEVVK------ 76 (337)
T ss_pred EEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHH---HHhCC------
Confidence 56666 5655555666899999999999999999999997 22332244445543433333 22222
Q ss_pred CCeEE--Ee--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHH
Q 038230 289 GKLVS--VD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCK 361 (480)
Q Consensus 289 ~~pIS--ID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ 361 (480)
+..++ ++ ..+.+-++.|.+.|+++|.=....+.. .+.++.+++.|..+.+..+.. +.. +
T Consensus 77 ~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~-------~------ 142 (337)
T PRK08195 77 QAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMA-------P------ 142 (337)
T ss_pred CCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCC-------C------
Confidence 23333 32 235788999999999988744333321 457888888887776533321 100 0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhc-ccC--CCcEEEeeccccccccccCCCCcCccc
Q 038230 362 QVASELYSKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGL-AAS--HAPILIGPSRKRFLGEICNRPSADERD 436 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l-~~~--g~Pil~G~SrKsfi~~v~g~~~~~~r~ 436 (480)
.+++.+.++.+.++|.. .|. .|. |.... .+-.++++.+ +.+ +.|+ |+= + .+-.
T Consensus 143 --~e~l~~~a~~~~~~Ga~--~i~i~DT~G~~~P---~~v~~~v~~l~~~l~~~i~i--g~H---------~----Hnnl 200 (337)
T PRK08195 143 --PEKLAEQAKLMESYGAQ--CVYVVDSAGALLP---EDVRDRVRALRAALKPDTQV--GFH---------G----HNNL 200 (337)
T ss_pred --HHHHHHHHHHHHhCCCC--EEEeCCCCCCCCH---HHHHHHHHHHHHhcCCCCeE--EEE---------e----CCCc
Confidence 15667888888899986 554 465 33233 3334455554 223 4444 321 0 1222
Q ss_pred HHHHHHHHHHHHcCCcEEEcC
Q 038230 437 PATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 437 ~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+...|-+..|++.||+++.+.
T Consensus 201 Gla~ANslaAi~aGa~~iD~S 221 (337)
T PRK08195 201 GLGVANSLAAVEAGATRIDGS 221 (337)
T ss_pred chHHHHHHHHHHhCCCEEEec
Confidence 334444556778888876653
No 37
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.74 E-value=0.0026 Score=63.36 Aligned_cols=189 Identities=19% Similarity=0.133 Sum_probs=112.2
Q ss_pred ecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEe
Q 038230 218 NLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVD 295 (480)
Q Consensus 218 N~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISID 295 (480)
.+| .|-+.--+..++.++.++.++.+.+.|.+.|++|. |.. .+.+++.+. .+.+.. .+.. ...-
T Consensus 3 D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~----p~~----~~~~~e~~~----~l~~~~--~~~~~~~~~ 68 (259)
T cd07939 3 DTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGI----PAM----GEEEREAIR----AIVALG--LPARLIVWC 68 (259)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEec----CCC----CHHHHHHHH----HHHhcC--CCCEEEEec
Confidence 344 45554445678999999999999999999999995 321 134455443 333321 1233 3344
Q ss_pred CCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230 296 TFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD 357 (480)
Q Consensus 296 T~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~ 357 (480)
..+++-++.|++.|+++|.=..... + .++++.+++.|..+.+........+
T Consensus 69 r~~~~~v~~a~~~g~~~i~i~~~~s-~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~---------- 137 (259)
T cd07939 69 RAVKEDIEAALRCGVTAVHISIPVS-DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRAD---------- 137 (259)
T ss_pred cCCHHHHHHHHhCCcCEEEEEEecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCC----------
Confidence 4788999999999999877432211 1 2466788888887665443321110
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ec-CCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCc
Q 038230 358 DVCKQVASELYSKVRDAELSGIPAWRIII-DP-GLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADE 434 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-giGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~ 434 (480)
.+++.+.++.+.++|+. .|.+ |. |.... .+-.++++.++ ..+.| +|+- . .+
T Consensus 138 ------~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~P---~~v~~lv~~l~~~~~~~--l~~H-------~------Hn 191 (259)
T cd07939 138 ------PDFLIEFAEVAQEAGAD--RLRFADTVGILDP---FTTYELIRRLRAATDLP--LEFH-------A------HN 191 (259)
T ss_pred ------HHHHHHHHHHHHHCCCC--EEEeCCCCCCCCH---HHHHHHHHHHHHhcCCe--EEEE-------e------cC
Confidence 15677888888899986 5544 55 33333 33444555542 23344 3431 1 12
Q ss_pred ccHHHHHHHHHHHHcCCcEEEcC
Q 038230 435 RDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 435 r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
..+...|-+..|++.|++++.+-
T Consensus 192 ~~Gla~An~laAi~aG~~~vd~s 214 (259)
T cd07939 192 DLGLATANTLAAVRAGATHVSVT 214 (259)
T ss_pred CCChHHHHHHHHHHhCCCEEEEe
Confidence 22334444566788999887653
No 38
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=97.73 E-value=0.012 Score=60.98 Aligned_cols=233 Identities=15% Similarity=0.216 Sum_probs=151.8
Q ss_pred cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230 195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL 274 (480)
Q Consensus 195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl 274 (480)
.+...+|+..++.+.+..|=--.|.. -.|.++.+++++++.++|++++=+-. |+ .++.+
T Consensus 12 tr~V~VG~v~iGg~~Pi~VQSMt~t~---------T~Dv~atv~Qi~~L~~aGceiVRvav----~~------~~~a~-- 70 (360)
T PRK00366 12 TRQVKVGNVPIGGDAPIVVQSMTNTD---------TADVEATVAQIKRLARAGCEIVRVAV----PD------MEAAA-- 70 (360)
T ss_pred ceEEEEcCEeECCCCcEEEEecCCCC---------chhHHHHHHHHHHHHHcCCCEEEEcc----CC------HHHHH--
Confidence 34567788888776544443333433 36899999999999999999999965 22 23333
Q ss_pred HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCC------chHHHHHHhcCCCEEEEcCCC-CCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLD------PDMYKVVAGLKVPYVAMHMRG-DPS 346 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d------~~m~~l~~~~~~~vVlmh~~g-~p~ 346 (480)
.++.|++. .++|+.-|- |++..+.+|+++|++-|- |+.++.. .++++.|+++++|+=+=-+.| .++
T Consensus 71 --al~~I~~~---~~iPlvADIHFd~~lAl~a~~~G~~~iR-INPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~ 144 (360)
T PRK00366 71 --ALPEIKKQ---LPVPLVADIHFDYRLALAAAEAGADALR-INPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEK 144 (360)
T ss_pred --hHHHHHHc---CCCCEEEecCCCHHHHHHHHHhCCCEEE-ECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChH
Confidence 35666666 479999995 899999999999999774 6665532 358889999999998755544 343
Q ss_pred ccccccccchhh-HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccc
Q 038230 347 TMQNEENLQYDD-VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLG 424 (480)
Q Consensus 347 ~~~~~~~~~~~~-v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~ 424 (480)
...+ .|.+ ..+.+.+...+.++.+++.|+. +|++=- =+.+....++..|.+ +..+||+=+|+.
T Consensus 145 ~~~~----~yg~~t~eamveSAl~~~~~le~~~f~--~iviS~---KsS~v~~~i~ayrlla~~~dyPLHlGvT------ 209 (360)
T PRK00366 145 DLLE----KYGEPTPEALVESALRHAKILEELGFD--DIKISV---KASDVQDLIAAYRLLAKRCDYPLHLGVT------ 209 (360)
T ss_pred HHHH----HcCCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHHHhcCCCCceeccc------
Confidence 3322 2333 3455677788899999999996 888753 122334444444444 457999999974
Q ss_pred cccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230 425 EICNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM 472 (480)
Q Consensus 425 ~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai 472 (480)
+.-...+-..-+++....++..| .|=+||- | +.|.+-+-.+.+.+
T Consensus 210 ---EAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~IL~sl 259 (360)
T PRK00366 210 ---EAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEILQSL 259 (360)
T ss_pred ---CCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 22111222223444445555666 6888873 3 55555555554443
No 39
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.65 E-value=0.0042 Score=62.17 Aligned_cols=192 Identities=16% Similarity=0.086 Sum_probs=114.1
Q ss_pred ecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230 218 NLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 218 N~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT 296 (480)
..| .|-+.--+..++.++.++.++.+.+.|.+.|++|..+. ++ ++++++ +.+.+.. .+..++.=+
T Consensus 3 D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~-------~~-~~~~~~----~~l~~~~--~~~~~~~l~ 68 (268)
T cd07940 3 DTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAA-------SP-GDFEAV----KRIAREV--LNAEICGLA 68 (268)
T ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------CH-HHHHHH----HHHHHhC--CCCEEEEEc
Confidence 344 45555556678999999999999999999999995322 22 345443 4444421 245555433
Q ss_pred -CCHHHHHHHHHcC----CCEEecCCCCC---------C--C------chHHHHHHhcCCCEEEEcCCCCCCcccccccc
Q 038230 297 -FYSKVASEAVGKG----AHIVNDVSAGQ---------L--D------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENL 354 (480)
Q Consensus 297 -~~~~v~~aaL~~G----~~iINdVsg~~---------~--d------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~ 354 (480)
.+.+.++.|++.| +++|+=..+.. . + .++++.+++.|..+.+..+.+...+
T Consensus 69 r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~------- 141 (268)
T cd07940 69 RAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTD------- 141 (268)
T ss_pred cCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCC-------
Confidence 6789999999998 88777432210 0 0 2466677788877775443211111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ec-CCCCccChhHHHHHHHhcc-cCC-CcEEEeeccccccccccCCC
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DP-GLGFSKKAEHNLDILLGLA-ASH-APILIGPSRKRFLGEICNRP 430 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-giGf~k~~~~~~~~lr~l~-~~g-~Pil~G~SrKsfi~~v~g~~ 430 (480)
.+++.+.++.+.++|+. .|.+ |- |.+. +.+..++++.++ .++ .++-+|+-
T Consensus 142 ---------~~~~~~~~~~~~~~G~~--~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~~~i~l~~H------------ 195 (268)
T cd07940 142 ---------LDFLIEVVEAAIEAGAT--TINIPDTVGYLT---PEEFGELIKKLKENVPNIKVPISVH------------ 195 (268)
T ss_pred ---------HHHHHHHHHHHHHcCCC--EEEECCCCCCCC---HHHHHHHHHHHHHhCCCCceeEEEE------------
Confidence 15667888888899986 5544 54 3333 344455566552 222 11333431
Q ss_pred CcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 431 SADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 431 ~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
..+..+...+-+..|++.|++++.+-
T Consensus 196 -~Hn~~GlA~An~laAi~aG~~~iD~s 221 (268)
T cd07940 196 -CHNDLGLAVANSLAAVEAGARQVECT 221 (268)
T ss_pred -ecCCcchHHHHHHHHHHhCCCEEEEE
Confidence 11223334444566788899988664
No 40
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.64 E-value=0.0018 Score=64.71 Aligned_cols=109 Identities=15% Similarity=0.305 Sum_probs=79.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
|-+.+..++.++.+.+.|||+|.||...+-|-++.---++ -.+.+...++.+++.. .++|+-+-||..
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~--~~~p~vlm~Y~N 99 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKD--PTIPIVLMTYYN 99 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEeccc
Confidence 4588999999999999999999999977777665322222 1224566677777331 478988999875
Q ss_pred H--------HHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 300 K--------VASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 300 ~--------v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
- -++.|-++|++ +|+|+.-++ ..++.+.++++|...|.+-.
T Consensus 100 ~i~~~G~e~f~~~~~~aGvdGviipDLp~ee-~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 100 PIFQYGVERFAADAAEAGVDGLIIPDLPPEE-AEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred HHhhcCHHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHHHHcCCcEEEEeC
Confidence 4 45566667876 888887532 46789999999999997664
No 41
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=97.57 E-value=0.025 Score=63.07 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=151.0
Q ss_pred ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230 196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~ 275 (480)
+...+|+..++.+.+..|=--.|.. -.|.++.+++++++.++|++|+=|-. |+ .+|.+.+.
T Consensus 81 r~V~VG~v~iGG~~PI~VQSMt~t~---------T~D~eatv~Qi~~l~~aGceiVRvtv----~~------~~~A~al~ 141 (733)
T PLN02925 81 RTVMVGNVALGSEHPIRIQTMTTTD---------TKDVEATVDQVMRIADKGADIVRITV----QG------KKEADACF 141 (733)
T ss_pred eEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhHH
Confidence 4466788888776555443344433 37899999999999999999999965 32 46677777
Q ss_pred HHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc-CCCEEecCCCCCCC------------------------chHHHHH
Q 038230 276 PVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK-GAHIVNDVSAGQLD------------------------PDMYKVV 329 (480)
Q Consensus 276 ~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~-G~~iINdVsg~~~d------------------------~~m~~l~ 329 (480)
.+.+.|++.. .++|+.-|- |+|.++.+|++. .+--||==+-...+ ..+++.|
T Consensus 142 ~I~~~L~~~g--~~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~a 219 (733)
T PLN02925 142 EIKNTLVQKG--YNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKC 219 (733)
T ss_pred HHHHHHhhcC--CCCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777653 479999995 899999999997 22234422221111 0278889
Q ss_pred HhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc--
Q 038230 330 AGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-- 406 (480)
Q Consensus 330 ~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-- 406 (480)
+++|+++=+=-+.|. ++.. -..|.+..+.+.+...+-++.+++.|+. +|+|=- =+.+....+...|.+
T Consensus 220 k~~~~~iRIGvN~GSLs~ri----~~~yGdtp~gmVeSAle~~~i~e~~~f~--diviS~---KsSn~~~~V~AyR~La~ 290 (733)
T PLN02925 220 KKYGRAMRIGTNHGSLSDRI----MSYYGDSPRGMVESAFEFARICRKLDYH--NFVFSM---KASNPVVMVQAYRLLVA 290 (733)
T ss_pred HHCCCCEEEecCCcCchHHH----HHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCChHHHHHHHHHHHH
Confidence 999999887666553 2221 1235566667778888999999999996 888742 122333334444443
Q ss_pred ----ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCC----hHHHHHHHHHHHH
Q 038230 407 ----AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHN----IRDNLDAVKLCDS 471 (480)
Q Consensus 407 ----~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHd----V~e~~~al~~~~a 471 (480)
+...+|+.+|++-- |.. ..-+.- +++-...++..| .|-||+.- +.|.--+-++++.
T Consensus 291 ~L~~~g~~yPLhLgvTEA-------G~~-edg~IK-SAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~ 355 (733)
T PLN02925 291 EMYVLGWDYPLHLGVTEA-------GEG-EDGRMK-SAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANL 355 (733)
T ss_pred HHHhcCCCCceEEEEecC-------CCC-cCceeh-hHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHH
Confidence 23799999998632 221 112332 333344455566 78888865 4444444444443
No 42
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.55 E-value=0.0038 Score=62.89 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=89.9
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-----------
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT----------- 296 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT----------- 296 (480)
|.+++.++-++.|..+.+.|.++|++|..++.-.+..-..+++++++..+.+... +.++..=+
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~------~~~l~~~~r~~~~~~~~~~ 88 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP------NTPLQMLLRGQNLVGYRHY 88 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC------CCceehhcccccccCccCC
Confidence 4467889999999999999999999997543110011112345666544443332 22222211
Q ss_pred ---CCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230 297 ---FYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELY 368 (480)
Q Consensus 297 ---~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~ 368 (480)
...+.++.+.+.|+++|.-....+.- .+.++.+++.|..+.. +...+ +.. + .+++.
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~-----~----------~~~~~ 152 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVH-----T----------LEYYV 152 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCC-----C----------HHHHH
Confidence 25677888888999987754433211 4567888888876653 32222 111 0 15677
Q ss_pred HHHHHHHHCCCCCCCEE-Eec-CCCCccChhHHHHHHHhc
Q 038230 369 SKVRDAELSGIPAWRII-IDP-GLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~Ii-lDP-giGf~k~~~~~~~~lr~l 406 (480)
+.++++.++|.. .|. -|. |.+. +.+-.++++.+
T Consensus 153 ~~~~~~~~~Ga~--~i~l~DT~G~~~---P~~v~~lv~~l 187 (275)
T cd07937 153 KLAKELEDMGAD--SICIKDMAGLLT---PYAAYELVKAL 187 (275)
T ss_pred HHHHHHHHcCCC--EEEEcCCCCCCC---HHHHHHHHHHH
Confidence 888888999986 443 366 4433 33444555555
No 43
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=97.52 E-value=0.051 Score=55.91 Aligned_cols=232 Identities=16% Similarity=0.206 Sum_probs=148.2
Q ss_pred ccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230 196 RVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 196 r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~ 275 (480)
+...+|+..++.+.+..|=--.|.. -.|.+..+++++++.++|++++=+-. |+ .++.+
T Consensus 5 r~V~VG~v~IGG~~PI~VQSMtnt~---------T~Dv~atv~QI~~L~~aGceiVRvav----p~------~~~A~--- 62 (346)
T TIGR00612 5 RSVRVGAVPVGGDAPIVVQSMTNTD---------TIDIDSTVAQIRALEEAGCDIVRVTV----PD------RESAA--- 62 (346)
T ss_pred eEEEEcCEeECCCCcEEEEecCCCC---------chhHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHH---
Confidence 3455677777665544443333433 36899999999999999999999965 22 23333
Q ss_pred HHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCC--C---chHHHHHHhcCCCEEEEcCCC-CCCcc
Q 038230 276 PVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQL--D---PDMYKVVAGLKVPYVAMHMRG-DPSTM 348 (480)
Q Consensus 276 ~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~--d---~~m~~l~~~~~~~vVlmh~~g-~p~~~ 348 (480)
.++.|++. +++|+.-|- |++..+.+|++.|++-|- |+.++. + .++++.|+++++|+=+=-+.| .++..
T Consensus 63 -al~~I~~~---~~iPlVADIHFd~~lAl~a~~~g~dkiR-INPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 63 -AFEAIKEG---TNVPLVADIHFDYRLAALAMAKGVAKVR-INPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred -hHHHHHhC---CCCCEEEeeCCCcHHHHHHHHhccCeEE-ECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 34555655 589999996 558999999999988665 445442 1 468999999999998755544 33322
Q ss_pred ccccccchh-hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccc
Q 038230 349 QNEENLQYD-DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEI 426 (480)
Q Consensus 349 ~~~~~~~~~-~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v 426 (480)
.+ .|. ...+.+.+...+.++.+++.|+. +|++=- =+.+....++..|.+ +..+||+=+|+.
T Consensus 138 ~~----kyg~~t~eamveSAl~~v~~le~~~F~--diviS~---KsSdv~~~i~ayr~la~~~dyPLHlGVT-------- 200 (346)
T TIGR00612 138 LE----KYGDATAEAMVQSALEEAAILEKLGFR--NVVLSM---KASDVAETVAAYRLLAERSDYPLHLGVT-------- 200 (346)
T ss_pred HH----HcCCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHHHhhCCCCceeccc--------
Confidence 22 233 34556677888899999999998 888753 122334444444444 457999999974
Q ss_pred cCCCCcCcccHHHHHHHHHHHHcC-CcEEEcC---C-hHHHHHHHHHHHHH
Q 038230 427 CNRPSADERDPATIASITAGVLGG-ANIVRVH---N-IRDNLDAVKLCDSM 472 (480)
Q Consensus 427 ~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvH---d-V~e~~~al~~~~ai 472 (480)
+--...+-..-+++....++..| .|=+||- | +.|.+-+-.+.+++
T Consensus 201 -EAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~sl 250 (346)
T TIGR00612 201 -EAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSL 250 (346)
T ss_pred -cCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHc
Confidence 22112222233444455566667 7888883 3 55555554444443
No 44
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.52 E-value=0.01 Score=62.25 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=113.4
Q ss_pred EecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230 217 LNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 217 lN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID 295 (480)
+..| .|-..-.|..++.++.++.|+.+.+.|.+.|++|..+. .+.|++.+..+.+...+ ....+.-
T Consensus 5 ~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~--------~~~~~e~i~~i~~~~~~-----~~i~~~~ 71 (365)
T TIGR02660 5 NDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAM--------GEEERAVIRAIVALGLP-----ARLMAWC 71 (365)
T ss_pred EeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC--------CHHHHHHHHHHHHcCCC-----cEEEEEc
Confidence 4445 45554446678999999999999999999999995321 23556655443322111 2234455
Q ss_pred CCCHHHHHHHHHcCCCEEecCCCCCC-----------C------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhh
Q 038230 296 TFYSKVASEAVGKGAHIVNDVSAGQL-----------D------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDD 358 (480)
Q Consensus 296 T~~~~v~~aaL~~G~~iINdVsg~~~-----------d------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~ 358 (480)
..+.+-++.|++.|++.|+=...... + .++++.+++.|..+......+ +. .+
T Consensus 72 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~-~r-----~~----- 140 (365)
T TIGR02660 72 RARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDA-SR-----AD----- 140 (365)
T ss_pred CCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCC-CC-----CC-----
Confidence 57899999999999987764433210 0 146778888887766644432 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCccc
Q 038230 359 VCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERD 436 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~ 436 (480)
.+++.+.++.+.++|.. .|.+ |. .|. -++.+-.++++.+ +..++|+ |+- .- .++
T Consensus 141 -----~~~l~~~~~~~~~~Ga~--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~v~l--~~H---------~H---Nd~- 196 (365)
T TIGR02660 141 -----PDFLVELAEVAAEAGAD--RFRFADT-VGI-LDPFSTYELVRALRQAVDLPL--EMH---------AH---NDL- 196 (365)
T ss_pred -----HHHHHHHHHHHHHcCcC--EEEEccc-CCC-CCHHHHHHHHHHHHHhcCCeE--EEE---------ec---CCC-
Confidence 15677888888899986 4443 44 222 2334445566655 2334543 321 01 122
Q ss_pred HHHHHHHHHHHHcCCcEEEc
Q 038230 437 PATIASITAGVLGGANIVRV 456 (480)
Q Consensus 437 ~~t~a~~~~a~~~Ga~IlRv 456 (480)
+...|-+..|+..||+.+-+
T Consensus 197 GlA~ANalaA~~aGa~~vd~ 216 (365)
T TIGR02660 197 GMATANTLAAVRAGATHVNT 216 (365)
T ss_pred ChHHHHHHHHHHhCCCEEEE
Confidence 22333345577778777654
No 45
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.50 E-value=0.011 Score=59.27 Aligned_cols=185 Identities=17% Similarity=0.076 Sum_probs=111.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--HHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTR----PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--SKVA 302 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr----P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--~~v~ 302 (480)
..++.++.++.|+.+.+.|.|+|++|..+.. .+......++.++++.+.. ... ..+...++..+ .+.+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~---~~~~~~~~~~~~~~~~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS---KGN---TKIAVMVDYGNDDIDLL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh---ccC---CEEEEEECCCCCCHHHH
Confidence 3478899999999999999999999954332 2222333456677765433 212 24555566654 6788
Q ss_pred HHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcC--CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 303 SEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHM--RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 303 ~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
+.|.+.|+++|.=....+.- .++++.+++.|..+.+..+ -+.+ .+++.+.++++.++
T Consensus 89 ~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~------------------~~~~~~~~~~~~~~ 150 (266)
T cd07944 89 EPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYS------------------DEELLELLELVNEI 150 (266)
T ss_pred HHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCC------------------HHHHHHHHHHHHhC
Confidence 88988999987643333211 4577888888877765432 2111 15667888888889
Q ss_pred CCCCCCE-EEec-CCCCccChhHHHHHHHhcc-cCC--CcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc
Q 038230 378 GIPAWRI-IIDP-GLGFSKKAEHNLDILLGLA-ASH--APILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN 452 (480)
Q Consensus 378 Gi~~~~I-ilDP-giGf~k~~~~~~~~lr~l~-~~g--~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~ 452 (480)
|.. .| +-|. |.. ++.+-.++++.++ ..+ .|+ |+ + ..+..+...+-+..|++.|++
T Consensus 151 g~~--~i~l~DT~G~~---~P~~v~~lv~~l~~~~~~~~~i--~~-------H------~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 151 KPD--VFYIVDSFGSM---YPEDIKRIISLLRSNLDKDIKL--GF-------H------AHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred CCC--EEEEecCCCCC---CHHHHHHHHHHHHHhcCCCceE--EE-------E------eCCCccHHHHHHHHHHHcCCC
Confidence 986 44 4476 332 3344455555552 233 554 32 1 012223344445567778888
Q ss_pred EEEcC
Q 038230 453 IVRVH 457 (480)
Q Consensus 453 IlRvH 457 (480)
++.+.
T Consensus 211 ~vd~s 215 (266)
T cd07944 211 IIDAT 215 (266)
T ss_pred EEEEe
Confidence 77653
No 46
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=97.49 E-value=0.011 Score=62.44 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=115.7
Q ss_pred EEEEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 214 MGILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 214 mGIlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
+=|+..| .|-+.-.|..++.++-++.|+.+.+.|.+.|++|..+. .++|++.+..+ .+.. .+..+
T Consensus 5 v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~--------~~~~~e~i~~i----~~~~--~~~~i 70 (378)
T PRK11858 5 IEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAV--------SEDEKEAIKAI----AKLG--LNASI 70 (378)
T ss_pred eEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCc--------ChHHHHHHHHH----HhcC--CCeEE
Confidence 3466777 56666667789999999999999999999999995322 23555554333 3221 12333
Q ss_pred E-EeCCCHHHHHHHHHcCCCEEecCCCCCCC------------------chHHHHHHhcCCCEEEEcCCCCCCccccccc
Q 038230 293 S-VDTFYSKVASEAVGKGAHIVNDVSAGQLD------------------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEEN 353 (480)
Q Consensus 293 S-IDT~~~~v~~aaL~~G~~iINdVsg~~~d------------------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~ 353 (480)
. .--.+.+-++.|++.|++.|+=.-... + .+.++.+++.|..+.+....+.- .
T Consensus 71 ~~~~r~~~~di~~a~~~g~~~i~i~~~~S-d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r------~- 142 (378)
T PRK11858 71 LALNRAVKSDIDASIDCGVDAVHIFIATS-DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR------T- 142 (378)
T ss_pred EEEcccCHHHHHHHHhCCcCEEEEEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC------C-
Confidence 3 333458889999999999877443322 1 23666888888887765432211 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCC
Q 038230 354 LQYDDVCKQVASELYSKVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPS 431 (480)
Q Consensus 354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~ 431 (480)
+ .+++.+.++.+.++|.. .|. -|. .|.. ++.+-.++++.+ +..+.|+ |+- . -
T Consensus 143 ----~-----~~~l~~~~~~~~~~Ga~--~I~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~l--~~H-------~--H-- 196 (378)
T PRK11858 143 ----D-----LDFLIEFAKAAEEAGAD--RVRFCDT-VGIL-DPFTMYELVKELVEAVDIPI--EVH-------C--H-- 196 (378)
T ss_pred ----C-----HHHHHHHHHHHHhCCCC--EEEEecc-CCCC-CHHHHHHHHHHHHHhcCCeE--EEE-------e--c--
Confidence 1 16777888889999986 444 365 2322 334445566665 2335554 321 0 0
Q ss_pred cCcccHHHHHHHHHHHHcCCcEEEc
Q 038230 432 ADERDPATIASITAGVLGGANIVRV 456 (480)
Q Consensus 432 ~~~r~~~t~a~~~~a~~~Ga~IlRv 456 (480)
.++ +...|-+..|++.||+++.+
T Consensus 197 -nd~-GlA~AN~laAv~aGa~~vd~ 219 (378)
T PRK11858 197 -NDF-GMATANALAGIEAGAKQVHT 219 (378)
T ss_pred -CCc-CHHHHHHHHHHHcCCCEEEE
Confidence 122 22333345566777777655
No 47
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.47 E-value=0.0057 Score=59.14 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~ 310 (480)
++.+.+.+.++.--..||++|||-+. - .+|+.+++. +++|||+-+-+|+.+-+|+++||
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAad------------p------~LV~~~~~~---s~lPICVSaVep~~f~~aV~AGA 82 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAAD------------P------ELVKLAKSL---SNLPICVSAVEPELFVAAVKAGA 82 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecCC------------H------HHHHHHHHh---CCCCeEeecCCHHHHHHHHHhCC
Confidence 56677888888888999999999863 1 123444544 58999999999999999999999
Q ss_pred CEEecCCCC--------CC-CchHHHHHHhc
Q 038230 311 HIVNDVSAG--------QL-DPDMYKVVAGL 332 (480)
Q Consensus 311 ~iINdVsg~--------~~-d~~m~~l~~~~ 332 (480)
+||- |-.+ .+ .++++.+.++.
T Consensus 83 dliE-IGNfDsFY~qGr~f~a~eVL~Lt~~t 112 (242)
T PF04481_consen 83 DLIE-IGNFDSFYAQGRRFSAEEVLALTRET 112 (242)
T ss_pred CEEE-ecchHHHHhcCCeecHHHHHHHHHHH
Confidence 9996 3111 01 15788888875
No 48
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.40 E-value=0.012 Score=57.99 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=115.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-HH
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-SK 300 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-~~ 300 (480)
|-+.--+..++.++.++.++.+.+.|.++|++|+.+..+.. +.- +++++ +++.+.+.. .+.++...+.+ .+
T Consensus 7 DG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~-~~~~~----~i~~l~~~~--~~~~~~~l~~~~~~ 78 (265)
T cd03174 7 DGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQM-EDDWE----VLRAIRKLV--PNVKLQALVRNREK 78 (265)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccC-CCHHH----HHHHHHhcc--CCcEEEEEccCchh
Confidence 33333345579999999999999999999999985543221 110 12232 344455542 25778666666 99
Q ss_pred HHHHHHHcCCCEEecCCCCC---------------C--CchHHHHHHhcCCCEEEEcCCCC-C-CccccccccchhhHHH
Q 038230 301 VASEAVGKGAHIVNDVSAGQ---------------L--DPDMYKVVAGLKVPYVAMHMRGD-P-STMQNEENLQYDDVCK 361 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~---------------~--d~~m~~l~~~~~~~vVlmh~~g~-p-~~~~~~~~~~~~~v~~ 361 (480)
.++.+.+.|++.|.=.-... . -.+.++.++++|..+.+..+.-. | .+
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~-------------- 144 (265)
T cd03174 79 GIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTD-------------- 144 (265)
T ss_pred hHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCC--------------
Confidence 99999999988665322211 0 13467778889988776443211 1 11
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHHH
Q 038230 362 QVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPAT 439 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t 439 (480)
.+++.+.++.+.++|.. .|.+=.-.|. -++++-.++++.++ ..+.|+ |+- . .+..+..
T Consensus 145 --~~~l~~~~~~~~~~g~~--~i~l~Dt~G~-~~P~~v~~li~~l~~~~~~~~~--~~H---------~----Hn~~gla 204 (265)
T cd03174 145 --PEYVLEVAKALEEAGAD--EISLKDTVGL-ATPEEVAELVKALREALPDVPL--GLH---------T----HNTLGLA 204 (265)
T ss_pred --HHHHHHHHHHHHHcCCC--EEEechhcCC-cCHHHHHHHHHHHHHhCCCCeE--EEE---------e----CCCCChH
Confidence 15677888889999986 6776554553 33344455555552 222333 321 1 1122333
Q ss_pred HHHHHHHHHcCCcEEEcC
Q 038230 440 IASITAGVLGGANIVRVH 457 (480)
Q Consensus 440 ~a~~~~a~~~Ga~IlRvH 457 (480)
.+-+..|+..||+++.+.
T Consensus 205 ~an~laA~~aG~~~id~s 222 (265)
T cd03174 205 VANSLAALEAGADRVDGS 222 (265)
T ss_pred HHHHHHHHHcCCCEEEec
Confidence 444567788999888653
No 49
>PLN02591 tryptophan synthase
Probab=97.38 E-value=0.0017 Score=64.58 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE----------RLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~----------rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
+-+.+.-++.++.+++.|||+|.||...+-|-++.---++--. .+...++.+++. .++|+-+=||..
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~---~~~p~ilm~Y~N 88 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ---LSCPIVLFTYYN 88 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEeccc
Confidence 4578899999999999999999999977777655322222111 355566666654 478877777766
Q ss_pred HHHH--------HHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 300 KVAS--------EAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 300 ~v~~--------aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
-+.+ .|-++|++ ||+|..-++ ..++.+.++++|...|.+-.
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee-~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEE-TEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHcCCeEEEEeC
Confidence 5544 44456876 889887532 47899999999999998764
No 50
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.38 E-value=0.038 Score=55.04 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
-+.|.+++.|+...+.|+.+|==|.-- |.|.+ .... ++.++.| +..++. .++|+.-|-++++-++.+.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G-~~gl~~L----~~~~~~---~Gl~~~Tev~d~~~v~~~~e 97 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLG-LQGIRYL----HEVCQE---FGLLSVSEIMSERQLEEAYD 97 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCC-HHHHHHH----HHHHHH---cCCCEEEeeCCHHHHHHHHh
Confidence 578899999999999999999888643 33332 2222 2333332 333443 39999999999999999988
Q ss_pred cCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 308 KGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 308 ~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
.+|++- |-+++ ..-.+++.+++.|.||++-. |.-.++ +.....++++.+.|.+ +|+|
T Consensus 98 -~vdilq-Igs~~~~n~~LL~~va~tgkPVilk~--G~~~t~----------------~e~~~A~e~i~~~Gn~--~i~L 155 (250)
T PRK13397 98 -YLDVIQ-VGARNMQNFEFLKTLSHIDKPILFKR--GLMATI----------------EEYLGALSYLQDTGKS--NIIL 155 (250)
T ss_pred -cCCEEE-ECcccccCHHHHHHHHccCCeEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEEE
Confidence 588886 44433 24679999999999999832 322221 3345677778889975 7777
Q ss_pred ec-CC-CCccCh--hHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230 387 DP-GL-GFSKKA--EHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN 458 (480)
Q Consensus 387 DP-gi-Gf~k~~--~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd 458 (480)
== |+ +|.... .-++..+..++ .+++|+++|.| -+ .| .|.....+ +-.|+..||+ ++-+|.
T Consensus 156 ~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs-----~G-----~r~~v~~~-a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 156 CERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HS-----TG-----RRDLLLPA-AKIAKAVGANGIMMEVHP 222 (250)
T ss_pred EccccCCCCCccccccCHHHHHHHHHHhCCCeEECCC-CC-----Cc-----ccchHHHH-HHHHHHhCCCEEEEEecC
Confidence 66 65 343221 22333333332 47999999998 33 23 34444332 4567789999 999998
No 51
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.37 E-value=0.024 Score=56.68 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHcCCcCCCCeEEEeCCC-
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE----------LERLIPVLEAVLTMPEMEGKLVSVDTFY- 298 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE----------~~rl~~vi~~l~~~~~~~~~pISIDT~~- 298 (480)
+-+.+.-++.++.+.+.|||+|.+|...+-|-++.---++- ++.+...++.+++.. .++|+-+=||.
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~plv~m~Y~N 97 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH--PNIPIGLLTYYN 97 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEecc
Confidence 35788999999999999999999999777776553222221 135556677777531 36786677765
Q ss_pred H-------HHHHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 299 S-------KVASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 299 ~-------~v~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
| +-++++.++|++ +|.|..-.+ ..++++.++++|...|++-.
T Consensus 98 pi~~~G~e~f~~~~~~aGvdgviipDlp~ee-~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 98 LIFRKGVEEFYAKCKEVGVDGVLVADLPLEE-SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHhhhhHHHHHHHHHHcCCCEEEECCCChHH-HHHHHHHHHHCCCcEEEEEC
Confidence 3 457777888988 677775422 36789999999998886554
No 52
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=97.33 E-value=0.096 Score=57.37 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=153.0
Q ss_pred cccccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH
Q 038230 195 KRVLPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL 274 (480)
Q Consensus 195 ~r~~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl 274 (480)
.+...+|+..++.+.+..|=--.|.. -.|.++.+++++++.++|++++=+-. |+ .++.+.+
T Consensus 15 Tr~V~VG~v~iGG~~PI~VQSMt~t~---------T~D~~atv~Qi~~L~~aGceiVRvtv----p~------~~~A~al 75 (606)
T PRK00694 15 THPVRIGNLFVGSEHSIKIQSMTTTA---------TTDVDGTVRQICALQEWGCDIVRVTV----QG------LKEAQAC 75 (606)
T ss_pred ceEEEEcCEeECCCCceEEEecCCCC---------cccHHHHHHHHHHHHHcCCCEEEEcC----CC------HHHHHhH
Confidence 34467788888776655554444443 37899999999999999999999965 32 4677777
Q ss_pred HHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCCC--EEecCCCCC---------C------------C---chHHH
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGAH--IVNDVSAGQ---------L------------D---PDMYK 327 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~~--iINdVsg~~---------~------------d---~~m~~ 327 (480)
..+.+.|++.. .++|+.-|- |+|.++.+|+++ ++ -||==+-.. + . ..+++
T Consensus 76 ~~I~~~L~~~g--~~iPLVADIHF~~~~A~~a~~~-vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~ 152 (606)
T PRK00694 76 EHIKERLIQQG--ISIPLVADIHFFPQAAMHVADF-VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVE 152 (606)
T ss_pred HHHHHHHhccC--CCCCEEeecCCChHHHHHHHHh-cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 77777777653 479999996 999999999997 33 344222111 0 0 23778
Q ss_pred HHHhcCCCEEEEcCCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChh---HHHHHH
Q 038230 328 VVAGLKVPYVAMHMRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAE---HNLDIL 403 (480)
Q Consensus 328 l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~---~~~~~l 403 (480)
.|+++|+++=+=-+.|. ++..- ..|.+..+.+.+...+-++.+++.|+. +|++=- =+.+.. +.+++|
T Consensus 153 ~ake~~~~IRIGvN~GSL~~~i~----~~yG~tpegmVeSAle~~~i~e~~~f~--diviS~---KsSnv~~mi~AyrlL 223 (606)
T PRK00694 153 KCKRLGKAMRIGVNHGSLSERVM----QRYGDTIEGMVYSALEYIEVCEKLDYR--DVVFSM---KSSNPKVMVAAYRQL 223 (606)
T ss_pred HHHHCCCCEEEecCCcCchHHHH----HHhCCCHHHHHHHHHHHHHHHHHCCCC--cEEEEE---EcCCHHHHHHHHHHH
Confidence 88899999887666553 32221 235566677788888999999999996 888743 122233 334444
Q ss_pred Hh-c--ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCC----hHHHHHHHHHHHHH
Q 038230 404 LG-L--AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHN----IRDNLDAVKLCDSM 472 (480)
Q Consensus 404 r~-l--~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHd----V~e~~~al~~~~ai 472 (480)
.+ + ....||+=+|+. =.|.. ...|.--++. ...++..| .|=|||-= +.|..-|-++.+..
T Consensus 224 a~~~d~eg~~YPLHLGVT-------EAG~g-~~G~IKSavG-IG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~ 291 (606)
T PRK00694 224 AKDLDARGWLYPLHLGVT-------EAGSG-TDGIIKSAVG-IGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHT 291 (606)
T ss_pred HHHhhccCCCcCceeccc-------cCcCC-CCceeHHHHH-HHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHH
Confidence 32 1 124599999974 11322 1234433343 44455566 68888742 55555555555554
No 53
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.33 E-value=0.0035 Score=62.87 Aligned_cols=109 Identities=15% Similarity=0.266 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH----------HHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE----------RLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~----------rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
+-+.+.-++.++.+++.|||+|.||...+-|-++.-.-++--. .+...++.+++. .++|+-+=||..
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~---~~~p~vlm~Y~N 101 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE---IKAPIVIFTYYN 101 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC---CCCCEEEEeccc
Confidence 4578889999999999999999999977777665322222222 456667777754 478877777774
Q ss_pred HH--------HHHHHHcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230 300 KV--------ASEAVGKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 300 ~v--------~~aaL~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~ 342 (480)
-+ ++.|.++|++ +|-|..-++ ..++.+.++++|...|.+-..
T Consensus 102 ~i~~~G~e~F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 102 PVLHYGINKFIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHhCHHHHHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcCCCEEEEECC
Confidence 43 5556667888 677776432 478999999999999987753
No 54
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.31 E-value=0.036 Score=55.57 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~ 308 (480)
-+.+.+++.|+++.+.|+.+.--+..- |+|.+-.-..++.++.+. ...+. .++++.-+-++++.++.+.+.
T Consensus 36 e~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~----~~~~~---~Gl~~~t~~~d~~~~~~l~~~ 108 (260)
T TIGR01361 36 ESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLR----RAADE---HGLPVVTEVMDPRDVEIVAEY 108 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHH----HHHHH---hCCCEEEeeCChhhHHHHHhh
Confidence 578899999999999999865544332 333221111245555443 33333 399999999999999999988
Q ss_pred CCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-
Q 038230 309 GAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII- 386 (480)
Q Consensus 309 G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil- 386 (480)
++++- |.+.+ ....+++.+++.|.||++-. |+-.++ +.....++.+.+.|.+ +|+|
T Consensus 109 -~d~lk-I~s~~~~n~~LL~~~a~~gkPVilk~--G~~~t~----------------~e~~~Ave~i~~~Gn~--~i~l~ 166 (260)
T TIGR01361 109 -ADILQ-IGARNMQNFELLKEVGKQGKPVLLKR--GMGNTI----------------EEWLYAAEYILSSGNG--NVILC 166 (260)
T ss_pred -CCEEE-ECcccccCHHHHHHHhcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--cEEEE
Confidence 88776 54433 34679999999999999843 222121 3344667778888975 6766
Q ss_pred ecCC-CC-cc-ChhHHHHHHHhcc-cCCCcEEE--eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230 387 DPGL-GF-SK-KAEHNLDILLGLA-ASHAPILI--GPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN 458 (480)
Q Consensus 387 DPgi-Gf-~k-~~~~~~~~lr~l~-~~g~Pil~--G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd 458 (480)
.=|+ .| +. ...-|+..|..++ .+++|+.+ ++| .| .|.....+ +..|+..||+ ++-+|-
T Consensus 167 ~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs--------~G-----~r~~~~~~-~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 167 ERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHA--------AG-----RRDLVIPL-AKAAIAAGADGLMIEVHP 232 (260)
T ss_pred ECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCC--------CC-----ccchHHHH-HHHHHHcCCCEEEEEeCC
Confidence 5566 55 32 2244566666653 46899876 443 12 24443333 4458889999 999997
No 55
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.17 E-value=0.045 Score=57.41 Aligned_cols=194 Identities=22% Similarity=0.250 Sum_probs=114.0
Q ss_pred EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
|+..| .|-..-.|..++.++.++.|+.+.+.|.+.|++|. | ...++|++.+..+.+.-. .....+.
T Consensus 3 i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~----p----~~~~~~~e~i~~i~~~~~-----~~~v~~~ 69 (363)
T TIGR02090 3 IFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGF----P----IASEGEFEAIKKISQEGL-----NAEICSL 69 (363)
T ss_pred EEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----C----CCChHHHHHHHHHHhcCC-----CcEEEEE
Confidence 34445 45554456678999999999999999999999995 2 223467776654443211 1223344
Q ss_pred eCCCHHHHHHHHHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230 295 DTFYSKVASEAVGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD 357 (480)
Q Consensus 295 DT~~~~v~~aaL~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~ 357 (480)
=..+++-++.|++.|++.|.=.-+.. .. .+.++.+++.|..+.+....... .+
T Consensus 70 ~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r------~~---- 139 (363)
T TIGR02090 70 ARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATR------TD---- 139 (363)
T ss_pred cccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCC------CC----
Confidence 45689999999999998776422210 01 24667788888877765443211 11
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcc
Q 038230 358 DVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADER 435 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r 435 (480)
.+++.+.++.+.+.|.. .|.+ |. .|. -++.+-.++++.++ ..+.| +|+ +. - .++
T Consensus 140 ------~~~l~~~~~~~~~~g~~--~i~l~DT-~G~-~~P~~v~~li~~l~~~~~~~--l~~-------H~--H---nd~ 195 (363)
T TIGR02090 140 ------IDFLIKVFKRAEEAGAD--RINIADT-VGV-LTPQKMEELIKKLKENVKLP--ISV-------HC--H---NDF 195 (363)
T ss_pred ------HHHHHHHHHHHHhCCCC--EEEEeCC-CCc-cCHHHHHHHHHHHhcccCce--EEE-------Ee--c---CCC
Confidence 15677888888899986 5544 54 232 22344556666652 23333 332 10 0 122
Q ss_pred cHHHHHHHHHHHHcCCcEEEcC
Q 038230 436 DPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 436 ~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+...|-+..|+..||+++.+.
T Consensus 196 -GlA~AN~laA~~aGa~~vd~s 216 (363)
T TIGR02090 196 -GLATANSIAGVKAGAEQVHVT 216 (363)
T ss_pred -ChHHHHHHHHHHCCCCEEEEE
Confidence 223333455667787776553
No 56
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.14 E-value=0.098 Score=53.18 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=117.9
Q ss_pred EEecC-CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230 216 ILNLT-PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVS 293 (480)
Q Consensus 216 IlN~t-pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS 293 (480)
|+..| .|-+-.-+.+++.++-++.|+.+.+.|.+.|++|- ...|..- ..+ ++++ +++.|.+. .+..++
T Consensus 7 I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgs-f~~p~~~p~~~--d~~e----~~~~l~~~---~~~~~~ 76 (287)
T PRK05692 7 IVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVAS-FVSPKWVPQMA--DAAE----VMAGIQRR---PGVTYA 76 (287)
T ss_pred EEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCC-CcCcccccccc--cHHH----HHHhhhcc---CCCeEE
Confidence 56667 57776667889999999999999999999999992 1123211 111 1222 23333332 133333
Q ss_pred EeCCCHHHHHHHHHcCCCEEecCCCCCC-----------------CchHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230 294 VDTFYSKVASEAVGKGAHIVNDVSAGQL-----------------DPDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL 354 (480)
Q Consensus 294 IDT~~~~v~~aaL~~G~~iINdVsg~~~-----------------d~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~ 354 (480)
.=..+.+-++.|++.|++.|+-...... -.++++.++++|..+. ++..-|.|..- +.+
T Consensus 77 ~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~--~~~- 153 (287)
T PRK05692 77 ALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG--EVP- 153 (287)
T ss_pred EEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC--CCC-
Confidence 3246899999999999997775533210 1247788888998765 33333333211 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cC-CCcEEEeeccccccccccCCCC
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-AS-HAPILIGPSRKRFLGEICNRPS 431 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~-g~Pil~G~SrKsfi~~v~g~~~ 431 (480)
.+++.+.++.+.++|+. .|.| |. .|.. ++.+-.++++.++ .. +.|+-+ |.
T Consensus 154 ---------~~~~~~~~~~~~~~G~d--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~i~~-H~------------- 206 (287)
T PRK05692 154 ---------PEAVADVAERLFALGCY--EISLGDT-IGVG-TPGQVRAVLEAVLAEFPAERLAG-HF------------- 206 (287)
T ss_pred ---------HHHHHHHHHHHHHcCCc--EEEeccc-cCcc-CHHHHHHHHHHHHHhCCCCeEEE-Ee-------------
Confidence 16778888999999986 5544 54 3333 3455566777762 22 355422 11
Q ss_pred cCcccHHHHHHHHHHHHcCCcEE
Q 038230 432 ADERDPATIASITAGVLGGANIV 454 (480)
Q Consensus 432 ~~~r~~~t~a~~~~a~~~Ga~Il 454 (480)
.+..+...+-+..|++.|++++
T Consensus 207 -Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 207 -HDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred -cCCCCcHHHHHHHHHHhCCCEE
Confidence 1122333444556778888888
No 57
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.13 E-value=0.17 Score=52.85 Aligned_cols=187 Identities=22% Similarity=0.326 Sum_probs=124.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTR--PMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV 306 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL 306 (480)
.-+.+.+++.|+.+.+.|+.++.-|..-.| |.+ .... ++.++.+ +.+++. .++++.-+-++++-++.+.
T Consensus 111 IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g-~~gl~~L----~~~~~e---~Gl~~~tev~d~~~v~~~~ 182 (352)
T PRK13396 111 VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG-ESALELL----AAAREA---TGLGIITEVMDAADLEKIA 182 (352)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch-HHHHHHH----HHHHHH---cCCcEEEeeCCHHHHHHHH
Confidence 368899999999999999999997764433 322 2222 4445544 344444 4999999999999999999
Q ss_pred HcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230 307 GKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385 (480)
Q Consensus 307 ~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii 385 (480)
++ +|++- |.+.+ ..-.+++.+++.+.||++-. |.-.|+ +.+...++.+.+.|.+ +|+
T Consensus 183 ~~-~d~lq-Iga~~~~n~~LL~~va~t~kPVllk~--G~~~t~----------------ee~~~A~e~i~~~Gn~--~vi 240 (352)
T PRK13396 183 EV-ADVIQ-VGARNMQNFSLLKKVGAQDKPVLLKR--GMAATI----------------DEWLMAAEYILAAGNP--NVI 240 (352)
T ss_pred hh-CCeEE-ECcccccCHHHHHHHHccCCeEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEE
Confidence 98 78876 44433 23578999999999999833 333222 3345667777788875 454
Q ss_pred -EecCC-CCcc---ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcC
Q 038230 386 -IDPGL-GFSK---KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVH 457 (480)
Q Consensus 386 -lDPgi-Gf~k---~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvH 457 (480)
..=|+ .|.. ...-++..+..++ .+++|+++=.| +.+|. |+. +..++-.|+..||+ ++-+|
T Consensus 241 L~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps------H~~G~-----sd~-~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 241 LCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS------HGTGK-----SEY-VPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred EEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc------ccCCc-----HHH-HHHHHHHHHhhCCCeEEEEec
Confidence 45576 3421 1233455555443 46899998766 23343 222 22456678889999 99999
Q ss_pred C
Q 038230 458 N 458 (480)
Q Consensus 458 d 458 (480)
.
T Consensus 309 ~ 309 (352)
T PRK13396 309 P 309 (352)
T ss_pred C
Confidence 8
No 58
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.09 E-value=0.039 Score=59.45 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=121.3
Q ss_pred EEecC-CCCCCC-CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 216 ILNLT-PDSFSD-GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 216 IlN~t-pDSFsd-gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
|...| .|-+-. ++..++.++-++.|..+.+.|.+.|++++..|.+-+ -.++ +++|+++..+-+.+. +.++
T Consensus 6 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~~~~~------~~~l 78 (448)
T PRK12331 6 ITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIRKAVK------KTKL 78 (448)
T ss_pred EEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHHHhCC------CCEE
Confidence 45555 454433 455688999999999999999999999987777632 1233 346777654443322 4455
Q ss_pred E----------EeC----CCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccc
Q 038230 293 S----------VDT----FYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEEN 353 (480)
Q Consensus 293 S----------IDT----~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~ 353 (480)
+ .-. -..+-+++|+++|+++|.=..+.+.- .++++.+++.|..+. ++.+.+ |.. +
T Consensus 79 ~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~-p~~-----~ 152 (448)
T PRK12331 79 QMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS-PVH-----T 152 (448)
T ss_pred EEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC-CCC-----C
Confidence 4 111 23456688999999988766554421 457888889997643 344433 421 1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCC
Q 038230 354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPS 431 (480)
Q Consensus 354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~ 431 (480)
.+++.+.++.+.++|+. .|.| |. .|..+ +.+..++++.++ ..+.|+=+ |.
T Consensus 153 ----------~~~~~~~a~~l~~~Gad--~I~i~Dt-~G~l~-P~~v~~lv~alk~~~~~pi~~-H~------------- 204 (448)
T PRK12331 153 ----------IDYFVKLAKEMQEMGAD--SICIKDM-AGILT-PYVAYELVKRIKEAVTVPLEV-HT------------- 204 (448)
T ss_pred ----------HHHHHHHHHHHHHcCCC--EEEEcCC-CCCCC-HHHHHHHHHHHHHhcCCeEEE-Ee-------------
Confidence 15667888888999986 4544 55 33322 344456677663 35666533 11
Q ss_pred cCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 432 ADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 432 ~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
.+-.+...|-+..|++.||+++.+-
T Consensus 205 -Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 205 -HATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred -cCCCCcHHHHHHHHHHcCCCEEEee
Confidence 1111223344456778888887664
No 59
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.09 E-value=0.052 Score=54.75 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=111.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~ 300 (480)
|-+---|.+++.|+-++.++.+.+.|.+.|++|-- ..|.. .....++|. ++.+... .+..++.=..+.+
T Consensus 8 DG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~-~~~~~~p~~~d~~~~------~~~l~~~---~~~~~~~~~~~~~ 77 (274)
T cd07938 8 DGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSF-VSPKWVPQMADAEEV------LAGLPRR---PGVRYSALVPNLR 77 (274)
T ss_pred CCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCC-CCcccccccCCHHHH------HhhcccC---CCCEEEEECCCHH
Confidence 33444466789999999999999999999999932 12221 112222332 2222222 1343333357889
Q ss_pred HHHHHHHcCCCEEecCCCCCC---------C--------chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHH
Q 038230 301 VASEAVGKGAHIVNDVSAGQL---------D--------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCK 361 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~~---------d--------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ 361 (480)
-++.|++.|++.|+=...... . .+.++.+++.|..+. ++..-|-|..- +.+
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~--~~~-------- 147 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEG--EVP-------- 147 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCC--CCC--------
Confidence 999999999887664432220 0 235778888887765 33333333210 000
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHH
Q 038230 362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPA 438 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~ 438 (480)
.+++.+.++.+.+.|.. .|.+ |. .|.. ++.+-.++++.++ .++.|+-+ | . .+..+.
T Consensus 148 --~~~~~~~~~~~~~~Ga~--~i~l~DT-~G~~-~P~~v~~lv~~l~~~~~~~~i~~-H--------~------Hnd~Gl 206 (274)
T cd07938 148 --PERVAEVAERLLDLGCD--EISLGDT-IGVA-TPAQVRRLLEAVLERFPDEKLAL-H--------F------HDTRGQ 206 (274)
T ss_pred --HHHHHHHHHHHHHcCCC--EEEECCC-CCcc-CHHHHHHHHHHHHHHCCCCeEEE-E--------E------CCCCCh
Confidence 25677888888889986 5544 54 3332 2344455666652 23455432 1 1 122233
Q ss_pred HHHHHHHHHHcCCcEEEc
Q 038230 439 TIASITAGVLGGANIVRV 456 (480)
Q Consensus 439 t~a~~~~a~~~Ga~IlRv 456 (480)
..+-+..|++.||+++.+
T Consensus 207 A~AN~laA~~aGa~~id~ 224 (274)
T cd07938 207 ALANILAALEAGVRRFDS 224 (274)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 444456788899988874
No 60
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.07 E-value=0.018 Score=57.75 Aligned_cols=172 Identities=14% Similarity=0.322 Sum_probs=105.7
Q ss_pred CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----------HHHHHHHHH
Q 038230 209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----------ELERLIPVL 278 (480)
Q Consensus 209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----------E~~rl~~vi 278 (480)
.++.+|+-+-.- |-+.+.-++.++.+.++|||+|.||...+.|-++.---++ .++.+...+
T Consensus 8 ~~~~li~yitaG---------~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~ 78 (259)
T PF00290_consen 8 GRKALIPYITAG---------YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELV 78 (259)
T ss_dssp TBTEEEEEEETT---------SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CCCeEEEEEeCC---------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 456666644443 4588999999999999999999999988888765322222 234456677
Q ss_pred HHHH-cCCcCCCCeEEEeCCCHHHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCc
Q 038230 279 EAVL-TMPEMEGKLVSVDTFYSKVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPST 347 (480)
Q Consensus 279 ~~l~-~~~~~~~~pISIDT~~~~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~ 347 (480)
+.++ +. .++|+-+=||..-+...++ ++|++ ||.|..-++ ..++.+.++++|..+|.+-.. .|
T Consensus 79 ~~ir~~~---~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee-~~~~~~~~~~~gl~~I~lv~p---~t 151 (259)
T PF00290_consen 79 KEIRKKE---PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE-SEELREAAKKHGLDLIPLVAP---TT 151 (259)
T ss_dssp HHHHHHC---TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG-HHHHHHHHHHTT-EEEEEEET---TS
T ss_pred HHHhccC---CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHH-HHHHHHHHHHcCCeEEEEECC---CC
Confidence 7888 44 5899999999776655544 45766 888887543 478899999999999977643 22
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-c--cC-hhHHHHHHHhc-ccCCCcEEEee
Q 038230 348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-S--KK-AEHNLDILLGL-AASHAPILIGP 417 (480)
Q Consensus 348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~--k~-~~~~~~~lr~l-~~~g~Pil~G~ 417 (480)
.++ .+++..+ ...|+ |++=.-.|. | .. ..+-.+.++++ +..+.|+++|.
T Consensus 152 ~~~---------------Ri~~i~~--~a~gF----iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGF 205 (259)
T PF00290_consen 152 PEE---------------RIKKIAK--QASGF----IYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGF 205 (259)
T ss_dssp -HH---------------HHHHHHH--H-SSE----EEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEES
T ss_pred CHH---------------HHHHHHH--hCCcE----EEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEec
Confidence 211 1112112 23566 776544442 2 11 22233445555 24699999986
No 61
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.03 E-value=0.044 Score=54.88 Aligned_cols=109 Identities=15% Similarity=0.317 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHH----H------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEK----E------LERLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~e----E------~~rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
+-+++..++.++.++++|||+|.+|...+-|-++.-.-+. . .+.....++.+++.. .++|+.+=||.-
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~--~~~Pivlm~Y~N 104 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG--VKVPIVLMTYYN 104 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCEEEEEecc
Confidence 3578999999999999999999999977777655322211 1 234556777777542 589999999887
Q ss_pred HHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 300 KVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 300 ~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
-+...++ ++|++ +|-|+--+. .+++.+.+++||...|.+..
T Consensus 105 pi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 105 PIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeC
Confidence 7655544 45877 888887543 46799999999999997765
No 62
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.01 E-value=0.042 Score=59.50 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=120.9
Q ss_pred EEecC-CCCCCC-CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230 216 ILNLT-PDSFSD-GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS 293 (480)
Q Consensus 216 IlN~t-pDSFsd-gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS 293 (480)
|...| .|-+-. ++..++.++-+..|..+.+.|.+.|++|+.+|.+-+.....++.|+++..+-+.+. +.++.
T Consensus 5 I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~------~~~l~ 78 (467)
T PRK14041 5 FVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK------NTKIQ 78 (467)
T ss_pred EEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC------CCEEE
Confidence 44455 444432 34568899999999999999999999998777653222222456887655443322 34443
Q ss_pred E--eC-------CCHHH-----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230 294 V--DT-------FYSKV-----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL 354 (480)
Q Consensus 294 I--DT-------~~~~v-----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~ 354 (480)
. =. .+|+- ++.|++.|+++|.=..+.+.- ....+.+++.|..+. ++++.+ |..
T Consensus 79 ~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~-p~~------- 150 (467)
T PRK14041 79 MLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVS-PVH------- 150 (467)
T ss_pred EEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccC-CCC-------
Confidence 2 11 13333 788888999988866554421 346778888887554 333333 421
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCc
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSA 432 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~ 432 (480)
+ .+++.+.++.+.++|.. .|.| |. .|.. ++.+-.++++.++ ..++|+=+ |+
T Consensus 151 ---t-----~e~~~~~a~~l~~~Gad--~I~i~Dt-~G~l-~P~~v~~Lv~~lk~~~~vpI~~-H~-------------- 203 (467)
T PRK14041 151 ---T-----LEYYLEFARELVDMGVD--SICIKDM-AGLL-TPKRAYELVKALKKKFGVPVEV-HS-------------- 203 (467)
T ss_pred ---C-----HHHHHHHHHHHHHcCCC--EEEECCc-cCCc-CHHHHHHHHHHHHHhcCCceEE-Ee--------------
Confidence 0 25677888888999986 5544 65 3332 2344566777663 34566532 11
Q ss_pred CcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 433 DERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 433 ~~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
.+-.+...|-+..|++.||+++.+-=
T Consensus 204 Hnt~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 204 HCTTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred cCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 11223334445567888998887643
No 63
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=97.00 E-value=0.19 Score=51.59 Aligned_cols=209 Identities=19% Similarity=0.143 Sum_probs=139.8
Q ss_pred ccccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC------CC-----CCCC----C
Q 038230 198 LPIGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA------QS-----TRPM----A 262 (480)
Q Consensus 198 ~~~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~------eS-----trP~----a 262 (480)
+.++++.++...+|.|...+-+.- ..+.|-|.+....-.++|||+|=+=. .| +.+. .
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NH--------nG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~ 73 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANH--------NGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLW 73 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccc--------cCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCcccccccc
Confidence 568889998889999999776654 35678888888888889999998753 01 1111 1
Q ss_pred CCCCHHH-------HHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCC
Q 038230 263 TKISAEK-------ELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVP 335 (480)
Q Consensus 263 ~~v~~~e-------E~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~ 335 (480)
..+|.=| -+++-.++.+..++. ++.+..--|+...+....+.+++..-=-|++--+..+++.+++.+-|
T Consensus 74 ~~~slyel~e~~~~p~e~~~~Lke~a~~~----Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kP 149 (347)
T COG2089 74 DKVSLYELYEEAETPLEWHAQLKEYARKR----GIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKP 149 (347)
T ss_pred ccccHHHHHHHhcCCHHHHHHHHHHHHHc----CeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCC
Confidence 1222211 123444445555554 88888888899999888888999888667665568899999999999
Q ss_pred EEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec-CCCCc-cChhHHHHHHHhc-ccCCCc
Q 038230 336 YVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP-GLGFS-KKAEHNLDILLGL-AASHAP 412 (480)
Q Consensus 336 vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP-giGf~-k~~~~~~~~lr~l-~~~g~P 412 (480)
+|+.. |+.. .++.++.++.++++|.+ +|+|== --.+. ...+-|+..+..+ ..++++
T Consensus 150 iIlST--Gma~-----------------~~ei~~av~~~r~~g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~ 208 (347)
T COG2089 150 IILST--GMAT-----------------IEEIEEAVAILRENGNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAI 208 (347)
T ss_pred EEEEc--cccc-----------------HHHHHHHHHHHHhcCCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCc
Confidence 99844 2220 24567889999999997 555533 33453 3346688888887 345544
Q ss_pred EEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 413 ILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 413 il~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+|+| |...+++ +...|+..||.++-=|
T Consensus 209 --vGlS---------------DHT~g~~-a~l~AvALGA~viEKH 235 (347)
T COG2089 209 --VGLS---------------DHTLGIL-APLAAVALGASVIEKH 235 (347)
T ss_pred --cccc---------------cCccchh-HHHHHHHhcccceeee
Confidence 4766 1222333 3567888888887666
No 64
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.98 E-value=0.12 Score=51.20 Aligned_cols=108 Identities=14% Similarity=0.056 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHcCCcCCCCeEEEe------CCC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI-----PVLEAVLTMPEMEGKLVSVD------TFY 298 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~-----~vi~~l~~~~~~~~~pISID------T~~ 298 (480)
|.+.++-++.++.+.+. ||+|.+|...+.|-++.-.-++-..|.. .+++.+++. +++|+-+= .++
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~---~~~Pl~lM~y~n~~~~~ 89 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD---VSVPIILMTYLEDYVDS 89 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc---CCCCEEEEEecchhhhC
Confidence 45788888888888776 9999999977777555433344455554 678888865 47786431 446
Q ss_pred HHH-HHHHHHcCCCEEecC--CCC--CCCchHHHHHHhcCCCEEEEcC
Q 038230 299 SKV-ASEAVGKGAHIVNDV--SAG--QLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 299 ~~v-~~aaL~~G~~iINdV--sg~--~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
++. ++++.++|++.+-=. -.+ ....++++.++++|...++.-+
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEEC
Confidence 665 777888899865422 111 1125789999999998887654
No 65
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.93 E-value=0.25 Score=49.68 Aligned_cols=185 Identities=20% Similarity=0.280 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~ 308 (480)
-+.+.+++.|+++.+.|+.++=.|.+-.| |.+-.-..++.++.+. .+.+. .++|+.-+-+++..++.+.+.
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~----~~~~~---~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILK----EVGDK---YNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHH----HHHHH---cCCCEEEeeCChhhHHHHHHh
Confidence 47899999999999999999999976433 2111111234444433 23333 399999999999999999988
Q ss_pred CCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-
Q 038230 309 GAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII- 386 (480)
Q Consensus 309 G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil- 386 (480)
++++- |.+.+- ...++..+++.+.||++-. |+-.++ +.+...++.+...|-+ +++|
T Consensus 111 -vd~~k-Iga~~~~n~~LL~~~a~~gkPV~lk~--G~~~s~----------------~e~~~A~e~i~~~Gn~--~i~L~ 168 (266)
T PRK13398 111 -ADMLQ-IGSRNMQNFELLKEVGKTKKPILLKR--GMSATL----------------EEWLYAAEYIMSEGNE--NVVLC 168 (266)
T ss_pred -CCEEE-ECcccccCHHHHHHHhcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHhcCCC--eEEEE
Confidence 78775 555442 3568999999999999843 222121 2233456677788885 5444
Q ss_pred ecCC-CCccC--hhHHHHHHHhcc-cCCCcEEE--eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230 387 DPGL-GFSKK--AEHNLDILLGLA-ASHAPILI--GPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN 458 (480)
Q Consensus 387 DPgi-Gf~k~--~~~~~~~lr~l~-~~g~Pil~--G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd 458 (480)
.=|. .|... ..-|+..+..++ .+++|+.+ .+| .| .|.... ..+..|+..||+ ++-+|-
T Consensus 169 ~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs--------~G-----~~~~v~-~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 169 ERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHA--------TG-----RRELVI-PMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCc--------cc-----chhhHH-HHHHHHHHcCCCEEEEeccC
Confidence 4444 23221 123455555553 46899776 333 12 233322 335667789999 999996
No 66
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.87 E-value=0.074 Score=59.32 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=119.3
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----------EeCC
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----------VDTF 297 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----------IDT~ 297 (480)
+..++.++.+..|..+.+.|.+.|+++|.+|.+..-+...+++|+|+..+.+.+. +.++. -..|
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~------~~~lqml~Rg~n~vg~~~y 94 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMP------NTPQQMLLRGQNLLGYRHY 94 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCC------CCeEEEEecCcceeccccC
Confidence 4457889999999999999999999998888875444445678999866554432 34542 2222
Q ss_pred CHHH----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230 298 YSKV----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASELY 368 (480)
Q Consensus 298 ~~~v----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~ 368 (480)
--++ ++.|.+.|+++|.=..+.+.- ...++.++++|..+ .++.+. .|.. + .+++.
T Consensus 95 pddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~-~p~~----------~-----~~~~~ 158 (593)
T PRK14040 95 ADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT-SPVH----------T-----LQTWV 158 (593)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee-CCcc----------C-----HHHHH
Confidence 2233 778888899988755544422 35678888888753 233332 2311 1 26777
Q ss_pred HHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230 369 SKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a 446 (480)
+.++.+.++|.. .|.| |. .|.. ++.+-.++++.++ ..+.|+=+ |+ .+..+...+-+..|
T Consensus 159 ~~a~~l~~~Gad--~i~i~Dt-~G~l-~P~~~~~lv~~lk~~~~~pi~~-H~--------------Hnt~GlA~An~laA 219 (593)
T PRK14040 159 DLAKQLEDMGVD--SLCIKDM-AGLL-KPYAAYELVSRIKKRVDVPLHL-HC--------------HATTGLSTATLLKA 219 (593)
T ss_pred HHHHHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHHhcCCeEEE-EE--------------CCCCchHHHHHHHH
Confidence 888888999986 5544 65 2322 2344566777763 34666532 11 12223344445668
Q ss_pred HHcCCcEEEcCC
Q 038230 447 VLGGANIVRVHN 458 (480)
Q Consensus 447 ~~~Ga~IlRvHd 458 (480)
++.||+++.+.=
T Consensus 220 ieAGa~~vD~ai 231 (593)
T PRK14040 220 IEAGIDGVDTAI 231 (593)
T ss_pred HHcCCCEEEecc
Confidence 889999887653
No 67
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.86 E-value=0.057 Score=60.22 Aligned_cols=201 Identities=15% Similarity=0.092 Sum_probs=119.2
Q ss_pred EEecC-CCCC-CCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230 216 ILNLT-PDSF-SDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS 293 (480)
Q Consensus 216 IlN~t-pDSF-sdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS 293 (480)
|...| .|-+ |-+...++.++-+..|..+.+.|.+.|++|+.+|.+-+-.--.++.|+|+..+-+.+. +.++.
T Consensus 6 i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~------~~~l~ 79 (592)
T PRK09282 6 ITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP------NTPLQ 79 (592)
T ss_pred EEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC------CCEEE
Confidence 44455 4433 2234457889999999999999999999998777653222223477888755443332 34444
Q ss_pred EeCC--------------CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCcccccccc
Q 038230 294 VDTF--------------YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENL 354 (480)
Q Consensus 294 IDT~--------------~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~ 354 (480)
.=.+ ..+-++.|.++|+++|.=..+.+.- ....+.+++.|..+. ++.+. .|..
T Consensus 80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~------- 151 (592)
T PRK09282 80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT-SPVH------- 151 (592)
T ss_pred EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc-CCCC-------
Confidence 3211 2344788899999998866555422 345677788886554 33333 2421
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCc
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSA 432 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~ 432 (480)
+ .+++.+.++.+.++|.. .|.| |. .|.. ++.+..++++.++ ..+.|+=+ |+
T Consensus 152 ---t-----~~~~~~~a~~l~~~Gad--~I~i~Dt-~G~~-~P~~~~~lv~~lk~~~~~pi~~-H~-------------- 204 (592)
T PRK09282 152 ---T-----IEKYVELAKELEEMGCD--SICIKDM-AGLL-TPYAAYELVKALKEEVDLPVQL-HS-------------- 204 (592)
T ss_pred ---C-----HHHHHHHHHHHHHcCCC--EEEECCc-CCCc-CHHHHHHHHHHHHHhCCCeEEE-EE--------------
Confidence 1 25667888888899986 4544 55 2222 2344456666663 34555422 11
Q ss_pred CcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 433 DERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 433 ~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
.+..+...+-+..|++.||+++.+.
T Consensus 205 Hnt~Gla~An~laAv~aGad~vD~a 229 (592)
T PRK09282 205 HCTSGLAPMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred cCCCCcHHHHHHHHHHhCCCEEEee
Confidence 1122334444556778888877654
No 68
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.83 E-value=0.83 Score=48.00 Aligned_cols=186 Identities=18% Similarity=0.260 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCC-CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPM-ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~-a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
-+.+..++.|+.+.+.|+.++=-|.-- |.|. ...++. +.++.+ +...+. .++++.-+-++++-++.+.+
T Consensus 129 E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~-e~l~~L----~~~~~~---~Gl~~~t~v~d~~~~~~l~~ 200 (360)
T PRK12595 129 ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGV-EGLKIL----KQVADE---YGLAVISEIVNPADVEVALD 200 (360)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCH-HHHHHH----HHHHHH---cCCCEEEeeCCHHHHHHHHH
Confidence 468899999999999999999877543 3342 233442 444433 233333 39999999999999999999
Q ss_pred cCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 308 KGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 308 ~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
. ++++- |.+++ ..-.++..+++.|.||++-. |.-.++ +.....++.+.+.|.+ +|+|
T Consensus 201 ~-vd~lk-I~s~~~~n~~LL~~~a~~gkPVilk~--G~~~t~----------------~e~~~Ave~i~~~Gn~--~i~L 258 (360)
T PRK12595 201 Y-VDVIQ-IGARNMQNFELLKAAGRVNKPVLLKR--GLSATI----------------EEFIYAAEYIMSQGNG--QIIL 258 (360)
T ss_pred h-CCeEE-ECcccccCHHHHHHHHccCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHCCCC--CEEE
Confidence 9 88876 44433 23679999999999999843 322221 3345667777888975 6777
Q ss_pred ec-CCCC-ccC--hhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230 387 DP-GLGF-SKK--AEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN 458 (480)
Q Consensus 387 DP-giGf-~k~--~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd 458 (480)
== |+-+ ... ..-|+..|..++ .+++|+.++.|. -+| +|... ..++-.|+..||+ ++-+|-
T Consensus 259 ~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~H------s~G-----~r~~~-~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 259 CERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTH------STG-----RRDLL-LPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred ECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCC------CCc-----chhhH-HHHHHHHHHcCCCeEEEEecC
Confidence 54 6543 211 122455565553 479998774331 122 23332 2234556788995 999996
No 69
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.79 E-value=0.076 Score=51.80 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=110.1
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
+..++.++.++.++.+.+.|.++|++|..+. .+++++.+..+.+.+.+. ...++-....+.++.+++
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~--------~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~ 74 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVGFPFA--------SEDDFEQVRRLREALPNA-----RLQALCRANEEDIERAVE 74 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEEHCTS--------SHHHHHHHHHHHHHHHSS-----EEEEEEESCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEccccc--------CHHHHHHhhhhhhhhccc-----ccceeeeehHHHHHHHHH
Confidence 3457899999999999999999999993221 247788887777777652 334555678888888777
Q ss_pred ----cCCCEEecCCCCCC-----------------CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHH
Q 038230 308 ----KGAHIVNDVSAGQL-----------------DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE 366 (480)
Q Consensus 308 ----~G~~iINdVsg~~~-----------------d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~ 366 (480)
.|++.|.-....+. -.++++.+++.|..+.+..+....-+ .++
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~----------------~~~ 138 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTD----------------PEE 138 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS----------------HHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc----------------HHH
Confidence 79887764443321 03567888889988876554321111 145
Q ss_pred HHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHHHHHHH
Q 038230 367 LYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPATIASI 443 (480)
Q Consensus 367 l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~ 443 (480)
+.+.++++.++|++ .|.| |- .|.. ++.+-.++++.++ .++.|+ |+- . .+..+...|-+
T Consensus 139 ~~~~~~~~~~~g~~--~i~l~Dt-~G~~-~P~~v~~lv~~~~~~~~~~~l--~~H-------~------Hnd~Gla~An~ 199 (237)
T PF00682_consen 139 LLELAEALAEAGAD--IIYLADT-VGIM-TPEDVAELVRALREALPDIPL--GFH-------A------HNDLGLAVANA 199 (237)
T ss_dssp HHHHHHHHHHHT-S--EEEEEET-TS-S--HHHHHHHHHHHHHHSTTSEE--EEE-------E------BBTTS-HHHHH
T ss_pred HHHHHHHHHHcCCe--EEEeeCc-cCCc-CHHHHHHHHHHHHHhccCCeE--EEE-------e------cCCccchhHHH
Confidence 66777888888986 4443 43 3332 2334455666652 333444 331 0 11222334456
Q ss_pred HHHHHcCCcEEEcC
Q 038230 444 TAGVLGGANIVRVH 457 (480)
Q Consensus 444 ~~a~~~Ga~IlRvH 457 (480)
..|++.|++++.+.
T Consensus 200 laA~~aGa~~id~t 213 (237)
T PF00682_consen 200 LAALEAGADRIDGT 213 (237)
T ss_dssp HHHHHTT-SEEEEB
T ss_pred HHHHHcCCCEEEcc
Confidence 67889999998764
No 70
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.79 E-value=0.12 Score=51.91 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=105.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE---------
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--------- 292 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--------- 292 (480)
|-+.--+..++.++-++.++.+.+.|.+.|++|..+..| ++.+. ++.+++... .+..+
T Consensus 8 DG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~--------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~ 74 (273)
T cd07941 8 DGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP--------KDTEF----FARAKKLKL-KHAKLAAFGSTRRA 74 (273)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCH--------HHHHH----HHHHHHcCC-CCcEEEEEeccccc
Confidence 344444567899999999999999999999998633222 23322 333332210 01121
Q ss_pred EEeCCCHHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcC---CCCCCcccccc
Q 038230 293 SVDTFYSKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHM---RGDPSTMQNEE 352 (480)
Q Consensus 293 SIDT~~~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~---~g~p~~~~~~~ 352 (480)
.++..+...++.+++.|++.|+-+... ... .++++.+++.|..+.+..+ .+.. .
T Consensus 75 ~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~------~ 148 (273)
T cd07941 75 GVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYK------A 148 (273)
T ss_pred CCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCC------C
Confidence 223444567888999999977743211 001 3467788888987766322 2111 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-EecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCC
Q 038230 353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRII-IDPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNR 429 (480)
Q Consensus 353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-lDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~ 429 (480)
+ .+++.+.++.+.++|.. .|. -|. +|. -++.+..++++.++ .++.|+ |+- .
T Consensus 149 ~----------~~~~~~~~~~~~~~g~~--~i~l~DT-~G~-~~P~~v~~lv~~l~~~~~~~~l--~~H-------~--- 202 (273)
T cd07941 149 N----------PEYALATLKAAAEAGAD--WLVLCDT-NGG-TLPHEIAEIVKEVRERLPGVPL--GIH-------A--- 202 (273)
T ss_pred C----------HHHHHHHHHHHHhCCCC--EEEEecC-CCC-CCHHHHHHHHHHHHHhCCCCee--EEE-------e---
Confidence 0 15667888888889986 454 465 332 23344455555552 233443 321 0
Q ss_pred CCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230 430 PSADERDPATIASITAGVLGGANIVRV 456 (480)
Q Consensus 430 ~~~~~r~~~t~a~~~~a~~~Ga~IlRv 456 (480)
.+..+...|-+..|++.|++.+.+
T Consensus 203 ---Hnd~Gla~An~laA~~aGa~~id~ 226 (273)
T cd07941 203 ---HNDSGLAVANSLAAVEAGATQVQG 226 (273)
T ss_pred ---cCCCCcHHHHHHHHHHcCCCEEEE
Confidence 112233344455677889988764
No 71
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.78 E-value=0.033 Score=53.18 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHH--HHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSK--VASEAV 306 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~--v~~aaL 306 (480)
.+.+++++.++.+ +.|.++|.+|-.-+.++. .++|+.+++.. .+..+-+|+ .+|. .++++.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g------------~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~ 73 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIKNEG------------IEAVKEMKEAF--PDRKVLADLKTMDAGEYEAEQAF 73 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC------------HHHHHHHHHHC--CCCEEEEEEeeccchHHHHHHHH
Confidence 5789999999999 999999999842211111 24566666542 256677786 4655 689999
Q ss_pred HcCCCEEecCCCCCC---CchHHHHHHhcCCCEEEE-cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 307 GKGAHIVNDVSAGQL---DPDMYKVVAGLKVPYVAM-HMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 307 ~~G~~iINdVsg~~~---d~~m~~l~~~~~~~vVlm-h~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
++|+++|. +-+... ..++++.++++|.++++- ++ |.| ..+.+..+.+.|++
T Consensus 74 ~~Gad~i~-vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~---~~t-------------------~~~~~~~~~~~g~d-- 128 (206)
T TIGR03128 74 AAGADIVT-VLGVADDATIKGAVKAAKKHGKEVQVDLIN---VKD-------------------KVKRAKELKELGAD-- 128 (206)
T ss_pred HcCCCEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEecC---CCC-------------------hHHHHHHHHHcCCC--
Confidence 99999997 444431 157889999999988863 33 211 11334445667886
Q ss_pred CEEEecCCC
Q 038230 383 RIIIDPGLG 391 (480)
Q Consensus 383 ~IilDPgiG 391 (480)
=|-+.||++
T Consensus 129 ~v~~~pg~~ 137 (206)
T TIGR03128 129 YIGVHTGLD 137 (206)
T ss_pred EEEEcCCcC
Confidence 667788763
No 72
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.65 E-value=0.29 Score=49.53 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=108.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCH
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISE-GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYS 299 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~-GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~ 299 (480)
|-+--.|.+++.++-++.++.+++. |.+.|++|.-+ +++ +|.+.+..+.+.-.......++.++ + ..+.
T Consensus 7 DG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~-------~s~-~e~~av~~~~~~~~~~~~~~~~~~~a~-~~~~ 77 (280)
T cd07945 7 DGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASAR-------VSE-GEFEAVQKIIDWAAEEGLLDRIEVLGF-VDGD 77 (280)
T ss_pred CcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCC-------CCH-HHHHHHHHHHHHhhhhccccCcEEEEe-cCcH
Confidence 4445556788999999999998655 99999999521 333 5556655555432111000022332 3 2456
Q ss_pred HHHHHHHHcCCCEEecCCCCC---------CC-c-------hHHHHHHhcCCCEEEEcC-CCCCCccccccccchhhHHH
Q 038230 300 KVASEAVGKGAHIVNDVSAGQ---------LD-P-------DMYKVVAGLKVPYVAMHM-RGDPSTMQNEENLQYDDVCK 361 (480)
Q Consensus 300 ~v~~aaL~~G~~iINdVsg~~---------~d-~-------~m~~l~~~~~~~vVlmh~-~g~p~~~~~~~~~~~~~v~~ 361 (480)
.-++.|++.|++.|+=+-... .. + ++++.+++.|..+.+.-+ -|.|-. .+
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r----~~-------- 145 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMR----DS-------- 145 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCc----CC--------
Confidence 789999999999777442110 01 2 347788888876664332 222210 11
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCcEEEeeccccccccccCCCCcCcccHH
Q 038230 362 QVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAPILIGPSRKRFLGEICNRPSADERDPA 438 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~ 438 (480)
.+++.+.++.+.++|+. .|.+ |- +|... +.+-.++++.++ .++.|+- + +. .+..+.
T Consensus 146 --~~~~~~~~~~~~~~G~~--~i~l~DT-~G~~~-P~~v~~l~~~l~~~~~~~~i~--~-------H~------Hnd~Gl 204 (280)
T cd07945 146 --PDYVFQLVDFLSDLPIK--RIMLPDT-LGILS-PFETYTYISDMVKRYPNLHFD--F-------HA------HNDYDL 204 (280)
T ss_pred --HHHHHHHHHHHHHcCCC--EEEecCC-CCCCC-HHHHHHHHHHHHhhCCCCeEE--E-------Ee------CCCCCH
Confidence 15677888888999986 4443 54 33322 334556666652 3345542 2 10 112233
Q ss_pred HHHHHHHHHHcCCcEEEc
Q 038230 439 TIASITAGVLGGANIVRV 456 (480)
Q Consensus 439 t~a~~~~a~~~Ga~IlRv 456 (480)
..|-+..|++.|++.+.+
T Consensus 205 a~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 205 AVANVLAAVKAGIKGLHT 222 (280)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 344455677788887764
No 73
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.61 E-value=0.19 Score=50.46 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=113.5
Q ss_pred EEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 216 ILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 216 IlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
|+-.|| |.+.--+.+++.++.++.++.+.+.|.+.|.+|. |.+ + +++.+.+..+. .+... ..+ .+.
T Consensus 3 I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~----P~~---~-~~~~~~~~~l~-~~~~~---~~v-~~~ 69 (262)
T cd07948 3 IIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTS----PAA---S-PQSRADCEAIA-KLGLK---AKI-LTH 69 (262)
T ss_pred EEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEEC----CCC---C-HHHHHHHHHHH-hCCCC---CcE-EEE
Confidence 344443 5666667789999999999999999999999995 432 1 23344332222 22111 233 444
Q ss_pred eCCCHHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcCC--CCCCccccccccc
Q 038230 295 DTFYSKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHMR--GDPSTMQNEENLQ 355 (480)
Q Consensus 295 DT~~~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~~--g~p~~~~~~~~~~ 355 (480)
=..+.+-++.|++.|++.|+=..+. ... .++++.+++.|..+.+..+. +.|
T Consensus 70 ~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~---------- 139 (262)
T cd07948 70 IRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD---------- 139 (262)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC----------
Confidence 4678889999999999987743211 101 23456777788777754432 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcC
Q 038230 356 YDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSAD 433 (480)
Q Consensus 356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~ 433 (480)
.+++.+.++.+.++|.. +|.+ |. +|.. ++.+-.++++.++ ..+.|+ |+ +. .
T Consensus 140 --------~~~l~~~~~~~~~~g~~--~i~l~Dt-~G~~-~P~~v~~~~~~~~~~~~~~i--~~-------H~------H 192 (262)
T cd07948 140 --------LVDLLRVYRAVDKLGVN--RVGIADT-VGIA-TPRQVYELVRTLRGVVSCDI--EF-------HG------H 192 (262)
T ss_pred --------HHHHHHHHHHHHHcCCC--EEEECCc-CCCC-CHHHHHHHHHHHHHhcCCeE--EE-------EE------C
Confidence 14456777788888986 5554 54 3322 2334455555552 344554 32 11 1
Q ss_pred cccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 434 ERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 434 ~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
+-.+...+-+..|++.|++++.+.=
T Consensus 193 n~~Gla~an~~~a~~aG~~~vd~s~ 217 (262)
T cd07948 193 NDTGCAIANAYAALEAGATHIDTTV 217 (262)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEec
Confidence 1223344445667889999876643
No 74
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.59 E-value=1.2 Score=46.45 Aligned_cols=187 Identities=22% Similarity=0.312 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~ 308 (480)
-+.+.+++.|+++.+.||+++-.|..-.| |.+-.-..++.++.+ ....+. .++|+.-+-++++.++.+.+.
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L----~~~~~~---~Gl~v~tev~d~~~~~~l~~~ 176 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLL----AEAREE---TGLPIVTEVMDPRDVELVAEY 176 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHH----HHHHHH---cCCcEEEeeCCHHHHHHHHHh
Confidence 57899999999999999998877765433 322111124445433 333333 499999999999999999998
Q ss_pred CCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE-E
Q 038230 309 GAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII-I 386 (480)
Q Consensus 309 G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii-l 386 (480)
+|++- |-+.+ ....+++.+++.+.||++-- |.-.|+ +.+...++.+...|-+ +++ +
T Consensus 177 -vd~lq-IgAr~~~N~~LL~~va~~~kPViLk~--G~~~ti----------------~E~l~A~e~i~~~GN~--~viL~ 234 (335)
T PRK08673 177 -VDILQ-IGARNMQNFDLLKEVGKTNKPVLLKR--GMSATI----------------EEWLMAAEYILAEGNP--NVILC 234 (335)
T ss_pred -CCeEE-ECcccccCHHHHHHHHcCCCcEEEeC--CCCCCH----------------HHHHHHHHHHHHcCCC--eEEEE
Confidence 88776 54443 24679999999999999843 322221 2334566677788875 544 4
Q ss_pred ecCC-CCcc--ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCc--EEEcCC
Q 038230 387 DPGL-GFSK--KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGAN--IVRVHN 458 (480)
Q Consensus 387 DPgi-Gf~k--~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~--IlRvHd 458 (480)
.=|+ .|.. ...-++..+..++ .+++|+++=.| +-.| .|..... ++..|+..||+ |+-+|.
T Consensus 235 erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~s------H~~G-----~~~~v~~-~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 235 ERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPS------HATG-----KRDLVEP-LALAAVAAGADGLIVEVHP 300 (335)
T ss_pred ECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCC------CCCc-----cccchHH-HHHHHHHhCCCEEEEEecC
Confidence 5466 5622 2233455555553 46899865222 1112 2323222 24567788999 999998
No 75
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=96.58 E-value=0.17 Score=56.41 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=116.3
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--C--------
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--T-------- 296 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T-------- 296 (480)
++..++.++-+..|..+.+.|.+.|++|+.+|.+-+-....+++|+++..+-+.+. +.+++.= .
T Consensus 14 ~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~------~~~l~~L~Rg~N~~G~~~ 87 (582)
T TIGR01108 14 FATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP------NTPLQMLLRGQNLLGYRH 87 (582)
T ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC------CCEEEEEEcccccccccc
Confidence 34467889999999999999999999998887764322223467888755433222 3444321 1
Q ss_pred C----CHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHH
Q 038230 297 F----YSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASEL 367 (480)
Q Consensus 297 ~----~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l 367 (480)
| -.+-++.|+++|+++|+=....+.. ...++.+++.|..+.. +.+. .|.. + .+++
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~----------~-----~~~~ 151 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-SPVH----------T-----LETY 151 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-CCCC----------C-----HHHH
Confidence 1 2334677899999998766555422 3467788888876553 2322 3421 1 1567
Q ss_pred HHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA 445 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~ 445 (480)
.+.++.+.++|.. .|.| |. .|.. ++.+-.++++.++ ..+.|+=+ |+ .+-.+...|-+..
T Consensus 152 ~~~~~~~~~~Gad--~I~i~Dt-~G~~-~P~~v~~lv~~lk~~~~~pi~~-H~--------------Hnt~Gla~An~la 212 (582)
T TIGR01108 152 LDLAEELLEMGVD--SICIKDM-AGIL-TPKAAYELVSALKKRFGLPVHL-HS--------------HATTGMAEMALLK 212 (582)
T ss_pred HHHHHHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHHhCCCceEE-Ee--------------cCCCCcHHHHHHH
Confidence 7888888999986 4444 55 3332 2344566677763 34566422 11 1222334444566
Q ss_pred HHHcCCcEEEcCC
Q 038230 446 GVLGGANIVRVHN 458 (480)
Q Consensus 446 a~~~Ga~IlRvHd 458 (480)
|++.||+++.+.=
T Consensus 213 AveaGa~~vd~ai 225 (582)
T TIGR01108 213 AIEAGADGIDTAI 225 (582)
T ss_pred HHHhCCCEEEecc
Confidence 8888998887643
No 76
>TIGR03586 PseI pseudaminic acid synthase.
Probab=96.57 E-value=0.46 Score=49.27 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC--------C-C-----CC-CCCCCHHHHHHH-------HHHHHHHHHcCCcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS--------T-R-----PM-ATKISAEKELER-------LIPVLEAVLTMPEME 288 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--------t-r-----P~-a~~v~~~eE~~r-------l~~vi~~l~~~~~~~ 288 (480)
.|.+.|.+.++...++|||.+=...-. . . ++ ....+.-+.+++ ...+.+.-++ .
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~----~ 89 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKE----L 89 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHH----h
Confidence 478899999999999999975443110 0 0 00 000121122222 1222333333 3
Q ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230 289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY 368 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~ 368 (480)
++++.-.-++.+.++...+.|++++.=-|+.-..-.+++.+++.|.||++-. |.. |+ ++..
T Consensus 90 Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilst--G~~-t~----------------~Ei~ 150 (327)
T TIGR03586 90 GLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMST--GIA-TL----------------EEIQ 150 (327)
T ss_pred CCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEEC--CCC-CH----------------HHHH
Confidence 8999999999999999989999999855654434679999999999999733 432 32 3345
Q ss_pred HHHHHHHHCCCCCCCEEEecCC-CCcc-ChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230 369 SKVRDAELSGIPAWRIIIDPGL-GFSK-KAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA 445 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~IilDPgi-Gf~k-~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~ 445 (480)
..++.+.+.|.+ +|+|==++ +|.. ...-|+..|..++ .+++|+ |.|= +-+| . .++..
T Consensus 151 ~Av~~i~~~g~~--~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pV--G~SD-----Ht~G----------~-~~~~a 210 (327)
T TIGR03586 151 EAVEACREAGCK--DLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPV--GLSD-----HTLG----------I-LAPVA 210 (327)
T ss_pred HHHHHHHHCCCC--cEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCE--EeeC-----CCCc----------h-HHHHH
Confidence 677777888875 66663333 3432 2244566666663 467776 5541 1111 1 34567
Q ss_pred HHHcCCcEEEcCC
Q 038230 446 GVLGGANIVRVHN 458 (480)
Q Consensus 446 a~~~Ga~IlRvHd 458 (480)
|+..||+||-.|=
T Consensus 211 Ava~GA~iIEkH~ 223 (327)
T TIGR03586 211 AVALGACVIEKHF 223 (327)
T ss_pred HHHcCCCEEEeCC
Confidence 8889999999996
No 77
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=96.57 E-value=0.16 Score=55.52 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=112.2
Q ss_pred EEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCcCC
Q 038230 214 MGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT----MPEME 288 (480)
Q Consensus 214 mGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~----~~~~~ 288 (480)
+=|+-.|+ |-.--.|..++.++-++.|+.+.+.|.|+|++|. |.+ .++|.+.+..+.+.+.+ .....
T Consensus 85 V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~----Pa~----s~~e~e~i~~i~~~~~~~~~~~~~l~ 156 (503)
T PLN03228 85 VRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGF----PGS----SEEEFEAVKTIAKTVGNEVDEETGYV 156 (503)
T ss_pred eEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHHHHHHHHHHHHhcccccccccccc
Confidence 44667764 5666667789999999999999999999999996 322 23555554433333211 00001
Q ss_pred CCeEEEeCCCHHHHHHHHHc----CCCEEe---cCCCCC------CC--------chHHHHHHhcCCCEEEEcC-CCCCC
Q 038230 289 GKLVSVDTFYSKVASEAVGK----GAHIVN---DVSAGQ------LD--------PDMYKVVAGLKVPYVAMHM-RGDPS 346 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~----G~~iIN---dVsg~~------~d--------~~m~~l~~~~~~~vVlmh~-~g~p~ 346 (480)
....+.-..+.+-++.|+++ |++.|+ .+|-.. .. .++++.++++|...|.... .+ .
T Consensus 157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa-~- 234 (503)
T PLN03228 157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDG-G- 234 (503)
T ss_pred eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccc-c-
Confidence 12345555666677888776 555555 222100 00 2467788888875333222 11 1
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCc-EEEeeccccc
Q 038230 347 TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAP-ILIGPSRKRF 422 (480)
Q Consensus 347 ~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~P-il~G~SrKsf 422 (480)
+. + .+++.+.++.+.++|.. +|.+ |. +|.. ++.+..++++.++ .++.+ +.+++-
T Consensus 235 ----Rt-----d-----~efl~~~~~~a~~~Gad--~I~l~DT-vG~~-tP~~v~~lV~~l~~~~~~~~~i~I~~H---- 292 (503)
T PLN03228 235 ----RS-----D-----KEFLCKILGEAIKAGAT--SVGIADT-VGIN-MPHEFGELVTYVKANTPGIDDIVFSVH---- 292 (503)
T ss_pred ----cc-----C-----HHHHHHHHHHHHhcCCC--EEEEecC-CCCC-CHHHHHHHHHHHHHHhccccCceeEec----
Confidence 11 1 16778888899999986 4433 55 2322 2334455555552 22222 333321
Q ss_pred cccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 423 LGEICNRPSADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 423 i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
.- .++ +...|-+..|++.||+.+-+.
T Consensus 293 -----~H---ND~-GlAvANslaAi~aGa~~Vd~T 318 (503)
T PLN03228 293 -----CH---NDL-GLATANTIAGICAGARQVEVT 318 (503)
T ss_pred -----cc---CCc-ChHHHHHHHHHHhCCCEEEEe
Confidence 11 122 333344556778899888753
No 78
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.54 E-value=0.35 Score=50.55 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=103.2
Q ss_pred EEEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 213 VMGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK--ISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 213 imGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
-+=|+..|| |-+--.|.+++.++=++.|+.+.+.|.+.|++|--. .|..-| -+.+|.++++ +.+.. ..
T Consensus 46 ~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i----~~~~~----~~ 116 (347)
T PLN02746 46 FVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAV----RNLEG----AR 116 (347)
T ss_pred ceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHH----HhccC----Cc
Confidence 355778775 677777888999999999999999999999999422 332111 1122223333 22211 12
Q ss_pred CeEEEeCCCHHHHHHHHHcCCCEEecCCC-----------CCCC------chHHHHHHhcCCCEE--EEcCCCCCCcccc
Q 038230 290 KLVSVDTFYSKVASEAVGKGAHIVNDVSA-----------GQLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQN 350 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~G~~iINdVsg-----------~~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~ 350 (480)
++ .+ ..+.+-++.|++.|++.|+=+-. ...+ .++++.++++|..+. ++..-|-|..-.
T Consensus 117 ~~-~l-~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r- 193 (347)
T PLN02746 117 FP-VL-TPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP- 193 (347)
T ss_pred ee-EE-cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC-
Confidence 22 23 56999999999999997774411 1101 247788888998775 444444443211
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230 351 EENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 351 ~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l 406 (480)
.+ .+++.+.++.+.++|.. +|.| |. .|... +.+-.++++.+
T Consensus 194 -~~----------~~~l~~~~~~~~~~Gad--~I~l~DT-~G~a~-P~~v~~lv~~l 235 (347)
T PLN02746 194 -VP----------PSKVAYVAKELYDMGCY--EISLGDT-IGVGT-PGTVVPMLEAV 235 (347)
T ss_pred -CC----------HHHHHHHHHHHHHcCCC--EEEecCC-cCCcC-HHHHHHHHHHH
Confidence 11 15677888889999987 5544 65 33322 44556666666
No 79
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=96.53 E-value=0.08 Score=52.23 Aligned_cols=246 Identities=20% Similarity=0.217 Sum_probs=137.1
Q ss_pred cccccccccccCCC---CCcEEEEEEecCCCCCCCCCcc--------CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC
Q 038230 195 KRVLPIGNLLWDWS---LKTSVMGILNLTPDSFSDGGKF--------QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT 263 (480)
Q Consensus 195 ~r~~~~~~~~~~~~---~~~~imGIlN~tpDSFsdgg~~--------~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~ 263 (480)
..++.+++.+++.. -+|.+.|-+ ||.+-+. +|.+.|-+..+.| +++.|. ..+|.-.
T Consensus 11 Q~V~eI~GvKiGGqpGEyPTvLagTI------FY~~HkIVeDe~kGiFDr~aAE~Li~~q-e~lsD~------TGNP~~~ 77 (313)
T COG1962 11 QKVFEIAGVKIGGQPGEYPTVLAGTI------FYAKHKIVEDEKKGIFDREAAEALINTQ-EELSDK------TGNPHLV 77 (313)
T ss_pred ceEEeeeceEeCCcCCCCchheeeee------eeccceeeeccccccccHHHHHHHHHHH-HHhccc------cCCchhh
Confidence 45566777666542 246666633 6654332 4555555555544 444442 1234211
Q ss_pred -CCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----C---CCEEecCCCCCCCchHHHHHHhcC-
Q 038230 264 -KIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----G---AHIVNDVSAGQLDPDMYKVVAGLK- 333 (480)
Q Consensus 264 -~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G---~~iINdVsg~~~d~~m~~l~~~~~- 333 (480)
.+. .+|-+.+. |+-+.+. ++.|+-|||...++=.+|.++ | ..+-|||+..- ++.=++.+++++
T Consensus 78 ~i~G~t~Eai~kY---iDfvadV---tDsPfliDSt~gevr~aaak~a~EvGladR~iyNSIn~si-~~~EieaL~eSd~ 150 (313)
T COG1962 78 QIFGETPEAIIKY---IDFVADV---TDSPFLIDSTEGEVRAAAAKYASEVGLADRAIYNSINASI-EDAEIEALAESDV 150 (313)
T ss_pred hhhcCCHHHHHHH---HHhheec---ccCceeecccchHHHHHHHhhhhhhchhhhhhhhccCccc-cHHHHHHHHhccc
Confidence 111 12334444 3334555 588999999999998888875 4 66999999876 455567777765
Q ss_pred -CCEEEEcCCCCCCccccccccchhhHHHHHHHH-HHHHHHHHHHCCCCCCCEEEecCC-----CCccChhHHHHHHHhc
Q 038230 334 -VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE-LYSKVRDAELSGIPAWRIIIDPGL-----GFSKKAEHNLDILLGL 406 (480)
Q Consensus 334 -~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~-l~~~i~~a~~~Gi~~~~IilDPgi-----Gf~k~~~~~~~~lr~l 406 (480)
+++||..+--+|.. ..+ -++++.-... -+-.++.+.++||. +-++|+-+ |-+......+ .++
T Consensus 151 eaaIVL~fn~md~sv-~gr-----l~ile~g~g~~~kGmLeiae~cGI~--~pliD~avtplg~Gagaa~r~~~-~vK-- 219 (313)
T COG1962 151 EAAIVLAFNPMDPSV-EGR-----LQILEKGAGTKEKGMLEIAEECGIK--KPLIDTAVTPLGSGAGAAVRATI-AVK-- 219 (313)
T ss_pred cceeEEEecCCCcch-hhH-----HHHHHhccccchhhHHHHHHHhCCC--ccccccccccCCCCcchhhhhhh-hhH--
Confidence 67887665323321 111 1111111101 12346788999998 88999943 2222222222 122
Q ss_pred ccCCCcEEEeeccc----cccccccCCC-Cc-CcccHHHHHHHHHHHHcCCcEEEc---CChHHHHHHHHHHHHHHh
Q 038230 407 AASHAPILIGPSRK----RFLGEICNRP-SA-DERDPATIASITAGVLGGANIVRV---HNIRDNLDAVKLCDSMLT 474 (480)
Q Consensus 407 ~~~g~Pil~G~SrK----sfi~~v~g~~-~~-~~r~~~t~a~~~~a~~~Ga~IlRv---HdV~e~~~al~~~~ai~~ 474 (480)
..+|+|+=-|+-|. .|+.+..+.. ++ .-.++++ ..+.+..|.|++.- .|.+..-.|+.|.+.+..
T Consensus 220 ~k~G~PvGsg~HN~psaWdwlr~~~kk~~e~~~~~Dvgs---n~vq~~a~~DfvLyGPIEna~~vfPa~amvD~~i~ 293 (313)
T COG1962 220 AKLGLPVGSGIHNAPSAWDWLREFKKKLPEAGAVCDVGS---NLVQQIAGGDFVLYGPIENARMVFPAVAMVDIMIA 293 (313)
T ss_pred HhcCCccCcccccCchHHHHHHHHHhhCccccccccHHH---HHHHHHhcCCeEEecchhhhhhhhhHHHHHHHHHH
Confidence 24799997777664 2333333321 11 1122333 34566678888764 456778888999998753
No 80
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.52 E-value=0.14 Score=55.97 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=117.6
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----------EeC
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----------VDT 296 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----------IDT 296 (480)
+...++.++.+..|..+-+.|.+.|++||.+|.+.+-....|++|+|+..+-+.+. +.++. .-.
T Consensus 20 ~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~------nt~lqmL~Rg~N~vGy~~ 93 (499)
T PRK12330 20 MATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMP------NSRLQMLLRGQNLLGYRH 93 (499)
T ss_pred cCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC------CCeEEEEEcccccCCccC
Confidence 33457889999999999999999999999988875444455788999865554443 23333 233
Q ss_pred CC----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHH
Q 038230 297 FY----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASEL 367 (480)
Q Consensus 297 ~~----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l 367 (480)
+. ..-++.|.++|.+++.=..+.++- ...++.+++.|.-+ .++.+. .|.. + .+++
T Consensus 94 y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-sp~~----------t-----~e~~ 157 (499)
T PRK12330 94 YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-SPIH----------T-----VEGF 157 (499)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-CCCC----------C-----HHHH
Confidence 33 345667777899987655555421 34567777777643 222221 2311 0 1667
Q ss_pred HHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cC--CCcEEEeeccccccccccCCCCcCcccHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-AS--HAPILIGPSRKRFLGEICNRPSADERDPATIASI 443 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~--g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~ 443 (480)
.+.++.+.++|+. .|.| |. .|..+ +.+..++++.++ .. ++|+=+ |. .+..+...+-+
T Consensus 158 ~~~a~~l~~~Gad--~I~IkDt-aGll~-P~~~~~LV~~Lk~~~~~~ipI~~-H~--------------Hnt~GlA~An~ 218 (499)
T PRK12330 158 VEQAKRLLDMGAD--SICIKDM-AALLK-PQPAYDIVKGIKEACGEDTRINL-HC--------------HSTTGVTLVSL 218 (499)
T ss_pred HHHHHHHHHcCCC--EEEeCCC-ccCCC-HHHHHHHHHHHHHhCCCCCeEEE-Ee--------------CCCCCcHHHHH
Confidence 7888888999986 4443 54 33332 344566777763 33 567643 11 11223344445
Q ss_pred HHHHHcCCcEEEcCC
Q 038230 444 TAGVLGGANIVRVHN 458 (480)
Q Consensus 444 ~~a~~~Ga~IlRvHd 458 (480)
..|++.||+++.+-=
T Consensus 219 laAieAGad~vDtai 233 (499)
T PRK12330 219 MKAIEAGVDVVDTAI 233 (499)
T ss_pred HHHHHcCCCEEEeec
Confidence 568889998887643
No 81
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.51 E-value=1.1 Score=46.58 Aligned_cols=187 Identities=21% Similarity=0.157 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC----CCCCCC-----------CCCHHHHH-------HHHHHHHHHHHcCCcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS----TRPMAT-----------KISAEKEL-------ERLIPVLEAVLTMPEME 288 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS----trP~a~-----------~v~~~eE~-------~rl~~vi~~l~~~~~~~ 288 (480)
.|.+-|.+..+...++|||.+=+=--. +.+... ..+.-+.+ +++.++.+..++.
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~---- 88 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK---- 88 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh----
Confidence 478889999999999999977542100 000000 00111111 2333334444443
Q ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230 289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY 368 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~ 368 (480)
++++.-.-++.+.++...+.|++++-=-|+.-.+-.+++.+++.|-||++.. |.. |+ ++..
T Consensus 89 Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt--Gma-tl----------------~Ei~ 149 (329)
T TIGR03569 89 GIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILST--GMA-TL----------------EEIE 149 (329)
T ss_pred CCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEEC--CCC-CH----------------HHHH
Confidence 8999999999999999999999998855544345779999999999998843 432 22 3445
Q ss_pred HHHHHHHHCCCCCCCEEE-ecCCCCc-cChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230 369 SKVRDAELSGIPAWRIII-DPGLGFS-KKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA 445 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~Iil-DPgiGf~-k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~ 445 (480)
..++.+.+.|.+..+|+| =-..++. ....-|+..|..++ .+++|+ |.|= +- .+. .++..
T Consensus 150 ~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pV--G~Sd-----Ht----------~G~-~~~~a 211 (329)
T TIGR03569 150 AAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPV--GYSD-----HT----------LGI-EAPIA 211 (329)
T ss_pred HHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCE--EECC-----CC----------ccH-HHHHH
Confidence 777778888975324655 2223332 22345666666663 467765 6651 11 112 34567
Q ss_pred HHHcCCcEEEcCC
Q 038230 446 GVLGGANIVRVHN 458 (480)
Q Consensus 446 a~~~Ga~IlRvHd 458 (480)
|+..||+||-.|-
T Consensus 212 AvalGA~iIEkH~ 224 (329)
T TIGR03569 212 AVALGATVIEKHF 224 (329)
T ss_pred HHHcCCCEEEeCC
Confidence 8889999999997
No 82
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.49 E-value=0.16 Score=54.89 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE---E-------eCCCHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS---V-------DTFYSK 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS---I-------DT~~~~ 300 (480)
++.++.+..|..+-+.|...|+++|.+|..-+-....|..|+|+..+-+.+. +.++. . -.|.-+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~------nt~lqmLlRG~n~vgy~~ypdd 105 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLP------NTRLQMLLRGQNLLGYRHYADD 105 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCC------CCceeeeeccccccCccCCcch
Confidence 7889999999999999999999999888774334445677998765554443 23332 1 111124
Q ss_pred H----HHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHHHHHHHHHHHH
Q 038230 301 V----ASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKV 371 (480)
Q Consensus 301 v----~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i 371 (480)
| ++.|.+.|.+++--.+..++- ...++.+++.|..+. ++++. .|.. -.+++.+.+
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~-sp~~---------------t~~y~~~~a 169 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT-SPVH---------------TLNYYLSLV 169 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe-CCcC---------------cHHHHHHHH
Confidence 4 555666799998877777632 346778888887643 44443 3421 126778888
Q ss_pred HHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHc
Q 038230 372 RDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLG 449 (480)
Q Consensus 372 ~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~ 449 (480)
+.+.++|.. .|.| |. .|.. ++.+-.++++.++ ..++|+=+ |+ .+..+...+-+..|++.
T Consensus 170 ~~l~~~Gad--~I~IkDt-aG~l-~P~~v~~Lv~alk~~~~~pi~~-H~--------------Hnt~GlA~An~laAieA 230 (468)
T PRK12581 170 KELVEMGAD--SICIKDM-AGIL-TPKAAKELVSGIKAMTNLPLIV-HT--------------HATSGISQMTYLAAVEA 230 (468)
T ss_pred HHHHHcCCC--EEEECCC-CCCc-CHHHHHHHHHHHHhccCCeEEE-Ee--------------CCCCccHHHHHHHHHHc
Confidence 889999986 5544 55 2322 2344456666663 45666532 11 12223344445667788
Q ss_pred CCcEEEcC
Q 038230 450 GANIVRVH 457 (480)
Q Consensus 450 Ga~IlRvH 457 (480)
||+++.+-
T Consensus 231 Gad~vD~a 238 (468)
T PRK12581 231 GADRIDTA 238 (468)
T ss_pred CCCEEEee
Confidence 88887664
No 83
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.43 E-value=0.047 Score=51.73 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--CH--HHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--YS--KVASEAV 306 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~~--~v~~aaL 306 (480)
.+.+++.+.++.+.+. .++|.+|..-..+.. ...++.+++.. +++|+.+|.. ++ ..++++.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g------------~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~ 74 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTPLIKSEG------------MEAVRALREAF--PDKIIVADLKTADAGALEAEMAF 74 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC------------HHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHH
Confidence 5688999999999888 999999863322111 24566666542 3778887622 22 3578899
Q ss_pred HcCCCEEecCCCCC--CCchHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230 307 GKGAHIVNDVSAGQ--LDPDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383 (480)
Q Consensus 307 ~~G~~iINdVsg~~--~d~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~ 383 (480)
++|+++|.--.... ...++++.++++|+.+++ ++.-.+| .+..+ +.+.|.+ -
T Consensus 75 ~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~----------------------~e~~~-~~~~~~d--~ 129 (202)
T cd04726 75 KAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDP----------------------EKRAK-LLKLGVD--I 129 (202)
T ss_pred hcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCH----------------------HHHHH-HHHCCCC--E
Confidence 99999998332111 125688999999998886 3542222 12222 5566776 5
Q ss_pred EEEecCCCCccC-hhHHHHHHHhcc-cCCCcEEEe
Q 038230 384 IIIDPGLGFSKK-AEHNLDILLGLA-ASHAPILIG 416 (480)
Q Consensus 384 IilDPgiGf~k~-~~~~~~~lr~l~-~~g~Pil~G 416 (480)
+.+.|++.-+.. .....+.+++++ ..++|++++
T Consensus 130 v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 164 (202)
T cd04726 130 VILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVA 164 (202)
T ss_pred EEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEE
Confidence 677786522111 223345566553 267888764
No 84
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.34 E-value=0.11 Score=50.27 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH-- 311 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~-- 311 (480)
+++.+.|++..+.|+|.|-||| |+. ++ .+.+.++++.+++. +++|+-+-=.+++.+.. ++|
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGG-S~g-----vt----~~~~~~~v~~ik~~---~~lPvilfp~~~~~i~~----~aD~~ 73 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGG-SLG-----IV----ESNLDQTVKKIKKI---TNLPVILFPGNVNGLSR----YADAV 73 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC-cCC-----CC----HHHHHHHHHHHHhh---cCCCEEEECCCccccCc----CCCEE
Confidence 5677788899999999999997 322 22 23445567777875 48999987666665543 344
Q ss_pred EEecCCCCCCCc--------hHHHHHHhcCC-----CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC
Q 038230 312 IVNDVSAGQLDP--------DMYKVVAGLKV-----PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG 378 (480)
Q Consensus 312 iINdVsg~~~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G 378 (480)
++.++-... ++ +-++++++++. +|+++...+.-....+ .+.-.+...++ ...-...++.+|
T Consensus 74 ~~~sllns~-~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~-a~~ip~~~~e~----~~~~a~aa~~~G 147 (205)
T TIGR01769 74 FFMSLLNSA-DTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGK-AREIPYNKPEI----AAAYCLAAKYFG 147 (205)
T ss_pred EEEEeecCC-CcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecC-cccCCCCCHHH----HHHHHHHHHHcC
Confidence 333432222 23 24556688886 6666665432111100 00000111222 234445667899
Q ss_pred CCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEee
Q 038230 379 IPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGP 417 (480)
Q Consensus 379 i~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~ 417 (480)
++ -|+++=+-|+.+. .+.++++++ +..+.|+.+|-
T Consensus 148 ~~--~i~Le~~sGa~~~--v~~e~i~~Vk~~~~~Pv~vGG 183 (205)
T TIGR01769 148 MK--WVYLEAGSGASYP--VNPETISLVKKASGIPLIVGG 183 (205)
T ss_pred CC--EEEEEcCCCCCCC--CCHHHHHHHHHhhCCCEEEeC
Confidence 98 8999988888433 235566666 34689999984
No 85
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.27 E-value=0.55 Score=51.59 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCHH
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYSK 300 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~~ 300 (480)
|-+---|..++.++-++.|+.+.+.|.+.|++|..+..| .|++.+..+.+.. .+..|+ .-..+.+
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~--------~d~~~v~~i~~~~------~~~~i~a~~r~~~~ 79 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP--------GDFEAVKRIARTV------KNSTVCGLARAVKK 79 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh--------HHHHHHHHHHhhC------CCCEEEEEccCCHH
Confidence 333334566899999999999999999999999643322 3455543333222 133443 3335677
Q ss_pred HHHHHH----HcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhH
Q 038230 301 VASEAV----GKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDV 359 (480)
Q Consensus 301 v~~aaL----~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v 359 (480)
-++.++ +.|++.|.=..... .. .+.++.++++|..|......+... +
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~------d------ 147 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRT------D------ 147 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCC------C------
Confidence 788888 45766555322211 00 246778888898877655443211 1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230 360 CKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 360 ~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l 406 (480)
.+++.+.++.+.++|.. .|.| |. +|.. ++.+..++++.+
T Consensus 148 ----~~~l~~~~~~~~~~Ga~--~i~l~DT-vG~~-~P~~~~~~i~~l 187 (513)
T PRK00915 148 ----LDFLCRVVEAAIDAGAT--TINIPDT-VGYT-TPEEFGELIKTL 187 (513)
T ss_pred ----HHHHHHHHHHHHHcCCC--EEEEccC-CCCC-CHHHHHHHHHHH
Confidence 16777888889999975 4444 43 3332 344455566665
No 86
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.23 E-value=0.049 Score=52.97 Aligned_cols=97 Identities=15% Similarity=0.334 Sum_probs=75.1
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
-.++.|+... +.+++++.++.+.+.|.++|.|+..+ |+ .. ..|+.+++.+ .++
T Consensus 15 ~~~iaV~r~~-----------~~~~a~~i~~al~~~Gi~~iEitl~~--~~---------~~---~~I~~l~~~~--p~~ 67 (212)
T PRK05718 15 GPVVPVIVIN-----------KLEDAVPLAKALVAGGLPVLEVTLRT--PA---------AL---EAIRLIAKEV--PEA 67 (212)
T ss_pred CCEEEEEEcC-----------CHHHHHHHHHHHHHcCCCEEEEecCC--cc---------HH---HHHHHHHHHC--CCC
Confidence 4567776543 57999999999999999999999632 32 11 2455556543 478
Q ss_pred eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230 291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYV 337 (480)
Q Consensus 291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vV 337 (480)
.|..+| .+++.++.|.++|++++-+-. .++++++.+++++++++
T Consensus 68 ~IGAGTVl~~~~a~~a~~aGA~FivsP~---~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 68 LIGAGTVLNPEQLAQAIEAGAQFIVSPG---LTPPLLKAAQEGPIPLI 112 (212)
T ss_pred EEEEeeccCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence 888888 578999999999999996543 36899999999999988
No 87
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=96.20 E-value=1.1 Score=46.16 Aligned_cols=207 Identities=17% Similarity=0.229 Sum_probs=131.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK 308 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~ 308 (480)
-.|.+.-+++..++.+.|+||+=+-. |+ .|.-+ .++.|++. .++|+--|- |++..+..+.+.
T Consensus 32 T~Dv~aTv~QI~~L~~aG~dIVRvtv----~~------~e~A~----A~~~Ik~~---~~vPLVaDiHf~~rla~~~~~~ 94 (361)
T COG0821 32 TADVEATVAQIKALERAGCDIVRVTV----PD------MEAAE----ALKEIKQR---LNVPLVADIHFDYRLALEAAEC 94 (361)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEec----CC------HHHHH----HHHHHHHh---CCCCEEEEeeccHHHHHHhhhc
Confidence 35899999999999999999999965 22 12222 35566666 489999985 788999999999
Q ss_pred CCCEEecCCCCCC---C--chHHHHHHhcCCCEEEEcCCCC-CCccccccccch-hhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 309 GAHIVNDVSAGQL---D--PDMYKVVAGLKVPYVAMHMRGD-PSTMQNEENLQY-DDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 309 G~~iINdVsg~~~---d--~~m~~l~~~~~~~vVlmh~~g~-p~~~~~~~~~~~-~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
|++-+- |+.++. + .++.+.|+++|.|+=+=-+-|. .+...+ .| ....+.+.+.....++.+++.|+.
T Consensus 95 g~~k~R-INPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~----ky~~pt~ealveSAl~~a~~~e~l~f~- 168 (361)
T COG0821 95 GVDKVR-INPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE----KYGGPTPEALVESALEHAELLEELGFD- 168 (361)
T ss_pred CcceEE-ECCcccCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHH----HhcCCCHHHHHHHHHHHHHHHHHCCCC-
Confidence 988654 444442 2 4688999999999977555442 333222 13 223455667777888999999998
Q ss_pred CCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcC-CcEEEcCCh
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGG-ANIVRVHNI 459 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~G-a~IlRvHdV 459 (480)
+|++-- =+.+....++..+.| +..++|+=+|+.-- |.. ..-..-+.+....++..| .|=+||-=.
T Consensus 169 -~i~iS~---K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEA-------G~~--~~G~VkSa~alg~LL~eGIGDTIRVSLt 235 (361)
T COG0821 169 -DIKVSV---KASDVQLMVAAYRLLAKRCDYPLHLGVTEA-------GMG--FKGIVKSAAALGALLSEGIGDTIRVSLT 235 (361)
T ss_pred -cEEEEE---EcCCHHHHHHHHHHHHHhcCCCcccceecc-------cCc--ccceehHHHHHHHHHHhcCCceEEEecC
Confidence 888753 123344445555555 46799998887411 211 112223344445555566 688887543
Q ss_pred HHHHHHHHHHHHH
Q 038230 460 RDNLDAVKLCDSM 472 (480)
Q Consensus 460 ~e~~~al~~~~ai 472 (480)
.+-.+-+++++.|
T Consensus 236 ~~P~~EV~V~~eI 248 (361)
T COG0821 236 ADPVEEVKVAQEI 248 (361)
T ss_pred CCchhhhHHHHHH
Confidence 3333334444443
No 88
>PRK09389 (R)-citramalate synthase; Provisional
Probab=95.90 E-value=0.98 Score=49.36 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=95.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230 222 DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV 301 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v 301 (480)
|-.---|..++.++-++.|+.+.+.|.++|++|..+ +.++|++.+..+.+. .. .....+.=....+-
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~--------~~~~d~e~v~~i~~~---~~--~~~i~a~~r~~~~d 78 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAI--------TSEGEREAIKAVTDE---GL--NAEICSFARAVKVD 78 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc--------CCHHHHHHHHHHHhc---CC--CcEEEeecccCHHH
Confidence 444444667899999999999999999999999633 234566665444421 11 11223333445788
Q ss_pred HHHHHHcCCCEEecCCCCCC---------C--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHH
Q 038230 302 ASEAVGKGAHIVNDVSAGQL---------D--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVA 364 (480)
Q Consensus 302 ~~aaL~~G~~iINdVsg~~~---------d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~ 364 (480)
+++|++.|++.|.-.-.... . .++++.++++|..+.+....+ +. .+ .
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~-~r-----~~----------~ 142 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDA-SR-----AD----------L 142 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC-CC-----CC----------H
Confidence 99999999887654332210 0 134567778887766644432 11 11 1
Q ss_pred HHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcE
Q 038230 365 SELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPI 413 (480)
Q Consensus 365 ~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pi 413 (480)
+++.+.++.+.++|.+ +|.| |. .|. -++.+..++++.++ ..++|+
T Consensus 143 ~~l~~~~~~~~~~Ga~--~i~l~DT-vG~-~~P~~~~~lv~~l~~~~~v~l 189 (488)
T PRK09389 143 DFLKELYKAGIEAGAD--RICFCDT-VGI-LTPEKTYELFKRLSELVKGPV 189 (488)
T ss_pred HHHHHHHHHHHhCCCC--EEEEecC-CCC-cCHHHHHHHHHHHHhhcCCeE
Confidence 6777888888899986 5544 43 332 22344455666662 334443
No 89
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.83 E-value=0.66 Score=45.23 Aligned_cols=137 Identities=21% Similarity=0.173 Sum_probs=81.5
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
+.++.+-..|+-.|- ..+.+..+..+++.++.||+.+|+-.. .+. .+.++-.+.+..+.+..++. ++
T Consensus 57 ~~i~~~~~~~~i~~p----~~~~~~~~~~v~~a~~~Ga~~v~~~~~---~~~--~~~~~~~~~i~~v~~~~~~~----g~ 123 (235)
T cd00958 57 PLIVKLNGSTSLSPK----DDNDKVLVASVEDAVRLGADAVGVTVY---VGS--EEEREMLEELARVAAEAHKY----GL 123 (235)
T ss_pred cEEEEECCCCCCCCC----CCCchhhhcCHHHHHHCCCCEEEEEEe---cCC--chHHHHHHHHHHHHHHHHHc----CC
Confidence 456666555665554 234455666788899999998877531 111 12333344454445444443 88
Q ss_pred eEEEeCCC----------HHHHHH----HHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCC-CCcccccccc
Q 038230 291 LVSVDTFY----------SKVASE----AVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGD-PSTMQNEENL 354 (480)
Q Consensus 291 pISIDT~~----------~~v~~a----aL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~-p~~~~~~~~~ 354 (480)
|+-||.+. ++.++. |.+.|+|+|-- +.. .+ +.+-++++....|+++.- |. ..|.
T Consensus 124 ~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~-~~~-~~~~~~~~i~~~~~~pvv~~G--G~~~~~~------ 193 (235)
T cd00958 124 PLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT-KYT-GDAESFKEVVEGCPVPVVIAG--GPKKDSE------ 193 (235)
T ss_pred CEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe-cCC-CCHHHHHHHHhcCCCCEEEeC--CCCCCCH------
Confidence 88888754 455554 77779999863 322 23 456666666778876653 32 1221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
+.+.+.+..+.++|..
T Consensus 194 ----------~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 194 ----------EEFLKMVYDAMEAGAA 209 (235)
T ss_pred ----------HHHHHHHHHHHHcCCc
Confidence 2345667777888886
No 90
>PRK07094 biotin synthase; Provisional
Probab=95.67 E-value=0.78 Score=46.93 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCcEEEEEEecCCC-----CCCC-----C--Ccc-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230 209 LKTSVMGILNLTPD-----SFSD-----G--GKF-QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 209 ~~~~imGIlN~tpD-----SFsd-----g--g~~-~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~ 275 (480)
.+..+.|++|+|.= +|.. + .++ .+++++++.++.+.+.|+..+-+.+.. .|.. ..+++.
T Consensus 35 ~~v~~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~-~~~~-------~~~~l~ 106 (323)
T PRK07094 35 DEVHLRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGE-DPYY-------TDEKIA 106 (323)
T ss_pred CEEEEEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCC-------CHHHHH
Confidence 45677889998842 2221 2 233 489999999999999999999986432 1211 145677
Q ss_pred HHHHHHHcCCcCCCCe--EEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHH
Q 038230 276 PVLEAVLTMPEMEGKL--VSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKV 328 (480)
Q Consensus 276 ~vi~~l~~~~~~~~~p--ISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l 328 (480)
.+++.|++. .++. +++-+...+.+++--++|++.++ ++-+..++++++.
T Consensus 107 ~l~~~i~~~---~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~-~glEs~~~~~~~~ 157 (323)
T PRK07094 107 DIIKEIKKE---LDVAITLSLGERSYEEYKAWKEAGADRYL-LRHETADKELYAK 157 (323)
T ss_pred HHHHHHHcc---CCceEEEecCCCCHHHHHHHHHcCCCEEE-eccccCCHHHHHH
Confidence 778888864 2444 45555678888887778988887 6554444555443
No 91
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.65 E-value=2.7 Score=42.03 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC---------CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGA---------QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~ 300 (480)
-+.+.+++.|+.+.+.||.+ .+|+ .-|.|.+ .....++=++. ++.+++. .++||.-|-.+++
T Consensus 13 Es~e~~~~~A~~lk~~~~~~-~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~i----L~~vk~~---~glpvvTeV~~~~ 84 (258)
T TIGR01362 13 ESEDHALRVAEKLKELTSKL-GVPFIFKSSFDKANRSSIHSFRGPGLEEGLKI----LQKVKEE---FGVPILTDVHESS 84 (258)
T ss_pred cCHHHHHHHHHHHHHHHHhc-CCCeEEecccCCCCCCCCCCCCCCCHHHHHHH----HHHHHHH---hCCceEEEeCCHH
Confidence 47788999999999988865 2321 2344432 22332344443 4566666 4999999999999
Q ss_pred HHHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 301 VASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
-++.+.++ +||+- |-+.+- .-+++.-+++.+-+|.+ .+|.--+. +.+...+++..+.|.
T Consensus 85 ~~~~vae~-vDilQ-IgArn~rn~~LL~a~g~t~kpV~l--KrG~~~t~----------------~e~l~aaeyi~~~Gn 144 (258)
T TIGR01362 85 QCEPVAEV-VDIIQ-IPAFLCRQTDLLVAAAKTGRIVNV--KKGQFLSP----------------WDMKNVVEKVLSTGN 144 (258)
T ss_pred HHHHHHhh-CcEEE-eCchhcchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCC
Confidence 99999999 88886 555331 24678888888877765 34432221 234466778888998
Q ss_pred CCCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeecccc-ccccccCCCCcCcccHHHHHHHHHHHHcCCc-
Q 038230 380 PAWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKR-FLGEICNRPSADERDPATIASITAGVLGGAN- 452 (480)
Q Consensus 380 ~~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKs-fi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~- 452 (480)
+ +|++=- |+-|+.+. ..++-++++ .++|+++=.|..- .=|. .|....-+|...... +-.|+..|+|
T Consensus 145 ~--~viLcERG~tf~y~r~~~D~~~ip~~k~---~~~PVi~DpSHsvq~pg~-~g~~s~G~r~~v~~l-a~AAvA~GaDG 217 (258)
T TIGR01362 145 K--NILLCERGTSFGYNNLVVDMRSLPIMRE---LGCPVIFDATHSVQQPGG-LGGASGGLREFVPTL-ARAAVAVGIDG 217 (258)
T ss_pred C--cEEEEeCCCCcCCCCcccchhhhHHHHh---cCCCEEEeCCccccCCCC-CCCCCCCcHHHHHHH-HHHHHHhCCCE
Confidence 6 777655 87674321 234555554 4899999776430 0000 111112345554332 3345556666
Q ss_pred -EEEcCC
Q 038230 453 -IVRVHN 458 (480)
Q Consensus 453 -IlRvHd 458 (480)
++-||.
T Consensus 218 l~iEvHp 224 (258)
T TIGR01362 218 LFMETHP 224 (258)
T ss_pred EEEEeCC
Confidence 888997
No 92
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.43 E-value=3.3 Score=41.57 Aligned_cols=193 Identities=17% Similarity=0.164 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC---------CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGA---------QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~ 300 (480)
-+.|.+++.|+.+.+.|+.+ .+|+ .-|.|.+ .....+|=++. ++.+++. .++||--|-.+++
T Consensus 21 Es~e~~~~~A~~lk~~~~~~-~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~----L~~vk~~---~GlpvvTeV~~~~ 92 (264)
T PRK05198 21 ESRDLALRIAEHLKEITDKL-GIPYVFKASFDKANRSSIHSFRGPGLEEGLKI----LQEVKET---FGVPVLTDVHEPE 92 (264)
T ss_pred cCHHHHHHHHHHHHHHHHhc-CCCeEEeccccCCCCCCCCCCCCCChHHHHHH----HHHHHHH---HCCceEEEeCCHH
Confidence 57888999999999999884 4652 2344432 22232344444 4566666 4999999999999
Q ss_pred HHHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 301 VASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
-++.+.++ +||+- |-+.+- .-+++.-+++.+.+|.+ .+|.--++ +.+...+++..+.|.
T Consensus 93 ~~~~v~~~-~DilQ-IgArn~rn~~LL~a~g~t~kpV~l--KrG~~~t~----------------~e~~~aaeyi~~~Gn 152 (264)
T PRK05198 93 QAAPVAEV-VDVLQ-IPAFLCRQTDLLVAAAKTGKVVNI--KKGQFLAP----------------WDMKNVVDKVREAGN 152 (264)
T ss_pred HHHHHHhh-CcEEE-ECchhcchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCC
Confidence 99999998 88886 554331 24688888888877765 34433222 234466778888898
Q ss_pred CCCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeeccccc-cccccCCCCcCcccHHHHHHHHHHHHcCCc-
Q 038230 380 PAWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKRF-LGEICNRPSADERDPATIASITAGVLGGAN- 452 (480)
Q Consensus 380 ~~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKsf-i~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~- 452 (480)
+ +|++=- |+-|+.+. ..++-+++ .+++|+++=.|..-- -|. .|....-+|...... +-.|+..|+|
T Consensus 153 ~--~vilcERG~tf~y~r~~~D~~~vp~~k---~~~lPVi~DpSHsvq~pg~-~~~~s~G~r~~v~~l-a~AAvA~GadG 225 (264)
T PRK05198 153 D--KIILCERGTSFGYNNLVVDMRGLPIMR---ETGAPVIFDATHSVQLPGG-QGGSSGGQREFVPVL-ARAAVAVGVAG 225 (264)
T ss_pred C--eEEEEeCCCCcCCCCeeechhhhHHHh---hCCCCEEEeCCccccCCCC-CCCCCCCcHHHHHHH-HHHHHHcCCCE
Confidence 6 777644 88774431 23344444 467999997764300 000 011112345554332 2345556665
Q ss_pred -EEEcCC
Q 038230 453 -IVRVHN 458 (480)
Q Consensus 453 -IlRvHd 458 (480)
++-||.
T Consensus 226 l~iEvHp 232 (264)
T PRK05198 226 LFIETHP 232 (264)
T ss_pred EEEEeCC
Confidence 888997
No 93
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.40 E-value=3.5 Score=41.78 Aligned_cols=195 Identities=16% Similarity=0.144 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHc----CCCEEEeCCCC----CCCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230 231 QSVEAAVSQVRLMISE----GADMIDIGAQS----TRPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV 301 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~----GAdiIDIG~eS----trP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v 301 (480)
-+.|.+++.|+.+.+. |+.+|==|+-- |.|.+- ....+|=++. ++.+++. .++||--|--+++-
T Consensus 27 Es~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~i----L~~vk~~---~glpvvTeV~~~~q 99 (290)
T PLN03033 27 ESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKI----LEKVKVA---YDLPIVTDVHESSQ 99 (290)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHH----HHHHHHH---HCCceEEeeCCHHH
Confidence 5778899999998886 99888777533 445432 3332444443 4566666 49999999999999
Q ss_pred HHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 302 ASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 302 ~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
++.+.++ +||+- |-+.+- .-+++.-+++.|.+|.+ .+|.--++ +.+...++++.+.|.+
T Consensus 100 ~~~vae~-~DilQ-IgAr~~rqtdLL~a~~~tgkpV~l--KkGq~~t~----------------~e~~~aaeki~~~GN~ 159 (290)
T PLN03033 100 CEAVGKV-ADIIQ-IPAFLCRQTDLLVAAAKTGKIINI--KKGQFCAP----------------SVMRNSAEKVRLAGNP 159 (290)
T ss_pred HHHHHhh-CcEEe-eCcHHHHHHHHHHHHHccCCeEEe--CCCCCCCH----------------HHHHHHHHHHHHcCCC
Confidence 9999998 58885 554431 14567777888876665 44433222 3344667788889986
Q ss_pred CCCEEEec-CCCCccCh----hHHHHHHHhcccCCCcEEEeeccccc-ccc----ccCCCCcCcccHHHHHHHHHHHHcC
Q 038230 381 AWRIIIDP-GLGFSKKA----EHNLDILLGLAASHAPILIGPSRKRF-LGE----ICNRPSADERDPATIASITAGVLGG 450 (480)
Q Consensus 381 ~~~IilDP-giGf~k~~----~~~~~~lr~l~~~g~Pil~G~SrKsf-i~~----v~g~~~~~~r~~~t~a~~~~a~~~G 450 (480)
+|++=- |+-|+.+. ..++.+++ ..++|+++=.|.--- -|. -.|....-+|...... +-.|+..|
T Consensus 160 --~viLcERG~tFgy~~lv~D~r~ip~mk---~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~l-arAAvA~G 233 (290)
T PLN03033 160 --NVMVCERGTMFGYNDLIVDPRNLEWMR---EANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCI-ARTAVAVG 233 (290)
T ss_pred --cEEEEeCCCCcCCCCcccchhhhHHHH---hcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHH-HHHHHHhC
Confidence 777655 88775431 23344444 479999997775200 000 0011112346554332 33455556
Q ss_pred Cc--EEEcCC
Q 038230 451 AN--IVRVHN 458 (480)
Q Consensus 451 a~--IlRvHd 458 (480)
+| ++-||.
T Consensus 234 aDGlfiEvHp 243 (290)
T PLN03033 234 VDGIFMEVHD 243 (290)
T ss_pred CCEEEEEecC
Confidence 65 888998
No 94
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.37 E-value=2.2 Score=42.75 Aligned_cols=124 Identities=17% Similarity=0.278 Sum_probs=86.2
Q ss_pred EEEEEecCC---CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 213 VMGILNLTP---DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 213 imGIlN~tp---DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
|.|.+-+-| +-+|+|+.-.-.|.|++.|+.+.+.|+|-|=|-=+-..|....+++ +-..-|..++.++++. .+
T Consensus 5 iIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~-etvaaM~~i~~~v~~~---~~ 80 (254)
T PF03437_consen 5 IIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGP-ETVAAMARIAREVRRE---VS 80 (254)
T ss_pred EEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCH-HHHHHHHHHHHHHHHh---CC
Confidence 557777766 5677875444467788888999999999998876667787666654 5677788888888887 37
Q ss_pred CeEEEeCCC---HHHHHHHHHcCCCEEe-cCCCCCC-------C---chHHHHHHhcCCCEEEEc
Q 038230 290 KLVSVDTFY---SKVASEAVGKGAHIVN-DVSAGQL-------D---PDMYKVVAGLKVPYVAMH 340 (480)
Q Consensus 290 ~pISIDT~~---~~v~~aaL~~G~~iIN-dVsg~~~-------d---~~m~~l~~~~~~~vVlmh 340 (480)
+|+.|+-.. .+.+.-|...|+++|- .+..+.. + .+++..=+..++.+-++.
T Consensus 81 ~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila 145 (254)
T PF03437_consen 81 VPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILA 145 (254)
T ss_pred CCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEe
Confidence 898887665 3456666777999886 2222110 1 346777777788844443
No 95
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.33 E-value=0.84 Score=54.83 Aligned_cols=208 Identities=17% Similarity=0.120 Sum_probs=124.3
Q ss_pred EEecC-CCCC-CCCCccCCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 216 ILNLT-PDSF-SDGGKFQSVEAAVSQVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 216 IlN~t-pDSF-sdgg~~~~~e~a~~~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
|...| .|-. |-.+..++.++.+..|..+-+. |.+.|++|+..|.--+-....+++|+|+..+-+.+. +.+
T Consensus 535 i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~------~~~ 608 (1146)
T PRK12999 535 LTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAP------NVL 608 (1146)
T ss_pred EEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCC------CCe
Confidence 45555 4522 2234557889999999999999 999999998777654445556788999865554442 333
Q ss_pred EEEeCC----------C----HHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCC--CEEEEcCCCCCCcccccc
Q 038230 292 VSVDTF----------Y----SKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKV--PYVAMHMRGDPSTMQNEE 352 (480)
Q Consensus 292 ISIDT~----------~----~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~--~vVlmh~~g~p~~~~~~~ 352 (480)
+..=.+ - .+-+++|.+.|++++-=..+.++- ....+.+++.|. -+.++.+ |+.-++.+ +
T Consensus 609 ~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~yt-g~~~d~~~-~ 686 (1146)
T PRK12999 609 FQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYT-GDILDPAR-A 686 (1146)
T ss_pred EEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEE-ecCCCCCC-C
Confidence 332111 1 233667788899988755555422 345777778873 2334443 21111111 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCC
Q 038230 353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRP 430 (480)
Q Consensus 353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~ 430 (480)
. | + .+++.+.++.+.++|.. .|.| |. .|..+ +.+..++++.++ ..+.|+=+ |.
T Consensus 687 ~--~-~-----~~~~~~~a~~l~~~Ga~--~i~ikDt-~G~l~-P~~~~~lv~~lk~~~~ipi~~-H~------------ 741 (1146)
T PRK12999 687 K--Y-D-----LDYYVDLAKELEKAGAH--ILAIKDM-AGLLK-PAAAYELVSALKEEVDLPIHL-HT------------ 741 (1146)
T ss_pred C--C-C-----HHHHHHHHHHHHHcCCC--EEEECCc-cCCCC-HHHHHHHHHHHHHHcCCeEEE-Ee------------
Confidence 0 1 1 26777888889999985 4443 54 33322 344566677663 45777633 11
Q ss_pred CcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 431 SADERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 431 ~~~~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
.+-.+...+.+..|++.||+++.+-=
T Consensus 742 --Hnt~Gla~an~laA~~aGad~vD~av 767 (1146)
T PRK12999 742 --HDTSGNGLATYLAAAEAGVDIVDVAV 767 (1146)
T ss_pred --CCCCchHHHHHHHHHHhCCCEEEecc
Confidence 12223444556678899999988754
No 96
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.27 E-value=1.9 Score=40.79 Aligned_cols=98 Identities=21% Similarity=0.357 Sum_probs=73.3
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
..++.|+... +.+++++.++.+++.|++.|-+-.. .+. -.+.++.+++.. .++
T Consensus 4 ~~~~~i~r~~-----------~~~~~~~~~~~l~~~G~~~vev~~~--~~~------------~~~~i~~l~~~~--~~~ 56 (190)
T cd00452 4 QPLVAVLRGD-----------DAEDALALAEALIEGGIRAIEITLR--TPG------------ALEAIRALRKEF--PEA 56 (190)
T ss_pred CcEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCC--Chh------------HHHHHHHHHHHC--CCC
Confidence 4566666555 4789999999999999999999742 121 112456666553 257
Q ss_pred eEEEeCCC-HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 291 LVSVDTFY-SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 291 pISIDT~~-~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
.|...|-- .+-++.|++.|++.|. ++.. ++++...+++++.+++.
T Consensus 57 ~iGag~v~~~~~~~~a~~~Ga~~i~--~p~~-~~~~~~~~~~~~~~~i~ 102 (190)
T cd00452 57 LIGAGTVLTPEQADAAIAAGAQFIV--SPGL-DPEVVKAANRAGIPLLP 102 (190)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEE--cCCC-CHHHHHHHHHcCCcEEC
Confidence 78887777 9999999999999995 4443 78999999999988774
No 97
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=95.26 E-value=1.2 Score=45.01 Aligned_cols=153 Identities=11% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGAH 311 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~~ 311 (480)
+...+.+++++++||++|=+.=.+.......+++++-.+.+.|.++.+.+.....+.++.+ .-......+.-.+.|++
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~~~~~~~l~~~~~d 223 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDAADLLEEMIQLGVD 223 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCHHHHHHHHHHhCcc
Confidence 5567788899999999997762211111123566655555667777665421112455554 43335567777778999
Q ss_pred EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC
Q 038230 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG 391 (480)
Q Consensus 312 iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG 391 (480)
+++=-.. . .++.++.++++-..++|-. .+...... . -+++.+..++.++.+ | + +.|+.||-|
T Consensus 224 ~~~~d~~-~--~d~~~~~~~~~~~~~i~Gg--v~~~~~~~---~----~e~i~~~v~~~l~~~---~-~--~~il~~~cg 285 (306)
T cd00465 224 VISFDMT-V--NEPKEAIEKVGEKKTLVGG--VDPGYLPA---T----DEECIAKVEELVERL---G-P--HYIINPDCG 285 (306)
T ss_pred eEecccc-c--CCHHHHHHHhCCCEEEECC--CCccccCC---C----HHHHHHHHHHHHHHh---C-C--CeEEeCCCC
Confidence 9872211 1 2567777888877777653 22211111 0 134444444444443 2 2 689999988
Q ss_pred Cc-cChh--HHHHHHH
Q 038230 392 FS-KKAE--HNLDILL 404 (480)
Q Consensus 392 f~-k~~~--~~~~~lr 404 (480)
.. .+.. +|++.+-
T Consensus 286 i~~~~~~~~enl~a~v 301 (306)
T cd00465 286 LGPDSDYKPEHLRAVV 301 (306)
T ss_pred CCCCCCCcHHHHHHHH
Confidence 74 3445 7776654
No 98
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=94.93 E-value=2 Score=46.97 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=87.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230 224 FSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS 303 (480)
Q Consensus 224 Fsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~ 303 (480)
.--.|..++.++-++.|+.+.+.|.++|.+|..+.. +.|.+.+..+.+.+.. ....++=..+.+-++
T Consensus 13 ~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s--------~~d~e~v~~i~~~~~~-----~~i~al~r~~~~did 79 (494)
T TIGR00973 13 EQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSS--------PGDFEAVQRIARTVKN-----PRVCGLARCVEKDID 79 (494)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHHHHhCCC-----CEEEEEcCCCHHhHH
Confidence 333456689999999999999999999999964322 2445554333322221 123344444778888
Q ss_pred HHHHc----CCCEEe---cCCCCC------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHH
Q 038230 304 EAVGK----GAHIVN---DVSAGQ------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQ 362 (480)
Q Consensus 304 aaL~~----G~~iIN---dVsg~~------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~e 362 (480)
.|+++ +++.|+ .+|-.. .. .++++.+++++..+......+.. .+
T Consensus 80 ~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r------~d--------- 144 (494)
T TIGR00973 80 AAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGR------TE--------- 144 (494)
T ss_pred HHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC------CC---------
Confidence 88876 444443 332110 00 24667788888776665443221 11
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230 363 VASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 363 v~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l 406 (480)
.+++.+.++.+.++|.. .|.| |- +|... +.+..++++.+
T Consensus 145 -~~~l~~~~~~~~~~Ga~--~i~l~DT-vG~~~-P~~~~~~i~~l 184 (494)
T TIGR00973 145 -IPFLARIVEAAINAGAT--TINIPDT-VGYAL-PAEYGNLIKGL 184 (494)
T ss_pred -HHHHHHHHHHHHHcCCC--EEEeCCC-CCCCC-HHHHHHHHHHH
Confidence 16777888889999985 4444 33 33322 34445555555
No 99
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.89 E-value=1.6 Score=48.86 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC----eEEEeCCCHHHHHHH-
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK----LVSVDTFYSKVASEA- 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~----pISIDT~~~~v~~aa- 305 (480)
+..++.+..|..+-+.|...|++++..|.-.+-..-.|..|+||..+-+.+.+...+.=+ .+..-++.-+|++.-
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v 102 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFV 102 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHH
Confidence 678899999999999999999999988876555555567788876555444321000000 245667776666654
Q ss_pred ---HHcCCCEEecCCCCCCCc---hHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 306 ---VGKGAHIVNDVSAGQLDP---DMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 306 ---L~~G~~iINdVsg~~~d~---~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
.+.|.+++-=..+.++-+ .-++.+++.|.-+.. +.+ +.|.- . .+++.+.++.+.++
T Consensus 103 ~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt-~sp~~--t-------------~e~~~~~ak~l~~~ 166 (596)
T PRK14042 103 KLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT-TSPVH--T-------------LDNFLELGKKLAEM 166 (596)
T ss_pred HHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec-CCCCC--C-------------HHHHHHHHHHHHHc
Confidence 556999887666666323 357778888864442 233 23421 0 25667788888899
Q ss_pred CCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230 378 GIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR 455 (480)
Q Consensus 378 Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR 455 (480)
|+. .|.| |. .|..+ +.+-.++++.++ ..+.|+=+ |+ .+..+...+.+..|++.||+++.
T Consensus 167 Gad--~I~IkDt-aG~l~-P~~v~~lv~alk~~~~ipi~~-H~--------------Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 167 GCD--SIAIKDM-AGLLT-PTVTVELYAGLKQATGLPVHL-HS--------------HSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred CCC--EEEeCCc-ccCCC-HHHHHHHHHHHHhhcCCEEEE-Ee--------------CCCCCcHHHHHHHHHHhCCCEEE
Confidence 986 4544 54 33322 344566677663 45666532 11 12223344445668889999887
Q ss_pred cCC
Q 038230 456 VHN 458 (480)
Q Consensus 456 vHd 458 (480)
+-=
T Consensus 228 ~ai 230 (596)
T PRK14042 228 TAI 230 (596)
T ss_pred ecc
Confidence 643
No 100
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.82 E-value=0.37 Score=46.67 Aligned_cols=98 Identities=18% Similarity=0.413 Sum_probs=75.5
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
..++.|+... +.+++++.++.+++.|-+.|.|-..+ |++ ..+|+.+++.. .++
T Consensus 8 ~~liaVlr~~-----------~~e~a~~~~~al~~~Gi~~iEit~~t--~~a------------~~~i~~l~~~~--~~~ 60 (204)
T TIGR01182 8 AKIVPVIRID-----------DVDDALPLAKALIEGGLRVLEVTLRT--PVA------------LDAIRLLRKEV--PDA 60 (204)
T ss_pred CCEEEEEecC-----------CHHHHHHHHHHHHHcCCCEEEEeCCC--ccH------------HHHHHHHHHHC--CCC
Confidence 4577777654 57999999999999999999998633 432 12345555543 357
Q ss_pred eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
.|..=| .+++.++.|+++|++.| ||-.. ++++++.+++++.+++-
T Consensus 61 ~vGAGTVl~~~~a~~a~~aGA~Fi--vsP~~-~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 61 LIGAGTVLNPEQLRQAVDAGAQFI--VSPGL-TPELAKHAQDHGIPIIP 106 (204)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEE--ECCCC-CHHHHHHHHHcCCcEEC
Confidence 777765 78999999999999999 55543 89999999999999884
No 101
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.19 Score=48.67 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHc
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGK 308 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~ 308 (480)
..++|+++..++.+++.|.+.|.|=..|..+ . .+|+++++.. .++.|.-=| .+++.+++|.++
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a-------~-------e~I~~l~~~~--p~~lIGAGTVL~~~q~~~a~~a 84 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAA-------L-------EAIRALAKEF--PEALIGAGTVLNPEQARQAIAA 84 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCH-------H-------HHHHHHHHhC--cccEEccccccCHHHHHHHHHc
Confidence 3678999999999999999999997755332 1 2345555543 244454444 689999999999
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEE
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYV 337 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vV 337 (480)
|+++| ||-.. ++++++.+.+|+.+++
T Consensus 85 Ga~fi--VsP~~-~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 85 GAQFI--VSPGL-NPEVAKAANRYGIPYI 110 (211)
T ss_pred CCCEE--ECCCC-CHHHHHHHHhCCCccc
Confidence 99999 55543 7999999999999987
No 102
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.61 E-value=2.5 Score=42.08 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=100.8
Q ss_pred ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038230 200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE 279 (480)
Q Consensus 200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~ 279 (480)
+++..++. .+|+|...+. . .+.+++++.+++..+.|||+|.+=...- ...+ +.+.+...+.
T Consensus 6 ~~~~~~~~-~~~~i~v~l~--~---------~~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~---~~~~~~~~~~ 66 (253)
T PRK02412 6 VKNLVIGE-GAPKIIVPIM--G---------KTLEEVLAEALAISKYDADIIEWRADFL----EKIS---DVESVLAAAP 66 (253)
T ss_pred EeceEeCC-CCcEEEEEeC--C---------CCHHHHHHHHHHHhhcCCCEEEEEechh----hccC---CHHHHHHHHH
Confidence 34444543 4677766553 2 3678999999999999999999865321 1111 2344555566
Q ss_pred HHHcCCcCCCCeEEE--e------------CCCHHHHHHHHHcC-CCEEecCCCCCCC---chHHHHHHhcCCCEEEEc-
Q 038230 280 AVLTMPEMEGKLVSV--D------------TFYSKVASEAVGKG-AHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMH- 340 (480)
Q Consensus 280 ~l~~~~~~~~~pISI--D------------T~~~~v~~aaL~~G-~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh- 340 (480)
.+++.. .++|+-+ = ..+.+.++.+++.| +++| ||.-...+ .++...+++.++.+|+.+
T Consensus 67 ~l~~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~v-DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 67 AIREKF--AGKPLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYI-DVELFSGKDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred HHHHhc--CCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEE-EEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence 666542 2345433 2 22345778888888 7877 46532212 234555667899999864
Q ss_pred C-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---c--cCCCcEE
Q 038230 341 M-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---A--ASHAPIL 414 (480)
Q Consensus 341 ~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~--~~g~Pil 414 (480)
+ .++|.. +.+.+.++.+.+.|-+-=+|.. .+++..+++.+++-. + ..+.|++
T Consensus 144 ~f~~tP~~-----------------~~l~~~~~~~~~~gaDivKia~-----~a~~~~D~~~ll~~~~~~~~~~~~~P~i 201 (253)
T PRK02412 144 DFEKTPPK-----------------EEIVERLRKMESLGADIVKIAV-----MPQSEQDVLTLLNATREMKELYADQPLI 201 (253)
T ss_pred CCCCCcCH-----------------HHHHHHHHHHHHhCCCEEEEEe-----cCCCHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 3 344421 2345677788888854224444 346777777776543 2 2577864
No 103
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=94.61 E-value=4.2 Score=44.91 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=88.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCH-
Q 038230 223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYS- 299 (480)
Q Consensus 223 SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~- 299 (480)
-.---|..++.++-++.|+.+.+.|.|+|.+|..+..| .|.+.+..+.+. .. .+..|+. .+.++
T Consensus 12 G~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~--------~d~~~v~~i~~~---~~--~~~~i~~~~r~~r~~ 78 (526)
T TIGR00977 12 GAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP--------KDVQFFWQLKEM---NF--KNAKIVAFCSTRRPH 78 (526)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh--------HHHHHHHHHHHh---CC--CCcEEEEEeeecCCC
Confidence 33334567899999999999999999999999644333 334443333321 11 1223332 34444
Q ss_pred ------HHHHHHHHcCCCEEec---CCC------CCCC--------chHHHHHHhcCCCEEE--EcC-CCCCCccccccc
Q 038230 300 ------KVASEAVGKGAHIVND---VSA------GQLD--------PDMYKVVAGLKVPYVA--MHM-RGDPSTMQNEEN 353 (480)
Q Consensus 300 ------~v~~aaL~~G~~iINd---Vsg------~~~d--------~~m~~l~~~~~~~vVl--mh~-~g~p~~~~~~~~ 353 (480)
..+++++++|++.|.= .|. .... .++++.+++++..|.. +|. ++.- .+
T Consensus 79 ~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r------~~ 152 (526)
T TIGR00977 79 KKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYK------AN 152 (526)
T ss_pred CCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeeccc------CC
Confidence 4578888888886553 321 1111 1346778888877653 443 2211 11
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 354 LQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 354 ~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
.+++.+.++.+.++|.++ =.|.|. +|. .++.+..++++.+
T Consensus 153 ----------~~~l~~~~~~a~~aGad~-i~i~DT-vG~-~~P~~v~~li~~l 192 (526)
T TIGR00977 153 ----------PEYALATLATAQQAGADW-LVLCDT-NGG-TLPHEISEITTKV 192 (526)
T ss_pred ----------HHHHHHHHHHHHhCCCCe-EEEecC-CCC-cCHHHHHHHHHHH
Confidence 167788888899999873 234475 232 2334445566665
No 104
>PLN02389 biotin synthase
Probab=94.61 E-value=2.7 Score=44.44 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=63.5
Q ss_pred CcEEEEEEecCC-----C----CCCC---C----CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230 210 KTSVMGILNLTP-----D----SFSD---G----GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER 273 (480)
Q Consensus 210 ~~~imGIlN~tp-----D----SFsd---g----g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r 273 (480)
++.+-+|+|+.- | +||. . ...+++|++++.|++..+.|+.-+-++. |.+. ...++.++++
T Consensus 79 ~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivt-s~rg---~~~e~~~~e~ 154 (379)
T PLN02389 79 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGA-AWRD---TVGRKTNFNQ 154 (379)
T ss_pred EEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEe-cccC---CCCChhHHHH
Confidence 577888888831 2 2332 1 2247999999999999999999998863 2221 1223346888
Q ss_pred HHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHHHcCCCEEe
Q 038230 274 LIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL~~G~~iIN 314 (480)
+..+++.+++. ++.+ |.-....+++++--++|++.+|
T Consensus 155 i~eiir~ik~~----~l~i~~s~G~l~~E~l~~LkeAGld~~~ 193 (379)
T PLN02389 155 ILEYVKEIRGM----GMEVCCTLGMLEKEQAAQLKEAGLTAYN 193 (379)
T ss_pred HHHHHHHHhcC----CcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 88889888853 4433 3334556666666666776655
No 105
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=94.56 E-value=1.6 Score=45.95 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=96.7
Q ss_pred CCcEEEEEEecC----CC----CCCC----CCccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230 209 LKTSVMGILNLT----PD----SFSD----GGKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 209 ~~~~imGIlN~t----pD----SFsd----gg~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~ 275 (480)
.+..+..++|+| -| +||. ....++.+++++.|+.+.+.|+.-|-+ ||++ |.. .+++.+.
T Consensus 70 ~~v~l~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~------~~~e~l~ 141 (371)
T PRK09240 70 NTISLYTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEH--EAK------VGVDYIR 141 (371)
T ss_pred CEEEEEeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCC------CCHHHHH
Confidence 345566778876 22 3332 124579999999999999999998865 4442 221 2366777
Q ss_pred HHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230 276 PVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ 355 (480)
Q Consensus 276 ~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~ 355 (480)
.+++.|++.. ..+-+++-....+.+++--++|++-+| ++-.+.+++.++-+ |..|... .
T Consensus 142 ~~i~~Ik~~~--p~i~i~~g~lt~e~l~~Lk~aGv~r~~-i~lET~~~~~~~~i----------~~~g~~h--------~ 200 (371)
T PRK09240 142 RALPIAREYF--SSVSIEVQPLSEEEYAELVELGLDGVT-VYQETYNPATYAKH----------HLRGPKR--------D 200 (371)
T ss_pred HHHHHHHHhC--CCceeccCCCCHHHHHHHHHcCCCEEE-EEEecCCHHHHHHh----------CcCCCCC--------C
Confidence 7788877542 234444444556666555556777665 44444445554433 2211111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
|+ .-.+.++.|.++|++ +|=.+-.+|.+.+.++-++++.++
T Consensus 201 ~~--------~rl~~i~~a~~aG~~--~v~~g~i~Glge~~~d~~~~a~~l 241 (371)
T PRK09240 201 FE--------YRLETPERAGRAGIR--KIGLGALLGLSDWRTDALMTALHL 241 (371)
T ss_pred HH--------HHHHHHHHHHHcCCC--eeceEEEecCCccHHHHHHHHHHH
Confidence 22 223667888999996 677888788888777766665544
No 106
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.43 E-value=0.52 Score=45.54 Aligned_cols=98 Identities=23% Similarity=0.362 Sum_probs=74.8
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
-.++.|+... +.+++++.++.+++.|-..|.|-.. .|++ ..+|+.+++.. .++
T Consensus 4 ~~vv~Vir~~-----------~~~~a~~ia~al~~gGi~~iEit~~--tp~a------------~~~I~~l~~~~--~~~ 56 (201)
T PRK06015 4 QPVIPVLLID-----------DVEHAVPLARALAAGGLPAIEITLR--TPAA------------LDAIRAVAAEV--EEA 56 (201)
T ss_pred CCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCC--CccH------------HHHHHHHHHHC--CCC
Confidence 3466666544 5799999999999999999999863 3432 12445555543 367
Q ss_pred eEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 291 LVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 291 pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
.|..=| .+++.++.|+++|+++|-|- . .++++++.+++++.+++-
T Consensus 57 ~vGAGTVl~~e~a~~ai~aGA~FivSP--~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 57 IVGAGTILNAKQFEDAAKAGSRFIVSP--G-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred EEeeEeCcCHHHHHHHHHcCCCEEECC--C-CCHHHHHHHHHcCCCEeC
Confidence 777766 78999999999999999544 3 379999999999999983
No 107
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=94.38 E-value=1.4 Score=46.20 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=100.4
Q ss_pred CCcEEEEEEecC----CC----CCCCC----CccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230 209 LKTSVMGILNLT----PD----SFSDG----GKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 209 ~~~~imGIlN~t----pD----SFsdg----g~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~ 275 (480)
.+..+.+++|.| -| +||.. ...++.|++++.|+.+.+.|+.-|=+ ||+. |.. .+++++.
T Consensus 69 ~~v~l~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~--p~~------~~~e~l~ 140 (366)
T TIGR02351 69 NTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGES--EKA------AGVEYIA 140 (366)
T ss_pred CEEEEEeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCC--CCC------CCHHHHH
Confidence 345566777777 23 33321 13468999999999999999986654 4432 221 2366777
Q ss_pred HHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccc
Q 038230 276 PVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQ 355 (480)
Q Consensus 276 ~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~ 355 (480)
.+++.+++.. ..+.+.+.....+.+++-.++|++-+| ++-.+.+++.++-+ |..|...+
T Consensus 141 eii~~Ik~~~--p~i~Iei~~lt~e~~~~Lk~aGv~r~~-i~lET~~~~~y~~i----------~~~g~~h~-------- 199 (366)
T TIGR02351 141 EAIKLAREYF--SSLAIEVQPLNEEEYKKLVEAGLDGVT-VYQETYNEKKYKKH----------HLAGKKKD-------- 199 (366)
T ss_pred HHHHHHHHhC--CccccccccCCHHHHHHHHHcCCCEEE-EEeecCCHHHHHhc----------CcCCCCCC--------
Confidence 7788887653 235566667888888777778988776 55555556655443 22121111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 356 YDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 356 ~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
| +.-.+.++.|.++|++ +|=++-.+|.+.+..+.+++..++
T Consensus 200 ~--------~~rl~~i~~a~~aG~~--~v~~g~i~Gl~e~~~d~~~~a~~l 240 (366)
T TIGR02351 200 F--------RYRLNTPERAAKAGMR--KIGIGALLGLDDWRTDAFFTAYHL 240 (366)
T ss_pred H--------HHHHHHHHHHHHcCCC--eeceeEEEeCchhHHHHHHHHHHH
Confidence 1 2223678889999996 566677777777777767665443
No 108
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.21 E-value=2.3 Score=41.08 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=83.1
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE----Ee-------
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS----VD------- 295 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS----ID------- 295 (480)
|+...+.+.+.+.|+.+.+.||..+.++. .+++ +.+++. +++|+. -|
T Consensus 16 ~~~~~~~~~~~~~a~a~~~~G~~~~~~~~------------~~~i-------~~i~~~---~~~Pil~~~~~d~~~~~~~ 73 (221)
T PRK01130 16 GEPLHSPEIMAAMALAAVQGGAVGIRANG------------VEDI-------KAIRAV---VDVPIIGIIKRDYPDSEVY 73 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEcCC------------HHHH-------HHHHHh---CCCCEEEEEecCCCCCCce
Confidence 44466788999999999999999999852 1233 333433 245542 12
Q ss_pred -CCCHHHHHHHHHcCCCEEecCCCC------CCCchHHHHHHh-cCCCEEEEcCCCCCCccccccccchhhHHHHHHHHH
Q 038230 296 -TFYSKVASEAVGKGAHIVNDVSAG------QLDPDMYKVVAG-LKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL 367 (480)
Q Consensus 296 -T~~~~v~~aaL~~G~~iINdVsg~------~~d~~m~~l~~~-~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l 367 (480)
+...+-+++|.++|+++|.-.... ....++++.+++ .+.+++.--. +
T Consensus 74 ~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-----t-------------------- 128 (221)
T PRK01130 74 ITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS-----T-------------------- 128 (221)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC-----C--------------------
Confidence 123566899999999977633221 112578889999 6777664111 0
Q ss_pred HHHHHHHHHCCCCCCCEEEecC-CCCc----cChhHHHHHHHhc-ccCCCcEEEe
Q 038230 368 YSKVRDAELSGIPAWRIIIDPG-LGFS----KKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~IilDPg-iGf~----k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.+.+..+.+.|.. + +-.+ .|+. ......++.++++ +..+.|++.+
T Consensus 129 ~ee~~~a~~~G~d---~-i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~ 179 (221)
T PRK01130 129 LEEGLAAQKLGFD---F-IGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAE 179 (221)
T ss_pred HHHHHHHHHcCCC---E-EEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEE
Confidence 0223467788985 3 3332 1221 1223346677777 3458998864
No 109
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.18 E-value=0.66 Score=45.53 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=76.2
Q ss_pred CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
+..|+.|+... +.+++++.++.+++.|-..|.|-..+ |++ .+.++++. +...+.. .+
T Consensus 14 ~~~vi~Vvr~~-----------~~~~a~~~~~al~~gGi~~iEiT~~t--p~a-----~~~i~~l~---~~~~~~~--p~ 70 (222)
T PRK07114 14 ATGMVPVFYHA-----------DVEVAKKVIKACYDGGARVFEFTNRG--DFA-----HEVFAELV---KYAAKEL--PG 70 (222)
T ss_pred hCCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--CcH-----HHHHHHHH---HHHHhhC--CC
Confidence 35678877654 57999999999999999999997633 432 23344332 2333332 35
Q ss_pred CeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 290 KLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 290 ~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
+.|..=| .+++.+++|+++|+++|- |-. .++++++.+++++.+++-
T Consensus 71 ~~vGaGTVl~~e~a~~a~~aGA~FiV--sP~-~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 71 MILGVGSIVDAATAALYIQLGANFIV--TPL-FNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred eEEeeEeCcCHHHHHHHHHcCCCEEE--CCC-CCHHHHHHHHHcCCCEeC
Confidence 6777766 789999999999999995 443 379999999999999983
No 110
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.18 E-value=0.24 Score=50.15 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHHHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVASEAV 306 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~aaL 306 (480)
+.++..+.|+.+.+.|+|.|+|+..|.......-.-....+.+..+++.+++. .++||++--. + .+.++.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl~~~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKLTPNVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHHH
Confidence 57888899999999999999999765332110000012235666788888876 3778776321 1 23344555
Q ss_pred HcCCCEE
Q 038230 307 GKGAHIV 313 (480)
Q Consensus 307 ~~G~~iI 313 (480)
++|++.|
T Consensus 177 ~~G~d~i 183 (296)
T cd04740 177 EAGADGL 183 (296)
T ss_pred HcCCCEE
Confidence 5666544
No 111
>PLN02321 2-isopropylmalate synthase
Probab=94.18 E-value=3.3 Score=46.67 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=108.9
Q ss_pred EEEEecCC-CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC---C
Q 038230 214 MGILNLTP-DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME---G 289 (480)
Q Consensus 214 mGIlN~tp-DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~---~ 289 (480)
+=|+-.|+ |-.=-.|..++.++-++.|+.+.+.|.++|++|..+..|. |++.+..+.+.+.+..... .
T Consensus 87 V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~--------D~e~vr~i~~~~~~~v~~~~~v~ 158 (632)
T PLN02321 87 VRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD--------DLEAVKTIAKEVGNEVDEDGYVP 158 (632)
T ss_pred eEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc--------HHHHHHHHHHhcccCCCccccce
Confidence 34566664 4444456779999999999999999999999996433332 3444433333332210000 1
Q ss_pred CeEEEeCCCHHHHHHHHHc--C-----CCEEecCCCC------CCC--------chHHHHHHhcCCC-EEEEcCCCCCCc
Q 038230 290 KLVSVDTFYSKVASEAVGK--G-----AHIVNDVSAG------QLD--------PDMYKVVAGLKVP-YVAMHMRGDPST 347 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~--G-----~~iINdVsg~------~~d--------~~m~~l~~~~~~~-vVlmh~~g~p~~ 347 (480)
...+.=-.+.+-++.|+++ | +.+...+|-. ... .++++.++++|.. +......+.
T Consensus 159 ~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~--- 235 (632)
T PLN02321 159 VICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG--- 235 (632)
T ss_pred eeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC---
Confidence 1223444577888888887 3 2344444321 001 2467788888875 333222211
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc--cCCCc-EEEeecccccc
Q 038230 348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA--ASHAP-ILIGPSRKRFL 423 (480)
Q Consensus 348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~--~~g~P-il~G~SrKsfi 423 (480)
+.+ .+++.+.++.+.++|.. .|.| |- +|.. ++.+..++++.++ ..+.+ +.+|+-
T Consensus 236 ---rtd----------~d~l~~~~~~a~~aGa~--~I~L~DT-vG~~-~P~~v~~li~~l~~~~~~~~~v~i~vH----- 293 (632)
T PLN02321 236 ---RSD----------PEFLYRILGEVIKAGAT--TLNIPDT-VGYT-LPSEFGQLIADIKANTPGIENVIISTH----- 293 (632)
T ss_pred ---CCC----------HHHHHHHHHHHHHcCCC--EEEeccc-ccCC-CHHHHHHHHHHHHHhcCCCCCceEEEE-----
Confidence 111 16778888899999975 4433 43 2322 2344455666652 23332 333431
Q ss_pred ccccCCCCcCcccHHHHHHHHHHHHcCCcEEEc
Q 038230 424 GEICNRPSADERDPATIASITAGVLGGANIVRV 456 (480)
Q Consensus 424 ~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRv 456 (480)
. - .|+ +...|-+..|++.||+.+-+
T Consensus 294 --~--H---ND~-GlAvANslaAv~AGA~~Vd~ 318 (632)
T PLN02321 294 --C--Q---NDL-GLSTANTLAGAHAGARQVEV 318 (632)
T ss_pred --e--C---CCC-CHHHHHHHHHHHhCCCEEEE
Confidence 1 0 123 23333345577888877654
No 112
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.17 E-value=1.1 Score=47.99 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-----CCCHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-----TFYSKVASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-----T~~~~v~~aa 305 (480)
.+.+++++.++++++.|+++|.+|. |. ........++.+++.. ....|..| . -..-++.|
T Consensus 13 ~~~~~~~~~~~~~~~~Gv~~ie~g~----p~--------~~~~~~~~i~~l~~~~--~~~~ii~D~kl~d~-g~~~v~~a 77 (430)
T PRK07028 13 LELDRAVEIAKEAVAGGADWIEAGT----PL--------IKSEGMNAIRTLRKNF--PDHTIVADMKTMDT-GAIEVEMA 77 (430)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEeCC----HH--------HHHhhHHHHHHHHHHC--CCCEEEEEeeeccc-hHHHHHHH
Confidence 4689999999999999999999973 21 0112234456665542 12334444 2 23378889
Q ss_pred HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
.++|++.|--. +...+ .+.++.++++|..+++ +.+ |.+. .+++..+.+.|++
T Consensus 78 ~~aGAdgV~v~-g~~~~~~~~~~i~~a~~~G~~~~~g~~s---~~t~-------------------~e~~~~a~~~GaD- 133 (430)
T PRK07028 78 AKAGADIVCIL-GLADDSTIEDAVRAARKYGVRLMADLIN---VPDP-------------------VKRAVELEELGVD- 133 (430)
T ss_pred HHcCCCEEEEe-cCCChHHHHHHHHHHHHcCCEEEEEecC---CCCH-------------------HHHHHHHHhcCCC-
Confidence 99999987633 22211 3567788889988876 222 1110 1234566678886
Q ss_pred CCEEEecCCCCccChhHHHHHHHhcc-cCCCcEEE
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGLA-ASHAPILI 415 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l~-~~g~Pil~ 415 (480)
-|.+-||+.-.......++.+++++ ..++|+++
T Consensus 134 -~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a 167 (430)
T PRK07028 134 -YINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAV 167 (430)
T ss_pred -EEEEEeccchhhcCCChHHHHHHHHhhCCCcEEE
Confidence 6778886521111122355677663 45788865
No 113
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.06 E-value=0.24 Score=50.07 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=55.2
Q ss_pred EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|||++-..- ...|+.+.+.|||||| +|.||.. +...+..++.. .+.|
T Consensus 67 PVIGi~K~~~---------------~~Ea~~L~eaGvDiID---aT~r~rP-----------~~~~~~~iK~~---~~~l 114 (283)
T cd04727 67 PVMAKVRIGH---------------FVEAQILEALGVDMID---ESEVLTP-----------ADEEHHIDKHK---FKVP 114 (283)
T ss_pred CeEEeeehhH---------------HHHHHHHHHcCCCEEe---ccCCCCc-----------HHHHHHHHHHH---cCCc
Confidence 3888876431 7789999999999998 5555431 12334555654 2789
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEecC
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVNDV 316 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINdV 316 (480)
+.=|..+-+.+..|.+.|+|||-.-
T Consensus 115 ~MAD~stleEal~a~~~Gad~I~TT 139 (283)
T cd04727 115 FVCGARNLGEALRRISEGAAMIRTK 139 (283)
T ss_pred EEccCCCHHHHHHHHHCCCCEEEec
Confidence 9999999999999999999999643
No 114
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=93.95 E-value=11 Score=41.80 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=87.4
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---------eCCC
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---------DTFY 298 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---------DT~~ 298 (480)
|..++.++-++.|+.+.+.|.+.|++|..+..| .|.+.+ +.|.+.. ..+..++. +..+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~--------~d~~~~----~~i~~~~-l~~~~i~~~~~~~~~~i~~~~ 87 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGWPGSNP--------KDTEFF----KRAKELK-LKHAKLAAFGSTRRAGVSAEE 87 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh--------hHHHHH----HHHHHhC-CCCcEEEEEeeccccCCCccc
Confidence 456899999999999999999999999633222 233322 2222110 01233332 2233
Q ss_pred HHHHHHHHHcCCCEEecCCCC---------CCC--------chHHHHHHhcCCCEEEEcC---CCCCCccccccccchhh
Q 038230 299 SKVASEAVGKGAHIVNDVSAG---------QLD--------PDMYKVVAGLKVPYVAMHM---RGDPSTMQNEENLQYDD 358 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg~---------~~d--------~~m~~l~~~~~~~vVlmh~---~g~p~~~~~~~~~~~~~ 358 (480)
...++++++.|++.|.=.... +.+ .++++.++++|..+..... ++ +. .+
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da-~r-----~d----- 156 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG-YK-----AN----- 156 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc-cc-----CC-----
Confidence 457788888998877644221 100 2467788888887765332 21 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc-ccCCCcE
Q 038230 359 VCKQVASELYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL-AASHAPI 413 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l-~~~g~Pi 413 (480)
.+++.+.++.+.++|.+ +|.| |- +|.. ++.+..++++.+ +..+.|+
T Consensus 157 -----~~~l~~~~~~~~~~Gad--~i~l~DT-vG~~-~P~~v~~li~~l~~~~~v~i 204 (524)
T PRK12344 157 -----PEYALATLKAAAEAGAD--WVVLCDT-NGGT-LPHEVAEIVAEVRAAPGVPL 204 (524)
T ss_pred -----HHHHHHHHHHHHhCCCC--eEEEccC-CCCc-CHHHHHHHHHHHHHhcCCeE
Confidence 16677888888899987 4443 54 2322 234445556655 2335554
No 115
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.94 E-value=1.6 Score=42.55 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=95.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH----HHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK----VASEA 305 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~----v~~aa 305 (480)
+.+.++|++.|++..+. +|||.+|. |- =-.+=+ ..|+.|++.+ ++.+|--|+--.+ .++.|
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEvGT----pL----ik~eG~----~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma 76 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEVGT----PL----IKAEGM----RAVRALRELF--PDKIIVADLKTADAGAIEARMA 76 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEeCc----HH----HHHhhH----HHHHHHHHHC--CCCeEEeeeeecchhHHHHHHH
Confidence 36789999999998777 99999994 21 011112 4567777764 4777877754332 35677
Q ss_pred HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
.++|||++- |+|...+ ...++.+++||..+.+ .+-|.. .+.++...+++.|+.
T Consensus 77 ~~aGAd~~t-V~g~A~~~TI~~~i~~A~~~~~~v~i-Dl~~~~--------------------~~~~~~~~l~~~gvd-- 132 (217)
T COG0269 77 FEAGADWVT-VLGAADDATIKKAIKVAKEYGKEVQI-DLIGVW--------------------DPEQRAKWLKELGVD-- 132 (217)
T ss_pred HHcCCCEEE-EEecCCHHHHHHHHHHHHHcCCeEEE-EeecCC--------------------CHHHHHHHHHHhCCC--
Confidence 788999997 7665533 4578888899966554 322211 123455555668887
Q ss_pred CEEEecCCC---CccCh-hHHHHHHHhcccCCCcEEE
Q 038230 383 RIIIDPGLG---FSKKA-EHNLDILLGLAASHAPILI 415 (480)
Q Consensus 383 ~IilDPgiG---f~k~~-~~~~~~lr~l~~~g~Pil~ 415 (480)
.+++=-|.- .|++. ..+++.++++..+|.++-+
T Consensus 133 ~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV 169 (217)
T COG0269 133 QVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV 169 (217)
T ss_pred EEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEE
Confidence 777776654 46666 5778888887555666544
No 116
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=93.87 E-value=3.7 Score=42.24 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230 236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND 315 (480)
Q Consensus 236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd 315 (480)
.++.++.|+++|||+|=+.- +.. +...+|+++-.+...|.++.+.+..+.....+-++......++.-.+.|++.++
T Consensus 182 ~~~~~~~~~~aGad~I~i~d-~~a-~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~~~l~~~~~~g~d~~~- 258 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIAD-PSA-SPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLTSILEEMADCGFDGIS- 258 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCC-CCc-cccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCchHHHHHHHhcCCCeec-
Confidence 45678889999999998853 211 234678766665666666666554321123455566666677777778999876
Q ss_pred CCCCCCCchHHHHHHhcCCCEEEEcCCCCC-CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCc-
Q 038230 316 VSAGQLDPDMYKVVAGLKVPYVAMHMRGDP-STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFS- 393 (480)
Q Consensus 316 Vsg~~~d~~m~~l~~~~~~~vVlmh~~g~p-~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~- 393 (480)
+.. ...+.+..+.++-.+++|-.- .| ..+.. ...+++. +.+.++.+.|- -|+.||.|+.
T Consensus 259 ~d~---~~dl~~~~~~~g~~~~i~Gni-dp~~~l~~-------gt~eeI~----~~v~~~l~~g~----~Il~~gcgi~~ 319 (339)
T PRK06252 259 IDE---KVDVKTAKENVGDRAALIGNV-STSFTLLN-------GTPEKVK----AEAKKCLEDGV----DILAPGCGIAP 319 (339)
T ss_pred cCC---CCCHHHHHHHhCCCeEEEecc-CcHHHhcC-------CCHHHHH----HHHHHHHHcCC----CEEcCCCCCCC
Confidence 321 235666666776667776432 23 11111 1122333 33333333442 3999999984
Q ss_pred cChhHHHHHHHh
Q 038230 394 KKAEHNLDILLG 405 (480)
Q Consensus 394 k~~~~~~~~lr~ 405 (480)
.+..+|++.+-+
T Consensus 320 ~tp~enl~a~v~ 331 (339)
T PRK06252 320 KTPLENIKAMVE 331 (339)
T ss_pred CCCHHHHHHHHH
Confidence 566777766544
No 117
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.81 E-value=2.1 Score=43.12 Aligned_cols=160 Identities=13% Similarity=0.206 Sum_probs=83.9
Q ss_pred HHHHHHcCCCEEEeCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-HHH-HH---HHHH-c
Q 038230 240 VRLMISEGADMIDIGAQS-----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-SKV-AS---EAVG-K 308 (480)
Q Consensus 240 A~~~v~~GAdiIDIG~eS-----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-~~v-~~---aaL~-~ 308 (480)
|+-..++|.|.|=+|-.. ..|...+|+-++-+.....|.+....-+-..|+|++ ||. ++. ++ ..++ .
T Consensus 28 A~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~--sy~~~e~a~~na~rl~~ea 105 (263)
T TIGR00222 28 AKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM--SYATPEQALKNAARVMQET 105 (263)
T ss_pred HHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC--CCCCHHHHHHHHHHHHHHh
Confidence 445558999999888110 112233567554444443333322221112366776 663 333 22 2344 5
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
|++.|| +-++..-.+.++.+.+.|+||+. |..=+|++....-.+.-..-..+..+.+.++...++++|.. .++=|
T Consensus 106 Ga~aVk-iEgg~~~~~~i~~l~~~gIpV~g-HiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~---~ivlE 180 (263)
T TIGR00222 106 GANAVK-LEGGEWLVETVQMLTERGVPVVG-HLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQ---LLVLE 180 (263)
T ss_pred CCeEEE-EcCcHhHHHHHHHHHHCCCCEEE-ecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCC---EEEEc
Confidence 999999 65553234566777788999874 54334554322111100000112224455677778899995 66666
Q ss_pred CCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230 389 GLGFSKKAEHNLDILLGL-AASHAPIL 414 (480)
Q Consensus 389 giGf~k~~~~~~~~lr~l-~~~g~Pil 414 (480)
++- -++.+.+ +.+.+|+.
T Consensus 181 ~vp--------~~~a~~It~~l~iP~i 199 (263)
T TIGR00222 181 CVP--------VELAAKITEALAIPVI 199 (263)
T ss_pred CCc--------HHHHHHHHHhCCCCEE
Confidence 662 1344444 35678864
No 118
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.60 E-value=0.47 Score=45.34 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=56.1
Q ss_pred EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|.||+.-. +-|.+.|.++ -++.++++++.|||||=+=+ ..||.. +.+..+++.+++. ..+
T Consensus 34 PIIGi~K~~---y~~~~V~ITP--T~~ev~~l~~aGadIIAlDa-T~R~Rp---------~~l~~li~~i~~~----~~l 94 (192)
T PF04131_consen 34 PIIGIIKRD---YPDSDVYITP--TLKEVDALAEAGADIIALDA-TDRPRP---------ETLEELIREIKEK----YQL 94 (192)
T ss_dssp -EEEE-B-S---BTTSS--BS---SHHHHHHHHHCT-SEEEEE--SSSS-S---------S-HHHHHHHHHHC----TSE
T ss_pred CEEEEEecc---CCCCCeEECC--CHHHHHHHHHcCCCEEEEec-CCCCCC---------cCHHHHHHHHHHh----CcE
Confidence 478888743 2233567765 56789999999999999987 445532 2244456777876 489
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEecC
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVNDV 316 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINdV 316 (480)
+.=|-...+.+..|.++|+|+|-.-
T Consensus 95 ~MADist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 95 VMADISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred EeeecCCHHHHHHHHHcCCCEEEcc
Confidence 9999999999999999999999644
No 119
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=93.53 E-value=3.7 Score=41.83 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGAH 311 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~~ 311 (480)
+..++.++.++++||++|=+.-.... ...+|++.-.+.+.|.++.+.+..+..+.++.+ +......++.-.+.|++
T Consensus 168 ~~~~~~~~~~~~~G~d~i~i~d~~~~--~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d 245 (330)
T cd03465 168 EFIIRYADALIEAGADGIYISDPWAS--SSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGAD 245 (330)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCccc--cCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCC
Confidence 34567788899999999988742211 234577655555555555444322112455554 66555678788888999
Q ss_pred EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390 (480)
Q Consensus 312 iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi 390 (480)
++| +.. ...+.++.+.++-..++|-.- .|. .+. ....+++.+..++.++.+... +.+.|+-||-
T Consensus 246 ~~~-~d~---~~dl~~~~~~~g~~~~i~G~i-d~~~~l~-------~gt~eei~~~v~~~l~~~~~~---~~~~il~~gc 310 (330)
T cd03465 246 VFS-IDV---TVDLAEAKKKVGDKACLMGNL-DPIDVLL-------NGSPEEIKEEVKELLEKLLKG---GGGYILSSGC 310 (330)
T ss_pred eEe-ecc---cCCHHHHHHHhCCceEEEeCc-ChHHhhc-------CCCHHHHHHHHHHHHHHHhCC---CCCEEEeCCC
Confidence 988 322 136667777788777776532 222 111 111245555555666655322 2478999998
Q ss_pred CCc-cChhHHHHHHH
Q 038230 391 GFS-KKAEHNLDILL 404 (480)
Q Consensus 391 Gf~-k~~~~~~~~lr 404 (480)
|.. .+..+|++.+-
T Consensus 311 ~i~~~~p~enl~a~v 325 (330)
T cd03465 311 EIPPDTPIENIKAMI 325 (330)
T ss_pred CCCCCCCHHHHHHHH
Confidence 874 55667776553
No 120
>PRK06256 biotin synthase; Validated
Probab=93.46 E-value=2.1 Score=44.13 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=52.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
++.++|++++.++++.+.|+..+-+ ++. ..|. ..+++++..+++.+++... ..+-+++...+++.+++--+
T Consensus 89 ~~~s~eeI~~~~~~~~~~g~~~~~l~~~g-~~p~------~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~Lke 160 (336)
T PRK06256 89 AWLDIEELIEAAKEAIEEGAGTFCIVASG-RGPS------GKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKE 160 (336)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEEecC-CCCC------chHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHH
Confidence 3479999999999999999964433 221 1221 2356788888888886521 13345666677788877777
Q ss_pred cCCCEEe
Q 038230 308 KGAHIVN 314 (480)
Q Consensus 308 ~G~~iIN 314 (480)
+|++.++
T Consensus 161 aG~~~v~ 167 (336)
T PRK06256 161 AGVDRYN 167 (336)
T ss_pred hCCCEEe
Confidence 7877665
No 121
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.17 E-value=0.36 Score=46.50 Aligned_cols=88 Identities=25% Similarity=0.405 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGA 310 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~ 310 (480)
+.+++++.++.+.+.|-.+|.|-..+ |++ ..+|+.+++.. .++.|..=| .+++.++.|+++|+
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t--~~a------------~~~I~~l~~~~--p~~~vGAGTV~~~e~a~~a~~aGA 81 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRT--PNA------------LEAIEALRKEF--PDLLVGAGTVLTAEQAEAAIAAGA 81 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTS--TTH------------HHHHHHHHHHH--TTSEEEEES--SHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC--ccH------------HHHHHHHHHHC--CCCeeEEEeccCHHHHHHHHHcCC
Confidence 46889999999999999999998643 332 12345455442 477888866 78999999999999
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
++|-|-. .++++++.+++++.+++-
T Consensus 82 ~FivSP~---~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 82 QFIVSPG---FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEESS-----HHHHHHHHHHTSEEEE
T ss_pred CEEECCC---CCHHHHHHHHHcCCcccC
Confidence 9996553 379999999999999995
No 122
>PRK15108 biotin synthase; Provisional
Probab=93.11 E-value=3.2 Score=43.33 Aligned_cols=134 Identities=19% Similarity=0.325 Sum_probs=81.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL 306 (480)
.++++|++++.|+++.+.|++-|-+|+.-..|. ..+++.+..+++.+++. ++.+ |+=....+.+++--
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~------~~~~e~i~~~i~~ik~~----~i~v~~s~G~ls~e~l~~Lk 143 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH------ERDMPYLEQMVQGVKAM----GLETCMTLGTLSESQAQRLA 143 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC------cchHHHHHHHHHHHHhC----CCEEEEeCCcCCHHHHHHHH
Confidence 348999999999999999999997764222332 24577788888888854 4433 33345677777666
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
++|++.+| ++-.. .++.++ .++ . +. .|++ -.+.++.+.++|+. +-.
T Consensus 144 eAGld~~n-~~leT-~p~~f~-------~I~---~---~~--------~~~~--------rl~~i~~a~~~G~~---v~s 189 (345)
T PRK15108 144 NAGLDYYN-HNLDT-SPEFYG-------NII---T---TR--------TYQE--------RLDTLEKVRDAGIK---VCS 189 (345)
T ss_pred HcCCCEEe-ecccc-ChHhcC-------CCC---C---CC--------CHHH--------HHHHHHHHHHcCCc---eee
Confidence 77888877 54333 333322 111 0 11 1211 22556667777873 333
Q ss_pred ecCCCCccChhHHHHHHHhc
Q 038230 387 DPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 387 DPgiGf~k~~~~~~~~lr~l 406 (480)
=-.+|.+.+.++-++.+.++
T Consensus 190 g~i~GlgEt~ed~v~~~~~l 209 (345)
T PRK15108 190 GGIVGLGETVKDRAGLLLQL 209 (345)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 33356677776666665555
No 123
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.99 E-value=0.52 Score=47.71 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=54.5
Q ss_pred EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|||++-..- ...|+.+.+.|+|||| +|.++.. .++ .+..++..+ ++|
T Consensus 69 PVig~~kigh---------------~~Ea~~L~~~GvDiID---eTe~lrP----ade-------~~~~~K~~f---~vp 116 (287)
T TIGR00343 69 PVMAKVRIGH---------------FVEAQILEALGVDYID---ESEVLTP----ADW-------TFHIDKKKF---KVP 116 (287)
T ss_pred CEEEEeeccH---------------HHHHHHHHHcCCCEEE---ccCCCCc----HHH-------HHHHHHHHc---CCC
Confidence 3888876542 6788999999999999 5666531 122 234445542 799
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEec
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVND 315 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINd 315 (480)
+.=|..+-+.+..+.+.|++||-.
T Consensus 117 fmad~~~l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 117 FVCGARDLGEALRRINEGAAMIRT 140 (287)
T ss_pred EEccCCCHHHHHHHHHCCCCEEec
Confidence 999999999999999999999973
No 124
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.98 E-value=1.2 Score=43.17 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeC------------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDT------------ 296 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT------------ 296 (480)
.+.+++++.+++....|||+|.+-...-.. ...+.+...+..|++. .++|+- +-|
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l~~--------~~~~~~~~~l~~lr~~---~~~piI~T~R~~~eGG~~~~~~~ 75 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELRLDYLEN--------DSAEDISEQLAELRRS---LDLPIIFTVRTKEEGGRFQGSEE 75 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT--------TSHHHHHHHHHHHHHH---CTSEEEEE--BGGGTSSBSS-HH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeccccc--------cChHHHHHHHHHHHHh---CCCCEEEEecccccCCCCcCCHH
Confidence 578899999999988899999998754332 2244455556666654 245544 432
Q ss_pred CCHHHHHHHHHcCCCEEecCCCCCCCch--HHHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHH
Q 038230 297 FYSKVASEAVGKGAHIVNDVSAGQLDPD--MYKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVR 372 (480)
Q Consensus 297 ~~~~v~~aaL~~G~~iINdVsg~~~d~~--m~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~ 372 (480)
.+.+.++.+++.|+++| ||.....++. ....+.+.+..+|+. |+ .+.|.. +.+.+.++
T Consensus 76 ~~~~ll~~~~~~~~d~i-DiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~-----------------~~l~~~~~ 137 (224)
T PF01487_consen 76 EYLELLERAIRLGPDYI-DIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSW-----------------EELIELLE 137 (224)
T ss_dssp HHHHHHHHHHHHTSSEE-EEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---TH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEE-EEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCH-----------------HHHHHHHH
Confidence 23478889999998877 5765422222 255667788999986 42 334421 23667888
Q ss_pred HHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230 373 DAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL 414 (480)
Q Consensus 373 ~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil 414 (480)
.+.+.|-+-=+|.. .+++..+++.+++-. +.++.|+.
T Consensus 138 ~~~~~gadivKia~-----~~~~~~D~~~l~~~~~~~~~~~~~p~i 178 (224)
T PF01487_consen 138 EMQELGADIVKIAV-----MANSPEDVLRLLRFTKEFREEPDIPVI 178 (224)
T ss_dssp HHHHTT-SEEEEEE-----E-SSHHHHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHhcCCCeEEEEe-----ccCCHHHHHHHHHHHHHHhhccCCcEE
Confidence 88888865335544 346677777766654 23578864
No 125
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.94 E-value=4.2 Score=40.91 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTR--PMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
-+.|.+...|+...+.||+++=-|+--+| |-+ .... + +.+. .+++.++. .++|+--.-.+++-++.+++
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-e---~gL~-~l~~a~~~---~Gl~vvtEvm~~~~~e~~~~ 127 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-E---EGLK-LLKRAADE---TGLPVVTEVMDVRDVEAAAE 127 (286)
T ss_pred CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccC-H---HHHH-HHHHHHHH---cCCeeEEEecCHHHHHHHHh
Confidence 57889999999999999999999985433 422 1221 2 2232 23444444 59999999999999999999
Q ss_pred cCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 308 KGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 308 ~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
+ +|||- |-+.+. +=.+++-+-+.+-||++-- |...| + +++-...+...+.|-. +|||
T Consensus 128 y-~Dilq-vGARNMQNF~LLke~G~~~kPvLLKR--g~~aT------------i----eEwL~AAEYI~s~GN~--~vIL 185 (286)
T COG2876 128 Y-ADILQ-VGARNMQNFALLKEVGRQNKPVLLKR--GLSAT------------I----EEWLNAAEYILSHGNG--NVIL 185 (286)
T ss_pred h-hhHHH-hcccchhhhHHHHHhcccCCCeEEec--Ccccc------------H----HHHHHHHHHHHhCCCC--cEEE
Confidence 8 78775 544331 2345666666778998843 33222 1 2333456677788854 6666
Q ss_pred e-cCC-CCccChhH-----HHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccH-HHHHHHHHHHHcCCcEEEcCC
Q 038230 387 D-PGL-GFSKKAEH-----NLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDP-ATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 387 D-Pgi-Gf~k~~~~-----~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~-~t~a~~~~a~~~Ga~IlRvHd 458 (480)
= =|+ +|.+.... ..-++|+ ...+|+++-.| ..+|. |.. ..+|.+++|+..-.=++-||.
T Consensus 186 CERGIRtfe~~TRntLDi~aV~~~kq--~THLPVivDpS------H~~Gr-----r~lv~pla~AA~AaGAdglmiEVHp 252 (286)
T COG2876 186 CERGIRTFEKATRNTLDISAVPILKQ--ETHLPVIVDPS------HATGR-----RDLVEPLAKAAIAAGADGLMIEVHP 252 (286)
T ss_pred EecccccccccccceechHHHHHHHh--hcCCCEEECCC------Ccccc-----hhhHHHHHHHHHhccCCeeEEEecC
Confidence 4 366 46554322 2333454 46889999776 33332 333 344444444433344888998
No 126
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.92 E-value=0.48 Score=48.02 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 231 QSVEAAVSQVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
.++++..+.|+.+.+. |||.||+|..+..+..-.-.-....+.+..+++++++. .++||++-..
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~---~~~pv~vKi~ 165 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK---TDVPVFAKLS 165 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEECC
Confidence 3568888888888775 49999999765433210111112345667788888876 4789888765
No 127
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=92.90 E-value=4.4 Score=42.95 Aligned_cols=200 Identities=13% Similarity=0.183 Sum_probs=112.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH-Hc
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV-GK 308 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL-~~ 308 (480)
.++.|+.++..++|.++|.|++-|=+.-|+ ..++.+++. +-..-|=|+-=..+.+=. ..
T Consensus 136 ~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~----------------~~~~~~~~~----~R~~giVSRGGs~~~~WM~~~ 195 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAKDGVDFMTIHAGVLL----------------EYVERLKRS----GRITGIVSRGGAILAAWMLHH 195 (423)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEccchhH----------------HHHHHHHhC----CCccCeecCcHHHHHHHHHHc
Confidence 467799999999999999999999864322 234444442 112233333333332221 11
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID- 387 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD- 387 (480)
+.. |=.. +.-+++++++++|++.+=|=..- .|.....-.+ ..=+.|+ ..|-+++++|.++|+- +++.
T Consensus 196 ~~E--NPly--e~fD~lLeI~~~yDVtlSLGDgl-RPG~i~DA~D---~aQi~El-~~lgeL~~rA~e~gVQ---vMVEG 263 (423)
T TIGR00190 196 HKE--NPLY--KNFDYILEIAKEYDVTLSLGDGL-RPGCIADATD---RAQISEL-ITLGELVERAREADVQ---CMVEG 263 (423)
T ss_pred CCc--CchH--HHHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEEC
Confidence 211 1010 01268999999999877653220 1332221111 1113333 3578999999999994 6665
Q ss_pred cCCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE-----------
Q 038230 388 PGLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR----------- 455 (480)
Q Consensus 388 PgiGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR----------- 455 (480)
||.-.-...+.|+++.+++ .-+.|..+ |. -+|.-.+--|. ..++.-.++|...|||++=
T Consensus 264 PGHvPl~~I~~nv~lqK~l-c~~APfYvLGP-------LvTDiApGYDH-ItsAIGgAiAa~~GAdfLCYVTPaEHL~LP 334 (423)
T TIGR00190 264 PGHVPLDQIEANVRLQKEL-CDEAPFYVLGP-------LVTDIAPGYDH-ITSAIGAAIAGWAGADFLCYVTPKEHLALP 334 (423)
T ss_pred CCCCcHHHHHHHHHHHHHh-hCCCCeeecCC-------cccccCCCchH-HHHHHHHHHHHHcCCCeEEecCcHHHcCCC
Confidence 6665566678889888886 33667643 32 12222211223 2333347788899999873
Q ss_pred -cCChHHHHHHHHHHH
Q 038230 456 -VHNIRDNLDAVKLCD 470 (480)
Q Consensus 456 -vHdV~e~~~al~~~~ 470 (480)
+.||+|=..|.+++.
T Consensus 335 ~~eDVreGviA~kIAA 350 (423)
T TIGR00190 335 NVEDVKEGVIAYKIAA 350 (423)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 345666445555543
No 128
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=92.86 E-value=12 Score=37.94 Aligned_cols=191 Identities=14% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCccCCHHHHHHHHHHHHHcC-----CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230 227 GGKFQSVEAAVSQVRLMISEG-----ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV 301 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~G-----AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v 301 (480)
.+.+ +.++=++.++.+.+.| .+.|+++.- ++ .|.+.+..+++.-.+. .+ ....=..+.+-
T Consensus 15 ~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~--------~~--~d~~~v~~~~~~~~~~---~~-v~~~~r~~~~d 79 (279)
T cd07947 15 RPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLY--------TE--KDREAVEACLDRGYKF---PE-VTGWIRANKED 79 (279)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCc--------Ch--HHHHHHHHHHHcCCCC---CE-EEEEecCCHHH
Confidence 3556 8899999999999999 999999531 11 3344443333211001 12 23335567888
Q ss_pred HHHHHHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHH
Q 038230 302 ASEAVGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVA 364 (480)
Q Consensus 302 ~~aaL~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~ 364 (480)
++.|+++|++.|+=+-... .. .++++.++++|..+.+.-.+..+.+ ....+.
T Consensus 80 ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d-----------~~~~v~ 148 (279)
T cd07947 80 LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRAD-----------IYGFVL 148 (279)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCC-----------cccchH
Confidence 9999999988776332111 11 1366777888877766443222211 112345
Q ss_pred HHHHHHHHHHHHCCCCCCCE-EEec-CCCCc----cChhHHHHHHHhc-ccCCCc-EEEeeccccccccccCCCCcCccc
Q 038230 365 SELYSKVRDAELSGIPAWRI-IIDP-GLGFS----KKAEHNLDILLGL-AASHAP-ILIGPSRKRFLGEICNRPSADERD 436 (480)
Q Consensus 365 ~~l~~~i~~a~~~Gi~~~~I-ilDP-giGf~----k~~~~~~~~lr~l-~~~g~P-il~G~SrKsfi~~v~g~~~~~~r~ 436 (480)
+++.+.++.+.++|.+. .| +-|. |.+.. ..+.+-.++++.+ +..++| +-+|+ +. .+..
T Consensus 149 ~~~~~~~~~~~~~G~~~-~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~-------H~------Hn~~ 214 (279)
T cd07947 149 PFVNKLMKLSKESGIPV-KIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEW-------HG------HNDF 214 (279)
T ss_pred HHHHHHHHHHHHCCCCE-EEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEE-------Ee------cCCC
Confidence 77888888888999851 23 4576 44322 1124555666666 234444 22232 11 1222
Q ss_pred HHHHHHHHHHHHcCCcEEEcC
Q 038230 437 PATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 437 ~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+...+-+..|++.|++++.+.
T Consensus 215 Gla~AN~laA~~aG~~~vd~s 235 (279)
T cd07947 215 YKAVANAVAAWLYGASWVNCT 235 (279)
T ss_pred ChHHHHHHHHHHhCCCEEEEe
Confidence 334444566888999988764
No 129
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=92.82 E-value=2.2 Score=43.55 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----------
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----------- 297 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----------- 297 (480)
...+.|++++.+++..+.|++-|-+-+. ..|. .+.+++..+++.|++.. .+ +.+.++
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg-~~~~-------~~~~~~~~i~~~Ik~~~--~~--i~~~~~s~~e~~~~~~~ 101 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGG-LNPQ-------LDIEYYEELFRAIKQEF--PD--VHIHAFSPMEVYFLAKN 101 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecC-CCCC-------CCHHHHHHHHHHHHHHC--CC--ceEEecCHHHHHHHHHH
Confidence 3579999999999999999999888632 2332 22567778888888752 12 444333
Q ss_pred ----CHHHHHHHHHcCCCEEecCCCCCCCchH
Q 038230 298 ----YSKVASEAVGKGAHIVNDVSAGQLDPDM 325 (480)
Q Consensus 298 ----~~~v~~aaL~~G~~iINdVsg~~~d~~m 325 (480)
..++++.--++|.+.++.+..+..++++
T Consensus 102 ~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~ 133 (309)
T TIGR00423 102 EGLSIEEVLKRLKKAGLDSMPGTGAEILDDSV 133 (309)
T ss_pred cCCCHHHHHHHHHHcCCCcCCCCcchhcCHHH
Confidence 2455555555677776644333333333
No 130
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.77 E-value=1.4 Score=42.87 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=75.4
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EG 289 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~ 289 (480)
.+++.|+... +.++++..++.+++.|-.+|.|=..+ |++ ..+|+.+++.... .+
T Consensus 13 ~~vi~vir~~-----------~~~~a~~~~~al~~~Gi~~iEit~~~--~~a------------~~~i~~l~~~~~~~p~ 67 (213)
T PRK06552 13 NGVVAVVRGE-----------SKEEALKISLAVIKGGIKAIEVTYTN--PFA------------SEVIKELVELYKDDPE 67 (213)
T ss_pred CCEEEEEECC-----------CHHHHHHHHHHHHHCCCCEEEEECCC--ccH------------HHHHHHHHHHcCCCCC
Confidence 4577777655 58999999999999999999998632 432 1244555544211 14
Q ss_pred CeEEEeC-CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 290 KLVSVDT-FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 290 ~pISIDT-~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
+.|..=| .+++.++.|+++|+++|- |-. .++++++.+++++.+++-
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aGA~Fiv--sP~-~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAGAQFIV--SPS-FNRETAKICNLYQIPYLP 114 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcCCCEEE--CCC-CCHHHHHHHHHcCCCEEC
Confidence 6677766 789999999999999995 443 379999999999999984
No 131
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.77 E-value=0.56 Score=47.17 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT 296 (480)
+.++..+.|+.+.+.|||.|+|+..+-..... -+.....+.+..+++.+++. .++||++--
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl 169 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGG-RQLGQDPEAVANLLKAVKAA---VDIPLLVKL 169 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-cccccCHHHHHHHHHHHHHc---cCCCEEEEe
Confidence 56888899999999999999999754222110 01122345666778888876 367887753
No 132
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.57 E-value=3 Score=40.08 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=68.0
Q ss_pred cEEEEEEec-CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 211 TSVMGILNL-TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 211 ~~imGIlN~-tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
..|..-+|- +| | +|...+.++.++.|+.+.+.||+.|=+..+...-+. +. +. ++.+++. .+
T Consensus 11 ~~vIae~k~~sp---~-~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g---~~-~~-------~~~i~~~---v~ 72 (217)
T cd00331 11 LGVIAEVKRASP---S-KGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQG---SL-ED-------LRAVREA---VS 72 (217)
T ss_pred ceEEEEecCCCC---C-CCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCC---CH-HH-------HHHHHHh---cC
Confidence 455555554 34 2 344556678899999999999999988643222111 11 22 3333443 36
Q ss_pred CeEEEeC--CCHHHHHHHHHcCCCEEecCCC-CCC--CchHHHHHHhcCCCEEE
Q 038230 290 KLVSVDT--FYSKVASEAVGKGAHIVNDVSA-GQL--DPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 290 ~pISIDT--~~~~v~~aaL~~G~~iINdVsg-~~~--d~~m~~l~~~~~~~vVl 338 (480)
+||.+-. .+++-++++++.|++.+.=... ... ..++++.++.+|..+++
T Consensus 73 iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v 126 (217)
T cd00331 73 LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLV 126 (217)
T ss_pred CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEE
Confidence 7888776 6677899999999998852221 111 14566667778877654
No 133
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.48 E-value=3.6 Score=41.22 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=86.3
Q ss_pred HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCC-----C-HHH----HH
Q 038230 240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTF-----Y-SKV----AS 303 (480)
Q Consensus 240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~-----~-~~v----~~ 303 (480)
|+-..++|.|.|=+|-. -..|....++-+| +...++.+.+. .+.| |+.|.. + ++. +.
T Consensus 25 A~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~e----m~~~~~~V~r~---~~~p~viaD~~fg~y~~~~~~av~~a~ 97 (254)
T cd06557 25 AKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDE----MIYHTRAVRRG---APRALVVADMPFGSYQTSPEQALRNAA 97 (254)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHH----HHHHHHHHHhc---CCCCeEEEeCCCCcccCCHHHHHHHHH
Confidence 34445679999988721 1245556677544 44445666655 3667 889984 2 332 34
Q ss_pred HHHH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 304 EAVG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 304 aaL~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
..++ +|++.|| +.+.....+.++.+.+.+.||+. |..=+|++......+.-..-..+..+.+.++...++++|..
T Consensus 98 r~~~~aGa~aVk-iEd~~~~~~~I~al~~agipV~g-HiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~-- 173 (254)
T cd06557 98 RLMKEAGADAVK-LEGGAEVAETIRALVDAGIPVMG-HIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAF-- 173 (254)
T ss_pred HHHHHhCCeEEE-EcCcHHHHHHHHHHHHcCCCeec-cccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCC--
Confidence 4555 7999999 54432123455666678888773 44324554332211100000112234555677777899995
Q ss_pred CEEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230 383 RIIIDPGLGFSKKAEHNLDILLGL-AASHAPIL 414 (480)
Q Consensus 383 ~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil 414 (480)
.++=|++ . . ++++++ +....|++
T Consensus 174 -~i~lE~v---~-~----~~~~~i~~~v~iP~i 197 (254)
T cd06557 174 -ALVLECV---P-A----ELAKEITEALSIPTI 197 (254)
T ss_pred -EEEEcCC---C-H----HHHHHHHHhCCCCEE
Confidence 6766776 1 1 244554 34677876
No 134
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.45 E-value=3.5 Score=40.90 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCC--HHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFY--SKVASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~--~~v~~aa 305 (480)
.++..+.+.++++.+.||.-|=|-=+. ..++...+|.++-.+|+.-++++..+. ++.| -.|++- .+-+++|
T Consensus 82 ~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~----~~~I~ARTDa~~~~~~~~dea 157 (238)
T PF13714_consen 82 NDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDP----DFVIIARTDAFLRAEEGLDEA 157 (238)
T ss_dssp SSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSST----TSEEEEEECHHCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCC----eEEEEEeccccccCCCCHHHH
Confidence 348899999999999999888775331 126667888888888887766666543 4333 348865 5566666
Q ss_pred HH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 306 VG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 306 L~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
++ +|||+|- +.+....+++..++++.+.|+.++..
T Consensus 158 I~R~~aY~eAGAD~if-i~~~~~~~~i~~~~~~~~~Pl~v~~~ 199 (238)
T PF13714_consen 158 IERAKAYAEAGADMIF-IPGLQSEEEIERIVKAVDGPLNVNPG 199 (238)
T ss_dssp HHHHHHHHHTT-SEEE-ETTSSSHHHHHHHHHHHSSEEEEETT
T ss_pred HHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 54 5999998 66665457789999999999988874
No 135
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.28 E-value=4 Score=41.55 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecC
Q 038230 237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDV 316 (480)
Q Consensus 237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdV 316 (480)
...|+.+.+.|+|||| +|.++.. .+ ..+..++..+ ++|+.=|..+-+.+..+.+.|++||-.-
T Consensus 86 ~~Ea~~L~~~GvDiID---~Te~lrp----ad-------~~~~~~K~~f---~~~fmad~~~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 86 FVEAQILEALGVDYID---ESEVLTP----AD-------EEYHIDKWDF---TVPFVCGARNLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHHcCCCEEe---ccCCCCc----hH-------HHHHHHHHHc---CCCEEccCCCHHHHHHHHHCCCCeeecc
Confidence 6788999999999999 5665531 11 2334445553 8999999999999999999999999755
No 136
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.21 E-value=1.1 Score=49.31 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
++..++++.++++|||+|-|-+. .|. -..+...|+.|++.. .+++|.. |-..++.++.|.++|+|.
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~---~g~--------~~~~~~~i~~ik~~~--p~~~vi~g~v~t~e~a~~a~~aGaD~ 313 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSS---QGD--------SIYQLEMIKYIKKTY--PELDVIGGNVVTMYQAQNLIQAGVDG 313 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCC---CCC--------cHHHHHHHHHHHHhC--CCCcEEEecCCCHHHHHHHHHcCcCE
Confidence 46789999999999999988751 121 123334567777653 3577755 899999999999999999
Q ss_pred Ee-cC-----------CCC--CC---CchHHHHHHhcCCCEEE
Q 038230 313 VN-DV-----------SAG--QL---DPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 313 IN-dV-----------sg~--~~---d~~m~~l~~~~~~~vVl 338 (480)
|- .+ ++. .. ...+.+++++++++||.
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa 356 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA 356 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE
Confidence 83 11 110 00 02366667777888775
No 137
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.19 E-value=7.5 Score=41.36 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHcCCcCCCCeEEEeC--CCHH--HHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL-IPVLEAVLTMPEMEGKLVSVDT--FYSK--VASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl-~~vi~~l~~~~~~~~~pISIDT--~~~~--v~~aa 305 (480)
.+.++|++.++++-+.+.++|-||.+- +.+. ..+|+.|++.. ++.+|-+|- .++. +++.+
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L-------------~~~~G~~iVk~Lr~~~--~~~~I~~DLK~~Di~~~vv~~~ 246 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPL-------------IKKFGLEVISKIREVR--PDAFIVADLKTLDTGNLEARMA 246 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHH-------------HHHhCHHHHHHHHHhC--CCCeEEEEecccChhhHHHHHH
Confidence 467899999999887778999999521 2222 34567777652 255666653 2222 26778
Q ss_pred HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcC
Q 038230 306 VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHM 341 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~ 341 (480)
.++|++++. |.++... .+.++.++++|+.+++ |-.
T Consensus 247 a~aGAD~vT-VH~ea~~~ti~~ai~~akk~GikvgVD~ln 285 (391)
T PRK13307 247 ADATADAVV-ISGLAPISTIEKAIHEAQKTGIYSILDMLN 285 (391)
T ss_pred HhcCCCEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 889999998 6654322 3467888899988887 543
No 138
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.15 E-value=4.1 Score=40.97 Aligned_cols=124 Identities=27% Similarity=0.350 Sum_probs=79.5
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEE----EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI----DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS 293 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiI----DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS 293 (480)
+++||. ++--...++|+|+ ..|||-+ =+|.++ +.+.++.+..+++.-.+. +.|+.
T Consensus 89 ~l~~~~-~~~~~~~~ve~ai-------~lgadAV~~~Vy~Gse~---------e~~~i~~~~~v~~~a~~~----Gmp~v 147 (265)
T COG1830 89 SLSPDP-NDQVLVATVEDAI-------RLGADAVGATVYVGSET---------EREMIENISQVVEDAHEL----GMPLV 147 (265)
T ss_pred ccCCCc-ccceeeeeHHHHH-------hCCCcEEEEEEecCCcc---------hHHHHHHHHHHHHHHHHc----CCceE
Confidence 457888 7766666766654 6788754 344332 346677777777766665 88887
Q ss_pred E----------e--CCCHHHHH----HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230 294 V----------D--TFYSKVAS----EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD 357 (480)
Q Consensus 294 I----------D--T~~~~v~~----aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~ 357 (480)
+ | -.+++.+. .|.+.|||||- +..-...+.+-++++-.++|||+- |=|++-..
T Consensus 148 ~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK-~~ytg~~e~F~~vv~~~~vpVvia---GG~k~~~~------- 216 (265)
T COG1830 148 AWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK-TKYTGDPESFRRVVAACGVPVVIA---GGPKTETE------- 216 (265)
T ss_pred EEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe-ecCCCChHHHHHHHHhCCCCEEEe---CCCCCCCh-------
Confidence 7 4 36677766 66667999997 332221356677777788998873 33443111
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCC
Q 038230 358 DVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
.++.+.+..+.++|=.
T Consensus 217 -------~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 217 -------REFLEMVTAAIEAGAM 232 (265)
T ss_pred -------HHHHHHHHHHHHccCc
Confidence 5667777777777754
No 139
>PTZ00413 lipoate synthase; Provisional
Probab=92.07 E-value=6.3 Score=41.78 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=100.8
Q ss_pred cEEEEEEecCCC-CCCCCC-----ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 211 TSVMGILNLTPD-SFSDGG-----KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 211 ~~imGIlN~tpD-SFsdgg-----~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
..|||- .-|.| .|..-+ ...|+++.++.|+...+.|+.+.-|-. .+|+. + .+.+.+.+..+|++|++.
T Consensus 152 fmilG~-~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~Gl~~~VVTS-v~RDD---L-~D~ga~~~a~~I~~Ir~~ 225 (398)
T PTZ00413 152 IMVMGD-HCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEMGVDYIVMTM-VDRDD---L-PDGGASHVARCVELIKES 225 (398)
T ss_pred eeecCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEE-EcCCC---C-ChhhHHHHHHHHHHHHcc
Confidence 568886 66777 676633 346999999999999999999887653 23432 1 247889999999999975
Q ss_pred CcCCCCeEEEeCC----CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHH
Q 038230 285 PEMEGKLVSVDTF----YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVC 360 (480)
Q Consensus 285 ~~~~~~pISIDT~----~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~ 360 (480)
. .++.|.+=+. +.+.++.-.++|.+.+| -+-++ -+++++-+.... ..|++-
T Consensus 226 ~--p~~~IevligDf~g~~e~l~~L~eAG~dvyn-HNLET-v~rLyp~VRt~~--------------------atYe~s- 280 (398)
T PTZ00413 226 N--PELLLEALVGDFHGDLKSVEKLANSPLSVYA-HNIEC-VERITPYVRDRR--------------------ASYRQS- 280 (398)
T ss_pred C--CCCeEEEcCCccccCHHHHHHHHhcCCCEEe-ccccc-CHhHHHHHccCc--------------------CCHHHH-
Confidence 2 2455554433 66777777778888888 33333 355554433210 013221
Q ss_pred HHHHHHHHHHHHHHHHC---CCCC-CCEEEecCCCCccChhHHHHHHHhcccCCCcE
Q 038230 361 KQVASELYSKVRDAELS---GIPA-WRIIIDPGLGFSKKAEHNLDILLGLAASHAPI 413 (480)
Q Consensus 361 ~ev~~~l~~~i~~a~~~---Gi~~-~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pi 413 (480)
.+.++.+++. |+.- .-+| +|.|.+.++-+++++.++..|+-+
T Consensus 281 -------Le~Lr~AKe~f~~gi~tcSGiI----VGLGET~eEvie~m~dLrelGVDi 326 (398)
T PTZ00413 281 -------LKVLEHVKEFTNGAMLTKSSIM----LGLGETEEEVRQTLRDLRTAGVSA 326 (398)
T ss_pred -------HHHHHHHHHHhcCCceEeeeeE----ecCCCCHHHHHHHHHHHHHcCCcE
Confidence 1333344433 5531 1122 477888888888888876666654
No 140
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=92.04 E-value=0.91 Score=47.07 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE------eCCC--
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSV------DTFY-- 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI------DT~~-- 298 (480)
.+++...+-|+...+.|+|.||||+....|+.. .-+.....+.+..+++++++. .++||++ |-..
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~---v~~pVsvKiR~g~~~~~t~ 150 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA---VSIPVTVKHRIGIDDQDSY 150 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH---cCCceEEEEEeeeCCCcCH
Confidence 467788888888888999999999865333211 112345677888899999876 3677776 2211
Q ss_pred ---HHHHHHHHHcCCCEEecCCC
Q 038230 299 ---SKVASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 299 ---~~v~~aaL~~G~~iINdVsg 318 (480)
.+.++...++|++.|. |.+
T Consensus 151 ~~~~~~~~~l~~aG~d~i~-vh~ 172 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFI-VHA 172 (333)
T ss_pred HHHHHHHHHHHHhCCCEEE-EcC
Confidence 2445666677999886 543
No 141
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=91.97 E-value=0.51 Score=45.97 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=37.8
Q ss_pred CCCCCCCccCCHHHHH-----------------------------HHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHH
Q 038230 222 DSFSDGGKFQSVEAAV-----------------------------SQVRLMISEGADMIDI-GAQSTRPMATKISAEKEL 271 (480)
Q Consensus 222 DSFsdgg~~~~~e~a~-----------------------------~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~ 271 (480)
||||.-|+.++.++++ +.|.++++.|||+|-- |+-|.+|....+. .-+
T Consensus 91 DsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l--glI 168 (242)
T PF04481_consen 91 DSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL--GLI 168 (242)
T ss_pred HHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH--HHH
Confidence 7788877776666655 6788899999999976 5566677543332 234
Q ss_pred HHHHHHHHHH
Q 038230 272 ERLIPVLEAV 281 (480)
Q Consensus 272 ~rl~~vi~~l 281 (480)
+.-.|.+...
T Consensus 169 ekaapTLAaa 178 (242)
T PF04481_consen 169 EKAAPTLAAA 178 (242)
T ss_pred HHHhHHHHHH
Confidence 4444544433
No 142
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=91.80 E-value=1.6 Score=45.03 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE------eCCC--
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSV------DTFY-- 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI------DT~~-- 298 (480)
.++++..+-|+...+.|+|+||||+....|... .-..-.+.+.+..+++.+++. .++||++ |...
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a---~d~pv~vKiR~G~~~~~~~ 150 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA---VDVPVTLKIRTGWAPEHRN 150 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh---cCCceEEEEEccccCCcch
Confidence 467788888887788999999999754221100 000123456677778888775 3778886 3322
Q ss_pred H-HHHHHHHHcCCCEEecCCCCC--------CC-chHHHHHHhcCCCEEEE
Q 038230 299 S-KVASEAVGKGAHIVNDVSAGQ--------LD-PDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 299 ~-~v~~aaL~~G~~iINdVsg~~--------~d-~~m~~l~~~~~~~vVlm 339 (480)
. +.++.+-++|++.|. |.+.+ .+ +.+.++.+..++|||..
T Consensus 151 ~~~~a~~le~~G~d~i~-vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~n 200 (321)
T PRK10415 151 CVEIAQLAEDCGIQALT-IHGRTRACLFNGEAEYDSIRAVKQKVSIPVIAN 200 (321)
T ss_pred HHHHHHHHHHhCCCEEE-EecCccccccCCCcChHHHHHHHHhcCCcEEEe
Confidence 2 445555667999874 33322 11 22334444467887764
No 143
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.79 E-value=2 Score=45.57 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=126.6
Q ss_pred CCCCCCCcc-----CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC----cCCCCeE
Q 038230 222 DSFSDGGKF-----QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP----EMEGKLV 292 (480)
Q Consensus 222 DSFsdgg~~-----~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~----~~~~~pI 292 (480)
=+|=||-+. ...++.+-.++++-+.|=.-+.+.|..|....-.-=-|+=|+||..+=+.+.+.. ..-.-.+
T Consensus 11 t~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlv 90 (472)
T COG5016 11 TVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLV 90 (472)
T ss_pred eeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccc
Confidence 356676432 4578889999999999999999999877652211112455888865444332210 0001248
Q ss_pred EEeCCCHHHHHHH----HHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHH
Q 038230 293 SVDTFYSKVASEA----VGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQV 363 (480)
Q Consensus 293 SIDT~~~~v~~aa----L~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev 363 (480)
.-+.|.-+|++.- .++|.|++-=..+.++- ..-++.++++|+-+.. +... .|. .+
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~-sPv----------Ht----- 154 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTT-SPV----------HT----- 154 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEecc-CCc----------cc-----
Confidence 8899999987765 44698887655555521 3467888999985542 2222 221 01
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHH
Q 038230 364 ASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDPATIAS 442 (480)
Q Consensus 364 ~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~ 442 (480)
.++..+....+.+.|++ .|.|-=.-|.. ++...+++++.+ +..++|+-+=. + .-.+.+.++
T Consensus 155 ~e~yv~~akel~~~g~D--SIciKDmaGll-tP~~ayelVk~iK~~~~~pv~lHt-------H--------~TsG~a~m~ 216 (472)
T COG5016 155 LEYYVELAKELLEMGVD--SICIKDMAGLL-TPYEAYELVKAIKKELPVPVELHT-------H--------ATSGMAEMT 216 (472)
T ss_pred HHHHHHHHHHHHHcCCC--EEEeecccccC-ChHHHHHHHHHHHHhcCCeeEEec-------c--------cccchHHHH
Confidence 25666777888899995 77765544443 344568899988 45788887621 1 111234455
Q ss_pred HHHHHHcCCcEEEcC
Q 038230 443 ITAGVLGGANIVRVH 457 (480)
Q Consensus 443 ~~~a~~~Ga~IlRvH 457 (480)
...|+++|||+|.+-
T Consensus 217 ylkAvEAGvD~iDTA 231 (472)
T COG5016 217 YLKAVEAGVDGIDTA 231 (472)
T ss_pred HHHHHHhCcchhhhh
Confidence 667889999998763
No 144
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.70 E-value=4.6 Score=40.99 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=70.4
Q ss_pred EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230 217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID 295 (480)
--+|| |.+.|. .|.+...+.++.+++.|++-|=++|. |.-+ ...|. +|..++.. +++.+... ..+.+.+-
T Consensus 12 a~vTP--f~~dg~-iD~~~l~~li~~l~~~Gv~gi~v~Gs-tGE~-~~Lt~-eEr~~v~~~~~~~~~g~---~pvi~gv~ 82 (296)
T TIGR03249 12 FPVTP--FDADGS-FDEAAYRENIEWLLGYGLEALFAAGG-TGEF-FSLTP-AEYEQVVEIAVSTAKGK---VPVYTGVG 82 (296)
T ss_pred eeeCC--cCCCCC-cCHHHHHHHHHHHHhcCCCEEEECCC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEecC
Confidence 34688 876665 78999999999999999999999974 3332 34554 56666654 45444432 23445554
Q ss_pred CCCHH---HHHHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230 296 TFYSK---VASEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM 341 (480)
Q Consensus 296 T~~~~---v~~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~ 341 (480)
+.-.+ .++.|-+.|++-+--+...-. ++++ -.++...+.|+++-+.
T Consensus 83 ~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~ 138 (296)
T TIGR03249 83 GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQR 138 (296)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 32122 223344459997765543211 2333 3344556789998763
No 145
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=91.69 E-value=8.9 Score=39.45 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCC-eEEEeCCCHHHHHHHHHc
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGK-LVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL~~ 308 (480)
+..++.++.|++.|||+|=+.- +.. +...+|+++-.+.+.| +++.+++. ... .+-+.......++.-.+.
T Consensus 180 ~~~~~~~~~~~~~Gad~I~i~d-p~a-~~~~lsp~~f~e~~~p~~k~i~~~i~~~---g~~~ilH~CG~~~~~~~~l~~~ 254 (340)
T TIGR01463 180 DFVIAYAKAMVEAGADVIAIAD-PFA-SSDLISPETYKEFGLPYQKRLFAYIKEI---GGITVLHICGFTQPILRDIANN 254 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEecC-Ccc-CccccCHHHHHHHHHHHHHHHHHHHHhc---CCceEEEECCCchhhHHHHHHh
Confidence 3456778889999999987752 221 2346777643433444 44444432 122 344455554556666667
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
|++.++ +.. ...+.+..+.++=.+++|-.- .|...-. ....+++. +.+.++.+.| +.|+.|
T Consensus 255 g~d~ls-~d~---~~~l~~~~~~~g~~~~i~Gni-dp~~ll~------~gt~eeI~----~~v~~~l~~~----~~Il~~ 315 (340)
T TIGR01463 255 GCFGFS-VDM---KPGMDHAKRVIGGQASLVGNL-SPFSTLM------NGTPEKVK----KLAKEVLYNG----GDIVMP 315 (340)
T ss_pred CCCEEe-ecC---CCCHHHHHHHcCCceEEEecC-ChHHHhc------CCCHHHHH----HHHHHHHHcC----CeEECC
Confidence 999886 332 234555556677667766332 2321100 01112333 3333333333 469999
Q ss_pred CCCCc-cChhHHHHHHHh
Q 038230 389 GLGFS-KKAEHNLDILLG 405 (480)
Q Consensus 389 giGf~-k~~~~~~~~lr~ 405 (480)
|-|.. .+..+|++.+-+
T Consensus 316 gcgi~~~tp~eni~a~v~ 333 (340)
T TIGR01463 316 GCDIDWMTPLENLKAMIE 333 (340)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 99874 566777776654
No 146
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.68 E-value=0.86 Score=46.28 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHH
Q 038230 232 SVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATK--ISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVAS 303 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~ 303 (480)
+.++..+.|+++.+.| +|.|+||..+ |+... -......+.+..+++.+++. .++||++--. + .+.++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~c--P~~~~gg~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~~~~~~~~~a~ 176 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISC--PNVKHGGMAFGTDPELAYEVVKAVKEV---VKVPVIVKLTPNVTDIVEIAK 176 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCC--CCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEEcCCCchhHHHHHH
Confidence 5788899999999999 9999998743 32111 11112345777888888876 3788887533 1 23344
Q ss_pred HHHHcCCCEE
Q 038230 304 EAVGKGAHIV 313 (480)
Q Consensus 304 aaL~~G~~iI 313 (480)
.+.++|++.|
T Consensus 177 ~l~~~G~d~i 186 (301)
T PRK07259 177 AAEEAGADGL 186 (301)
T ss_pred HHHHcCCCEE
Confidence 4445565543
No 147
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.65 E-value=1.9 Score=42.80 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEe--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDI--------GAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDI--------G~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~~~ 299 (480)
|.+.+.+.+.++++++.||+-|=| ++- + .+...++.+|-.+++.-+.++.... .+++ --.|++-.
T Consensus 80 ~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~-~-~~~~~~~~ee~~~ki~aa~~a~~~~---~~~~IiARTDa~~~ 154 (243)
T cd00377 80 YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGH-H-GGKVLVPIEEFVAKIKAARDARDDL---PDFVIIARTDALLA 154 (243)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccC-C-CCCeecCHHHHHHHHHHHHHHHhcc---CCeEEEEEcCchhc
Confidence 447788999999999999999999 331 1 2345778888888887777776651 1333 34466544
Q ss_pred ------HHHH---HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230 300 ------KVAS---EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 300 ------~v~~---aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~ 342 (480)
++++ ++.++|||++- +.+....+++..++++.+.|++++...
T Consensus 155 ~~~~~~eai~Ra~ay~~AGAD~v~-v~~~~~~~~~~~~~~~~~~Pl~~~~~~ 205 (243)
T cd00377 155 GEEGLDEAIERAKAYAEAGADGIF-VEGLKDPEEIRAFAEAPDVPLNVNMTP 205 (243)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHhcCCCCEEEEecC
Confidence 2333 23446999997 444443477888888889999987553
No 148
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=91.58 E-value=1.7 Score=45.16 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=92.2
Q ss_pred CcEEEEEEecC-----CC-CCCCCC----------ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230 210 KTSVMGILNLT-----PD-SFSDGG----------KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER 273 (480)
Q Consensus 210 ~~~imGIlN~t-----pD-SFsdgg----------~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r 273 (480)
...+=+++|++ +| .|..-+ ...+.|++++.|++..+.||.-..+|+ |.+- . .+++++
T Consensus 47 ~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~a-agr~--~----~~~~~~ 119 (335)
T COG0502 47 EVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGA-AGRG--P----GRDMEE 119 (335)
T ss_pred eEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEE-eccC--C----CccHHH
Confidence 36677777775 45 333322 236899999999999999999888886 3331 1 167888
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec------------CCCCCCCc--hHHHHHHhcCCCEEEE
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND------------VSAGQLDP--DMYKVVAGLKVPYVAM 339 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd------------Vsg~~~d~--~m~~l~~~~~~~vVlm 339 (480)
+...++.+++... -.+-+|+=..+.+.+++.-++|++.+|= +++-++++ +.+..++++|..++.=
T Consensus 120 i~~~v~~Vk~~~~-le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsG 198 (335)
T COG0502 120 VVEAIKAVKEELG-LEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSG 198 (335)
T ss_pred HHHHHHHHHHhcC-cHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccc
Confidence 9999999996532 1345777888999999999999999984 22222222 4688889998887754
Q ss_pred cCCCCCCccc
Q 038230 340 HMRGDPSTMQ 349 (480)
Q Consensus 340 h~~g~p~~~~ 349 (480)
-.-|.+.+.+
T Consensus 199 gI~GlGEs~e 208 (335)
T COG0502 199 GIVGLGETVE 208 (335)
T ss_pred eEecCCCCHH
Confidence 4456665543
No 149
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.45 E-value=17 Score=36.55 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=109.0
Q ss_pred EEEEEecCC---CCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 213 VMGILNLTP---DSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 213 imGIlN~tp---DSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
|+|.+-+-| +=+|+++.-.=.|.|++.|+.+.+.|.|-|=|-=+-..|....+++ +-..-|..++.++++. ..
T Consensus 4 vIGmvHl~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p-~tva~m~~i~~~v~~~---~~ 79 (257)
T TIGR00259 4 VIGMVHLLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDP-ETVAAMAVIAGQLKSD---VS 79 (257)
T ss_pred EEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCH-HHHHHHHHHHHHHHHh---cC
Confidence 667666643 2244444333467788888999999999999976667777655665 4455666777888876 37
Q ss_pred CeEEEeCCC---HHHHHHHHHcCCCEEe--cCCCCC-CC--------chHHHHHHhcCCCEEEEcC----CCCCCccccc
Q 038230 290 KLVSVDTFY---SKVASEAVGKGAHIVN--DVSAGQ-LD--------PDMYKVVAGLKVPYVAMHM----RGDPSTMQNE 351 (480)
Q Consensus 290 ~pISIDT~~---~~v~~aaL~~G~~iIN--dVsg~~-~d--------~~m~~l~~~~~~~vVlmh~----~g~p~~~~~~ 351 (480)
+|+.|+-.+ ...+.-|...|++.|- ..+|.- .| .+++++-++.+..+-++.+ .+.| .. .
T Consensus 80 ~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~-l~-~- 156 (257)
T TIGR00259 80 IPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVH-LG-N- 156 (257)
T ss_pred CCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCc-CC-C-
Confidence 888886655 3345555667999875 233210 01 3566676676766666543 2222 11 1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc--cCCCcEEEee
Q 038230 352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA--ASHAPILIGP 417 (480)
Q Consensus 352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~--~~g~Pil~G~ 417 (480)
..+++.+..+...|.. +-||+ -|.+.|+.. +++.++.++ ..+.|+++|-
T Consensus 157 -------------~~~~e~a~~~~~~~~a-Daviv-tG~~TG~~~--d~~~l~~vr~~~~~~Pvllgg 207 (257)
T TIGR00259 157 -------------RDLESIALDTVERGLA-DAVIL-SGKTTGTEV--DLELLKLAKETVKDTPVLAGS 207 (257)
T ss_pred -------------CCHHHHHHHHHHhcCC-CEEEE-CcCCCCCCC--CHHHHHHHHhccCCCeEEEEC
Confidence 1234555556666654 23444 466666543 345565552 3578999973
No 150
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=91.18 E-value=9.4 Score=39.25 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC--CCe-EEEeCCCHHHHHHHHHcCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME--GKL-VSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~--~~p-ISIDT~~~~v~~aaL~~G~ 310 (480)
+..++.++.|+++|||+|=+. ++ .+..+|++.=-+-+.|-++.|.+..... +++ +-+..-....++.-.+.|+
T Consensus 177 ~~~~~~~~~~ieaGad~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~ 252 (335)
T cd00717 177 DATIEYLKAQIEAGAQAVQIF-DS---WAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQLGA 252 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEe-Cc---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHhcCC
Confidence 446778889999999999665 33 2346777553333334444433321111 333 3344444456666666799
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi 390 (480)
++++ +.. ...+.+..+.++=.++++-+- .|.... .. .+++.++..+.++.+. +..+.|+-||-
T Consensus 253 ~~~s-~d~---~~dl~e~k~~~g~~~~i~Gni-~p~~l~-------~~-~e~i~~~v~~~l~~~~----~~~gfIl~~gc 315 (335)
T cd00717 253 DVVG-LDW---RVDLDEARKRLGPKVALQGNL-DPALLY-------AP-KEAIEKEVKRILKAFG----GAPGHIFNLGH 315 (335)
T ss_pred CEEE-eCC---CCCHHHHHHHhCCCeEEEeCC-Chhhhc-------CC-HHHHHHHHHHHHHHhC----cCCCceeecCC
Confidence 8874 332 246777777788777777642 232111 11 1445555555555543 22378999999
Q ss_pred CCc-cChhHHHHHHHh
Q 038230 391 GFS-KKAEHNLDILLG 405 (480)
Q Consensus 391 Gf~-k~~~~~~~~lr~ 405 (480)
|.. .+..+|++.+-+
T Consensus 316 ~i~~~tp~eNi~a~v~ 331 (335)
T cd00717 316 GILPDTPPENVKALVE 331 (335)
T ss_pred cCCCCcCHHHHHHHHH
Confidence 874 667788776543
No 151
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=91.18 E-value=1.9 Score=42.82 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcc
Q 038230 269 KELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTM 348 (480)
Q Consensus 269 eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~ 348 (480)
+++.++ .+..++. ++.....-++.+.++...+.|++.+-=-|+....-.+++.+++.|-|+|+.. |.. +
T Consensus 56 e~~~~L---~~~~~~~----gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST--G~s-t- 124 (241)
T PF03102_consen 56 EQHKEL---FEYCKEL----GIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILST--GMS-T- 124 (241)
T ss_dssp HHHHHH---HHHHHHT----T-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE---TT----
T ss_pred HHHHHH---HHHHHHc----CCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEEC--CCC-C-
Confidence 455554 4555655 8999999999999999999999999866665445789999999999999843 211 1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-CC-ccChhHHHHHHHhcc-cCCCcEEEeecccccccc
Q 038230 349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-GF-SKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGE 425 (480)
Q Consensus 349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-Gf-~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~ 425 (480)
.++.++.++.+.+.|-. +|+|==++ ++ ....+.|+..|..|+ .+++|+ |.|=-+.
T Consensus 125 ---------------l~EI~~Av~~~~~~~~~--~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~v--G~SDHt~--- 182 (241)
T PF03102_consen 125 ---------------LEEIERAVEVLREAGNE--DLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPV--GYSDHTD--- 182 (241)
T ss_dssp ---------------HHHHHHHHHHHHHHCT----EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEE--EEEE-SS---
T ss_pred ---------------HHHHHHHHHHHHhcCCC--CEEEEecCCCCCCChHHcChHHHHHHHHhcCCCE--EeCCCCC---
Confidence 13445666777666665 67765444 34 233356777777763 566666 9881111
Q ss_pred ccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 426 ICNRPSADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 426 v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+. .+..+|+..||.+|-=|
T Consensus 183 ------------g~-~~~~~AvalGA~vIEKH 201 (241)
T PF03102_consen 183 ------------GI-EAPIAAVALGARVIEKH 201 (241)
T ss_dssp ------------SS-HHHHHHHHTT-SEEEEE
T ss_pred ------------Cc-HHHHHHHHcCCeEEEEE
Confidence 22 23457888999998766
No 152
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.11 E-value=9.1 Score=38.57 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=84.1
Q ss_pred HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCC------CHH-HHH---
Q 038230 240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTF------YSK-VAS--- 303 (480)
Q Consensus 240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~------~~~-v~~--- 303 (480)
|+-..++|.|.|=+|-. -..|....++-+|- ...++.+.+. .+. +|+.|.. +++ +++
T Consensus 28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em----~~h~~~V~r~---~~~p~vvaD~pfg~y~~~~~~av~~a~ 100 (264)
T PRK00311 28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDM----IYHTKAVARG---APRALVVADMPFGSYQASPEQALRNAG 100 (264)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHH----HHHHHHHHhc---CCCCcEEEeCCCCCccCCHHHHHHHHH
Confidence 34445789999988721 13455567775443 3445555554 244 4889883 223 333
Q ss_pred HHHH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 304 EAVG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 304 aaL~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
..++ +|++-|| +-+.....+.++.+.+.++||+. |..=+|++......+.-..-..+..+.+.++...++++|..
T Consensus 101 r~~~~aGa~aVk-iEdg~~~~~~I~al~~agIpV~g-HiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~-- 176 (264)
T PRK00311 101 RLMKEAGAHAVK-LEGGEEVAETIKRLVERGIPVMG-HLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAF-- 176 (264)
T ss_pred HHHHHhCCeEEE-EcCcHHHHHHHHHHHHCCCCEee-eecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCC--
Confidence 3455 6999999 54432123445566678889773 44324554322111100000111234455677777899995
Q ss_pred CEEEecCCCCccChhHHHHHHHhc-ccCCCcEE
Q 038230 383 RIIIDPGLGFSKKAEHNLDILLGL-AASHAPIL 414 (480)
Q Consensus 383 ~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil 414 (480)
.++=|++ .. ++.+++ +....|++
T Consensus 177 -~i~lE~v-~~-------~~~~~i~~~l~iP~i 200 (264)
T PRK00311 177 -ALVLECV-PA-------ELAKEITEALSIPTI 200 (264)
T ss_pred -EEEEcCC-CH-------HHHHHHHHhCCCCEE
Confidence 6666666 11 244444 34677875
No 153
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=91.01 E-value=11 Score=38.57 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230 235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN 314 (480)
..++.++.|+++|||+|=+.-.+. +...+|+++=.+-..|.++.+.+..+.....+-++......++.-.+.|++.++
T Consensus 172 ~~~~~~~~~~eaGad~i~i~d~~a--~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~~~~l~~~~~~g~d~~~ 249 (326)
T cd03307 172 ACIEYAKAQLEAGADIITIADPTA--SPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNTTPILEYIAQCGFDGIS 249 (326)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCc--cccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCChhHHHHHHHcCCCeec
Confidence 356778899999999998864221 123457755444444555555443211123344466666667776677999875
Q ss_pred cCCCCCCCchHHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-
Q 038230 315 DVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF- 392 (480)
Q Consensus 315 dVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf- 392 (480)
+.. ...+.+..+.++-.+++|-.- .|. .+.. ...+++. +.+.++.+.|. -|+-||-|.
T Consensus 250 -~d~---~~dl~e~~~~~g~~~~i~Gni-dp~~~l~~-------gt~e~i~----~~~~~~l~~g~----~Il~~Gc~i~ 309 (326)
T cd03307 250 -VDE---KVDVKTAKEIVGGRAALIGNV-SPSQTLLN-------GTPEDVK----AEARKCLEDGV----DILAPGCGIA 309 (326)
T ss_pred -ccc---cCCHHHHHHHcCCceEEEeCC-ChHHHhcC-------CCHHHHH----HHHHHHHHccC----CEecCcCCCC
Confidence 321 235667777788778877442 232 1211 1112333 33334434453 489999997
Q ss_pred ccChhHHHHHHH
Q 038230 393 SKKAEHNLDILL 404 (480)
Q Consensus 393 ~k~~~~~~~~lr 404 (480)
..+..+|++.+-
T Consensus 310 ~~tp~env~a~v 321 (326)
T cd03307 310 PRTPLANLKAMV 321 (326)
T ss_pred CCCCHHHHHHHH
Confidence 456677776654
No 154
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.96 E-value=1.6 Score=45.04 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-------- 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-------- 298 (480)
.+++...+.|+...+.|+|.||||+.-..|... .-.-..+.+++..+++++++. .++|||+=++-
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~---~~~PVsvKiR~g~~~~~~~ 140 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA---VNIPVTVKHRIGIDPLDSY 140 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH---hCCCeEEEEecCCCCcchH
Confidence 466777777888778899999999743222110 111234567788888888876 36777774421
Q ss_pred ---HHHHHHHHHcCCCEEecCCCCC
Q 038230 299 ---SKVASEAVGKGAHIVNDVSAGQ 320 (480)
Q Consensus 299 ---~~v~~aaL~~G~~iINdVsg~~ 320 (480)
.+.++.+.++|++.|- |.+.+
T Consensus 141 ~~~~~~~~~l~~~G~~~it-vHgRt 164 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFI-VHARK 164 (318)
T ss_pred HHHHHHHHHHHHcCCCEEE-EeCCc
Confidence 1345666667999884 66653
No 155
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=90.94 E-value=1.1 Score=43.11 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------H
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMAT----KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--------S 299 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~----~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--------~ 299 (480)
++++..+.|+...++|+|.|+|++....++.. .-+.+...+.+..+++.+++. .+.|++++..- .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~---~~~~v~vk~r~~~~~~~~~~ 141 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA---VPIPVTVKIRLGWDDEEETL 141 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh---cCCCEEEEEeeccCCchHHH
Confidence 57888888888888999999999754222100 011223466677888888876 35788887431 1
Q ss_pred HHHHHHHHcCCCEEe
Q 038230 300 KVASEAVGKGAHIVN 314 (480)
Q Consensus 300 ~v~~aaL~~G~~iIN 314 (480)
+.++...+.|++.|.
T Consensus 142 ~~~~~l~~~Gvd~i~ 156 (231)
T cd02801 142 ELAKALEDAGASALT 156 (231)
T ss_pred HHHHHHHHhCCCEEE
Confidence 223334446998884
No 156
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.84 E-value=6.5 Score=40.10 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=71.5
Q ss_pred EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230 217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID 295 (480)
..+|| |-+.|. .|.+...++++.++++|++-|=++|. |.-+ ...+. ||..++.. +++.+... ..+..++-
T Consensus 14 a~vTP--f~~dg~-iD~~~l~~li~~l~~~Gv~Gi~~~Gs-tGE~-~~Lt~-eEr~~~~~~~~~~~~~~---~pvi~gv~ 84 (303)
T PRK03620 14 FPVTP--FDADGS-FDEAAYREHLEWLAPYGAAALFAAGG-TGEF-FSLTP-DEYSQVVRAAVETTAGR---VPVIAGAG 84 (303)
T ss_pred eeeCC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEecC
Confidence 45688 876665 79999999999999999999999874 3333 23444 56666654 44544432 24455665
Q ss_pred CCCHHHHH---HHHHcCCCEEecCCCCCC---Cch----HHHHHHhcCCCEEEEcCC
Q 038230 296 TFYSKVAS---EAVGKGAHIVNDVSAGQL---DPD----MYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 296 T~~~~v~~---aaL~~G~~iINdVsg~~~---d~~----m~~l~~~~~~~vVlmh~~ 342 (480)
+.-.++++ .|-+.|++-+--+...-. +++ ...++...+.|+++-+..
T Consensus 85 ~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~ 141 (303)
T PRK03620 85 GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD 141 (303)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 42223333 333459887654443211 123 334555578999987643
No 157
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.81 E-value=13 Score=36.97 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQ 256 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~e 256 (480)
+.+++++ ...+.|.+.|++...
T Consensus 22 ~~~e~~~---~~~~~G~~~iEl~~~ 43 (283)
T PRK13209 22 CWLEKLA---IAKTAGFDFVEMSVD 43 (283)
T ss_pred CHHHHHH---HHHHcCCCeEEEecC
Confidence 4555554 445789999999754
No 158
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.77 E-value=7.1 Score=42.57 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=97.3
Q ss_pred CcEEEEEEecCC----C----CCCCC-----CccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCHHHHHHHHH
Q 038230 210 KTSVMGILNLTP----D----SFSDG-----GKFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 210 ~~~imGIlN~tp----D----SFsdg-----g~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~~eE~~rl~ 275 (480)
+..+.++||+|. | |||.. ...++.|++++.|+...+.|+.-+-| +|+.. |. .+++.+.
T Consensus 81 ~I~lfapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p-~~-------~~~eyi~ 152 (469)
T PRK09613 81 RIVLFAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDP-PN-------CDIEYIL 152 (469)
T ss_pred EEEEEEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCC-CC-------CCHHHHH
Confidence 345667887663 2 55532 13478999999999999999998888 44321 21 2366777
Q ss_pred HHHHHHHcCCc----CCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccc
Q 038230 276 PVLEAVLTMPE----MEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNE 351 (480)
Q Consensus 276 ~vi~~l~~~~~----~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~ 351 (480)
.+|+.|++... ...+-|++=-...+..++--++|++.+. +.-++.+++.++- +|..| |..
T Consensus 153 e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~-l~qETY~~ety~~----------~hp~g-~k~---- 216 (469)
T PRK09613 153 ESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQ-LFQETYHKPTYEK----------MHPSG-PKS---- 216 (469)
T ss_pred HHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEEE-eccccCCHHHHHh----------cCCCC-CCC----
Confidence 77777775310 0124566666666666666666766544 2223333433321 23333 210
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
+| ++=.+.+++|.++|++ +|=..-.+|.+....+.+.++.++
T Consensus 217 ---~y--------~~Rl~t~~rA~~aGi~--~Vg~G~L~GLge~~~E~~~l~~hl 258 (469)
T PRK09613 217 ---DY--------DWRLTAMDRAMEAGID--DVGIGVLFGLYDYKFEVLGLLMHA 258 (469)
T ss_pred ---CH--------HHHHHHHHHHHHcCCC--eeCeEEEEcCCCCHHHHHHHHHHH
Confidence 11 2334678899999997 677777788888777777766554
No 159
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=90.68 E-value=1.9 Score=45.31 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=72.6
Q ss_pred EecCCCCC-CCCCccCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 217 LNLTPDSF-SDGGKFQSVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 217 lN~tpDSF-sdgg~~~~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
+=++|+-| .++ -.+.+++++.|+.+.+.| .|+|++-..+..+........ -....+..+.++.. ..+|+..
T Consensus 221 ~Rls~~d~~~~~--g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~--~~~~~~~a~~i~~~---~~~pvi~ 293 (363)
T COG1902 221 VRLSPDDFFDGG--GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG--PGYQVEFAARIKKA---VRIPVIA 293 (363)
T ss_pred EEECccccCCCC--CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc--cchhHHHHHHHHHh---cCCCEEE
Confidence 44577777 444 468899999999999999 699999765554322111111 12333444555554 3567666
Q ss_pred eC--CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230 295 DT--FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL 332 (480)
Q Consensus 295 DT--~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~ 332 (480)
-- +++++++++|+.| +|+|-=-..+-.||.+..-+++-
T Consensus 294 ~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g 334 (363)
T COG1902 294 VGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred eCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence 55 7999999999997 99996444444578877666653
No 160
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.66 E-value=1.2 Score=45.31 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCC--CCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----C-HHHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRP-MATK--ISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----Y-SKVAS 303 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~--v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~-~~v~~ 303 (480)
+.++..+.|+++.+.|||.||+|.....+ +... ..-..+.+.+..+++.+++. .++||++=-. + .+.++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~~~~~~~~~~a~ 187 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLTPNITDIREIAR 187 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECCCCchhHHHHHH
Confidence 55788888888877899999999754332 1010 01123456677788888865 3677776322 2 24455
Q ss_pred HHHHcCCCE
Q 038230 304 EAVGKGAHI 312 (480)
Q Consensus 304 aaL~~G~~i 312 (480)
.+.++|++-
T Consensus 188 ~~~~~Gadg 196 (299)
T cd02940 188 AAKEGGADG 196 (299)
T ss_pred HHHHcCCCE
Confidence 555566553
No 161
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.58 E-value=6.1 Score=40.18 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=70.1
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~ 297 (480)
+|| |-+.|. .|.+...++++.+++.|++-|=++| ||.-+ ...|. +|..++.. +++..... ..+...+=+.
T Consensus 9 ~TP--f~~dg~-iD~~~l~~lv~~~~~~Gv~gi~v~G-stGE~-~~Ls~-~Er~~l~~~~~~~~~g~---~pvi~gv~~~ 79 (294)
T TIGR02313 9 ITP--FKRNGD-IDEEALRELIEFQIEGGSHAISVGG-TSGEP-GSLTL-EERKQAIENAIDQIAGR---IPFAPGTGAL 79 (294)
T ss_pred eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cCccc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEEECCcc
Confidence 577 766665 7999999999999999999999998 44433 24454 55555544 45544432 1233344333
Q ss_pred CHH-H---HHHHHHcCCCEEecCCCCCC---CchH----HHHHHhc-CCCEEEEcC
Q 038230 298 YSK-V---ASEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGL-KVPYVAMHM 341 (480)
Q Consensus 298 ~~~-v---~~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~-~~~vVlmh~ 341 (480)
+.+ + ++.|-+.|+|-+--+.-.-. ++++ ..++... +.|+++-+.
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 333 2 34555569998876654211 1333 3345556 799998664
No 162
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.56 E-value=9.4 Score=41.39 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCC--HHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFY--SKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~--~~v~~a 304 (480)
+.+.+..++.|+++.+.|||.|=|.= |. ....+ ++..+ +++.+++. .++||.+ ||+- ....-+
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~D--t~---G~l~P-~~v~~---lv~alk~~---~~~pi~~H~Hnt~GlA~AN~la 217 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKD--MA---GILTP-YVAYE---LVKRIKEA---VTVPLEVHTHATSGIAEMTYLK 217 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcC--CC---CCCCH-HHHHH---HHHHHHHh---cCCeEEEEecCCCCcHHHHHHH
Confidence 46889999999999999999998861 11 11122 44444 45666665 3689999 4433 455678
Q ss_pred HHHcCCCEEecC
Q 038230 305 AVGKGAHIVNDV 316 (480)
Q Consensus 305 aL~~G~~iINdV 316 (480)
|+++|+++|..-
T Consensus 218 AieaGad~vD~s 229 (448)
T PRK12331 218 AIEAGADIIDTA 229 (448)
T ss_pred HHHcCCCEEEee
Confidence 899999998743
No 163
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.55 E-value=2.1 Score=46.29 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
++..++++.++++|+|+|-|-. +.... ..+...|+.|++.+ .++||.. +-..++.+++++++|++.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~--a~g~~---------~~~~~~i~~i~~~~--~~~~vi~G~v~t~~~a~~l~~aGad~ 289 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDS--SHGHS---------IYVIDSIKEIKKTY--PDLDIIAGNVATAEQAKALIDAGADG 289 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEEC--CCCcH---------hHHHHHHHHHHHhC--CCCCEEEEeCCCHHHHHHHHHhCCCE
Confidence 4678899999999999999974 22111 23445677777653 4788888 999999999999999999
Q ss_pred E
Q 038230 313 V 313 (480)
Q Consensus 313 I 313 (480)
|
T Consensus 290 i 290 (450)
T TIGR01302 290 L 290 (450)
T ss_pred E
Confidence 8
No 164
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=90.51 E-value=6.2 Score=38.13 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGAH 311 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~~ 311 (480)
.+.++.|+.+.+.|||.|.|=-.+..-... ... .+.++.+.+. .++|+.++- .+++-++++++.|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~----~~~----~~~i~~i~~~---~~~pv~~~GgI~~~e~~~~~~~~Gad 97 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGE----PVN----LELIEEIVKA---VGIPVQVGGGIRSLEDIERLLDLGVS 97 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCC----CCC----HHHHHHHHHh---cCCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 357778889999999877763221110000 011 2345556655 368888854 899999999999988
Q ss_pred EEecCCCCCCCch-HHHHHHhcCC-CEEEEcC--CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 312 IVNDVSAGQLDPD-MYKVVAGLKV-PYVAMHM--RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 312 iINdVsg~~~d~~-m~~l~~~~~~-~vVlmh~--~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
.+-=-+..-.+++ +.+++++++- .+++.-. .|...+.... ... . ....+.++.+.+.|.. .|++=
T Consensus 98 ~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~-~~~-~-------~~~~~~~~~~~~~ga~--~iii~ 166 (234)
T cd04732 98 RVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL-ETS-E-------VSLEELAKRFEELGVK--AIIYT 166 (234)
T ss_pred EEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe-eec-C-------CCHHHHHHHHHHcCCC--EEEEE
Confidence 6542222222444 5666666765 5554321 1111000000 000 0 1223556677788886 55553
Q ss_pred cC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 388 PG--LGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 388 Pg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.- -|.. ...++++++++ +..+.|++.+
T Consensus 167 ~~~~~g~~--~g~~~~~i~~i~~~~~ipvi~~ 196 (234)
T cd04732 167 DISRDGTL--SGPNFELYKELAAATGIPVIAS 196 (234)
T ss_pred eecCCCcc--CCCCHHHHHHHHHhcCCCEEEe
Confidence 21 1221 12357788887 3468998875
No 165
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=90.38 E-value=7.8 Score=41.31 Aligned_cols=184 Identities=14% Similarity=0.219 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH-HcC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV-GKG 309 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL-~~G 309 (480)
++.++.++..++|.++|.|++-|=+.-|+ ..++.+++. +-...|=|+-=..+.+=. ..+
T Consensus 140 mt~d~~~~~ie~qa~~GVDfmTiHcGi~~----------------~~~~~~~~~----~R~~giVSRGGs~~~~WM~~n~ 199 (431)
T PRK13352 140 MTEDDLFDVIEKQAKDGVDFMTIHCGVTR----------------ETLERLKKS----GRIMGIVSRGGSFLAAWMLHNN 199 (431)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchhH----------------HHHHHHHhc----CCccCeecCCHHHHHHHHHHcC
Confidence 56789999999999999999999864332 233444432 112233333333332221 122
Q ss_pred CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-c
Q 038230 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-P 388 (480)
Q Consensus 310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-P 388 (480)
.. |=.. +.-+++++++++|++.+=|=.-- .|.......+ ..=+.|+ ..+-+++++|.++|+- +++. |
T Consensus 200 ~E--NPly--e~fD~lLeI~~~yDVtlSLGDgl-RPG~i~Da~D---~aQi~El-~~lgeL~~RA~e~gVQ---vMVEGP 267 (431)
T PRK13352 200 KE--NPLY--EHFDYLLEILKEYDVTLSLGDGL-RPGCIADATD---RAQIQEL-ITLGELVKRAREAGVQ---VMVEGP 267 (431)
T ss_pred Cc--CchH--HHHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEECC
Confidence 11 1010 01278999999999876653210 1332222111 1113333 3577899999999995 5554 6
Q ss_pred CCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230 389 GLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR 455 (480)
Q Consensus 389 giGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR 455 (480)
|.-.-...+.|+++.+++ ..+.|..+ |. -+|.-.+--|.. .++.-.++|...|||++=
T Consensus 268 GHvPl~~I~~nv~l~K~l-c~~APfYvLGP-------LvTDiApGYDHI-t~AIGgAiAa~~GAdfLC 326 (431)
T PRK13352 268 GHVPLDQIEANVKLQKRL-CHGAPFYVLGP-------LVTDIAPGYDHI-TSAIGGAIAAAAGADFLC 326 (431)
T ss_pred CCCCHHHHHHHHHHHHHh-hCCCCceecCc-------cccccCCCchHH-HHHHHHHHHHhcCCCeEE
Confidence 655566678889998886 33667643 32 122222112332 333347888999999874
No 166
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=90.35 E-value=7.1 Score=37.91 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G 309 (480)
+.++.|+.+.+.|++ ++|+.+.-+..+. . .++++.+.+. +++|+.+ +-...+-+++.++.|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~---n--------~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G 96 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREP---L--------FELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLG 96 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCC---C--------HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcC
Confidence 567788888899999 9999986443321 1 2345555554 3678888 668888999999999
Q ss_pred CCEEecCCCCC-CCch-HHHHHHhcCCC-EEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 310 AHIVNDVSAGQ-LDPD-MYKVVAGLKVP-YVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 310 ~~iINdVsg~~-~d~~-m~~l~~~~~~~-vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
++.+- +.... .+++ +.++++.|+-. +++. .. .+...+..+-....+.+. ......+.+..+.++|+. .|
T Consensus 97 ~~~vi-lg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~G~d--~i 170 (232)
T TIGR03572 97 ADKVS-INTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRA---TGRDPVEWAREAEQLGAG--EI 170 (232)
T ss_pred CCEEE-EChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCccc---CCCCHHHHHHHHHHcCCC--EE
Confidence 87552 32221 2444 55566667655 3322 22 221100000000000000 001123556677889996 56
Q ss_pred EEecCCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 385 IIDPGLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 385 ilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
++-.-..-+.....++++++++ +..+.|++.+
T Consensus 171 ~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 203 (232)
T TIGR03572 171 LLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL 203 (232)
T ss_pred EEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE
Confidence 6654111111122357888887 3468898764
No 167
>PLN02433 uroporphyrinogen decarboxylase
Probab=90.31 E-value=9.5 Score=39.58 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHH
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGKLVSV--DTFYSKVASEAVG 307 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~ 307 (480)
+...+.++.|+++||++|=|. .| -+..+|+++=.+-+.| +++.+++.. .+.|+.+ .-. ...++.-.+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~--~~~~~ilh~cG~-~~~~~~~~~ 251 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIF-DS---WAGHLSPVDFEEFSKPYLEKIVDEVKARH--PDVPLILYANGS-GGLLERLAG 251 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cC---ccccCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEeCCC-HHHHHHHHh
Confidence 445677888999999988764 22 2346777553333333 445554321 1345444 222 245666666
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
.|++.+| +. ....+.+..+..+-.++++-+- .| .+-. -. -+++.+...+.++.+.. ..-|+-
T Consensus 252 ~~~~~i~-~d---~~~dl~e~~~~~g~~~~l~GNi-~p-~ll~---gt----~e~i~~~v~~~i~~~~~-----~g~Il~ 313 (345)
T PLN02433 252 TGVDVIG-LD---WTVDMADARRRLGSDVAVQGNV-DP-AVLF---GS----KEAIEKEVRDVVKKAGP-----QGHILN 313 (345)
T ss_pred cCCCEEE-cC---CCCCHHHHHHHhCCCeEEEeCC-Cc-hhhC---CC----HHHHHHHHHHHHHHcCC-----CCeEEe
Confidence 7999887 32 1245666666677667776542 13 2211 11 23344444455554322 237999
Q ss_pred cCCCCc-cChhHHHHHHHhc-ccCCCcEE
Q 038230 388 PGLGFS-KKAEHNLDILLGL-AASHAPIL 414 (480)
Q Consensus 388 PgiGf~-k~~~~~~~~lr~l-~~~g~Pil 414 (480)
||-|.. .+..+|++.+-+. +..+.+++
T Consensus 314 ~Gc~i~~~tp~eNi~a~v~av~~~~~~~~ 342 (345)
T PLN02433 314 LGHGVLVGTPEENVAHFFDVARELRYEMI 342 (345)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhChhhh
Confidence 999974 5667787766553 44455543
No 168
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=90.31 E-value=21 Score=35.59 Aligned_cols=185 Identities=18% Similarity=0.276 Sum_probs=107.4
Q ss_pred CCcEEEEEEecCC--CCCCCCC-ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230 209 LKTSVMGILNLTP--DSFSDGG-KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP 285 (480)
Q Consensus 209 ~~~~imGIlN~tp--DSFsdgg-~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~ 285 (480)
.+.-+.|++-+-| -|-|+++ .-.=.|.|++.|.++.+.|+|-|=+==.-..|....+++ +-..-|.-+++++++.
T Consensus 6 ~~k~vIGvvHL~PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~-~tvaaMa~iv~~v~r~- 83 (263)
T COG0434 6 TKKPVIGVVHLLPLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGP-ETVAAMAVIVREVVRE- 83 (263)
T ss_pred CCCceEEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCh-HHHHHHHHHHHHHHHh-
Confidence 3445888888765 2445544 222356777888999999999888865567788777776 4466677788888876
Q ss_pred cCCCCeEEEeCCC-HHHHHHHHH--cCCCEEe--cCCCC--C----CCc---hHHHHHHhcCCCEEEEcC----CCCCCc
Q 038230 286 EMEGKLVSVDTFY-SKVASEAVG--KGAHIVN--DVSAG--Q----LDP---DMYKVVAGLKVPYVAMHM----RGDPST 347 (480)
Q Consensus 286 ~~~~~pISIDT~~-~~v~~aaL~--~G~~iIN--dVsg~--~----~d~---~m~~l~~~~~~~vVlmh~----~g~p~~ 347 (480)
..+|+.|.-.+ ..+...++. .|++.|- -.++- + .+. +++++-+..+..+=++.+ .+.|-.
T Consensus 84 --v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~ 161 (263)
T COG0434 84 --VSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLG 161 (263)
T ss_pred --ccccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccC
Confidence 48999998776 333333333 3888774 33331 1 112 344444555544443322 122211
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccCh-hHHHHHHHhcccCCCcEEEee
Q 038230 348 MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKA-EHNLDILLGLAASHAPILIGP 417 (480)
Q Consensus 348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~-~~~~~~lr~l~~~g~Pil~G~ 417 (480)
. ..+++.+..+.+.|.. +-+|+ -|-..|... .+.+++.++ ..+.|+|+|-
T Consensus 162 ~----------------~~~~~~v~dtver~~a-DaVI~-tG~~TG~~~d~~el~~a~~--~~~~pvlvGS 212 (263)
T COG0434 162 N----------------RSLEEAVKDTVERGLA-DAVIV-TGSRTGSPPDLEELKLAKE--AVDTPVLVGS 212 (263)
T ss_pred C----------------cCHHHHHHHHHHccCC-CEEEE-ecccCCCCCCHHHHHHHHh--ccCCCEEEec
Confidence 0 1244555565566665 33443 455444432 222444444 3569999984
No 169
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.28 E-value=14 Score=38.41 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=73.9
Q ss_pred HHHHHHcCCCEEEeCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eC----C--CHH-HHHHH-
Q 038230 240 VRLMISEGADMIDIGAQ-----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DT----F--YSK-VASEA- 305 (480)
Q Consensus 240 A~~~v~~GAdiIDIG~e-----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT----~--~~~-v~~aa- 305 (480)
|+-+-++|+|+|=+|=. -..+...+|+ ++.++...+.+++- .+.+++| |- | +++ +++.|
T Consensus 48 A~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vt----ld~mi~H~~aV~Rg---a~~a~vVaDmPfgSY~~s~e~av~nA~ 120 (332)
T PLN02424 48 AVHVDSAGIDVCLVGDSAAMVVHGHDTTLPIT----LDEMLVHCRAVARG---ANRPLLVGDLPFGSYESSTDQAVESAV 120 (332)
T ss_pred HHHHHHcCCCEEEECCcHHHHhcCCCCCCCcC----HHHHHHHHHHHhcc---CCCCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 45556789999999811 0112333566 44555566777765 3667777 53 3 343 33333
Q ss_pred --HH-cCCCEEecCCCC-CCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 306 --VG-KGAHIVNDVSAG-QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 306 --L~-~G~~iINdVsg~-~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
++ .|++.|| +-|+ ...-+.++.+.+.|+||+. |..=+|++....-.|.-..--.+-...+.+....++++|..
T Consensus 121 rl~~eaGa~aVK-lEGg~~~~~~~I~~l~~~GIPV~g-HiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf- 197 (332)
T PLN02424 121 RMLKEGGMDAVK-LEGGSPSRVTAAKAIVEAGIAVMG-HVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCF- 197 (332)
T ss_pred HHHHHhCCcEEE-ECCCcHHHHHHHHHHHHcCCCEEE-eecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCc-
Confidence 23 6999999 6655 2123444455588999883 43224443322111000000112223455677778899996
Q ss_pred CCEEEecCC
Q 038230 382 WRIIIDPGL 390 (480)
Q Consensus 382 ~~IilDPgi 390 (480)
-|+=|++
T Consensus 198 --~ivLE~V 204 (332)
T PLN02424 198 --AVVLECV 204 (332)
T ss_pred --EEEEcCC
Confidence 4444455
No 170
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=90.26 E-value=5.7 Score=41.24 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-------------EeC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-------------VDT 296 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-------------IDT 296 (480)
..++|++++.+++..+.|+.-|-+-+. ..|. .+.+++..+++.|++.. .++.++ ++.
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG-~~p~-------~~~~~~~~i~~~Ik~~~--~~i~~~~~t~~ei~~~~~~~g~ 138 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGG-IHPD-------LDGDFYLDILRAVKEEV--PGMHIHAFSPMEVYYGARNSGL 138 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeC-CCCC-------CCHHHHHHHHHHHHHHC--CCceEEecCHHHHHHHHHHcCC
Confidence 379999999999999999998888631 1232 24677788888888752 234332 345
Q ss_pred CCHHHHHHHHHcCCCEEec
Q 038230 297 FYSKVASEAVGKGAHIVND 315 (480)
Q Consensus 297 ~~~~v~~aaL~~G~~iINd 315 (480)
..++++++--++|.+.++.
T Consensus 139 ~~~e~l~~LkeAGl~~i~~ 157 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMPG 157 (343)
T ss_pred CHHHHHHHHHHhCcccccC
Confidence 5677777767778777763
No 171
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=90.22 E-value=1.3 Score=47.23 Aligned_cols=84 Identities=18% Similarity=0.063 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCC--CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH-HHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTR-PMAT--KISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS-KVAS 303 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStr-P~a~--~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~-~v~~ 303 (480)
+.++..+.|+.+.+.|||.||+|..+.. +... ...-.+..+.+..+++.+++. .++||++ |..+. +.++
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKl~p~~~~~~~~a~ 187 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG---SRLPVIVKLTPNITDIREPAR 187 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc---cCCcEEEEcCCCcccHHHHHH
Confidence 4577888888888899999999975532 1100 011113456677788888876 3677665 44343 5566
Q ss_pred HHHHcCCC---EEecCCC
Q 038230 304 EAVGKGAH---IVNDVSA 318 (480)
Q Consensus 304 aaL~~G~~---iINdVsg 318 (480)
++.++|++ ++|.+.+
T Consensus 188 ~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 188 AAKRGGADAVSLINTINS 205 (420)
T ss_pred HHHHCCCCEEEEecccCc
Confidence 66777766 5565544
No 172
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.17 E-value=8.4 Score=39.00 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=70.0
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeC
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT 296 (480)
-+|| |-+.|. .|.+...++++.+++.|++-|=++|. |.-+ ...|. ||..++.. +++..... ..+.+++-.
T Consensus 8 ~vTP--f~~dg~-iD~~~l~~l~~~l~~~Gv~gi~v~Gs-tGE~-~~Ls~-eEr~~l~~~~~~~~~~~---~pvi~gv~~ 78 (289)
T cd00951 8 PVTH--FDADGS-FDEDAYRAHVEWLLSYGAAALFAAGG-TGEF-FSLTP-DEYAQVVRAAVEETAGR---VPVLAGAGY 78 (289)
T ss_pred eecC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcC-CcCc-ccCCH-HHHHHHHHHHHHHhCCC---CCEEEecCC
Confidence 4688 766664 79999999999999999999999983 4433 34454 56666655 44444332 244555543
Q ss_pred CCHHHHH---HHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230 297 FYSKVAS---EAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM 341 (480)
Q Consensus 297 ~~~~v~~---aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~ 341 (480)
.-.++++ .|-++|++-+-.+...-. ++++ ..++...+.|+++-+.
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 2223332 334459997765544211 1333 3344457889888663
No 173
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.16 E-value=4.4 Score=41.92 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCC---------CCCCC----CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--
Q 038230 233 VEAAVSQVRLMISEGADMIDIGAQ---------STRPM----ATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-- 297 (480)
Q Consensus 233 ~e~a~~~A~~~v~~GAdiIDIG~e---------StrP~----a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-- 297 (480)
.++..+-|++..++|.|.|+|.+. |...+ .=.-|.+.-++-+..+|++|++... .+.+|++|-.
T Consensus 148 i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris~~ 226 (338)
T cd04733 148 IDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcHH
Confidence 344556778888999999999754 32221 1123567778888899999998642 2688998763
Q ss_pred -------CHHHH----HHHHHcCCCEEecCCCC
Q 038230 298 -------YSKVA----SEAVGKGAHIVNDVSAG 319 (480)
Q Consensus 298 -------~~~v~----~aaL~~G~~iINdVsg~ 319 (480)
+++.+ +..-+.|+++|+ |+++
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~ie-v~~g 258 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVE-LSGG 258 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEE-ecCC
Confidence 43333 233335999997 4443
No 174
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.14 E-value=12 Score=36.15 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=57.7
Q ss_pred CCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE------------
Q 038230 226 DGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS------------ 293 (480)
Q Consensus 226 dgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS------------ 293 (480)
.||...+.+.+.+.|+.+.+.|+..+.+|. + +.++. +++. .++|+.
T Consensus 19 ~~~~~~~~~~i~~~a~~~~~~G~~~~~~~~----~--------~~~~~-------i~~~---~~iPil~~~~~~~~~~~~ 76 (219)
T cd04729 19 PGEPLHSPEIMAAMALAAVQGGAVGIRANG----V--------EDIRA-------IRAR---VDLPIIGLIKRDYPDSEV 76 (219)
T ss_pred CCCCcCcHHHHHHHHHHHHHCCCeEEEcCC----H--------HHHHH-------HHHh---CCCCEEEEEecCCCCCCc
Confidence 366677888999999999999999999742 1 22322 2222 244542
Q ss_pred -EeCCCHHHHHHHHHcCCCEEecCCCCC------CCchHHHHHHhcC-CCEEE
Q 038230 294 -VDTFYSKVASEAVGKGAHIVNDVSAGQ------LDPDMYKVVAGLK-VPYVA 338 (480)
Q Consensus 294 -IDT~~~~v~~aaL~~G~~iINdVsg~~------~d~~m~~l~~~~~-~~vVl 338 (480)
||. +.+-++.|.++|+++|-...... ...++++.+++++ .++++
T Consensus 77 ~ig~-~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 77 YITP-TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred eeCC-CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 332 35578999999999775432221 1246777777887 55544
No 175
>PRK05481 lipoyl synthase; Provisional
Probab=90.07 E-value=7.4 Score=39.55 Aligned_cols=142 Identities=14% Similarity=0.179 Sum_probs=87.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASE 304 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~a 304 (480)
+..+++++++.|+++.+.|+.-|-+=++..... + +.....+..+++.|++.. .++.|.+-|.+ .+.+..
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~----~-~~~~~~l~~Ll~~I~~~~--p~irI~~l~~~~~~~~e~L~~ 150 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDL----P-DGGAQHFAETIRAIRELN--PGTTIEVLIPDFRGRMDALLT 150 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCc----c-cccHHHHHHHHHHHHhhC--CCcEEEEEccCCCCCHHHHHH
Confidence 347899999999999999998887765432110 0 012345666777777642 24555555554 367777
Q ss_pred HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCC
Q 038230 305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAW 382 (480)
Q Consensus 305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~ 382 (480)
..++|+.+++..- +. .+++++. |+. + +.+ +...+.++.+.+. |+.
T Consensus 151 l~~ag~~i~~~~~-et-s~~vlk~----------m~r-~----------~t~--------e~~le~i~~ar~~~pgi~-- 197 (289)
T PRK05481 151 VLDARPDVFNHNL-ET-VPRLYKR----------VRP-G----------ADY--------ERSLELLKRAKELHPGIP-- 197 (289)
T ss_pred HHhcCcceeeccc-cC-hHHHHHH----------hCC-C----------CCH--------HHHHHHHHHHHHhCCCCe--
Confidence 7788888877442 11 1233322 111 1 111 3345777888888 885
Q ss_pred CEEEecCCCCccChhHHHHHHHhcccCCC
Q 038230 383 RIIIDPGLGFSKKAEHNLDILLGLAASHA 411 (480)
Q Consensus 383 ~IilDPgiGf~k~~~~~~~~lr~l~~~g~ 411 (480)
+--|=.+||+.+.++-.+++..++..++
T Consensus 198 -~~t~~IvGfGET~ed~~~tl~~lrel~~ 225 (289)
T PRK05481 198 -TKSGLMVGLGETDEEVLEVMDDLRAAGV 225 (289)
T ss_pred -EeeeeEEECCCCHHHHHHHHHHHHhcCC
Confidence 6677778999888776666666543443
No 176
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=90.01 E-value=17 Score=38.98 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CCCeEEEeCCCHH-HHHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EGKLVSVDTFYSK-VASEA 305 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~~pISIDT~~~~-v~~aa 305 (480)
|..++.++-++.|+++-+.|.++|.+|..+..|+ +.+-+ +.+...... ....+.-....-+ -++++
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~--------~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~ea~ 85 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPG--------DFEFV----RAIAEKAGLFICALIAALARAIKRDIEAL 85 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChh--------hHHHH----HHHHHhcCcccchhhhhhHHhHHhhHHHH
Confidence 4458899999999999999999999998655543 22222 222211000 0122222233333 67788
Q ss_pred HHcCCCEEecCCCCC---------CC--------chHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHH
Q 038230 306 VGKGAHIVNDVSAGQ---------LD--------PDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASE 366 (480)
Q Consensus 306 L~~G~~iINdVsg~~---------~d--------~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~ 366 (480)
+++|++.|--+.+.. .. .+..+.+++++..+.. .+.. . .+ .++
T Consensus 86 ~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~---r-----t~----------~~~ 147 (409)
T COG0119 86 LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDAT---R-----TD----------PEF 147 (409)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccc---c-----CC----------HHH
Confidence 888877654443321 01 1357778889977773 3322 1 11 167
Q ss_pred HHHHHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhc
Q 038230 367 LYSKVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 367 l~~~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l 406 (480)
+.+.++.+..+|.. .|.+ |- +|.+ ++.+..++++.+
T Consensus 148 l~~~~~~~~~~ga~--~i~l~DT-vG~~-~P~~~~~~i~~l 184 (409)
T COG0119 148 LAEVVKAAIEAGAD--RINLPDT-VGVA-TPNEVADIIEAL 184 (409)
T ss_pred HHHHHHHHHHcCCc--EEEECCC-cCcc-CHHHHHHHHHHH
Confidence 77888888888875 3333 32 3332 234455666665
No 177
>PLN02417 dihydrodipicolinate synthase
Probab=90.00 E-value=6.5 Score=39.62 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=68.6
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeC
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT 296 (480)
-+|| |-+.|. .|.+...++++.+++.|++-|=++|- |.-+ ...+ .+|..++.. +++.+... ..+...+-+
T Consensus 9 ~~TP--f~~~g~-iD~~~~~~~i~~l~~~Gv~Gi~~~Gs-tGE~-~~ls-~~Er~~~~~~~~~~~~~~---~pvi~gv~~ 79 (280)
T PLN02417 9 IKTP--YLPDGR-FDLEAYDSLVNMQIENGAEGLIVGGT-TGEG-QLMS-WDEHIMLIGHTVNCFGGK---IKVIGNTGS 79 (280)
T ss_pred eeCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECcc-Ccch-hhCC-HHHHHHHHHHHHHHhCCC---CcEEEECCC
Confidence 3578 765554 79999999999999999999999974 3333 2344 466666654 44444332 233445544
Q ss_pred CCHH-HH---HHHHHcCCCEEecCCCCCC---Cch---HHHHHHhcCCCEEEEcC
Q 038230 297 FYSK-VA---SEAVGKGAHIVNDVSAGQL---DPD---MYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 297 ~~~~-v~---~aaL~~G~~iINdVsg~~~---d~~---m~~l~~~~~~~vVlmh~ 341 (480)
.+.+ ++ +.|-++|+|-+--+...-. +++ .+.-+++.. |+++-+.
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~-pi~lYn~ 133 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG-PTIIYNV 133 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC-CEEEEEC
Confidence 4443 33 3344569997776644211 133 344445556 8887654
No 178
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=89.79 E-value=3.8 Score=41.79 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCC---CCC---CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGA---QST---RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS 303 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~---eSt---rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~ 303 (480)
..+++++.+..+++++.|++.|=+=. ..+ .++....+ .+++. .+++..++. +.++.+=......++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~---~~~~~A~~~----g~~v~~H~~~~~~i~ 187 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELR---AIVDEAHKA----GLYVAAHAYGAEAIR 187 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHH---HHHHHHHHc----CCEEEEEeCCHHHHH
Confidence 45689999999999999999995422 111 11111233 24444 456666765 899999999999999
Q ss_pred HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230 304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm 339 (480)
.++++|++.|-=.. ..+++.++.+++.|+.++..
T Consensus 188 ~~l~~G~~~i~H~~--~~~~~~~~~l~~~g~~~~~t 221 (342)
T cd01299 188 RAIRAGVDTIEHGF--LIDDETIELMKEKGIFLVPT 221 (342)
T ss_pred HHHHcCCCEEeecC--CCCHHHHHHHHHCCcEEeCc
Confidence 99999998774332 23578899999999988754
No 179
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.53 E-value=1.3 Score=45.51 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC--C-CCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--------C
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMA--T-KIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTF--------Y 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a--~-~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--------~ 298 (480)
.++++..+.|+...+.|+|.||||+.+..+.. . .-+ .....+.+..+++.+++. .++||++-.+ .
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~---~~~pv~vKir~g~~~~~~~ 148 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA---VDIPVTVKIRIGWDDAHIN 148 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh---cCCCEEEEEEcccCCCcch
Confidence 46688888888888899999999875422110 1 111 123467788888888876 4788887542 1
Q ss_pred -HHHHHHHHHcCCCEEe
Q 038230 299 -SKVASEAVGKGAHIVN 314 (480)
Q Consensus 299 -~~v~~aaL~~G~~iIN 314 (480)
.+.++.+.+.|++.|.
T Consensus 149 ~~~~a~~l~~~G~d~i~ 165 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVT 165 (319)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 2334444455777664
No 180
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.46 E-value=6.5 Score=38.98 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHc
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQ-STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGK 308 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~e-StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~ 308 (480)
+.++.|+.+.+.|| +++|+.+. ..++ .-..+|+.|.+. . .|+.++ -++.+-++..++.
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~------------~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~ 94 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSV------------ENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKL 94 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCc------------chHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHC
Confidence 56778999999999 58899852 2222 123456666665 2 588886 4788999999999
Q ss_pred CCCE--EecCCCCCCCchHHHHHHhcCCCEEE-EcC-CCCCCcc--ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 309 GAHI--VNDVSAGQLDPDMYKVVAGLKVPYVA-MHM-RGDPSTM--QNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 309 G~~i--INdVsg~~~d~~m~~l~~~~~~~vVl-mh~-~g~p~~~--~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
|++- ||+.. .+ ++++++-+++|+-.+|+ +.. +|...+- ++... -.+.+.++++.+.|+. +
T Consensus 95 Ga~rvvigT~a-~~-~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~-----------~~~~e~~~~~~~~g~~-~ 160 (241)
T PRK14114 95 GYRRQIVSSKV-LE-DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEE-----------IDPVSLLKRLKEYGLE-E 160 (241)
T ss_pred CCCEEEECchh-hC-CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCC-----------CCHHHHHHHHHhcCCC-E
Confidence 9874 66554 22 68877777888755554 333 2321110 01111 2345667788899986 2
Q ss_pred CEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 383 RIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 383 ~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
=|+-|- |.+-|- ++++++++ +..+.|++.+
T Consensus 161 ii~tdI~rdGt~~G~----d~el~~~l~~~~~~pvias 194 (241)
T PRK14114 161 IVHTEIEKDGTLQEH----DFSLTRKIAIEAEVKVFAA 194 (241)
T ss_pred EEEEeechhhcCCCc----CHHHHHHHHHHCCCCEEEE
Confidence 344444 443343 46667776 3468899863
No 181
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=89.37 E-value=24 Score=34.89 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQS 257 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS 257 (480)
..+.+++++.+. +.|-+.|++....
T Consensus 15 ~~~~~e~~~~~~---~~G~~~iEl~~~~ 39 (284)
T PRK13210 15 HLSWEERLVFAK---ELGFDFVEMSVDE 39 (284)
T ss_pred CCCHHHHHHHHH---HcCCCeEEEecCC
Confidence 357777776665 6899999998643
No 182
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=89.33 E-value=5.2 Score=43.88 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230 235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV 313 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI 313 (480)
+.+++++.++++|+|+|-|...-.. +. . ....|+.|++.. .+++|.. +-..++.++.+.++|+|.|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~------s~-~----~~~~i~~ik~~~--~~~~v~aG~V~t~~~a~~~~~aGad~I 307 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGN------SI-Y----QIDMIKKLKSNY--PHVDIIAGNVVTADQAKNLIDAGADGL 307 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCC------ch-H----HHHHHHHHHhhC--CCceEEECCcCCHHHHHHHHHcCCCEE
Confidence 3489999999999999999752111 11 1 123566677653 3688888 8999999999999999998
Q ss_pred e-cCCCC----C------CCc------hHHHHHHhcCCCEEE
Q 038230 314 N-DVSAG----Q------LDP------DMYKVVAGLKVPYVA 338 (480)
Q Consensus 314 N-dVsg~----~------~d~------~m~~l~~~~~~~vVl 338 (480)
- .+..+ + ..| +..++++++++++|.
T Consensus 308 ~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIa 349 (495)
T PTZ00314 308 RIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIA 349 (495)
T ss_pred EECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEe
Confidence 4 11111 0 012 355677788887664
No 183
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.32 E-value=1.9 Score=44.00 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEEeC--
Q 038230 220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSVDT-- 296 (480)
Q Consensus 220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISIDT-- 296 (480)
+|+.+.++| .+.+++++.++.+.+.|+|+|++.............. ...-..-.+.++.+++. .++||...-
T Consensus 216 s~~~~~~~g--~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi 290 (327)
T cd02803 216 SADDFVPGG--LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA---VKIPVIAVGGI 290 (327)
T ss_pred chhccCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH---CCCCEEEeCCC
Confidence 344344444 5789999999999999999999976432111100000 00001122345555654 366766633
Q ss_pred CCHHHHHHHHHc-CCCEEecCCCCCCCchHHHHHH
Q 038230 297 FYSKVASEAVGK-GAHIVNDVSAGQLDPDMYKVVA 330 (480)
Q Consensus 297 ~~~~v~~aaL~~-G~~iINdVsg~~~d~~m~~l~~ 330 (480)
..++.++++++. |+|+|---++.-.+|.+..-++
T Consensus 291 ~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 291 RDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred CCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 459999999998 7998875555444666655443
No 184
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.26 E-value=8.9 Score=38.83 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=71.5
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID 295 (480)
-+|| |-+.|. .|.+...++++.+++ .|++-|=++| ||.-+ ...+. +|..++.. +++..... ..+...+=
T Consensus 11 ~~TP--f~~dg~-iD~~~~~~li~~l~~~~Gv~gi~v~G-stGE~-~~Ls~-eEr~~~~~~~~~~~~~~---~~viagvg 81 (293)
T PRK04147 11 LLTP--FDEDGQ-IDEQGLRRLVRFNIEKQGIDGLYVGG-STGEA-FLLST-EEKKQVLEIVAEEAKGK---VKLIAQVG 81 (293)
T ss_pred eECc--CCCCCC-cCHHHHHHHHHHHHhcCCCCEEEECC-Ccccc-ccCCH-HHHHHHHHHHHHHhCCC---CCEEecCC
Confidence 4577 877665 789999999999999 9999999998 33332 24554 55665544 44444432 24455553
Q ss_pred CCCHH-H---HHHHHHcCCCEEecCCCCCCC---chH----HHHHHhcCCCEEEEcC
Q 038230 296 TFYSK-V---ASEAVGKGAHIVNDVSAGQLD---PDM----YKVVAGLKVPYVAMHM 341 (480)
Q Consensus 296 T~~~~-v---~~aaL~~G~~iINdVsg~~~d---~~m----~~l~~~~~~~vVlmh~ 341 (480)
+.+.+ + ++.|-+.|++-+--+...-.. +++ -.++...+.|+++-+.
T Consensus 82 ~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~ 138 (293)
T PRK04147 82 SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNI 138 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 33333 3 344455699977766543211 333 3355557889998764
No 185
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.24 E-value=2.7 Score=43.52 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCC----HHHHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFY----SKVASE 304 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~----~~v~~a 304 (480)
+.++..+.|+.+.+.|||.|++|... ..++...-+ -.+++..+++.+++. .++||.+= +.+ .+.+++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~---~~~~~~eil~~v~~~---~~iPV~vKl~p~~~~~~~~a~~ 185 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAE---VEQRYLDILRAVKSA---VSIPVAVKLSPYFSNLANMAKR 185 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCcccc---HHHHHHHHHHHHHhc---cCCcEEEEeCCCchhHHHHHHH
Confidence 45677888888889999999998632 222211111 123466778888876 47787764 211 244444
Q ss_pred HHHcCCCEE
Q 038230 305 AVGKGAHIV 313 (480)
Q Consensus 305 aL~~G~~iI 313 (480)
+.++|++-|
T Consensus 186 l~~~G~dgI 194 (334)
T PRK07565 186 LDAAGADGL 194 (334)
T ss_pred HHHcCCCeE
Confidence 445555544
No 186
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=89.14 E-value=7.5 Score=40.53 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
++.|++++.|++..+.|+.-+.+-+ ...|. .+++++..+++.|++.
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~-G~~p~-------~~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVG-GLHPN-------LPFEWYLDMIRTLKEA 124 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEec-CCCCC-------CCHHHHHHHHHHHHHH
Confidence 6999999999999999999999873 23332 2366788888888875
No 187
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.08 E-value=1.8 Score=47.13 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~~~v~~aaL~~G~~i 312 (480)
++..++++.++++|+|+|-|=. +.+. -+.+...|+.|++.+ .++||..+ -..++.++.+.++|++.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~--a~g~---------~~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~l~~~G~d~ 290 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDT--AHGH---------QVKMISAIKAVRALD--LGVPIVAGNVVSAEGVRDLLEAGANI 290 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeC--CCCC---------cHHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHHHHHhCCCE
Confidence 4567999999999999998854 3322 145667788888753 48999999 99999999999999999
Q ss_pred Ee
Q 038230 313 VN 314 (480)
Q Consensus 313 IN 314 (480)
|.
T Consensus 291 i~ 292 (475)
T TIGR01303 291 IK 292 (475)
T ss_pred EE
Confidence 97
No 188
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.02 E-value=10 Score=37.81 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=69.1
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeC
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT 296 (480)
.+|| |-+.|. .|.+...++++.+++.|++-|-++|. |.-+ ...+. +|..++...+ +..... ..+.+++=+
T Consensus 5 ~~TP--f~~dg~-iD~~~~~~~i~~l~~~Gv~gi~~~Gs-tGE~-~~ls~-~Er~~l~~~~~~~~~~~---~~vi~gv~~ 75 (281)
T cd00408 5 LVTP--FTADGE-VDLDALRRLVEFLIEAGVDGLVVLGT-TGEA-PTLTD-EERKEVIEAVVEAVAGR---VPVIAGVGA 75 (281)
T ss_pred eeCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECCC-Cccc-ccCCH-HHHHHHHHHHHHHhCCC---CeEEEecCC
Confidence 3577 766664 79999999999999999999999984 3333 23444 6666665444 333321 133344433
Q ss_pred CCHH-HHH---HHHHcCCCEEecCCCCCC---Cch----HHHHHHhcCCCEEEEcC
Q 038230 297 FYSK-VAS---EAVGKGAHIVNDVSAGQL---DPD----MYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 297 ~~~~-v~~---aaL~~G~~iINdVsg~~~---d~~----m~~l~~~~~~~vVlmh~ 341 (480)
.+.+ +++ .|-+.|++-+--+...-. +++ +..++...+.|+++-+.
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3332 333 444569997765543211 223 34455557899998765
No 189
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.00 E-value=9.5 Score=38.98 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=72.4
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
-+|| |-+.|. .|.+...+.++.++++|.|-|=++| ||.-+ ...|. +|..++...+.....- ...+...+=+.
T Consensus 12 ~vTP--F~~dg~-vD~~a~~~lv~~li~~Gv~gi~~~G-ttGE~-~~Ls~-eEr~~v~~~~v~~~~g--rvpviaG~g~~ 83 (299)
T COG0329 12 LVTP--FDEDGS-VDEEALRRLVEFLIAAGVDGLVVLG-TTGES-PTLTL-EERKEVLEAVVEAVGG--RVPVIAGVGSN 83 (299)
T ss_pred cccC--CCCCCC-cCHHHHHHHHHHHHHcCCCEEEECC-CCccc-hhcCH-HHHHHHHHHHHHHHCC--CCcEEEecCCC
Confidence 4688 886455 7999999999999999999999887 44433 34555 5555555544444432 02355556666
Q ss_pred CHHHH----HHHHHcCCCEEecCCCCCCC---ch----HHHHHHhcCCCEEEEcC
Q 038230 298 YSKVA----SEAVGKGAHIVNDVSAGQLD---PD----MYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 298 ~~~v~----~aaL~~G~~iINdVsg~~~d---~~----m~~l~~~~~~~vVlmh~ 341 (480)
+.+.+ +.|-+.|+|=|-.+.-.-.. ++ ...++...+.|+++-..
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~ 138 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI 138 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55443 33444599977766652111 22 44556667899887543
No 190
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.94 E-value=8 Score=39.50 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCC---------C----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQ---------S----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--- 297 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~e---------S----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--- 297 (480)
++..+.|++..++|+|-|+|.+. | .|...-.-+.+.-++.+..+++++++... .++||+++-.
T Consensus 141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g-~d~~i~vris~~~ 219 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG-PDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC-CCceEEEEechhc
Confidence 44556788889999999999875 2 22221123445566777888999988632 2678887544
Q ss_pred ------CHH----HHHHHHHcCCCEEe
Q 038230 298 ------YSK----VASEAVGKGAHIVN 314 (480)
Q Consensus 298 ------~~~----v~~aaL~~G~~iIN 314 (480)
.++ .++...+.|+++|.
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALH 246 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 233 34445556999996
No 191
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=88.79 E-value=4.6 Score=39.12 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G 309 (480)
+.++.|+.+.+.|| .++|+.+--+ +. ... ..+++.+.+. +++|+.++- .+.+.++.+++.|
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~--g~-~~~--------~~~i~~i~~~---~~~pi~~ggGI~~~ed~~~~~~~G 94 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE--GG-PVN--------LPVIKKIVRE---TGVPVQVGGGIRSLEDVEKLLDLG 94 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc--CC-CCc--------HHHHHHHHHh---cCCCEEEeCCcCCHHHHHHHHHcC
Confidence 35667888888888 4667765211 11 011 1234555554 367888854 6789999999999
Q ss_pred CCEEecCCCCCCC-chHHHHHHhcC-CCEEEE-cCC-CCCC--ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230 310 AHIVNDVSAGQLD-PDMYKVVAGLK-VPYVAM-HMR-GDPS--TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383 (480)
Q Consensus 310 ~~iINdVsg~~~d-~~m~~l~~~~~-~~vVlm-h~~-g~p~--~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~ 383 (480)
++.+---+....+ +.+.+++++++ -.+++. ..+ |... .-++... ....+.++.+.+.|+. .
T Consensus 95 a~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~-----------~~~~~~~~~~~~~g~~--~ 161 (230)
T TIGR00007 95 VDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSE-----------VSLEELAKRLEELGLE--G 161 (230)
T ss_pred CCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCC-----------CCHHHHHHHHHhCCCC--E
Confidence 9855322221123 45788888887 334432 211 1100 0000000 1123566677889986 5
Q ss_pred EE-Eec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 384 II-IDP---GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 384 Ii-lDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
|+ .|= |..++ .++++++++ +..+.|++.|
T Consensus 162 ii~~~~~~~g~~~g----~~~~~i~~i~~~~~ipvia~ 195 (230)
T TIGR00007 162 IIYTDISRDGTLSG----PNFELTKELVKAVNVPVIAS 195 (230)
T ss_pred EEEEeecCCCCcCC----CCHHHHHHHHHhCCCCEEEe
Confidence 55 333 22223 357777777 3478898875
No 192
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=88.61 E-value=26 Score=34.80 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQ 256 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~e 256 (480)
.+.+++++ ...+.|-+-|+++..
T Consensus 16 ~~~~e~l~---~~~~~G~~~VEl~~~ 38 (279)
T TIGR00542 16 ECWLERLQ---LAKTCGFDFVEMSVD 38 (279)
T ss_pred CCHHHHHH---HHHHcCCCEEEEecC
Confidence 34555554 445789999999753
No 193
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.52 E-value=22 Score=33.69 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=65.2
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
..++.|+... +.+++++.++.+++.|+++|-+=.-+ +. ...+...++.+++....-..
T Consensus 12 ~~~~~v~r~~-----------~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~---------~~e~~~~~~~~~~~~~~g~g 69 (187)
T PRK07455 12 HRAIAVIRAP-----------DLELGLQMAEAVAAGGMRLIEITWNS--DQ---------PAELISQLREKLPECIIGTG 69 (187)
T ss_pred CCEEEEEEcC-----------CHHHHHHHHHHHHHCCCCEEEEeCCC--CC---------HHHHHHHHHHhCCCcEEeEE
Confidence 5678887766 57899999999999999999996421 11 12222333444432100011
Q ss_pred eEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 291 LVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 291 pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
++ ...+-++.|+++|++.+ +++. .+++..++++.++.++++
T Consensus 70 tv----l~~d~~~~A~~~gAdgv--~~p~-~~~~~~~~~~~~~~~~i~ 110 (187)
T PRK07455 70 TI----LTLEDLEEAIAAGAQFC--FTPH-VDPELIEAAVAQDIPIIP 110 (187)
T ss_pred EE----EcHHHHHHHHHcCCCEE--ECCC-CCHHHHHHHHHcCCCEEc
Confidence 11 23378889999999998 4444 368899999999987653
No 194
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.49 E-value=10 Score=38.29 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=70.0
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEe
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISE-GADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~-GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISID 295 (480)
.+|| |-+.|. .|.+...+.++.+++. |++-|=++| ||.-+ ...+ .+|..++.. +++..... ..+.+.+-
T Consensus 8 ~~TP--f~~dg~-iD~~~~~~~i~~l~~~~Gv~gi~~~G-stGE~-~~Lt-~~Er~~~~~~~~~~~~~~---~~viagv~ 78 (288)
T cd00954 8 LLTP--FDENGE-INEDVLRAIVDYLIEKQGVDGLYVNG-STGEG-FLLS-VEERKQIAEIVAEAAKGK---VTLIAHVG 78 (288)
T ss_pred eECC--CCCCCC-CCHHHHHHHHHHHHhcCCCCEEEECc-CCcCc-ccCC-HHHHHHHHHHHHHHhCCC---CeEEeccC
Confidence 3577 776665 7999999999999999 999999998 44433 3445 466666654 44444322 13334453
Q ss_pred CCC-HHHHH---HHHHcCCCEEecCCCCCC---CchH----HHHHHhc-CCCEEEEcC
Q 038230 296 TFY-SKVAS---EAVGKGAHIVNDVSAGQL---DPDM----YKVVAGL-KVPYVAMHM 341 (480)
Q Consensus 296 T~~-~~v~~---aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~-~~~vVlmh~ 341 (480)
+.+ .++++ .|.+.|++-+--+...-. ++++ -.++... +.|+++-+.
T Consensus 79 ~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 79 SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 333 33443 445569998765443211 2333 3344556 789998654
No 195
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=88.38 E-value=6.6 Score=40.57 Aligned_cols=80 Identities=25% Similarity=0.246 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--- 297 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--- 297 (480)
++..+.|++..++|.|.|+|++.- .|...-.-+.+.-++.+..+++++++... .+.||+|+-.
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v~vri~~~~ 232 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEEcccc
Confidence 344567888899999999998631 22111133566778888899999998742 2789999733
Q ss_pred ------CHHHHHH----HHHcCCCEEe
Q 038230 298 ------YSKVASE----AVGKGAHIVN 314 (480)
Q Consensus 298 ------~~~v~~a----aL~~G~~iIN 314 (480)
.++.+.+ .-+.|+++|.
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~ie 259 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLID 259 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3433322 2335999998
No 196
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=88.34 E-value=4 Score=42.14 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID 295 (480)
+.++..+.|+.+.+.|||.|++|..+ .+|+....+. -+++..+++.+++. .++||.+=
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~---~~~~~eiv~~v~~~---~~iPv~vK 169 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEV---EQRYLDILRAVKSA---VTIPVAVK 169 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchH---HHHHHHHHHHHHhc---cCCCEEEE
Confidence 45677788888888899999999843 2333221111 24677788888876 36777664
No 197
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=88.33 E-value=7 Score=40.34 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
..+++++++.++++.+.|+.-|-+.+. ..|. .+.+++..+++.|++.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG-~~p~-------~~~~~~~~li~~Ik~~ 117 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGG-VNPD-------LGLDYYEDLFRAIKAR 117 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecC-CCCC-------CCHHHHHHHHHHHHHH
Confidence 479999999999999999999988532 2332 2356677778888764
No 198
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=88.33 E-value=4.4 Score=39.91 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHHHHHHHH-cCC---CEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHc
Q 038230 236 AVSQVRLMIS-EGA---DMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGK 308 (480)
Q Consensus 236 a~~~A~~~v~-~GA---diIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~ 308 (480)
.++.|+.+.+ .|| +|+|+.+-. .++ .-..+|+.|.+. +++||.++ -++.+.++..+++
T Consensus 33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~------------~n~~~I~~i~~~---~~~pi~vGGGIrs~e~v~~~l~~ 97 (234)
T PRK13587 33 AEESIAYYSQFECVNRIHIVDLIGAKAQHA------------REFDYIKSLRRL---TTKDIEVGGGIRTKSQIMDYFAA 97 (234)
T ss_pred HHHHHHHHHhccCCCEEEEEECcccccCCc------------chHHHHHHHHhh---cCCeEEEcCCcCCHHHHHHHHHC
Confidence 3447888888 686 678997632 111 123456666665 47899996 5899999999999
Q ss_pred CCCE--EecCCCCCCCch-HHHHHHhcCCCEEEE-cC-CCCCCc--cccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 309 GAHI--VNDVSAGQLDPD-MYKVVAGLKVPYVAM-HM-RGDPST--MQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 309 G~~i--INdVsg~~~d~~-m~~l~~~~~~~vVlm-h~-~g~p~~--~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
|++- ||+.. .+ +++ +-+++++|+-.+|+. .. .|...+ -.+.. ...+.+.++.+.+.|+.
T Consensus 98 Ga~kvvigt~a-~~-~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~-----------~~~~~~~~~~~~~~g~~- 163 (234)
T PRK13587 98 GINYCIVGTKG-IQ-DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDT-----------ELNLFSFVRQLSDIPLG- 163 (234)
T ss_pred CCCEEEECchH-hc-CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccC-----------CCCHHHHHHHHHHcCCC-
Confidence 9874 44443 22 555 555777786555543 32 231111 00101 01235666777788886
Q ss_pred CCEE-Eec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 382 WRII-IDP---GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 382 ~~Ii-lDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.|| -|- |.+-|. |+++++++ +..+.|+.++
T Consensus 164 -~ii~tdi~~dGt~~G~----~~~li~~l~~~~~ipvi~~ 198 (234)
T PRK13587 164 -GIIYTDIAKDGKMSGP----NFELTGQLVKATTIPVIAS 198 (234)
T ss_pred -EEEEecccCcCCCCcc----CHHHHHHHHHhCCCCEEEe
Confidence 444 444 333333 46667766 3468999875
No 199
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.20 E-value=20 Score=36.51 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC---HHHHHHHHH-
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY---SKVASEAVG- 307 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~---~~v~~aaL~- 307 (480)
++++.++.++++.+.|-+.+.|.... +.++++++ |+++++... +++|++|... .+.+.+.++
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~--------~~~~d~~~----v~~lr~~~g--~~~l~vD~n~~~~~~~A~~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGG--------DLEDDIER----IRAIREAAP--DARLRVDANQGWTPEEAVELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCC--------ChhhHHHH----HHHHHHhCC--CCeEEEeCCCCcCHHHHHHHHHH
Confidence 67889999999999999999987521 12344444 566666542 5789999854 444333322
Q ss_pred ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
.|..+|-+-......+.+.++.+..++|++.--+- .+ ..+..+.+...+++ =+
T Consensus 200 l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~---~~-------------------~~~~~~~~~~~~~d--~v 255 (316)
T cd03319 200 LAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESC---FS-------------------AADAARLAGGGAYD--GI 255 (316)
T ss_pred HHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCC---CC-------------------HHHHHHHHhcCCCC--EE
Confidence 38888876543221256777777788887762221 00 01111222345554 68
Q ss_pred EEecCC--CCccChhHHHHHHHhcccCCCcEEEe
Q 038230 385 IIDPGL--GFSKKAEHNLDILLGLAASHAPILIG 416 (480)
Q Consensus 385 ilDPgi--Gf~k~~~~~~~~lr~l~~~g~Pil~G 416 (480)
.+||.. |+.+ ..++.+..+..|+++.+|
T Consensus 256 ~~~~~~~GGi~~----~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 256 NIKLMKTGGLTE----ALRIADLARAAGLKVMVG 285 (316)
T ss_pred EEeccccCCHHH----HHHHHHHHHHcCCCEEEE
Confidence 899854 2322 233444335579999887
No 200
>PRK12928 lipoyl synthase; Provisional
Probab=88.18 E-value=7.8 Score=39.50 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----CHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----YSKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----~~~v~~a 304 (480)
..+++++++.|++..+.|+..|-|-+.. ++. . .+...+++..+++.|++.. .++.|.+=|. ..++++.
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~-~dD---l-~d~g~~~~~ell~~Ik~~~--p~~~I~~ltp~~~~~~~e~L~~ 158 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVA-RDD---L-PDGGAAHFVATIAAIRARN--PGTGIEVLTPDFWGGQRERLAT 158 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEe-CCc---c-cccCHHHHHHHHHHHHhcC--CCCEEEEeccccccCCHHHHHH
Confidence 3689999999999999999988885432 211 0 0122456777788887753 2344444333 2355666
Q ss_pred HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC--CCCC
Q 038230 305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG--IPAW 382 (480)
Q Consensus 305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G--i~~~ 382 (480)
..++|++++|=- -+. .+++++.+.. ...| +...+.++.+.+.| +.
T Consensus 159 l~~Ag~~i~~hn-lEt-~~~vl~~m~r---------------------~~t~--------e~~le~l~~ak~~gp~i~-- 205 (290)
T PRK12928 159 VLAAKPDVFNHN-LET-VPRLQKAVRR---------------------GADY--------QRSLDLLARAKELAPDIP-- 205 (290)
T ss_pred HHHcCchhhccc-CcC-cHHHHHHhCC---------------------CCCH--------HHHHHHHHHHHHhCCCce--
Confidence 666676666521 111 1333332211 0112 23356777888888 64
Q ss_pred CEEEecCCCCccChhHHHHHHHhcccCCC
Q 038230 383 RIIIDPGLGFSKKAEHNLDILLGLAASHA 411 (480)
Q Consensus 383 ~IilDPgiGf~k~~~~~~~~lr~l~~~g~ 411 (480)
+--|=.+||+.+.++-.++++.++..++
T Consensus 206 -~~s~iIvG~GET~ed~~etl~~Lrel~~ 233 (290)
T PRK12928 206 -TKSGLMLGLGETEDEVIETLRDLRAVGC 233 (290)
T ss_pred -ecccEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 4445556888888887777777644443
No 201
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.16 E-value=2.4 Score=45.30 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCEE
Q 038230 235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHIV 313 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~iI 313 (480)
+..++++.++++|||+|-|= +|.+.. ..+...++.+++.. .+++|.. |-..++.++.++++|+|.|
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD--~a~g~~---------~~~~~~v~~ik~~~--p~~~vi~g~V~T~e~a~~l~~aGaD~I 219 (404)
T PRK06843 153 DTIERVEELVKAHVDILVID--SAHGHS---------TRIIELVKKIKTKY--PNLDLIAGNIVTKEAALDLISVGADCL 219 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEE--CCCCCC---------hhHHHHHHHHHhhC--CCCcEEEEecCCHHHHHHHHHcCCCEE
Confidence 46789999999999999883 444432 13445567777653 3676756 9999999999999999998
Q ss_pred e
Q 038230 314 N 314 (480)
Q Consensus 314 N 314 (480)
-
T Consensus 220 ~ 220 (404)
T PRK06843 220 K 220 (404)
T ss_pred E
Confidence 6
No 202
>PRK04326 methionine synthase; Provisional
Probab=87.83 E-value=19 Score=36.94 Aligned_cols=148 Identities=11% Similarity=0.185 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--C-HHHHHHHHHcCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF--Y-SKVASEAVGKGA 310 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~-~~v~~aaL~~G~ 310 (480)
+...+.++.+.+.||++|=|-= |.... ++ ++++...++++.+.+.. +..+.+-+. + ....+.-++.|+
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidE----P~l~~-~~-~~~~~~~~~l~~~~~~~---~~~v~lH~C~G~~~~~~~~l~~~~v 231 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDE----PALAT-HP-EDVEIAVEALNRIVKGI---NAKLGLHVCYGDYSRIAPYILEFPV 231 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecC----chhhc-CH-HHHHHHHHHHHHHHhCC---CCEEEEEEeCCCcHHHHHHHHhCCC
Confidence 3455667888899999988863 32211 22 56788888888887653 445554443 3 334555566788
Q ss_pred CEEecCCCCCCCchHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
+.+. +.......+-+..++++ +-.+++ -.- .++++.. ++ . +.+.++++.+.+ +++.+++++-|
T Consensus 232 d~i~-~d~~~~~~~~l~~~~~~~~~~~l~~-Gvv-~~~~~~~------~~-~----e~v~~~v~~~~~-~~~~~~~~lsp 296 (330)
T PRK04326 232 DQFD-LEFANGNYKLLDLLKEYGFDKELGL-GVI-DVHSARV------ES-V----EEIKEAIKKGLE-YVPPEKLYINP 296 (330)
T ss_pred CEEE-EEeCCCCchhHHHhhccCCCCeEEe-EEE-eCCCCCC------CC-H----HHHHHHHHHHHH-hCChhhEEECC
Confidence 8775 32211122355666666 433332 110 1122111 11 1 334566667766 67778999999
Q ss_pred CCCCccC----hhHHHHHHHh
Q 038230 389 GLGFSKK----AEHNLDILLG 405 (480)
Q Consensus 389 giGf~k~----~~~~~~~lr~ 405 (480)
+-||+.. ..++++.+.+
T Consensus 297 ~Cgl~~~~~~~a~~kl~~l~~ 317 (330)
T PRK04326 297 DCGLKLLPREIAYQKLVNMVK 317 (330)
T ss_pred CCCCCcCCHHHHHHHHHHHHH
Confidence 9888643 2344554444
No 203
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.79 E-value=2.7 Score=43.76 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC
Q 038230 220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF 297 (480)
Q Consensus 220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~ 297 (480)
+++-+-.|| .+.++.++.++.+.+.|+|+|+|-+.+..+......+. . ..+..+.+++. .++||.. +=.
T Consensus 215 s~~d~~~~G--~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~--~--~~~~~~~ik~~---~~ipVi~~G~i~ 285 (337)
T PRK13523 215 SASDYHPGG--LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG--Y--QVPFAEHIREH---ANIATGAVGLIT 285 (337)
T ss_pred cccccCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc--c--cHHHHHHHHhh---cCCcEEEeCCCC
Confidence 344444555 46899999999999999999999765422211111110 0 22345566655 3667543 335
Q ss_pred CHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230 298 YSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 298 ~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~ 331 (480)
.++.++++|+.| +|+|-=-.+.-.||++..-+++
T Consensus 286 ~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 286 SGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred CHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHH
Confidence 799999999986 8888644444456776655554
No 204
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=87.75 E-value=16 Score=37.58 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASEA 305 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~aa 305 (480)
..+++++++.|+...+.|+.-|-|=+.- ++... +.....+..+|+.|++.. .++.|.+-+.+ .+.++.-
T Consensus 90 ~~~~eei~~~a~~~~~~GlkevvLTsv~-~ddl~----d~g~~~l~~li~~I~~~~--p~i~Ievl~~d~~g~~e~l~~l 162 (302)
T TIGR00510 90 PPDPEEPAKLAETIKDMGLKYVVITSVD-RDDLE----DGGASHLAECIEAIREKL--PNIKIETLVPDFRGNIAALDIL 162 (302)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeec-CCCcc----cccHHHHHHHHHHHHhcC--CCCEEEEeCCcccCCHHHHHHH
Confidence 3578999999999999999988776432 22111 123456788888888753 25556665543 3344444
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCCC
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAWR 383 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~~ 383 (480)
.++|.+++|-- -+. -+.+++-+ + ....| +...+.++.+.+. |+.
T Consensus 163 ~~aG~dv~~hn-lEt-~~~l~~~v------------r---------r~~t~--------e~~Le~l~~ak~~~pgi~--- 208 (302)
T TIGR00510 163 LDAPPDVYNHN-LET-VERLTPFV------------R---------PGATY--------RWSLKLLERAKEYLPNLP--- 208 (302)
T ss_pred HHcCchhhccc-ccc-hHHHHHHh------------C---------CCCCH--------HHHHHHHHHHHHhCCCCe---
Confidence 55566655521 111 12222221 0 01122 2334666677766 553
Q ss_pred EEEecCCCCccChhHHHHHHHhcccCCCcE
Q 038230 384 IIIDPGLGFSKKAEHNLDILLGLAASHAPI 413 (480)
Q Consensus 384 IilDPgiGf~k~~~~~~~~lr~l~~~g~Pi 413 (480)
+--|=.+|||.+.++-.++++.++..++-.
T Consensus 209 ~~TgiIVGlGETeee~~etl~~Lrelg~d~ 238 (302)
T TIGR00510 209 TKSGIMVGLGETNEEIKQTLKDLRDHGVTM 238 (302)
T ss_pred ecceEEEECCCCHHHHHHHHHHHHhcCCCE
Confidence 444555688999887777777765455443
No 205
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.69 E-value=3.2 Score=43.00 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=66.8
Q ss_pred EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC---C-CH-HHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 217 LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATK---I-SA-EKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 217 lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~---v-~~-~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
+|. +-|.++| .+.+++++.++.+.+.|+|+|.|-+..-.+.... . +. ..+ ....+..+.|++. .++|
T Consensus 223 is~--~~~~~~g--~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ik~~---v~iP 294 (338)
T cd04733 223 LNS--ADFQRGG--FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE-AYFLEFAEKIRKV---TKTP 294 (338)
T ss_pred EcH--HHcCCCC--CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc-hhhHHHHHHHHHH---cCCC
Confidence 553 3355665 4789999999999999999999875432111100 0 00 001 1112344556665 3788
Q ss_pred EEEeCC--CHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHH
Q 038230 292 VSVDTF--YSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVA 330 (480)
Q Consensus 292 ISIDT~--~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~ 330 (480)
|..+.. .++.++++++.| +|+|.--.+.-.||.+..-++
T Consensus 295 Vi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~ 336 (338)
T cd04733 295 LMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence 877654 589999999986 899986666555677665544
No 206
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=87.65 E-value=32 Score=34.39 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=41.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCCCHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMI---DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTFYSKVAS 303 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiI---DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~~~~v~~ 303 (480)
++.+++++++.++++.+.|+.-+ +.|.+ |. ...-.+.+..+.+.+++. ++. +++...+++.++
T Consensus 60 ~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~---~~-----~~~~~~~~~~i~~~~~~~----~i~~~~~~g~~~~e~l~ 127 (296)
T TIGR00433 60 RLKKVDEVLEEARKAKAAGATRFCLVASGRG---PK-----DREFMEYVEAMVQIVEEM----GLKTCATLGLLDPEQAK 127 (296)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEEEecCC---CC-----hHHHHHHHHHHHHHHHhC----CCeEEecCCCCCHHHHH
Confidence 55789999999999999998654 33332 21 112133444444444432 443 333445666666
Q ss_pred HHHHcCCCEE
Q 038230 304 EAVGKGAHIV 313 (480)
Q Consensus 304 aaL~~G~~iI 313 (480)
..-++|++.+
T Consensus 128 ~Lk~aG~~~v 137 (296)
T TIGR00433 128 RLKDAGLDYY 137 (296)
T ss_pred HHHHcCCCEE
Confidence 6666666654
No 207
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=87.65 E-value=1.6 Score=45.08 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS 303 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~ 303 (480)
.+++...+.|+...+.|+|+||||+.=--| |+.. -.+.+++..+|+++++..+ ++|||+=++
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~L---l~~p~lv~~iv~a~~~av~--~iPVTVKiR------ 144 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAAL---LKNPELLAEIVKAMVEAVG--DIPVTVKIR------ 144 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhh---cCCHHHHHHHHHHHHHhhC--CCCeEEEEe------
Confidence 467888888999999999999999631111 2221 2467788888999998731 489988543
Q ss_pred HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230 304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~ 342 (480)
.|.+--. ....+++..+.+.|+..+.+|-+
T Consensus 145 ----lG~d~~~-----~~~~~ia~~~~~~g~~~ltVHgR 174 (323)
T COG0042 145 ----LGWDDDD-----ILALEIARILEDAGADALTVHGR 174 (323)
T ss_pred ----cccCccc-----ccHHHHHHHHHhcCCCEEEEecc
Confidence 1221111 01245677777777777777754
No 208
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.65 E-value=4.5 Score=44.15 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
++..++++.++++|+++|-|=. +.++ -..+...|+.|++.+ .+++|.- |.-.++.+++++++|+|.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~-a~~~----------~~~~~~~i~~ik~~~--p~~~v~agnv~t~~~a~~l~~aGad~ 292 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDT-AHGH----------QEKMLEALRAVRALD--PGVPIVAGNVVTAEGTRDLVEAGADI 292 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEec-cCCc----------cHHHHHHHHHHHHHC--CCCeEEeeccCCHHHHHHHHHcCCCE
Confidence 4567899999999999987753 2222 235666788888764 4788888 999999999999999999
Q ss_pred Ee----c--------CCCCCCCc------hHHHHHHhcCCCEEE
Q 038230 313 VN----D--------VSAGQLDP------DMYKVVAGLKVPYVA 338 (480)
Q Consensus 313 IN----d--------Vsg~~~d~------~m~~l~~~~~~~vVl 338 (480)
|- . ++|.. .| +..+.+++++++||.
T Consensus 293 v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~via 335 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAHVWA 335 (479)
T ss_pred EEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCcEEe
Confidence 97 3 11111 12 345555578888885
No 209
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=87.58 E-value=21 Score=36.73 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC--CCCe-E--EEeCCCHHHHHHHHHc
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM--EGKL-V--SVDTFYSKVASEAVGK 308 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~--~~~p-I--SIDT~~~~v~~aaL~~ 308 (480)
+..++.++.|++.|||+|=|. ++ -+..+|+++=.+-+.|.++.+.+..+. .+.+ + |=||. ...+.-.+.
T Consensus 180 ~~~~~~~~~~~eaGad~i~i~-d~---~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~~~--~~~~~~~~~ 253 (338)
T TIGR01464 180 DATIEYLVEQVKAGAQAVQIF-DS---WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKGAG--HLLEELAET 253 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEE-CC---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCcH--HHHHHHHhc
Confidence 345677888999999998775 33 235688765444444544444432110 1333 3 23543 455555556
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
|+++++ +.. ...+.+..+.++-.+++|-+- .|..+.. . -+++.+...+.++.+. ....-|+=|
T Consensus 254 ~~~~~s-~d~---~~dl~e~~~~~~~~~~i~Gni-~p~~l~g----t----~e~i~~~v~~~l~~~~----~~~g~Il~~ 316 (338)
T TIGR01464 254 GADVVG-LDW---TVDLKEARKRVGPGVAIQGNL-DPAVLYA----P----EEALEEKVEKILEAFG----GKSRYIFNL 316 (338)
T ss_pred CCCEEE-eCC---CCCHHHHHHHhCCCeeEEeCC-ChHHhcC----C----HHHHHHHHHHHHHHhc----cCCCceecC
Confidence 998884 332 235666667777677776543 2332211 1 1334444444444432 223569999
Q ss_pred CCCCc-cChhHHHHHHHh
Q 038230 389 GLGFS-KKAEHNLDILLG 405 (480)
Q Consensus 389 giGf~-k~~~~~~~~lr~ 405 (480)
|-|.. .+..+|++.+-+
T Consensus 317 Gc~i~~~tp~eni~a~v~ 334 (338)
T TIGR01464 317 GHGILPDTPPENVKALVE 334 (338)
T ss_pred CCcCCCCcCHHHHHHHHH
Confidence 99874 677788776543
No 210
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=87.58 E-value=12 Score=36.81 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G 309 (480)
+.++.|+.+.+.|| +++|+.+...++ .-..+|+.+.+. .++|+.++ -.+.+-++..+..|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~------------~n~~~i~~i~~~---~~~pv~vgGGirs~edv~~~l~~G 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG------------SNRELLAEVVGK---LDVKVELSGGIRDDESLEAALATG 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCC------------ccHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHCC
Confidence 45678899999999 477886531111 122567777765 47899997 47889999999999
Q ss_pred CCEEecCCCCCCCch-HHHHHHhcCCCEEE-EcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 310 AHIVNDVSAGQLDPD-MYKVVAGLKVPYVA-MHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 310 ~~iINdVsg~~~d~~-m~~l~~~~~~~vVl-mh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
++-+.-=+..-.+++ +.+++++++-.+++ +..+ +...+. .|.+ -...+.+.++.+.+.|+. .|++
T Consensus 98 a~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~------Gw~~----~~~~~~~~~~~l~~~G~~--~iiv 165 (241)
T PRK14024 98 CARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR------GWTR----DGGDLWEVLERLDSAGCS--RYVV 165 (241)
T ss_pred CCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC------Ceee----cCccHHHHHHHHHhcCCC--EEEE
Confidence 986542222223554 55667777655544 2221 222110 0111 002344666777899997 5665
Q ss_pred ecC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 387 DPG--LGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 387 DPg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
=.- -|..+. .++++++++ +..+.|++.+
T Consensus 166 ~~~~~~g~~~G--~d~~~i~~i~~~~~ipvias 196 (241)
T PRK14024 166 TDVTKDGTLTG--PNLELLREVCARTDAPVVAS 196 (241)
T ss_pred EeecCCCCccC--CCHHHHHHHHhhCCCCEEEe
Confidence 441 122222 257778877 3468999864
No 211
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=87.56 E-value=12 Score=36.90 Aligned_cols=176 Identities=18% Similarity=0.248 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EE
Q 038230 236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IV 313 (480)
Q Consensus 236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iI 313 (480)
..+.+++..+.|+|.|=||| |+ .++. +.+.++++.+++. .+|+-+-=.+++.+.. ++| ++
T Consensus 16 ~~~~~~~~~~~gtdai~vGG-S~-----~vt~----~~~~~~v~~ik~~----~lPvilfp~~~~~i~~----~aDa~l~ 77 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGG-SQ-----GVTY----EKTDTLIEALRRY----GLPIILFPSNPTNVSR----DADALFF 77 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcC-CC-----cccH----HHHHHHHHHHhcc----CCCEEEeCCCccccCc----CCCEEEE
Confidence 45688899999999999997 32 2332 2556677788865 5899886666665543 344 44
Q ss_pred ecCCCCCCCc--------hHHHHHHhcCC-----CEEEEcCCCCCCcccc-ccc-cchhhHHHHHHHHHHHHHHHHH-HC
Q 038230 314 NDVSAGQLDP--------DMYKVVAGLKV-----PYVAMHMRGDPSTMQN-EEN-LQYDDVCKQVASELYSKVRDAE-LS 377 (480)
Q Consensus 314 NdVsg~~~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~~~~-~~~-~~~~~v~~ev~~~l~~~i~~a~-~~ 377 (480)
.++-... ++ +-++..++++- +|+++...+.-....+ .+. ...+++ ..-...|. =.
T Consensus 78 ~svlNs~-~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~--------aa~~~lA~~~~ 148 (223)
T TIGR01768 78 PSVLNSD-DPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDL--------AAYAAMAEEML 148 (223)
T ss_pred EEeecCC-CchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHH--------HHHHHHHHHHc
Confidence 4433222 33 23455555553 5666654332111100 000 111221 12223333 36
Q ss_pred CCCCCCEEEecCCCCccChhHHHHHHHhc-ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230 378 GIPAWRIIIDPGLGFSKKAEHNLDILLGL-AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR 455 (480)
Q Consensus 378 Gi~~~~IilDPgiGf~k~~~~~~~~lr~l-~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR 455 (480)
|.+ =++++=|-|+++.. |.++++++ +.. +.|+.+|- |- |....+ ..+...||+.+-
T Consensus 149 g~~--~vYlE~gs~~g~~v--~~e~i~~v~~~~~~~pl~vGG----------GI-----rs~e~a---~~l~~aGAD~VV 206 (223)
T TIGR01768 149 GMP--IIYLEAGSGAPEPV--PPELVAEVKKVLDKARLFVGG----------GI-----RSVEKA---REMAEAGADTIV 206 (223)
T ss_pred CCc--EEEEEecCCCCCCc--CHHHHHHHHHHcCCCCEEEec----------CC-----CCHHHH---HHHHHcCCCEEE
Confidence 776 79999988887653 23445554 234 89999983 22 222232 234566999988
Q ss_pred cCChH
Q 038230 456 VHNIR 460 (480)
Q Consensus 456 vHdV~ 460 (480)
+=++.
T Consensus 207 VGs~~ 211 (223)
T TIGR01768 207 TGNVI 211 (223)
T ss_pred ECcHH
Confidence 87754
No 212
>PRK08444 hypothetical protein; Provisional
Probab=87.53 E-value=7.4 Score=40.79 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=47.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~~~~v~~aaL 306 (480)
..++.|+++++|++..+.|++-+-|-+ +.+|.. +++.+..+++.|++. .| +.|..+.+..+...-
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~-G~~p~~-------~~e~y~e~ir~Ik~~-----~p~i~i~a~s~~Ei~~~a 143 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVS-AHNPNY-------GYEWYLEIFKKIKEA-----YPNLHVKAMTAAEVDFLS 143 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEec-cCCCCC-------CHHHHHHHHHHHHHH-----CCCceEeeCCHHHHHHHH
Confidence 347999999999999999999888864 244432 466778888888864 33 777777776665444
No 213
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=87.17 E-value=11 Score=36.95 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G 309 (480)
+.++.|+.+.+.|| +++|+.+.. +.+ .-..+|+.+.+. .++|+.++ -.+.+-+++.++.|
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~---~~~---------~n~~~i~~i~~~---~~~~v~vgGGir~~edv~~~l~~G 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIM---GRG---------DNDEAIRELAAA---WPLGLWVDGGIRSLENAQEWLKRG 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcccc---CCC---------ccHHHHHHHHHh---CCCCEEEecCcCCHHHHHHHHHcC
Confidence 57789999999999 578987531 111 113456666654 36777776 47889999999999
Q ss_pred CC--EEecCCCCCCCchHHHHHHhcCC-CEEE-EcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 310 AH--IVNDVSAGQLDPDMYKVVAGLKV-PYVA-MHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 310 ~~--iINdVsg~~~d~~m~~l~~~~~~-~vVl-mh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
++ +||+.. .+ ++-+.+++++|+- .+|+ +..+ |.-. ..... ..+.+.++.+.+. . .+=+
T Consensus 101 a~~viigt~~-~~-~~~~~~~~~~~~~~~iivslD~~~~~~~--~~~~~-----------~~~~~~~~~~~~~-~-~~li 163 (233)
T cd04723 101 ASRVIVGTET-LP-SDDDEDRLAALGEQRLVLSLDFRGGQLL--KPTDF-----------IGPEELLRRLAKW-P-EELI 163 (233)
T ss_pred CCeEEEccee-cc-chHHHHHHHhcCCCCeEEEEeccCCeec--cccCc-----------CCHHHHHHHHHHh-C-CeEE
Confidence 77 556554 33 3456777788875 4443 3433 2111 00000 1123444444444 3 3457
Q ss_pred EEecC-CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 385 IIDPG-LGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 385 ilDPg-iGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
+.|-. -|..+ ..++++++++ +..+.|+.+|
T Consensus 164 ~~di~~~G~~~--g~~~~~~~~i~~~~~ipvi~~ 195 (233)
T cd04723 164 VLDIDRVGSGQ--GPDLELLERLAARADIPVIAA 195 (233)
T ss_pred EEEcCccccCC--CcCHHHHHHHHHhcCCCEEEe
Confidence 88872 22221 2346667776 4568899886
No 214
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=86.86 E-value=27 Score=36.16 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC--CCe-EEEeCCCHHHHHHHHHcCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME--GKL-VSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~--~~p-ISIDT~~~~v~~aaL~~G~ 310 (480)
+..++.++.|+++|||+|=++ ++ .+..+|++.=-+-+.|-++.|.+..+.. +.+ +-+.--....++.-.+.|+
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~-d~---~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~ 261 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIF-DS---WAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGA 261 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cC---ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCC
Confidence 345677888999999999664 43 3346777553333344444443321111 233 3233322234555445699
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL 390 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi 390 (480)
+.++ +.. ...+.+....++-.+++|-+- .| .+-. .. -+++.+...+.++.+ ....-|+=||-
T Consensus 262 ~~is-~d~---~~dl~~~k~~~g~~~~i~Gni-~p-~ll~------gt-~e~i~~~~~~~i~~~-----~~~gfIl~~Gc 323 (346)
T PRK00115 262 DVVG-LDW---TVDLAEARRRVGDKKALQGNL-DP-AVLL------AP-PEAIEEEVRAILDGG-----GGPGHIFNLGH 323 (346)
T ss_pred CEEe-eCC---CCCHHHHHHHcCCCeEEEeCC-Ch-hHhc------CC-HHHHHHHHHHHHHHh-----CCCCeeeecCC
Confidence 8875 321 235666666677667776542 22 2111 11 234444444555544 22358999999
Q ss_pred CCc-cChhHHHHHHHh
Q 038230 391 GFS-KKAEHNLDILLG 405 (480)
Q Consensus 391 Gf~-k~~~~~~~~lr~ 405 (480)
|.. .+..+|++.+-+
T Consensus 324 ~i~~~tp~eNi~a~v~ 339 (346)
T PRK00115 324 GILPETPPENVKALVE 339 (346)
T ss_pred cCCCCcCHHHHHHHHH
Confidence 874 666777766543
No 215
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=86.70 E-value=33 Score=36.06 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCCC--CCCCC----------CHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTRP--MATKI----------SAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStrP--~a~~v----------~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|++.+++.|+++.+.|+. ++=+|++.-|. +.... +.++=+.....++..+.+. ++|
T Consensus 65 ~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~----Glp 140 (353)
T PRK12755 65 HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVEL----GLP 140 (353)
T ss_pred CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHh----CCC
Confidence 4688999999999999887 77888876443 22222 1134455555555555554 888
Q ss_pred EEEeCCCHHHHHHHHHc------CCC-------------------EEecCCCCCCCchHHHHH------------HhcCC
Q 038230 292 VSVDTFYSKVASEAVGK------GAH-------------------IVNDVSAGQLDPDMYKVV------------AGLKV 334 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~------G~~-------------------iINdVsg~~~d~~m~~l~------------~~~~~ 334 (480)
+.-+-.+|...+...+. ||. +-|..+|. -..++..+ .++|.
T Consensus 141 ~atE~ld~~~~~y~~Dlvs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~--i~~al~Ai~aa~~~H~fl~~~~~G~ 218 (353)
T PRK12755 141 LATEALDPISPQYLGDLISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGS--LKVAINAIRAAAQPHRFLGINQEGQ 218 (353)
T ss_pred EEEEecCcccHHHHHhhhhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCC--HHHHHHHHHHHhCCCeeeeeCCCCc
Confidence 87655555554444432 332 23333321 12233332 13444
Q ss_pred CEEEEcCCCCCCcc------ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc-
Q 038230 335 PYVAMHMRGDPSTM------QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL- 406 (480)
Q Consensus 335 ~vVlmh~~g~p~~~------~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l- 406 (480)
..|+ ++.|.|.+- ...++|.+ +.+......+.+.|++ .+|++||..|- .|....-..+.+.+
T Consensus 219 ~~iv-~t~GN~~~hliLRGg~~~pNy~~--------~~i~~a~~~l~k~~l~-~~vmVD~SH~Ns~K~~~~Q~~V~~~v~ 288 (353)
T PRK12755 219 VALL-ETRGNPDGHVILRGGKKGPNYDA--------ASVAACEAQLEKAGLR-PRLMIDCSHANSGKDYRRQPAVAEDVV 288 (353)
T ss_pred EEEE-ECCCCCCEEEEeCCCCCCCCCCH--------HHHHHHHHHHHHcCCC-CcEEecCCccccccchhhhHHHHHHHH
Confidence 4444 445666432 12344443 3445666777888997 78999999885 55554333333333
Q ss_pred --ccCCCcEEEeeccccccc
Q 038230 407 --AASHAPILIGPSRKRFLG 424 (480)
Q Consensus 407 --~~~g~Pil~G~SrKsfi~ 424 (480)
..-|-.-+.|+==.||+.
T Consensus 289 ~qi~~G~~~I~GvMiES~l~ 308 (353)
T PRK12755 289 AQIAAGNRSIIGVMIESHLE 308 (353)
T ss_pred HHHHcCCCceEEEEEEEecc
Confidence 112333366776666653
No 216
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.65 E-value=5.8 Score=38.28 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230 238 SQVRLMISEGADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN 314 (480)
+++++..+.|||+|=+.+... .|. .++.. .+++.+++. .++++..++.+.+.++.+.+.|+++|.
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~------~~~~~---~~i~~~~~~---~~i~vi~~v~t~ee~~~a~~~G~d~i~ 144 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPD------GETLA---ELVKRIKEY---PGQLLMADCSTLEEGLAAQKLGFDFIG 144 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCC------CCCHH---HHHHHHHhC---CCCeEEEeCCCHHHHHHHHHcCCCEEE
Confidence 457888899999887764211 121 12333 345555652 288999999999999999999999995
No 217
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=86.63 E-value=47 Score=35.21 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=87.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-
Q 038230 221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSVDTFY- 298 (480)
Q Consensus 221 pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~- 298 (480)
-|.|-+..+- ..+..+..+++.+.|++.|.+-..--.|...+..+ ++.++++. +.+.+. ++.++.=|.+
T Consensus 21 ~~~~g~~~~~--~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk---~~L~~~----GL~v~~v~~nl 91 (382)
T TIGR02631 21 RDPFGDATRT--ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFK---KALDET----GLKVPMVTTNL 91 (382)
T ss_pred CCCCCCCCCC--CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHH---HHHHHh----CCeEEEeeccc
Confidence 3778776442 23455667778889999999864222232211111 11123332 333443 7765543332
Q ss_pred H--HHHHHHHHcCCCEEecCCCC------CCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 299 S--KVASEAVGKGAHIVNDVSAG------QLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 299 ~--~v~~aaL~~G~~iINdVsg~------~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
+ .. .+.| .+.+. ... ..-.+.++++++.||+.|.++....+..... ...+....+...+.|.+.
T Consensus 92 ~~~~~----~~~g-~las~-d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~--~~d~~~a~~~~~e~L~~l 163 (382)
T TIGR02631 92 FSHPV----FKDG-GFTSN-DRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDG--AKDVRAALDRMREALNLL 163 (382)
T ss_pred cCCcc----ccCC-CCCCC-CHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCcc--ccCHHHHHHHHHHHHHHH
Confidence 0 00 0112 11111 000 0013467899999999888775312111000 011334455566777788
Q ss_pred HHHHHHC--CCCCCCEEEecCCC------CccChhHHHHHHHhc
Q 038230 371 VRDAELS--GIPAWRIIIDPGLG------FSKKAEHNLDILLGL 406 (480)
Q Consensus 371 i~~a~~~--Gi~~~~IilDPgiG------f~k~~~~~~~~lr~l 406 (480)
.+.+.+. || +|.|-|--. |..+..+.+.+++.+
T Consensus 164 ae~A~~~G~GV---~laLEp~p~~~~~~~ll~T~~~al~li~~v 204 (382)
T TIGR02631 164 AAYAEDQGYGL---RFALEPKPNEPRGDILLPTVGHALAFIETL 204 (382)
T ss_pred HHHHHhhCCCc---EEEEccCCCCCCcceecCCHHHHHHHHHHc
Confidence 8888886 58 499988532 456777888888876
No 218
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=86.60 E-value=3.6 Score=42.86 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 220 TPDSFSDGGKFQSVEAAVSQVRLMISEG-ADMIDIGAQSTRPM------ATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 220 tpDSFsdgg~~~~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~------a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
.++-+..|| .+.++.++.++.+.+.| +|+|+|-+.+.... ..+....+. ...+.++.+++. .++||
T Consensus 216 ~~~~~~~~G--~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ik~~---~~ipv 288 (343)
T cd04734 216 SGDEDTEGG--LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG--PFLPLAARIKQA---VDLPV 288 (343)
T ss_pred ehhhccCCC--CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc--hhHHHHHHHHHH---cCCCE
Confidence 344444555 47889999999999998 89999932222110 000000111 112344555554 25666
Q ss_pred EE--eCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230 293 SV--DTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL 332 (480)
Q Consensus 293 SI--DT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~ 332 (480)
.. +-.+++.++++++.| +|+|---.+.-.+|.+..-+++-
T Consensus 289 i~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g 331 (343)
T cd04734 289 FHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREG 331 (343)
T ss_pred EeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcC
Confidence 55 346899999999975 89887555555578877776653
No 219
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=86.50 E-value=36 Score=33.70 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCC
Q 038230 241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQ 320 (480)
Q Consensus 241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~ 320 (480)
++..+.|+|.|=||| |+ .++ -+.+..+++.+++. ++|+-+-=.+++.+.... -+-++.++-...
T Consensus 26 ~~~~~~gtdai~vGG-S~-----~vt----~~~~~~~v~~ik~~----~lPvilfp~~~~~i~~~a--Da~l~~svlNs~ 89 (232)
T PRK04169 26 EAICESGTDAIIVGG-SD-----GVT----EENVDELVKAIKEY----DLPVILFPGNIEGISPGA--DAYLFPSVLNSR 89 (232)
T ss_pred HHHHhcCCCEEEEcC-CC-----ccc----hHHHHHHHHHHhcC----CCCEEEeCCCccccCcCC--CEEEEEEEecCC
Confidence 668889999999997 32 233 23455667777863 789998777766554331 222334433222
Q ss_pred CCc--------hHHHHHHhcCC-----CEEEEcCCCCCCc--cccccccchhhHHHHHHHHHHHHHHH-HHHCCCCCCCE
Q 038230 321 LDP--------DMYKVVAGLKV-----PYVAMHMRGDPST--MQNEENLQYDDVCKQVASELYSKVRD-AELSGIPAWRI 384 (480)
Q Consensus 321 ~d~--------~m~~l~~~~~~-----~vVlmh~~g~p~~--~~~~~~~~~~~v~~ev~~~l~~~i~~-a~~~Gi~~~~I 384 (480)
++ +.++..+.++. +||++...+.... .....+.+.+++ . ..... .+-.|.+ .+
T Consensus 90 -~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~----~----~~~~lA~~~~g~~--~v 158 (232)
T PRK04169 90 -NPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDI----A----AYAALAAEYLGMP--IV 158 (232)
T ss_pred -CcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHH----H----HHHHHHHHHcCCC--eE
Confidence 22 24455555554 5666654322111 001111111221 1 11122 2556777 89
Q ss_pred EEecCCCCccChhHHHHHHHhc-ccCCC-cEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCCh
Q 038230 385 IIDPGLGFSKKAEHNLDILLGL-AASHA-PILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNI 459 (480)
Q Consensus 385 ilDPgiGf~k~~~~~~~~lr~l-~~~g~-Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV 459 (480)
+++=|-|++... +.++++++ +..+. |+++|- |- |...++ ..++..||+.+-|=..
T Consensus 159 Yle~gs~~g~~~--~~e~I~~v~~~~~~~pvivGG----------GI-----rs~e~a---~~~l~~GAD~VVVGSa 215 (232)
T PRK04169 159 YLEYGGGAGDPV--PPEMVKAVKKALDITPLIYGG----------GI-----RSPEQA---RELMAAGADTIVVGNI 215 (232)
T ss_pred EEECCCCCCCCC--CHHHHHHHHHhcCCCcEEEEC----------CC-----CCHHHH---HHHHHhCCCEEEEChH
Confidence 999887765542 35566666 34566 999983 22 222222 3457789998888664
No 220
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=86.41 E-value=33 Score=38.32 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH-HHHHHH
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS-KVASEA 305 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~-~v~~aa 305 (480)
-|..++.++=++.|+.+.+.|.|.|.+|..+.. +.|.+.+..+++.-. .. .++.++.=+... .-++.|
T Consensus 41 ~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s--------~~D~e~v~~i~~~~l-~~--~~~~i~al~~~~~~did~a 109 (564)
T TIGR00970 41 LPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS--------QTDFDFVREIIEQGA-IP--DDVTIQVLTQSREELIERT 109 (564)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC--------HHHHHHHHHHHHhcC-CC--CCcEEEEEcCCchhhHHHH
Confidence 356789999999999999999999999964433 244554444443310 00 134555544443 337788
Q ss_pred HHc--CCC-----EEecCC
Q 038230 306 VGK--GAH-----IVNDVS 317 (480)
Q Consensus 306 L~~--G~~-----iINdVs 317 (480)
+++ |++ +..++|
T Consensus 110 ~~a~~~~~~~~v~i~~~~S 128 (564)
T TIGR00970 110 FEALSGAKRATVHFYNATS 128 (564)
T ss_pred HHHhcCCCCCEEEEEEcCC
Confidence 876 443 555554
No 221
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=86.29 E-value=16 Score=36.79 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~ 297 (480)
+|| |-+.|. .|.+...++++.+++.|++-|=++| ||.-+ ...+. +|..++.. +++..... ..+...+-+.
T Consensus 7 ~TP--f~~~g~-iD~~~~~~~i~~l~~~Gv~Gi~~~G-stGE~-~~Ls~-~Er~~~~~~~~~~~~~~---~~vi~gv~~~ 77 (285)
T TIGR00674 7 ITP--FKEDGS-VDFAALEKLIDFQIENGTDAIVVVG-TTGES-PTLSH-EEHKKVIEFVVDLVNGR---VPVIAGTGSN 77 (285)
T ss_pred eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECc-cCccc-ccCCH-HHHHHHHHHHHHHhCCC---CeEEEeCCCc
Confidence 477 766665 7999999999999999999999987 33333 34454 55666554 44444432 2445566544
Q ss_pred CH-HHH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230 298 YS-KVA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM 341 (480)
Q Consensus 298 ~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~ 341 (480)
+. +++ +.|-+.|+|-+--+.-.-. ++++ ..++...+.++++-+.
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 44 333 3444459997765543211 2333 3345557889987654
No 222
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.07 E-value=3.9 Score=43.26 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHH
Q 038230 224 FSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA-EKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSK 300 (480)
Q Consensus 224 Fsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~-~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~ 300 (480)
|.++| .+.+++++.++.+.+.|+|+|+|-+.+........+. ..+-....+.++.+++. .++||.. +-..++
T Consensus 244 ~~~~g--~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~---~~~pvi~~G~i~~~~ 318 (382)
T cd02931 244 FQEKG--RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEV---VDVPVIMAGRMEDPE 318 (382)
T ss_pred cccCC--CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHH---CCCCEEEeCCCCCHH
Confidence 44554 5889999999999999999999965331100000000 00001112344555554 2556544 556899
Q ss_pred HHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230 301 VASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL 332 (480)
Q Consensus 301 v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~ 332 (480)
.++++|+.| +|+|---.+...||.+..-+++-
T Consensus 319 ~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 319 LASEAINEGIADMISLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred HHHHHHHcCCCCeeeechHhHhCccHHHHHHcC
Confidence 999999986 89997666666678888777664
No 223
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=85.99 E-value=30 Score=33.72 Aligned_cols=151 Identities=18% Similarity=0.252 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC-----------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF----------- 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~----------- 297 (480)
.+.+++...+++. +.|||+|.+=...- ...+..+...++...+..++. ++|+-+ =|.
T Consensus 9 ~~~~~~~~~~~~~-~~~aD~vElRlD~l----~~~~~~~~~~~~~~~~~~~~~-----~~piI~T~R~~~eGG~~~~~~~ 78 (228)
T TIGR01093 9 PDLEEALATAEKI-CKGADIVELRVDLL----KDPSSNNDVDALIEQLSQLRP-----DKPLIFTIRTISEGGKFPGNEE 78 (228)
T ss_pred CCHHHHHHHHHHh-ccCCCEEEEEechh----cccCcHHHHHHHHHHHHHhcC-----CCcEEEEECChhhCCCCCCCHH
Confidence 4677888888887 89999998865321 111122344455444444442 345443 222
Q ss_pred -CHHHHHHH-HHcCCCEEecCCCCCCCch---HHHHHHhcCCCEEEEc-C-CCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 298 -YSKVASEA-VGKGAHIVNDVSAGQLDPD---MYKVVAGLKVPYVAMH-M-RGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 298 -~~~v~~aa-L~~G~~iINdVsg~~~d~~---m~~l~~~~~~~vVlmh-~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
+.+.++.+ +..|+++| ||.-...++. +...+++.++.+|+.+ + .++|.. +.+.+.
T Consensus 79 ~~~~ll~~~~~~~~~d~v-DiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~-----------------~~l~~~ 140 (228)
T TIGR01093 79 EYLEELKRAADSPGPDFV-DIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSW-----------------EEIVER 140 (228)
T ss_pred HHHHHHHHHHHhCCCCEE-EEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCH-----------------HHHHHH
Confidence 12334555 45578887 4653322233 3344467788988864 3 334421 334577
Q ss_pred HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc---c-cCCCcEE
Q 038230 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL---A-ASHAPIL 414 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~-~~g~Pil 414 (480)
++.+.+.|-+-=+|.. .+++..+++.+++-. + ....|++
T Consensus 141 ~~~~~~~gaDivKia~-----~a~~~~D~~~ll~~~~~~~~~~~~p~i 183 (228)
T TIGR01093 141 LEKALSYGADIVKIAV-----MANSKEDVLTLLEITNKVDEHADVPLI 183 (228)
T ss_pred HHHHHHhCCCEEEEEe-----ccCCHHHHHHHHHHHHHHHhcCCCCEE
Confidence 8888888854334444 346677777776543 1 2456753
No 224
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.86 E-value=36 Score=33.14 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH--HHH--------HHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA--EKE--------LERLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~--~eE--------~~rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
+-+.++-.+.-+-+...|+|||.+|..-+-|-++.-.. ..+ +..+...++..+..- ..+||-+=+|+-
T Consensus 28 ~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~g--vt~PIiLmgYYN 105 (268)
T KOG4175|consen 28 DPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQG--VTCPIILMGYYN 105 (268)
T ss_pred CCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccC--cccceeeeeccc
Confidence 34677777777888899999999998655554432111 111 234444555555441 357898888876
Q ss_pred HHHHHHH--------HcCCC--EEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 300 KVASEAV--------GKGAH--IVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 300 ~v~~aaL--------~~G~~--iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
-.+..+. ++|+. ||-|+--++ -..+-.-+++++..+|.+-.
T Consensus 106 PIl~yG~e~~iq~ak~aGanGfiivDlPpEE-a~~~Rne~~k~gislvpLva 156 (268)
T KOG4175|consen 106 PILRYGVENYIQVAKNAGANGFIIVDLPPEE-AETLRNEARKHGISLVPLVA 156 (268)
T ss_pred HHHhhhHHHHHHHHHhcCCCceEeccCChHH-HHHHHHHHHhcCceEEEeeC
Confidence 6655544 45766 777776433 35678889999999998764
No 225
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.78 E-value=37 Score=33.66 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~ 310 (480)
.+.+++++.| .+.|-+.+.+...........-..+++++.++..+ .+. .++.+++-+..
T Consensus 10 ~~l~~~l~~a---~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~---~~~---~~~~i~~~~~~------------ 68 (279)
T cd00019 10 FGLENALKRA---KEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIA---EEG---PSICLSVHAPY------------ 68 (279)
T ss_pred ccHHHHHHHH---HHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHH---HHc---CCCcEEEEcCc------------
Confidence 4555555555 46799999875422211111111235666665444 332 14556654322
Q ss_pred CEEecCCCCC--------CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 311 HIVNDVSAGQ--------LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 311 ~iINdVsg~~--------~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
.+|-.+... .-...++++++.|+++|.+|....+.. ..++......+.+.+..+.|.+.||
T Consensus 69 -~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~-------~~~~~~~~~~~~l~~l~~~a~~~gi--- 137 (279)
T cd00019 69 -LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQ-------SKEEGLKRVIEALNELIDKAETKGV--- 137 (279)
T ss_pred -eeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCC-------CHHHHHHHHHHHHHHHHHhccCCCC---
Confidence 122221110 014688999999999999886422210 1133445556777788888889999
Q ss_pred CEEEecCCCC----ccChhHHHHHHHhcc-cCCCcEEE
Q 038230 383 RIIIDPGLGF----SKKAEHNLDILLGLA-ASHAPILI 415 (480)
Q Consensus 383 ~IilDPgiGf----~k~~~~~~~~lr~l~-~~g~Pil~ 415 (480)
+|.+-|..+. ..+..+..++++.+. .+.+-+++
T Consensus 138 ~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~l 175 (279)
T cd00019 138 VIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCI 175 (279)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEE
Confidence 4999885433 466677778888764 44454554
No 226
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=85.75 E-value=40 Score=34.82 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHc-CCCEEEeC----CCCCCCCCCCCCHHHHHHHH----HHHHHHHHcCCcCCCCeEEE--eCCCHHHH
Q 038230 234 EAAVSQVRLMISE-GADMIDIG----AQSTRPMATKISAEKELERL----IPVLEAVLTMPEMEGKLVSV--DTFYSKVA 302 (480)
Q Consensus 234 e~a~~~A~~~v~~-GAdiIDIG----~eStrP~a~~v~~~eE~~rl----~~vi~~l~~~~~~~~~pISI--DT~~~~v~ 302 (480)
+..++.++.|+++ |||+|=+. +++ ...+|+++=.+-+ +.+++.+++. .+.|+.+ +-.....+
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~----~~~LSpe~f~efv~P~~krIi~~ik~~---~g~piilH~cG~~~~~l 227 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQK----GSFISPATFREFILPRMQRIFDFLRSN---TSALIVHHSCGAAASLV 227 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCcccc----CCccCHHHHHHHHHHHHHHHHHHHHhc---cCCceEEEeCCCcHHHH
Confidence 4456778889998 99999883 322 2456765533333 4455555543 2455555 55444566
Q ss_pred HHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 303 SEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 303 ~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
+.-.+.|++++| +. .. ..+.++.+.++-.++++-+- .|..... ...-+++.+..++.++.+.. .
T Consensus 228 ~~~~e~g~dvl~-~d---~~~~dl~eak~~~g~k~~l~GNl-Dp~~L~~------~~t~E~i~~~v~~~l~~~g~----~ 292 (321)
T cd03309 228 PSMAEMGVDSWN-VV---MTANNTAELRRLLGDKVVLAGAI-DDVALDT------ATWPEEDARGVAKAAAECAP----I 292 (321)
T ss_pred HHHHHcCCCEEE-ec---CCCCCHHHHHHHhCCCeEEEcCC-ChHHhcC------CCCHHHHHHHHHHHHHHhCC----C
Confidence 666777999998 22 12 36777778888888887652 2321110 11112334444444444422 2
Q ss_pred CCEEEecCCCCc-cChhHHHHHHHh
Q 038230 382 WRIIIDPGLGFS-KKAEHNLDILLG 405 (480)
Q Consensus 382 ~~IilDPgiGf~-k~~~~~~~~lr~ 405 (480)
...|+.|+-+-. ....+|+..+.+
T Consensus 293 ~~fIf~~~~~~~~~~~~~~~~~~~~ 317 (321)
T cd03309 293 HPFISAPTAGLPFSIFPEVLRRVSA 317 (321)
T ss_pred CCEEeCccCCCCcccCHHHHHHHHH
Confidence 478999987643 333455655543
No 227
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.44 E-value=4.8 Score=41.81 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCC
Q 038230 235 AAVSQVRLMISEGA--DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAH 311 (480)
Q Consensus 235 ~a~~~A~~~v~~GA--diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~ 311 (480)
+..+++.+++++|+ |+|-|=. |.+. .+.+...|+.|++.. .++||.. |...++.++.+.++|+|
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~--a~gh---------~~~~~e~I~~ir~~~--p~~~vi~g~V~t~e~a~~l~~aGad 163 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDI--AHGH---------SDSVINMIQHIKKHL--PETFVIAGNVGTPEAVRELENAGAD 163 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEC--CCCc---------hHHHHHHHHHHHhhC--CCCeEEEEecCCHHHHHHHHHcCcC
Confidence 46789999999965 9998853 3343 234455578888763 3588888 89999999999999999
Q ss_pred EEe
Q 038230 312 IVN 314 (480)
Q Consensus 312 iIN 314 (480)
+|.
T Consensus 164 ~i~ 166 (326)
T PRK05458 164 ATK 166 (326)
T ss_pred EEE
Confidence 975
No 228
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=85.26 E-value=4.4 Score=41.90 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
++..++++.++++|+++|.|......+ +...+.|+.+++.. .+++|.+ +-..++.++.++++|+|.
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~-----------~~~~~~i~~ik~~~--p~v~Vi~G~v~t~~~A~~l~~aGaD~ 159 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS-----------VYVIEMIKFIKKKY--PNVDVIAGNVVTAEAARDLIDAGADG 159 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc-----------HHHHHHHHHHHHHC--CCceEEECCCCCHHHHHHHHhcCCCE
Confidence 346789999999999999886422111 13344567777652 2478776 778889999999999999
Q ss_pred Ee
Q 038230 313 VN 314 (480)
Q Consensus 313 IN 314 (480)
|-
T Consensus 160 I~ 161 (325)
T cd00381 160 VK 161 (325)
T ss_pred EE
Confidence 85
No 229
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=85.19 E-value=28 Score=37.97 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---CC--HHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---FY--SKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~~--~~v~~a 304 (480)
..+.+-.++.|+++.+.|||.|-|.= |. ... ..++...+ ++++++. .++||.+=+ +- .....+
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~IkD--ta---G~l-~P~~v~~L---v~alk~~---~~~pi~~H~Hnt~GlA~An~la 226 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSICIKD--MA---GIL-TPKAAKEL---VSGIKAM---TNLPLIVHTHATSGISQMTYLA 226 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEECC--CC---CCc-CHHHHHHH---HHHHHhc---cCCeEEEEeCCCCccHHHHHHH
Confidence 34788999999999999999998862 11 111 22455554 4555554 479999944 33 445568
Q ss_pred HHHcCCCEEec
Q 038230 305 AVGKGAHIVND 315 (480)
Q Consensus 305 aL~~G~~iINd 315 (480)
|+++|+++|..
T Consensus 227 AieAGad~vD~ 237 (468)
T PRK12581 227 AVEAGADRIDT 237 (468)
T ss_pred HHHcCCCEEEe
Confidence 89999998863
No 230
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=85.19 E-value=3 Score=42.60 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.0
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA 255 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~ 255 (480)
+||+--|+|...| .|++++|++.+.++|||.|=+-+
T Consensus 152 ~IiARTDa~~~~g----~deAI~Ra~aY~eAGAD~ifi~~ 187 (292)
T PRK11320 152 VIMARTDALAVEG----LDAAIERAQAYVEAGADMIFPEA 187 (292)
T ss_pred EEEEecCcccccC----HHHHHHHHHHHHHcCCCEEEecC
Confidence 6777889997544 79999999999999999999864
No 231
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=85.19 E-value=22 Score=34.71 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G 309 (480)
+.++.|+.+.+.||+ ++|+....+.++. -.+.++.+++. .++||.+ .-.+.+.+++.++.|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~-----------~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G 93 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET-----------MLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAG 93 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc-----------cHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcC
Confidence 466788888899999 9999875443321 12445566655 3577776 568899999999999
Q ss_pred CCEEecCCCC-CCCch-HHHHHHhcCC-CEEE-EcCC-CCC--CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 310 AHIVNDVSAG-QLDPD-MYKVVAGLKV-PYVA-MHMR-GDP--STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 310 ~~iINdVsg~-~~d~~-m~~l~~~~~~-~vVl-mh~~-g~p--~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
++.+- +... -.+++ +.+++++++. .+++ +..+ +.+ ....-+ --++.. .....+.+..+.+.|+.
T Consensus 94 ~~~v~-ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~--~~~~~~----~~~~~~~~~~l~~~G~d-- 164 (243)
T cd04731 94 ADKVS-INSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTH--GGRKPT----GLDAVEWAKEVEELGAG-- 164 (243)
T ss_pred CceEE-ECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEc--CCceec----CCCHHHHHHHHHHCCCC--
Confidence 87552 3322 12444 5666677753 3443 2221 111 000000 000000 01123555677888997
Q ss_pred CEEE---ecCCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 383 RIII---DPGLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 383 ~Iil---DPgiGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.|++ ++. |... ..++++++++ +..+.|++..
T Consensus 165 ~i~v~~i~~~-g~~~--g~~~~~i~~i~~~~~~pvia~ 199 (243)
T cd04731 165 EILLTSMDRD-GTKK--GYDLELIRAVSSAVNIPVIAS 199 (243)
T ss_pred EEEEeccCCC-CCCC--CCCHHHHHHHHhhCCCCEEEe
Confidence 5666 431 1111 1257777777 3468998763
No 232
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=84.93 E-value=21 Score=35.95 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=68.7
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~ 297 (480)
+|| |-+.|. .|.+...++++.+++.|++-|=++|. |.-+ ...+. +|..++.. +++..... ..+.+.+=+.
T Consensus 10 ~TP--f~~dg~-iD~~~l~~~i~~l~~~Gv~gi~~~Gs-~GE~-~~ls~-~Er~~~~~~~~~~~~~~---~~vi~gv~~~ 80 (292)
T PRK03170 10 VTP--FKEDGS-VDFAALRKLVDYLIANGTDGLVVVGT-TGES-PTLTH-EEHEELIRAVVEAVNGR---VPVIAGTGSN 80 (292)
T ss_pred eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECCc-CCcc-ccCCH-HHHHHHHHHHHHHhCCC---CcEEeecCCc
Confidence 467 766664 79999999999999999999999874 3322 34454 55666554 44443322 2334445433
Q ss_pred CH-HHH---HHHHHcCCCEEecCCCCCC---CchH----HHHHHhcCCCEEEEcC
Q 038230 298 YS-KVA---SEAVGKGAHIVNDVSAGQL---DPDM----YKVVAGLKVPYVAMHM 341 (480)
Q Consensus 298 ~~-~v~---~aaL~~G~~iINdVsg~~~---d~~m----~~l~~~~~~~vVlmh~ 341 (480)
+. +++ +.|-++|++-+--+...-. ++++ -.++...+.|+++-+.
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 33 332 3344469997765543211 2333 3345556899998764
No 233
>PRK08508 biotin synthase; Provisional
Probab=84.92 E-value=14 Score=37.24 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKVASEAVG 307 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v~~aaL~ 307 (480)
+.++|++++.|++..+.|+.-+-+- .|++ +. + +.+++++..+++.+++.. .++.+ |.=..+++++++--+
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv-~sg~-~~---~-~~~~e~~~ei~~~ik~~~--p~l~i~~s~G~~~~e~l~~Lk~ 110 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLV-TSGR-GL---D-DKKLEYVAEAAKAVKKEV--PGLHLIACNGTASVEQLKELKK 110 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE-eccC-CC---C-cccHHHHHHHHHHHHhhC--CCcEEEecCCCCCHHHHHHHHH
Confidence 3699999999999999999887762 1122 11 1 246788999999998752 24433 555557888888778
Q ss_pred cCCCEEe-----------cCCC-CCCCc--hHHHHHHhcCCCEE
Q 038230 308 KGAHIVN-----------DVSA-GQLDP--DMYKVVAGLKVPYV 337 (480)
Q Consensus 308 ~G~~iIN-----------dVsg-~~~d~--~m~~l~~~~~~~vV 337 (480)
+|++.+| .+.. .++++ +.++.+++.|..+.
T Consensus 111 aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 154 (279)
T PRK08508 111 AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLC 154 (279)
T ss_pred cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec
Confidence 9999888 2321 11111 25566888886554
No 234
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=84.90 E-value=4.1 Score=41.46 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-CCCHHHHHHHHHcCC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-TFYSKVASEAVGKGA 310 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-T~~~~v~~aaL~~G~ 310 (480)
+++...+.+++..+.||+.|+++.....++.. ..+ ..++.+++. .++||.+= ...++.++.|.++|+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-----~~~----~~i~~l~~~---~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRR-----LTW----DDLAWLRSQ---WKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-----CCH----HHHHHHHHh---cCCCEEEeecCCHHHHHHHHHCCC
Confidence 45666666777778899999998755433322 112 345666665 36777754 467788888888888
Q ss_pred CEEe
Q 038230 311 HIVN 314 (480)
Q Consensus 311 ~iIN 314 (480)
+.|-
T Consensus 195 d~I~ 198 (299)
T cd02809 195 DGIV 198 (299)
T ss_pred CEEE
Confidence 8774
No 235
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=84.86 E-value=20 Score=35.19 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=89.3
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC--EEecC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH--IVNDV 316 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~--iINdV 316 (480)
.++...+.|+|.|=||| | ..++ +.++. +++.+++.. .++|+-+-=.+++.+. .|+| ++.++
T Consensus 17 ~~~~~~~~gtdai~vGG-S-----~~v~--~~~~~---~~~~ik~~~--~~~Pvilfp~~~~~i~----~~aDa~l~~sv 79 (219)
T cd02812 17 IAKLAEESGTDAIMVGG-S-----DGVS--STLDN---VVRLIKRIR--RPVPVILFPSNPEAVS----PGADAYLFPSV 79 (219)
T ss_pred HHHHHHhcCCCEEEECC-c-----cchh--hhHHH---HHHHHHHhc--CCCCEEEeCCCccccC----cCCCEEEEEee
Confidence 34444459999999997 2 2232 33444 444444431 1488988888887763 3444 34443
Q ss_pred CCCCCCch--------HHHHHHh--cCC-----CEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 317 SAGQLDPD--------MYKVVAG--LKV-----PYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 317 sg~~~d~~--------m~~l~~~--~~~-----~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
-... +++ -++..++ .+- +|+++...+.-....+ .+. .+-. +....-...++..|+.
T Consensus 80 lns~-n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~-a~~--~~~~----e~~~ayA~aae~~g~~- 150 (219)
T cd02812 80 LNSG-DPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTG-AKT--DLKP----EDAAAYALAAEYLGMP- 150 (219)
T ss_pred ecCC-CchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeec-cCc--CCCH----HHHHHHHHHHHHcCCe-
Confidence 3222 333 2333333 222 6777765432211100 000 0111 1222334456788865
Q ss_pred CCEEEecCCCCccChhHHHHHHHhc-ccC-CCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGL-AAS-HAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~-g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
=+++| +-|-. .+.++++++ +.. +.|+.+|- |- |....+ ..+...||+.+-+=.
T Consensus 151 -ivyLe-~SG~~----~~~e~I~~v~~~~~~~pl~vGG----------GI-----rs~e~a---~~l~~aGAD~VVVGs 205 (219)
T cd02812 151 -IVYLE-YSGAY----GPPEVVRAVKKVLGDTPLIVGG----------GI-----RSGEQA---KEMAEAGADTIVVGN 205 (219)
T ss_pred -EEEeC-CCCCc----CCHHHHHHHHHhcCCCCEEEeC----------CC-----CCHHHH---HHHHHcCCCEEEECc
Confidence 68888 55544 346667666 345 89999983 22 222222 345567998887765
No 236
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=84.79 E-value=15 Score=40.54 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC------------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY------------ 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~------------ 298 (480)
.+.++++..+++....|||+|.+=..--. ..+..+++. .+++ . .+.|+-+ |++
T Consensus 32 ~~~~e~~~~~~~~~~~~~D~vElRlD~l~----~~~~~~~~~---~~~~----~---~~~plI~-T~R~~~eGG~~~~~~ 96 (529)
T PLN02520 32 DSVDKMLIEMAKAKELGADLVEIRLDFLK----NFNPREDLK---TLIK----Q---SPLPTLV-TYRPKWEGGQYEGDE 96 (529)
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEecccc----ccCCHHHHH---HHHh----c---CCCcEEE-EeccHHHCCCCCCCH
Confidence 34788888898888899999988653211 111122222 2221 2 2445433 333
Q ss_pred ---HHHHHHHHHcCCCEEecCCCCCCCchH---HHHHHhcCCCEEEE-cC-CCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 299 ---SKVASEAVGKGAHIVNDVSAGQLDPDM---YKVVAGLKVPYVAM-HM-RGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 299 ---~~v~~aaL~~G~~iINdVsg~~~d~~m---~~l~~~~~~~vVlm-h~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
-+..+.+++.|+++| ||--.. .+++ +.-++..++.+|+. |+ .++|.. +.+.+.
T Consensus 97 ~~~~~ll~~~~~~~~d~i-DiEl~~-~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~-----------------~el~~~ 157 (529)
T PLN02520 97 NKRQDALRLAMELGADYV-DVELKV-AHEFINSISGKKPEKCKVIVSSHNYENTPSV-----------------EELGNL 157 (529)
T ss_pred HHHHHHHHHHHHhCCCEE-EEEcCC-chhHHHHHHhhhhcCCEEEEEecCCCCCCCH-----------------HHHHHH
Confidence 335677888898887 464322 2344 33444568888875 54 455531 345577
Q ss_pred HHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEE
Q 038230 371 VRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPIL 414 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil 414 (480)
++++.+.|-+--+|.. +.++..+++++++.....+.|++
T Consensus 158 ~~~~~~~gaDi~Kia~-----~~~~~~D~~~ll~~~~~~~~p~i 196 (529)
T PLN02520 158 VARIQATGADIVKIAT-----TALDITDVARMFQITVHSQVPTI 196 (529)
T ss_pred HHHHHHhCCCEEEEec-----CCCCHHHHHHHHHHHhhcCCCEE
Confidence 7788888854223333 56778888888864433477864
No 237
>PLN02428 lipoic acid synthase
Probab=84.76 E-value=30 Score=36.36 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=80.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----CHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----YSKVASEA 305 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~~~v~~aa 305 (480)
..+.++..+.|+...+.|++.+-|=+. +++. . ++.+.+.+..+++.|++.. .++.|.+=+. +.+.++.-
T Consensus 129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg-~rdd---l-~D~ga~~~~elir~Ir~~~--P~i~Ie~L~pdf~~d~elL~~L 201 (349)
T PLN02428 129 PPDPDEPENVAEAIASWGVDYVVLTSV-DRDD---L-PDGGSGHFAETVRRLKQLK--PEILVEALVPDFRGDLGAVETV 201 (349)
T ss_pred CCChhhHHHHHHHHHHcCCCEEEEEEc-CCCC---C-CcccHHHHHHHHHHHHHhC--CCcEEEEeCccccCCHHHHHHH
Confidence 356788889999999999987654221 1111 1 2356778888888888752 2343443211 45566666
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC--CCCCCC
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS--GIPAWR 383 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~~~~ 383 (480)
.++|.+.+| .+.+. .+++.+.+.+. ...|+ ...+.++.+.+. |+.
T Consensus 202 ~eAG~d~i~-hnlET-v~rL~~~Ir~~--------------------~~sye--------~~Le~L~~ak~~~pGi~--- 248 (349)
T PLN02428 202 ATSGLDVFA-HNIET-VERLQRIVRDP--------------------RAGYK--------QSLDVLKHAKESKPGLL--- 248 (349)
T ss_pred HHcCCCEEc-cCccC-cHHHHHHhcCC--------------------CCCHH--------HHHHHHHHHHHhCCCCe---
Confidence 666777766 22222 34444433210 01122 233556666666 774
Q ss_pred EEEecCCCCccChhHHHHHHHhcccCCCc
Q 038230 384 IIIDPGLGFSKKAEHNLDILLGLAASHAP 412 (480)
Q Consensus 384 IilDPgiGf~k~~~~~~~~lr~l~~~g~P 412 (480)
+---=.+|++.+.++-.++++.++..++-
T Consensus 249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd 277 (349)
T PLN02428 249 TKTSIMLGLGETDEEVVQTMEDLRAAGVD 277 (349)
T ss_pred EEEeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence 22222347788888877777777544443
No 238
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.41 E-value=5.5 Score=40.22 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeCC---------CCCCCC----CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGA---------QSTRPM----ATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFY 298 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~---------eStrP~----a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~ 298 (480)
++..+.|+.+.+.|||.|++-. ++.+|- ....+....+..-.+.++.+++. .++||.- +-++
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~---~~ipii~~GGI~~ 242 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA---VEIPIIGVGGIAS 242 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh---cCCCEEEECCCCC
Confidence 3577788888999999998721 111110 00011111122223445555554 2455554 3456
Q ss_pred HHHHHHHHHcCCCEEecCCC
Q 038230 299 SKVASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg 318 (480)
++.+++++++|++.|---++
T Consensus 243 ~~da~~~l~~GAd~V~igra 262 (296)
T cd04740 243 GEDALEFLMAGASAVQVGTA 262 (296)
T ss_pred HHHHHHHHHcCCCEEEEchh
Confidence 77777777777777764444
No 239
>PRK08227 autoinducer 2 aldolase; Validated
Probab=84.23 E-value=14 Score=37.19 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=67.6
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-------CCHH----HHHHHHHcC
Q 038230 241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-------FYSK----VASEAVGKG 309 (480)
Q Consensus 241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-------~~~~----v~~aaL~~G 309 (480)
++-++-|||-+-+. ..+|++ .+.+.++.+..++++-.+. ++|+-+=+ ..++ .++-|.+.|
T Consensus 101 eeAvrlGAdAV~~~---v~~Gs~--~E~~~l~~l~~v~~ea~~~----G~Plla~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 101 EDAVRLNACAVAAQ---VFIGSE--YEHQSIKNIIQLVDAGLRY----GMPVMAVTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHHHCCCCEEEEE---EecCCH--HHHHHHHHHHHHHHHHHHh----CCcEEEEecCCCCcCchHHHHHHHHHHHHHHc
Confidence 34457899976664 334532 2344556666666666554 88877611 1222 345566679
Q ss_pred CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389 (480)
Q Consensus 310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg 389 (480)
||+|---.. .+.+.++++...+|||+- |=|++ .. +.+.+.+..+.++|-. |
T Consensus 172 ADiVK~~y~---~~~f~~vv~a~~vPVvia---GG~k~-~~--------------~~~L~~v~~ai~aGa~--------G 222 (264)
T PRK08227 172 AQIIKTYYV---EEGFERITAGCPVPIVIA---GGKKL-PE--------------RDALEMCYQAIDEGAS--------G 222 (264)
T ss_pred CCEEecCCC---HHHHHHHHHcCCCcEEEe---CCCCC-CH--------------HHHHHHHHHHHHcCCc--------e
Confidence 999873221 146777777666777752 33432 11 2344566666677776 6
Q ss_pred CCCccChhH
Q 038230 390 LGFSKKAEH 398 (480)
Q Consensus 390 iGf~k~~~~ 398 (480)
+-+|.+..|
T Consensus 223 v~~GRNIfQ 231 (264)
T PRK08227 223 VDMGRNIFQ 231 (264)
T ss_pred eeechhhhc
Confidence 666665443
No 240
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=84.20 E-value=57 Score=34.29 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCCCC--CCCC----------CHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTRPM--ATKI----------SAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStrP~--a~~v----------~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|.+.+++-|+++.+.|+. ++=+|++--|.. .... +.++=+..+..++-.+.+. ++|
T Consensus 64 ed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~~e~----Glp 139 (349)
T PRK09261 64 HDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDINEL----GLP 139 (349)
T ss_pred CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHHHHh----CCC
Confidence 4788999999999999985 777777654432 2222 1244455555554444554 889
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCE----------------------------------
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPY---------------------------------- 336 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~v---------------------------------- 336 (480)
+.-+-.+|...+...+. ++|+- |.+.+ ......+++...+.||
T Consensus 140 vatE~ld~~~~~y~~dl-vs~~~-IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~ 217 (349)
T PRK09261 140 AATEFLDPITPQYIADL-ISWGA-IGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGR 217 (349)
T ss_pred eEEEecccccHHHHHhh-cceee-eccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCc
Confidence 87766666555555443 11111 11111 0122233333332222
Q ss_pred -EEEcCCCCCCcc------ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc--
Q 038230 337 -VAMHMRGDPSTM------QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-- 406 (480)
Q Consensus 337 -Vlmh~~g~p~~~------~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-- 406 (480)
...++.|.|..- ...++|.+ +.+......+.+.|+. ..|++||..|- .|+...-..+++.+
T Consensus 218 ~~~i~t~GN~~~hlilRGg~~~pNy~~--------~~i~~~~~~l~k~~l~-~~v~VD~SH~ns~k~~~~Q~~V~~~v~~ 288 (349)
T PRK09261 218 SAIVSTTGNPDCHVILRGGNKGPNYDA--------ESVAEAKERLEKAGLP-PRIMIDCSHANSGKDHKRQPEVARDVAA 288 (349)
T ss_pred EEEEECCCCCCEEEEECCCCCCCCCCH--------HHHHHHHHHHHHcCCC-CCEEEECCCcccCcchhhhHHHHHHHHH
Confidence 223455655432 12344443 3345566666778884 68999999885 45554445544443
Q ss_pred -ccCCCcEEEeecccccc
Q 038230 407 -AASHAPILIGPSRKRFL 423 (480)
Q Consensus 407 -~~~g~Pil~G~SrKsfi 423 (480)
..-|-.-+.|+==-||+
T Consensus 289 qi~~G~~~I~GvMiES~l 306 (349)
T PRK09261 289 QIAAGNKAIIGVMIESHL 306 (349)
T ss_pred HHHcCCccceEEEEEEec
Confidence 12244445566555664
No 241
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=84.10 E-value=52 Score=33.49 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHH----HcCCCEEEeCC----CCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH
Q 038230 231 QSVEAAVSQVRLMI----SEGADMIDIGA----QSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV 301 (480)
Q Consensus 231 ~~~e~a~~~A~~~v----~~GAdiIDIG~----eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v 301 (480)
-+.|.+++.|+++. +.|+.++==|+ .-|.|.+ .....++=++ +++.+++. .++||--|-.+++-
T Consensus 27 Es~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~----iL~~vk~~---~GlpvvTeV~~~~~ 99 (281)
T PRK12457 27 ESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLR----IFEEVKAR---FGVPVITDVHEVEQ 99 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHH----HHHHHHHH---HCCceEEEeCCHHH
Confidence 56788888888876 59998854432 2344532 2333234344 35666766 49999999999999
Q ss_pred HHHHHHcCCCEEecCCCCCC-CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 302 ASEAVGKGAHIVNDVSAGQL-DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 302 ~~aaL~~G~~iINdVsg~~~-d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
++.+.++ +|||- |-+.+- .-+++.-+++.+.+|.+ .+|.--++ +.....+++..+.|.+
T Consensus 100 ~~~~ae~-vDilQ-IgAr~~rntdLL~a~~~t~kpV~l--KrGqf~s~----------------~e~~~aae~i~~~Gn~ 159 (281)
T PRK12457 100 AAPVAEV-ADVLQ-VPAFLARQTDLVVAIAKTGKPVNI--KKPQFMSP----------------TQMKHVVSKCREAGND 159 (281)
T ss_pred HHHHhhh-CeEEe-eCchhhchHHHHHHHhccCCeEEe--cCCCcCCH----------------HHHHHHHHHHHHcCCC
Confidence 9999999 89886 655431 24688888888876665 34422211 2234567777888986
Q ss_pred CCCEEEec-CCCCccC--h--hHHHHHHHhcccCCCcEEEeeccc----cccccccCCCCcCcccHH-HHHHHHHHHHcC
Q 038230 381 AWRIIIDP-GLGFSKK--A--EHNLDILLGLAASHAPILIGPSRK----RFLGEICNRPSADERDPA-TIASITAGVLGG 450 (480)
Q Consensus 381 ~~~IilDP-giGf~k~--~--~~~~~~lr~l~~~g~Pil~G~SrK----sfi~~v~g~~~~~~r~~~-t~a~~~~a~~~G 450 (480)
+|++=- |+-|+-+ . ...+.+++++ ..++|+++=.|.. +-.|..+ .-+|... .++- .|+..|
T Consensus 160 --~vilcERG~~fgy~~~~~D~~~ip~mk~~-~t~lPVi~DpSHsvq~p~~~g~~s----~G~re~v~~lar--AAvA~G 230 (281)
T PRK12457 160 --RVILCERGSSFGYDNLVVDMLGFRQMKRT-TGDLPVIFDVTHSLQCRDPLGAAS----GGRRRQVLDLAR--AGMAVG 230 (281)
T ss_pred --eEEEEeCCCCCCCCCcccchHHHHHHHhh-CCCCCEEEeCCccccCCCCCCCCC----CCCHHHHHHHHH--HHHHhC
Confidence 777654 7766332 1 2233444431 2499999977743 1111111 2345554 4433 445556
Q ss_pred Cc--EEEcCC
Q 038230 451 AN--IVRVHN 458 (480)
Q Consensus 451 a~--IlRvHd 458 (480)
|| ++-||.
T Consensus 231 aDGl~iEvHp 240 (281)
T PRK12457 231 LAGLFLEAHP 240 (281)
T ss_pred CCEEEEEecC
Confidence 65 888897
No 242
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=83.98 E-value=3.5 Score=41.97 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.0
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA 255 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~ 255 (480)
+||.-=|+|..+| .|++++|++.+.++|||.|=+-+
T Consensus 147 ~IiARTDa~~~~g----~deAI~Ra~ay~~AGAD~vfi~g 182 (285)
T TIGR02317 147 VIIARTDARAVEG----LDAAIERAKAYVEAGADMIFPEA 182 (285)
T ss_pred EEEEEcCcccccC----HHHHHHHHHHHHHcCCCEEEeCC
Confidence 6777889997654 79999999999999999999854
No 243
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=83.93 E-value=33 Score=33.53 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEec
Q 038230 236 AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVND 315 (480)
Q Consensus 236 a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINd 315 (480)
-++...++.++||+||-+-+ ..||-.. +.++.+ ++..+. .+..++=|....+....|.++|+|+|-.
T Consensus 87 tlkeVd~L~~~Ga~IIA~Da-T~R~RP~-----~~~~~~---i~~~k~----~~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDA-TDRPRPD-----GDLEEL---IARIKY----PGQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred cHHHHHHHHHCCCcEEEeec-ccCCCCc-----chHHHH---HHHhhc----CCcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 56778899999999999987 3454321 123333 333332 5889999999999999999999999975
Q ss_pred CCCC-CC------Cc--hHHHHHHhcCCCEEE
Q 038230 316 VSAG-QL------DP--DMYKVVAGLKVPYVA 338 (480)
Q Consensus 316 Vsg~-~~------d~--~m~~l~~~~~~~vVl 338 (480)
.-.+ +. +| .+++-+.+.|+.||.
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIA 185 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIA 185 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHhCCCeEEe
Confidence 4221 11 12 355555668888886
No 244
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.90 E-value=5.2 Score=41.76 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeC-CC
Q 038230 221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDT-FY 298 (480)
Q Consensus 221 pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT-~~ 298 (480)
++-+.+|| .+.++.++.++.+.+.|+|+|+|.+.+..+....... .-+ +.++.+++... .++||. +-. ++
T Consensus 224 ~~~~~~~g--~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~-~~~----~~~~~ik~~~~-~~iPVi~~Ggi~t 295 (353)
T cd04735 224 PEEPEEPG--IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRD-DNQ----TIMELVKERIA-GRLPLIAVGSINT 295 (353)
T ss_pred cccccCCC--CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCc-chH----HHHHHHHHHhC-CCCCEEEECCCCC
Confidence 44455565 4678999999999999999999976321111000110 011 12222222210 144544 434 47
Q ss_pred HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHh
Q 038230 299 SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~ 331 (480)
++.++++++.|+|+|---.+...+|.+..-+++
T Consensus 296 ~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 296 PDDALEALETGADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred HHHHHHHHHcCCChHHHhHHHHhCccHHHHHHc
Confidence 999999999998887655554456777766655
No 245
>PRK07360 FO synthase subunit 2; Reviewed
Probab=83.82 E-value=18 Score=38.03 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~a 304 (480)
.++.|++++.|++..+.|+.-+-+-+. ..|.. .+++++..+++.+++.. .-+.|..+.+..+..
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G-~~p~~------~~~e~~~~~i~~ik~~~----~~i~i~a~s~~ei~~ 153 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGG-LHPAA------DSLEFYLEILEAIKEEF----PDIHLHAFSPMEVYF 153 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccC-CCCCC------CcHHHHHHHHHHHHHhC----CCcceeeCCHHHHHH
Confidence 379999999999999999999988742 34432 25677777888888642 126677666655443
No 246
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.79 E-value=4.2 Score=42.39 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQ----STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASE 304 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~e----StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~a 304 (480)
.+.+++++.++.+.+.|+|+|+|... .+.+..... ... ...+..+.+++. .++||... -+.++.+++
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~-~~~---~~~~~~~~ik~~---v~iPVi~~G~i~~~~~a~~ 293 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSV-PRG---AFAWATAKLKRA---VDIPVIASNRINTPEVAER 293 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccC-Cch---hhHHHHHHHHHh---CCCCEEEcCCCCCHHHHHH
Confidence 57899999999999999999999432 111110001 111 123345566665 37777764 458999999
Q ss_pred HHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230 305 AVGKG-AHIVNDVSAGQLDPDMYKVVAGL 332 (480)
Q Consensus 305 aL~~G-~~iINdVsg~~~d~~m~~l~~~~ 332 (480)
+++.| +|+|---.+.-.||.+..-+++-
T Consensus 294 ~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 294 LLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred HHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 99986 88887555555578887777664
No 247
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=83.74 E-value=1.9 Score=42.16 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCC
Q 038230 236 AVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGA 310 (480)
Q Consensus 236 a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~ 310 (480)
-++.|+.+.+.||+ ++|+.+.. .+ ...-..+|+.+.+. ..+||.+|- ++.+.+++.++.|+
T Consensus 31 P~~~a~~~~~~g~~~l~ivDLdaa~--~g---------~~~n~~~i~~i~~~---~~~~i~vgGGIrs~ed~~~ll~~Ga 96 (229)
T PF00977_consen 31 PVEVAKAFNEQGADELHIVDLDAAK--EG---------RGSNLELIKEIAKE---TGIPIQVGGGIRSIEDAERLLDAGA 96 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEEHHHHC--CT---------HHHHHHHHHHHHHH---SSSEEEEESSE-SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCEEEEEEccCcc--cC---------chhHHHHHHHHHhc---CCccEEEeCccCcHHHHHHHHHhCC
Confidence 45678888899997 89998632 11 11223566676665 478999985 78999999999998
Q ss_pred C--EEecCCCCCCCch-HHHHHHhcCC-CEEEE-cC-CC-CCCcc--ccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 311 H--IVNDVSAGQLDPD-MYKVVAGLKV-PYVAM-HM-RG-DPSTM--QNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 311 ~--iINdVsg~~~d~~-m~~l~~~~~~-~vVlm-h~-~g-~p~~~--~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
+ +|++.. .+ +++ +-+++++||. .+|+. .. .| ...+- ++... ..+.+.++++.+.|+.
T Consensus 97 ~~Vvigt~~-~~-~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~-----------~~~~~~~~~~~~~g~~- 162 (229)
T PF00977_consen 97 DRVVIGTEA-LE-DPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSG-----------IDLEEFAKRLEELGAG- 162 (229)
T ss_dssp SEEEESHHH-HH-CCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEE-----------EEHHHHHHHHHHTT-S-
T ss_pred CEEEeChHH-hh-chhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCC-----------cCHHHHHHHHHhcCCc-
Confidence 7 566554 23 444 5667777887 55543 22 23 11000 00000 1235667778889986
Q ss_pred CCEEEec---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 382 WRIIIDP---GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 382 ~~IilDP---giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
+=|+.|- |.+.|- ++++++++ ...+.|++.|
T Consensus 163 ~ii~tdi~~dGt~~G~----d~~~~~~l~~~~~~~vias 197 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGP----DLELLKQLAEAVNIPVIAS 197 (229)
T ss_dssp EEEEEETTTTTTSSS------HHHHHHHHHHHSSEEEEE
T ss_pred EEEEeeccccCCcCCC----CHHHHHHHHHHcCCCEEEe
Confidence 2356665 443443 35667766 3458999874
No 248
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=83.67 E-value=18 Score=36.90 Aligned_cols=109 Identities=8% Similarity=0.114 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~ 342 (480)
..+++..++.. -...+++.++.+.+++.+++ +.++|-.++..... + -+..+++++++||++--+.
T Consensus 7 k~iL~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 83 (286)
T PRK12738 7 KYLLQDAQANG---YAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_pred HHHHHHHHHCC---ceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455555541 35689999999999888885 89998877654321 2 2445567899999984444
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.++|++ .|-+| |-.-..++|++.-|++ +..|+.+
T Consensus 84 g~~----------------------~e~i~~ai~~GFt--SVM~D---gS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 84 HES----------------------LDDIRRKVHAGVR--SAMID---GSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred CCC----------------------HHHHHHHHHcCCC--eEeec---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 321 1455667788997 89999 4455678888887776 3446655
No 249
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=83.49 E-value=7.5 Score=40.44 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=63.9
Q ss_pred EEEEecCCCCCCCCCc-cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 214 MGILNLTPDSFSDGGK-FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 214 mGIlN~tpDSFsdgg~-~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
+|+ =++++.+..|+. -.+.++.++.++.+.+.|+|+|+|...++.+... ....+.++.+++. .++||
T Consensus 221 v~v-Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~--------~~~~~~~~~ik~~---~~ipv 288 (338)
T cd02933 221 VGI-RLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPE--------DQPPDFLDFLRKA---FKGPL 288 (338)
T ss_pred eEE-EECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCccc--------ccchHHHHHHHHH---cCCCE
Confidence 554 234443433332 2578999999999999999999994323322110 1122334445554 24554
Q ss_pred -EEeCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230 293 -SVDTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 293 -SIDT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~ 331 (480)
..--.+++.++++++.| +|+|---.+.-.||.+..-+++
T Consensus 289 i~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 289 IAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred EEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence 33444599999999985 8888755555456776655544
No 250
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=83.42 E-value=55 Score=33.29 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=47.1
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc-CCCCeEEEeCCCHHH-HHH
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE-MEGKLVSVDTFYSKV-ASE 304 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~-~~~~pISIDT~~~~v-~~a 304 (480)
.|.+++.++=++.|+.+.+.|.+.|++|. |.. .++|.+.+ +.|.+... ..+..++.=+....- ++.
T Consensus 16 ~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf----P~~----~~~e~e~~----~~i~~~~~~~~~~~~~al~r~~~~die~ 83 (284)
T cd07942 16 LAEPMSVEQKLRFFKLLVKIGFKEIEVGF----PSA----SQTDFDFV----RELIEEDLIPDDVTIQVLTQAREDLIER 83 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeC----CCC----CHHHHHHH----HHHHHccCCCCCCEEEEEcCCChhhHHH
Confidence 35678899999999999999999999995 432 23443333 33322100 024556666666555 889
Q ss_pred HHHc--CCC
Q 038230 305 AVGK--GAH 311 (480)
Q Consensus 305 aL~~--G~~ 311 (480)
|+++ |++
T Consensus 84 a~~~~~~~~ 92 (284)
T cd07942 84 TFEALRGAK 92 (284)
T ss_pred HHHHhCCCC
Confidence 9987 554
No 251
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=83.33 E-value=4.7 Score=39.79 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT 296 (480)
+.+++++++.|+.. ++++|+||||+.-.-| |+... .+.+++..+++.+++. ++||++=.
T Consensus 76 ~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll---~dp~~l~~iv~av~~~----~~PVsvKi 141 (231)
T TIGR00736 76 FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELL---KNKELLKEFLTKMKEL----NKPIFVKI 141 (231)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhc---CCHHHHHHHHHHHHcC----CCcEEEEe
Confidence 36788888887775 7799999999743222 22222 2455777788888843 67887743
No 252
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=83.32 E-value=15 Score=35.60 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS 317 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs 317 (480)
+.+++.+++||++| |. |+.. . .+++..++. ++|..--...|..+..|+++|++++-=.-
T Consensus 71 ~~a~~a~~aGA~Fi-vs-----P~~~-----~------~v~~~~~~~----~i~~iPG~~TptEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 71 EQLRQAVDAGAQFI-VS-----PGLT-----P------ELAKHAQDH----GIPIIPGVATPSEIMLALELGITALKLFP 129 (204)
T ss_pred HHHHHHHHcCCCEE-EC-----CCCC-----H------HHHHHHHHc----CCcEECCCCCHHHHHHHHHCCCCEEEECC
Confidence 35788899999999 32 5532 1 345555554 88888899999999999999999997554
Q ss_pred CCCCC-chHHHHHHhcCCCEEEEcCCCCC
Q 038230 318 AGQLD-PDMYKVVAGLKVPYVAMHMRGDP 345 (480)
Q Consensus 318 g~~~d-~~m~~l~~~~~~~vVlmh~~g~p 345 (480)
+...- +.+++-++.-=-.+=+|+..|..
T Consensus 130 A~~~GG~~yikal~~plp~i~~~ptGGV~ 158 (204)
T TIGR01182 130 AEVSGGVKMLKALAGPFPQVRFCPTGGIN 158 (204)
T ss_pred chhcCCHHHHHHHhccCCCCcEEecCCCC
Confidence 43222 45554444321234466777764
No 253
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=83.29 E-value=21 Score=32.80 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC-----CHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKIS-AEKELERLIPVLEAVLTMPEMEGKLVSVDTF-----YSKVASE 304 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-----~~~v~~a 304 (480)
...+++++.+++..+.|||.+.+-... .-..+ .+++ +...++.+.+.. ..++|+.+... .++.+.+
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~----~~~~~~~~~~---~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~ 133 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINI----GSLKEGDWEE---VLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAK 133 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccH----HHHhCCCHHH---HHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHH
Confidence 446899999999999999999996421 11111 0122 223333333321 02788887655 6777665
Q ss_pred H----HHcCCCEEecCCCCC---CC-chHHHHHHhc--CCCEEEEc
Q 038230 305 A----VGKGAHIVNDVSAGQ---LD-PDMYKVVAGL--KVPYVAMH 340 (480)
Q Consensus 305 a----L~~G~~iINdVsg~~---~d-~~m~~l~~~~--~~~vVlmh 340 (480)
. -+.|++.|-+-++.. .+ +.+..+.+.. +.++++..
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 4 346999998766521 12 4455555554 45666543
No 254
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.22 E-value=12 Score=38.61 Aligned_cols=86 Identities=14% Similarity=0.027 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTR-----PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF-------- 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr-----P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~-------- 297 (480)
.+++...+.|+...+.|+|.||||+.=.- .|. .-.-..+.+++..+++++++... .++|||+=++
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~-~~~pVsvKiR~g~~~~~~ 149 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVP-AHLPVTVKVRLGWDSGER 149 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcC-CCcceEEEEECCCCCchH
Confidence 45677777888888899999999963211 111 11123567788888888887531 1477776422
Q ss_pred CHHHHHHHHHcCCCEEecCCCC
Q 038230 298 YSKVASEAVGKGAHIVNDVSAG 319 (480)
Q Consensus 298 ~~~v~~aaL~~G~~iINdVsg~ 319 (480)
..+.++.+-++|++.|. |.+.
T Consensus 150 ~~~~a~~l~~~Gvd~i~-Vh~R 170 (312)
T PRK10550 150 KFEIADAVQQAGATELV-VHGR 170 (312)
T ss_pred HHHHHHHHHhcCCCEEE-ECCC
Confidence 12444555556888886 6553
No 255
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=82.94 E-value=48 Score=32.86 Aligned_cols=138 Identities=21% Similarity=0.173 Sum_probs=71.7
Q ss_pred CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
.+.++-.+|- +|.-|... +.+..+..+++.++.||+.|++-.- .+. -+..+.++.+..+.+..++ .+
T Consensus 70 ~~~~~~~~~~---~~~~g~~~-~~~~~~~~v~~al~~Ga~~v~~~~~---~g~--~~~~~~~~~~~~i~~~~~~----~g 136 (258)
T TIGR01949 70 DVGLIIHLSA---STSLSPDP-NDKRIVTTVEDAIRMGADAVSIHVN---VGS--DTEWEQIRDLGMIAEICDD----WG 136 (258)
T ss_pred CCcEEEEEcC---CCCCCCCC-CcceeeeeHHHHHHCCCCEEEEEEe---cCC--chHHHHHHHHHHHHHHHHH----cC
Confidence 3445556652 34443221 1123455688899999999999642 111 1122333333333333333 37
Q ss_pred CeEEEeCC---------CHHH----HHHHHHcCCCEEecCCCCCCC-chHHHHHHhcCCCEEEEcCCCCCC-cccccccc
Q 038230 290 KLVSVDTF---------YSKV----ASEAVGKGAHIVNDVSAGQLD-PDMYKVVAGLKVPYVAMHMRGDPS-TMQNEENL 354 (480)
Q Consensus 290 ~pISIDT~---------~~~v----~~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~ 354 (480)
+|+-|+.+ .++. ++.|.+.|+|+|-- + ...+ +.+-.+++...+||++. .|+-. +
T Consensus 137 ~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt-~-~~~~~~~l~~~~~~~~iPVva~--GGi~~~~------- 205 (258)
T TIGR01949 137 VPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKT-P-YTGDIDSFRDVVKGCPAPVVVA--GGPKTNS------- 205 (258)
T ss_pred CCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEec-c-CCCCHHHHHHHHHhCCCcEEEe--cCCCCCC-------
Confidence 77777433 2223 34556679998873 3 2223 34445555567888763 34321 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 355 QYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 355 ~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
.+.+.+.++.+.++|..
T Consensus 206 ---------~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 206 ---------DREFLQMIKDAMEAGAA 222 (258)
T ss_pred ---------HHHHHHHHHHHHHcCCc
Confidence 13345666677778875
No 256
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=82.88 E-value=5.2 Score=41.05 Aligned_cols=149 Identities=19% Similarity=0.250 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCC-CCeEEEeCCCHHHHHHHHHc
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEME-GKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~-~~pISIDT~~~~v~~aaL~~ 308 (480)
+..++.++.++++|||+|=++- .....+|++.=-+-+.| +++.+++.. . .+.+=+|-.....+..-.+.
T Consensus 182 ~~~~~~~~~~~~~G~d~i~~~d----~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~cG~~~~~~~~l~~~ 255 (343)
T PF01208_consen 182 DFIIEYAKAQIEAGADGIFIFD----SSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHICGNTTPILDDLADL 255 (343)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE----TTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEETTHG-GGHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCcccccc----cccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEECCchHHHHHHHHhc
Confidence 3455778899999999998875 23457777654444444 444444431 1 23455666666688888888
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCC-CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDP-STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p-~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
|+++++ +.. ...+.+.+++++-.+++|-.- .| ..+. .--+++.+..++.++.. .-...+.|+-
T Consensus 256 g~d~~~-~~~---~~~~~~~~~~~~~~~~l~Gni-~~~~~l~--------gt~eei~~~v~~~i~~~---~~~~~gfIl~ 319 (343)
T PF01208_consen 256 GADVLS-VDE---KVDLAEAKRKLGDKIVLMGNI-DPVSLLF--------GTPEEIEEEVKRLIEEG---LAGGGGFILS 319 (343)
T ss_dssp S-SEEE-E-T---TS-HHHHHHHHTTSSEEEEEB--G-GGGG--------S-HHHHHHHHHHHHHHT---HCTSSSEEBE
T ss_pred CCCEEE-EcC---CCCHHHHHHHhCCCeEEECCC-Ccccccc--------CCHHHHHHHHHHHHHHh---cCCCCCEEEe
Confidence 999988 321 245678888888777776542 12 2222 11233333334444421 1123478999
Q ss_pred cCCCCc-cChhHHHHHHH
Q 038230 388 PGLGFS-KKAEHNLDILL 404 (480)
Q Consensus 388 PgiGf~-k~~~~~~~~lr 404 (480)
||-+.. .+..+|++.+-
T Consensus 320 ~gc~ip~~~p~eni~a~~ 337 (343)
T PF01208_consen 320 PGCGIPPDTPPENIKAMV 337 (343)
T ss_dssp BSS---TTS-HHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHH
Confidence 998864 44567766543
No 257
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=82.81 E-value=24 Score=36.08 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQS------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~ 299 (480)
|.++..+.+.++++.+.||.-|=|==+. ..++...++.++-.+++.-++++-. +..+.| |++-.
T Consensus 89 yG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~------~~d~~IiARTDa~~~ 162 (292)
T PRK11320 89 FGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART------DPDFVIMARTDALAV 162 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc------CCCeEEEEecCcccc
Confidence 3488889999999999999777663111 1123445777766666654443322 233444 77643
Q ss_pred HHHHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230 300 KVASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 300 ~v~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm 339 (480)
.-+++|++ +|||+|- +-+.+..+++..++++.++|+++.
T Consensus 163 ~g~deAI~Ra~aY~eAGAD~if-i~~~~~~~~i~~~~~~~~~Pl~~n 208 (292)
T PRK11320 163 EGLDAAIERAQAYVEAGADMIF-PEAMTELEMYRRFADAVKVPILAN 208 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHHHHHHhcCCCEEEE
Confidence 33334433 5999998 555553477888888889998653
No 258
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.53 E-value=18 Score=35.28 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCEE---EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcCC
Q 038230 236 AVSQVRLMISEGADMI---DIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKGA 310 (480)
Q Consensus 236 a~~~A~~~v~~GAdiI---DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G~ 310 (480)
.++.|+.+.+.|++.| |..+.. ++.......|+.+.+. .++|+.|+ -.+.+-++.++++|+
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~-----------~~~~~~~~~i~~i~~~---~~~~l~v~GGi~~~~~~~~~~~~Ga 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF-----------EGERKNAEAIEKIIEA---VGVPVQLGGGIRSAEDAASLLDLGV 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh-----------cCCcccHHHHHHHHHH---cCCcEEEcCCcCCHHHHHHHHHcCC
Confidence 5667888889998655 554311 1111222334455554 37899995 467788999999999
Q ss_pred CEEecCCCCCCCc-hHHHHHHhcCC-CEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 311 HIVNDVSAGQLDP-DMYKVVAGLKV-PYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 311 ~iINdVsg~~~d~-~m~~l~~~~~~-~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
+-+-==+....++ .+.+++..++- .+++ +...+.+....... ++. .....+.+..+.+.|+. .|++=
T Consensus 100 ~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~----~~~----~~~~~~~~~~~~~~G~~--~i~~~ 169 (241)
T PRK13585 100 DRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWT----EKT----GYTPVEAAKRFEELGAG--SILFT 169 (241)
T ss_pred CEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCc----ccC----CCCHHHHHHHHHHcCCC--EEEEE
Confidence 8553111111234 35666677753 2322 22111111110000 000 00123455566788987 56652
Q ss_pred cC--CCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 388 PG--LGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 388 Pg--iGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.- -|..+ ..++++++++ +....|++.+
T Consensus 170 ~~~~~g~~~--g~~~~~i~~i~~~~~iPvia~ 199 (241)
T PRK13585 170 NVDVEGLLE--GVNTEPVKELVDSVDIPVIAS 199 (241)
T ss_pred eecCCCCcC--CCCHHHHHHHHHhCCCCEEEe
Confidence 21 12211 1357777777 4568998875
No 259
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=82.38 E-value=14 Score=36.44 Aligned_cols=99 Identities=23% Similarity=0.301 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF------ 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~------ 297 (480)
.++++..+.|+.. ++++++||||+.-..| |+... .+.+++..+++++++. ++|||+=.+
T Consensus 82 ~~~~~~~~aa~~~-~~~~~~ielN~gCP~~~v~~~g~G~~Ll---~~p~~l~eiv~avr~~----~~pVsvKir~g~~~~ 153 (233)
T cd02911 82 SSLEPLLNAAALV-AKNAAILEINAHCRQPEMVEAGAGEALL---KDPERLSEFIKALKET----GVPVSVKIRAGVDVD 153 (233)
T ss_pred CCHHHHHHHHHHH-hhcCCEEEEECCCCcHHHhcCCcchHHc---CCHHHHHHHHHHHHhc----CCCEEEEEcCCcCcC
Confidence 4677777777766 4467999999742222 22111 2356777888888864 788887332
Q ss_pred CHHHHHHHHHcCCCEEecCCCCCCC-chHHHHHHhc--CCCEEE
Q 038230 298 YSKVASEAVGKGAHIVNDVSAGQLD-PDMYKVVAGL--KVPYVA 338 (480)
Q Consensus 298 ~~~v~~aaL~~G~~iINdVsg~~~d-~~m~~l~~~~--~~~vVl 338 (480)
..+.++.+.++|+++|. ++..... ..-.+.+++. +.+||.
T Consensus 154 ~~~la~~l~~aG~d~ih-v~~~~~g~~ad~~~I~~i~~~ipVIg 196 (233)
T cd02911 154 DEELARLIEKAGADIIH-VDAMDPGNHADLKKIRDISTELFIIG 196 (233)
T ss_pred HHHHHHHHHHhCCCEEE-ECcCCCCCCCcHHHHHHhcCCCEEEE
Confidence 23455566677999875 4432211 1123444443 566664
No 260
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=82.27 E-value=23 Score=33.38 Aligned_cols=86 Identities=22% Similarity=0.160 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS 317 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs 317 (480)
+++...++.||+.|=.++. . . ++++..+.. +.++-+.-.+++.+.+|+++|+|+|.=..
T Consensus 67 ~~~~~a~~~Ga~~i~~p~~------~-----~------~~~~~~~~~----~~~~i~gv~t~~e~~~A~~~Gad~i~~~p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVSPGL------D-----P------EVVKAANRA----GIPLLPGVATPTEIMQALELGADIVKLFP 125 (190)
T ss_pred HHHHHHHHcCCCEEEcCCC------C-----H------HHHHHHHHc----CCcEECCcCCHHHHHHHHHCCCCEEEEcC
Confidence 3667778899999965431 1 1 234444443 66777888899999999999999998432
Q ss_pred CCCCCchHHHHHHhcCCCEEEEcCCCC
Q 038230 318 AGQLDPDMYKVVAGLKVPYVAMHMRGD 344 (480)
Q Consensus 318 g~~~d~~m~~l~~~~~~~vVlmh~~g~ 344 (480)
....-.+.++.++..--.+-++...|+
T Consensus 126 ~~~~g~~~~~~l~~~~~~~p~~a~GGI 152 (190)
T cd00452 126 AEAVGPAYIKALKGPFPQVRFMPTGGV 152 (190)
T ss_pred CcccCHHHHHHHHhhCCCCeEEEeCCC
Confidence 222124556665543212334455565
No 261
>PRK01060 endonuclease IV; Provisional
Probab=82.16 E-value=54 Score=32.43 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe---EEE--------eCCCHHH
Q 038230 233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL---VSV--------DTFYSKV 301 (480)
Q Consensus 233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p---ISI--------DT~~~~v 301 (480)
.++++ +...+.|.|-+++-..+.......-..+++++.++..+ .+. ++. +++ -+.++++
T Consensus 14 ~~~~l---~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~---~~~----gl~~~~~~~h~~~~~nl~~~d~~~ 83 (281)
T PRK01060 14 LEGAV---AEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC---EKY----GISPEDILVHAPYLINLGNPNKEI 83 (281)
T ss_pred HHHHH---HHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH---HHc----CCCCCceEEecceEecCCCCCHHH
Confidence 44444 55567899999997654221111112345566555444 332 333 332 2334444
Q ss_pred HHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHH--HHCCC
Q 038230 302 ASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDA--ELSGI 379 (480)
Q Consensus 302 ~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a--~~~Gi 379 (480)
.+++++. -.+.+++|++.||++|++|....+... ..++.. +.+.+.++.+ ...|+
T Consensus 84 r~~s~~~-------------~~~~i~~A~~lga~~vv~h~G~~~~~~------~~~~~~----~~~~e~l~~l~~~~~gv 140 (281)
T PRK01060 84 LEKSRDF-------------LIQEIERCAALGAKLLVFHPGSHLGDI------DEEDCL----ARIAESLNEALDKTQGV 140 (281)
T ss_pred HHHHHHH-------------HHHHHHHHHHcCCCEEEEcCCcCCCCC------cHHHHH----HHHHHHHHHHHhcCCCC
Confidence 4444311 135678889999999988864322110 011122 3333333333 34677
Q ss_pred CCCCEEEecCCCC----ccChhHHHHHHHhc
Q 038230 380 PAWRIIIDPGLGF----SKKAEHNLDILLGL 406 (480)
Q Consensus 380 ~~~~IilDPgiGf----~k~~~~~~~~lr~l 406 (480)
+|.+-|.-++ +.+.++-.++++.+
T Consensus 141 ---~l~iEn~~~~~~~~~~~~~~~~~l~~~v 168 (281)
T PRK01060 141 ---TIVLENTAGQGSELGRRFEELARIIDGV 168 (281)
T ss_pred ---EEEEecCCCCCCcccCCHHHHHHHHHhc
Confidence 4888885443 34555556666655
No 262
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=82.13 E-value=15 Score=37.17 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHH
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELER 273 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~r 273 (480)
..+++.|.+++++| .+.-|| ++.||.. +||. +.|+.
T Consensus 107 ~~~lelA~k~v~eg-~avaiG-EvGrPHy-pVs~-~v~~~ 142 (285)
T COG1831 107 RHALELAAKLVEEG-KAVAIG-EVGRPHY-PVSE-EVWEA 142 (285)
T ss_pred HHHHHHHHHHHhcc-ceeeee-ccCCCCC-CCCH-HHHHH
Confidence 46778899999999 666666 8999975 4553 44543
No 263
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=81.78 E-value=56 Score=32.20 Aligned_cols=165 Identities=10% Similarity=0.071 Sum_probs=89.6
Q ss_pred ccccccCCCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 038230 200 IGNLLWDWSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLE 279 (480)
Q Consensus 200 ~~~~~~~~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~ 279 (480)
+++..++- .+|+|...| +. .+.++++.+++.....|||++.+=...-.. .+...+..+++
T Consensus 11 v~~~~~g~-~~p~Icvpi--~~---------~~~ee~~~~~~~~~~~~aDivE~RlD~l~~--------~~~~~~~~~~~ 70 (229)
T PRK01261 11 IGKFVIGN-MQPIVVESI--FF---------KDIKEMKERFKTKVLSDKNLYEIRFDLFHD--------HSIESEPEIIS 70 (229)
T ss_pred EeCeEeCC-CCcEEEEEe--CC---------CCHHHHHHHHHHhhcCCCCEEEEEeeccCC--------CChHHHHHHHH
Confidence 34444433 467775543 43 578999999999999999998876532221 11222334444
Q ss_pred HHHcCCcCCCCeEEEeCC-CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhh
Q 038230 280 AVLTMPEMEGKLVSVDTF-YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDD 358 (480)
Q Consensus 280 ~l~~~~~~~~~pISIDT~-~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~ 358 (480)
.+++.. ..+.+.+=+- +.+..+++++.+++++ ||--.. ..++ .+++.++.+|+.+- +|.
T Consensus 71 ~l~~~~--~p~I~T~R~~~~~~~l~~a~~~~~d~v-DIEl~~-~~~~--~~~~~~~kvIvS~H--tp~------------ 130 (229)
T PRK01261 71 ALNEMD--IDYIFTYRGVDARKYYETAIDKMPPAV-DLDINL-IGKL--EFRPRNTMLMVSYH--TNN------------ 130 (229)
T ss_pred HHhhcC--CCEEEEEcCCCHHHHHHHHHhhCCCEE-EEEccc-chhh--hhhcCCCeEEEEeC--CCC------------
Confidence 454320 1233333221 2456677777678886 464321 1222 23567888888643 331
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230 359 VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL 414 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil 414 (480)
.+.+.++++.+.+.|-+--+|..=| ++..+.+..+..+ +..+.|++
T Consensus 131 -----~eeL~~~l~~m~~~gaDI~KiAvmp-----~~~~Dvl~~l~~~~~~~~~~~~p~i 180 (229)
T PRK01261 131 -----SDNMPAILDIMNEKNPDYVKVACNY-----NDNKKFVDDLQYILMKKDEKYKPIV 180 (229)
T ss_pred -----HHHHHHHHHHHHHhCCCEEEEEeCC-----CChHHHHHHHHHHHHHHhcCCCCEE
Confidence 1345577777777774323666633 4444445444332 34567753
No 264
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=81.77 E-value=67 Score=33.15 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=68.8
Q ss_pred CCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----HHHHHHHHHcCCCEEecCCCCCC
Q 038230 247 GADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----SKVASEAVGKGAHIVNDVSAGQL 321 (480)
Q Consensus 247 GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----~~v~~aaL~~G~~iINdVsg~~~ 321 (480)
|+++|=|=-.+- . ... .++++++...+++.+.+.. +.++.+=|+. .......++..++.|. +.--..
T Consensus 173 G~~~IQiDEP~L~~---~~~-~~~~~~~~~~a~~~~~~~~---~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~-ld~~~~ 244 (326)
T PRK08575 173 VVDAVEIHEPSIFA---KGI-KRDTLEKLPEVYKTMAKNV---NIEKHLMTYFEINNLKRLDILFSLPVTYFG-IDVIEN 244 (326)
T ss_pred CCCEEEecCcceeC---CCC-CHHHHHHHHHHHHHHHhcC---CCCEEEECCCCCccccHHHHHhcCCCcEEE-EEecCC
Confidence 999998864221 1 111 2356788888898887652 5678888872 2467777777777664 211111
Q ss_pred CchHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCc
Q 038230 322 DPDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFS 393 (480)
Q Consensus 322 d~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~ 393 (480)
.+. +..+.++ +-.+.+=-.+|....++. . +...++++++.+ +++++++++|-.|+.
T Consensus 245 ~~~-l~~~~~~~~~k~l~~GviD~rn~~vE~---------~----eev~~~i~~~~~--~~~~~l~v~pdcgl~ 302 (326)
T PRK08575 245 LKK-LGRVYTYLKGRKVYLGILNARNTKMEK---------I----STIRRIVNKVKR--KGVSDIIVGNNTLFD 302 (326)
T ss_pred hhH-HHHHHhhCCCCEEEEEEEeCCCCCCCC---------H----HHHHHHHHHHHh--cCCCeEEEeCCCCcc
Confidence 223 3333442 211221111221112211 2 445678888877 678899999976653
No 265
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=81.60 E-value=4.7 Score=41.87 Aligned_cols=124 Identities=21% Similarity=0.296 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH------HHHHHHHHcCCcCCCCeEEEeCCCH---------
Q 038230 235 AAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL------IPVLEAVLTMPEMEGKLVSVDTFYS--------- 299 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl------~~vi~~l~~~~~~~~~pISIDT~~~--------- 299 (480)
.+++.|-.+...|||-+-||. +.|...|+.-.. ..-|+.|.+.....-+.||||-.+-
T Consensus 337 palEVA~~YFRSGADKvSIGs-------DAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk 409 (541)
T KOG0623|consen 337 PALEVAAEYFRSGADKVSIGS-------DAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTK 409 (541)
T ss_pred hhHHHHHHHHhcCCceeeech-------hHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCc
Confidence 588999999999999999993 223333332211 0123333332111257788875321
Q ss_pred -----------------------------------HHH--HHHHHcCCCEEecCCC----CCCCchHHHHHHhc-CCCEE
Q 038230 300 -----------------------------------KVA--SEAVGKGAHIVNDVSA----GQLDPDMYKVVAGL-KVPYV 337 (480)
Q Consensus 300 -----------------------------------~v~--~aaL~~G~~iINdVsg----~~~d~~m~~l~~~~-~~~vV 337 (480)
|.. -+||.+|--++|=+.. .-+|-++.+++++. ++|||
T Consensus 410 ~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieLv~lvkdsV~IPVI 489 (541)
T KOG0623|consen 410 YKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNKGYDIELVKLVKDSVGIPVI 489 (541)
T ss_pred ceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCCCcchhHHHHhhcccCCceE
Confidence 222 2344456667775543 22457899999985 78998
Q ss_pred EEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 338 AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 338 lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
...--|+|+..+ | .|.+...+.|..+||
T Consensus 490 ASSGAG~P~HFe------------E--vF~kT~adAaLaAGi 517 (541)
T KOG0623|consen 490 ASSGAGTPDHFE------------E--VFEKTNADAALAAGI 517 (541)
T ss_pred ecCCCCCcHHHH------------H--HHHhcCchhhhhccc
Confidence 877677775322 2 244566777888887
No 266
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.52 E-value=66 Score=32.80 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCC-
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS---------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFY- 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS---------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~- 298 (480)
.+++.+.+.++++++.||.-|=|==+. +......++.+|-.+++.-+.++ +.. .+++| -.|++-
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~~---~~~~IiARTDa~~~ 164 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QTT---EDFMIIARVESLIL 164 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-ccC---CCeEEEEecccccc
Confidence 588899999999999999998881100 00012346665555555444333 222 24444 336552
Q ss_pred H----HHHHH---HHHcCCCEEecCCCCCCCchHHHHHHhcC-----CCEEEEc
Q 038230 299 S----KVASE---AVGKGAHIVNDVSAGQLDPDMYKVVAGLK-----VPYVAMH 340 (480)
Q Consensus 299 ~----~v~~a---aL~~G~~iINdVsg~~~d~~m~~l~~~~~-----~~vVlmh 340 (480)
. ++++. ..++|||+|-=..+....+++..++++.. .|++++.
T Consensus 165 ~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 165 GKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 2 33333 34469999983322332367888888764 4776543
No 267
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=81.45 E-value=48 Score=31.17 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC---HHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY---SKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~---~~v~~a 304 (480)
..+++...+.++.+.+.|||.|-++... .-|+.. ++ + ..++.+++. .+.|+.+|-+- .+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~-~~----~----~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~ 74 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLT-FG----P----PVLEALRKY---TDLPIDVHLMVENPDRYIED 74 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc-cC----H----HHHHHHHhc---CCCcEEEEeeeCCHHHHHHH
Confidence 3567788899999999999999998321 112221 11 1 234445543 24454443222 345667
Q ss_pred HHHcCCCEEecCCCCCCC--chHHHHHHhcCCCEEEE
Q 038230 305 AVGKGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 305 aL~~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlm 339 (480)
+.++|++.|- +-++..+ ...++.+++++..++++
T Consensus 75 ~~~~gadgv~-vh~~~~~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 75 FAEAGADIIT-VHPEASEHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred HHHcCCCEEE-EccCCchhHHHHHHHHHHcCCcEEEE
Confidence 7788999754 2233212 35667788889887765
No 268
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.43 E-value=24 Score=35.94 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----ch----HHHHHHhcCCCEEEEcC
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----PD----MYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~~----m~~l~~~~~~~vVlmh~ 341 (480)
+..+++..++.. -...++++++.+.+++.+++ +.++|-.++-...+ +. +..++.++.+||++--+
T Consensus 6 ~k~iL~~A~~~~---yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLD 82 (284)
T PRK12857 6 VAELLKKAEKGG---YAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLD 82 (284)
T ss_pred HHHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 344555555541 35789999999998888875 88888878754321 22 34466788999887444
Q ss_pred CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 342 ~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
.|.. .+.+.+|.+.|++ .|-+| |-.-+.++|++.-+++ +..|+.+
T Consensus 83 H~~~----------------------~e~i~~ai~~Gft--SVM~D---gS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 83 HGTD----------------------FEQVMKCIRNGFT--SVMID---GSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred CCCC----------------------HHHHHHHHHcCCC--eEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 4321 1345677778997 99999 4445678888887776 3455554
No 269
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=81.41 E-value=6.7 Score=37.56 Aligned_cols=105 Identities=25% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCC--C
Q 038230 223 SFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VSVDTF--Y 298 (480)
Q Consensus 223 SFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~--~ 298 (480)
+|.-|. .+.+..+..+++.++.|||-||+-..-...... ..++-++.+ ..+++... +.| +.+.+. +
T Consensus 60 ~fp~g~--~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~--~~~~~~~ei----~~v~~~~~--g~~lkvI~e~~~l~ 129 (203)
T cd00959 60 GFPLGA--TTTEVKVAEAREAIADGADEIDMVINIGALKSG--DYEAVYEEI----AAVVEACG--GAPLKVILETGLLT 129 (203)
T ss_pred ecCCCC--CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCC--CHHHHHHHH----HHHHHhcC--CCeEEEEEecCCCC
Confidence 444554 445677778999999999999996421110000 112223333 33333321 333 334333 3
Q ss_pred HH----HHHHHHHcCCCEEecCCCCC------CC-chHHHHHHhcCCCEEE
Q 038230 299 SK----VASEAVGKGAHIVNDVSAGQ------LD-PDMYKVVAGLKVPYVA 338 (480)
Q Consensus 299 ~~----v~~aaL~~G~~iINdVsg~~------~d-~~m~~l~~~~~~~vVl 338 (480)
++ +.+.|.++|+|+|---+|.. .+ ..|.+.++ ..+++.+
T Consensus 130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~ik~ 179 (203)
T cd00959 130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGVKA 179 (203)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEEE
Confidence 33 35556667999999777653 22 23555555 4566655
No 270
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=81.35 E-value=45 Score=34.04 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQS------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKV 301 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eS------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v 301 (480)
|.++..+.+.++++++.||.-|=|-=+. .-++...++.++-.+++.-+.++-. . .++.| -.|++...-
T Consensus 84 yG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~-~---~d~~IiARTDa~~~~g 159 (285)
T TIGR02317 84 FGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR-D---EDFVIIARTDARAVEG 159 (285)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc-C---CCEEEEEEcCcccccC
Confidence 4557888899999999999888774221 1123446777776777654443322 1 13222 227765444
Q ss_pred HHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230 302 ASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH 340 (480)
Q Consensus 302 ~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh 340 (480)
+++|++ +|||+|- +-+.+..+++..++++.+.|+++..
T Consensus 160 ~deAI~Ra~ay~~AGAD~vf-i~g~~~~e~i~~~~~~i~~Pl~~n~ 204 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIF-PEALTSLEEFRQFAKAVKVPLLANM 204 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEE-eCCCCCHHHHHHHHHhcCCCEEEEe
Confidence 444444 4999998 5555534778889998888886533
No 271
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=81.24 E-value=8.3 Score=43.42 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCc-cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCHHH
Q 038230 226 DGGK-FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYSKV 301 (480)
Q Consensus 226 dgg~-~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~~v 301 (480)
|.++ ..+.+--++.|.+++++|++|+-|--...- . .-|-.++ +|.+|++.+ +++||-| ||.-..|
T Consensus 709 dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~-----l--KP~aa~l--Li~alRdk~--PdlPiHvHtHDtsGagV 777 (1176)
T KOG0369|consen 709 DPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGV-----L--KPEAAKL--LIGALRDKF--PDLPIHVHTHDTSGAGV 777 (1176)
T ss_pred CcccccccHHHHHHHHHHHHhccCeEEeehhhhcc-----c--CHHHHHH--HHHHHHhhC--CCCceEEeccCCccHHH
Confidence 4444 568888999999999999999988632111 1 1233344 478889875 6999988 5555554
Q ss_pred --HHHHHHcCCCE----EecCCCCCCCchHHHHHHh
Q 038230 302 --ASEAVGKGAHI----VNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 302 --~~aaL~~G~~i----INdVsg~~~d~~m~~l~~~ 331 (480)
|.+|+++|||. ++|.||.+..|.|-.+++.
T Consensus 778 AsMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAs 813 (1176)
T KOG0369|consen 778 ASMLACALAGADVVDVAVDSMSGMTSQPSMGALVAS 813 (1176)
T ss_pred HHHHHHHHcCCceeeeecccccccccCCchhhhhhh
Confidence 56788899996 4788887766777666553
No 272
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.18 E-value=53 Score=31.56 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=60.0
Q ss_pred CCeEEEeC---CCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230 289 GKLVSVDT---FYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS 365 (480)
Q Consensus 289 ~~pISIDT---~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~ 365 (480)
.+.+.++. ...+.++.+.++|++.|- +... ..+++.+.+++++.+++..-. +
T Consensus 57 ~v~~i~~~~~~~~~~~~~~~~~~g~d~v~-l~~~-~~~~~~~~~~~~~i~~i~~v~---~-------------------- 111 (236)
T cd04730 57 GVNLLVPSSNPDFEALLEVALEEGVPVVS-FSFG-PPAEVVERLKAAGIKVIPTVT---S-------------------- 111 (236)
T ss_pred EEeEecCCCCcCHHHHHHHHHhCCCCEEE-EcCC-CCHHHHHHHHHcCCEEEEeCC---C--------------------
Confidence 34555554 566788899999999774 3333 357788888888877765321 0
Q ss_pred HHHHHHHHHHHCCCCCCCEEEecC----CCCccChhHHHHHHHhcc-cCCCcEEEe
Q 038230 366 ELYSKVRDAELSGIPAWRIIIDPG----LGFSKKAEHNLDILLGLA-ASHAPILIG 416 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~IilDPg----iGf~k~~~~~~~~lr~l~-~~g~Pil~G 416 (480)
.+.+..+.+.|.+ -|++|+. .+.... ...++.+++++ ..+.|++++
T Consensus 112 --~~~~~~~~~~gad--~i~~~~~~~~G~~~~~~-~~~~~~i~~i~~~~~~Pvi~~ 162 (236)
T cd04730 112 --VEEARKAEAAGAD--ALVAQGAEAGGHRGTFD-IGTFALVPEVRDAVDIPVIAA 162 (236)
T ss_pred --HHHHHHHHHcCCC--EEEEeCcCCCCCCCccc-cCHHHHHHHHHHHhCCCEEEE
Confidence 0223445567764 5788883 222211 13466777763 468899875
No 273
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=81.06 E-value=60 Score=32.08 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHHH-
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAVG- 307 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL~- 307 (480)
++++..+.++++++.|...+-|-.. . +++++++++ +++++... .++.|.+|.. +++.+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg-----~---~~~~d~~~v----~~vr~~~g-~~~~l~vDan~~~~~~~a~~~~~~ 151 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVG-----R---DPARDVAVV----AALREAVG-DDAELRVDANRGWTPKQAIRALRA 151 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecC-----C---CHHHHHHHH----HHHHHhcC-CCCEEEEeCCCCcCHHHHHHHHHH
Confidence 5788899999999999999988642 1 134556654 44554321 2689999974 3444433322
Q ss_pred ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
.|.++|-.-......+.+..+.+..++|+++--+- .+. ..+.+ .+.+.+++ =|
T Consensus 152 l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~---~~~----------------~~~~~---~i~~~~~d--~v 207 (265)
T cd03315 152 LEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESA---FTP----------------HDAFR---ELALGAAD--AV 207 (265)
T ss_pred HHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCC---CCH----------------HHHHH---HHHhCCCC--EE
Confidence 38888876543221256777888888897762211 000 11121 22334454 68
Q ss_pred EEecCC-CCccChhHHHHHHHhcccCCCcEEEe
Q 038230 385 IIDPGL-GFSKKAEHNLDILLGLAASHAPILIG 416 (480)
Q Consensus 385 ilDPgi-Gf~k~~~~~~~~lr~l~~~g~Pil~G 416 (480)
.+||.. |- ....+++.+..+..|+++.+|
T Consensus 208 ~~k~~~~GG---i~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 208 NIKTAKTGG---LTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred EEecccccC---HHHHHHHHHHHHHcCCcEEec
Confidence 899853 21 122333443335579999887
No 274
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=81.02 E-value=10 Score=37.58 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G 309 (480)
+-++.|+.+-++||| ++||-+.+ -+ -+-+..+|+...+. ..+|+++= -...+-++.-|.+|
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~--~g---------r~~~~~vv~r~A~~---vfiPltVGGGI~s~eD~~~ll~aG 96 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASS--EG---------RETMLDVVERVAEQ---VFIPLTVGGGIRSVEDARKLLRAG 96 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEeccccc--cc---------chhHHHHHHHHHhh---ceeeeEecCCcCCHHHHHHHHHcC
Confidence 568899999999998 67998633 22 23455667777776 47898884 57888999999999
Q ss_pred CCEEecCCC-CCCCchHHH-HHHhcCCCEEEEc--CC----CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 310 AHIVNDVSA-GQLDPDMYK-VVAGLKVPYVAMH--MR----GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 310 ~~iINdVsg-~~~d~~m~~-l~~~~~~~vVlmh--~~----g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
||=|- |+. .-.+|+++. .+.++|...|+.. .+ |.+..-+-...-..++.--+ ..+-..++++.|--
T Consensus 97 ADKVS-INsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d----~~~Wa~~~e~~GAG- 170 (256)
T COG0107 97 ADKVS-INSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLD----AVEWAKEVEELGAG- 170 (256)
T ss_pred CCeee-eChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcC----HHHHHHHHHHcCCc-
Confidence 99553 322 233677655 4555786655543 21 21110000000000010001 12334566788887
Q ss_pred CCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILI 415 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~ 415 (480)
-|+|--.=.=|...-..+++++.+ ....+|++.
T Consensus 171 -EIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIA 204 (256)
T COG0107 171 -EILLTSMDRDGTKAGYDLELTRAVREAVNIPVIA 204 (256)
T ss_pred -eEEEeeecccccccCcCHHHHHHHHHhCCCCEEe
Confidence 677764211122222237777777 457899875
No 275
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=80.89 E-value=79 Score=33.31 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHcCCcCCCCeEE--EeCCCHHHHHH
Q 038230 234 EAAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIP----VLEAVLTMPEMEGKLVS--VDTFYSKVASE 304 (480)
Q Consensus 234 e~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~----vi~~l~~~~~~~~~pIS--IDT~~~~v~~a 304 (480)
+..++.++.|++.||+ ++.+.. | .+..+|++.=-+.+.| +++.+++. +.++. ++-.....++.
T Consensus 214 d~~i~~~~~~ieaGa~~~i~i~~~~-s---~~~~lsp~~f~ef~~P~~k~i~~~i~~~----g~~~ilh~cG~~~~~l~~ 285 (378)
T cd03308 214 PLMIKMGTATAPAPYPGPVFTPIPL-H---LPPFLRPKQFEKFYWPSFKKVVEGLAAR----GQRIFLFFEGDWERYLEY 285 (378)
T ss_pred HHHHHHHHHHHHhCCCCceEEEecc-c---ccCccCHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEcCCCcHHHHHH
Confidence 4566788999999999 455532 1 2346777553333334 44455443 44444 34444445666
Q ss_pred HHHcCCC-EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230 305 AVGKGAH-IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383 (480)
Q Consensus 305 aL~~G~~-iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~ 383 (480)
-.+.|++ +++.... ..+.+..+.+|-.++++-+- .|..+.. ...+++.+...+.++.+ .+...
T Consensus 286 l~~~g~~~v~~~~~~----~dl~~ak~~~g~~~~i~GNl-~p~~L~~-------Gt~e~i~~~v~~~l~~~----~~~~g 349 (378)
T cd03308 286 LQELPKGKTVGLFEY----GDPKKVKEKLGDKKCIAGGF-PTTLLKY-------GTPEECIDYVKELLDTL----APGGG 349 (378)
T ss_pred HHhcCCCcEEEcCCC----CCHHHHHHHhCCCEEEEcCC-CCHHHhc-------CCHHHHHHHHHHHHHHh----CCCCC
Confidence 6667887 7765542 35566666777667877653 2222221 01123333334444433 32235
Q ss_pred EEEecCCCCc-cCh--hHHHHHHH
Q 038230 384 IIIDPGLGFS-KKA--EHNLDILL 404 (480)
Q Consensus 384 IilDPgiGf~-k~~--~~~~~~lr 404 (480)
-|+-||.|.. .+. .+|++.+-
T Consensus 350 fIl~~gcgi~p~tp~~~eNi~a~v 373 (378)
T cd03308 350 FIFGTDKPIISADDAKPENLIAVI 373 (378)
T ss_pred EEEeCCCcCCCCCCCChHHHHHHH
Confidence 8999998874 333 56766543
No 276
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=80.70 E-value=70 Score=32.60 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=96.7
Q ss_pred EEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 213 imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
=+|-+|+.- .+.+....+.-.+.++-+|=--.+++... .+ .+.+.+.++.+.+. .++||
T Consensus 17 AV~AfN~~n-----------~e~~~avi~AAee~~sPvIlq~s~~~~~~---~~----~~~~~~~~~~~a~~---~~VPV 75 (282)
T TIGR01858 17 AVPAFNIHN-----------LETIQAVVETAAEMRSPVILAGTPGTFKH---AG----TEYIVALCSAASTT---YNMPL 75 (282)
T ss_pred eEEEEEeCC-----------HHHHHHHHHHHHHhCCCEEEEeCccHHhh---CC----HHHHHHHHHHHHHH---CCCCE
Confidence 366777764 34444444444455666554444444321 11 44456677777765 36776
Q ss_pred EE--e-CCCHHHHHHHHHcCCC-EEecCCCCCCC------chHHHHHHhcCCCEE--EEcCCCCCCccc-cccccchhhH
Q 038230 293 SV--D-TFYSKVASEAVGKGAH-IVNDVSAGQLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQ-NEENLQYDDV 359 (480)
Q Consensus 293 SI--D-T~~~~v~~aaL~~G~~-iINdVsg~~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~-~~~~~~~~~v 359 (480)
+| | ..+.+.++.|++.|.. +.-|-|...++ .++.++|..+|++|= +=|..|.-.... ......|.++
T Consensus 76 alHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p 155 (282)
T TIGR01858 76 ALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP 155 (282)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCH
Confidence 66 6 5688999999999976 44455554433 357888888888764 223322211100 0000113332
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC----cc-ChhHHHHHHHhc-ccCCCcEEE-eec
Q 038230 360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF----SK-KAEHNLDILLGL-AASHAPILI-GPS 418 (480)
Q Consensus 360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf----~k-~~~~~~~~lr~l-~~~g~Pil~-G~S 418 (480)
++..+..++-|++ .|=+.+|- -| .+.-++++|++| +..++|+.+ |-|
T Consensus 156 --------eea~~Fv~~TgvD----~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgS 209 (282)
T TIGR01858 156 --------QEAKEFVEATGVD----SLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGAS 209 (282)
T ss_pred --------HHHHHHHHHHCcC----EEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCC
Confidence 2333334567886 55565553 22 245568889988 456899865 665
No 277
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=80.53 E-value=30 Score=36.15 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCcCCC--CeEEEeCC--------CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230 271 LERLIPVLEAVLTMPEMEG--KLVSVDTF--------YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH 340 (480)
Q Consensus 271 ~~rl~~vi~~l~~~~~~~~--~pISIDT~--------~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh 340 (480)
...+.++.+..++. + +++.+-.- -++.+..|+..|++=|-=-.....++++++.+++.++++=+++
T Consensus 178 ~~~f~~~f~~ar~~----g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEvCP 253 (345)
T cd01321 178 LLDFLPQLLWFPKQ----CAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVCP 253 (345)
T ss_pred HHHHHHHHHHHHHh----CCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEECc
Confidence 44566777777765 5 78777443 2456667776676655322222347999999999999998877
Q ss_pred CCCC-CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE---ecCCCCcc-ChhHHHHHHHh
Q 038230 341 MRGD-PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII---DPGLGFSK-KAEHNLDILLG 405 (480)
Q Consensus 341 ~~g~-p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k-~~~~~~~~lr~ 405 (480)
.... .... ..+...=+.++.++|++ +.+ ||++ |+. +..+.+.++.+
T Consensus 254 tSN~~~~~v---------------~~~~~HPl~~ll~~Gv~---vtinTDDp~~-f~t~~l~~Ey~~~~~ 304 (345)
T cd01321 254 ISNQVLGLV---------------SDLRNHPAAALLARGVP---VVISSDDPGF-WGAKGLSHDFYQAFM 304 (345)
T ss_pred chhhhhccc---------------cchhhChHHHHHHCCCe---EEEeCCCcch-hCCCCchHHHHHHHH
Confidence 6311 1000 01122346677889996 777 7766 666 77666666654
No 278
>PF14385 DUF4416: Domain of unknown function (DUF4416)
Probab=80.48 E-value=9.8 Score=35.68 Aligned_cols=87 Identities=24% Similarity=0.250 Sum_probs=61.6
Q ss_pred eeEEEEeCCCcccHHHHHHHHHHHHHhcCCcEEEeeCcEEeCCCCCCCCcccee---------eeeeeccCCCHHHH---
Q 038230 44 QEVVIAMGSNVGDRLCNFNEALQLMKKLGVNITRHGCLYETEPAYVTDQPRFLN---------SAVRGVTKLGPHEL--- 111 (480)
Q Consensus 44 ~~~~l~LGSN~gd~~~~i~~A~~~L~~~~~~i~~~S~~y~T~P~g~~~q~~F~N---------~v~~~~T~l~p~~L--- 111 (480)
-..++++=+| +-+..+..+...|.+.++.+ .|+|+|+.+. .++|+| ..+.++.-.+|++|
T Consensus 5 a~l~~~v~~~--~~~~~~~~v~~~L~~~fG~i-----~~~S~~~pF~-~t~YY~~EmG~~l~r~~~sF~~li~~~~L~~i 76 (164)
T PF14385_consen 5 AKLFIAVLSN--DDDEWLEEVKPKLEKKFGPI-----DYESPPFPFD-YTDYYNKEMGPGLKRRFISFKRLIHPEELADI 76 (164)
T ss_pred eEEEEEEeec--chHHHHHHHHHHHHHhhCch-----heecCCCCCC-cccccchhcCCCceEEEEEEcccCCHHHHHHH
Confidence 3556677677 24789999999999998877 3566666654 566664 56777777777765
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccchhhcccC
Q 038230 112 LGVLKKIEKDMGRTNGIRHGPRPIDLDILFYG 143 (480)
Q Consensus 112 l~~lk~IE~~~GR~r~~~~~~r~iDiDIl~~~ 143 (480)
...+.+||+.+.. .|.|++.||-=...
T Consensus 77 K~~tn~iE~~~~~-----~g~R~VNiDPGYl~ 103 (164)
T PF14385_consen 77 KLETNEIEKEFAK-----DGKRRVNIDPGYLT 103 (164)
T ss_pred HHHHHHHHHHHHh-----cCCceEEeCceecc
Confidence 5678899999985 33477777754443
No 279
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.41 E-value=42 Score=36.68 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-EeCCCHHHHHHHHHcCCCEEe
Q 038230 237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-IDT~~~~v~~aaL~~G~~iIN 314 (480)
.++++.|++.|+++|-+-. +... ...+...++.+++.. .++||. =+-..++.++.+.++|++.|.
T Consensus 230 ~e~a~~L~~agvdvivvD~--a~g~---------~~~vl~~i~~i~~~~--p~~~vi~g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDT--AHGH---------SEGVLDRVREIKAKY--PDVQIIAGNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhCCCEEEEEC--CCCc---------chhHHHHHHHHHhhC--CCCCEEEeccCCHHHHHHHHHcCCCEEE
Confidence 7899999999999997653 2111 123445567777653 366744 588899999999999999996
No 280
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=80.24 E-value=57 Score=33.65 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHHH-
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAVG- 307 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL~- 307 (480)
++++..+.|+++.++|.+.+-|-........ +-+++....|+++++... .+.+|.+|.. +++.+.+.++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~------~~~~~d~~~v~~ir~~~g-~~~~l~vDaN~~~~~~~a~~~~~~ 211 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGG------EDLREDLARVRAVREAVG-PDVDLMVDANGRWDLAEAIRLARA 211 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcch------HHHHHHHHHHHHHHHhhC-CCCEEEEECCCCCCHHHHHHHHHH
Confidence 6888999999999999999988542110000 112223344566665432 3789999975 4444433333
Q ss_pred ---cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 308 ---KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 308 ---~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
.|..+|=.-......+.+..+.+..++++++
T Consensus 212 l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~ 245 (357)
T cd03316 212 LEEYDLFWFEEPVPPDDLEGLARLRQATSVPIAA 245 (357)
T ss_pred hCccCCCeEcCCCCccCHHHHHHHHHhCCCCEEe
Confidence 2566664332211114566676777888776
No 281
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=79.91 E-value=51 Score=34.98 Aligned_cols=185 Identities=12% Similarity=0.200 Sum_probs=105.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHH-HHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASE-AVG 307 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~a-aL~ 307 (480)
..++.|...+..++|.++|.|+.-|=+.-++ ..+..+++. +-...|=|+-=..+.+ .|.
T Consensus 136 ~~~t~d~~~~~v~~qa~~GVdfmTIHaGV~~----------------~~~~~~~~~----~R~~giVSRGGsi~a~Wml~ 195 (432)
T COG0422 136 EDLTEDDFFDTVEKQAEQGVDFMTIHAGVLL----------------EYVPRTKRS----GRVTGIVSRGGSIMAAWMLH 195 (432)
T ss_pred hhCCHHHHHHHHHHHHHhCCcEEEeehhhhH----------------HHHHHHHhc----CceeeeeccchHHHHHHHHH
Confidence 3577889999999999999999999763211 223333432 3345555555544432 333
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
++.. |=.. .. -+++++++++|++.+=+=.-. .|.....-.+ ..=+.|+ ..+-+++++|.++|+ ++++.
T Consensus 196 ~~~E--Nply-~~-fd~lleI~k~yDvtlSLGDgl-RPG~i~DA~D---~aQ~~EL-~tlgeL~krA~~~gV---QvmvE 263 (432)
T COG0422 196 NHKE--NPLY-EH-FDELLEIFKEYDVTLSLGDGL-RPGCIADAND---EAQFAEL-ITLGELTKRAWEAGV---QVMVE 263 (432)
T ss_pred cCCc--Cchh-hh-HHHHHHHHHHhCeeeeccCCC-CCCcccCCcc---HHHHHHH-HHHHHHHHHHHHcCC---EEEEE
Confidence 3321 1111 11 278999999999876653210 1322221110 1112333 357789999999999 46665
Q ss_pred -cCCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEE
Q 038230 388 -PGLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIV 454 (480)
Q Consensus 388 -PgiGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~Il 454 (480)
||.-.-...+.|+.+.+++ ..+.|..+ |. -+|.-.+.-|. ..++.-.+++...|++++
T Consensus 264 GPGHvpl~~I~~nv~l~k~~-c~~aPfYvLGP-------LvTDIApGYDH-ItsAIGaA~aa~~Gad~L 323 (432)
T COG0422 264 GPGHVPLNEIEANVKLQKEL-CDGAPFYVLGP-------LVTDIAPGYDH-ITSAIGAAMAAWAGADML 323 (432)
T ss_pred CCCcCcHHHHHHHHHHHHHh-cCCCCeeeeCC-------cccccCCCchH-HHHHHHHHHHHhccCceE
Confidence 5543445556777777764 34777643 32 12222212233 344445788889999986
No 282
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.82 E-value=16 Score=36.72 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=67.3
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY 298 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~ 298 (480)
+|| |.+ | -.|.+...+.++.+++.|+|-|=++| ||.-+ ...+ .||..++...+..... ++...+=+.+
T Consensus 9 ~TP--f~~-g-~iD~~~~~~li~~l~~~Gv~Gl~~~G-stGE~-~~Lt-~eEr~~l~~~~~~~~~-----~vi~gvg~~~ 76 (279)
T cd00953 9 ITP--FTG-N-KIDKEKFKKHCENLISKGIDYVFVAG-TTGLG-PSLS-FQEKLELLKAYSDITD-----KVIFQVGSLN 76 (279)
T ss_pred ecC--cCC-C-CcCHHHHHHHHHHHHHcCCcEEEEcc-cCCCc-ccCC-HHHHHHHHHHHHHHcC-----CEEEEeCcCC
Confidence 488 877 5 37899999999999999999999987 34332 2344 4666666543322221 4667776555
Q ss_pred HHHH----HHHHHcCCCEEecCCCC--C--CCch---HHHHHHhcCCCEEEEcC
Q 038230 299 SKVA----SEAVGKGAHIVNDVSAG--Q--LDPD---MYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 299 ~~v~----~aaL~~G~~iINdVsg~--~--~d~~---m~~l~~~~~~~vVlmh~ 341 (480)
.+.+ ++|-++|+|-+--+.-. . .+++ .+.-+++ +.|+++-+.
T Consensus 77 ~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~ 129 (279)
T cd00953 77 LEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNY 129 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeC
Confidence 5433 33344588866544331 1 1223 3444555 888888654
No 283
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.77 E-value=28 Score=35.44 Aligned_cols=109 Identities=11% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~ 342 (480)
..+++..++.. -..-+.++++.+.+++.+++ ++++|-.++-...+ + -+..+++++++||++--+.
T Consensus 7 ~~~l~~A~~~~---yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 7 KNMLKKAQAEG---YAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred HHHHHHHHHcC---ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455555541 35688999999998888875 88888877753321 2 2445666889998874443
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.++|++ .|-+|- ..-..++|++.-|++ +..|+.+
T Consensus 84 ~~~----------------------~e~i~~ai~~Gft--SVMiDg---S~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12737 84 HED----------------------LDDIKKKVRAGIR--SVMIDG---SHLSFEENIAIVKEVVEFCHRYDASV 131 (284)
T ss_pred CCC----------------------HHHHHHHHHcCCC--eEEecC---CCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 321 1456778889998 999994 345667888777776 3445554
No 284
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=79.58 E-value=6.4 Score=40.27 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=30.3
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA 255 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~ 255 (480)
+||+-=|++... ..|++++|++.+.++|||.|=+-+
T Consensus 151 ~I~ARTDa~~~~----g~deaI~Ra~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 151 TIIARTDARESF----GLDEAIRRSREYVAAGADCIFLEA 186 (294)
T ss_pred EEEEEecccccC----CHHHHHHHHHHHHHhCCCEEEecC
Confidence 677788888543 469999999999999999999954
No 285
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=79.57 E-value=52 Score=36.52 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHH-HHHHHc
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVA-SEAVGK 308 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~-~aaL~~ 308 (480)
.++.|...+..++|.++|.|++-|=+.-++ ..++.+++.. .++ =|+-=..+ .-++..
T Consensus 291 ~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~----------------~~v~~~~~R~--tgI----VSRGGSima~Wml~h 348 (607)
T PRK09284 291 DLTWEIFRDTLIEQAEQGVDYFTIHAGVLL----------------RYVPLTAKRV--TGI----VSRGGSIMAKWCLAH 348 (607)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEChhhHH----------------HHHHHHhCcc--cCc----ccCCHHHHHHHHHHc
Confidence 477899999999999999999999863222 1222223221 122 22332222 233333
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID- 387 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD- 387 (480)
+.. |=.. . .-+++++++++|++.+=|=.-. .|.....-.+ ..=+.|+ ..|-++.++|.++|+- +++.
T Consensus 349 ~kE--NplY-e-~FD~ileI~k~YDVtlSLGDGL-RPG~iaDA~D---~AQ~~EL-~tLGELt~rA~e~gVQ---VMIEG 416 (607)
T PRK09284 349 HKE--NFLY-T-HFEEICEIMAAYDVSFSLGDGL-RPGSIADAND---EAQFAEL-ETLGELTKIAWEHDVQ---VMIEG 416 (607)
T ss_pred CCc--CcHH-H-HHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEEC
Confidence 321 1011 0 1278999999999887663321 2332222110 1123333 4678899999999994 6665
Q ss_pred cCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccc-cCCCCcCcccHHHHHHHHHHHHcCCcEEE-----------
Q 038230 388 PGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEI-CNRPSADERDPATIASITAGVLGGANIVR----------- 455 (480)
Q Consensus 388 PgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v-~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR----------- 455 (480)
||.-.-...+.|+++.+++ ..+.|..+ +|-+ |.-.+--|. ..++.-.+++...|+++|=
T Consensus 417 PGHVPl~~I~~N~~lqk~l-c~~APfYv-------LGPLvTDIApGYDH-ItsAIGaA~aa~~Gad~LCYVTPaEHLgLP 487 (607)
T PRK09284 417 PGHVPMHLIKENMDKQLEH-CHEAPFYT-------LGPLTTDIAPGYDH-ITSAIGAAMIGWFGTAMLCYVTPKEHLGLP 487 (607)
T ss_pred CCCCcHHHHHHHHHHHHHh-hCCCCeee-------cCCcccccCCCchH-HHHHHHHHHHHHcCCCeEEecChHHHcCCC
Confidence 6655555667888888875 34667532 1222 222111122 2333447788889999873
Q ss_pred -cCChHHHHHHHHHHH
Q 038230 456 -VHNIRDNLDAVKLCD 470 (480)
Q Consensus 456 -vHdV~e~~~al~~~~ 470 (480)
+.||+|=..|.|++.
T Consensus 488 ~~eDVreGVIA~KIAA 503 (607)
T PRK09284 488 NKDDVKEGVITYKIAA 503 (607)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 345666444444443
No 286
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=79.37 E-value=59 Score=35.18 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 229 KFQSVEAAVSQVRLMISE--GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~--GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
+..+++.+++.++.+.+. |+..|-++...-. .+ .+++..+.+.+++.
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~-----~~----~~~~~~l~~~l~~~ 273 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFT-----DD----KPRAEEIARKLGPL 273 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCC-----CC----HHHHHHHHHHHhhc
Confidence 346889999999988886 7887777643211 11 34556666666653
No 287
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=79.34 E-value=14 Score=37.06 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCC
Q 038230 221 PDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTF 297 (480)
Q Consensus 221 pDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~ 297 (480)
+-.|+|+.+. +++.+++.++++.+.||+.|=|.= |-- .-..+++.++ ++.+++.. .+++|++ |++
T Consensus 139 ~~~~~d~~~~-~~~~~~~~~~~~~~~g~~~i~l~D--T~G----~~~P~~v~~l---v~~l~~~~--~~~~l~~H~Hnd~ 206 (273)
T cd07941 139 AEHFFDGYKA-NPEYALATLKAAAEAGADWLVLCD--TNG----GTLPHEIAEI---VKEVRERL--PGVPLGIHAHNDS 206 (273)
T ss_pred EEeccccCCC-CHHHHHHHHHHHHhCCCCEEEEec--CCC----CCCHHHHHHH---HHHHHHhC--CCCeeEEEecCCC
Confidence 4477887764 889999999999999999986651 111 1122455555 45556543 3588888 454
Q ss_pred CH--HHHHHHHHcCCCEEec
Q 038230 298 YS--KVASEAVGKGAHIVND 315 (480)
Q Consensus 298 ~~--~v~~aaL~~G~~iINd 315 (480)
-- .-+.+|+++|+++|..
T Consensus 207 Gla~An~laA~~aGa~~id~ 226 (273)
T cd07941 207 GLAVANSLAAVEAGATQVQG 226 (273)
T ss_pred CcHHHHHHHHHHcCCCEEEE
Confidence 43 3446788899999873
No 288
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=79.24 E-value=88 Score=32.93 Aligned_cols=150 Identities=18% Similarity=0.153 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHH-HcC
Q 038230 233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKE--LERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAV-GKG 309 (480)
Q Consensus 233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE--~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL-~~G 309 (480)
.|..++.++.|+++|||.|=|= .|-.-+-...+ -+| ..-+..+++.+++.. .++||..=.....-..+.+ +.|
T Consensus 188 td~~i~Yl~~qi~aGAdavqif-DsW~g~l~~~~-~~~f~~~~~~~i~~~vk~~~--~~~pii~f~~ga~~~l~~m~~~g 263 (352)
T COG0407 188 TDAVIEYLKAQIEAGADAVQIF-DSWAGVLSMID-YDEFVLPYMKRIVREVKEVK--GGVPVIHFCKGAGHLLEDMAKTG 263 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEee-ccccccCCccc-HHHHhhhHHHHHHHHHHHhC--CCCcEEEECCCcHHHHHHHHhcC
Confidence 4567788999999999988762 22100111112 222 223333455555432 2467666555555555544 458
Q ss_pred CCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230 310 AHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389 (480)
Q Consensus 310 ~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg 389 (480)
++.+- +. +.-.+-+..+..+-.++++-+- +| +.- ...+ +.+++.+++..+.|...+.-||-||
T Consensus 264 ~d~l~-vd---w~v~l~~a~~~~~~~~~lqGNl-dP-~lL---~~~~--------~~i~~~~~~iL~~~~~~~~~IfnlG 326 (352)
T COG0407 264 FDVLG-VD---WRVDLKEAKKRLGDKVALQGNL-DP-ALL---YAPP--------EAIKEEVKRILEDGGDGSGYIFNLG 326 (352)
T ss_pred CcEEe-ec---cccCHHHHHHHhCCCceEEecc-Ch-Hhh---cCCH--------HHHHHHHHHHHHHhccCCCceecCC
Confidence 88774 32 2233444444455556665543 34 111 1111 3344555555566666578899999
Q ss_pred CCCc-cChhHHHHHH
Q 038230 390 LGFS-KKAEHNLDIL 403 (480)
Q Consensus 390 iGf~-k~~~~~~~~l 403 (480)
.|.. .+..+|++.+
T Consensus 327 hGI~P~tp~e~v~~l 341 (352)
T COG0407 327 HGILPETPPENVKAL 341 (352)
T ss_pred CCcCCCCCHHHHHHH
Confidence 9974 4555555443
No 289
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=79.21 E-value=26 Score=35.74 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC-CeEEEe---CCCHHHHHHHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG-KLVSVD---TFYSKVASEAVG 307 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~-~pISID---T~~~~v~~aaL~ 307 (480)
...+.++.+.++ .++.--||+.|.-+.. + .....+.++....++. + +++.+- +..++.+.+++.
T Consensus 121 ~~~~~~~l~~~~-~~~vvG~Dl~g~E~~~---~----~~~~~f~~~~~~ar~~----g~l~~t~HaGE~~~~~~v~~~~~ 188 (305)
T cd00443 121 VASEILELAKFL-SNYVVGIDLVGDESKG---E----NPLRDFYSYYEYARRL----GLLGLTLHCGETGNREELLQALL 188 (305)
T ss_pred hHHHHHHHHHHh-cCCEEEEEcCCCCCCC---C----CCHHHHHHHHHHHHHc----CCcceEEeecCCCChHHHHHHHH
Confidence 344555666554 3355567777632211 0 1145566777777765 6 777775 457788889998
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC----CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR----GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~----g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~ 383 (480)
.+++-|==-.....+|++++++++.++++.+++.. |...+. -..-+.++.++|++
T Consensus 189 ~~~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~------------------~~hP~~~~~~~G~~--- 247 (305)
T cd00443 189 LLPDRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTVQSY------------------EKHPFMRFFKAGLP--- 247 (305)
T ss_pred hccceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhhcCCCCh------------------hhChHHHHHHCCCe---
Confidence 76554422112234689999999999999998752 111111 12335566788995
Q ss_pred EEE---ecCCCCccChhHHHHHHHh
Q 038230 384 III---DPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 384 Iil---DPgiGf~k~~~~~~~~lr~ 405 (480)
+.+ ||++ |+.+..+.+..+..
T Consensus 248 v~i~TDd~~~-~~~~l~~E~~~~~~ 271 (305)
T cd00443 248 VSLSTDDPGI-FGTSLSEEYSLAAK 271 (305)
T ss_pred EEEeCCCCcc-cCCChHHHHHHHHH
Confidence 888 8876 44466555555443
No 290
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.16 E-value=8.6 Score=42.30 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKG 309 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G 309 (480)
.+.+++.++++.++++|+|+|.|. +.++. -.++...|+.+++... .+++|-- --..++.++.++++|
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd---~a~g~--------~~~~~~~i~~ir~~~~-~~~~V~aGnV~t~e~a~~li~aG 305 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCID---SSEGY--------SEWQKRTLDWIREKYG-DSVKVGAGNVVDREGFRYLAEAG 305 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeec---Ccccc--------cHHHHHHHHHHHHhCC-CCceEEeccccCHHHHHHHHHcC
Confidence 345678999999999999999997 33443 1234566777776531 1233333 367889999999999
Q ss_pred CCEEe
Q 038230 310 AHIVN 314 (480)
Q Consensus 310 ~~iIN 314 (480)
||.|-
T Consensus 306 Ad~I~ 310 (502)
T PRK07107 306 ADFVK 310 (502)
T ss_pred CCEEE
Confidence 99874
No 291
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=79.09 E-value=30 Score=35.25 Aligned_cols=109 Identities=9% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~ 342 (480)
..+++..++.. -..-+.+.++.+.+++.+++ ++++|-.++-.... + -+..+++++++||++--+.
T Consensus 5 k~ll~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 5 KYMLQDAQAGG---YAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDH 81 (282)
T ss_pred HHHHHHHHHcC---CeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455555441 35688999999998888875 89998888754321 2 2334666789998874333
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.+.|++ .|-+| |-.-+.++|++.-+++ +..|+++
T Consensus 82 g~~----------------------~e~i~~ai~~GFt--SVM~D---gS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 82 HES----------------------LDDIRQKVHAGVR--SAMID---GSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred CCC----------------------HHHHHHHHHcCCC--EEeec---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 321 1456778899997 89999 4455678888887776 3456655
No 292
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=79.07 E-value=15 Score=36.90 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=60.0
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHcCCcCCCCeEEEeCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVL-EAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi-~~l~~~~~~~~~pISIDT~ 297 (480)
+|| |.+.|. .|.+...+.++.++++|.+-|=++|- |.-+ ...+ .+|..++...+ +..... ..+.+.+-..
T Consensus 10 ~TP--f~~dg~-id~~~~~~~i~~l~~~Gv~gl~~~Gs-tGE~-~~Lt-~~Er~~l~~~~~~~~~~~---~~vi~gv~~~ 80 (289)
T PF00701_consen 10 ITP--FNADGS-IDEDALKRLIDFLIEAGVDGLVVLGS-TGEF-YSLT-DEERKELLEIVVEAAAGR---VPVIAGVGAN 80 (289)
T ss_dssp -----BETTSS-B-HHHHHHHHHHHHHTTSSEEEESST-TTTG-GGS--HHHHHHHHHHHHHHHTTS---SEEEEEEESS
T ss_pred eCC--CCCCcC-cCHHHHHHHHHHHHHcCCCEEEECCC-Cccc-ccCC-HHHHHHHHHHHHHHccCc---eEEEecCcch
Confidence 578 888765 68999999999999999999999973 3322 2344 46666665544 333322 2344555554
Q ss_pred CHHHH----HHHHHcCCCEEecCCC--CCCC-ch----HHHHHHhcCCCEEEEc
Q 038230 298 YSKVA----SEAVGKGAHIVNDVSA--GQLD-PD----MYKVVAGLKVPYVAMH 340 (480)
Q Consensus 298 ~~~v~----~aaL~~G~~iINdVsg--~~~d-~~----m~~l~~~~~~~vVlmh 340 (480)
+.+.+ +.|-+.|++-+--+.. .... ++ +-.++...+.|+++-+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEE
Confidence 43332 2233347774432211 1111 22 3344445667777644
No 293
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=79.00 E-value=42 Score=33.19 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G 309 (480)
+.++.|+++.+.||+ ++|+-+.-+ .-..-..+++.+.+. .++||.+ --++.+-++++++.|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~-----------~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~G 96 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSE-----------GRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAG 96 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc-----------cChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcC
Confidence 466678888888985 556654211 011223456666665 3678888 678999999999999
Q ss_pred CCEEecCCC-CCCCchHH-HHHHhcC-CCEE-EEcCC-CCCCcccc---ccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 310 AHIVNDVSA-GQLDPDMY-KVVAGLK-VPYV-AMHMR-GDPSTMQN---EENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 310 ~~iINdVsg-~~~d~~m~-~l~~~~~-~~vV-lmh~~-g~p~~~~~---~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
++.+- +.. .-.+++++ ++...|+ -.+| -+..+ |.+.+-.. ... .+. ++....+.+.++.+.++|+.
T Consensus 97 a~~vi-vgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~-gw~---~~~~~~~~~~~~~l~~~G~~- 170 (254)
T TIGR00735 97 ADKVS-INTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIY-GGR---ESTGLDAVEWAKEVEKLGAG- 170 (254)
T ss_pred CCEEE-EChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEe-CCc---ccCCCCHHHHHHHHHHcCCC-
Confidence 88542 211 11245544 4555665 2344 34432 32110000 000 000 00011234566777899997
Q ss_pred CCEEEecCCCCccChhHHHHHHHhc-ccCCCcEEE
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGL-AASHAPILI 415 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l-~~~g~Pil~ 415 (480)
.|++-.----+....-++++++++ +..+.|++.
T Consensus 171 -~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia 204 (254)
T TIGR00735 171 -EILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIA 204 (254)
T ss_pred -EEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEE
Confidence 677633110011111246667776 346889875
No 294
>PRK06852 aldolase; Validated
Probab=78.95 E-value=44 Score=34.43 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=45.5
Q ss_pred CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----------eCCCHHHHHHH----HHcCCCEE
Q 038230 248 ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----------DTFYSKVASEA----VGKGAHIV 313 (480)
Q Consensus 248 AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----------DT~~~~v~~aa----L~~G~~iI 313 (480)
||-+-+. ..+|++ .+.+.++.+..++++-.+. ++|+-+ |..+|+.+.-| .+.|||||
T Consensus 135 AdAV~v~---v~~Gs~--~E~~ml~~l~~v~~ea~~~----GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIV 205 (304)
T PRK06852 135 ILGVGYT---IYLGSE--YESEMLSEAAQIIYEAHKH----GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFV 205 (304)
T ss_pred ceEEEEE---EecCCH--HHHHHHHHHHHHHHHHHHh----CCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEE
Confidence 6665554 234432 2345566666666666654 888775 66776665554 44589998
Q ss_pred ecCCCCC---CC-chHHHHHHhc-CCCEEE
Q 038230 314 NDVSAGQ---LD-PDMYKVVAGL-KVPYVA 338 (480)
Q Consensus 314 NdVsg~~---~d-~~m~~l~~~~-~~~vVl 338 (480)
---.-.+ .+ +.+.++++-. .++||+
T Consensus 206 Kv~y~~~~~~g~~e~f~~vv~~~g~vpVvi 235 (304)
T PRK06852 206 KVNYPKKEGANPAELFKEAVLAAGRTKVVC 235 (304)
T ss_pred EecCCCcCCCCCHHHHHHHHHhCCCCcEEE
Confidence 7433210 23 3455555544 344444
No 295
>PLN02444 HMP-P synthase
Probab=78.93 E-value=40 Score=37.44 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=109.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHH-HHHHHHc
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKV-ASEAVGK 308 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v-~~aaL~~ 308 (480)
.++.|...+..++|.++|.|++-|=+.-++ ..++.+++.. .++ =|+-=.. +.-.+..
T Consensus 296 ~lt~d~~~d~ieeQaeqGVDfmTIH~Gv~~----------------~~v~~~~~R~--tgI----VSRGGSi~a~Wml~~ 353 (642)
T PLN02444 296 NLTWEVFRETLIEQAEQGVDYFTIHAGVLL----------------RYIPLTAKRM--TGI----VSRGGSIHAKWCLAY 353 (642)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEChhhHH----------------HHHHHHhCcc--cCc----eeCCcHHHHHHHHHc
Confidence 478899999999999999999999863222 1222223221 122 2222222 2223333
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID- 387 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD- 387 (480)
+.. |=.. +.-+++++++++|++.+=|=.-. .|....+-.+ ..=+.|+ ..|-++.++|.++|+- +++.
T Consensus 354 ~kE--NPlY--e~FD~ileI~k~YDVtlSLGDGL-RPG~iaDA~D---~AQ~~EL-~tLGELtkrA~e~gVQ---VMIEG 421 (642)
T PLN02444 354 HKE--NFAY--EHWDDILDICNQYDIALSIGDGL-RPGSIYDAND---TAQFAEL-LTQGELTRRAWEKDVQ---VMNEG 421 (642)
T ss_pred CCc--CchH--HHHHHHHHHHHHhCeeeeccCCc-CCCccccCCc---HHHHHHH-HHHHHHHHHHHHcCCe---EEEEC
Confidence 211 1000 01278999999999877653221 1332221110 1123333 3578899999999994 6665
Q ss_pred cCCCCccChhHHHHHHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE-----------
Q 038230 388 PGLGFSKKAEHNLDILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR----------- 455 (480)
Q Consensus 388 PgiGf~k~~~~~~~~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR----------- 455 (480)
||.-.-...+.|+++.+++ ..+.|..+ |. -+|.-.+--|. ..++.-.+++...|+++|=
T Consensus 422 PGHVPl~~I~~Nv~lqk~l-C~~APfYvLGP-------LvTDIAPGYDH-ItsAIGaAiaa~~GadfLCYVTPaEHLgLP 492 (642)
T PLN02444 422 PGHVPLHKIPENMQKQLEW-CNEAPFYTLGP-------LTTDIAPGYDH-ITSAIGAANIGALGTALLCYVTPKEHLGLP 492 (642)
T ss_pred CCcCcHHHHHHHHHHHHHh-hCCCCceecCC-------cccccCCCchH-HHHHHHHHHHHHcCCCeEEecChHHHcCCC
Confidence 6655556667888888875 34667542 32 12222211222 2333347788889999874
Q ss_pred -cCChHHHHHHHHHHH
Q 038230 456 -VHNIRDNLDAVKLCD 470 (480)
Q Consensus 456 -vHdV~e~~~al~~~~ 470 (480)
+.||+|=..|.|++.
T Consensus 493 ~~eDVreGVIA~KIAA 508 (642)
T PLN02444 493 NRDDVKAGVIAYKIAA 508 (642)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 345666444445443
No 296
>PRK08185 hypothetical protein; Provisional
Probab=78.81 E-value=29 Score=35.35 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC-------chHHHHHHhcCCCEEEEcCCCCCCccccccccchh
Q 038230 289 GKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD-------PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYD 357 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d-------~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~ 357 (480)
-..-+.++++.+.+++.+++ +.++|-.++....+ +-+..+++++.+||++--+.|..
T Consensus 13 yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~------------ 80 (283)
T PRK08185 13 FAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGAT------------ 80 (283)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCC------------
Confidence 35688999999988888775 89988888754321 23455677899997763333321
Q ss_pred hHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcEE
Q 038230 358 DVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPIL 414 (480)
Q Consensus 358 ~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pil 414 (480)
.+.+..|.+.|++ .|.+| |-.-+.++|+++-+++ +..|+++=
T Consensus 81 ----------~e~i~~ai~~Gf~--SVM~D---~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 81 ----------IEDVMRAIRCGFT--SVMID---GSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred ----------HHHHHHHHHcCCC--EEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1446677789997 89999 3445667888777766 34577763
No 297
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=78.76 E-value=17 Score=36.63 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCH--H
Q 038230 226 DGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYS--K 300 (480)
Q Consensus 226 dgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~--~ 300 (480)
++|+. +++..++.++++.+.|||.|=+-= |--.+ ..+++.++ ++.+++.. .++||++ |++-- .
T Consensus 142 ~~~~~-~~~~~~~~~~~~~~~Ga~~i~l~D--T~G~~----~P~~v~~l---v~~l~~~~--~~~~i~~H~Hnd~GlA~A 209 (274)
T cd07938 142 YEGEV-PPERVAEVAERLLDLGCDEISLGD--TIGVA----TPAQVRRL---LEAVLERF--PDEKLALHFHDTRGQALA 209 (274)
T ss_pred CCCCC-CHHHHHHHHHHHHHcCCCEEEECC--CCCcc----CHHHHHHH---HHHHHHHC--CCCeEEEEECCCCChHHH
Confidence 45554 899999999999999999986641 11111 12455554 55556543 3689999 44443 3
Q ss_pred HHHHHHHcCCCEEecC
Q 038230 301 VASEAVGKGAHIVNDV 316 (480)
Q Consensus 301 v~~aaL~~G~~iINdV 316 (480)
-..+|+++|+++|..-
T Consensus 210 N~laA~~aGa~~id~t 225 (274)
T cd07938 210 NILAALEAGVRRFDSS 225 (274)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 4467888999999843
No 298
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.51 E-value=50 Score=32.51 Aligned_cols=149 Identities=7% Similarity=0.037 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G 309 (480)
+-++.|+.+.+.|| +++|+.+--.++ . -.++|+.+.+.. -.|+.++- ++.+.++..++.|
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~--------~----n~~~i~~i~~~~---~~~v~vGGGIrs~e~~~~~l~~G 95 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVG--------N----NEMYIKEISKIG---FDWIQVGGGIRDIEKAKRLLSLD 95 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCc--------c----hHHHHHHHHhhC---CCCEEEeCCcCCHHHHHHHHHCC
Confidence 45678888999998 688997631111 0 124566666531 23888874 7889999999999
Q ss_pred CC--EEecCCCCCCCchHH-HHHHhcC-CCEE-EEcC-C-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCC
Q 038230 310 AH--IVNDVSAGQLDPDMY-KVVAGLK-VPYV-AMHM-R-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAW 382 (480)
Q Consensus 310 ~~--iINdVsg~~~d~~m~-~l~~~~~-~~vV-lmh~-~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~ 382 (480)
++ +||+.. .+ +++++ +++++|+ -.+| -+.. + |...+ +. +.. ....+.+.++++.+.|+. +
T Consensus 96 a~kvvigt~a-~~-~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~-~g-----w~~----~~~~~~e~~~~l~~~g~~-~ 162 (232)
T PRK13586 96 VNALVFSTIV-FT-NFNLFHDIVREIGSNRVLVSIDYDNTKRVLI-RG-----WKE----KSMEVIDGIKKVNELELL-G 162 (232)
T ss_pred CCEEEECchh-hC-CHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc-cC-----Cee----CCCCHHHHHHHHHhcCCC-E
Confidence 88 555443 22 56654 4677785 2344 3444 2 21110 00 000 001345777788899986 2
Q ss_pred CEEEec---CCCCccChhHHHHHHHhcccCCCcEEE
Q 038230 383 RIIIDP---GLGFSKKAEHNLDILLGLAASHAPILI 415 (480)
Q Consensus 383 ~IilDP---giGf~k~~~~~~~~lr~l~~~g~Pil~ 415 (480)
=|+.|- |.+.|-+ +++++.+.....|++.
T Consensus 163 ii~tdI~~dGt~~G~d----~el~~~~~~~~~~via 194 (232)
T PRK13586 163 IIFTYISNEGTTKGID----YNVKDYARLIRGLKEY 194 (232)
T ss_pred EEEecccccccCcCcC----HHHHHHHHhCCCCEEE
Confidence 244454 4444443 5556665222345543
No 299
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.50 E-value=28 Score=35.29 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=69.7
Q ss_pred HHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCCCC
Q 038230 277 VLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMRGD 344 (480)
Q Consensus 277 vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~g~ 344 (480)
+++..++.. -..-++++++.+.+++.+++ +.++|-.++-.... + -+..++.++.+||++--+.|.
T Consensus 4 lL~~A~~~~---yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~ 80 (276)
T cd00947 4 LLKKAREGG---YAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGS 80 (276)
T ss_pred HHHHHHHCC---ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344444441 35688999999988888875 88988888753321 1 234556678999888544442
Q ss_pred CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 345 PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 345 p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
. .+.+.+|.++|++ .|-+| |-.-..++|++.-+++ +..|+.+
T Consensus 81 ~----------------------~~~i~~ai~~Gft--SVMiD---~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 81 S----------------------FELIKRAIRAGFS--SVMID---GSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred C----------------------HHHHHHHHHhCCC--EEEeC---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1 1334466789987 89999 3445678888887776 3445554
No 300
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.37 E-value=34 Score=34.96 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTR------PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKV 301 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStr------P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v 301 (480)
|.++..+...++++.+.||.-|-|==++.. ||.+.++.++-.+|++-++++-++. ++.|.= |.+-.+-
T Consensus 89 fG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~----~fvi~ARTda~~~~~ 164 (289)
T COG2513 89 FGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDP----DFVIIARTDALLVEG 164 (289)
T ss_pred CCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCC----CeEEEeehHHHHhcc
Confidence 344778888999999999997766533332 6788899888888876666544421 333321 3333333
Q ss_pred HHHH-------HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEc
Q 038230 302 ASEA-------VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMH 340 (480)
Q Consensus 302 ~~aa-------L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh 340 (480)
+.+| +++|||+|- .-+.+..+++..+++.-.+|+.+.-
T Consensus 165 ld~AI~Ra~AY~eAGAD~if-~~al~~~e~i~~f~~av~~pl~~N~ 209 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIF-PEALTDLEEIRAFAEAVPVPLPANI 209 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEc-cccCCCHHHHHHHHHhcCCCeeeEe
Confidence 3333 346999997 4444423567777777776666543
No 301
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=78.33 E-value=17 Score=35.34 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY 298 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~ 298 (480)
.++++.+.||+.+++|... . +..+.+..+++...+ ..+++|+|...
T Consensus 88 d~~~~~~~G~~~vilg~~~-l---------~~~~~~~~~~~~~~~----~~i~vsld~~~ 133 (232)
T TIGR03572 88 DAKKLLSLGADKVSINTAA-L---------ENPDLIEEAARRFGS----QCVVVSIDVKK 133 (232)
T ss_pred HHHHHHHcCCCEEEEChhH-h---------cCHHHHHHHHHHcCC----ceEEEEEEecc
Confidence 3445667899999999431 1 112333333433322 23789999765
No 302
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=78.31 E-value=17 Score=34.99 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCEEEeCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230 238 SQVRLMISEGADMIDIGAQ-STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~e-StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN 314 (480)
++++...+.|||+|-+... ...|.. ++.. .+++.+++.. ++++.++..+++.++.+.+.|+++|-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~------~~~~---~~i~~~~~~g---~~~iiv~v~t~~ea~~a~~~G~d~i~ 148 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDG------ETLA---ELIKRIHEEY---NCLLMADISTLEEALNAAKLGFDIIG 148 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCC------cCHH---HHHHHHHHHh---CCeEEEECCCHHHHHHHHHcCCCEEE
Confidence 4778889999999977641 111221 2233 3455566551 48899999999999999999999993
No 303
>PTZ00124 adenosine deaminase; Provisional
Probab=78.29 E-value=37 Score=35.74 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCcCCCCeEEEeCC------C-HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCC
Q 038230 272 ERLIPVLEAVLTMPEMEGKLVSVDTF------Y-SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGD 344 (480)
Q Consensus 272 ~rl~~vi~~l~~~~~~~~~pISIDT~------~-~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~ 344 (480)
..+.++.+..++. ++++.+=.- + .++.++....|++-|-==.....++++++.+++.++++-+++....
T Consensus 206 ~~f~~~f~~Ar~~----Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~ 281 (362)
T PTZ00124 206 KPFKDIFDYVREA----GVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVAESQELIDMVKEKDILLEVCPISNV 281 (362)
T ss_pred HHHHHHHHHHHHC----CCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccCCCHHHHHHHHHcCCeEEECCcchh
Confidence 3466777777765 677777332 1 2355555556666553222222378999999999999999886321
Q ss_pred -CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE---ecCCCCccChhHHHHHHHh
Q 038230 345 -PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII---DPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 345 -p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k~~~~~~~~lr~ 405 (480)
.... ..+...-+..+.++|++ +.+ ||++ |+.+..+.+.++.+
T Consensus 282 ~~~~v---------------~~~~~HPi~~l~~~Gv~---v~InTDDp~~-~~t~l~~Ey~~~~~ 327 (362)
T PTZ00124 282 LLNNA---------------KSMDTHPIRKLYDAGVK---VSVNSDDPGM-FLTNINDDYEELYT 327 (362)
T ss_pred hhhcC---------------CchhhHHHHHHHHCCCc---EEEeCCCccc-cCCChhHHHHHHHH
Confidence 1110 11223557778899996 777 7876 67777777877765
No 304
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=78.28 E-value=14 Score=38.16 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--
Q 038230 220 TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS-TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-- 296 (480)
Q Consensus 220 tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eS-trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-- 296 (480)
+|+.+.++|. +.+++++.++.+.+.|.|+|+|...+ +.+...++... ...+..+.|++. .++||...-
T Consensus 229 ~~~~~~~~g~--~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~----~~~~~~~~ir~~---~~iPVi~~G~i 299 (336)
T cd02932 229 SATDWVEGGW--DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPG----YQVPFAERIRQE---AGIPVIAVGLI 299 (336)
T ss_pred cccccCCCCC--CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCcc----ccHHHHHHHHhh---CCCCEEEeCCC
Confidence 4455666653 68999999999999999999986321 11100111111 112344556665 367777643
Q ss_pred CCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHH
Q 038230 297 FYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVV 329 (480)
Q Consensus 297 ~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~ 329 (480)
++++.++++++.| +|+|---.+.-.||.+..-+
T Consensus 300 ~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~ 333 (336)
T cd02932 300 TDPEQAEAILESGRADLVALGRELLRNPYWPLHA 333 (336)
T ss_pred CCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHH
Confidence 4799999999997 89987665554566655433
No 305
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=78.24 E-value=19 Score=37.76 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=65.1
Q ss_pred EEEEecCCCC-C--CCCCccCCHHH-HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC
Q 038230 214 MGILNLTPDS-F--SDGGKFQSVEA-AVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG 289 (480)
Q Consensus 214 mGIlN~tpDS-F--sdgg~~~~~e~-a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~ 289 (480)
+|+ -++|+. | .++| .+.++ +++.++.+.+.|.|+|+|...... +..... .+..+.+++.. +
T Consensus 228 igv-Ris~~~~~~~~~~G--~~~~e~~~~~~~~L~~~giD~i~vs~~~~~-~~~~~~--------~~~~~~ik~~~---~ 292 (362)
T PRK10605 228 IGI-RISPLGTFNNVDNG--PNEEADALYLIEQLGKRGIAYLHMSEPDWA-GGEPYS--------DAFREKVRARF---H 292 (362)
T ss_pred EEE-EECCccccccCCCC--CCHHHHHHHHHHHHHHcCCCEEEecccccc-CCcccc--------HHHHHHHHHHC---C
Confidence 554 455643 2 3444 46677 899999999999999999752111 111111 12234455442 4
Q ss_pred Ce-EEEeCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230 290 KL-VSVDTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 290 ~p-ISIDT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~ 331 (480)
+| ++.-.++|+.++++|+.| +|+|-=-...-.||++..-+++
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhc
Confidence 34 444667899999999997 8998755555557877766665
No 306
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=78.02 E-value=33 Score=31.01 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--H-HH----HHHHH
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY--S-KV----ASEAV 306 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~--~-~v----~~aaL 306 (480)
+...+.++...+.||+.|-++.....|...... .. ..++.+.+. .+.|+.++.+. + +. ++.+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~---~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~ 81 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETD---DK----EVLKEVAAE---TDLPLGVQLAINDAAAAVDIAAAAAR 81 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCc---cc----cHHHHHHhh---cCCcEEEEEccCCchhhhhHHHHHHH
Confidence 567888888999999999999754443221100 00 123333333 36777776542 2 22 24777
Q ss_pred HcCCCEEecCCCCCC-----CchHHHHHHhc--CCCEEE
Q 038230 307 GKGAHIVNDVSAGQL-----DPDMYKVVAGL--KVPYVA 338 (480)
Q Consensus 307 ~~G~~iINdVsg~~~-----d~~m~~l~~~~--~~~vVl 338 (480)
++|++.|. +.+... ..++++.+++. +.++++
T Consensus 82 ~~g~d~v~-l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~ 119 (200)
T cd04722 82 AAGADGVE-IHGAVGYLAREDLELIRELREAVPDVKVVV 119 (200)
T ss_pred HcCCCEEE-EeccCCcHHHHHHHHHHHHHHhcCCceEEE
Confidence 88999885 444321 24566666665 666664
No 307
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=77.97 E-value=46 Score=34.07 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=70.9
Q ss_pred EEEeCCCHHHHHHHHHcCCCEEecCCCCCC------------CchHH-HHHHhcCCCEEEEcCCCCCCccccccccchhh
Q 038230 292 VSVDTFYSKVASEAVGKGAHIVNDVSAGQL------------DPDMY-KVVAGLKVPYVAMHMRGDPSTMQNEENLQYDD 358 (480)
Q Consensus 292 ISIDT~~~~v~~aaL~~G~~iINdVsg~~~------------d~~m~-~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~ 358 (480)
+-.|-.+++.++-|=++|++=||---+-.. +++.+ .+-+..+.||+..+..|
T Consensus 20 vimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Rig--------------- 84 (293)
T PRK04180 20 VIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARIG--------------- 84 (293)
T ss_pred eEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehhh---------------
Confidence 667999999999999999887774322211 23332 23333466666655432
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHH
Q 038230 359 VCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPA 438 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~ 438 (480)
+ ..-++.+.+.|++ +| | ...--....+.+..+|+ .++.|+++|+|+ .
T Consensus 85 -------h-~~Ea~~L~~~GvD---iI-D-~Te~lrpad~~~~~~K~--~f~~~fmad~~~-----------------l- 131 (293)
T PRK04180 85 -------H-FVEAQILEALGVD---YI-D-ESEVLTPADEEYHIDKW--DFTVPFVCGARN-----------------L- 131 (293)
T ss_pred -------H-HHHHHHHHHcCCC---EE-e-ccCCCCchHHHHHHHHH--HcCCCEEccCCC-----------------H-
Confidence 1 2345667889996 55 8 22211122333444544 359999988751 1
Q ss_pred HHHHHHHHHHcCCcEEEcC
Q 038230 439 TIASITAGVLGGANIVRVH 457 (480)
Q Consensus 439 t~a~~~~a~~~Ga~IlRvH 457 (480)
.=+..+...|+++|||+
T Consensus 132 --~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 132 --GEALRRIAEGAAMIRTK 148 (293)
T ss_pred --HHHHHHHHCCCCeeecc
Confidence 11346888999999999
No 308
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=77.84 E-value=84 Score=32.01 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHH-HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCC-Cccc
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAV-GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDP-STMQ 349 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL-~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p-~~~~ 349 (480)
..+.+..++. ++++.+-.- .+..+..++ ..|++.|==-.....+++.++++++.|+++++++....- ....
T Consensus 175 ~~~~~~A~~~----g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~~~~ 250 (324)
T TIGR01430 175 VRAFAIAREL----GLHLTVHAGELGGPESVREALDDLGATRIGHGVRALEDPELLKRLAQENITLEVCPTSNVALGVVK 250 (324)
T ss_pred HHHHHHHHHC----CCCeEEecCCCCChHHHHHHHHHcCchhcchhhhhccCHHHHHHHHHcCceEEECCcccccccccC
Confidence 3445555654 788888554 455566666 468764411111122577999999999999987753110 0000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE---ecCCCCccChhHHHHHHH
Q 038230 350 NEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII---DPGLGFSKKAEHNLDILL 404 (480)
Q Consensus 350 ~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil---DPgiGf~k~~~~~~~~lr 404 (480)
. .-..-+..+.++|++ |-+ ||++ |+.+..+.+.++.
T Consensus 251 ~---------------~~~~pi~~l~~~Gv~---v~igTD~~~~-~~~~l~~e~~~a~ 289 (324)
T TIGR01430 251 S---------------LAEHPLRRFLEAGVK---VTLNSDDPAY-FGSYLTEEYEIAA 289 (324)
T ss_pred C---------------cccChHHHHHHCCCE---EEECCCCCcc-cCCCHHHHHHHHH
Confidence 0 001235567789995 776 6654 4445544444443
No 309
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=77.79 E-value=76 Score=33.36 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=37.8
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----------e----CCCHHHHHHH-
Q 038230 241 RLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----------D----TFYSKVASEA- 305 (480)
Q Consensus 241 ~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----------D----T~~~~v~~aa- 305 (480)
++-++-|||-+-+- ..||++ .+.+.++.+..++++-.+. ++|+-+ | ++.|+.+..|
T Consensus 153 edAlrLGAdAV~~t---vy~Gs~--~E~~ml~~l~~i~~ea~~~----GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~Aa 223 (348)
T PRK09250 153 EDALRLGAVAVGAT---IYFGSE--ESRRQIEEISEAFEEAHEL----GLATVLWSYLRNSAFKKDGDYHTAADLTGQAN 223 (348)
T ss_pred HHHHHCCCCEEEEE---EecCCH--HHHHHHHHHHHHHHHHHHh----CCCEEEEecccCcccCCcccccccHHHHHHHH
Confidence 33457899976664 335532 1334555666666666554 888776 1 2235554444
Q ss_pred ---HHcCCCEEe
Q 038230 306 ---VGKGAHIVN 314 (480)
Q Consensus 306 ---L~~G~~iIN 314 (480)
.+.|||||-
T Consensus 224 RiaaELGADIVK 235 (348)
T PRK09250 224 HLAATIGADIIK 235 (348)
T ss_pred HHHHHHcCCEEE
Confidence 445888887
No 310
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=77.75 E-value=33 Score=35.01 Aligned_cols=109 Identities=8% Similarity=0.093 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC--------chHHHHHHhcCCCEEEEcCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD--------PDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d--------~~m~~l~~~~~~~vVlmh~~ 342 (480)
..+++..++.. -..-+.++++.+.+++.+++ +.++|-.++-.... +-+..+++++.+||++--+.
T Consensus 7 k~il~~A~~~~---yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 7 KQMLNNAQRGG---YAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHHHHHHHcC---ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34455545441 35689999999999888875 88888877653211 12455777899998874344
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.++|++ .|-+|- ..-+.++|++.-+++ +..|+.+
T Consensus 84 g~~----------------------~e~i~~Ai~~Gft--SVM~Dg---S~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 84 HEK----------------------FDDIAQKVRSGVR--SVMIDG---SHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred CCC----------------------HHHHHHHHHcCCC--EEEeCC---CCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 321 1456677889997 999993 445667888777765 3445554
No 311
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.61 E-value=28 Score=36.27 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCCEEEeCCC---------CC----CCCCCCCCHHHHHHHHHHHHHHHHcCCcC---CCCeEEE----
Q 038230 235 AAVSQVRLMISEGADMIDIGAQ---------ST----RPMATKISAEKELERLIPVLEAVLTMPEM---EGKLVSV---- 294 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~e---------St----rP~a~~v~~~eE~~rl~~vi~~l~~~~~~---~~~pISI---- 294 (480)
+..+-|++..++|.|.|+|.+. |. |...-.-|.+.-.+.+..+|+++++.... .+.+|.+
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 3445677888899999999863 32 22111234566677788899999876420 2455554
Q ss_pred eCC-----CHH----HHHHHHHcCCCEEecCCC
Q 038230 295 DTF-----YSK----VASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 295 DT~-----~~~----v~~aaL~~G~~iINdVsg 318 (480)
+-+ .++ +++..-+.|+|+|+ |++
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~-Vs~ 256 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLH-ISL 256 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEE-ecc
Confidence 221 222 33444456999998 554
No 312
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=77.57 E-value=39 Score=35.47 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c-------------------hHH
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P-------------------DMY 326 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~-------------------~m~ 326 (480)
+..+++..++.. -..-+..+++.+.+++.+++ +.++|-.++..... . -+.
T Consensus 4 ~k~iL~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (345)
T cd00946 4 VLKLFDYAKENG---FAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVR 80 (345)
T ss_pred HHHHHHHHHHCC---ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHH
Confidence 344555556541 35688999999988887775 88888877653210 1 123
Q ss_pred HHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 327 KVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 327 ~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
.+++++++||++--+.|..+. .+.++.+.+...+.+.++.+.|++ .+.+| |-..+.++|+++-|++
T Consensus 81 ~~A~~~~VPValHLDHg~~~~---------~~~~~~~~~a~~~~~~~a~~~Gft--SVMiD---gS~lp~eENI~~Tkev 146 (345)
T cd00946 81 SMAEHYGVPVVLHTDHCAKKL---------LPWFDGLLEADEEYFKQHGEPLFS--SHMLD---LSEEPLEENIEICKKY 146 (345)
T ss_pred HHHHHCCCCEEEECCCCCCcc---------chhhHHHHHHHHHHHHHhccCCCc--eEEee---CCCCCHHHHHHHHHHH
Confidence 466678999777434443211 112333334444566677788998 89999 4556778888887776
Q ss_pred ----ccCCCcE
Q 038230 407 ----AASHAPI 413 (480)
Q Consensus 407 ----~~~g~Pi 413 (480)
+..|+.+
T Consensus 147 Ve~Ah~~gvsV 157 (345)
T cd00946 147 LERMAKINMWL 157 (345)
T ss_pred HHHHHHcCCEE
Confidence 3455555
No 313
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=77.45 E-value=52 Score=32.91 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=67.4
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY 298 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~ 298 (480)
.|| |-+.|. .|.+...++++.+++.|++-|-++|. |.-+ ...+ .+|..++..++...... ...+.+.+=+.+
T Consensus 9 ~TP--f~~dg~-iD~~~~~~~i~~l~~~Gv~gl~v~Gs-tGE~-~~lt-~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~ 80 (284)
T cd00950 9 VTP--FKDDGS-VDFDALERLIEFQIENGTDGLVVCGT-TGES-PTLS-DEEHEAVIEAVVEAVNG--RVPVIAGTGSNN 80 (284)
T ss_pred eCC--cCCCCC-cCHHHHHHHHHHHHHcCCCEEEECCC-Ccch-hhCC-HHHHHHHHHHHHHHhCC--CCcEEeccCCcc
Confidence 466 765554 79999999999999999999999973 3322 2344 46666665544333221 012334443323
Q ss_pred H-HHH---HHHHHcCCCEEecCCCCCC---CchHHH----HHHhcCCCEEEEcC
Q 038230 299 S-KVA---SEAVGKGAHIVNDVSAGQL---DPDMYK----VVAGLKVPYVAMHM 341 (480)
Q Consensus 299 ~-~v~---~aaL~~G~~iINdVsg~~~---d~~m~~----l~~~~~~~vVlmh~ 341 (480)
. +++ +.|.+.|++-|--+...-. ++++++ ++...+.++++-+.
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3 333 3445569997765543211 234333 44446899998664
No 314
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=77.41 E-value=84 Score=33.77 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-----HHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-----SKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-----~~v~~a 304 (480)
..+.+.-++.|+++.+.|+|.|-|==.| ...++.+ .- .+|+.+++. .++||.+-|-. +-..-+
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDma-----GlltP~~-ay---elVk~iK~~---~~~pv~lHtH~TsG~a~m~ylk 219 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMA-----GLLTPYE-AY---ELVKAIKKE---LPVPVELHTHATSGMAEMTYLK 219 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeeccc-----ccCChHH-HH---HHHHHHHHh---cCCeeEEecccccchHHHHHHH
Confidence 7789999999999999999999886433 1233322 22 346777776 47899886533 345567
Q ss_pred HHHcCCCEEe----cCCCCCCCch
Q 038230 305 AVGKGAHIVN----DVSAGQLDPD 324 (480)
Q Consensus 305 aL~~G~~iIN----dVsg~~~d~~ 324 (480)
|+++|+|+|. ++|++...|.
T Consensus 220 AvEAGvD~iDTAisp~S~gtsqP~ 243 (472)
T COG5016 220 AVEAGVDGIDTAISPLSGGTSQPA 243 (472)
T ss_pred HHHhCcchhhhhhccccCCCCCCc
Confidence 8899999864 5565554443
No 315
>PRK05927 hypothetical protein; Provisional
Probab=77.26 E-value=28 Score=36.43 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe-EEEeCCCHHHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKL-VSVDTFYSKVASEAVG 307 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p-ISIDT~~~~v~~aaL~ 307 (480)
.++.|++++.|++..+.|+.-+-+- |.. |. .+++.+..+++.|++. .| +.+-.+.+..+...-+
T Consensus 75 ~ls~eei~~~a~~~~~~G~~~i~i~--gG~~p~-------~~~e~~~~~i~~ik~~-----~p~l~~~~~s~~ei~~~~~ 140 (350)
T PRK05927 75 LLSFDEFRSLMQRYVSAGVKTVLLQ--GGVHPQ-------LGIDYLEELVRITVKE-----FPSLHPHFFSAVEIAHAAQ 140 (350)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEe--CCCCCC-------CCHHHHHHHHHHHHHH-----CCCCcccCCCHHHHHHHHH
Confidence 5789999999999999999877763 222 32 4577888888888864 34 7777788777753321
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcCCCEEE--EcC--------CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA--MHM--------RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl--mh~--------~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
..|.. .++.+...++.|+..+. +.. .-.|.+. . .++. .+.++.|.+.
T Consensus 141 --------~~G~~-~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~------~----~~~r----l~~i~~A~~l 197 (350)
T PRK05927 141 --------VSGIS-TEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKM------G----PDGW----IQFHKLAHRL 197 (350)
T ss_pred --------hcCCC-HHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCC------C----HHHH----HHHHHHHHHc
Confidence 11332 46666667777774442 110 1112111 0 1111 2567889999
Q ss_pred CCCCCCEEEecCCCCccChhHH---HHHHHhc
Q 038230 378 GIPAWRIIIDPGLGFSKKAEHN---LDILLGL 406 (480)
Q Consensus 378 Gi~~~~IilDPgiGf~k~~~~~---~~~lr~l 406 (480)
|++-.-=+ .+|.+.+.++- +..||++
T Consensus 198 Gi~~~sg~---l~G~gEt~e~ri~~l~~Lr~l 226 (350)
T PRK05927 198 GFRSTATM---MFGHVESPEDILLHLQTLRDA 226 (350)
T ss_pred CCCcCcee---EEeeCCCHHHHHHHHHHHHHh
Confidence 99732211 13557777654 4455555
No 316
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.18 E-value=9.1 Score=38.80 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCCEEEe
Q 038230 234 EAAVSQVRLMISEGADMIDI 253 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDI 253 (480)
++..+.|+.+.+.|||.|++
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEE
Confidence 46778888999999999987
No 317
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=77.16 E-value=73 Score=30.81 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC------------CH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF------------YS 299 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~------------~~ 299 (480)
+.+++++.++... |||+|.+=...-.. .+.+.+...++.|++... ..+.+.+-|. +-
T Consensus 11 ~~~e~~~~~~~~~--~aD~vElR~D~~~~--------~~~~~~~~~~~~lr~~~~-~piI~T~R~~~eGG~~~~~~~~~~ 79 (225)
T cd00502 11 LLEEALSLLELLL--GADAVELRVDLLED--------PSIDDVAEQLSLLRELTP-LPIIFTVRTKSEGGNFEGSEEEYL 79 (225)
T ss_pred CHHHHHHHHHHhc--CCCEEEEEEeeccc--------cchHHHHHHHHHHHHhCC-CCEEEEEcccccCCCcCCCHHHHH
Confidence 4566665555544 99999886532111 113344455666665421 1344444443 23
Q ss_pred HHHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEc-C-CCCCCccccccccchhhHHHHHHHHHHHHHHHHHH
Q 038230 300 KVASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMH-M-RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAEL 376 (480)
Q Consensus 300 ~v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh-~-~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~ 376 (480)
+.++.+++.|+++| ||.-.. .-.+++..+++.++.+|+.+ . .++|.. +.+.+.++++.+
T Consensus 80 ~ll~~~~~~~~d~v-DiEl~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~-----------------~~l~~~~~~~~~ 141 (225)
T cd00502 80 ELLEEALKLGPDYV-DIELDSALLEELINSRKKGNTKIIGSYHDFSGTPSD-----------------EELVSRLEKMAA 141 (225)
T ss_pred HHHHHHHHHCCCEE-EEEecchHHHHHHHHHHhCCCEEEEEeccCCCCcCH-----------------HHHHHHHHHHHH
Confidence 56778888898887 354321 01345555556899999864 3 344421 334567777777
Q ss_pred CCCCCCCEEEecCCCCccChhHHHHHHHhc---c-cCCCcE
Q 038230 377 SGIPAWRIIIDPGLGFSKKAEHNLDILLGL---A-ASHAPI 413 (480)
Q Consensus 377 ~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l---~-~~g~Pi 413 (480)
.|-+-=++. ..+++..+++.+++-. + ..+.|+
T Consensus 142 ~gadivKla-----~~~~~~~D~~~ll~~~~~~~~~~~~p~ 177 (225)
T cd00502 142 LGADIVKIA-----VMANSIEDNLRLLKFTRQVKNLYDIPL 177 (225)
T ss_pred hCCCEEEEE-----ecCCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 775422333 3456677777776554 2 235675
No 318
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.14 E-value=36 Score=34.72 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcCC
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~~ 342 (480)
..+++..++. --..-+.+.++.+.+++.+++ ++++|-.++..... + -+..++.++++||++--+.
T Consensus 7 k~ll~~A~~~---~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH 83 (283)
T PRK07998 7 RILLDRIQEK---HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDH 83 (283)
T ss_pred HHHHHHHHHC---CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcC
Confidence 3445555554 136688999999988888775 88888777653211 1 2445667899998874444
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.++|++ -+-+| |..-..++|++.-+++ +..|+++
T Consensus 84 ~~~----------------------~e~i~~Ai~~Gft--SVM~D---gS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 84 GKT----------------------FEDVKQAVRAGFT--SVMID---GAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CCC----------------------HHHHHHHHHcCCC--EEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 321 1344456788997 89998 3445667888887776 4467776
No 319
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=76.95 E-value=21 Score=39.47 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=59.3
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--- 294 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--- 294 (480)
..++..|+|+++ .+++.+++.++...+.||+.|-+.= |- .+...+++.++ ++.+++.. ++||++
T Consensus 143 ~~~~e~~~Da~r-~d~~~l~~~~~~~~~~Gad~i~l~D--Tv----G~~~P~~v~~l---i~~l~~~~---~v~i~~H~H 209 (524)
T PRK12344 143 IFDAEHFFDGYK-ANPEYALATLKAAAEAGADWVVLCD--TN----GGTLPHEVAEI---VAEVRAAP---GVPLGIHAH 209 (524)
T ss_pred EEcccccccccc-CCHHHHHHHHHHHHhCCCCeEEEcc--CC----CCcCHHHHHHH---HHHHHHhc---CCeEEEEEC
Confidence 356778888876 5889999999999999999987751 21 11223555554 45556552 789999
Q ss_pred eCCCHH--HHHHHHHcCCCEEecC
Q 038230 295 DTFYSK--VASEAVGKGAHIVNDV 316 (480)
Q Consensus 295 DT~~~~--v~~aaL~~G~~iINdV 316 (480)
|++--. -..+|+++|++.|.--
T Consensus 210 ND~GlA~ANslaAi~aGa~~Vd~T 233 (524)
T PRK12344 210 NDSGCAVANSLAAVEAGARQVQGT 233 (524)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEe
Confidence 444443 3467888999998743
No 320
>PRK08445 hypothetical protein; Provisional
Probab=76.93 E-value=24 Score=36.87 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~ 300 (480)
++.|++++.|++..+.|+.-|-+-+ ..+ +.-+.+++..+++.|++... + +.+-++.+.
T Consensus 73 l~~eeI~~~~~~a~~~g~~~i~~~g--g~~------~~~~~e~~~~l~~~Ik~~~p--~--i~~~a~s~~ 130 (348)
T PRK08445 73 LSFEEIDKKIEELLAIGGTQILFQG--GVH------PKLKIEWYENLVSHIAQKYP--T--ITIHGFSAV 130 (348)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCC------CCCCHHHHHHHHHHHHHHCC--C--cEEEEccHH
Confidence 6899999999999999998765422 111 12347788888999997531 1 555554443
No 321
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=76.87 E-value=9.7 Score=40.48 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC---C--CCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH-HH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMAT---K--ISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS-KV 301 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~---~--v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~-~v 301 (480)
+.++-.+.|+++.+.|||.|.+|..+ |+.. . .......+.+..+++.+++. .++||.+ |..+. +.
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSC--Pn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~---~~iPv~vKLsPn~t~i~~i 199 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSC--PHGMPERKMGAAVGQDCDLLEEVCGWINAK---ATVPVWAKMTPNITDITQP 199 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCC--CCCCCcCccchhhccCHHHHHHHHHHHHHh---hcCceEEEeCCChhhHHHH
Confidence 45777788888888999999999743 3221 0 01112345555566666654 3556544 55444 45
Q ss_pred HHHHHHcCCC---EEecCC
Q 038230 302 ASEAVGKGAH---IVNDVS 317 (480)
Q Consensus 302 ~~aaL~~G~~---iINdVs 317 (480)
+++|++.|++ +||.+.
T Consensus 200 a~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 200 ARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHhCCCEEEEecccC
Confidence 5556777665 777665
No 322
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=76.57 E-value=26 Score=35.46 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=65.9
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT 296 (480)
+|| |.+.|. .|.+...++++.+++.| ++-|=++| ||.-+. ..+. ||..++.. +++..... ..+.+.+=+
T Consensus 9 ~TP--f~~dg~-iD~~~~~~~i~~~i~~G~v~gi~~~G-stGE~~-~Lt~-eEr~~~~~~~~~~~~~~---~pvi~gv~~ 79 (290)
T TIGR00683 9 LVS--FNEDGT-INEKGLRQIIRHNIDKMKVDGLYVGG-STGENF-MLST-EEKKEIFRIAKDEAKDQ---IALIAQVGS 79 (290)
T ss_pred ecC--CCCCCC-cCHHHHHHHHHHHHhCCCcCEEEECC-cccccc-cCCH-HHHHHHHHHHHHHhCCC---CcEEEecCC
Confidence 466 887774 79999999999999999 99999997 344332 3444 66766654 33333221 133445533
Q ss_pred CCHH-HH---HHHHHcCCCEEecCCCCCC---CchHH----HHHHhc-CCCEEEEcC
Q 038230 297 FYSK-VA---SEAVGKGAHIVNDVSAGQL---DPDMY----KVVAGL-KVPYVAMHM 341 (480)
Q Consensus 297 ~~~~-v~---~aaL~~G~~iINdVsg~~~---d~~m~----~l~~~~-~~~vVlmh~ 341 (480)
.+.+ ++ +.|-+.|+|-+--+...-. +++++ +++... +.|+++-+.
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~ 136 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSI 136 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeC
Confidence 3332 22 3334458876665443111 13332 233344 578887654
No 323
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=76.53 E-value=58 Score=31.36 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---------------CH-HH
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---------------YS-KV 301 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---------------~~-~v 301 (480)
+.++++.+.||+.+=+|... .++.+.+..+++.+... .+.+|||.. ++ +.
T Consensus 85 ed~~~~~~~Ga~~vvlgs~~----------l~d~~~~~~~~~~~g~~----~i~~sid~~~~~v~~~g~~~~~~~~~~~~ 150 (230)
T TIGR00007 85 EDVEKLLDLGVDRVIIGTAA----------VENPDLVKELLKEYGPE----RIVVSLDARGGEVAVKGWLEKSEVSLEEL 150 (230)
T ss_pred HHHHHHHHcCCCEEEEChHH----------hhCHHHHHHHHHHhCCC----cEEEEEEEECCEEEEcCCcccCCCCHHHH
Confidence 35577778999999888532 12344555555555322 578899843 32 34
Q ss_pred HHHHHHcCCC--EEecCCC
Q 038230 302 ASEAVGKGAH--IVNDVSA 318 (480)
Q Consensus 302 ~~aaL~~G~~--iINdVsg 318 (480)
++...+.|++ ++.|++.
T Consensus 151 ~~~~~~~g~~~ii~~~~~~ 169 (230)
T TIGR00007 151 AKRLEELGLEGIIYTDISR 169 (230)
T ss_pred HHHHHhCCCCEEEEEeecC
Confidence 5555666777 4455654
No 324
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=76.40 E-value=1e+02 Score=32.15 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC----CCHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT----FYSKVASEA 305 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT----~~~~v~~aa 305 (480)
..+.+++++.|..|-+.||.| .|| ++-.+++|...+++.+++.+. .+.-+-+=| .+.+.+++-
T Consensus 64 V~~~eDii~ea~~~~a~Gasi--TGG----------dPl~~ieR~~~~ir~LK~efG-~~fHiHLYT~g~~~~~e~l~~L 130 (353)
T COG2108 64 VKSVEDIIEEAKLMDALGASI--TGG----------DPLLEIERTVEYIRLLKDEFG-EDFHIHLYTTGILATEEALKAL 130 (353)
T ss_pred cCcHHHHHHHHHHhccccccc--cCC----------ChHHHHHHHHHHHHHHHHhhc-cceeEEEeeccccCCHHHHHHH
Confidence 567899999999999999876 243 245789999999999998752 134444444 677788777
Q ss_pred HHcCCCEEe---cCCCCCC---CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 306 VGKGAHIVN---DVSAGQL---DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 306 L~~G~~iIN---dVsg~~~---d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
-++|-|=|- +..+... ..+++.+|++||..+=+ .+..+|. . + +.+.+.++.+.+.|.
T Consensus 131 ~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~-EiPaipg---~------e-------~~i~e~~~~~~~~~~ 193 (353)
T COG2108 131 AEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGV-EIPAIPG---E------E-------EAILEFAKALDENGL 193 (353)
T ss_pred HhCCCCeEEecCCCccccccHHHHHHHHHHHHhCcccee-ecCCCcc---h------H-------HHHHHHHHHHHhccc
Confidence 778877442 1111111 24678888899866544 2222231 1 1 233455555666665
Q ss_pred CCCCEEEec-CCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCC
Q 038230 380 PAWRIIIDP-GLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHN 458 (480)
Q Consensus 380 ~~~~IilDP-giGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHd 458 (480)
+ ++-- =+-|.. .|++-++. -|+..-=+.| + .++.+.-.++ -.+.....=.=+-||.
T Consensus 194 ~----FlNiNELE~sE---~N~~~l~~---~gy~~~~~~~---~--------av~GS~E~~L--k~l~~~~~~~~l~vH~ 250 (353)
T COG2108 194 D----FLNINELEFSE---NNYENLLE---RGYKISDDGS---S--------AVAGSLEAAL--KVLKWAEENWDLTVHY 250 (353)
T ss_pred c----eeeeeeeeecc---chHHHHHh---cCceeccCCc---c--------cccchHHHHH--HHHHHHhcccCceEEE
Confidence 4 2211 122333 35554544 2332221111 0 0122222222 2222222213456777
Q ss_pred -hHHHHHHHHHHHHHHhhhhc
Q 038230 459 -IRDNLDAVKLCDSMLTRRKS 478 (480)
Q Consensus 459 -V~e~~~al~~~~ai~~~~~~ 478 (480)
...+++|+++...+++..|.
T Consensus 251 Css~~KDavQ~r~Rl~r~Akn 271 (353)
T COG2108 251 CSSKFKDAVQLRNRLKRMAKN 271 (353)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 45689999999888776553
No 325
>PLN02438 inositol-3-phosphate synthase
Probab=76.31 E-value=22 Score=38.88 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=79.4
Q ss_pred ccCCHHHHHHHHHHHHH-cCC-CEEEeCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMIS-EGA-DMIDIGAQSTRPMATKI-SAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEA 305 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~-~GA-diIDIG~eStrP~a~~v-~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aa 305 (480)
+....+.+.+..+.+.+ .|. .+|-|...||.|.++.. ..-+.++.+ .++|.+. +-.|| .+.--+.+|
T Consensus 202 k~e~ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l---~~ai~~~----~~eis---pS~~YA~AA 271 (510)
T PLN02438 202 KKEQMDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENL---LASIEKD----EAEIS---PSTLYALAC 271 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHH---HHHHhcC----CCcCC---hHHHHHHHH
Confidence 33445556666666655 444 58889999999976532 222334444 3455543 11222 334456788
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii 385 (480)
+++|+..||-.-.....|.+.+++++.|++++--.... .+|. +. .-+++.+..+|+....++
T Consensus 272 l~eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KS-GqT~-----------~k------svLa~~l~~RGlkv~s~~ 333 (510)
T PLN02438 272 ILEGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKS-GQTK-----------MK------SVLVDFLVGAGIKPTSIV 333 (510)
T ss_pred HHcCCCeEecCCccccChhhHHHHHHcCCCEecccccC-CCch-----------hH------HHHHHHHHHcCCceeeEE
Confidence 99999999977644457999999999999977533221 2221 11 234556678899876654
No 326
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=76.12 E-value=69 Score=39.17 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCCCCCCCCccCCHHHHHH----HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--
Q 038230 220 TPDSFSDGGKFQSVEAAVS----QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-- 293 (480)
Q Consensus 220 tpDSFsdgg~~~~~e~a~~----~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-- 293 (480)
.||+.+.|-...+.+++.+ +++.+++.|+|+|=+-. -|. -.|.+-....++...+... .++|+.
T Consensus 146 ~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliET---i~d------~~EakAal~a~~~~~~~~~-~~lPv~vS 215 (1229)
T PRK09490 146 SPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIET---IFD------TLNAKAAIFAVEEVFEELG-VRLPVMIS 215 (1229)
T ss_pred CCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEee---eCC------HHHHHHHHHHHHHHHhhcC-CCCeEEEE
Confidence 3777666533467776664 47778899999999863 332 3556555555554421110 245533
Q ss_pred --E-eC-------CCHHHHHHHHHc-CCCEEecCCCCCCCchHHHHHHh----cCCCEEEEcCCCCCCccccccccchhh
Q 038230 294 --V-DT-------FYSKVASEAVGK-GAHIVNDVSAGQLDPDMYKVVAG----LKVPYVAMHMRGDPSTMQNEENLQYDD 358 (480)
Q Consensus 294 --I-DT-------~~~~v~~aaL~~-G~~iINdVsg~~~d~~m~~l~~~----~~~~vVlmh~~g~p~~~~~~~~~~~~~ 358 (480)
+ |. ...+.+-..++. |++.|- +++...-+.|.+++++ .+.++.+.++-|.|..... |+.
T Consensus 216 ~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avG-lNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~-----yd~ 289 (1229)
T PRK09490 216 GTITDASGRTLSGQTTEAFWNSLRHAKPLSIG-LNCALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGE-----YDE 289 (1229)
T ss_pred EEEECCCCccCCCCcHHHHHHHHhcCCCCEEE-EcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCC-----CCC
Confidence 3 41 445555555543 766543 4454323456666654 3688999999999875432 332
Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCEEEecCCCCccChhHHHHHHHh
Q 038230 359 VCKQVASELYSKVRDAELSG-IPAWRIIIDPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 359 v~~ev~~~l~~~i~~a~~~G-i~~~~IilDPgiGf~k~~~~~~~~lr~ 405 (480)
-. +.|.+.+....+.| +. || |==-|.+++| ++.|++
T Consensus 290 tP----e~~a~~~~~~~~~G~v~---II---GGCCGTtPeH-I~ala~ 326 (1229)
T PRK09490 290 TP----EEMAAQIGEFAESGFLN---IV---GGCCGTTPEH-IAAIAE 326 (1229)
T ss_pred CH----HHHHHHHHHHHHcCCCC---EE---EecCCCCHHH-HHHHHH
Confidence 22 34556666677778 64 43 2114666666 444443
No 327
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=76.07 E-value=1e+02 Score=31.83 Aligned_cols=170 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred CcEEEEEEecCCC--CCCCCCccCCHHHHH----HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc
Q 038230 210 KTSVMGILNLTPD--SFSDGGKFQSVEAAV----SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT 283 (480)
Q Consensus 210 ~~~imGIlN~tpD--SFsdgg~~~~~e~a~----~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~ 283 (480)
+..|.|.+-=|.- |+|.. ...++|+++ ++++-+++.|||+|=|=..+ .-.|.+-....++.+.+
T Consensus 114 ~rfVaGsiGPt~k~~~~~~~-~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~---------D~l~~KaA~~a~~~~~~ 183 (311)
T COG0646 114 PRFVAGSIGPTNKTLSISPD-FAVTFDELVEAYREQVEGLIDGGADLILIETIF---------DTLNAKAAVFAAREVFE 183 (311)
T ss_pred ceEEEEeccCcCCcCCcCCc-ccccHHHHHHHHHHHHHHHHhCCCcEEEEehhc---------cHHHHHHHHHHHHHHHH
Confidence 4556665444432 44442 125566655 55677788999999995322 22445544444444433
Q ss_pred CCcCCCCeEEE----e-------CCCHHHHHHHHHc-CCCEEecCCCCCCCchHHHHHHh----cCCCEEEEcCCCCCCc
Q 038230 284 MPEMEGKLVSV----D-------TFYSKVASEAVGK-GAHIVNDVSAGQLDPDMYKVVAG----LKVPYVAMHMRGDPST 347 (480)
Q Consensus 284 ~~~~~~~pISI----D-------T~~~~v~~aaL~~-G~~iINdVsg~~~d~~m~~l~~~----~~~~vVlmh~~g~p~~ 347 (480)
... ..+||.+ + -..++.+-..|+. |++++- ++....-+.|.+.+.+ .++.|.++++-|.|.-
T Consensus 184 ~~~-~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~~~vG-lNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~ 261 (311)
T COG0646 184 ELG-VRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGPDAVG-LNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNA 261 (311)
T ss_pred hcC-CcccEEEEEEEecCceecCCCcHHHHHHHhhccCCcEEe-eccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcc
Confidence 211 2466544 2 2456666666765 877664 4444433566666554 5788889999999987
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCC-CCCCCEEEecCCCCccChhHHHHHHH
Q 038230 348 MQNEENLQYDDVCKQVASELYSKVRDAELSG-IPAWRIIIDPGLGFSKKAEHNLDILL 404 (480)
Q Consensus 348 ~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G-i~~~~IilDPgiGf~k~~~~~~~~lr 404 (480)
..++.. |+... +++.+.++.+.+.| + ||| |==-|.+++| ++.++
T Consensus 262 ~g~~~~--Y~~~p----~~~a~~~~~f~~~g~v---nIv---GGCCGTTPeH-Iraia 306 (311)
T COG0646 262 FGERAV--YDLTP----EYMAEALAEFAEEGGV---NIV---GGCCGTTPEH-IRAIA 306 (311)
T ss_pred cCCccc--cCCCH----HHHHHHHHHHHHhCCc---eee---ccccCCCHHH-HHHHH
Confidence 665432 33333 45666776665555 6 454 2214777777 44443
No 328
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=76.05 E-value=12 Score=38.12 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=30.0
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeC
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIG 254 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG 254 (480)
.||+-=|+|.-+ ...+++++||+.+.++|||.|=+=
T Consensus 154 ~IiARTDa~~~~---~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 154 MIIARVESLILG---KGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred EEEEeccccccc---CCHHHHHHHHHHHHHcCCCEEEec
Confidence 677788888543 247999999999999999999994
No 329
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=75.83 E-value=87 Score=32.14 Aligned_cols=102 Identities=21% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEeCCCHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRP-------MATKISAEKELERLIPVLEAVLTMPEMEGKLV--SVDTFYSKV 301 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-------~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SIDT~~~~v 301 (480)
.+...+...++++.+.||.-|=|-=+ +.| +...++.++-.+|+.-+.++-. . .++.| -.|++...-
T Consensus 89 G~~~~v~r~V~~~~~aGaagi~IEDq-~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~-~---~d~~I~ARTDa~~~~g 163 (294)
T TIGR02319 89 GNAMSVWRATREFERVGIVGYHLEDQ-VNPKRCGHLEGKRLISTEEMTGKIEAAVEARE-D---EDFTIIARTDARESFG 163 (294)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECC-CCccccCCCCCccccCHHHHHHHHHHHHHhcc-C---CCeEEEEEecccccCC
Confidence 33444677889999999988777422 223 3345777666666655443322 2 13222 237754333
Q ss_pred HHHHHH-------cCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 302 ASEAVG-------KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 302 ~~aaL~-------~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
+++|++ +|||+|- +-+.+..+++..++++.+.|++.
T Consensus 164 ~deaI~Ra~aY~eAGAD~if-i~~~~~~~ei~~~~~~~~~P~~~ 206 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIF-LEAMLDVEEMKRVRDEIDAPLLA 206 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEE-ecCCCCHHHHHHHHHhcCCCeeE
Confidence 444443 5999998 55555347788999998888743
No 330
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=75.76 E-value=10 Score=38.34 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-----EEEeCCCC----CCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHH
Q 038230 231 QSVEAAVSQVRLMISEGAD-----MIDIGAQS----TRP-MATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSK 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAd-----iIDIG~eS----trP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~ 300 (480)
-|.+.+++-|+++.+.|+. ++-.|+-- |.| +....-.+.-++.+.. +++. .++|+.-|-.+|.
T Consensus 27 es~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l~~----v~~~---~glpv~tEv~~~~ 99 (270)
T PF00793_consen 27 ESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDILSE----VKEG---LGLPVATEVLDPE 99 (270)
T ss_dssp S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHHHH----HHHH---HT-EEEEEESSGG
T ss_pred CCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhHHH----HHhh---hCCeeeEEecCcc
Confidence 5789999999999999999 55555431 334 3444544444666543 3443 2899999999999
Q ss_pred HHHHHHHcCCCEEecCCCCC-CCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 301 VASEAVGKGAHIVNDVSAGQ-LDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~-~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
.++.+.+. ++|+- |.+.+ ....+++.+.+.+.||.+=-.. -.+ + +.+....+.....|+
T Consensus 100 ~~~~~~d~-vd~lq-IgAr~~~n~~ll~~as~~~~pV~~K~g~--~~a------------i----~~~~~Aae~~~~~G~ 159 (270)
T PF00793_consen 100 QAEYVADL-VDWLQ-IGARLMENQDLLEAASGTGKPVGFKNGT--FAA------------I----DEWLAAAEKHLFLGI 159 (270)
T ss_dssp GHHHHHTT-ESEEE-E-GGGTTCHHHHHHHHCTSSEEEEEE-T--TSH------------G----GGHHHHHHHHHHTTE
T ss_pred cHHHHHhc-CcEEE-ECcchhcCHHHHHHhccCCCeEEeccCC--ccC------------H----HHHHHHHhhhhhhcC
Confidence 99999887 67664 54433 2377899999999888874321 111 1 122345566678887
Q ss_pred CCCCEEEecCCCCccCh---hHHHHHHHhc-ccCCCcEEEeeccccccccccCCCCcCcccH-HHHHHHHHHHHcCCc--
Q 038230 380 PAWRIIIDPGLGFSKKA---EHNLDILLGL-AASHAPILIGPSRKRFLGEICNRPSADERDP-ATIASITAGVLGGAN-- 452 (480)
Q Consensus 380 ~~~~IilDPgiGf~k~~---~~~~~~lr~l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~-~t~a~~~~a~~~Ga~-- 452 (480)
...++.-.=|+-|+.+. ...+..+..+ +..++|+++=.|. ..+.++..+|.. ...+.+ ++..|++
T Consensus 160 n~~~~l~erglr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH------~~~~~~~~~q~~V~~~a~a--aia~GidGl 231 (270)
T PF00793_consen 160 NSGNILCERGLRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSH------ANSRKDGGRQELVPPLARA--AIAAGIDGL 231 (270)
T ss_dssp CSSEEEEEEEEEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHH------HTTTCGGGGHCGHHHHHHH--HHHHTESEE
T ss_pred CCCCeeeeeeeeccccccccchhHHHHHHHHHhcCCCEEECchh------hhccccCCchhhHHHHHHH--HHhhcCCEE
Confidence 44555556565444422 2223223322 2347899995542 222221122222 344433 4455554
Q ss_pred EEEcCCh
Q 038230 453 IVRVHNI 459 (480)
Q Consensus 453 IlRvHdV 459 (480)
++-+|-.
T Consensus 232 miEsH~~ 238 (270)
T PF00793_consen 232 MIESHPD 238 (270)
T ss_dssp EEEEESS
T ss_pred EEeecCC
Confidence 7888873
No 331
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=75.57 E-value=72 Score=33.65 Aligned_cols=121 Identities=13% Similarity=0.022 Sum_probs=69.1
Q ss_pred CCCCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEE-EeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230 207 WSLKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMI-DIGAQSTRPMATKISAEKELERLIPVLEAVLTMP 285 (480)
Q Consensus 207 ~~~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiI-DIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~ 285 (480)
...+|.++.|++ || + -+|+++..+.+.++++.|+|.| |-|....-| ..+.+|=++.+..+++...++.
T Consensus 127 v~~rPli~Ti~k--p~----~--gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~---~~~~eER~~~v~~av~~a~~~T 195 (367)
T cd08205 127 VHDRPLLGTIIK--PS----I--GLSPEELAELAYELALGGIDLIKDDELLADQP---YAPFEERVRACMEAVRRANEET 195 (367)
T ss_pred CCCCCeeeeeeC--CC----C--CCCHHHHHHHHHHHHhcCCCeeeccccccCcc---cCCHHHHHHHHHHHHHHHHHhh
Confidence 345788888876 42 2 3688999999999999999998 776433222 3445555666677777777331
Q ss_pred cC-CCCeEEEeCCCHHHHH---HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 286 EM-EGKLVSVDTFYSKVAS---EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 286 ~~-~~~pISIDT~~~~v~~---aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
.. .-+...|.....+.++ .|.++|++.+.-....-.-..+-.+..+.+.++..
T Consensus 196 G~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~ 252 (367)
T cd08205 196 GRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMA 252 (367)
T ss_pred CCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEE
Confidence 11 1123444333344444 34556887544222211123444555555444443
No 332
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.50 E-value=40 Score=35.10 Aligned_cols=83 Identities=28% Similarity=0.279 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCC---------CC----CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe----EEEeC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQ---------ST----RPMATKISAEKELERLIPVLEAVLTMPEMEGKL----VSVDT 296 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~e---------St----rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p----ISIDT 296 (480)
++..+-|++..++|.|.|||.+. |. |...-.-|.+.-.+-+..+++++++... .+++ +|.+.
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~~~ 219 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeEEEEeehhh
Confidence 34445677888999999999983 32 2111123566677888899999998642 2444 44332
Q ss_pred -----CCHH----HHHHHHHcC-CCEEecCCC
Q 038230 297 -----FYSK----VASEAVGKG-AHIVNDVSA 318 (480)
Q Consensus 297 -----~~~~----v~~aaL~~G-~~iINdVsg 318 (480)
..++ .++...++| +|+|. |++
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~-vs~ 250 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVN-VSA 250 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEE-eCC
Confidence 2232 223333457 89987 654
No 333
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=75.46 E-value=72 Score=29.88 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCC-cCCCCeEEEeCCCHHHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMP-EMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~-~~~~~pISIDT~~~~v~~aaL~ 307 (480)
.|+....+.++.+.+.|++.|=++... .-|... ++ . ..++.|++.. ...++.+-++.. .+.++.+.+
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~-~~----~----~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~ 78 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLT-FG----P----PVVKALRKHTDLPLDVHLMVENP-ERYIEAFAK 78 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccc-cC----H----HHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHH
Confidence 566677888999999999999875321 122211 11 1 1234444321 001233444322 356888889
Q ss_pred cCCCEEecCCCCCC--CchHHHHHHhcCCCEEEEc
Q 038230 308 KGAHIVNDVSAGQL--DPDMYKVVAGLKVPYVAMH 340 (480)
Q Consensus 308 ~G~~iINdVsg~~~--d~~m~~l~~~~~~~vVlmh 340 (480)
+|++.+- +-++.. ..+.++.+++++..+++.-
T Consensus 79 ~g~dgv~-vh~~~~~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 79 AGADIIT-FHAEATDHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred cCCCEEE-ECccchhhHHHHHHHHHHCCCeEEEEe
Confidence 9999852 222221 2456777788888777654
No 334
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=75.44 E-value=26 Score=37.54 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=62.6
Q ss_pred CeEEEeCCCHHHHHHHHHc----CCCEEecCCCC--------CC-C-----chHHHHHHhcCCC---EEEEcCCCCCCcc
Q 038230 290 KLVSVDTFYSKVASEAVGK----GAHIVNDVSAG--------QL-D-----PDMYKVVAGLKVP---YVAMHMRGDPSTM 348 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~----G~~iINdVsg~--------~~-d-----~~m~~l~~~~~~~---vVlmh~~g~p~~~ 348 (480)
-..||.|.+|-|+++|++. |..++---|.. +. . .-+..+|.+.|.+ +++.-+.+-|..=
T Consensus 14 gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~W 93 (420)
T TIGR02810 14 GIYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPW 93 (420)
T ss_pred eEEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccc
Confidence 4599999999999999886 54443222211 11 1 2356777778876 4665555556433
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC
Q 038230 349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392 (480)
Q Consensus 349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf 392 (480)
|..+ .++-++..++.+..-.++|++ +|-|||-++-
T Consensus 94 q~lp-------a~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~c 128 (420)
T TIGR02810 94 QHLP-------ADEAMAKAAALVDAYVEAGFT--KIHLDASMGC 128 (420)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHcCCc--eEEecCCCCc
Confidence 3321 345567778889999999998 9999997663
No 335
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.41 E-value=40 Score=33.72 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=68.8
Q ss_pred CcEEEEEEec-CCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230 210 KTSVMGILNL-TPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME 288 (480)
Q Consensus 210 ~~~imGIlN~-tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~ 288 (480)
++.|.+-++- +| |.| ......+..+.|+.+.+.||+-|-+-.+... -.-+ -+. ++.+++. .
T Consensus 49 ~~~vIaeik~~sp---s~g-~i~~~~~~~~~A~~~~~~GA~aisvlte~~~---f~g~-~~~-------l~~v~~~---v 110 (260)
T PRK00278 49 KPAVIAEVKKASP---SKG-VIREDFDPVEIAKAYEAGGAACLSVLTDERF---FQGS-LEY-------LRAARAA---V 110 (260)
T ss_pred CCeEEEEeeCCCC---CCC-ccCCCCCHHHHHHHHHhCCCeEEEEeccccc---CCCC-HHH-------HHHHHHh---c
Confidence 3567776666 55 323 2223345678999999999999988543222 1111 122 3333443 3
Q ss_pred CCeEEEe--CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcC
Q 038230 289 GKLVSVD--TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHM 341 (480)
Q Consensus 289 ~~pISID--T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~ 341 (480)
++||... ..++..+.+|.++|||+|.-+...... .++++.++++|..+++ +|+
T Consensus 111 ~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 111 SLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6676532 224447889999999988765443212 5688888889977665 343
No 336
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=75.37 E-value=61 Score=35.65 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=76.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL 306 (480)
+..+++++++.++.+++.|+.-|.+-++...- |.+.-+ ...+. .+++.+.+. .++ .|.+-+.+|.
T Consensus 184 rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~-~~~l~---~Ll~~l~~i---~~l~~ir~~~~~p~------ 250 (502)
T PRK14326 184 KDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGD-RGAFS---KLLRACGEI---DGLERVRFTSPHPA------ 250 (502)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCC-HHHHH---HHHHHHHhc---CCccEEEEeccChh------
Confidence 45789999999999999999888664432211 111111 12233 334444332 122 1333333331
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--C
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS--G 378 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--G 378 (480)
..+++++++.++++ |..+-+..+ |.+. .|.+. +. .+.+.+.++++.++ |
T Consensus 251 -------------~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~--~t--------~~~~~~~v~~lr~~~~~ 307 (502)
T PRK14326 251 -------------EFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRS--YR--------SERFLGILEKVRAAMPD 307 (502)
T ss_pred -------------hCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCC--CC--------HHHHHHHHHHHHHhCCC
Confidence 12577888888886 666665543 2232 23221 11 13445677777775 5
Q ss_pred CCCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 379 IPAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 379 i~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
+ .|..|=.+|| +.+.++-.++++-+
T Consensus 308 i---~i~~~~IvGfPgET~edf~~Tl~~i 333 (502)
T PRK14326 308 A---AITTDIIVGFPGETEEDFQATLDVV 333 (502)
T ss_pred C---eEEEEEEEECCCCCHHHHHHHHHHH
Confidence 5 4788888888 66665555555544
No 337
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=75.30 E-value=91 Score=30.99 Aligned_cols=196 Identities=18% Similarity=0.256 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc--CCC
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK--GAH 311 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~--G~~ 311 (480)
+.+-+.++...+.|.|-|=||| |+ .++ +++ +..+++.|++. +++|+-+--.+++.+....++ =-.
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGG-S~-----gvt-~~~---~~~~v~~ik~~---~~lPvilfP~~~~~is~~aDavff~s 94 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGG-SD-----GVT-EEN---VDNVVEAIKER---TDLPVILFPGSPSGISPYADAVFFPS 94 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECC-cc-----ccc-HHH---HHHHHHHHHhh---cCCCEEEecCChhccCccCCeEEEEE
Confidence 4566788899999999999997 33 233 233 44567777865 599999999999888775543 234
Q ss_pred EEecCCCCCC---CchHHHHHHhcCC-----CEEEEcCCCCCC--ccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 312 IVNDVSAGQL---DPDMYKVVAGLKV-----PYVAMHMRGDPS--TMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 312 iINdVsg~~~---d~~m~~l~~~~~~-----~vVlmh~~g~p~--~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
++||-+..-- .-+-++++.+++- +||++...+.-. +..+..++..+++. ......+ +=.|.+
T Consensus 95 vLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~ia-----a~y~la~--~~~g~~- 166 (240)
T COG1646 95 VLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIA-----AYYALAE--KYLGMP- 166 (240)
T ss_pred EecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHH-----HHHHHHH--HHhCCe-
Confidence 5665543210 0234566666654 445554333211 11111112212221 1112222 345776
Q ss_pred CCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcCChHH
Q 038230 382 WRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVHNIRD 461 (480)
Q Consensus 382 ~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvHdV~e 461 (480)
=++|.=|-|++.... -+.+++.+ ...|+++| |-. |...++ ...+..|||+|-|=++-+
T Consensus 167 -~~YlEagsga~~Pv~--~e~v~~v~-~~~~LivG-----------GGI----rs~E~A---~~~a~agAD~IVtG~iie 224 (240)
T COG1646 167 -VVYLEAGSGAGDPVP--VEMVSRVL-SDTPLIVG-----------GGI----RSPEQA---REMAEAGADTIVTGTIIE 224 (240)
T ss_pred -EEEEEecCCCCCCcC--HHHHHHhh-ccceEEEc-----------CCc----CCHHHH---HHHHHcCCCEEEECceee
Confidence 689999888876532 23455532 12388887 322 333333 455667999999988533
Q ss_pred --HHHHHHHHHHH
Q 038230 462 --NLDAVKLCDSM 472 (480)
Q Consensus 462 --~~~al~~~~ai 472 (480)
-..++++..++
T Consensus 225 e~~~~~~~~v~~~ 237 (240)
T COG1646 225 EDPDKALETVEAI 237 (240)
T ss_pred cCHHHHHHHHHHh
Confidence 23444444443
No 338
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=75.02 E-value=25 Score=35.17 Aligned_cols=118 Identities=30% Similarity=0.323 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----------eCCCHHH--
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----------DTFYSKV-- 301 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----------DT~~~~v-- 301 (480)
+..+..+++.++.|||-+|+-.- .+. ...++..+.+..+.+..++. ++|+-+ +.++++.
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~---~g~--~~~~~~~~~~~~v~~~~~~~----g~pl~vi~~~~g~~~e~~~~~~~i~ 163 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVN---VGS--ETEAEMLEDLGEVAEECEEW----GMPLLAMMYPRGPGIKNEYDPEVVA 163 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEe---cCC--hhHHHHHHHHHHHHHHHHHc----CCcEEEEEecCCCccCCCccHHHHH
Confidence 34556678889999999998632 111 11233333444444444433 666544 2234444
Q ss_pred --HHHHHHcCCCEEecCCCCCCCch-HHHHHHhcCCCEEEEcCCCCCC-ccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 302 --ASEAVGKGAHIVNDVSAGQLDPD-MYKVVAGLKVPYVAMHMRGDPS-TMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 302 --~~aaL~~G~~iINdVsg~~~d~~-m~~l~~~~~~~vVlmh~~g~p~-~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
++.|.+.|+|+|---. ..+.+ |-++++...+||++. .|+.. |. +.+.+.+..+.++
T Consensus 164 ~a~~~a~e~GAD~vKt~~--~~~~~~l~~~~~~~~ipV~a~--GGi~~~~~----------------~~~l~~v~~~~~a 223 (267)
T PRK07226 164 HAARVAAELGADIVKTNY--TGDPESFREVVEGCPVPVVIA--GGPKTDTD----------------REFLEMVRDAMEA 223 (267)
T ss_pred HHHHHHHHHCCCEEeeCC--CCCHHHHHHHHHhCCCCEEEE--eCCCCCCH----------------HHHHHHHHHHHHc
Confidence 4666677999996322 22334 445555567888653 34431 11 3345667777788
Q ss_pred CCC
Q 038230 378 GIP 380 (480)
Q Consensus 378 Gi~ 380 (480)
|..
T Consensus 224 GA~ 226 (267)
T PRK07226 224 GAA 226 (267)
T ss_pred CCc
Confidence 875
No 339
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.01 E-value=41 Score=32.52 Aligned_cols=89 Identities=17% Similarity=0.322 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC-CCHHHHHHHHHcCC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT-FYSKVASEAVGKGA 310 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT-~~~~v~~aaL~~G~ 310 (480)
+.+++++.++.+++.|..+|.|=. +.|++ .+ .|+.+++... .++.|..=| ..++-++.|+++|+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~--~~~~~-----~~-------~i~~l~~~~~-~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL--NSPDP-----FD-------SIAALVKALG-DRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CCccH-----HH-------HHHHHHHHcC-CCcEEeEEecCCHHHHHHHHHcCC
Confidence 579999999999999999999974 22321 12 3455554421 134455444 57889999999999
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEE
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVA 338 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVl 338 (480)
+.| +++.. ++++.+.+.+++..++.
T Consensus 85 ~fi--vsp~~-~~~v~~~~~~~~~~~~~ 109 (206)
T PRK09140 85 RLI--VTPNT-DPEVIRRAVALGMVVMP 109 (206)
T ss_pred CEE--ECCCC-CHHHHHHHHHCCCcEEc
Confidence 999 45443 78999999999988775
No 340
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=74.95 E-value=76 Score=29.93 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH----HHHHHHHHcCCCEEe
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS----KVASEAVGKGAHIVN 314 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~----~v~~aaL~~G~~iIN 314 (480)
.++++.+.|||+|=+-++++. ..+ ..+++.+++. ++++.++-.++ +.++.+++.|++++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~---------~~~---~~~i~~~~~~----g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD---------ATI---KGAVKAAKKH----GKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH---------HHH---HHHHHHHHHc----CCEEEEEecCCCChHHHHHHHHHcCCCEEE
Confidence 577889999999998876421 222 3345556664 78888774333 677777888888884
No 341
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=74.83 E-value=45 Score=33.20 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=59.5
Q ss_pred CCCCCccC-CHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-e---CC
Q 038230 224 FSDGGKFQ-SVEAAVSQVRLMISEG-ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-D---TF 297 (480)
Q Consensus 224 Fsdgg~~~-~~e~a~~~A~~~v~~G-AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-D---T~ 297 (480)
-.+||.+. +.++-++.-+..++.| +|+|||=.. .+ ++. +..+++..++.. +.+.+|- | |.
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~--~~-------~~~---~~~l~~~~~~~~--~kvI~S~H~f~~tP 149 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELF--SG-------KDV---VKEMVAFAHEHG--VKVVLSYHDFEKTP 149 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc--CC-------hHH---HHHHHHHHHHcC--CEEEEeeCCCCCCc
Confidence 45677663 4455555566677888 999999532 21 122 334455555431 3566776 2 33
Q ss_pred CH----HHHHHHHHcCCCEEecCCCCCCCc---hHHHHHHh-----cCCCEEEEcCC
Q 038230 298 YS----KVASEAVGKGAHIVNDVSAGQLDP---DMYKVVAG-----LKVPYVAMHMR 342 (480)
Q Consensus 298 ~~----~v~~aaL~~G~~iINdVsg~~~d~---~m~~l~~~-----~~~~vVlmh~~ 342 (480)
.. +.++++.+.|+|++-=+...+... +++.+..+ .+.|+|.|.|.
T Consensus 150 ~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG 206 (253)
T PRK02412 150 PKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMG 206 (253)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 22 345555667999887665443222 34333322 46899988874
No 342
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=74.75 E-value=27 Score=37.53 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=62.8
Q ss_pred CeEEEeCCCHHHHHHHHHc----CCCEEecCCCC--------CC-Cc-----hHHHHHHhcCCC---EEEEcCCCCCCcc
Q 038230 290 KLVSVDTFYSKVASEAVGK----GAHIVNDVSAG--------QL-DP-----DMYKVVAGLKVP---YVAMHMRGDPSTM 348 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~----G~~iINdVsg~--------~~-d~-----~m~~l~~~~~~~---vVlmh~~g~p~~~ 348 (480)
-..||.|.+|-|+++|++. |..++---|.. +. .| -+..+|.+.|.+ +++.-+.+-|..=
T Consensus 18 gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~W 97 (426)
T PRK15458 18 GIYAVCSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRW 97 (426)
T ss_pred eEEEecCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCccc
Confidence 4699999999999999886 54443222211 11 12 356777788876 4665555556433
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC
Q 038230 349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392 (480)
Q Consensus 349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf 392 (480)
|..+ .++-++..++.+..-.++|++ +|-|||-++-
T Consensus 98 q~lp-------a~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~c 132 (426)
T PRK15458 98 QNLP-------AAQAMANADDLIKSYVAAGFK--KIHLDCSMSC 132 (426)
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHcCCc--eEEecCCCCC
Confidence 3321 345567778889999999998 9999997765
No 343
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=74.71 E-value=37 Score=33.67 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=59.7
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE--EeCCC-------
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS--VDTFY------- 298 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS--IDT~~------- 298 (480)
|-+.+++.+.+.++++++.||+-|-|=.+ .| +.+.|+.+++. .++|. +|++.
T Consensus 83 G~g~~~~~~~~~~~~l~~aGa~gv~iED~------------~~---~~~~i~ai~~a----~i~ViaRtd~~pq~~~~~g 143 (240)
T cd06556 83 GAYGAPTAAFELAKTFMRAGAAGVKIEGG------------EW---HIETLQMLTAA----AVPVIAHTGLTPQSVNTSG 143 (240)
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEEEEcCc------------HH---HHHHHHHHHHc----CCeEEEEeCCchhhhhccC
Confidence 44456789999999999999999999542 12 33456666654 34443 46532
Q ss_pred --------H----HHHHHHH---HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 299 --------S----KVASEAV---GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 299 --------~----~v~~aaL---~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
. +.++.|. ++|+++|- +.+- ..+.+..+.++.+.|++.+-.
T Consensus 144 g~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~-~e~~-~~e~~~~i~~~~~~P~~~~ga 199 (240)
T cd06556 144 GDEGQYRGDEAGEQLIADALAYAPAGADLIV-MECV-PVELAKQITEALAIPLAGIGA 199 (240)
T ss_pred CceeeccCHHHHHHHHHHHHHHHHcCCCEEE-EcCC-CHHHHHHHHHhCCCCEEEEec
Confidence 2 2333332 35999997 4443 236677788888899987644
No 344
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=74.66 E-value=9.5 Score=37.78 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=31.9
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCC
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGA 255 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~ 255 (480)
.||+-=|+|.-| ..+.++++++++.+.++|||.|=+=+
T Consensus 144 ~IiARTDa~~~~--~~~~~eai~Ra~ay~~AGAD~v~v~~ 181 (243)
T cd00377 144 VIIARTDALLAG--EEGLDEAIERAKAYAEAGADGIFVEG 181 (243)
T ss_pred EEEEEcCchhcc--CCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 677788999876 23579999999999999999999954
No 345
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=74.59 E-value=48 Score=35.19 Aligned_cols=140 Identities=17% Similarity=0.314 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAVG 307 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL~ 307 (480)
+..+++.+++.++.+++.|+.-|-+-++...-....... -.++..+++.+.+.. +. .+.+.+.+|.
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~---~~~l~~Ll~~l~~~~---~~~~ir~~~~~p~------- 231 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKN---GTSLAKLLEQILQIP---GIKRIRLSSIDPE------- 231 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCC---CCcHHHHHHHHhcCC---CCcEEEEeCCChh-------
Confidence 557899999999999999997776543221100000000 124555566666431 22 3555444332
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHH--CCC
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAEL--SGI 379 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~--~Gi 379 (480)
..+++++++.++.+ |..+-+..+ |.++ .|.+. +. .+.+.+.++.+.+ .|+
T Consensus 232 ------------~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~--~~--------~~~~~~~v~~l~~~~~gi 289 (414)
T TIGR01579 232 ------------DIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRK--YT--------RDDFLKLVNKLRSVRPDY 289 (414)
T ss_pred ------------hCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCC--CC--------HHHHHHHHHHHHHhCCCC
Confidence 12567788877765 665555442 2332 22221 11 1345577777777 788
Q ss_pred CCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 380 PAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 380 ~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
. +..|=.+|| +.+.++-.++++-+
T Consensus 290 ~---i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 290 A---FGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred e---eeeeEEEECCCCCHHHHHHHHHHH
Confidence 4 777777787 56655444444443
No 346
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=74.42 E-value=30 Score=36.95 Aligned_cols=116 Identities=15% Similarity=0.244 Sum_probs=61.3
Q ss_pred chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe-cCCCCccChhHHHH
Q 038230 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID-PGLGFSKKAEHNLD 401 (480)
Q Consensus 323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD-PgiGf~k~~~~~~~ 401 (480)
+++++++++|++.+=|=..- .|.......+ ..=+.|+ ..+.+++++|.++|+- +++. ||.-.-...+.|.+
T Consensus 205 D~lLeI~k~yDVtLSLGDgl-RPG~i~Da~D---~aQi~EL-~~lgeL~~rA~e~gVQ---vMVEGPGHVPl~~I~~nv~ 276 (420)
T PF01964_consen 205 DRLLEIAKEYDVTLSLGDGL-RPGCIADATD---RAQIQEL-IILGELVKRAREAGVQ---VMVEGPGHVPLNQIEANVK 276 (420)
T ss_dssp HHHHHHHTTTT-EEEE--TT---SSGGGTT----HHHHHHH-HHHHHHHHHHHHTT-----EEEEE-SB--GGGHHHHHH
T ss_pred HHHHHHHHHhCeeEeccccc-CCCCcCCCCc---HHHHHHH-HHHHHHHHHHHHCCCe---EEeeCCCCCCHHHHHHHHH
Confidence 47899999999887764321 2433322111 1112333 3577899999999994 6655 66656677788898
Q ss_pred HHHhcccCCCcEEE-eeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEE
Q 038230 402 ILLGLAASHAPILI-GPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVR 455 (480)
Q Consensus 402 ~lr~l~~~g~Pil~-G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlR 455 (480)
+.+++ ..|.|..+ |. -+|.-.+.-|. ..++.-.++|...|||++=
T Consensus 277 lqK~l-c~~APfYvLGP-------LvTDiapGYDH-It~AIGgAiaa~~GAdfLC 322 (420)
T PF01964_consen 277 LQKRL-CHGAPFYVLGP-------LVTDIAPGYDH-ITSAIGGAIAAAAGADFLC 322 (420)
T ss_dssp HHHHH-TTT--EEEE---------BS-SS-TT-HH-HHHHHHHHHHHHHT-SEEE
T ss_pred HHHHh-cCCCCcccCCc-------cccccCCChhH-HHHHHHHHHHHHcCcceEe
Confidence 88885 34778743 32 12222211222 2333347889999999874
No 347
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=74.34 E-value=1.1e+02 Score=32.15 Aligned_cols=139 Identities=12% Similarity=0.198 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----------
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMAT----------KISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---------- 297 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~----------~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---------- 297 (480)
+.++.+.++|+++|=|=-.+-.-+.. ..+.++-.++.+.++..+.+..+ .++.|++-+.
T Consensus 174 ~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p-~d~~v~~HiC~Gn~~~~~~~ 252 (368)
T PRK06520 174 DAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKP-ADLTIGLHVCRGNFRSTWIS 252 (368)
T ss_pred HHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCC-CCcEEEEEeecCCCCCcccc
Confidence 34678889999999886432110000 01222224455566666555421 2566755444
Q ss_pred ---CHHHHHHHH-HcCCCEEe-cCCCCC-CCchHHHHHHhcCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230 298 ---YSKVASEAV-GKGAHIVN-DVSAGQ-LDPDMYKVVAGLKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELYS 369 (480)
Q Consensus 298 ---~~~v~~aaL-~~G~~iIN-dVsg~~-~d~~m~~l~~~~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~ 369 (480)
+..++..-+ +..++.+. +..... ..-+-+.+..+.+..|++ +..+ .| .++. .+.+.+
T Consensus 253 ~~~y~~i~~~L~~~~~vd~~~lE~~~~r~g~~e~L~~l~~~~k~v~lGvvd~~-~~-~vE~-------------~e~I~~ 317 (368)
T PRK06520 253 EGGYEPVAETLFGGVNVDAFFLEYDNERAGGFEPLRFIPPGHQQVVLGLITTK-NG-ELEN-------------ADDVKA 317 (368)
T ss_pred ccchhHHHHHHHhhcCCCeEEEEeccCCCCCcchHHHhhhcCCEEEeeEEeCC-CC-CCCC-------------HHHHHH
Confidence 235555434 45666543 111110 111444555443434443 2221 11 1111 145567
Q ss_pred HHHHHHHCCCCCCCEEEecCCCCc
Q 038230 370 KVRDAELSGIPAWRIIIDPGLGFS 393 (480)
Q Consensus 370 ~i~~a~~~Gi~~~~IilDPgiGf~ 393 (480)
+++++.++ +++++|++.|=-||.
T Consensus 318 rI~~a~~~-v~~~~l~lspdCGf~ 340 (368)
T PRK06520 318 RLAEAAKF-VPLEQLCLSPQCGFA 340 (368)
T ss_pred HHHHHHHh-CCHHHEeeCcccCCC
Confidence 78888776 567899999988876
No 348
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.30 E-value=52 Score=32.02 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg 318 (480)
++++.+++||++|- | |+.. + .+++..++. ++|+-=-+..|+.+.+|+++|+++|.=.-+
T Consensus 80 ~~~~a~~aGA~Fiv----s--P~~~-----~------~v~~~~~~~----~i~~iPG~~T~~E~~~A~~~Gad~vklFPa 138 (213)
T PRK06552 80 TARLAILAGAQFIV----S--PSFN-----R------ETAKICNLY----QIPYLPGCMTVTEIVTALEAGSEIVKLFPG 138 (213)
T ss_pred HHHHHHHcCCCEEE----C--CCCC-----H------HHHHHHHHc----CCCEECCcCCHHHHHHHHHcCCCEEEECCc
Confidence 67888899999997 2 5432 2 234444554 889999999999999999999999984222
Q ss_pred CCCCchHHHHHHhcCCCEEEEcCCCCC
Q 038230 319 GQLDPDMYKVVAGLKVPYVAMHMRGDP 345 (480)
Q Consensus 319 ~~~d~~m~~l~~~~~~~vVlmh~~g~p 345 (480)
...-+++++.++..--.+=+|...|+.
T Consensus 139 ~~~G~~~ik~l~~~~p~ip~~atGGI~ 165 (213)
T PRK06552 139 STLGPSFIKAIKGPLPQVNVMVTGGVN 165 (213)
T ss_pred ccCCHHHHHHHhhhCCCCEEEEECCCC
Confidence 222255555555432223355666754
No 349
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=74.25 E-value=55 Score=35.18 Aligned_cols=142 Identities=17% Similarity=0.237 Sum_probs=73.6
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEA 305 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aa 305 (480)
.++.+++++++.++.+++.|+.-|-+-++...- |.+ .....++.. +++.+.+.. +. -+.+-+.+|.
T Consensus 173 ~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d-~~~~~~l~~---Ll~~l~~~~---~~~~ir~~~~~P~----- 240 (439)
T PRK14328 173 ERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKD-LEEKIDFAD---LLRRVNEID---GLERIRFMTSHPK----- 240 (439)
T ss_pred cccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcC-CCCCcCHHH---HHHHHHhcC---CCcEEEEecCChh-----
Confidence 366789999999999999999998776654321 111 111122333 344444321 22 2444444441
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
..+++++++.++++ +..+-+.-+ |.+. .|.+. +. .+.+.+.++.+.++ +
T Consensus 241 --------------~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~--~~--------~~~~~~~i~~lr~~-~ 295 (439)
T PRK14328 241 --------------DLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRH--YT--------REYYLELVEKIKSN-I 295 (439)
T ss_pred --------------hcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCC--CC--------HHHHHHHHHHHHHh-C
Confidence 12466777777765 555444332 2222 22221 11 13344566666665 2
Q ss_pred CCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 380 PAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 380 ~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
+.-.|-.|=-+|| +.+.++..++++-+
T Consensus 296 ~~i~i~~d~IvG~PgET~ed~~~tl~~i 323 (439)
T PRK14328 296 PDVAITTDIIVGFPGETEEDFEETLDLV 323 (439)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 2113566777887 55655544444443
No 350
>PRK09234 fbiC FO synthase; Reviewed
Probab=74.03 E-value=27 Score=40.90 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
.++.|+++++|++..+.||.-+-+=+ ...|. .+.+++..+++.|++.. .-+.|..|.|
T Consensus 556 ~Ls~eeI~~~a~ea~~~G~tev~i~g-G~~p~-------~~~~~y~~lir~IK~~~----p~i~i~afsp 613 (843)
T PRK09234 556 TLSLDEVADRAWEAWVAGATEVCMQG-GIHPE-------LPGTGYADLVRAVKARV----PSMHVHAFSP 613 (843)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEec-CCCCC-------cCHHHHHHHHHHHHHhC----CCeeEEecCh
Confidence 47999999999999999999887742 12232 33667778888888752 1266666655
No 351
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.97 E-value=13 Score=37.77 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHc---CCCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 233 VEAAVSQVRLMISE---GADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 233 ~e~a~~~A~~~v~~---GAdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
.++.++.++++.+. |||.||+|..+.. ++... ...+.+.+..+++.+++. .++||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~--~~~~~~~~~~i~~~v~~~---~~iPv~v 162 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPP--PAYDFDATLEYLTAVKAA---YSIPVGV 162 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCccc--ccCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 57888888888775 7999999974322 11111 112345777788888876 3566544
No 352
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=73.92 E-value=52 Score=31.42 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc--ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230 369 SKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL--AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAG 446 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l--~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a 446 (480)
..++.|.+.|.+.=+++++.|.-........++-+.++ ...|.|+.+=+ +.. .-+...-..++-+|
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~----------e~~--~l~~~~i~~a~ria 140 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVIL----------ETG--LLTDEEIIKACEIA 140 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEE----------ecC--CCCHHHHHHHHHHH
Confidence 44677888999988888888754455555555556655 12377876522 211 11112223346789
Q ss_pred HHcCCcEEEcC
Q 038230 447 VLGGANIVRVH 457 (480)
Q Consensus 447 ~~~Ga~IlRvH 457 (480)
++.|||++.|-
T Consensus 141 ~e~GaD~IKTs 151 (203)
T cd00959 141 IEAGADFIKTS 151 (203)
T ss_pred HHhCCCEEEcC
Confidence 99999999994
No 353
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=73.78 E-value=25 Score=34.55 Aligned_cols=84 Identities=11% Similarity=0.146 Sum_probs=54.4
Q ss_pred chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC-C----C-CccCh
Q 038230 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG-L----G-FSKKA 396 (480)
Q Consensus 323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg-i----G-f~k~~ 396 (480)
++.++++++.|+++|.++....|... ..++......+.+.+..+.|.+.|+ +|.+-|. . + +..+.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~~~~------~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE~~n~~~~~~~~~~~~ 158 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTPAGF------SSEQIHATLVENLRYAANMLMKEDI---LLLIEPINHFDIPGFHLTGT 158 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHcCC---EEEEEeCCCcCCCCCccCCH
Confidence 46788899999999887764333211 1123344455677788888889999 4999873 1 2 35677
Q ss_pred hHHHHHHHhcccCCCcEEE
Q 038230 397 EHNLDILLGLAASHAPILI 415 (480)
Q Consensus 397 ~~~~~~lr~l~~~g~Pil~ 415 (480)
.+.+++++.+..+++.+++
T Consensus 159 ~~~~~ll~~v~~~~v~l~~ 177 (258)
T PRK09997 159 RQALKLIDDVGCCNLKIQY 177 (258)
T ss_pred HHHHHHHHHhCCCCEEEEe
Confidence 7778888876333444444
No 354
>PRK07945 hypothetical protein; Provisional
Probab=73.62 E-value=6.8 Score=40.71 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCE-EecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 038230 299 SKVASEAVGKGAHI-VNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAE 375 (480)
Q Consensus 299 ~~v~~aaL~~G~~i-INdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~ 375 (480)
.++++++.+.|..+ ||. ++.... +.+++.++++|+++++-.+-..|... .++...++.+.
T Consensus 248 ~~i~~a~~e~g~~lEINt-~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~~v----------------~~~~~~~~~a~ 310 (335)
T PRK07945 248 EAVFAACREHGTAVEINS-RPERRDPPTRLLRLALDAGCLFSIDTDAHAPGQL----------------DWLGYGCERAE 310 (335)
T ss_pred HHHHHHHHHhCCEEEEeC-CCCCCCChHHHHHHHHHcCCeEEecCCCCChhhc----------------chHHHHHHHHH
Confidence 45555566666555 553 232222 57999999999998764332223211 34556888899
Q ss_pred HCCCCCCCEE
Q 038230 376 LSGIPAWRII 385 (480)
Q Consensus 376 ~~Gi~~~~Ii 385 (480)
++|+++++|+
T Consensus 311 ~~g~~~~~i~ 320 (335)
T PRK07945 311 EAGVPADRIV 320 (335)
T ss_pred HcCCCHHHcc
Confidence 9999988765
No 355
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=73.58 E-value=1.2e+02 Score=31.54 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHH----cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe----CCCHHHHHHH
Q 038230 234 EAAVSQVRLMIS----EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD----TFYSKVASEA 305 (480)
Q Consensus 234 e~a~~~A~~~v~----~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID----T~~~~v~~aa 305 (480)
+.+++..+...+ .+.+.|-+||.. |.. . ..++++++...|+.... .+..+++. +.+++.++..
T Consensus 34 ~~L~~Ei~~~~~~~~~~~v~~iyfGGGT--Ps~--l-~~~~l~~ll~~i~~~~~----~~~eitiE~nP~~~~~e~l~~l 104 (350)
T PRK08446 34 QALCLDLKFELEQFTDEKIESVFIGGGT--PST--V-SAKFYEPIFEIISPYLS----KDCEITTEANPNSATKAWLKGM 104 (350)
T ss_pred HHHHHHHHHHHhhccCCceeEEEECCCc--ccc--C-CHHHHHHHHHHHHHhcC----CCceEEEEeCCCCCCHHHHHHH
Confidence 444444443332 267889998732 321 2 24667776665544411 24556664 4445555555
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii 385 (480)
.++|+.-|. +.-...+++.++.+.+ ..+ .+...+.++.+.++|++ +|-
T Consensus 105 ~~~GvnRiS-iGvQS~~~~~L~~lgR-------------~~~----------------~~~~~~ai~~lr~~g~~--~v~ 152 (350)
T PRK08446 105 KNLGVNRIS-FGVQSFNEDKLKFLGR-------------IHS----------------QKQIIKAIENAKKAGFE--NIS 152 (350)
T ss_pred HHcCCCEEE-EecccCCHHHHHHcCC-------------CCC----------------HHHHHHHHHHHHHcCCC--EEE
Confidence 555655543 3222223333322111 110 12344667777888886 677
Q ss_pred EecCCCCc-cChhHHHHHHHh
Q 038230 386 IDPGLGFS-KKAEHNLDILLG 405 (480)
Q Consensus 386 lDPgiGf~-k~~~~~~~~lr~ 405 (480)
+|=.+|+. .+.++-.+.++.
T Consensus 153 iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 153 IDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred EEeecCCCCCCHHHHHHHHHH
Confidence 88888863 344433334443
No 356
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=73.57 E-value=1.2e+02 Score=31.56 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=64.8
Q ss_pred CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCHHHHHHHHHcCCCEEecCCCCCCCc
Q 038230 248 ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYSKVASEAVGKGAHIVNDVSAGQLDP 323 (480)
Q Consensus 248 AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~~v~~aaL~~G~~iINdVsg~~~d~ 323 (480)
.+.|-+||.. |.. . ..+++.++...|+..-.. ..+..+++ |+.+.+.++...++|+..|. +.-...++
T Consensus 52 v~~i~~GGGt--Ps~--l-~~~~l~~ll~~i~~~~~~--~~~~eitie~np~~lt~e~l~~l~~~Gv~ris-iGvqS~~~ 123 (360)
T TIGR00539 52 LESIFIGGGT--PNT--L-SVEAFERLFESIYQHASL--SDDCEITTEANPELITAEWCKGLKGAGINRLS-LGVQSFRD 123 (360)
T ss_pred ccEEEeCCCc--hhc--C-CHHHHHHHHHHHHHhCCC--CCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEE-EecccCCh
Confidence 6788998732 321 1 246677666555432221 13567888 77888888777777876553 33333345
Q ss_pred hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHH
Q 038230 324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDI 402 (480)
Q Consensus 324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~ 402 (480)
++++.+.+ +.+. +...+.++.+.++|++ ++-+|=.+|. +.+.++-.+.
T Consensus 124 ~~l~~lgR-------------~~~~----------------~~~~~ai~~l~~~G~~--~v~~dli~GlPgqt~~~~~~~ 172 (360)
T TIGR00539 124 DKLLFLGR-------------QHSA----------------KNIAPAIETALKSGIE--NISLDLMYGLPLQTLNSLKEE 172 (360)
T ss_pred HHHHHhCC-------------CCCH----------------HHHHHHHHHHHHcCCC--eEEEeccCCCCCCCHHHHHHH
Confidence 55543211 1110 2234566677777875 5677777775 4444433333
Q ss_pred HHh
Q 038230 403 LLG 405 (480)
Q Consensus 403 lr~ 405 (480)
++.
T Consensus 173 l~~ 175 (360)
T TIGR00539 173 LKL 175 (360)
T ss_pred HHH
Confidence 443
No 357
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=73.56 E-value=22 Score=39.13 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---C--CHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---F--YSKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~--~~~v~~a 304 (480)
..+.+..++.|+++.+.|||.|-|.=. +....+ ++..++ ++.|++... .++||++=+ + -.....+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDt-----aGll~P-~~~~~L---V~~Lk~~~~-~~ipI~~H~Hnt~GlA~An~la 220 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDM-----AALLKP-QPAYDI---VKGIKEACG-EDTRINLHCHSTTGVTLVSLMK 220 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCC-----ccCCCH-HHHHHH---HHHHHHhCC-CCCeEEEEeCCCCCcHHHHHHH
Confidence 358999999999999999999988621 111222 445544 556665521 168999954 3 3455678
Q ss_pred HHHcCCCEEec
Q 038230 305 AVGKGAHIVND 315 (480)
Q Consensus 305 aL~~G~~iINd 315 (480)
|+++|+++|..
T Consensus 221 AieAGad~vDt 231 (499)
T PRK12330 221 AIEAGVDVVDT 231 (499)
T ss_pred HHHcCCCEEEe
Confidence 89999999864
No 358
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=73.53 E-value=16 Score=42.12 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred EEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 213 imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
.+|+ =++++-|.+|| .+.++.++.|+.+.+.|+|+|+|-+..+.+...+ .. .+ ....+..+.+++. .++||
T Consensus 620 ~v~~-ri~~~~~~~~g--~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~-~~-~~-~~~~~~~~~ik~~---~~~pv 690 (765)
T PRK08255 620 PMSV-RISAHDWVEGG--NTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKP-VY-GR-MYQTPFADRIRNE---AGIAT 690 (765)
T ss_pred eeEE-EEccccccCCC--CCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCC-Cc-Cc-cccHHHHHHHHHH---cCCEE
Confidence 4553 23455566665 5889999999999999999999954333221110 00 00 0112344556654 36665
Q ss_pred EE--eCCCHHHHHHHHHcC-CCEEecCCCCCCCch-HHHHHHhcCCC
Q 038230 293 SV--DTFYSKVASEAVGKG-AHIVNDVSAGQLDPD-MYKVVAGLKVP 335 (480)
Q Consensus 293 SI--DT~~~~v~~aaL~~G-~~iINdVsg~~~d~~-m~~l~~~~~~~ 335 (480)
.. +-+.++.++.+|+.| +|+|-=-.+.-.||+ ....+++.++.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 54 556899999999985 888864444445664 56667777765
No 359
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=73.47 E-value=24 Score=35.13 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
.++++.+.||+.++||... - +....+..+++...+ ..+++|||..
T Consensus 88 d~~~l~~~G~~~vvigs~~-~---------~~~~~~~~~~~~~~~----~~i~vsiD~k 132 (258)
T PRK01033 88 QAKKIFSLGVEKVSINTAA-L---------EDPDLITEAAERFGS----QSVVVSIDVK 132 (258)
T ss_pred HHHHHHHCCCCEEEEChHH-h---------cCHHHHHHHHHHhCC----CcEEEEEEEe
Confidence 4666678899999999532 1 112233333443322 2588999965
No 360
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.47 E-value=66 Score=32.83 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC-----c----hHHHHHHhcC--CCEEEE
Q 038230 275 IPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD-----P----DMYKVVAGLK--VPYVAM 339 (480)
Q Consensus 275 ~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d-----~----~m~~l~~~~~--~~vVlm 339 (480)
..+++..++. .-..-+.+.++.+.+++.+++ ++++|-.++-.... + -+..++++++ +||++-
T Consensus 7 ~~lL~~A~~~---~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lH 83 (285)
T PRK07709 7 KEMLNKALEG---KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 83 (285)
T ss_pred HHHHHHHHHC---CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 3445555554 135688999999998888875 88888878654221 1 1333455666 677764
Q ss_pred cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 340 HMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 340 h~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
-+.|.. .+.+.+|.++|++ -+-+| |-.-+.++|++.-|++ +..|+++
T Consensus 84 LDHg~~----------------------~e~i~~ai~~Gft--SVM~D---gS~lp~eeNi~~Trevv~~Ah~~gv~V 134 (285)
T PRK07709 84 LDHGSS----------------------FEKCKEAIDAGFT--SVMID---ASHHPFEENVETTKKVVEYAHARNVSV 134 (285)
T ss_pred CCCCCC----------------------HHHHHHHHHcCCC--EEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 334321 1444577888997 89999 4555678888887776 3456665
No 361
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=73.34 E-value=14 Score=38.01 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcC-CCEEEeCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe----EEEeCCCHHHHHHHH
Q 038230 233 VEAAVSQVRLMISEG-ADMIDIGAQSTR-PMATKISAEKELERLIPVLEAVLTMPEMEGKL----VSVDTFYSKVASEAV 306 (480)
Q Consensus 233 ~e~a~~~A~~~v~~G-AdiIDIG~eStr-P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p----ISIDT~~~~v~~aaL 306 (480)
.++-.+.|+++.+.| ||.|++|..+.. |+.... ..+.+.+..+++.+++. .++| |+-|....+.+++|.
T Consensus 104 ~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~--g~d~~~~~~i~~~v~~~---~~~Pv~vKlsp~~~~~~~a~~~~ 178 (310)
T PRK02506 104 PEETHTILKKIQASDFNGLVELNLSCPNVPGKPQI--AYDFETTEQILEEVFTY---FTKPLGVKLPPYFDIVHFDQAAA 178 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCCCCcccc--ccCHHHHHHHHHHHHHh---cCCccEEecCCCCCHHHHHHHHH
Confidence 356667777777778 999999975421 221111 12233456667777664 2444 445664455554443
Q ss_pred ---HcCCCEEecCC
Q 038230 307 ---GKGAHIVNDVS 317 (480)
Q Consensus 307 ---~~G~~iINdVs 317 (480)
+.|++.||-++
T Consensus 179 ~~~~~g~~~i~~~n 192 (310)
T PRK02506 179 IFNKFPLAFVNCIN 192 (310)
T ss_pred HhCcCceEEEEEec
Confidence 33666665554
No 362
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=73.34 E-value=1.3e+02 Score=31.72 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCC--CCCC----------CCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTR--PMAT----------KISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStr--P~a~----------~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|++.|++-|+++.+.++. ++=++.+--| +|.. .-.-++=+.....++..|.+. ++|
T Consensus 63 hd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~i~~~----GlP 138 (348)
T PRK12756 63 HDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQINEL----GLP 138 (348)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHHHHHc----CCc
Confidence 4789999999999999987 6677776533 2200 112234355555666666654 899
Q ss_pred EEEeCCCHHHHHH---HH---HcCCC-------------------EEecCCCCCCCchHHHHHHh----c-------CCC
Q 038230 292 VSVDTFYSKVASE---AV---GKGAH-------------------IVNDVSAGQLDPDMYKVVAG----L-------KVP 335 (480)
Q Consensus 292 ISIDT~~~~v~~a---aL---~~G~~-------------------iINdVsg~~~d~~m~~l~~~----~-------~~~ 335 (480)
+.-+-.+|.+.+. -+ ..||. +-|..+|.- ..++..+.. + +-.
T Consensus 139 ~atE~ld~~~~qY~~DliSwgaIGARt~esq~hre~ASgls~PVgfKN~t~g~i--~~aidAi~aa~~~H~Fl~~~~~G~ 216 (348)
T PRK12756 139 TATEFLDMVTGQYIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNT--RIAIDAIRAARASHMFLSPDKDGQ 216 (348)
T ss_pred eeehhcccccHHHHHHHHhhhhhccccccCHHHHHHHhcCCCceEecCCCCCCH--HHHHHHHHHHhCCCeeEeeCCCCc
Confidence 8876666655544 22 11333 223333211 111111111 0 111
Q ss_pred EEEEcCCCCCCcc-----ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc---
Q 038230 336 YVAMHMRGDPSTM-----QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL--- 406 (480)
Q Consensus 336 vVlmh~~g~p~~~-----~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l--- 406 (480)
..++++.|.|.+- ...+||++++ ..+..+.+.++|++ .+|++|--.|= +|+...-..+++.+
T Consensus 217 ~aiv~T~GN~~~HvILRGg~~PNY~~~~--------v~~a~~~l~~~~l~-~~imVDcSH~NS~K~~~~Q~~V~~~v~~q 287 (348)
T PRK12756 217 MTIYQTSGNPYGHIIMRGGKKPNYHAED--------IAAACDTLREFDLP-EHLVVDFSHGNCQKQHRRQLDVAEDICQQ 287 (348)
T ss_pred EEEEEcCCCCCeEEEeeCCCCCCCCHHH--------HHHHHHHHHHCCCC-CcEEEECCCcccCCCHHHHHHHHHHHHHH
Confidence 2334666777532 1246666543 45667778889998 68999998884 67765556666555
Q ss_pred ccCCCcEEEeecccccccc
Q 038230 407 AASHAPILIGPSRKRFLGE 425 (480)
Q Consensus 407 ~~~g~Pil~G~SrKsfi~~ 425 (480)
...|-.-++|+==.|||..
T Consensus 288 i~~g~~~I~GvMiES~L~~ 306 (348)
T PRK12756 288 IRNGSTAIAGIMAESFLRE 306 (348)
T ss_pred HHcCCCeEEEEEEeecccc
Confidence 1234444778877788653
No 363
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=73.30 E-value=1.2e+02 Score=31.57 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=70.3
Q ss_pred CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----CHHHH
Q 038230 227 GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----YSKVA 302 (480)
Q Consensus 227 gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~~~v~ 302 (480)
....++.+++.+.+.++.+.|...|.+.| ..|... .+ +..+++.+++. ++.++|-|. +.+.+
T Consensus 42 ~~~~~~~e~~~~ii~~~~~~g~~~v~~~G--GEPll~-----~~---~~~il~~~~~~----g~~~~i~TNG~ll~~~~~ 107 (378)
T PRK05301 42 HGAELSTEEWIRVLREARALGALQLHFSG--GEPLLR-----KD---LEELVAHAREL----GLYTNLITSGVGLTEARL 107 (378)
T ss_pred ccCCCCHHHHHHHHHHHHHcCCcEEEEEC--CccCCc-----hh---HHHHHHHHHHc----CCcEEEECCCccCCHHHH
Confidence 34457788888888888888887777743 223211 11 33445555543 455666654 34555
Q ss_pred HHHHHcCCCE-EecCCCCC-------------CC--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHH
Q 038230 303 SEAVGKGAHI-VNDVSAGQ-------------LD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASE 366 (480)
Q Consensus 303 ~aaL~~G~~i-INdVsg~~-------------~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~ 366 (480)
+.-.+.|.+. --|+.|.+ .+ -+.++.++++|..+.+...- ...+ ...
T Consensus 108 ~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~~N----------------~~~ 170 (378)
T PRK05301 108 AALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HRHN----------------IDQ 170 (378)
T ss_pred HHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ecCC----------------HHH
Confidence 5555556553 23444421 00 12345667788776653321 0111 134
Q ss_pred HHHHHHHHHHCCCCCCCEEEec
Q 038230 367 LYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 367 l~~~i~~a~~~Gi~~~~IilDP 388 (480)
+.+.++.+.+.|++ .+.+-|
T Consensus 171 i~~~~~~~~~lgv~--~i~~~~ 190 (378)
T PRK05301 171 IPRIIELAVELGAD--RLELAN 190 (378)
T ss_pred HHHHHHHHHHcCCC--EEEEec
Confidence 55677788889997 555544
No 364
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=73.17 E-value=17 Score=39.96 Aligned_cols=70 Identities=23% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCEEEeCCC--CCCCC---C-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcC
Q 038230 238 SQVRLMISEGADMIDIGAQ--STRPM---A-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKG 309 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~e--StrP~---a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G 309 (480)
+.|+.++++|||.|.+|.. |+.-. . -.++ .+.-+..+.+..++. ++|+--|- .++.-+.+|+.+|
T Consensus 294 ~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p---~~~ai~~~~~~~~~~----~v~vIadGGi~~~~di~kAla~G 366 (495)
T PTZ00314 294 DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRP---QASAVYHVARYARER----GVPCIADGGIKNSGDICKALALG 366 (495)
T ss_pred HHHHHHHHcCCCEEEECCcCCcccccchhccCCCC---hHHHHHHHHHHHhhc----CCeEEecCCCCCHHHHHHHHHcC
Confidence 4677888999999998743 21111 0 0111 122233333333433 78887754 7888899999999
Q ss_pred CCEEe
Q 038230 310 AHIVN 314 (480)
Q Consensus 310 ~~iIN 314 (480)
|+.+-
T Consensus 367 A~~Vm 371 (495)
T PTZ00314 367 ADCVM 371 (495)
T ss_pred CCEEE
Confidence 98775
No 365
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=73.16 E-value=23 Score=34.50 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=56.1
Q ss_pred hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCC-----C-CccChh
Q 038230 324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGL-----G-FSKKAE 397 (480)
Q Consensus 324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgi-----G-f~k~~~ 397 (480)
++++++++.|+++|.++....|... .+++..+...+.+++..+.|.+.|+. |.+-|.. + +..+.+
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~~------~~~~~~~~~~~~l~~l~~~A~~~gi~---l~lE~~~~~~~~~~~l~t~~ 158 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAGV------SPEEARATLVENLRYAADALDRIGLT---LLIEPINSFDMPGFFLTTTE 158 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCC------CHHHHHHHHHHHHHHHHHHHHhcCCE---EEEEECCcccCCCChhcCHH
Confidence 5788999999999987754333221 12344455567788888999999995 9998742 2 245677
Q ss_pred HHHHHHHhcccCCCcEEEee
Q 038230 398 HNLDILLGLAASHAPILIGP 417 (480)
Q Consensus 398 ~~~~~lr~l~~~g~Pil~G~ 417 (480)
+.+++++.+..+.+-+++=+
T Consensus 159 ~~~~li~~v~~~~~~i~~D~ 178 (254)
T TIGR03234 159 QALAVIDDVGRENLKLQYDL 178 (254)
T ss_pred HHHHHHHHhCCCCEeEeeeh
Confidence 77888887643444444433
No 366
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.11 E-value=42 Score=32.03 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=69.1
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg 318 (480)
.|.-..-.|||+|-+|...|+. .+|-++-+..++.++++.- .-...+-+-+ +.+.-|++|+.
T Consensus 72 AalGaav~GaDYiKVGLYg~kn------~~eA~e~m~~vvrAVkd~d---~~k~VVAaGY---------aDa~Rvgsv~P 133 (235)
T COG1891 72 AALGAAVAGADYIKVGLYGTKN------EEEALEVMKNVVRAVKDFD---PSKKVVAAGY---------ADAHRVGSVSP 133 (235)
T ss_pred HHHHhHhhCCceEEEeeccccc------HHHHHHHHHHHHHHHhccC---CCceEEeccc---------cchhhccCcCc
Confidence 3445557899999999876663 5677888888998888752 1112221111 23567888875
Q ss_pred CCCCchHHHHHHhcCCCEEEEcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 319 GQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 319 ~~~d~~m~~l~~~~~~~vVlmh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
.. +-+++++.||.++...+- -+.++. +++.+ .+.+++-++.|.++|++
T Consensus 134 l~----~P~vaa~ag~DvaMvDTaiKDGksl-----Fdfm~-----~e~l~eFvd~Ah~hGL~ 182 (235)
T COG1891 134 LL----LPEVAAEAGADVAMVDTAIKDGKSL-----FDFMD-----EEELEEFVDLAHEHGLE 182 (235)
T ss_pred cc----cHHHHHhcCCCEEEEecccccchhH-----Hhhhc-----HHHHHHHHHHHHHcchH
Confidence 43 456889999999977651 011111 11111 24566778888999986
No 367
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=73.05 E-value=16 Score=36.49 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEe
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iIN 314 (480)
++.+..+.|||+|=+.+.. .+ .++++ .+++..++. ++-+-+|..+.+.++.|++.|+++|-
T Consensus 125 qi~~a~~~GAD~VlLi~~~-l~-------~~~l~---~li~~a~~l----Gl~~lvevh~~~E~~~A~~~gadiIg 185 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-LD-------DEQLK---ELLDYAHSL----GLDVLVEVHDEEELERALKLGAPLIG 185 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-CC-------HHHHH---HHHHHHHHc----CCeEEEEeCCHHHHHHHHHcCCCEEE
Confidence 5777889999999999743 21 13444 445555654 78899999999999999999999885
No 368
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=73.01 E-value=15 Score=40.01 Aligned_cols=70 Identities=27% Similarity=0.349 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCEEEeCCCCC-----CCCCC-CCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230 238 SQVRLMISEGADMIDIGAQST-----RPMAT-KISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG 309 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eSt-----rP~a~-~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G 309 (480)
+.|+.+++.|||+|++|..+. |-... .++ .+.-+..+.+..++ .++||--| -.++.-+..||..|
T Consensus 281 e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p---~~~~~~~~~~~~~~----~~~~viadGGi~~~~di~kAla~G 353 (486)
T PRK05567 281 EAARALIEAGADAVKVGIGPGSICTTRIVAGVGVP---QITAIADAAEAAKK----YGIPVIADGGIRYSGDIAKALAAG 353 (486)
T ss_pred HHHHHHHHcCCCEEEECCCCCccccceeecCCCcC---HHHHHHHHHHHhcc----CCCeEEEcCCCCCHHHHHHHHHhC
Confidence 356777889999999986321 11000 111 12233333333332 36888885 47899999999999
Q ss_pred CCEEe
Q 038230 310 AHIVN 314 (480)
Q Consensus 310 ~~iIN 314 (480)
|+.+-
T Consensus 354 A~~v~ 358 (486)
T PRK05567 354 ASAVM 358 (486)
T ss_pred CCEEE
Confidence 98775
No 369
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=72.92 E-value=22 Score=38.83 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC---C--CHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT---F--YSKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT---~--~~~v~~a 304 (480)
..+.+..++.|+++.+.|||.|=|.= |. ....+ ++... +++.+++. .++||.+=+ + -.....+
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~D--t~---G~l~P-~~v~~---Lv~~lk~~---~~vpI~~H~Hnt~GlA~AN~la 216 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKD--MA---GLLTP-KRAYE---LVKALKKK---FGVPVEVHSHCTTGLASLAYLA 216 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--cc---CCcCH-HHHHH---HHHHHHHh---cCCceEEEecCCCCcHHHHHHH
Confidence 45789999999999999999997751 11 11122 44444 45666665 368999844 3 3455678
Q ss_pred HHHcCCCEEecC
Q 038230 305 AVGKGAHIVNDV 316 (480)
Q Consensus 305 aL~~G~~iINdV 316 (480)
|+++|+++|..-
T Consensus 217 AieaGad~vD~s 228 (467)
T PRK14041 217 AVEAGADMFDTA 228 (467)
T ss_pred HHHhCCCEEEee
Confidence 899999998743
No 370
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.90 E-value=18 Score=38.03 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---------------
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--------------- 294 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--------------- 294 (480)
.++++.++.++.+.+.|+|+|++-..+. .|....- . .++.+.+++. .++||.+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~----~----~~~~~~~k~~---~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGS----E----LNLAGWTKKL---TGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCcc----c----hhHHHHHHHH---cCCCEEEECCcccccccccccc
Confidence 5788999999999999999999954321 2211110 1 1223334443 2555544
Q ss_pred -----eCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHh
Q 038230 295 -----DTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAG 331 (480)
Q Consensus 295 -----DT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~ 331 (480)
|..+++.++++|+.| +|+|-=-.+.-.||.+..-+++
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 343 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVRE 343 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHc
Confidence 236899999999985 8988644444457877776655
No 371
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=72.80 E-value=18 Score=38.78 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=50.4
Q ss_pred CeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCC---------C-----chHHHHHHhcCCC---EEEEcCCCCCCcc
Q 038230 290 KLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQL---------D-----PDMYKVVAGLKVP---YVAMHMRGDPSTM 348 (480)
Q Consensus 290 ~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~---------d-----~~m~~l~~~~~~~---vVlmh~~g~p~~~ 348 (480)
-..||.|.+|-|+++||+. |..++---+..+. . .-+..+|++.|++ +++.-+.+-|..-
T Consensus 18 gI~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~~~iiLGGDHLGP~~w 97 (424)
T PF08013_consen 18 GIYSVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFPRDRIILGGDHLGPNPW 97 (424)
T ss_dssp -EEEE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--GGGEEEEEEEESSCCC
T ss_pred ceEEecCCCHHHHHHHHHHHHhcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCchhhEEecCCCCCcccc
Confidence 3599999999999999996 4444322222111 1 2367788888875 4665443335333
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC
Q 038230 349 QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392 (480)
Q Consensus 349 ~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf 392 (480)
+..+ .++-++..++.+....++|+. +|-|||-++-
T Consensus 98 ~~lp-------aeeAM~~A~~li~ayv~AGF~--KIHLD~Sm~c 132 (424)
T PF08013_consen 98 QHLP-------AEEAMAKAKELIRAYVEAGFT--KIHLDCSMDC 132 (424)
T ss_dssp TTSB-------HHHHHHHHHHHHHHHHCTT----EEEE---C--
T ss_pred cCCC-------HHHHHHHHHHHHHHHHHcCCc--eEeecCCCCC
Confidence 3221 345567778899999999998 9999997664
No 372
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=72.78 E-value=1.1e+02 Score=30.85 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE------------EeCC
Q 038230 231 QSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS------------VDTF 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS------------IDT~ 297 (480)
.+.+++++.+.++++ .||+-+=|=+. + .+.+.|+.+.+. ++|++ ...|
T Consensus 90 ~~~~~av~~a~r~~~~aGa~aVkiEdg------------~---~~~~~I~al~~a----gIpV~gHiGL~pq~~~~~gg~ 150 (264)
T PRK00311 90 ASPEQALRNAGRLMKEAGAHAVKLEGG------------E---EVAETIKRLVER----GIPVMGHLGLTPQSVNVLGGY 150 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc------------H---HHHHHHHHHHHC----CCCEeeeecccceeecccCCe
Confidence 678999999988888 99999988431 1 344566777765 77774 1112
Q ss_pred -----CH----HHHHHHH---HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230 298 -----YS----KVASEAV---GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 298 -----~~----~v~~aaL---~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm 339 (480)
.. +.++.|. ++|+++|- +-+-. .+.+..+.++..+|+|-+
T Consensus 151 ~i~grt~~~a~~~i~ra~a~~eAGA~~i~-lE~v~-~~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 151 KVQGRDEEAAEKLLEDAKALEEAGAFALV-LECVP-AELAKEITEALSIPTIGI 202 (264)
T ss_pred eeecCCHHHHHHHHHHHHHHHHCCCCEEE-EcCCC-HHHHHHHHHhCCCCEEEe
Confidence 22 3333333 25999987 44433 355666667778888754
No 373
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=72.71 E-value=61 Score=33.23 Aligned_cols=105 Identities=12% Similarity=0.185 Sum_probs=60.6
Q ss_pred HHHHHHcCCcCCCCeEEEeCC-----CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccc
Q 038230 277 VLEAVLTMPEMEGKLVSVDTF-----YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNE 351 (480)
Q Consensus 277 vi~~l~~~~~~~~~pISIDT~-----~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~ 351 (480)
-|+.+++. ++.|+.++-. ..+.++.++++|+++|- ++++. ..++++.+++.|+.++..-. .
T Consensus 53 ~i~~~~~~---t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~-~~~g~-p~~~i~~lk~~g~~v~~~v~--s------- 118 (307)
T TIGR03151 53 EIRKVKEL---TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVT-TGAGN-PGKYIPRLKENGVKVIPVVA--S------- 118 (307)
T ss_pred HHHHHHHh---cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEE-EcCCC-cHHHHHHHHHcCCEEEEEcC--C-------
Confidence 34444543 3556665532 24666778889999885 34432 34588888888876653211 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC--CCC-ccChhHHHHHHHhc-ccCCCcEEE
Q 038230 352 ENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG--LGF-SKKAEHNLDILLGL-AASHAPILI 415 (480)
Q Consensus 352 ~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg--iGf-~k~~~~~~~~lr~l-~~~g~Pil~ 415 (480)
.+...++.++|++ -|++..- =|. +. ...+.+++++ +..++|++.
T Consensus 119 ----------------~~~a~~a~~~GaD--~Ivv~g~eagGh~g~--~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 119 ----------------VALAKRMEKAGAD--AVIAEGMESGGHIGE--LTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred ----------------HHHHHHHHHcCCC--EEEEECcccCCCCCC--CcHHHHHHHHHHHhCCCEEE
Confidence 1223566778986 5676541 022 21 1247777777 345788865
No 374
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=72.64 E-value=19 Score=37.26 Aligned_cols=71 Identities=25% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCEEEeCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcCC
Q 038230 238 SQVRLMISEGADMIDIGAQS-----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKGA 310 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eS-----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G~ 310 (480)
+.|+++.+.|||+|.+|+.+ |+.- ..+.. -.+.-+..+.+...+. ++||-- .-.++.-+.+||..||
T Consensus 147 ~~A~~l~~aGaD~I~vg~g~G~~~~t~~~-~g~g~-p~~~~i~~v~~~~~~~----~vpVIA~GGI~~~~di~kAla~GA 220 (325)
T cd00381 147 EAARDLIDAGADGVKVGIGPGSICTTRIV-TGVGV-PQATAVADVAAAARDY----GVPVIADGGIRTSGDIVKALAAGA 220 (325)
T ss_pred HHHHHHHhcCCCEEEECCCCCcCccccee-CCCCC-CHHHHHHHHHHHHhhc----CCcEEecCCCCCHHHHHHHHHcCC
Confidence 45677889999999997432 1110 00000 1233333344433332 677776 5567888888888888
Q ss_pred CEEe
Q 038230 311 HIVN 314 (480)
Q Consensus 311 ~iIN 314 (480)
+.+-
T Consensus 221 ~~Vm 224 (325)
T cd00381 221 DAVM 224 (325)
T ss_pred CEEE
Confidence 8664
No 375
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=72.64 E-value=29 Score=37.19 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=62.2
Q ss_pred eEEEeCCCHHHHHHHHHc----CCCEEecCCCC--------CC-C-----chHHHHHHhcCCC---EEEEcCCCCCCccc
Q 038230 291 LVSVDTFYSKVASEAVGK----GAHIVNDVSAG--------QL-D-----PDMYKVVAGLKVP---YVAMHMRGDPSTMQ 349 (480)
Q Consensus 291 pISIDT~~~~v~~aaL~~----G~~iINdVsg~--------~~-d-----~~m~~l~~~~~~~---vVlmh~~g~p~~~~ 349 (480)
.-||.|.+|-|+++|++. |..++---|.. +. . .-+..+|.+.|.+ +++.-+.+-|..=|
T Consensus 16 i~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq 95 (421)
T PRK15052 16 ICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQ 95 (421)
T ss_pred eeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCcccc
Confidence 489999999999999886 44443222211 11 1 2356777778876 46655555564333
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC
Q 038230 350 NEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF 392 (480)
Q Consensus 350 ~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf 392 (480)
+. ..++-++..++.+..-.++|++ +|-|||-++-
T Consensus 96 ~~-------pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~c 129 (421)
T PRK15052 96 QE-------PADAAMEKSVELVKAYVRAGFS--KIHLDASMSC 129 (421)
T ss_pred CC-------CHHHHHHHHHHHHHHHHHcCCc--eEEecCCCCc
Confidence 32 2445567778889999999998 9999997763
No 376
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=72.42 E-value=1.4e+02 Score=32.23 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCHHHHHHHHHcCCCEEecCCCCCCCc
Q 038230 248 ADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYSKVASEAVGKGAHIVNDVSAGQLDP 323 (480)
Q Consensus 248 AdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~~v~~aaL~~G~~iINdVsg~~~d~ 323 (480)
.+-|-+||.. |. .++ .+++.++...++..-... .+..+++ ++.+.+.++...++|+.-| |+--...++
T Consensus 115 i~~iy~GGGT--Ps--~L~-~~~l~~ll~~i~~~~~l~--~~~eitiE~~p~~~t~e~l~~l~~aGvnRi-SiGVQSf~d 186 (449)
T PRK09058 115 IHAVYFGGGT--PT--ALS-AEDLARLITALREYLPLA--PDCEITLEGRINGFDDEKADAALDAGANRF-SIGVQSFNT 186 (449)
T ss_pred eeEEEECCCc--cc--cCC-HHHHHHHHHHHHHhCCCC--CCCEEEEEeCcCcCCHHHHHHHHHcCCCEE-EecCCcCCH
Confidence 5678888743 32 122 366777766554433221 2456676 5677788877777787766 244334456
Q ss_pred hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHH
Q 038230 324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDI 402 (480)
Q Consensus 324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~ 402 (480)
++++.+.+. | + .+...+.++.+.++|+. +|.+|=.+|+ +.+.+.-.+.
T Consensus 187 ~vLk~lgR~-------~------~----------------~~~~~~~i~~l~~~g~~--~v~~DlI~GlPgqT~e~~~~~ 235 (449)
T PRK09058 187 QVRRRAGRK-------D------D----------------REEVLARLEELVARDRA--AVVCDLIFGLPGQTPEIWQQD 235 (449)
T ss_pred HHHHHhCCC-------C------C----------------HHHHHHHHHHHHhCCCC--cEEEEEEeeCCCCCHHHHHHH
Confidence 555443321 1 1 02334667777888865 7889988886 4444333333
Q ss_pred HHh
Q 038230 403 LLG 405 (480)
Q Consensus 403 lr~ 405 (480)
++.
T Consensus 236 l~~ 238 (449)
T PRK09058 236 LAI 238 (449)
T ss_pred HHH
Confidence 333
No 377
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=72.40 E-value=23 Score=36.81 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCEEEeCCC---------CCCC----CCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 235 AAVSQVRLMISEGADMIDIGAQ---------STRP----MATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~e---------StrP----~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
+..+-|+...++|.|.|+|.+. |... ..=.-|.+.-++-+..+|++|++.. +.||++
T Consensus 143 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~~~v~v 212 (337)
T PRK13523 143 AFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---DGPLFV 212 (337)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---CCCeEE
Confidence 3345678888899999999976 4322 2112356677888888999999863 455554
No 378
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=72.32 E-value=49 Score=34.01 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCCCCCCH---------HHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDI-GAQSTRPMATKISA---------EKELERLIPVLEAVLTMPEMEGKLVSVDTFY 298 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDI-G~eStrP~a~~v~~---------~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~ 298 (480)
...++|++++.|++..+.|+.-+-+ ||. .|....-.- ....+.+..+++.+++... .-.-+++...+
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~--~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~g~lt 109 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTEALFTFGE--KPEERYPEAREWLAEMGYDSTLEYLRELCELALEETG-LLPHTNPGVMS 109 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCC--CccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcC-CccccCCCCCC
Confidence 3589999999999999999986554 332 242210000 0012444455555553211 01235566666
Q ss_pred HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCC
Q 038230 299 SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSG 378 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G 378 (480)
.+.++.--++|+++ + .+.++..+.+..- +. +.. .|. + .|. ++ .+.++.|.+.|
T Consensus 110 ~e~l~~Lk~aG~~~-~-~~~Et~~~~l~~~-------~~--~~~-~p~---k----~~~-------~~-l~~i~~a~~~G 162 (322)
T TIGR03550 110 RDELARLKPVNASM-G-LMLETTSERLCKG-------EA--HYG-SPG---K----DPA-------VR-LETIEDAGRLK 162 (322)
T ss_pred HHHHHHHHhhCCCC-C-cchhhhccccccc-------cc--cCC-CCC---C----CHH-------HH-HHHHHHHHHcC
Confidence 66666555566553 2 2222222222200 00 110 010 0 111 12 46788889999
Q ss_pred CCCCCEEEecCCCCccChhHHHHHHHh
Q 038230 379 IPAWRIIIDPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 379 i~~~~IilDPgiGf~k~~~~~~~~lr~ 405 (480)
++ +-.+=.+|++.+.++-.+.+..
T Consensus 163 i~---~~s~~i~G~gEt~ed~~~~l~~ 186 (322)
T TIGR03550 163 IP---FTTGILIGIGETREERAESLLA 186 (322)
T ss_pred CC---ccceeeEeCCCCHHHHHHHHHH
Confidence 95 6666667888888766555443
No 379
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=72.08 E-value=62 Score=31.87 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCCE---EEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGADM---IDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdi---IDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~~~~v~~aaL~~G 309 (480)
+..+.|+.+.+.||+- .|+.+..+. . .. -...++.+.+. .++||.+ .-.+.+-++++++.|
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~--~-----~~----~~~~i~~i~~~---~~ipv~~~GGi~s~~~~~~~l~~G 96 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEG--R-----DT----MLDVVERVAEQ---VFIPLTVGGGIRSVEDARRLLRAG 96 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccc--C-----cc----hHHHHHHHHHh---CCCCEEeeCCCCCHHHHHHHHHcC
Confidence 4566777788999864 455531111 0 01 12345555554 3678877 678999999999999
Q ss_pred CCEEecCCC-CCCCch-HHHHHHhcC-CCEEE-EcCC-CC---CCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCC
Q 038230 310 AHIVNDVSA-GQLDPD-MYKVVAGLK-VPYVA-MHMR-GD---PSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPA 381 (480)
Q Consensus 310 ~~iINdVsg-~~~d~~-m~~l~~~~~-~~vVl-mh~~-g~---p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~ 381 (480)
++.+- +.. ...+++ +-++++.++ -.+++ +... |. |-+..-+-.....+ ....+.++.+.+.|+.
T Consensus 97 a~~Vi-igt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~g~~- 168 (253)
T PRK02083 97 ADKVS-INSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTG------LDAVEWAKEVEELGAG- 168 (253)
T ss_pred CCEEE-EChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecC------CCHHHHHHHHHHcCCC-
Confidence 88662 322 212455 445555564 23443 3322 11 11110000000000 1224556677788997
Q ss_pred CCEEEe---c-CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 382 WRIIID---P-GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 382 ~~IilD---P-giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
.|++= . |.+-+- ++++++++ +..+.|++.+
T Consensus 169 -~ii~~~i~~~g~~~g~----d~~~i~~~~~~~~ipvia~ 203 (253)
T PRK02083 169 -EILLTSMDRDGTKNGY----DLELTRAVSDAVNVPVIAS 203 (253)
T ss_pred -EEEEcCCcCCCCCCCc----CHHHHHHHHhhCCCCEEEE
Confidence 56552 2 322222 47778877 4568998864
No 380
>PRK15063 isocitrate lyase; Provisional
Probab=71.97 E-value=1.3e+02 Score=32.57 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE----eCCCH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQS-------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV----DTFYS 299 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eS-------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI----DT~~~ 299 (480)
.+...+.+.++.|+++||.-|=|==+- --.|...|+.+|-++||.-+..+-... +.|+-| |+...
T Consensus 158 Gg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~----g~~~vIiARTDA~aa 233 (428)
T PRK15063 158 GGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVM----GVPTLVIARTDAEAA 233 (428)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhc----CCCeEEEEECCcccc
Confidence 344458888999999999777663221 112445788888888876555433222 445544 66432
Q ss_pred --------------------------------HHHHHHHHc--CCCEEecCCCCCCCchHHHHHHhcCC--CEEEEcCCC
Q 038230 300 --------------------------------KVASEAVGK--GAHIVNDVSAGQLDPDMYKVVAGLKV--PYVAMHMRG 343 (480)
Q Consensus 300 --------------------------------~v~~aaL~~--G~~iINdVsg~~~d~~m~~l~~~~~~--~vVlmh~~g 343 (480)
++++.|+.+ |||+|-==++....+++..+++.-.. |.-+|....
T Consensus 234 ~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~ 313 (428)
T PRK15063 234 DLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNC 313 (428)
T ss_pred ccccccccccccccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCC
Confidence 455555443 99999622233323667777777665 544555433
Q ss_pred CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc
Q 038230 344 DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL 406 (480)
Q Consensus 344 ~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l 406 (480)
.|.-.=+ .+.+ + +.++.-.+.+.+.|+ ++.|=|..||........++++.+
T Consensus 314 sPsfnW~-~~~~--~------~~~~~f~~eL~~~Gy---~~~~~~la~~ha~~~a~~~~a~~~ 364 (428)
T PRK15063 314 SPSFNWK-KNLD--D------ATIAKFQRELGAMGY---KFQFITLAGFHSLNYSMFDLAHGY 364 (428)
T ss_pred CCCcccc-cccC--H------HHHHHHHHHHHHcCc---eEEEechHHHHHHHHHHHHHHHHH
Confidence 4431100 0111 1 223334456677999 599999988855444444444444
No 381
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=71.82 E-value=24 Score=39.13 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=105.1
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---e
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---D 295 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---D 295 (480)
..+..|+|+++ .+++.+++.++...+.||+.|-|. -|--. ...+|+.++ ++.+++.. ...+||+ |
T Consensus 140 ~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~--DTvG~----~~P~~v~~l---i~~l~~~~--~~~~i~vH~HN 207 (526)
T TIGR00977 140 YDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLC--DTNGG----TLPHEISEI---TTKVKRSL--KQPQLGIHAHN 207 (526)
T ss_pred EEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEe--cCCCC----cCHHHHHHH---HHHHHHhC--CCCEEEEEECC
Confidence 56667899887 489999999999999999999876 22211 223555554 55556543 1345888 5
Q ss_pred CCCHHH--HHHHHHcCCCEEecCCCCCCC----chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230 296 TFYSKV--ASEAVGKGAHIVNDVSAGQLD----PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369 (480)
Q Consensus 296 T~~~~v--~~aaL~~G~~iINdVsg~~~d----~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~ 369 (480)
++--.+ ..+|+++||+.|.---.+... ..+.+++... ....|.... ++.+ . +....+.+
T Consensus 208 D~GlAvANslaAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L------~~~~g~~~~----t~id----l-~~L~~~s~ 272 (526)
T TIGR00977 208 DSGTAVANSLLAVEAGATMVQGTINGYGERCGNANLCSLIPNL------QLKLGYDVI----PPEN----L-KKLTSTAR 272 (526)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccCccCCCcHHHHHHHH------HhhcCCCCC----CccC----H-HHHHHHHH
Confidence 555555 567899999998743333222 3344444421 111221100 0011 1 11233455
Q ss_pred HHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcc-c-CCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 370 KVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLA-A-SHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 370 ~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~-~-~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
.++.+...-+++.+-|+-.-..-.++..|-=-++++-. + +=-|=++|.+|+--+|... +..++...+-
T Consensus 273 ~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~Pe~vG~~~~i~lg~~S----------G~~~v~~~l~ 342 (526)
T TIGR00977 273 LVAEIVNLPPDDNMPYVGRSAFAHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSELA----------GLSNVLSKAK 342 (526)
T ss_pred HHHHHhCCCCCCCCCccCcceeeeeccccHHHHhCCccccccCCHHHcCCccEEEEeccc----------CHHHHHHHHH
Confidence 56666666666666444433322455555444455431 1 1124466765533332222 2233345555
Q ss_pred HcCCcE
Q 038230 448 LGGANI 453 (480)
Q Consensus 448 ~~Ga~I 453 (480)
+.|.++
T Consensus 343 ~~g~~l 348 (526)
T TIGR00977 343 EFGIEI 348 (526)
T ss_pred HcCCCC
Confidence 777665
No 382
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=71.70 E-value=74 Score=31.63 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCC---CEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe--CCCHHHHHHHHHcC
Q 038230 235 AAVSQVRLMISEGA---DMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD--TFYSKVASEAVGKG 309 (480)
Q Consensus 235 ~a~~~A~~~v~~GA---diIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID--T~~~~v~~aaL~~G 309 (480)
+.++.|+++.+.|| .+.|+.+.-+.-+ .-.++++.+.+. +++||.++ -...+-+++.++.|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~-----------~n~~~i~~i~~~---~~~pv~~gGGi~s~~d~~~l~~~G 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSE-----------PNYELIENLASE---CFMPLCYGGGIKTLEQAKKIFSLG 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCc-----------ccHHHHHHHHHh---CCCCEEECCCCCCHHHHHHHHHCC
Confidence 46778999999998 5678876422111 112455666654 36787765 45678888888889
Q ss_pred CCEEecCCCCC-CCc-hHHHHHHhcC--CCEEEEcCCCCCCc-cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 310 AHIVNDVSAGQ-LDP-DMYKVVAGLK--VPYVAMHMRGDPST-MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 310 ~~iINdVsg~~-~d~-~m~~l~~~~~--~~vVlmh~~g~p~~-~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
++.+- ++... .++ .+.++++.|+ ..++-+..+.-+.. ..-..+ .+.+ .......+.++.+.+.|+. .|
T Consensus 97 ~~~vv-igs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~-gw~~---~~~~~~~e~~~~~~~~g~~--~i 169 (258)
T PRK01033 97 VEKVS-INTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTH-NGTK---KLKKDPLELAKEYEALGAG--EI 169 (258)
T ss_pred CCEEE-EChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEc-CCee---cCCCCHHHHHHHHHHcCCC--EE
Confidence 87542 32211 234 4566667775 32333333211100 000000 0000 0001234666777889996 55
Q ss_pred EEe-c---CCCCccChhHHHHHHHhc-ccCCCcEEEe
Q 038230 385 IID-P---GLGFSKKAEHNLDILLGL-AASHAPILIG 416 (480)
Q Consensus 385 ilD-P---giGf~k~~~~~~~~lr~l-~~~g~Pil~G 416 (480)
++= - |..-+. ++++++++ ...+.|++.+
T Consensus 170 i~~~i~~~G~~~G~----d~~~i~~~~~~~~ipvIas 202 (258)
T PRK01033 170 LLNSIDRDGTMKGY----DLELLKSFRNALKIPLIAL 202 (258)
T ss_pred EEEccCCCCCcCCC----CHHHHHHHHhhCCCCEEEe
Confidence 543 2 222232 57777777 3578999864
No 383
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=71.62 E-value=1.4e+02 Score=31.42 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=86.5
Q ss_pred CHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----HcCCcCCCCeEEEeCCCHHHH-HH
Q 038230 232 SVEAAVSQ-VRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAV-----LTMPEMEGKLVSVDTFYSKVA-SE 304 (480)
Q Consensus 232 ~~e~a~~~-A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l-----~~~~~~~~~pISIDT~~~~v~-~a 304 (480)
+...++++ ++.+...|+++|=|==.|-.-+.. + ..+.++.+..++.+ .+- .++++.+=+ .+. ..
T Consensus 143 ~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~-~--~~~~~~~i~Al~~a~~~a~~~g---vdv~i~lH~---~l~~~~ 213 (344)
T PRK06052 143 SVERFVENAIKSAKNFKIKTISIDEPSLGINPE-I--QFSDDEIISALTVASTYARKQG---ADVEIHLHS---PLYYEL 213 (344)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEecCcccccCCc-c--ccCHHHHHHHHHHHHhhhccCC---cceEEEEeh---HhhHHH
Confidence 34445544 567788999999986322221211 1 11345555666666 322 266777666 466 66
Q ss_pred HHHc-CCCEEecCCCCCCCchHHHHHHhc---------CCCEEEE--cC--------C-----CCCCccccccccchhhH
Q 038230 305 AVGK-GAHIVNDVSAGQLDPDMYKVVAGL---------KVPYVAM--HM--------R-----GDPSTMQNEENLQYDDV 359 (480)
Q Consensus 305 aL~~-G~~iINdVsg~~~d~~m~~l~~~~---------~~~vVlm--h~--------~-----g~p~~~~~~~~~~~~~v 359 (480)
.++. |+++|+-=++. .++.+++..+. +++|+=. |+ - +.+.-|+...+. -+-
T Consensus 214 i~~~~~idvi~~E~A~--~~~~L~~l~~~~~e~~dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--VEs 289 (344)
T PRK06052 214 ICETPGINVIGVESAA--TPSYLDLIDKKVLEDTDTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTE--LET 289 (344)
T ss_pred HhcCCCCCEEeeeccC--ChHHHHHHhhhhhhhcCCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCC--CCC
Confidence 6776 59999854443 35666666653 3444433 31 0 122223322111 111
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCcc--ChhHHHHHHHhc
Q 038230 360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSK--KAEHNLDILLGL 406 (480)
Q Consensus 360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k--~~~~~~~~lr~l 406 (480)
+ ++..++++++.+. +++++++++|=-|+.. .....++.|+++
T Consensus 290 v----eEI~~rI~~ale~-i~~e~lwVNPDCGLK~~~e~~~A~~KL~nm 333 (344)
T PRK06052 290 P----EVIKKRLEKAYSI-FGDRIKYVGPDCGLGSWPSQELAFRLLENV 333 (344)
T ss_pred H----HHHHHHHHHHHHh-CChhhEEECCCCCCCCChhhHHHHHHHHHH
Confidence 2 4556777777776 7889999999666542 234445566654
No 384
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=71.43 E-value=1.4e+02 Score=34.58 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC-CHHHHHHHHHcCCCE
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPM--ATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF-YSKVASEAVGKGAHI 312 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~--a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~-~~~v~~aaL~~G~~i 312 (480)
+.++.+.++|+.+|=|=-.+-+-+ ...-+.++.+++.+.+++...+... .+..|++ +-. ..+++..-.+..+|.
T Consensus 585 ~Ev~~L~~aG~~~IQiDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~-~~~~i~tH~C~g~~~~i~~~i~~l~vD~ 663 (758)
T PRK05222 585 DEVLDLEAAGIKIIQIDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVK-DETQIHTHMCYSEFNDIIDAIAALDADV 663 (758)
T ss_pred HHHHHHHHcCCCEEEeeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCC-CCCEEEEEEeccChHHHHHHHHhCCCCE
Confidence 446778889999998864333322 1223345667777777776665421 1345544 432 334444444457887
Q ss_pred EecCCCCCCCchHHHHHHhcCC--CEEE----EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 313 VNDVSAGQLDPDMYKVVAGLKV--PYVA----MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 313 INdVsg~~~d~~m~~l~~~~~~--~vVl----mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
+. +-......+.++..++++. .+++ .|+.-.|. . +...++++++.+. ++++++++
T Consensus 664 ~~-lE~~rs~~e~L~~~~~~~~~~~iglGVvd~~s~~ves-------------~----eei~~rI~~a~~~-v~~e~l~v 724 (758)
T PRK05222 664 IS-IETSRSDMELLDAFEDFGYPNEIGPGVYDIHSPRVPS-------------V----EEIEELLRKALEV-IPAERLWV 724 (758)
T ss_pred EE-EEecCCCchhHHHhhccCCCCeEEEEEEcCCCCCCCC-------------H----HHHHHHHHHHHHh-CChheEEE
Confidence 65 2222212467777777532 2332 23221111 1 4456777777766 56789999
Q ss_pred ecCCCCcc-ChhHHHHHHHhc
Q 038230 387 DPGLGFSK-KAEHNLDILLGL 406 (480)
Q Consensus 387 DPgiGf~k-~~~~~~~~lr~l 406 (480)
.|=-||.. +.++.+.-|+++
T Consensus 725 ~PdCGl~t~~~~~~~~kL~~m 745 (758)
T PRK05222 725 NPDCGLKTRGWEETIAALKNM 745 (758)
T ss_pred eCCCCCcCCCHHHHHHHHHHH
Confidence 99888854 344445555554
No 385
>PRK12677 xylose isomerase; Provisional
Probab=71.25 E-value=1.5e+02 Score=31.56 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCCCCCCCC-ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-Ee--
Q 038230 220 TPDSFSDGG-KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VD-- 295 (480)
Q Consensus 220 tpDSFsdgg-~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-ID-- 295 (480)
.-|.|-+.. ...+.++ .+.++.+.|++-|.+...-.-|... +..+.-..+..+-+.+++. ++.|+ +-
T Consensus 19 ~~~~~g~~~~~~~~~~E---~v~~~a~~Gf~gVElh~~~l~p~~~--~~~~~~~~~~~lk~~l~~~----GL~v~~v~~n 89 (384)
T PRK12677 19 GRDPFGDATRPPLDPVE---AVHKLAELGAYGVTFHDDDLVPFGA--TDAERDRIIKRFKKALDET----GLVVPMVTTN 89 (384)
T ss_pred CCCCCCCCCCCCCCHHH---HHHHHHHhCCCEEEecccccCCCCC--ChhhhHHHHHHHHHHHHHc----CCeeEEEecC
Confidence 357787773 3456555 4566667899999997533233211 1111111233333444443 66655 32
Q ss_pred CC-------------CHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHH
Q 038230 296 TF-------------YSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQ 362 (480)
Q Consensus 296 T~-------------~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~e 362 (480)
++ ++++-+.|++. -.+.+++|++.||+.|+++....+..-. ....|....+.
T Consensus 90 ~f~~p~~~~g~lts~d~~~R~~Ai~~-------------~~r~IdlA~eLGa~~Vvv~~G~~g~~~~--~~~d~~~a~~~ 154 (384)
T PRK12677 90 LFTHPVFKDGAFTSNDRDVRRYALRK-------------VLRNIDLAAELGAKTYVMWGGREGAEYD--AAKDVRAALDR 154 (384)
T ss_pred CCCCccccCCcCCCCCHHHHHHHHHH-------------HHHHHHHHHHhCCCEEEEeeCCCCccCc--ccCCHHHHHHH
Confidence 22 12222222211 1356789999999988887532211000 00123344445
Q ss_pred HHHHHHHHHHHHHHC--CCCCCCEEEecCCC------CccChhHHHHHHHhc
Q 038230 363 VASELYSKVRDAELS--GIPAWRIIIDPGLG------FSKKAEHNLDILLGL 406 (480)
Q Consensus 363 v~~~l~~~i~~a~~~--Gi~~~~IilDPgiG------f~k~~~~~~~~lr~l 406 (480)
..+.+.+..+.+.+. |+ +|.|-|--. |..+..+.+.+++.+
T Consensus 155 ~~eaL~~l~~~A~~~G~gV---~laIEpkp~ep~~~~~l~t~~~al~li~~l 203 (384)
T PRK12677 155 YREAIDLLAAYVKDQGYDL---RFALEPKPNEPRGDILLPTVGHALAFIATL 203 (384)
T ss_pred HHHHHHHHHHHHHhcCCCc---EEEEccCCCCCCCCeeeCCHHHHHHHHHHh
Confidence 556677778888874 48 599998532 346667777888775
No 386
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=71.12 E-value=27 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCEEEeCC
Q 038230 236 AVSQVRLMISEGADMIDIGA 255 (480)
Q Consensus 236 a~~~A~~~v~~GAdiIDIG~ 255 (480)
|++.|+++++.|||-+-||.
T Consensus 336 ~~e~~~~~l~~GadkV~i~s 355 (538)
T PLN02617 336 SLEVASEYFRSGADKISIGS 355 (538)
T ss_pred hHHHHHHHHHcCCCEEEECh
Confidence 68999999999999999994
No 387
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=71.11 E-value=1.2e+02 Score=36.91 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHH--cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe----------EEEeCCC
Q 038230 231 QSVEAAVSQVRLMIS--EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL----------VSVDTFY 298 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~--~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p----------ISIDT~~ 298 (480)
...++.+..|..+-+ .|..-+++.|..|.--+-.--.|+=|+||.. +++.. +++| +.-..|-
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~----~r~~~--pn~~~qml~Rg~n~vgy~~yp 623 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLED----LRKGV--PNILFQMLLRGANGVGYTNYP 623 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHH----HHHhC--CCCceeeeeccccccCccCCC
Confidence 456788999999888 4999999998877642211112344888744 34332 2333 4466677
Q ss_pred HHHHHHHH----HcCCCEEecCCCCCCCch---HHHHHHhcCCCE--EEEcCCCCCCccccccccchhhHHHHHHHHHHH
Q 038230 299 SKVASEAV----GKGAHIVNDVSAGQLDPD---MYKVVAGLKVPY--VAMHMRGDPSTMQNEENLQYDDVCKQVASELYS 369 (480)
Q Consensus 299 ~~v~~aaL----~~G~~iINdVsg~~~d~~---m~~l~~~~~~~v--Vlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~ 369 (480)
-+|++.-+ +.|.|++--..+.++-+. ..+.+++.|.-+ .++.+. ...++.+ +. |+ .+++.+
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~-~~~d~~~-~~--~~------l~y~~~ 693 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTG-DILDPAR-PK--YD------LKYYTN 693 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEec-cCCCcCC-CC--CC------HHHHHH
Confidence 77776655 459998877766663343 567777888543 244442 1111111 11 11 267778
Q ss_pred HHHHHHHCCCCCCCEEE-ecCCCCccChhHHHHHHHhcc-cCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 370 KVRDAELSGIPAWRIII-DPGLGFSKKAEHNLDILLGLA-ASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 370 ~i~~a~~~Gi~~~~Iil-DPgiGf~k~~~~~~~~lr~l~-~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
.++.+.++|+. .|.| |. .|..+ +.+..++++.++ ..+.|+=+ |. .+..+...+.+..|+
T Consensus 694 ~ak~l~~~Gad--~I~ikDt-~Gll~-P~~~~~Lv~~lk~~~~~pi~~-H~--------------Hdt~Gla~an~laA~ 754 (1143)
T TIGR01235 694 LAVELEKAGAH--ILGIKDM-AGLLK-PAAAKLLIKALREKTDLPIHF-HT--------------HDTSGIAVASMLAAV 754 (1143)
T ss_pred HHHHHHHcCCC--EEEECCC-cCCcC-HHHHHHHHHHHHHhcCCeEEE-EE--------------CCCCCcHHHHHHHHH
Confidence 88888999985 4444 43 33333 344566777763 35777643 11 122233445556788
Q ss_pred HcCCcEEEcCC
Q 038230 448 LGGANIVRVHN 458 (480)
Q Consensus 448 ~~Ga~IlRvHd 458 (480)
+.||+++.+-=
T Consensus 755 eaGad~vD~ai 765 (1143)
T TIGR01235 755 EAGVDVVDVAV 765 (1143)
T ss_pred HhCCCEEEecc
Confidence 99999987754
No 388
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=71.06 E-value=9.1 Score=38.97 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=37.4
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPV 277 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~v 277 (480)
+||.--|.|--|| .|++++||+.++++|||+|=.=+ +...+|++++...
T Consensus 152 vi~ARTda~~~~~----ld~AI~Ra~AY~eAGAD~if~~a---------l~~~e~i~~f~~a 200 (289)
T COG2513 152 VIIARTDALLVEG----LDDAIERAQAYVEAGADAIFPEA---------LTDLEEIRAFAEA 200 (289)
T ss_pred EEEeehHHHHhcc----HHHHHHHHHHHHHcCCcEEcccc---------CCCHHHHHHHHHh
Confidence 5666778888888 78999999999999999996533 2335777766433
No 389
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=70.95 E-value=32 Score=34.47 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=49.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeC--CCCCC-CCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC------
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIG--AQSTR-PMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY------ 298 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG--~eStr-P~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~------ 298 (480)
.+.+.++....++...+.|.+=|=+. |-|+. |.. ..++ + ..+..+++. .++||.+|+.+
T Consensus 141 ~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~d----l----~~i~~lk~~---~~~pV~~ds~Hs~G~r~ 209 (260)
T TIGR01361 141 MGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLD----L----SAVPVLKKE---THLPIIVDPSHAAGRRD 209 (260)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcC----H----HHHHHHHHh---hCCCEEEcCCCCCCccc
Confidence 44578999999999999999534332 34555 321 1122 2 234555654 37999999988
Q ss_pred --HHHHHHHHHcCCC--EEe
Q 038230 299 --SKVASEAVGKGAH--IVN 314 (480)
Q Consensus 299 --~~v~~aaL~~G~~--iIN 314 (480)
+.++.+|+..|++ +|.
T Consensus 210 ~~~~~~~aAva~Ga~gl~iE 229 (260)
T TIGR01361 210 LVIPLAKAAIAAGADGLMIE 229 (260)
T ss_pred hHHHHHHHHHHcCCCEEEEE
Confidence 8888888888888 553
No 390
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=70.92 E-value=95 Score=29.82 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
+.|+++++.|||.+=+|... -++.+.+..+.+.+.+ ..+.+|||..
T Consensus 86 e~~~~~~~~Gad~vvigs~~----------l~dp~~~~~i~~~~g~----~~i~~sid~~ 131 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA----------VKNPELVKELLKEYGG----ERIVVGLDAK 131 (234)
T ss_pred HHHHHHHHcCCCEEEECchH----------HhChHHHHHHHHHcCC----ceEEEEEEee
Confidence 45677788999999998532 1224444444544432 2678899854
No 391
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=70.89 E-value=5.6 Score=39.44 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=35.0
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHH
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLI 275 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~ 275 (480)
+||.--|+|.- .....|++++|++.+.++|||.|=+=+. ..++|++++.
T Consensus 139 ~I~ARTDa~~~--~~~~~deaI~R~~aY~eAGAD~ifi~~~---------~~~~~i~~~~ 187 (238)
T PF13714_consen 139 VIIARTDAFLR--AEEGLDEAIERAKAYAEAGADMIFIPGL---------QSEEEIERIV 187 (238)
T ss_dssp EEEEEECHHCH--HHHHHHHHHHHHHHHHHTT-SEEEETTS---------SSHHHHHHHH
T ss_pred EEEEecccccc--CCCCHHHHHHHHHHHHHcCCCEEEeCCC---------CCHHHHHHHH
Confidence 66777788863 1235689999999999999999988652 2346676654
No 392
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=70.76 E-value=1.3e+02 Score=30.77 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--C-----------
Q 038230 235 AAVSQVRLMISEGADMIDIGAQSTRPMATKIS---AEKELERLIPVLEAVLTMPEMEGKLVSVDTF--Y----------- 298 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~---~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~----------- 298 (480)
...+.++.+.+.|+++|=|--.+.. ...+ .+.....+..+++.+.+.. .+..+.+-+. +
T Consensus 156 ~~~~e~~~l~~aG~~~iQiDEP~l~---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~v~lHiC~G~~~~~~~~~~~y 230 (332)
T cd03311 156 ALREEIRDLYDAGCRYIQIDEPALA---EGLPLEPDDLAADYLKWANEALADRP--DDTQIHTHICYGNFRSTWAAEGGY 230 (332)
T ss_pred HHHHHHHHHHHcCCCEEEeecchhh---ccCCcccHHHHHHHHHHHHHHHHhCC--CCCEEEEEEECCCCcccccccCcH
Confidence 3345677888899999988632211 1222 2455666777788887521 2455544332 2
Q ss_pred HHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcC--CCEEE--EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 038230 299 SKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDA 374 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a 374 (480)
..+++.-++.+++.+. +........-++.++++. ..+++ ... .++.. ++ . +.+.++++++
T Consensus 231 ~~i~~~l~~~~vd~~~-le~~~~~~~~~~~l~~~~~~k~l~~GvVd~----~~~~~------e~-~----e~v~~ri~~~ 294 (332)
T cd03311 231 EPIAEYIFELDVDVFF-LEYDNSRAGGLEPLKELPYDKKVGLGVVDV----KSPEV------ES-P----EEVKDRIEEA 294 (332)
T ss_pred HHHHHHHHhCCCCEEE-EEEcCCCCcchHHHHhCCCCCEEEeeeecC----CCCCC------CC-H----HHHHHHHHHH
Confidence 3566677777888764 221111122345555543 22332 121 11110 11 1 3345666667
Q ss_pred HHCCCCCCCEEEecCCCCccChh-HHHHHHHhc
Q 038230 375 ELSGIPAWRIIIDPGLGFSKKAE-HNLDILLGL 406 (480)
Q Consensus 375 ~~~Gi~~~~IilDPgiGf~k~~~-~~~~~lr~l 406 (480)
.+.. +.+++++.|.-||+.... ..+..++++
T Consensus 295 ~~~~-~~~~l~lsp~CGl~~~~~~~a~~kl~~~ 326 (332)
T cd03311 295 AKYV-PLEQLWVSPDCGFATRERGNALTKLENM 326 (332)
T ss_pred HhhC-CHHHEEECCCCCCCcCCCchhHHHHHHH
Confidence 6653 357899999988865443 224444443
No 393
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=70.55 E-value=1.4e+02 Score=31.09 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHcCCcCCCCe--EEEeCCCHHHHHHHHHc-CCCEEe
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKI-SAEKELERLIPVLEAVLTMPEMEGKL--VSVDTFYSKVASEAVGK-GAHIVN 314 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v-~~~eE~~rl~~vi~~l~~~~~~~~~p--ISIDT~~~~v~~aaL~~-G~~iIN 314 (480)
.++.+.++|+.+|-|=-.+-+-+-... + ++++++....++....... .+.- .-|+.++..-+-.++.. .++.+.
T Consensus 163 ev~~l~~agi~~iQiDEpal~~~~~~~~~-~~~l~~~~~~~~~~~~~~~-~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~ 240 (330)
T COG0620 163 EVKDLEDAGIKIIQIDEPALREGLPLRRD-DDYLEWAVEAINLAAAGVG-ADTQIHLHICYSEFNDIPDAIEALDADVID 240 (330)
T ss_pred HHHHHHHcCCCEEeechhhhhcCCccccc-hHHHHHHHHHHHHHHhcCC-CCcEEEEEEECCcccchhHHHhhcCCcEEe
Confidence 357788899999986421111111111 3 4778888877777665311 1333 44677766655555554 788887
Q ss_pred cCCCCCCCchHHHHHHhc------CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 315 DVSAGQLDPDMYKVVAGL------KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 315 dVsg~~~d~~m~~l~~~~------~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
.-.+.. +-+.++...++ |.+++=.|+.-.+. . +....+++++.+. +++++++++|
T Consensus 241 ~e~~~s-~~~~~~~~~~~~~~~~Ig~Gv~d~~~~~ve~-------------~----eei~~~i~k~~~~-~~~e~~~vnP 301 (330)
T COG0620 241 IETSRS-RMELLEVLEEVKYDKEIGLGVVDIHSPKVES-------------V----EEIAARIRKALER-VPPERLYVNP 301 (330)
T ss_pred eecccc-ccchhHHHHhccCCCeeecceEecCCCCcCC-------------H----HHHHHHHHHHHHh-CChheEEEcC
Confidence 666543 44466666653 44555555432221 1 3344666666544 5678999999
Q ss_pred CCCCccCh-hHHHHHHHhc
Q 038230 389 GLGFSKKA-EHNLDILLGL 406 (480)
Q Consensus 389 giGf~k~~-~~~~~~lr~l 406 (480)
=-||..-. +..++.|+++
T Consensus 302 DCGl~~~~~~~a~~kL~nm 320 (330)
T COG0620 302 DCGLKTLPREIAEAKLENM 320 (330)
T ss_pred CCCcccCcHHHHHHHHHHH
Confidence 77764433 3334445544
No 394
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=70.46 E-value=29 Score=40.15 Aligned_cols=59 Identities=24% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCC---------CCCCCC----CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 235 AAVSQVRLMISEGADMIDIGAQ---------STRPMA----TKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 235 ~a~~~A~~~v~~GAdiIDIG~e---------StrP~a----~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
+..+-|++..++|.|.|+|.+. |...+. -.-|.|.=++-+..++++|++... .+.||++
T Consensus 552 ~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~-~~~~v~~ 623 (765)
T PRK08255 552 DFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWP-AEKPMSV 623 (765)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcC-CCCeeEE
Confidence 3345677888999999999876 533321 122455567778889999998642 2456554
No 395
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=70.41 E-value=1.2e+02 Score=30.87 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCc-CCCCeEEEeC-CCHHHHHHHHH---
Q 038230 233 VEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPE-MEGKLVSVDT-FYSKVASEAVG--- 307 (480)
Q Consensus 233 ~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~-~~~~pISIDT-~~~~v~~aaL~--- 307 (480)
...+...+++++++|..++|+-..........++.+++++.+...+...++... ...+.++++. ..++.+++.++
T Consensus 72 ~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (325)
T cd01320 72 ERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQETLELAL 151 (325)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHHHHHHHH
Q ss_pred -------cCCCEEecCCCCCCC--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHH-----------
Q 038230 308 -------KGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASEL----------- 367 (480)
Q Consensus 308 -------~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l----------- 367 (480)
.|.++-.+-.....+ ..++..++++|.++.+ |..+... .+-+.+..+.+
T Consensus 152 ~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~-H~~E~~~----------~~~~~~a~~~~g~~~i~H~~~l 220 (325)
T cd01320 152 KYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTA-HAGEAGG----------PESVRDALDLLGAERIGHGIRA 220 (325)
T ss_pred hccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEE-eCCCCCC----------HHHHHHHHHHcCCcccchhhcc
Q ss_pred ---HHHHHHHHHCCCCCCCEEEecCCCC--ccChhHHHHHHHhcccCCCcEEEe
Q 038230 368 ---YSKVRDAELSGIPAWRIIIDPGLGF--SKKAEHNLDILLGLAASHAPILIG 416 (480)
Q Consensus 368 ---~~~i~~a~~~Gi~~~~IilDPgiGf--~k~~~~~~~~lr~l~~~g~Pil~G 416 (480)
.+.++.+.+.|+. +.+=|..-+ +........-++.+...|+|+.+|
T Consensus 221 ~~~~~~~~~l~~~gi~---v~~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~v~lg 271 (325)
T cd01320 221 IEDPELVKRLAERNIP---LEVCPTSNVQTGAVKSLAEHPLRELLDAGVKVTIN 271 (325)
T ss_pred CccHHHHHHHHHcCCe---EEECCCccccccccCCcccChHHHHHHCCCEEEEC
No 396
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=70.41 E-value=80 Score=32.24 Aligned_cols=110 Identities=12% Similarity=0.146 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCC---C--ch----HHHHHHhc--CCCEEE
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQL---D--PD----MYKVVAGL--KVPYVA 338 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~---d--~~----m~~l~~~~--~~~vVl 338 (480)
+..+++..++.. -..-+++.++.+.+++.+++ ++++|-.++-... . +. +...+.++ ++||++
T Consensus 6 ~k~iL~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l 82 (288)
T TIGR00167 6 VKELLQDAKEEG---YAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL 82 (288)
T ss_pred HHHHHHHHHHCC---ceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 444556556542 24559999999999888875 8999888876431 1 12 33455566 788887
Q ss_pred EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 339 mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
--+.|.. .+.+.+|.+.|++ .|-+| |-.-+.++|++.-+++ +..|+++
T Consensus 83 HLDHg~~----------------------~e~i~~ai~~Gft--SVMiD---gS~lp~eeNi~~T~~vv~~Ah~~gv~V 134 (288)
T TIGR00167 83 HLDHGAS----------------------EEDCAQAVKAGFS--SVMID---GSHEPFEENIELTKKVVERAHKMGVSV 134 (288)
T ss_pred ECCCCCC----------------------HHHHHHHHHcCCC--EEEec---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 4333321 1456677789998 89999 4455678888887776 3456655
No 397
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=70.40 E-value=21 Score=36.86 Aligned_cols=57 Identities=30% Similarity=0.299 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEeCCCCCC-CCCCCCC-HHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 232 SVEAAVSQVRLMISEG-ADMIDIGAQSTR-PMATKIS-AEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~G-AdiIDIG~eStr-P~a~~v~-~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
+.++..+.++.+.+.| ||+|.+|..|-. |+...+. ..|.+ ..+++++++. ..+||.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l---~~l~~~vk~~---~~~Pv~v 166 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELL---EKLLEAVKAA---TKVPVFV 166 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHH---HHHHHHHHhc---ccCceEE
Confidence 4567778888888888 999999986533 2221222 22334 4455555655 3566655
No 398
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.33 E-value=76 Score=33.93 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=77.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCC-CeEEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEG-KLVSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~-~pISIDT~~~~v~~aaL 306 (480)
+..+++++++.++.+++.|+.-|-+.++.+.- |.+ ... ..++..+++.+.+.. + ..|.+-+.+|.-
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d-~~~---~~~l~~Ll~~l~~~~---~~~~ir~~~~~p~~----- 218 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHD-LPE---KPCLADLLSALHDIP---GLLRIRFLTSHPKD----- 218 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccC-CCC---cccHHHHHHHHHhcC---CccEEEEeccChhh-----
Confidence 45789999999999999999888777655432 111 111 123555566665531 2 345555555531
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--C
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS--G 378 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--G 378 (480)
+ +++++++.++++ ++.+-+..+ |.+. .|.+. |. .+.+.+.++.+.++ |
T Consensus 219 ---------i-----~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~----~~------~~~~~~~i~~lr~~~pg 274 (418)
T PRK14336 219 ---------I-----SQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRG----YT------NQQYRELVERLKTAMPD 274 (418)
T ss_pred ---------c-----CHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCC----CC------HHHHHHHHHHHHhhCCC
Confidence 1 356777777754 554444332 2221 22221 10 24456778888887 7
Q ss_pred CCCCCEEEecCCCC-ccChhHHHHHHH
Q 038230 379 IPAWRIIIDPGLGF-SKKAEHNLDILL 404 (480)
Q Consensus 379 i~~~~IilDPgiGf-~k~~~~~~~~lr 404 (480)
+. +..|=.+|| +.+.++..++++
T Consensus 275 i~---i~~d~IvGfPGET~edf~~tl~ 298 (418)
T PRK14336 275 IS---LQTDLIVGFPSETEEQFNQSYK 298 (418)
T ss_pred CE---EEEEEEEECCCCCHHHHHHHHH
Confidence 74 777877887 555544333333
No 399
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=70.21 E-value=66 Score=34.02 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEeCCCC--------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE
Q 038230 236 AVSQVRLMISEGADMIDIGAQS--------------TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV 294 (480)
Q Consensus 236 a~~~A~~~v~~GAdiIDIG~eS--------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI 294 (480)
-.+-|+...++|.|.|+|.+.. .|...=.-|.+.-.+-+..+|++|++... .+.||++
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g-~~f~v~v 223 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCG-EDFPVSL 223 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcC-CCceEEE
Confidence 3455667778999999997632 22211123456677888899999998632 2456655
No 400
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.21 E-value=38 Score=34.16 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=50.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIG--AQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-------- 298 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG--~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-------- 298 (480)
...+.++++..++...+.|-.-+=+. |.+|.++.. .+.++. ..+..+++. .++||.+|+.+
T Consensus 143 ~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~----~~~vdl--~~i~~lk~~---~~~pV~~D~sHs~G~~~~v 213 (266)
T PRK13398 143 MSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT----RNTLDL--AAVAVIKEL---SHLPIIVDPSHATGRRELV 213 (266)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC----HHHHHH--HHHHHHHhc---cCCCEEEeCCCcccchhhH
Confidence 44688899999999988898433222 222344433 122221 234555655 37999999888
Q ss_pred HHHHHHHHHcCCC--EEe
Q 038230 299 SKVASEAVGKGAH--IVN 314 (480)
Q Consensus 299 ~~v~~aaL~~G~~--iIN 314 (480)
+..+.+|+.+|++ +|-
T Consensus 214 ~~~~~aAva~Ga~Gl~iE 231 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIE 231 (266)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 8888888988988 664
No 401
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=70.16 E-value=1.1e+02 Score=37.35 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCCCCCCccCCHHHHHH----HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe--EE-
Q 038230 221 PDSFSDGGKFQSVEAAVS----QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL--VS- 293 (480)
Q Consensus 221 pDSFsdgg~~~~~e~a~~----~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p--IS- 293 (480)
||+.+.|=+..+.+++.+ +++.+++.|+|+|=+-. -|. -.|.+-.+..++..-+.. ..++| +|
T Consensus 131 p~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliET---i~d------~~EakAal~a~~~~~~~~-~~~lPv~vS~ 200 (1178)
T TIGR02082 131 PDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIET---CFD------TLNAKAALFAAETVFEEK-GRELPIMISG 200 (1178)
T ss_pred CccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec---cCC------HHHHHHHHHHHHHHHhhc-CCCCeEEEEE
Confidence 555554423356676664 47777899999999863 332 255555544454432110 02455 55
Q ss_pred --EeC-------CCHHHHHHHHHc-CCCEEecCCCCCCCchHHHHHHhc----CCCEEEEcCCCCCCccc
Q 038230 294 --VDT-------FYSKVASEAVGK-GAHIVNDVSAGQLDPDMYKVVAGL----KVPYVAMHMRGDPSTMQ 349 (480)
Q Consensus 294 --IDT-------~~~~v~~aaL~~-G~~iINdVsg~~~d~~m~~l~~~~----~~~vVlmh~~g~p~~~~ 349 (480)
.|. ..++.+-..++. |++.|= +++...-+.|.+++++. +.++.+.++-|.|....
T Consensus 201 ~~~d~~Gr~~~G~~~~~~~~~l~~~~~~avG-lNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~ 269 (1178)
T TIGR02082 201 TIVDTSGRTLSGQTIEAFLTSLEHAGIDMIG-LNCALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFG 269 (1178)
T ss_pred EEECCCCeeCCCCcHHHHHHHHhcCCCCEEE-eCCCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCC
Confidence 332 344555555553 777643 55543224565555543 67888889999987653
No 402
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=70.09 E-value=32 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
.++.+++.||+.+.+|...- ++.+.+..+.+.+-. ..+.+|||..
T Consensus 90 ~~~~~~~~Ga~~v~iGs~~~----------~~~~~~~~i~~~~g~----~~i~~sid~~ 134 (241)
T PRK13585 90 DAASLLDLGVDRVILGTAAV----------ENPEIVRELSEEFGS----ERVMVSLDAK 134 (241)
T ss_pred HHHHHHHcCCCEEEEChHHh----------hChHHHHHHHHHhCC----CcEEEEEEee
Confidence 45667789999999996431 112333333333322 2577899964
No 403
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.07 E-value=93 Score=33.63 Aligned_cols=140 Identities=15% Similarity=0.219 Sum_probs=78.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~ 308 (480)
+..+++++++.++.+++.|..-|-+-++.+.-...... .. .+..+++.+.+.. .+..|-+-+.+|..
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~-~~---~l~~Ll~~l~~~~--~~~rir~~~~~p~~------- 242 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA-GA---DFAGLLDAVSRAA--PEMRIRFTTSHPKD------- 242 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC-Cc---hHHHHHHHHhhcC--CCcEEEEccCChhh-------
Confidence 55789999999999999999888664433221000000 01 2334455554321 12334333344321
Q ss_pred CCCEEecCCCCCCCchHHHHHHhc--CCCEEEEcCC-CCC---CccccccccchhhHHHHHHHHHHHHHHHHHHC--CCC
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGL--KVPYVAMHMR-GDP---STMQNEENLQYDDVCKQVASELYSKVRDAELS--GIP 380 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~--~~~vVlmh~~-g~p---~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~ 380 (480)
.+++++++.+++ +|..+-+..+ |.+ +.|.+. |. .+.+.+.++++.++ |+.
T Consensus 243 ------------l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~----~t------~~~~~~~v~~lr~~~pgi~ 300 (445)
T PRK14340 243 ------------ISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRG----HT------IEEYLEKIALIRSAIPGVT 300 (445)
T ss_pred ------------cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCC----CC------HHHHHHHHHHHHHhCCCCE
Confidence 246788888886 5777776653 222 233331 10 13456788888888 884
Q ss_pred CCCEEEecCCCC-ccChhH---HHHHHHhc
Q 038230 381 AWRIIIDPGLGF-SKKAEH---NLDILLGL 406 (480)
Q Consensus 381 ~~~IilDPgiGf-~k~~~~---~~~~lr~l 406 (480)
+-.|=-+|| +.+.++ .++.++++
T Consensus 301 ---i~td~IvGfPgET~edf~~tl~~~~~~ 327 (445)
T PRK14340 301 ---LSTDLIAGFCGETEEDHRATLSLMEEV 327 (445)
T ss_pred ---EeccEEEECCCCCHHHHHHHHHHHHhc
Confidence 777777787 555544 34445543
No 404
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.06 E-value=90 Score=33.82 Aligned_cols=140 Identities=18% Similarity=0.220 Sum_probs=75.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAVG 307 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL~ 307 (480)
+..+++++++.++.+.+.|+..|-+.+..+.-.....+.. .++..+++.+.+. .++ .|.+-|.+|..
T Consensus 182 rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~---~~l~~Ll~~l~~~---~gi~~ir~~~~~p~~------ 249 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGR---PDLADLLEAVHEI---PGLERLRFLTSHPAW------ 249 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCCh---HHHHHHHHHHHhc---CCcceEEEEecChhh------
Confidence 4578999999999999999998888765433211111111 2355566666653 132 34444544421
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--CC
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS--GI 379 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi 379 (480)
.++++++++++++ +..+-+..+ |.+. .|.+. +. .+.+.+.++.+.++ |+
T Consensus 250 -------------i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~--~t--------~e~~~~~i~~lr~~~pgi 306 (459)
T PRK14338 250 -------------MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRG--YT--------VARYRELIARIREAIPDV 306 (459)
T ss_pred -------------cCHHHHHHHhcccccccceecCcccCCHHHHHhccCC--CC--------HHHHHHHHHHHHHhCCCC
Confidence 1356667766654 333333222 2222 12111 11 13344666677666 55
Q ss_pred CCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 380 PAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 380 ~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
.|..|=.+|| +.+.++-.++++.+
T Consensus 307 ---~i~~d~IvG~PgET~ed~~~ti~~l 331 (459)
T PRK14338 307 ---SLTTDIIVGHPGETEEQFQRTYDLL 331 (459)
T ss_pred ---EEEEEEEEECCCCCHHHHHHHHHHH
Confidence 3677777787 56655544444444
No 405
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=69.89 E-value=62 Score=35.33 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH----------H
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS----------K 300 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~----------~ 300 (480)
.+.+++++.+++.. .+||++.+=... .+..+. .+++++ .+. .+.|| + |+++ +
T Consensus 9 ~~~~e~~~~~~~~~-~~~D~vE~R~D~----~~~~~~-~~~~~l-------~~~---~~~pi-l-T~R~~~~~~~~~~~~ 70 (477)
T PRK09310 9 PSFLEAKQQILRSL-KLVDCIELRVDL----LLSLSD-LELKKL-------IEL---APIPI-L-TWKKHESCSQAAWID 70 (477)
T ss_pred CCHHHHHHHHHHhc-ccCCEEEEEehh----hccCCH-HHHHHH-------Hhc---CCCce-E-EeccCccCCHHHHHH
Confidence 46788888888887 889999886532 112222 224322 222 24454 3 7774 4
Q ss_pred HHHHHHHcCCCEEecCCCCCCCchHHHHHH-hcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 301 VASEAVGKGAHIVNDVSAGQLDPDMYKVVA-GLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 301 v~~aaL~~G~~iINdVsg~~~d~~m~~l~~-~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
.++++++.|+++| ||.-...++.+-++.+ +.++.+|+.+-+ .. . +.+.++++++.+.|-
T Consensus 71 ~l~~~~~~~~d~v-DiEl~~~~~~~~~l~~~~~~~kvI~S~Hd--f~---~--------------~~l~~~~~~~~~~ga 130 (477)
T PRK09310 71 KMQSLAKLNPNYL-DIDKDFPKEALIRIRKLHPKIKIILSYHT--SE---H--------------EDIIQLYNEMLASAA 130 (477)
T ss_pred HHHHHHHhCCCEE-EEEecCCHHHHHHHHHhCCCCEEEEEcCC--CC---c--------------chHHHHHHHHHHcCC
Confidence 4777888898888 4653332233434433 347888876432 10 0 234567778888885
Q ss_pred CCCCEEEecCCCCccChhHHHHHHHhcccCCCc
Q 038230 380 PAWRIIIDPGLGFSKKAEHNLDILLGLAASHAP 412 (480)
Q Consensus 380 ~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~P 412 (480)
+--+|. .++++..+++.+++-.+....|
T Consensus 131 Di~Kia-----~~a~~~~D~l~ll~~~~~~~~p 158 (477)
T PRK09310 131 DYYKIA-----VSSSSSTDLLNIIHQKRSLPEN 158 (477)
T ss_pred CEEEEe-----eCCCCHHHHHHHHHHHhhCCCC
Confidence 422333 3457778888887754334456
No 406
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.81 E-value=38 Score=34.25 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCC---------CCCCCC----CCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE--eCC
Q 038230 233 VEAAVSQVRLMISEGADMIDIGA---------QSTRPM----ATKISAEKELERLIPVLEAVLTMPEMEGKLVSV--DTF 297 (480)
Q Consensus 233 ~e~a~~~A~~~v~~GAdiIDIG~---------eStrP~----a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI--DT~ 297 (480)
.++..+.|+.+.+.|||.|.+.. .+..|- ....+....+..-...+..+++. .++||.. +=.
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~---~~ipvi~~GGI~ 244 (300)
T TIGR01037 168 VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM---VDIPIIGVGGIT 244 (300)
T ss_pred hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc---CCCCEEEECCCC
Confidence 35678888899999999999731 010110 00112112222222344455544 2455543 445
Q ss_pred CHHHHHHHHHcCCCEEe
Q 038230 298 YSKVASEAVGKGAHIVN 314 (480)
Q Consensus 298 ~~~v~~aaL~~G~~iIN 314 (480)
+++.+++++..|++.+-
T Consensus 245 s~~da~~~l~~GAd~V~ 261 (300)
T TIGR01037 245 SFEDALEFLMAGASAVQ 261 (300)
T ss_pred CHHHHHHHHHcCCCcee
Confidence 66666666666666554
No 407
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=69.64 E-value=34 Score=35.91 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=52.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCHHH
Q 038230 225 SDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYSKV 301 (480)
Q Consensus 225 sdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~~v 301 (480)
-|+++ .+++.+++.+++..+.||+.|-+. -|-- +...+++.++ ++.+++. .++||++ |++--.+
T Consensus 134 ed~~r-~~~~~l~~~~~~~~~~Ga~~i~l~--DT~G----~~~P~~v~~l---v~~l~~~---~~v~l~~H~HNd~GlA~ 200 (365)
T TIGR02660 134 EDASR-ADPDFLVELAEVAAEAGADRFRFA--DTVG----ILDPFSTYEL---VRALRQA---VDLPLEMHAHNDLGMAT 200 (365)
T ss_pred cCCCC-CCHHHHHHHHHHHHHcCcCEEEEc--ccCC----CCCHHHHHHH---HHHHHHh---cCCeEEEEecCCCChHH
Confidence 35555 478999999999999999998665 1221 1223555554 4555655 2678888 4544443
Q ss_pred --HHHHHHcCCCEEec
Q 038230 302 --ASEAVGKGAHIVND 315 (480)
Q Consensus 302 --~~aaL~~G~~iINd 315 (480)
+.+|+++|++.|..
T Consensus 201 ANalaA~~aGa~~vd~ 216 (365)
T TIGR02660 201 ANTLAAVRAGATHVNT 216 (365)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 46788899999863
No 408
>PRK08392 hypothetical protein; Provisional
Probab=69.57 E-value=12 Score=36.11 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCcccccc
Q 038230 273 RLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEE 352 (480)
Q Consensus 273 rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~ 352 (480)
.+..+++.+++. +.++=|-|.++ .. .+++++.++++|+++++-.+--.|..
T Consensus 138 ~~~~i~~~~~~~----g~~lEiNt~~~-------------------~p-~~~~l~~~~~~G~~~~igSDAH~~~~----- 188 (215)
T PRK08392 138 ELKEILDLAEAY----GKAFEISSRYR-------------------VP-DLEFIRECIKRGIKLTFASDAHRPED----- 188 (215)
T ss_pred HHHHHHHHHHHh----CCEEEEeCCCC-------------------CC-CHHHHHHHHHcCCEEEEeCCCCChHH-----
Confidence 334556666665 77777777321 11 46799999999998777443223322
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 038230 353 NLQYDDVCKQVASELYSKVRDAELSGIPAWRIII 386 (480)
Q Consensus 353 ~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Iil 386 (480)
+.. +.+.++.++++|++++++|.
T Consensus 189 ----------vg~-~~~a~~~~~~~g~~~~~~~~ 211 (215)
T PRK08392 189 ----------VGN-VSWSLKVFKKAGGKKEDLLF 211 (215)
T ss_pred ----------CCc-HHHHHHHHHHcCCCHHHeec
Confidence 112 55678888999999888764
No 409
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=69.44 E-value=22 Score=32.77 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=56.1
Q ss_pred chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCcc-Ch---hH
Q 038230 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSK-KA---EH 398 (480)
Q Consensus 323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k-~~---~~ 398 (480)
.+.++++++.|+.++.+|..+.+.. .....+.-.+.+.+.+.+..+.|.+.|+ .|.+-|..+... .. .+
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~----~~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~~~~~~~~~ 146 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSG----PEDDTEENWERLAENLRELAEIAEEYGV---RIALENHPGPFSETPFSVEE 146 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSS----TTSSHHHHHHHHHHHHHHHHHHHHHHTS---EEEEE-SSSSSSSEESSHHH
T ss_pred HHHHHHHHHhCCCceeecCcccccc----cCCCHHHHHHHHHHHHHHHHhhhhhhcc---eEEEecccCccccchhhHHH
Confidence 4678999999999999996411000 0111234566677888999999999999 499999766532 22 67
Q ss_pred HHHHHHhcccCCCcEE
Q 038230 399 NLDILLGLAASHAPIL 414 (480)
Q Consensus 399 ~~~~lr~l~~~g~Pil 414 (480)
..++++.+..+.+-++
T Consensus 147 ~~~~l~~~~~~~~~i~ 162 (213)
T PF01261_consen 147 IYRLLEEVDSPNVGIC 162 (213)
T ss_dssp HHHHHHHHTTTTEEEE
T ss_pred HHHHHhhcCCCcceEE
Confidence 7788887633333333
No 410
>PRK06267 hypothetical protein; Provisional
Probab=69.26 E-value=85 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEE-eCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMID-IGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVA 302 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiID-IG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~ 302 (480)
..+.|++++.|+.+.+.|++.+- .||.. .+ .+|+..+...++.+... ...+|+=-.+.+.+
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~-------~~-~~el~~i~e~I~~~~~~----~~~~s~G~~d~~~~ 123 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYG-------YT-TEEINDIAEMIAYIQGC----KQYLNVGIIDFLNI 123 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC-------CC-HHHHHHHHHHHHHhhCC----ceEeecccCCHHHH
Confidence 45899999999999999998443 34321 12 35677776666655432 23454433444444
No 411
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=69.02 E-value=11 Score=39.83 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
..+.+.++.++++|||+|-|=+- |+- ...++...++..+..++ ++. ++||.. |-..++.++.+++.|+|.
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgr-t~~-q~~~sg~~~p~~l~~~i---~~~----~IPVI~G~V~t~e~A~~~~~aGaDg 212 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGT-LVS-AEHVSTSGEPLNLKEFI---GEL----DVPVIAGGVNDYTTALHLMRTGAAG 212 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEecc-chh-hhccCCCCCHHHHHHHH---HHC----CCCEEEeCCCCHHHHHHHHHcCCCE
Confidence 45778999999999999998541 211 00111111244443333 333 688887 899999999999999999
Q ss_pred Ee
Q 038230 313 VN 314 (480)
Q Consensus 313 IN 314 (480)
|-
T Consensus 213 V~ 214 (369)
T TIGR01304 213 VI 214 (369)
T ss_pred EE
Confidence 87
No 412
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=68.94 E-value=1.2e+02 Score=29.52 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHcCCcCCCCeEEEeCC--C--HHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERL-IPVLEAVLTMPEMEGKLVSVDTF--Y--SKVASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl-~~vi~~l~~~~~~~~~pISIDT~--~--~~v~~aa 305 (480)
.+.++|++.++++ ....+++-||.+- +... ..+|+.|++.+ ++.+|-+|-- + .-+.+.+
T Consensus 13 ~~~~~a~~l~~~l-~~~v~~~kvG~~l-------------~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~v~~~~ 76 (216)
T PRK13306 13 QDLESAIEDAKKV-AEEVDIIEVGTIL-------------LLAEGMKAVRVLRALY--PDKIIVADTKIADAGKILAKMA 76 (216)
T ss_pred CCHHHHHHHHHHc-cccCCEEEEChHH-------------HHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHHHHHHH
Confidence 4678999988875 5567999999521 2222 34566777642 3556666532 1 2333357
Q ss_pred HHcCCCEEecCCCCCCCch----HHHHHHhcCC
Q 038230 306 VGKGAHIVNDVSAGQLDPD----MYKVVAGLKV 334 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~----m~~l~~~~~~ 334 (480)
.++|++++. |-+.. .++ ..+.++++|.
T Consensus 77 ~~~Gad~vT-vH~~a-~~~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 77 FEAGADWVT-VICAA-HIPTIKAALKVAKEFNG 107 (216)
T ss_pred HHCCCCEEE-EeCCC-CHHHHHHHHHHHHHcCC
Confidence 788999998 66544 444 3344455664
No 413
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=68.92 E-value=1.4e+02 Score=30.44 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=95.0
Q ss_pred EEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE
Q 038230 213 VMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV 292 (480)
Q Consensus 213 imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI 292 (480)
=.|-+|+.- .+.+....+.-.+.++-+|=--.+++.. ... .+.+.+.++.+.+. .++||
T Consensus 19 aV~AfN~~n-----------~e~~~avi~AAee~~sPvIiq~~~~~~~---~~g----~~~~~~~~~~~a~~---~~VPV 77 (284)
T PRK12737 19 AVPAFNIHN-----------LETLQVVVETAAELRSPVILAGTPGTFS---YAG----TDYIVAIAEVAARK---YNIPL 77 (284)
T ss_pred eEEEEEeCC-----------HHHHHHHHHHHHHhCCCEEEEcCccHHh---hCC----HHHHHHHHHHHHHH---CCCCE
Confidence 456777764 3444444444445566655433343332 111 33466667777765 36776
Q ss_pred EE--e-CCCHHHHHHHHHcCCC-EEecCCCCCCC------chHHHHHHhcCCCEE--EEcCCCCCCccc-cccccchhhH
Q 038230 293 SV--D-TFYSKVASEAVGKGAH-IVNDVSAGQLD------PDMYKVVAGLKVPYV--AMHMRGDPSTMQ-NEENLQYDDV 359 (480)
Q Consensus 293 SI--D-T~~~~v~~aaL~~G~~-iINdVsg~~~d------~~m~~l~~~~~~~vV--lmh~~g~p~~~~-~~~~~~~~~v 359 (480)
+| | ..+.+.++.|++.|.. +.-|-|...++ .++.++|..+|+.|= +=|..|.-.... ......|.++
T Consensus 78 alHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~p 157 (284)
T PRK12737 78 ALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNP 157 (284)
T ss_pred EEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCH
Confidence 66 6 5568999999999976 44455554433 357888888988765 223332211100 0000112222
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC----cc-ChhHHHHHHHhc-ccCCCcEEE-eec
Q 038230 360 CKQVASELYSKVRDAELSGIPAWRIIIDPGLGF----SK-KAEHNLDILLGL-AASHAPILI-GPS 418 (480)
Q Consensus 360 ~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf----~k-~~~~~~~~lr~l-~~~g~Pil~-G~S 418 (480)
++..+..++-|++ .|=+.+|- -| .+.-++++|++| +..++|+.+ |-|
T Consensus 158 --------eeA~~Fv~~TgvD----~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgS 211 (284)
T PRK12737 158 --------DAAAEFVERTGID----SLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGAS 211 (284)
T ss_pred --------HHHHHHHHHhCCC----EEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCC
Confidence 2333334456886 55555553 22 234568889988 456899865 655
No 414
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=68.76 E-value=1.5e+02 Score=32.85 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGAD-----MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAd-----iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~a 304 (480)
|....++.++.+++.+.|-+ +|=.|| |.. .++ .+..+ ++++.+.+.++ +.+-.-. ....+++
T Consensus 114 ~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG--Tft---~l~-~~y~~---~fl~~~~~a~~--~~~~~~~--~~~~~~~ 180 (522)
T TIGR01211 114 YDPYEQVTARLEQLEQIGHPVDKVELIIMGG--TFP---ARD-LDYQE---WFIKRCLNAMN--GFDQELK--GNSTLEE 180 (522)
T ss_pred CCcHHHHHHHHHHHHHhCCCCceEEEEEECC--Ccc---cCC-HHHHH---HHHHHHHHHhc--ccccccc--ccchHHH
Confidence 35567788888888887743 264554 222 222 23333 44555554321 2111000 0001444
Q ss_pred HHHc----CCCEEe-cCC--CCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 305 AVGK----GAHIVN-DVS--AGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 305 aL~~----G~~iIN-dVs--g~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
+... ...++- +|. ....+++.++..+++|+--|-+-.+..-+...+..+- ... .+...+.++.+.++
T Consensus 181 ~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inR--ght----~~~v~~Ai~~lr~~ 254 (522)
T TIGR01211 181 AIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKR--GHT----VRDVVEATRLLRDA 254 (522)
T ss_pred HHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCC--CCC----HHHHHHHHHHHHHc
Confidence 4332 122221 221 1223577888889999877765433111110100000 001 13445777888999
Q ss_pred CCCCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 378 GIPAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 378 Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
|++ +.+|=.+|. +.+.++..+.++.+
T Consensus 255 G~~---v~~~LM~GLPgqt~e~~~~t~~~l 281 (522)
T TIGR01211 255 GLK---VVYHIMPGLPGSSFERDLEMFREI 281 (522)
T ss_pred CCe---EEEEeecCCCCCCHHHHHHHHHHH
Confidence 994 899987786 56666666666664
No 415
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.51 E-value=19 Score=38.04 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCCHHHHHHHHHcCCCE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~~~v~~aaL~~G~~i 312 (480)
....++++.++++|+|+|-+-+- |++.+ .....-.+..+.. .+++. ++||.. +-..++.++++++.|+|.
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgr-t~~~~-h~~~~~~~~~i~~---~ik~~----~ipVIaG~V~t~e~A~~l~~aGAD~ 211 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGT-VVSAE-HVSKEGEPLNLKE---FIYEL----DVPVIVGGCVTYTTALHLMRTGAAG 211 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEecc-chhhh-ccCCcCCHHHHHH---HHHHC----CCCEEEeCCCCHHHHHHHHHcCCCE
Confidence 45788999999999999999652 21100 0000002333433 33443 688887 899999999999999999
Q ss_pred E
Q 038230 313 V 313 (480)
Q Consensus 313 I 313 (480)
|
T Consensus 212 V 212 (368)
T PRK08649 212 V 212 (368)
T ss_pred E
Confidence 8
No 416
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.49 E-value=25 Score=37.98 Aligned_cols=71 Identities=28% Similarity=0.341 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCEEEeCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCC
Q 038230 238 SQVRLMISEGADMIDIGAQS-----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGA 310 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eS-----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~ 310 (480)
+.|+.++++|||+|++|..+ |+... .+.. -.+.-+..+.+..++. ++||--|- .++.-+..||.+||
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~-~~g~-p~~~~i~~~~~~~~~~----~vpviadGGi~~~~di~kAla~GA 350 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVA-GVGV-PQITAVYDVAEYAAQS----GIPVIADGGIRYSGDIVKALAAGA 350 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceec-CCCc-cHHHHHHHHHHHHhhc----CCeEEEeCCCCCHHHHHHHHHcCC
Confidence 35677888999999988321 22110 0100 1223333333334432 78887764 78888889999998
Q ss_pred CEEe
Q 038230 311 HIVN 314 (480)
Q Consensus 311 ~iIN 314 (480)
+.+-
T Consensus 351 ~~V~ 354 (450)
T TIGR01302 351 DAVM 354 (450)
T ss_pred CEEE
Confidence 8774
No 417
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.48 E-value=95 Score=31.54 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC--------chHHHHHHhcCCCEEEEcC
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD--------PDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d--------~~m~~l~~~~~~~vVlmh~ 341 (480)
+..+++..++. --..-..+.++.+.+++.+++ +.++|-.++....+ +-+...++++.+||++--+
T Consensus 6 ~~~~l~~A~~~---~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlD 82 (281)
T PRK06806 6 MKELLKKANQE---NYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFD 82 (281)
T ss_pred HHHHHHHHHHC---CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECC
Confidence 34455555554 135688999999988887775 88888888764321 1345567778999887433
Q ss_pred CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 342 ~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
.|.. .+.++.|.+.|++ -|-+|- -..+.++|+++-+++ +..|.|+
T Consensus 83 H~~~----------------------~e~i~~Al~~G~t--sVm~d~---s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 83 HGMT----------------------FEKIKEALEIGFT--SVMFDG---SHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CCCC----------------------HHHHHHHHHcCCC--EEEEcC---CCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4321 1455667788987 777882 334567777777666 3457775
No 418
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=68.05 E-value=24 Score=37.14 Aligned_cols=113 Identities=18% Similarity=0.136 Sum_probs=65.6
Q ss_pred EEEE-EecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 213 VMGI-LNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 213 imGI-lN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
.+|+ || |+-+.+++-..+.++.++.++.+. ++.|+|++.+.+....... ....+-....+..+.+++. .++|
T Consensus 219 ~v~vRls--~~~~~~~~g~~~~~e~~~~~~~l~-~~~D~i~vs~g~~~~~~~~-~~~~~~~~~~~~~~~ik~~---~~~p 291 (370)
T cd02929 219 AVATRFS--VDELIGPGGIESEGEGVEFVEMLD-ELPDLWDVNVGDWANDGED-SRFYPEGHQEPYIKFVKQV---TSKP 291 (370)
T ss_pred eEEEEec--HHHhcCCCCCCCHHHHHHHHHHHH-hhCCEEEecCCCccccccc-cccCCccccHHHHHHHHHH---CCCC
Confidence 4554 44 444433332357888888887764 4589999986543211000 0000001123445556655 3556
Q ss_pred EE-E-eCCCHHHHHHHHHcC-CCEEecCCCCCCCchHHHHHHhc
Q 038230 292 VS-V-DTFYSKVASEAVGKG-AHIVNDVSAGQLDPDMYKVVAGL 332 (480)
Q Consensus 292 IS-I-DT~~~~v~~aaL~~G-~~iINdVsg~~~d~~m~~l~~~~ 332 (480)
|. . +-..++.++++++.| +|+|-=-.+.-.||.+..-+++-
T Consensus 292 vi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 335 (370)
T cd02929 292 VVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREG 335 (370)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcC
Confidence 54 3 445799999999986 88886555555578887777764
No 419
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=68.03 E-value=1.1e+02 Score=28.78 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=47.2
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD 295 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID 295 (480)
++=+||+.+.++ +...+.+++.++.|++.|-+-..+ .+ ..|+......++.+... .++++-++
T Consensus 9 ~~~it~~~~~~~------~~~~~~~~~~~~~gv~~v~lr~~~-------~~-~~~~~~~~~~~~~~~~~---~~~~l~~~ 71 (212)
T PRK00043 9 LYLITDSRDDSG------RDLLEVVEAALEGGVTLVQLREKG-------LD-TRERLELARALKELCRR---YGVPLIVN 71 (212)
T ss_pred EEEEECCccccc------ccHHHHHHHHHhcCCCEEEEeCCC-------CC-HHHHHHHHHHHHHHHHH---hCCeEEEe
Confidence 444577655533 245667888899999999775421 11 23333333334444332 37778776
Q ss_pred CCCHHHHHHHHHcCCCEEe
Q 038230 296 TFYSKVASEAVGKGAHIVN 314 (480)
Q Consensus 296 T~~~~v~~aaL~~G~~iIN 314 (480)
. -++.++++|++.+-
T Consensus 72 ~----~~~~a~~~gad~vh 86 (212)
T PRK00043 72 D----RVDLALAVGADGVH 86 (212)
T ss_pred C----hHHHHHHcCCCEEe
Confidence 3 46778888999775
No 420
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=67.90 E-value=32 Score=38.75 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=57.7
Q ss_pred cEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC
Q 038230 211 TSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK 290 (480)
Q Consensus 211 ~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~ 290 (480)
....|.|-.|= +...+.+..++.|+++.+.|||.|-|-=. . ....+ ++... .+++|++. .++
T Consensus 137 ~~~~~~i~yt~------sp~~t~e~~~~~ak~l~~~Gad~I~IkDt--a---G~l~P-~~v~~---lv~alk~~---~~i 198 (596)
T PRK14042 137 KHAQGAICYTT------SPVHTLDNFLELGKKLAEMGCDSIAIKDM--A---GLLTP-TVTVE---LYAGLKQA---TGL 198 (596)
T ss_pred CEEEEEEEecC------CCCCCHHHHHHHHHHHHHcCCCEEEeCCc--c---cCCCH-HHHHH---HHHHHHhh---cCC
Confidence 35666554442 22678999999999999999999988621 1 11122 34444 45666665 378
Q ss_pred eEEEe---CCCH--HHHHHHHHcCCCEEec
Q 038230 291 LVSVD---TFYS--KVASEAVGKGAHIVND 315 (480)
Q Consensus 291 pISID---T~~~--~v~~aaL~~G~~iINd 315 (480)
||.+= |+-- ....+|+++|+++|..
T Consensus 199 pi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 199 PVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 99994 4433 4456889999999864
No 421
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=67.86 E-value=31 Score=38.83 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCC--HHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFY--SKVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~--~~v~~a 304 (480)
+.+.+..++.|+++.+.|||.|-|.= |.-. .. .+++.. +++.+++.. ++||.+ ||+- .....+
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~D--t~G~---~~-P~~~~~---lv~~lk~~~---~~pi~~H~Hnt~Gla~An~la 217 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKD--MAGL---LT-PYAAYE---LVKALKEEV---DLPVQLHSHCTSGLAPMTYLK 217 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--cCCC---cC-HHHHHH---HHHHHHHhC---CCeEEEEEcCCCCcHHHHHHH
Confidence 46899999999999999999998862 1111 11 244544 456666653 689999 4433 345568
Q ss_pred HHHcCCCEEec
Q 038230 305 AVGKGAHIVND 315 (480)
Q Consensus 305 aL~~G~~iINd 315 (480)
|+++|+++|..
T Consensus 218 Av~aGad~vD~ 228 (592)
T PRK09282 218 AVEAGVDIIDT 228 (592)
T ss_pred HHHhCCCEEEe
Confidence 89999999864
No 422
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=67.74 E-value=21 Score=39.67 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC---EEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-----eCCCH--
Q 038230 230 FQSVEAAVSQVRLMISEGAD---MIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV-----DTFYS-- 299 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAd---iIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-----DT~~~-- 299 (480)
..+.-+-++.|+++.++||| ++||-+. +.+. ++-+.+..+|+.+.+. ..+|+.+ +.-++
T Consensus 263 ~~~~gdPve~a~~y~~~Gadel~~~Di~~~--~~~~------~~~~~~~~~i~~i~~~---~~ip~~vGGGIr~~~d~~~ 331 (538)
T PLN02617 263 VRNLGKPVELAGQYYKDGADEVAFLNITGF--RDFP------LGDLPMLEVLRRASEN---VFVPLTVGGGIRDFTDANG 331 (538)
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCCC--cCCc------ccchhHHHHHHHHHhh---CCCCEEEcCCccccccccc
Confidence 44556788999999999996 7788762 2111 1223355677777776 4788887 33333
Q ss_pred ------HHHHHHHHcCCC--EEecCCCC----------CCCch-HHHHHHhcCCC
Q 038230 300 ------KVASEAVGKGAH--IVNDVSAG----------QLDPD-MYKVVAGLKVP 335 (480)
Q Consensus 300 ------~v~~aaL~~G~~--iINdVsg~----------~~d~~-m~~l~~~~~~~ 335 (480)
+.+++.|++||+ +||+.--. ..+|+ +-+++++||-.
T Consensus 332 ~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q 386 (538)
T PLN02617 332 RYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ 386 (538)
T ss_pred cccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCc
Confidence 889999999988 66653211 11245 45566678755
No 423
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.45 E-value=15 Score=38.23 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTM 284 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~ 284 (480)
+.++..+.+++. +.+||.|++|..+... +... .+..+.+..+++++++.
T Consensus 155 ~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 155 AVDDYLICLEKL-YPYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEA 204 (344)
T ss_pred CHHHHHHHHHHH-HhhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHH
Confidence 456777777775 5589999999754332 2111 23334455666666654
No 424
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=67.43 E-value=4.9 Score=37.77 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=59.6
Q ss_pred eeEEEEeCCCcccHHH-------HHHHHHHHHHhcCCcEEEeeCcEE---eCCCCCCCCccceeeeeeeccCCCHHHHHH
Q 038230 44 QEVVIAMGSNVGDRLC-------NFNEALQLMKKLGVNITRHGCLYE---TEPAYVTDQPRFLNSAVRGVTKLGPHELLG 113 (480)
Q Consensus 44 ~~~~l~LGSN~gd~~~-------~i~~A~~~L~~~~~~i~~~S~~y~---T~P~g~~~q~~F~N~v~~~~T~l~p~~Ll~ 113 (480)
...+|++.=|+..+.+ -|..+++.|...+.. ..+...++ ..|-|+. ..+-++.+|.++.+
T Consensus 27 ~~~lis~tlNiPG~iK~~~~~~~~f~~~~~~l~~~l~~-~~~~~~~~~~~~~~tGpe---------~~~~v~~~a~~vK~ 96 (170)
T PF03802_consen 27 GAPLISFTLNIPGPIKNNPLIRRIFDEGIEALEQQLSA-NGIFKLEQEILNDPTGPE---------AFLVVDGDAEEVKR 96 (170)
T ss_pred CCcEEEEEEEccccccCCHHHHHHHHHHHHHHHHHHHH-cCCeEeeeeeeecCCcce---------eeEEeCCCHHHHHH
Confidence 4688999999954444 466666766665221 12222221 3444542 23456677999999
Q ss_pred HHHHHHHHc--CCCCCCCCCCCccchhhcccCCeeeeCCCcccc
Q 038230 114 VLKKIEKDM--GRTNGIRHGPRPIDLDILFYGRFSIHSDTLTVP 155 (480)
Q Consensus 114 ~lk~IE~~~--GR~r~~~~~~r~iDiDIl~~~~~~~~~~~l~iP 155 (480)
.+-.||... | |-+|||++.-++..+.=.+|-+|
T Consensus 97 ~~i~iEe~hplG---------RL~DiDV~~~~g~~iSR~~lg~~ 131 (170)
T PF03802_consen 97 IMIEIEESHPLG---------RLFDIDVLDPDGKQISREDLGLP 131 (170)
T ss_pred HHHHHHccCcch---------heEEEeeecCCCCccCHHHcCCC
Confidence 999999764 7 99999999666666654444444
No 425
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=67.32 E-value=90 Score=33.40 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=72.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCCCCCC--HHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTR-PMATKIS--AEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASE 304 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr-P~a~~v~--~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~a 304 (480)
+..+++.+++.++.+++.|+.-|-+-++.+. -|.+... ...+ +..+++.+.+. .++ .+.+-|.+|.
T Consensus 154 ~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~---l~~Ll~~l~~~---~g~~~ir~~s~~p~---- 223 (420)
T PRK14339 154 ISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVD---FSDLLDKLSEI---EGLERIRFTSPHPL---- 223 (420)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCccccc---HHHHHHHHhcC---CCccEEEECCCChh----
Confidence 4468999999999999999988766544332 1111000 0112 33344444432 122 2343333321
Q ss_pred HHHcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC-
Q 038230 305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS- 377 (480)
Q Consensus 305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~- 377 (480)
..+++++++.++.+ |..+-+..+ |.+. .|.+. |. .+.+.+.++.+.++
T Consensus 224 ---------------~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~----~t------~~~~~~~v~~lr~~~ 278 (420)
T PRK14339 224 ---------------HMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRG----YT------KEWFLNRAEKLRALV 278 (420)
T ss_pred ---------------hcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCC----CC------HHHHHHHHHHHHHHC
Confidence 12578888888863 666655543 2222 22221 11 13455677777776
Q ss_pred -CCCCCCEEEecCCCC-ccChhHHHHHHH
Q 038230 378 -GIPAWRIIIDPGLGF-SKKAEHNLDILL 404 (480)
Q Consensus 378 -Gi~~~~IilDPgiGf-~k~~~~~~~~lr 404 (480)
|+ .|-.|=.+|| +.+.++-.++++
T Consensus 279 p~i---~i~~d~IvGfPgETeedf~~Tl~ 304 (420)
T PRK14339 279 PEV---SISTDIIVGFPGESDKDFEDTMD 304 (420)
T ss_pred CCC---EEEEEEEEECCCCCHHHHHHHHH
Confidence 44 3667777787 555544333333
No 426
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=67.31 E-value=1.1e+02 Score=30.38 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~ 310 (480)
.++..+...+......|+|++=||.-.+. +.++-++.+..+++.+++.. .+..+.-.-| +-.
T Consensus 64 ~~p~~~~~aa~~~a~~GvdyvKvGl~g~~------~~~~a~e~l~~v~~av~~~~--~~~~vVAv~y----------AD~ 125 (235)
T PF04476_consen 64 MKPGTASLAALGAAATGVDYVKVGLFGCK------DYDEAIEALEAVVRAVKDFD--PDKKVVAVGY----------ADA 125 (235)
T ss_pred CCchHHHHHHHHHHhcCCCEEEEecCCCC------CHHHHHHHHHHHHHHHhhhC--CCcEEEEEEe----------cch
Confidence 34566777788888999999999974322 23455677777777777642 1222211111 011
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCC-CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRG-DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg 389 (480)
.-+|+++ .-++.+++++.|+..+++.+-. .-.+.-+. -+ .+.|.+-++.+.++|+.
T Consensus 126 ~r~~~~~----p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~-----~~-----~~~L~~Fv~~ar~~gL~--------- 182 (235)
T PF04476_consen 126 QRVGSIS----PLDLPEIAAEAGFDGVMLDTADKDGGSLFDH-----LS-----EEELAEFVAQARAHGLM--------- 182 (235)
T ss_pred hhhcCCC----HHHHHHHHHHcCCCEEEEecccCCCCchhhc-----CC-----HHHHHHHHHHHHHccch---------
Confidence 1233333 2467889999999999887621 11111111 11 14566778888999984
Q ss_pred CCCccCh-hHHHHHHHhc
Q 038230 390 LGFSKKA-EHNLDILLGL 406 (480)
Q Consensus 390 iGf~k~~-~~~~~~lr~l 406 (480)
.|.+-+. .+.+..|+.+
T Consensus 183 ~aLAGSL~~~di~~L~~l 200 (235)
T PF04476_consen 183 CALAGSLRFEDIPRLKRL 200 (235)
T ss_pred hhccccCChhHHHHHHhc
Confidence 5664433 4457777765
No 427
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=67.14 E-value=1.6e+02 Score=30.94 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-------EEEeCCCCCCCCC--------C----CCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 231 QSVEAAVSQVRLMISEGAD-------MIDIGAQSTRPMA--------T----KISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAd-------iIDIG~eStrP~a--------~----~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
-|++.+++-|+++.+.|+. ++=+|++--|... . .-.-++=+..+..+.-.+.+. ++|
T Consensus 59 hd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~i~~~----GlP 134 (344)
T TIGR00034 59 HDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLDLVNL----GLP 134 (344)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHHHHHh----CCC
Confidence 4688999999999999997 8888887544321 0 112234455555555445554 788
Q ss_pred EEE---eCCCHHHHHHHHH---cCCC-------------------EEecCCCCCCCchHHHH--HHhc----------CC
Q 038230 292 VSV---DTFYSKVASEAVG---KGAH-------------------IVNDVSAGQLDPDMYKV--VAGL----------KV 334 (480)
Q Consensus 292 ISI---DT~~~~v~~aaL~---~G~~-------------------iINdVsg~~~d~~m~~l--~~~~----------~~ 334 (480)
+.- |+..|+.+...+. .||. +-|..+|.- ...+.. ++++ |.
T Consensus 135 vatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKngt~g~i--~~al~Ai~aA~~~H~fl~~~~~G~ 212 (344)
T TIGR00034 135 IAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNL--QVAIDAIRAAAAPHYFLSVTKDGQ 212 (344)
T ss_pred eEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCCCCCCH--HHHHHHHHHHhCCceeeecCCCCc
Confidence 765 5555666555552 2333 333333211 222222 2331 22
Q ss_pred CEEEEcCCCCCCcc-----ccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCC-ccChhHHHHHHHhc--
Q 038230 335 PYVAMHMRGDPSTM-----QNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGF-SKKAEHNLDILLGL-- 406 (480)
Q Consensus 335 ~vVlmh~~g~p~~~-----~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l-- 406 (480)
.. ++.+.|.|... .+.++|.+. .+......+++.|++ .+|++||..|- .|+...-+.+.+.+
T Consensus 213 ~~-~i~t~GN~~~hlilRGg~~pNy~~~--------di~~~~~~l~~~~lp-~~vmVD~SH~ns~k~~~~q~~va~~v~~ 282 (344)
T TIGR00034 213 MA-IVQTSGNPDGHIILRGGKKPNYSAA--------DVAAAKKQLEKAGLP-PHLMIDFSHGNSNKDHRRQPDVAEDVCE 282 (344)
T ss_pred EE-EEECCCCCCEEEEecCCCCCCCCHH--------HHHHHHHHHHHcCCC-CeEEEeCCCcccccchhhhHHHHHHHHH
Confidence 22 22344555322 011344432 334555666778997 68999998875 45554334444432
Q ss_pred -ccCCCcEEEeecccccc
Q 038230 407 -AASHAPILIGPSRKRFL 423 (480)
Q Consensus 407 -~~~g~Pil~G~SrKsfi 423 (480)
..-|-.-+.|+=--||+
T Consensus 283 qi~~G~~~I~GvMiES~l 300 (344)
T TIGR00034 283 QIANGSKAIIGVMIESNL 300 (344)
T ss_pred HHHcCCccceEEEEEecC
Confidence 11233335566555554
No 428
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=67.11 E-value=1.3e+02 Score=29.46 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS 317 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs 317 (480)
+...++.+.|.+-+.+-+...+.....--..++++.+...+ .+. ++++|+ .+.-.+|-.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~---~~~----gl~ls~-------------h~p~~~nl~s 73 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEAL---KEN----NIDVSV-------------HAPYLINLAS 73 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH---HHc----CCCEEE-------------ECCceecCCC
Q ss_pred CCCCCch--------HHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230 318 AGQLDPD--------MYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389 (480)
Q Consensus 318 g~~~d~~--------m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg 389 (480)
.....-+ .+++|++.|+++|++|....+....+ +..+...+.+.+..+. +.|+. |.+-+-
T Consensus 74 ~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e-------~~~~~~~~~l~~l~~~--~~gv~---l~lEn~ 141 (273)
T smart00518 74 PDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKE-------EALNRIIESLNEVIDE--TKGVV---ILLETT 141 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHH-------HHHHHHHHHHHHHHhc--cCCcE---EEEecc
Q ss_pred CC----CccChhHHHHHHHhccc-CCCcEEE
Q 038230 390 LG----FSKKAEHNLDILLGLAA-SHAPILI 415 (480)
Q Consensus 390 iG----f~k~~~~~~~~lr~l~~-~g~Pil~ 415 (480)
.+ ++.+..+-.++++.+.. +++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~l 172 (273)
T smart00518 142 AGKGSQIGSTFEDLKEIIDLIKELDRIGVCI 172 (273)
T ss_pred CCCCCccCCCHHHHHHHHHhcCCCCCeEEEE
No 429
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=67.08 E-value=1.5e+02 Score=30.01 Aligned_cols=102 Identities=16% Similarity=0.263 Sum_probs=63.7
Q ss_pred CCcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC
Q 038230 209 LKTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM 287 (480)
Q Consensus 209 ~~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~ 287 (480)
.++.|++=+-.+ | |.+.|++++.|.++++ .||+-+=|=+. ..+.+.|+.+.+.
T Consensus 75 ~~~~vv~DmPf~--s------y~~~e~a~~na~rl~~eaGa~aVkiEgg---------------~~~~~~i~~l~~~--- 128 (263)
T TIGR00222 75 PNCLIVTDLPFM--S------YATPEQALKNAARVMQETGANAVKLEGG---------------EWLVETVQMLTER--- 128 (263)
T ss_pred CCceEEeCCCcC--C------CCCHHHHHHHHHHHHHHhCCeEEEEcCc---------------HhHHHHHHHHHHC---
Confidence 356666644444 1 4468999999999888 89999988541 2244566777775
Q ss_pred CCCeEE-----------EeC-C-----CHHHHHHHH-------HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230 288 EGKLVS-----------VDT-F-----YSKVASEAV-------GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 288 ~~~pIS-----------IDT-~-----~~~v~~aaL-------~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm 339 (480)
++|+. .|. | ..+.+++++ ++|++.|- +-+-. .+..-.+.++..+|++-+
T Consensus 129 -gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~iv-lE~vp-~~~a~~It~~l~iP~iGI 201 (263)
T TIGR00222 129 -GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLV-LECVP-VELAAKITEALAIPVIGI 201 (263)
T ss_pred -CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEE-EcCCc-HHHHHHHHHhCCCCEEee
Confidence 77777 343 2 233333332 35999886 44333 244555666778888744
No 430
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=66.86 E-value=1e+02 Score=28.14 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHc-CCcCCCCeEEEeCCC--------HHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLT-MPEMEGKLVSVDTFY--------SKVA 302 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~-~~~~~~~pISIDT~~--------~~v~ 302 (480)
+.+...+.++.+++.|++-|-+++ +.+..+.+.... . ..+.+.+.+.. .+.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----------------~~i~~~~~~~~~~~---~~v~~~v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----------------GYVRLAADALAGSD---VPVIVVVGFPTGLTTTEVKVAEV 71 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----------------HHHHHHHHHhCCCC---CeEEEEecCCCCCCcHHHHHHHH
Confidence 888999999999999999999986 111122233332 1 12335566664 2445
Q ss_pred HHHHHcCCCEEecC
Q 038230 303 SEAVGKGAHIVNDV 316 (480)
Q Consensus 303 ~aaL~~G~~iINdV 316 (480)
+.|.++|++.+.-.
T Consensus 72 ~~a~~~Gad~i~v~ 85 (201)
T cd00945 72 EEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHcCCCEEEEe
Confidence 66777799988744
No 431
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=66.78 E-value=1e+02 Score=30.88 Aligned_cols=88 Identities=16% Similarity=0.272 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-----------EeC-C
Q 038230 231 QSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-----------VDT-F 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-----------IDT-~ 297 (480)
.+++++++++.++++ .||+-|=|=+. + .+.+.|+.+.+. ++|++ .+. |
T Consensus 87 ~~~~~av~~a~r~~~~aGa~aVkiEd~------------~---~~~~~I~al~~a----gipV~gHiGL~pq~~~~~gg~ 147 (254)
T cd06557 87 TSPEQALRNAARLMKEAGADAVKLEGG------------A---EVAETIRALVDA----GIPVMGHIGLTPQSVNQLGGY 147 (254)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcCc------------H---HHHHHHHHHHHc----CCCeeccccccceeeeccCCc
Confidence 469999999998888 99999988431 1 344567777765 67766 221 1
Q ss_pred -----CH----HHHHHHH---HcCCCEEecCCCCCCCchHHHHHHhcCCCEEEE
Q 038230 298 -----YS----KVASEAV---GKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAM 339 (480)
Q Consensus 298 -----~~----~v~~aaL---~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlm 339 (480)
.. +.++.|. ++|+++|- +-+-. .+.+..+.++..+|+|-+
T Consensus 148 ~~~grt~~~a~~~i~ra~a~~~AGA~~i~-lE~v~-~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 148 KVQGKTEEEAERLLEDALALEEAGAFALV-LECVP-AELAKEITEALSIPTIGI 199 (254)
T ss_pred eeccCCHHHHHHHHHHHHHHHHCCCCEEE-EcCCC-HHHHHHHHHhCCCCEEEe
Confidence 23 2333332 35999886 44443 356777777788888855
No 432
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=66.77 E-value=1.1e+02 Score=29.60 Aligned_cols=85 Identities=25% Similarity=0.312 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCC
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVS 317 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVs 317 (480)
++++..++.||++|-.+... .|+ ++..+.. +.++.+-..+++.+.+|.+.|+|+|--.-
T Consensus 74 ~~~~~a~~aGA~fivsp~~~-----------~~v------~~~~~~~----~~~~~~G~~t~~E~~~A~~~Gad~vk~Fp 132 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPNTD-----------PEV------IRRAVAL----GMVVMPGVATPTEAFAALRAGAQALKLFP 132 (206)
T ss_pred HHHHHHHHcCCCEEECCCCC-----------HHH------HHHHHHC----CCcEEcccCCHHHHHHHHHcCCCEEEECC
Confidence 36788889999999987521 222 2333433 77888889999999999999999997322
Q ss_pred CCCCCchHHHHHHh-c--CCCEEEEcCCCCC
Q 038230 318 AGQLDPDMYKVVAG-L--KVPYVAMHMRGDP 345 (480)
Q Consensus 318 g~~~d~~m~~l~~~-~--~~~vVlmh~~g~p 345 (480)
....-++.++.+++ + ++++|. ..|+.
T Consensus 133 a~~~G~~~l~~l~~~~~~~ipvva--iGGI~ 161 (206)
T PRK09140 133 ASQLGPAGIKALRAVLPPDVPVFA--VGGVT 161 (206)
T ss_pred CCCCCHHHHHHHHhhcCCCCeEEE--ECCCC
Confidence 22122455554444 3 366654 44653
No 433
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.53 E-value=1.7e+02 Score=31.59 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=77.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK 308 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~ 308 (480)
+..+++++++.++.+.+.|+.-|-+-++.+.-... . .. .+..+++.+.+... ...|.+=+.+|.
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~--~-~~---~l~~Ll~~l~~~~~--~~~ir~~~~~p~-------- 244 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE--Q-ST---DFAGLIQMLLDETT--IERIRFTSPHPK-------- 244 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC--C-cc---cHHHHHHHHhcCCC--cceEEEECCCcc--------
Confidence 55789999999999999999988665443321111 1 01 23334444443210 112333233331
Q ss_pred CCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--CCC
Q 038230 309 GAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS--GIP 380 (480)
Q Consensus 309 G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--Gi~ 380 (480)
..+++++++.++.+ |..+-+..+ |.+. .|.+. |. .+.+.+.++.+.++ |+
T Consensus 245 -----------~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~----~t------~~~~~~~i~~lr~~~p~i- 302 (449)
T PRK14332 245 -----------DFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRS----YS------KEEFLDVVKEIRNIVPDV- 302 (449)
T ss_pred -----------cCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCC----CC------HHHHHHHHHHHHHhCCCC-
Confidence 12467888888877 666665543 2222 22221 10 13445677777766 34
Q ss_pred CCCEEEecCCCC-ccChhHHHHHHHhcccCCCc
Q 038230 381 AWRIIIDPGLGF-SKKAEHNLDILLGLAASHAP 412 (480)
Q Consensus 381 ~~~IilDPgiGf-~k~~~~~~~~lr~l~~~g~P 412 (480)
.|-.|=-+|| +.+.++-.++++-++..++.
T Consensus 303 --~i~td~IvGfPgET~edf~~tl~~v~~l~~~ 333 (449)
T PRK14332 303 --GITTDIIVGFPNETEEEFEDTLAVVREVQFD 333 (449)
T ss_pred --EEEEEEEeeCCCCCHHHHHHHHHHHHhCCCC
Confidence 3557777788 66665544444444333433
No 434
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=66.48 E-value=1.5e+02 Score=29.74 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=66.4
Q ss_pred ecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE-Ee-
Q 038230 218 NLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS-VD- 295 (480)
Q Consensus 218 N~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS-ID- 295 (480)
-+-+-|-|.|-...+ -+..+.|+.+.+.||..|-|-.+.+.=+ -|. +.+..+...+ ++||- =|
T Consensus 46 EiKr~SPs~G~i~~~-~d~~~~A~~y~~~GA~aISVlTe~~~F~---Gs~-~~l~~v~~~v----------~~PvL~KDF 110 (247)
T PRK13957 46 ECKRKSPSAGELRAD-YHPVQIAKTYETLGASAISVLTDQSYFG---GSL-EDLKSVSSEL----------KIPVLRKDF 110 (247)
T ss_pred EEecCCCCCCCcCCC-CCHHHHHHHHHHCCCcEEEEEcCCCcCC---CCH-HHHHHHHHhc----------CCCEEeccc
Confidence 334444455543322 2466899999999999999986544322 222 3344332221 33422 22
Q ss_pred CCCHHHHHHHHHcCCCEEecCCCCCCC---chHHHHHHhcCCCEEE-EcC
Q 038230 296 TFYSKVASEAVGKGAHIVNDVSAGQLD---PDMYKVVAGLKVPYVA-MHM 341 (480)
Q Consensus 296 T~~~~v~~aaL~~G~~iINdVsg~~~d---~~m~~l~~~~~~~vVl-mh~ 341 (480)
-.++.-+.+|...|||.|.-+-....+ .+++..+.+.|..+++ .|+
T Consensus 111 Iid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~ 160 (247)
T PRK13957 111 ILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHT 160 (247)
T ss_pred cCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECC
Confidence 246777888888999988777664422 4588888889976664 564
No 435
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=66.24 E-value=1.3e+02 Score=29.88 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCC
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAH 311 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~ 311 (480)
+.++++++..+|.+.|-.-+=+-|.|+.-|.-| +.+....++++++.. ++
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VP------l~kf~d~lK~lke~~---~l--------------------- 89 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVP------LWKFKDELKALKERT---GL--------------------- 89 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCcc------HHHHHHHHHHHHHhh---Ce---------------------
Confidence 347889999999999998777777666655433 456666777777651 22
Q ss_pred EEecCCCCCCCchHHHHHHhcCCCEEEEcCCCC
Q 038230 312 IVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGD 344 (480)
Q Consensus 312 iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~ 344 (480)
.||-=.|+. +++.++..|+.++.+|.|..-|+
T Consensus 90 ~inaHvGfv-dE~~~eklk~~~vdvvsLDfvgD 121 (275)
T COG1856 90 LINAHVGFV-DESDLEKLKEELVDVVSLDFVGD 121 (275)
T ss_pred EEEEEeeec-cHHHHHHHHHhcCcEEEEeecCC
Confidence 344344554 57778888888888888876543
No 436
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=65.67 E-value=1.5e+02 Score=30.47 Aligned_cols=28 Identities=14% Similarity=-0.010 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEe-CCCC
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDI-GAQS 257 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDI-G~eS 257 (480)
..++|++++.++++.+.|+.-+.+ ||++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~ 68 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEV 68 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 689999999999999999998777 4443
No 437
>PRK06801 hypothetical protein; Provisional
Probab=65.55 E-value=1.1e+02 Score=31.26 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC----c----hHHHHHHhcCCCEEEEcC
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD----P----DMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d----~----~m~~l~~~~~~~vVlmh~ 341 (480)
+..+++..++.. -..-+...++.+.+++.+++ ++++|-.++..... + -+..++.++.+||++--+
T Consensus 6 ~~~~l~~A~~~~---yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlD 82 (286)
T PRK06801 6 LANGLAHARKHG---YALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLD 82 (286)
T ss_pred HHHHHHHHHHCC---ceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 444555555541 35688999999988888875 88888878764321 2 244556678999887444
Q ss_pred CCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 342 RGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 342 ~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
.|.. .+.++.|.+.|++ -|-+| |-.-+.++|++.-+++ +..|+++
T Consensus 83 H~~~----------------------~e~i~~Ai~~Gft--SVm~D---~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 83 HGLH----------------------FEAVVRALRLGFS--SVMFD---GSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred CCCC----------------------HHHHHHHHHhCCc--EEEEc---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4321 1446677889997 88888 2333457787777665 3456665
No 438
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=65.51 E-value=77 Score=30.48 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=45.6
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC----------------HHHH
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY----------------SKVA 302 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~----------------~~v~ 302 (480)
.++++.+.||+.+=+|...- +..+.+..+++... ..+.+|||..+ .+.+
T Consensus 88 d~~~~~~~Ga~~vilg~~~l----------~~~~~l~ei~~~~~-----~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~ 152 (233)
T PRK00748 88 TVEALLDAGVSRVIIGTAAV----------KNPELVKEACKKFP-----GKIVVGLDARDGKVATDGWLETSGVTAEDLA 152 (233)
T ss_pred HHHHHHHcCCCEEEECchHH----------hCHHHHHHHHHHhC-----CCceeeeeccCCEEEEccCeecCCCCHHHHH
Confidence 45677778999999986321 11223334444442 24788999642 3444
Q ss_pred HHHHHcCCC--EEecCCCCC----CCch-HHHHHHhcCCCEEE
Q 038230 303 SEAVGKGAH--IVNDVSAGQ----LDPD-MYKVVAGLKVPYVA 338 (480)
Q Consensus 303 ~aaL~~G~~--iINdVsg~~----~d~~-m~~l~~~~~~~vVl 338 (480)
++..+.|++ ++.|++... .+-+ +-++++..+.|++.
T Consensus 153 ~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia 195 (233)
T PRK00748 153 KRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA 195 (233)
T ss_pred HHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 444445777 666665311 1223 34444445667665
No 439
>PRK15452 putative protease; Provisional
Probab=65.39 E-value=1.4e+02 Score=32.46 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCEEEeCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC-HHH-------HHHHHH
Q 038230 238 SQVRLMISEGADMIDIGAQ--STRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-SKV-------ASEAVG 307 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~e--StrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-~~v-------~~aaL~ 307 (480)
++++..+++|||-|=+|++ +.|..+...+. +|++ ..++..++.. ..+-+.+-+.- .+. ++...+
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl~---eav~~ah~~g--~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENLA---LGINEAHALG--KKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHHH---HHHHHHHHcC--CEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 4567778999999999986 34443444554 4444 4555556541 13334433322 222 344445
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhc--CCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGL--KVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRII 385 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~--~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~Ii 385 (480)
.|+|=|- | .|..++.+++++ +.++.+-..-.+- + ...++.+.+.|+. +++
T Consensus 88 ~gvDgvI-V----~d~G~l~~~ke~~p~l~ih~stqlni~-------N--------------~~a~~f~~~lG~~--rvv 139 (443)
T PRK15452 88 MKPDALI-M----SDPGLIMMVREHFPEMPIHLSVQANAV-------N--------------WATVKFWQQMGLT--RVI 139 (443)
T ss_pred CCCCEEE-E----cCHHHHHHHHHhCCCCeEEEEecccCC-------C--------------HHHHHHHHHCCCc--EEE
Confidence 5777432 2 267889999986 5666653322111 0 1334455677876 788
Q ss_pred EecCC
Q 038230 386 IDPGL 390 (480)
Q Consensus 386 lDPgi 390 (480)
+-+=+
T Consensus 140 LSrEL 144 (443)
T PRK15452 140 LSREL 144 (443)
T ss_pred ECCcC
Confidence 77733
No 440
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=65.18 E-value=1.1e+02 Score=31.25 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC-----ch---H-HHHHHhcC--CCEEE
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD-----PD---M-YKVVAGLK--VPYVA 338 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d-----~~---m-~~l~~~~~--~~vVl 338 (480)
+..+++..++.. -..-+.+.++.+.+++.+++ +.++|-.++-.... +. | ..++.++. +||++
T Consensus 6 ~k~lL~~A~~~~---yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~l 82 (286)
T PRK08610 6 MKEMLIDAKENG---YAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAI 82 (286)
T ss_pred HHHHHHHHHHCC---ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEE
Confidence 334455555541 24459999999998888875 89998888653211 11 2 23444566 57766
Q ss_pred EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 339 MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 339 mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
--+.|.. .+.+.+|.++|++ -+-+| |-.-..++|++.-+++ +..|+++
T Consensus 83 HLDHg~~----------------------~e~i~~ai~~Gft--SVM~D---gS~l~~eeNi~~T~~vve~Ah~~gv~V 134 (286)
T PRK08610 83 HLDHGSS----------------------FEKCKEAIDAGFT--SVMID---ASHSPFEENVATTKKVVEYAHEKGVSV 134 (286)
T ss_pred ECCCCCC----------------------HHHHHHHHHcCCC--EEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3333321 1334567888997 89999 4445667888777765 3456665
No 441
>PRK02227 hypothetical protein; Provisional
Probab=65.09 E-value=1.5e+02 Score=29.55 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~ 310 (480)
.++..+...+..+...|||+|=||..... ..++-++.+..+++.++... .+..+. -..+ +..
T Consensus 64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~------~~~~~~~~~~~v~~a~~~~~--~~~~vV-av~y---------aD~ 125 (238)
T PRK02227 64 YKPGTISLAALGAAATGADYVKVGLYGGK------TAEEAVEVMKAVVRAVKDLD--PGKIVV-AAGY---------ADA 125 (238)
T ss_pred CCchHHHHHHHHHHhhCCCEEEEcCCCCC------cHHHHHHHHHHHHHhhhhcC--CCCeEE-EEEe---------ccc
Confidence 45578888999999999999999974211 12344566666666666542 111111 0000 011
Q ss_pred CEEecCCCCCCCchHHHHHHhcCCCEEEEcCCC-CCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecC
Q 038230 311 HIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRG-DPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPG 389 (480)
Q Consensus 311 ~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g-~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg 389 (480)
.-+++++ ...+.+++++.|+..+++.+-+ +-.+.-+. -+ .+.|.+-++.+.++|+.
T Consensus 126 ~r~~~~~----~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~-----l~-----~~~L~~Fv~~ar~~Gl~--------- 182 (238)
T PRK02227 126 HRVGSVS----PLSLPAIAADAGFDGAMLDTAIKDGKSLFDH-----MD-----EEELAEFVAEARSHGLM--------- 182 (238)
T ss_pred ccccCCC----hHHHHHHHHHcCCCEEEEecccCCCcchHhh-----CC-----HHHHHHHHHHHHHcccH---------
Confidence 1233222 3578999999999999887632 11222111 11 24567778888999984
Q ss_pred CCCccC-hhHHHHHHHhc
Q 038230 390 LGFSKK-AEHNLDILLGL 406 (480)
Q Consensus 390 iGf~k~-~~~~~~~lr~l 406 (480)
.|.+-+ ..+.+..|+.|
T Consensus 183 ~gLAGSL~~~dip~L~~l 200 (238)
T PRK02227 183 SALAGSLKFEDIPALKRL 200 (238)
T ss_pred hHhcccCchhhHHHHHhc
Confidence 555433 24557778876
No 442
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.03 E-value=48 Score=33.35 Aligned_cols=73 Identities=22% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCC--HHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFY--SKVASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~--~~v~~aa 305 (480)
.+++...+.++++.+.|||.|=+. .+ - | +-..+++.++ ++.+++.. ++||++ |++- ..-..+|
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~-DT-~-G---~~~P~~v~~l---v~~l~~~~---~~~l~~H~Hnd~GlA~aN~laA 213 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIK-DM-A-G---LLTPYAAYEL---VKALKKEV---GLPIHLHTHDTSGLAVATYLAA 213 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc-CC-C-C---CCCHHHHHHH---HHHHHHhC---CCeEEEEecCCCChHHHHHHHH
Confidence 588999999999999999999886 11 1 1 1112445544 55666652 578888 4443 3445678
Q ss_pred HHcCCCEEec
Q 038230 306 VGKGAHIVND 315 (480)
Q Consensus 306 L~~G~~iINd 315 (480)
+++|+++|..
T Consensus 214 ~~aGa~~vd~ 223 (275)
T cd07937 214 AEAGVDIVDT 223 (275)
T ss_pred HHhCCCEEEE
Confidence 8899999873
No 443
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.97 E-value=20 Score=37.24 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
.++++.+.++|+..+-|.+|.-.|..+...+-++-|+. +.++.|++.| ++. |.-.+..+.
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~-~~p~~~vi~g--------~V~-----------t~e~a~~l~ 158 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK-HLPETFVIAG--------NVG-----------TPEAVRELE 158 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh-hCCCCeEEEE--------ecC-----------CHHHHHHHH
Confidence 47778888898855689999988766665553333443 4567899887 121 223345678
Q ss_pred HcCCcEEEcCC
Q 038230 448 LGGANIVRVHN 458 (480)
Q Consensus 448 ~~Ga~IlRvHd 458 (480)
..|++++.|+-
T Consensus 159 ~aGad~i~vg~ 169 (326)
T PRK05458 159 NAGADATKVGI 169 (326)
T ss_pred HcCcCEEEECC
Confidence 89999999773
No 444
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=64.97 E-value=2.8e+02 Score=32.40 Aligned_cols=151 Identities=11% Similarity=0.169 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--EEe-CCCHHHHHHHHHcCCCE
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMA--TKISAEKELERLIPVLEAVLTMPEMEGKLV--SVD-TFYSKVASEAVGKGAHI 312 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a--~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--SID-T~~~~v~~aaL~~G~~i 312 (480)
+.++.+.++|+++|=|=-.+-+-+. ...+.++.+++.+..++...+... .+..| -+. +...+++.+-.+..+|.
T Consensus 590 ~Ev~~L~~aG~~~IQIDEPal~e~~~~~~~~~~~~l~~av~af~~~~~~v~-~~~~I~~H~C~gnf~~I~~~i~~l~~D~ 668 (766)
T PLN02475 590 DEVEDLEKAGITVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQ-DTTQIHTHMCYSNFNDIIHSIIDMDADV 668 (766)
T ss_pred HHHHHHHHcCCCEEEEeCcchhhcCCcCccCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEEecCCcHHHHHHHHhCCCCE
Confidence 3456778899999988644333221 122344556665555555444211 13334 444 33444555555568887
Q ss_pred EecCCCCCCCchHHHHHHh---cCCCEEE--EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 313 VNDVSAGQLDPDMYKVVAG---LKVPYVA--MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 313 INdVsg~~~d~~m~~l~~~---~~~~vVl--mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
+. +-....+.+.++..++ |+..+++ ...+ .|. ++. . +.+.++++++.+. ++++++++.
T Consensus 669 ~~-~E~~rs~~~~l~~l~~~~~~~~~IglGViD~~-s~~-ves---------~----Eei~~rI~~a~~~-v~~e~l~vn 731 (766)
T PLN02475 669 IT-IENSRSDEKLLSVFREGVKYGAGIGPGVYDIH-SPR-IPS---------T----EEIADRINKMLAV-LESNILWVN 731 (766)
T ss_pred EE-EEcCCCChhhhHHHHhhcCCCCeEEEEEEcCC-CCC-CCC---------H----HHHHHHHHHHHHh-CCcceEEEc
Confidence 76 4332222344666644 4444443 2221 121 111 1 4456777777766 678899999
Q ss_pred cCCCCcc-ChhHHHHHHHhc
Q 038230 388 PGLGFSK-KAEHNLDILLGL 406 (480)
Q Consensus 388 PgiGf~k-~~~~~~~~lr~l 406 (480)
|=-||.. +......-|++|
T Consensus 732 PDCGl~tr~~~~~~~kL~~m 751 (766)
T PLN02475 732 PDCGLKTRKYPEVKPALKNM 751 (766)
T ss_pred CCCCcccCCHHHHHHHHHHH
Confidence 9777754 333444445554
No 445
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=64.93 E-value=21 Score=35.58 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCEE
Q 038230 230 FQSVEAAVSQVRLMISEGADMI 251 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiI 251 (480)
+-|..+.++.|++++++|=.++
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vl 127 (248)
T cd04728 106 LPDPIETLKAAEILVKEGFTVL 127 (248)
T ss_pred ccCHHHHHHHHHHHHHCCCEEE
Confidence 4577888999999999998888
No 446
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=64.93 E-value=1.1e+02 Score=29.59 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHcCCcC---CCCeEEEeCCCHHH-HHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQSTR--PMATKISAEKELERLIPVLEAVLTMPEM---EGKLVSVDTFYSKV-ASEA 305 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eStr--P~a~~v~~~eE~~rl~~vi~~l~~~~~~---~~~pISIDT~~~~v-~~aa 305 (480)
|....-+...+|+.+|||+|-+-..-+. |+-+. =-|+|+.|++.... -|+-+.| .+|+- +..-
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~---------G~pvV~slR~~~~~~~ffD~HmMV--~~Peq~V~~~ 83 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITF---------GPPVVESLRKHTGADPFFDVHMMV--ENPEQWVDQM 83 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCccc---------chHHHHHHHhccCCCcceeEEEee--cCHHHHHHHH
Confidence 3445667889999999999877654333 33221 12678888875211 1233444 34443 3344
Q ss_pred HHcCCCEEecCCCCC-CC-chHHHHHHhcCCCEEEEcCCCCC
Q 038230 306 VGKGAHIVNDVSAGQ-LD-PDMYKVVAGLKVPYVAMHMRGDP 345 (480)
Q Consensus 306 L~~G~~iINdVsg~~-~d-~~m~~l~~~~~~~vVlmh~~g~p 345 (480)
.++||++.- +-.+. .+ .++.+.+++.|..+=+--..|+|
T Consensus 84 a~agas~~t-fH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~ 124 (224)
T KOG3111|consen 84 AKAGASLFT-FHYEATQKPAELVEKIREKGMKVGLALKPGTP 124 (224)
T ss_pred HhcCcceEE-EEEeeccCHHHHHHHHHHcCCeeeEEeCCCCc
Confidence 457888764 22221 22 46788888888766554444444
No 447
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.86 E-value=37 Score=33.17 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE-eCCC--------HHHHHH
Q 038230 237 VSQVRLMISEGADMIDIGAQSTRPMA---TKISAEKELERLIPVLEAVLTMPEMEGKLVSV-DTFY--------SKVASE 304 (480)
Q Consensus 237 ~~~A~~~v~~GAdiIDIG~eStrP~a---~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI-DT~~--------~~v~~a 304 (480)
.+.++...+.|++.|-|-...+.... ...+.++.++++.+.++.+++.- ..+-+++ |+++ .+.++.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 34567777889999999864331000 01345678999999999999862 2455666 7888 888999
Q ss_pred HHHcCCCEEe
Q 038230 305 AVGKGAHIVN 314 (480)
Q Consensus 305 aL~~G~~iIN 314 (480)
+.+.|++.|.
T Consensus 155 ~~~~g~~~i~ 164 (265)
T cd03174 155 LEEAGADEIS 164 (265)
T ss_pred HHHcCCCEEE
Confidence 9999998776
No 448
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=64.70 E-value=1.7e+02 Score=29.97 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=46.7
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCH---HHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYS---KVAS 303 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~---~v~~ 303 (480)
...++.+++...++++.+.|...|.+.| ..|.. . . .+..+++.+.+. .++ .++|.|.-. +.++
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~tG--GEPll----r-~---dl~~li~~i~~~---~~l~~i~itTNG~ll~~~~~ 108 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLTG--GEPLV----R-R---GCDQLVARLGKL---PGLEELSLTTNGSRLARFAA 108 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCc----c-c---cHHHHHHHHHhC---CCCceEEEEeChhHHHHHHH
Confidence 3457899999999999999999998854 22421 1 2 234456666654 133 577877542 3344
Q ss_pred HHHHcCCCEEe
Q 038230 304 EAVGKGAHIVN 314 (480)
Q Consensus 304 aaL~~G~~iIN 314 (480)
+-.++|.+.||
T Consensus 109 ~L~~aGl~~v~ 119 (329)
T PRK13361 109 ELADAGLKRLN 119 (329)
T ss_pred HHHHcCCCeEE
Confidence 44456888765
No 449
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=64.66 E-value=73 Score=34.24 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=72.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-C-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTR-P-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEA 305 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStr-P-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aa 305 (480)
+..+++++++.++.+++.|+.-|-+.++... . +... + ....++..+++.|.+. .++ .|.+-+.+|
T Consensus 174 ~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~-~--~~~~~l~~Ll~~l~~~---~~~~~ir~~~~~p------ 241 (444)
T PRK14325 174 VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGP-D--GEIADFAELLRLVAAI---DGIERIRYTTSHP------ 241 (444)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCC-C--CCcchHHHHHHHHHhc---CCccEEEEccCCc------
Confidence 4568999999999999999988755443221 1 1000 0 0011344445555543 122 233333222
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS-- 377 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~-- 377 (480)
...+++++++.++.+ |..+-+..+ |.+. .|.+. | . .+.+.+.++.+.++
T Consensus 242 -------------~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~----~--~----~~~~~~~i~~lr~~~~ 298 (444)
T PRK14325 242 -------------RDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRG----H--T----ALEYKSIIRKLRAARP 298 (444)
T ss_pred -------------ccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCC----C--C----HHHHHHHHHHHHHHCC
Confidence 112467777777764 555544332 2221 22221 1 0 13445777777776
Q ss_pred CCCCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 378 GIPAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 378 Gi~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
|+ .+-.|=.+|| +.+.++-.++++-+
T Consensus 299 gi---~v~~~~IvG~PgET~ed~~~tl~~i 325 (444)
T PRK14325 299 DI---AISSDFIVGFPGETDEDFEATMKLI 325 (444)
T ss_pred CC---EEEeeEEEECCCCCHHHHHHHHHHH
Confidence 55 3777777887 55654444444433
No 450
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=64.41 E-value=27 Score=39.21 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCH--HHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYS--KVASE 304 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~--~v~~a 304 (480)
+.+.+..++.++++.+.|||.|-|.= |.- ...+ +++.+ +++.|++.. ++||.+ ||+-- ....+
T Consensus 145 ~~~~~~~~~~~~~~~~~Gad~I~i~D--t~G---~~~P-~~v~~---lv~~lk~~~---~~pi~~H~Hnt~Gla~An~la 212 (582)
T TIGR01108 145 VHTLETYLDLAEELLEMGVDSICIKD--MAG---ILTP-KAAYE---LVSALKKRF---GLPVHLHSHATTGMAEMALLK 212 (582)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC---CcCH-HHHHH---HHHHHHHhC---CCceEEEecCCCCcHHHHHHH
Confidence 56899999999999999999997651 111 1112 34444 456666652 688988 44443 44567
Q ss_pred HHHcCCCEEecC
Q 038230 305 AVGKGAHIVNDV 316 (480)
Q Consensus 305 aL~~G~~iINdV 316 (480)
|+++|+++|..-
T Consensus 213 AveaGa~~vd~a 224 (582)
T TIGR01108 213 AIEAGADGIDTA 224 (582)
T ss_pred HHHhCCCEEEec
Confidence 889999998643
No 451
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=64.37 E-value=56 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCC---------CC----CCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEE
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQ---------ST----RPMATKISAEKELERLIPVLEAVLTMPEMEGKLVS 293 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~e---------St----rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pIS 293 (480)
++..+-|+...++|.|.|+|-+. |. |..-=.-|.+.-++.+..+++++++... .+.+|.
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG-~d~~v~ 208 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG-EDFIII 208 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC-CCceEE
Confidence 44456678888999999999762 22 2211123556678888899999998643 256665
No 452
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=64.19 E-value=1.7e+02 Score=29.82 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC--CCeEEE--eCCCHHHHHHH
Q 038230 230 FQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME--GKLVSV--DTFYSKVASEA 305 (480)
Q Consensus 230 ~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~--~~pISI--DT~~~~v~~aa 305 (480)
..+.|.+....+.-.+.++-+|==-.+++...... .+.+.+.++.+.+. . ++||+| |=-+.+.+++|
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~------~~~~~~~~~~~a~~---~~~~vPV~lHLDH~~~~~i~~a 95 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG------YKVCKNLIENLVES---MGITVPVAIHLDHGHYEDALEC 95 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc------HHHHHHHHHHHHHH---cCCCCcEEEECCCCCHHHHHHH
Q ss_pred HHcCCCEEecCCCCCCC--------chHHHHHHhcCCCEE--EEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 038230 306 VGKGAHIVNDVSAGQLD--------PDMYKVVAGLKVPYV--AMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAE 375 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d--------~~m~~l~~~~~~~vV--lmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~ 375 (480)
++.|.+.|- +.+...+ .++.+++..+|+++- +=+..|.+........ |.++ +....+.
T Consensus 96 i~~GftSVm-~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~--~t~p---------eea~~f~ 163 (293)
T PRK07315 96 IEVGYTSIM-FDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGE--LAPI---------EDAKAMV 163 (293)
T ss_pred HHcCCCEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccC--CCCH---------HHHHHHH
Q ss_pred HCCCCCCCEEEecCCC-----Ccc-ChhHHHHHHHhc-ccC-CCcEEE
Q 038230 376 LSGIPAWRIIIDPGLG-----FSK-KAEHNLDILLGL-AAS-HAPILI 415 (480)
Q Consensus 376 ~~Gi~~~~IilDPgiG-----f~k-~~~~~~~~lr~l-~~~-g~Pil~ 415 (480)
+.|++ +|=+|+| |.. +..-+++.|+++ +.. ++|+.+
T Consensus 164 ~tgvD----~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVl 207 (293)
T PRK07315 164 ETGID----FLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVL 207 (293)
T ss_pred HcCCC----EEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEE
No 453
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.17 E-value=1.5e+02 Score=29.05 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC----CccChhH
Q 038230 323 PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG----FSKKAEH 398 (480)
Q Consensus 323 ~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG----f~k~~~~ 398 (480)
..++++++..|++.|+++...... . ..+++..+...+.+++..+.|.++|| +|.+-|... +..+...
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~-~-----~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~iE~~~~~~~~~~~t~~~ 163 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGY-L-----TPPNVIWGRLAENLSELCEYAENIGM---DLILEPLTPYESNVVCNAND 163 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCC-C-----CCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEecCCCCcccccCCHHH
Confidence 356788899999998876521110 0 01234456667788888899999999 488888532 2345566
Q ss_pred HHHHHHhc
Q 038230 399 NLDILLGL 406 (480)
Q Consensus 399 ~~~~lr~l 406 (480)
..++++.+
T Consensus 164 ~~~l~~~~ 171 (275)
T PRK09856 164 VLHALALV 171 (275)
T ss_pred HHHHHHHc
Confidence 67777765
No 454
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.02 E-value=21 Score=39.12 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHH
Q 038230 366 ELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITA 445 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~ 445 (480)
...++++.+.++|++ -|++|.-.|.++...+.++-||. ++++.+++.| |+ .|...+..
T Consensus 227 ~~~~~a~~Lv~aGvd--~i~~D~a~~~~~~~~~~i~~ik~-~~p~~~v~ag--------nv-----------~t~~~a~~ 284 (479)
T PRK07807 227 DVAAKARALLEAGVD--VLVVDTAHGHQEKMLEALRAVRA-LDPGVPIVAG--------NV-----------VTAEGTRD 284 (479)
T ss_pred hHHHHHHHHHHhCCC--EEEEeccCCccHHHHHHHHHHHH-HCCCCeEEee--------cc-----------CCHHHHHH
Confidence 456788888999998 59999988876654443444443 4678888876 22 23344556
Q ss_pred HHHcCCcEEE
Q 038230 446 GVLGGANIVR 455 (480)
Q Consensus 446 a~~~Ga~IlR 455 (480)
+...|||.++
T Consensus 285 l~~aGad~v~ 294 (479)
T PRK07807 285 LVEAGADIVK 294 (479)
T ss_pred HHHcCCCEEE
Confidence 7789999999
No 455
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=63.92 E-value=95 Score=32.29 Aligned_cols=105 Identities=21% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHcCCcC--CCCeEEEeC--
Q 038230 234 EAAVSQVRLMISEGADMIDIGAQS-------------TRPMATKISAEKELERLIPVLEAVLTMPEM--EGKLVSVDT-- 296 (480)
Q Consensus 234 e~a~~~A~~~v~~GAdiIDIG~eS-------------trP~a~~v~~~eE~~rl~~vi~~l~~~~~~--~~~pISIDT-- 296 (480)
++..+-|+...++|.|.|+|.+.- .|...-.-|.+.-.+-+..+|+++++.... ..+.+|.+-
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 344566788889999999997432 222111234566788888999999976321 122333331
Q ss_pred ------CCH----HHHHHHHHcCCCEEecCCCCCC-------CchHHHHHHh-cCCCEEEE
Q 038230 297 ------FYS----KVASEAVGKGAHIVNDVSAGQL-------DPDMYKVVAG-LKVPYVAM 339 (480)
Q Consensus 297 ------~~~----~v~~aaL~~G~~iINdVsg~~~-------d~~m~~l~~~-~~~~vVlm 339 (480)
... ++++..-+.|+|+|+ |+.+.. ...+...+++ .++||++.
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~-vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~ 291 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLH-LVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAA 291 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEE-EecCCCCCcccccchHHHHHHHHHcCCCEEEE
Confidence 133 333444446999998 544321 1223333444 56777764
No 456
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=63.87 E-value=2.3e+02 Score=31.03 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMIS-EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVG 307 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~-~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~ 307 (480)
+..+++.+++..+.+++ .|+..+.+.-+. +.. + .+++..+++++.+... .++..++.|.
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~--f~~---~----~~~~~~l~~~l~~~~~-l~i~w~~~~r---------- 279 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEE--PTI---N----RKKFQEFCEEIIARNP-ISVTWGINTR---------- 279 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecc--ccc---C----HHHHHHHHHHHHhcCC-CCeEEEEecc----------
Confidence 55789999999999875 699888765322 221 1 2456667777765410 1222332221
Q ss_pred cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCC-CCCc---cccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038230 308 KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRG-DPST---MQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWR 383 (480)
Q Consensus 308 ~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g-~p~~---~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~ 383 (480)
+ +++. .+++++++.++.|+..|.+-... .+.. +.+.. . . +...+.++.+.++||.
T Consensus 280 --~---~~i~---~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~--t----~----~~~~~ai~~l~~~Gi~--- 338 (497)
T TIGR02026 280 --V---TDIV---RDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGT--T----T----STNKEAIRLLRQHNIL--- 338 (497)
T ss_pred --c---cccc---CCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCC--C----H----HHHHHHHHHHHHCCCc---
Confidence 0 1111 14566666666666665553321 2211 11110 0 1 2345778888999995
Q ss_pred EEEecCCCC-ccChhHHHHHHHhc
Q 038230 384 IIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 384 IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
+..+=-+|+ +.+.++-.++++.+
T Consensus 339 ~~~~~I~G~P~et~e~~~~t~~~~ 362 (497)
T TIGR02026 339 SEAQFITGFENETDETFEETYRQL 362 (497)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHH
Confidence 566666676 55555555555554
No 457
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=63.83 E-value=46 Score=33.39 Aligned_cols=99 Identities=18% Similarity=0.375 Sum_probs=59.0
Q ss_pred CCEEEE-cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCC--CccCh-hHHHHHHHh----
Q 038230 334 VPYVAM-HMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLG--FSKKA-EHNLDILLG---- 405 (480)
Q Consensus 334 ~~vVlm-h~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiG--f~k~~-~~~~~~lr~---- 405 (480)
-++|-| |-...|.++. |..-++++.+...+-.+.+++.|++ =|++-=-.. |.+.. .+....+..
T Consensus 3 KpiIGmvHL~pLPGsp~------~~~~~~~iie~A~~ea~~l~~~GvD--giiveN~~D~Py~~~~~~etvaaM~~i~~~ 74 (254)
T PF03437_consen 3 KPIIGMVHLPPLPGSPR------YDGSMEEIIERAVREAEALEEGGVD--GIIVENMGDVPYPKRVGPETVAAMARIARE 74 (254)
T ss_pred CCEEEEEcCCCCCcCCC------CCCCHHHHHHHHHHHHHHHHHCCCC--EEEEecCCCCCccCCCCHHHHHHHHHHHHH
Confidence 366654 8776776543 3335778888889999999999998 677654221 22221 122222222
Q ss_pred c-ccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 406 L-AASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 406 l-~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
+ +..++| +|+ +++-. ...++.++|...|++.+|+-
T Consensus 75 v~~~~~~p--~GV-------nvL~n--------d~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 75 VRREVSVP--VGV-------NVLRN--------DPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHhCCCC--EEe-------eeecC--------CCHHHHHHHHHhCCCEEEec
Confidence 2 345777 476 33321 12234567888999999953
No 458
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=63.78 E-value=1.9e+02 Score=30.16 Aligned_cols=134 Identities=16% Similarity=0.263 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHc---CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcC-CCCeEEE----eCCCHHHHHH
Q 038230 233 VEAAVSQVRLMISE---GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEM-EGKLVSV----DTFYSKVASE 304 (480)
Q Consensus 233 ~e~a~~~A~~~v~~---GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~-~~~pISI----DT~~~~v~~a 304 (480)
.+.+++.++..... +.+-|-+|+.. |.. .+ .+++.++. +.+++.+.. .+..+++ |+.+.+.++.
T Consensus 34 ~~~l~~Ei~~~~~~~~~~i~~i~~gGGt--pt~--l~-~~~l~~ll---~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~ 105 (377)
T PRK08599 34 LDALIKEMNTYAIRPFDKLKTIYIGGGT--PTA--LS-AEQLERLL---TAIHRNLPLSGLEEFTFEANPGDLTKEKLQV 105 (377)
T ss_pred HHHHHHHHHHhhhcCCCceeEEEeCCCC--ccc--CC-HHHHHHHH---HHHHHhCCCCCCCEEEEEeCCCCCCHHHHHH
Confidence 44555555433332 45668887632 321 11 34555554 444443211 1123444 4555666655
Q ss_pred HHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 305 AVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 305 aL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
.-++|...|+ +.-...++++++...+ +.+ .+...+.++.+.++|++ .+
T Consensus 106 l~~~G~~rvs-iGvqS~~~~~l~~l~r-------------~~~----------------~~~~~~~i~~l~~~g~~--~v 153 (377)
T PRK08599 106 LKDSGVNRIS-LGVQTFNDELLKKIGR-------------THN----------------EEDVYEAIANAKKAGFD--NI 153 (377)
T ss_pred HHHcCCCEEE-EecccCCHHHHHHcCC-------------CCC----------------HHHHHHHHHHHHHcCCC--cE
Confidence 5556655443 3333334555543211 111 12345778888889986 67
Q ss_pred EEecCCCC-ccChhHHHHHHHhc
Q 038230 385 IIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 385 ilDPgiGf-~k~~~~~~~~lr~l 406 (480)
-+|=.+|+ +.+.++-.+.++.+
T Consensus 154 ~~dli~GlPgqt~~~~~~~l~~~ 176 (377)
T PRK08599 154 SIDLIYALPGQTIEDFKESLAKA 176 (377)
T ss_pred EEeeecCCCCCCHHHHHHHHHHH
Confidence 78887887 55554444444443
No 459
>PRK05926 hypothetical protein; Provisional
Probab=63.60 E-value=1.3e+02 Score=31.83 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCCcEEEEEEec--C----CC----CCCC-----CCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHH
Q 038230 208 SLKTSVMGILNL--T----PD----SFSD-----GGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELE 272 (480)
Q Consensus 208 ~~~~~imGIlN~--t----pD----SFsd-----gg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~ 272 (480)
+.+....+++|+ | .| +|+. ....++.|++++.|++. +.||.-+-+-+ ...|. .+++
T Consensus 61 G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~-G~~p~-------~~~e 131 (370)
T PRK05926 61 GDTVYYSSTLYLYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVA-GCFPS-------CNLA 131 (370)
T ss_pred CCeEEEEEeeeeecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEe-CcCCC-------CCHH
Confidence 345667777766 4 33 4553 22347899999999998 79987666643 11232 3577
Q ss_pred HHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 273 RLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 273 rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
++..+++.|++.+ ++ +.+..+.+
T Consensus 132 ~~~e~i~~Ik~~~--p~--i~i~a~s~ 154 (370)
T PRK05926 132 YYEELFSKIKQNF--PD--LHIKALTA 154 (370)
T ss_pred HHHHHHHHHHHhC--CC--eeEEECCH
Confidence 8888899998752 12 55554443
No 460
>PRK09358 adenosine deaminase; Provisional
Probab=63.15 E-value=87 Score=32.14 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHH--cCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC---CHHHHHHHHH
Q 038230 233 VEAAVSQVRLMIS--EGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF---YSKVASEAVG 307 (480)
Q Consensus 233 ~e~a~~~A~~~v~--~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~---~~~v~~aaL~ 307 (480)
.+.+.+.++.+++ .+..++-+|..+ |.. ..+ .++ +.++.+..++. ++++.+=.. .++.+..|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g--~e~-~~~-~~~---~~~~~~~A~~~----g~~~~~H~~E~~~~~~~~~al~ 216 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAG--DEL-GFP-PSK---FARAFDRARDA----GLRLTAHAGEAGGPESIWEALD 216 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCC--cCC-CCC-HHH---HHHHHHHHHHC----CCCeEEcCCCCCchhHHHHHHH
Confidence 4556666565655 455555444321 111 112 233 44556666765 788888654 6667778888
Q ss_pred -cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcC
Q 038230 308 -KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHM 341 (480)
Q Consensus 308 -~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~ 341 (480)
.|++-|-=-.....+++.++.+++.|+++.+++.
T Consensus 217 ~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~ 251 (340)
T PRK09358 217 ELGAERIGHGVRAIEDPALMARLADRRIPLEVCPT 251 (340)
T ss_pred HcCCcccchhhhhccCHHHHHHHHHcCCeEEECCC
Confidence 6887652111122257799999999999998775
No 461
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=63.05 E-value=1e+02 Score=33.09 Aligned_cols=135 Identities=8% Similarity=0.051 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHcCCcCCCCeEEEeCC--CHHHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISA---EKELERLIPVLEAVLTMPEMEGKLVSVDTF--YSKVASEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~---~eE~~rl~~vi~~l~~~~~~~~~pISIDT~--~~~v~~aa 305 (480)
.+.+++++..+++.++.+.+- +=.| +|++. ++.++.+..+-+.+++.. .++||+.|=. +++-++..
T Consensus 245 ~~~~~ai~~l~~l~~~~~~~~-~~iE------qPv~~~d~~~~~e~la~Lr~~~~~~~--~~vPI~aDEs~~t~~d~~~~ 315 (408)
T TIGR01502 245 VDIKAMADYIQTLAEAAKPFH-LRIE------GPMDVGSRQAQIEAMADLRAELDGRG--VDAEIVADEWCNTVEDVKFF 315 (408)
T ss_pred CCHHHHHHHHHHHHHhCccCC-eEEe------cCCCCCcchhhHHHHHHHHHHhhcCC--CCceEEecCCCCCHHHHHHH
Confidence 467778877777765433221 1222 23332 123444444333333221 4799999965 68888888
Q ss_pred HHc-CCCEEec----CCCCCCCchHHHHHHhcCCCEEEEcCC-CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 306 VGK-GAHIVND----VSAGQLDPDMYKVVAGLKVPYVAMHMR-GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 306 L~~-G~~iINd----Vsg~~~d~~m~~l~~~~~~~vVlmh~~-g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
++. .+++||- +-|.+.--++..+|..+|.++.+-.+. +.+- ......-....+
T Consensus 316 i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I---------------------~~aa~~Hlaaa~ 374 (408)
T TIGR01502 316 TDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR---------------------SAEVTTHVGMAT 374 (408)
T ss_pred HHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH---------------------HHHHHHHHHHhc
Confidence 887 4778883 122221257899999999999984332 1110 011111133446
Q ss_pred CCCCEEEecCCCCccC
Q 038230 380 PAWRIIIDPGLGFSKK 395 (480)
Q Consensus 380 ~~~~IilDPgiGf~k~ 395 (480)
++..++.=||+||-..
T Consensus 375 ~~~~~l~kpg~g~d~~ 390 (408)
T TIGR01502 375 GARQVLAKPGMGVDEG 390 (408)
T ss_pred CCCceEecCCCCcchh
Confidence 7789999999999654
No 462
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=62.89 E-value=58 Score=34.00 Aligned_cols=130 Identities=22% Similarity=0.379 Sum_probs=69.3
Q ss_pred cCCCEEecCCCCCCC--chHHHHHHhcCCCEEE-EcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCE
Q 038230 308 KGAHIVNDVSAGQLD--PDMYKVVAGLKVPYVA-MHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRI 384 (480)
Q Consensus 308 ~G~~iINdVsg~~~d--~~m~~l~~~~~~~vVl-mh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~I 384 (480)
+|++|+- |+--+.+ +.+-++.++.+.|+|. .|.. .+..-.+-++|++ .+
T Consensus 48 aG~dIVR-vtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~-------------------------~rla~~~~~~g~~--k~ 99 (361)
T COG0821 48 AGCDIVR-VTVPDMEAAEALKEIKQRLNVPLVADIHFD-------------------------YRLALEAAECGVD--KV 99 (361)
T ss_pred cCCCEEE-EecCCHHHHHHHHHHHHhCCCCEEEEeecc-------------------------HHHHHHhhhcCcc--eE
Confidence 4888886 4433211 3455666677888886 2321 2344445678876 88
Q ss_pred EEecC-CCCccChhHHHHHHHhcccCCCcEEEeeccccccccc---cCCCCcCcccHHHHHH-HHHHHHcCC-cE---EE
Q 038230 385 IIDPG-LGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEI---CNRPSADERDPATIAS-ITAGVLGGA-NI---VR 455 (480)
Q Consensus 385 ilDPg-iGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v---~g~~~~~~r~~~t~a~-~~~a~~~Ga-~I---lR 455 (480)
=+-|| +|+......-.+.. +..|.|+=+|+.-=|.=..+ ++.|.+ +-+..++.- +.++-+.|. +| +.
T Consensus 100 RINPGNig~~~~v~~vVe~A---k~~g~piRIGVN~GSLek~~~~ky~~pt~-ealveSAl~~a~~~e~l~f~~i~iS~K 175 (361)
T COG0821 100 RINPGNIGFKDRVREVVEAA---KDKGIPIRIGVNAGSLEKRLLEKYGGPTP-EALVESALEHAELLEELGFDDIKVSVK 175 (361)
T ss_pred EECCcccCcHHHHHHHHHHH---HHcCCCEEEecccCchhHHHHHHhcCCCH-HHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 88997 67766433322223 44799999888543332222 122222 233333332 233444563 33 35
Q ss_pred cCChHHHHHHHHHH
Q 038230 456 VHNIRDNLDAVKLC 469 (480)
Q Consensus 456 vHdV~e~~~al~~~ 469 (480)
+.||.++.+|-++.
T Consensus 176 ~Sdv~~~v~aYr~l 189 (361)
T COG0821 176 ASDVQLMVAAYRLL 189 (361)
T ss_pred cCCHHHHHHHHHHH
Confidence 66777666655443
No 463
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.67 E-value=99 Score=29.93 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=57.7
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCCCEEecCCC
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGAHIVNDVSA 318 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~~iINdVsg 318 (480)
++++.+++||++|-= |+.. + .+++..++. ++|..=-.+.|..+..|+++|+++|-=.-+
T Consensus 68 ~a~~ai~aGA~FivS------P~~~-----~------~vi~~a~~~----~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa 126 (201)
T PRK06015 68 QFEDAAKAGSRFIVS------PGTT-----Q------ELLAAANDS----DVPLLPGAATPSEVMALREEGYTVLKFFPA 126 (201)
T ss_pred HHHHHHHcCCCEEEC------CCCC-----H------HHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCEEEECCc
Confidence 678888999999853 4432 2 234444554 888888999999999999999999875444
Q ss_pred CCC-CchHHHHHHhcCCCEEEEcCCCCC
Q 038230 319 GQL-DPDMYKVVAGLKVPYVAMHMRGDP 345 (480)
Q Consensus 319 ~~~-d~~m~~l~~~~~~~vVlmh~~g~p 345 (480)
... -+.+++-++.-=-.+-+|+..|..
T Consensus 127 ~~~GG~~yikal~~plp~~~l~ptGGV~ 154 (201)
T PRK06015 127 EQAGGAAFLKALSSPLAGTFFCPTGGIS 154 (201)
T ss_pred hhhCCHHHHHHHHhhCCCCcEEecCCCC
Confidence 332 255555555422345567777764
No 464
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.51 E-value=1e+02 Score=34.04 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL 306 (480)
+..+++++++.++.+.+.|+.-|-+-++...- |.+.-+.. .++..+++.|.+. ++ -+.+-|.+|.
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~---~~l~~Ll~~I~~~----~i~~ir~~s~~P~------ 305 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIE---YGLGDLMDEIRKI----DIPRVRFTTSHPR------ 305 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccc---hHHHHHHHHHHhC----CCceEEEeecCcc------
Confidence 45789999999999999999766554433221 11100001 1244455555543 22 1333333331
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHC--C
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELS--G 378 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~--G 378 (480)
..+++++++.++++ +..+-+..+ |... .|.+. |. .+.+.+.++++.++ |
T Consensus 306 -------------~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~----~t------~e~~~~~v~~lr~~~p~ 362 (509)
T PRK14327 306 -------------DFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARK----YT------RESYLELVRKIKEAIPN 362 (509)
T ss_pred -------------cCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCC----CC------HHHHHHHHHHHHHhCCC
Confidence 12578888888887 445555443 2222 23221 11 13445777777777 3
Q ss_pred CCCCCEEEecCCCC-ccChhH---HHHHHHhc
Q 038230 379 IPAWRIIIDPGLGF-SKKAEH---NLDILLGL 406 (480)
Q Consensus 379 i~~~~IilDPgiGf-~k~~~~---~~~~lr~l 406 (480)
+ .+-.|=.+|| +.+.++ +++.++++
T Consensus 363 i---~i~tdiIvGfPgET~edf~~Tl~~v~~l 391 (509)
T PRK14327 363 V---ALTTDIIVGFPNETDEQFEETLSLYREV 391 (509)
T ss_pred c---EEeeeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 4 2455777787 555544 45555554
No 465
>PRK07534 methionine synthase I; Validated
Probab=62.43 E-value=2e+02 Score=29.94 Aligned_cols=164 Identities=22% Similarity=0.222 Sum_probs=90.9
Q ss_pred CcEEEEEEecCCCCCCCCCccCCHHHHH----HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 038230 210 KTSVMGILNLTPDSFSDGGKFQSVEAAV----SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMP 285 (480)
Q Consensus 210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~----~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~ 285 (480)
++.|.|-|--..++..++|. .+.+++. .+++.+++.|+|+|=+- |-|. -+|.+- +++.+++.
T Consensus 104 ~~~VaGsIGP~g~~l~~~~~-~~~~e~~~~~~~qi~~l~~~gvD~l~~E---T~p~------l~E~~a---~~~~~~~~- 169 (336)
T PRK07534 104 KVIVAGSVGPTGEIMEPMGA-LTHALAVEAFHEQAEGLKAGGADVLWVE---TISA------PEEIRA---AAEAAKLA- 169 (336)
T ss_pred ccEEEEecCCCccccCCCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEe---ccCC------HHHHHH---HHHHHHHc-
Confidence 46788888888888877765 3444443 45677779999999886 3343 245554 44555543
Q ss_pred cCCCCe--EEE--e-------CCCHHHHHHHHH-cCC--CEEecCCCCCCCch-HHHHHHh----c-CCCEEEEcCCCCC
Q 038230 286 EMEGKL--VSV--D-------TFYSKVASEAVG-KGA--HIVNDVSAGQLDPD-MYKVVAG----L-KVPYVAMHMRGDP 345 (480)
Q Consensus 286 ~~~~~p--ISI--D-------T~~~~v~~aaL~-~G~--~iINdVsg~~~d~~-m~~l~~~----~-~~~vVlmh~~g~p 345 (480)
++| +|+ + -...+.+.+.++ .|+ +.|- ++... .++ |++.+.+ . +.++++.++-|.|
T Consensus 170 ---~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avG-vNC~~-gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p 244 (336)
T PRK07534 170 ---GMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFG-ANCGV-GASDLLRTVLGFTAQGPERPIIAKGNAGIP 244 (336)
T ss_pred ---CCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEE-ecCCC-CHHHHHHHHHHHHHhcCCCeEEEEcCCCCc
Confidence 444 333 2 244444555554 343 4322 44432 233 4344333 2 5688899998887
Q ss_pred CccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHh
Q 038230 346 STMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLG 405 (480)
Q Consensus 346 ~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~ 405 (480)
....... .|+.-. +++.+.+....+.|+. || |==-+.+.+| ++.|++
T Consensus 245 ~~~~~~~--~~~~~p----~~~~~~~~~~~~~Ga~---iI---GGCCGTtP~h-I~~la~ 291 (336)
T PRK07534 245 KYVDGHI--HYDGTP----ELMAEYAVLARDAGAR---II---GGCCGTMPEH-LAAMRA 291 (336)
T ss_pred ccCCCcc--ccCCCH----HHHHHHHHHHHHcCCc---EE---eeecCCCHHH-HHHHHH
Confidence 5432211 122111 3566777777888985 42 1113566666 444444
No 466
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=62.36 E-value=1.3e+02 Score=27.89 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCEEEeCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHcCCcCC----CCeEEEeCCCHHHHHHHHHcCCCE
Q 038230 238 SQVRLMISEGADMIDIGAQST-RPMATKISAEKELERLIPVLEAVLTMPEME----GKLVSVDTFYSKVASEAVGKGAHI 312 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eSt-rP~a~~v~~~eE~~rl~~vi~~l~~~~~~~----~~pISIDT~~~~v~~aaL~~G~~i 312 (480)
+.++++.++|- +||.-|- -+.....+.++..+.+....+.|++..... ..|- =.+++.+.+.+-+.|-.+
T Consensus 49 ~~~~~i~~~Gh---eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~fr~P~--G~~~~~~~~~l~~~G~~~ 123 (191)
T TIGR02764 49 ELVKEIVKDGH---EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPTLFRPPS--GAFNKAVLKAAESLGYTV 123 (191)
T ss_pred HHHHHHHhCCC---EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEEECCC--cCCCHHHHHHHHHcCCeE
Confidence 56788999994 5564322 244455666655555555555554431100 1121 246788888888889876
Q ss_pred Ee-cCCCCCCC----chHHHHH-Hh-cCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 313 VN-DVSAGQLD----PDMYKVV-AG-LKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 313 IN-dVsg~~~d----~~m~~l~-~~-~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
+. |+.+.... +.+..-+ +. ..-.+|+||...... ...+.|...+..+++.|..
T Consensus 124 v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~---------------~t~~~l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 124 VHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLHASDSAK---------------QTVKALPTIIKKLKEKGYE 183 (191)
T ss_pred EEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEeCCCCcH---------------hHHHHHHHHHHHHHHCCCE
Confidence 65 55543322 2333322 22 234699999731110 1125577888999999985
No 467
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=62.33 E-value=41 Score=35.22 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCEEEeC-----CCCCCCCC-CCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHHHHHHHHHcCC
Q 038230 239 QVRLMISEGADMIDIG-----AQSTRPMA-TKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSKVASEAVGKGA 310 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG-----~eStrP~a-~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~v~~aaL~~G~ 310 (480)
.|+.++++|||.|=|| ...||--. -.++ .+.-+..+.++.... ++||-.|. .++.-+-.||.+||
T Consensus 163 ~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p---qltAv~~~a~aa~~~----~v~VIaDGGIr~~gDI~KALA~GA 235 (343)
T TIGR01305 163 MVEELILSGADIVKVGIGPGSVCTTRTKTGVGYP---QLSAVIECADAAHGL----KGHIISDGGCTCPGDVAKAFGAGA 235 (343)
T ss_pred HHHHHHHcCCCEEEEcccCCCcccCceeCCCCcC---HHHHHHHHHHHhccC----CCeEEEcCCcCchhHHHHHHHcCC
Confidence 5678889999999999 44455311 1112 355555555555543 78999996 56677778898998
Q ss_pred CEEe
Q 038230 311 HIVN 314 (480)
Q Consensus 311 ~iIN 314 (480)
+.+-
T Consensus 236 d~VM 239 (343)
T TIGR01305 236 DFVM 239 (343)
T ss_pred CEEE
Confidence 8664
No 468
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.29 E-value=1.8e+02 Score=29.73 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=68.6
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeE--------EE---------eCCCHHH
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLV--------SV---------DTFYSKV 301 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pI--------SI---------DT~~~~v 301 (480)
.+++.++.|.+=+=+-| |..| -+|-++....+++..+.. +++| .- .-++|+.
T Consensus 89 ~i~~Ai~~GftSVM~Dg-S~l~------~eeNi~~T~~vve~Ah~~----gv~VEaElG~vgg~ed~~~~~~~~~T~pe~ 157 (283)
T PRK07998 89 DVKQAVRAGFTSVMIDG-AALP------FEENIAFTKEAVDFAKSY----GVPVEAELGAILGKEDDHVSEADCKTEPEK 157 (283)
T ss_pred HHHHHHHcCCCEEEEeC-CCCC------HHHHHHHHHHHHHHHHHc----CCEEEEEeccCCCccccccccccccCCHHH
Confidence 33444677887766654 4443 466777777777777654 4443 10 1358888
Q ss_pred HHHHHHc-CCCEEecCCCCC---------CC-chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHH
Q 038230 302 ASEAVGK-GAHIVNDVSAGQ---------LD-PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSK 370 (480)
Q Consensus 302 ~~aaL~~-G~~iINdVsg~~---------~d-~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~ 370 (480)
+++-++. |+|.+- |+-++ .+ +.+-++.+..++|+|+--..|.|. +.
T Consensus 158 a~~Fv~~TgvD~LA-vaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~----------------------e~ 214 (283)
T PRK07998 158 VKDFVERTGCDMLA-VSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPP----------------------EI 214 (283)
T ss_pred HHHHHHHhCcCeee-hhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCH----------------------HH
Confidence 8888765 888765 33321 12 445666666789988743455552 33
Q ss_pred HHHHHHCCCCCCCEEEec
Q 038230 371 VRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 371 i~~a~~~Gi~~~~IilDP 388 (480)
+.++.++||. +|=++-
T Consensus 215 ~~~ai~~Gi~--KiNi~T 230 (283)
T PRK07998 215 LRSFVNYKVA--KVNIAS 230 (283)
T ss_pred HHHHHHcCCc--EEEECH
Confidence 4666778887 555443
No 469
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=62.27 E-value=12 Score=36.82 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred hHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEec
Q 038230 324 DMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 324 ~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDP 388 (480)
+-+++|++++.|+|+ |+ |.+-. .+...+.++.+.+.|++++.+++|=
T Consensus 118 ~QL~LA~e~dvPviV-HT---Pr~nK--------------~e~t~~ildi~~~~~l~~~lvvIDH 164 (254)
T COG1099 118 EQLELARELDVPVIV-HT---PRRNK--------------KEATSKILDILIESGLKPSLVVIDH 164 (254)
T ss_pred HHHHHHHHcCCcEEE-eC---CCCcc--------------hhHHHHHHHHHHHcCCChhheehhc
Confidence 458999999999998 53 43211 1445678888999999999999996
No 470
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=62.21 E-value=53 Score=38.15 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=65.3
Q ss_pred cCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC
Q 038230 219 LTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQS--TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT 296 (480)
Q Consensus 219 ~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eS--trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT 296 (480)
-|-|=--.+-...+.+--++.|++++++||+||-|==.+ -+|. --. .+|++|++. .++||-+-|
T Consensus 679 YTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~--------AA~---~Li~aLr~~---~dlPIHlHT 744 (1149)
T COG1038 679 YTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPA--------AAY---RLISALRET---VDLPIHLHT 744 (1149)
T ss_pred eccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHH--------HHH---HHHHHHHHh---cCCceEEec
Confidence 344433333345689999999999999999999885322 1221 122 357888887 599999954
Q ss_pred ---CCH--HHHHHHHHcCCCEE----ecCCCCCCCchHHHHHH
Q 038230 297 ---FYS--KVASEAVGKGAHIV----NDVSAGQLDPDMYKVVA 330 (480)
Q Consensus 297 ---~~~--~v~~aaL~~G~~iI----NdVsg~~~d~~m~~l~~ 330 (480)
.-- ....+|+++|+|++ ++.+|.+.-|.+-.+++
T Consensus 745 HDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~ 787 (1149)
T COG1038 745 HDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVA 787 (1149)
T ss_pred cCCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHH
Confidence 433 35567888999986 56777665566655544
No 471
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.08 E-value=87 Score=32.04 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHcCCcCCCCeEEEeCCCHHHH----HHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP-VLEAVLTMPEMEGKLVSVDTFYSKVA----SEA 305 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~-vi~~l~~~~~~~~~pISIDT~~~~v~----~aa 305 (480)
.|.+...+.++.++++|++-|=++| ||.-+ ...+. ||..++.. +++..... ..+.+.+=+.+.+.+ +.|
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~G-stGE~-~~Lt~-eEr~~v~~~~~~~~~gr---vpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMG-TFGEC-ATLTW-EEKQAFVATVVETVAGR---VPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc-ccccc-hhCCH-HHHHHHHHHHHHHhCCC---CCEEEEeccCCHHHHHHHHHHH
Confidence 7899999999999999999999987 44433 23444 56666654 44444322 234455544444333 333
Q ss_pred HHcCCCEEecCCCC--CC-CchH---HH-HHHhc-CCCEEEEcC
Q 038230 306 VGKGAHIVNDVSAG--QL-DPDM---YK-VVAGL-KVPYVAMHM 341 (480)
Q Consensus 306 L~~G~~iINdVsg~--~~-d~~m---~~-l~~~~-~~~vVlmh~ 341 (480)
-+.|+|-+--+.-. .. ++++ ++ ++... +.|+++-+.
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 44588866655331 11 1333 22 33445 588888664
No 472
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=62.02 E-value=1.4e+02 Score=31.82 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL 306 (480)
+..+++.+++.++++++.|..-|-+-+..+.- +.+..+ -.++..+++.|.+. .++ .+.+.+.+|
T Consensus 162 r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~----~~~l~~Ll~~i~~~---~~i~~~r~~~~~p------- 227 (430)
T TIGR01125 162 RSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYR----ESKLVDLLEELGKV---GGIYWIRMHYLYP------- 227 (430)
T ss_pred eecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCC----cccHHHHHHHHHhc---CCccEEEEccCCc-------
Confidence 44679999999999999999777654332211 111001 12455666666653 112 122322221
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHCCCC
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELSGIP 380 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~ 380 (480)
...+++++++.++++ +..+.+..+ |.+. .|.+. +. .+.+.+.++.+.++|..
T Consensus 228 ------------~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~--~~--------~~~~~~~i~~l~~~~~~ 285 (430)
T TIGR01125 228 ------------DELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRP--GS--------GEQQLDFIERLREKCPD 285 (430)
T ss_pred ------------ccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCC--CC--------HHHHHHHHHHHHHhCCC
Confidence 122577888888875 455544432 2222 22221 11 13345677777777532
Q ss_pred CCCEEEecCCCC-ccChhHHHHHHH
Q 038230 381 AWRIIIDPGLGF-SKKAEHNLDILL 404 (480)
Q Consensus 381 ~~~IilDPgiGf-~k~~~~~~~~lr 404 (480)
-.|-.|=-+|| +.+.++-.++++
T Consensus 286 -i~i~~~~I~G~PgET~e~~~~t~~ 309 (430)
T TIGR01125 286 -AVLRTTFIVGFPGETEEDFQELLD 309 (430)
T ss_pred -CeEeEEEEEECCCCCHHHHHHHHH
Confidence 12445655677 555544333333
No 473
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=61.99 E-value=26 Score=36.61 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
.++++.+.++|...+-|++|.--|..+...+.++-||. ..++.+++.| |+. |.-.+..++
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~-~~p~~~viaG--------NV~-----------T~e~a~~Li 168 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE-AFPEHTIMAG--------NVV-----------TGEMVEELI 168 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh-hCCCCeEEEe--------ccc-----------CHHHHHHHH
Confidence 47788888887666689999988887765554544554 3567777766 331 112234677
Q ss_pred HcCCcEEEcC
Q 038230 448 LGGANIVRVH 457 (480)
Q Consensus 448 ~~Ga~IlRvH 457 (480)
..|||.++|-
T Consensus 169 ~aGAD~ikVg 178 (343)
T TIGR01305 169 LSGADIVKVG 178 (343)
T ss_pred HcCCCEEEEc
Confidence 8899999954
No 474
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=61.95 E-value=36 Score=33.79 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=58.9
Q ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCchHH---HHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHH
Q 038230 289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDPDMY---KVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVAS 365 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~~m~---~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~ 365 (480)
++.|-=.|.=|..+-+-.+.++.++||.+... +++. .-+.+-|-.|+=+|+ |+|. ++.
T Consensus 30 dvviYAGSLV~~elL~~~~~~aei~nSa~~tL--eeIi~~m~~a~~~Gk~VvRLhS-GDps----------------iYg 90 (254)
T COG2875 30 DVVIYAGSLVPPELLEYCRPDAEIVNSASLTL--EEIIDLMVDAVREGKDVVRLHS-GDPS----------------IYG 90 (254)
T ss_pred CEEEECCCcCCHHHHhhcCCCCEEEecCcCCH--HHHHHHHHHHHHcCCeEEEeec-CChh----------------HHH
Confidence 67777788877777777778999999987532 3333 334456788898898 4552 557
Q ss_pred HHHHHHHHHHHCCCCCCCEEEecCC
Q 038230 366 ELYSKVRDAELSGIPAWRIIIDPGL 390 (480)
Q Consensus 366 ~l~~~i~~a~~~Gi~~~~IilDPgi 390 (480)
.+.++++.+.++||+ --+=||+
T Consensus 91 A~~EQm~~L~~~gI~---yevvPGV 112 (254)
T COG2875 91 ALAEQMRELEALGIP---YEVVPGV 112 (254)
T ss_pred HHHHHHHHHHHcCCC---eEEeCCc
Confidence 778999999999997 5566987
No 475
>PRK14847 hypothetical protein; Provisional
Probab=61.79 E-value=41 Score=35.09 Aligned_cols=72 Identities=7% Similarity=0.127 Sum_probs=46.6
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAV 306 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL 306 (480)
|..++.++=++.|+.+.+.|.|.|.+|..+. .++|.+-+..+++... .+ .+. ..++--...+-+++++
T Consensus 48 Gv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~--------s~~e~e~ir~I~~~~~-~~--~~~~i~~~~r~~~~dId~a~ 116 (333)
T PRK14847 48 IEPMDGARKLRLFEQLVAVGLKEIEVAFPSA--------SQTDFDFVRKLIDERR-IP--DDVTIEALTQSRPDLIARTF 116 (333)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeeCCCC--------CHHHHHHHHHHHHhCC-CC--CCcEEEEEecCcHHHHHHHH
Confidence 5668899999999999999999999997432 2355555444443211 00 022 2344555677777888
Q ss_pred HcCC
Q 038230 307 GKGA 310 (480)
Q Consensus 307 ~~G~ 310 (480)
++++
T Consensus 117 e~~~ 120 (333)
T PRK14847 117 EALA 120 (333)
T ss_pred HHhC
Confidence 7744
No 476
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.70 E-value=1.6e+02 Score=28.95 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH
Q 038230 238 SQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS 299 (480)
Q Consensus 238 ~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~ 299 (480)
+.++++.+.||+.+-||.+.- ++.+.+ +.+.+.+. ..+.+|||..+-
T Consensus 89 e~v~~~l~~Ga~kvvigt~a~----------~~~~~l----~~~~~~fg-~~ivvslD~~~g 135 (234)
T PRK13587 89 SQIMDYFAAGINYCIVGTKGI----------QDTDWL----KEMAHTFP-GRIYLSVDAYGE 135 (234)
T ss_pred HHHHHHHHCCCCEEEECchHh----------cCHHHH----HHHHHHcC-CCEEEEEEeeCC
Confidence 357888899999999995321 122223 33333322 258899998664
No 477
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=61.66 E-value=48 Score=34.94 Aligned_cols=75 Identities=21% Similarity=0.211 Sum_probs=46.6
Q ss_pred CccCCHHHHHHHHHHHHHcCCC-EEEeC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH------
Q 038230 228 GKFQSVEAAVSQVRLMISEGAD-MIDIG-AQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS------ 299 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAd-iIDIG-~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~------ 299 (480)
|.+.+.++....++...+.|.+ ++=.= |.|+-|...+-+. .+. .|..+++. .++||.+|+.+.
T Consensus 233 G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~l--dl~----~i~~lk~~---~~~PV~~d~~Hs~G~r~~ 303 (360)
T PRK12595 233 GLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTL--DIS----AVPILKQE---THLPVMVDVTHSTGRRDL 303 (360)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCc--CHH----HHHHHHHH---hCCCEEEeCCCCCcchhh
Confidence 3456889999999999999995 55442 6677763322111 122 34555664 378999998874
Q ss_pred --HHHHHHHHcCCC
Q 038230 300 --KVASEAVGKGAH 311 (480)
Q Consensus 300 --~v~~aaL~~G~~ 311 (480)
..+.+|+..|||
T Consensus 304 ~~~~a~aAva~GAd 317 (360)
T PRK12595 304 LLPTAKAALAIGAD 317 (360)
T ss_pred HHHHHHHHHHcCCC
Confidence 244445555554
No 478
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=61.62 E-value=29 Score=35.96 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHH-----------HHHHHHHHHHHHcCCc-CCCCeEEEeCC--CHHHH
Q 038230 237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKE-----------LERLIPVLEAVLTMPE-MEGKLVSVDTF--YSKVA 302 (480)
Q Consensus 237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE-----------~~rl~~vi~~l~~~~~-~~~~pISIDT~--~~~v~ 302 (480)
.+.|+.+.+.|+|.|||++ +.|......|.. ..+-.+..+.|.+... ..++||..+.- ++..+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg---~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di 269 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAG---AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDV 269 (333)
T ss_pred HHHHHHHHHcCCCEEEECC---CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHH
Q ss_pred HHHHHcCCCEE
Q 038230 303 SEAVGKGAHIV 313 (480)
Q Consensus 303 ~aaL~~G~~iI 313 (480)
.+||..||+.+
T Consensus 270 ~kaLalGAd~V 280 (333)
T TIGR02151 270 AKAIALGADAV 280 (333)
T ss_pred HHHHHhCCCee
No 479
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=61.08 E-value=1.4e+02 Score=30.28 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred CcEEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCC
Q 038230 210 KTSVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISE-GADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEME 288 (480)
Q Consensus 210 ~~~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~-GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~ 288 (480)
+.+.+|..++.| .+.+.|.+..++.+++ |..-+=+......+... -.|+.|+.+...+.
T Consensus 97 pdrf~~~~~v~p---------~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~-------~~~~~pi~~~a~~~---- 156 (293)
T COG2159 97 PDRFVGFARVDP---------RDPEAAAEELERRVRELGFVGVKLHPVAQGFYPD-------DPRLYPIYEAAEEL---- 156 (293)
T ss_pred CcceeeeeeeCC---------CchHHHHHHHHHHHHhcCceEEEecccccCCCCC-------ChHHHHHHHHHHHc----
Q ss_pred CCeEEEeCCCHHHHHHHHHcCCCEEecCCCCCCCc------hHHHHHHhc-CCCEEEEcCCCCCCccccccccchhhHHH
Q 038230 289 GKLVSVDTFYSKVASEAVGKGAHIVNDVSAGQLDP------DMYKVVAGL-KVPYVAMHMRGDPSTMQNEENLQYDDVCK 361 (480)
Q Consensus 289 ~~pISIDT~~~~v~~aaL~~G~~iINdVsg~~~d~------~m~~l~~~~-~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ 361 (480)
++||.| +.=++..+..... .+..++.++ +.++|+.|+...+
T Consensus 157 gvpv~i----------------htG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~---------------- 204 (293)
T COG2159 157 GVPVVI----------------HTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDY---------------- 204 (293)
T ss_pred CCCEEE----------------EeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCC----------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEe
Q 038230 362 QVASELYSKVRDAELSGIPAWRIIID 387 (480)
Q Consensus 362 ev~~~l~~~i~~a~~~Gi~~~~IilD 387 (480)
-+..+.+..+ -...++++|
T Consensus 205 ---p~~~~a~~~a----~~~~nvy~d 223 (293)
T COG2159 205 ---PWELEAIELA----YAHPNVYLD 223 (293)
T ss_pred ---chhHHHHHHH----HhCCCceee
No 480
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=61.00 E-value=16 Score=35.76 Aligned_cols=97 Identities=24% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeC--CCHH------------HH
Q 038230 237 VSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDT--FYSK------------VA 302 (480)
Q Consensus 237 ~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT--~~~~------------v~ 302 (480)
+..+++.++.|||-||+-.--..-++. ..++.++.+..++++.++. ++|+-+-. +..+ ..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~--~~~~~~~~i~~v~~~~~~~----gl~vIlE~~l~~~~~~~~~~~~~I~~a~ 152 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG--NEDEVIEEIAAVVEECHKY----GLKVILEPYLRGEEVADEKKPDLIARAA 152 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT--HHHHHHHHHHHHHHHHHTS----EEEEEEEECECHHHBSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccc--cHHHHHHHHHHHHHHHhcC----CcEEEEEEecCchhhcccccHHHHHHHH
Confidence 678899999999999997521000111 1344556666666666644 67766642 2222 34
Q ss_pred HHHHHcCCCEEecCCCCCC------CchHHHHHHhcCCC----EEEE
Q 038230 303 SEAVGKGAHIVNDVSAGQL------DPDMYKVVAGLKVP----YVAM 339 (480)
Q Consensus 303 ~aaL~~G~~iINdVsg~~~------d~~m~~l~~~~~~~----vVlm 339 (480)
+.|.+.|+|+|---++... ...|.+++..+.+| |++.
T Consensus 153 ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s 199 (236)
T PF01791_consen 153 RIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS 199 (236)
T ss_dssp HHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE
T ss_pred HHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe
Confidence 4556679999986666110 14577888888888 7663
No 481
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=60.85 E-value=2.1e+02 Score=29.55 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=70.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC----CHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF----YSKVASE 304 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~----~~~v~~a 304 (480)
..++.+++.+.+.++.+.|...|.+.| ..|... .+ +..+++.+++. ++.+.|-|. +.+.++.
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~G--GEPll~-----~~---~~~ii~~~~~~----g~~~~l~TNG~ll~~e~~~~ 100 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSG--GEPLAR-----PD---LVELVAHARRL----GLYTNLITSGVGLTEARLDA 100 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeC--cccccc-----cc---HHHHHHHHHHc----CCeEEEEeCCccCCHHHHHH
Confidence 346777777777777778887777754 223221 11 33445555553 555666553 3566666
Q ss_pred HHHcCCCEE-ecCCCCCC-------------C--chHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHH
Q 038230 305 AVGKGAHIV-NDVSAGQL-------------D--PDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELY 368 (480)
Q Consensus 305 aL~~G~~iI-NdVsg~~~-------------d--~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~ 368 (480)
-.+.|.+.| -|+.|.+. + -+.++.++++|..+.+...- ...+ ...+.
T Consensus 101 L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~N----------------~~~l~ 163 (358)
T TIGR02109 101 LADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRHN----------------IDQIP 163 (358)
T ss_pred HHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccCC----------------HHHHH
Confidence 566676644 34444321 0 12345667788876654321 0111 13456
Q ss_pred HHHHHHHHCCCCCCCEEEec
Q 038230 369 SKVRDAELSGIPAWRIIIDP 388 (480)
Q Consensus 369 ~~i~~a~~~Gi~~~~IilDP 388 (480)
+.++.+.+.|++ .+.+.|
T Consensus 164 ~~~~~~~~lg~~--~i~~~~ 181 (358)
T TIGR02109 164 EIIELAIELGAD--RVELAT 181 (358)
T ss_pred HHHHHHHHcCCC--EEEEEe
Confidence 677788888987 555543
No 482
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=60.59 E-value=1.4e+02 Score=30.29 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC---------chHHHHHHhcC-CCEEEE
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD---------PDMYKVVAGLK-VPYVAM 339 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d---------~~m~~l~~~~~-~~vVlm 339 (480)
+..+++..++. --..-.++.++.+.+++.+++ +.++|-.++-...+ +.+..++.+++ +||++-
T Consensus 4 ~~~~l~~A~~~---~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lh 80 (282)
T TIGR01859 4 GKEILQKAKKE---GYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALH 80 (282)
T ss_pred HHHHHHHHHHC---CceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEE
Q ss_pred cCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 340 HMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 340 h~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
-+.|.. .+.+..+.+.|++ -|.+|. ...+.++|++..+++ +..|.++
T Consensus 81 lDH~~~----------------------~e~i~~ai~~Gf~--sVmid~---s~l~~~eni~~t~~v~~~a~~~gv~V 131 (282)
T TIGR01859 81 LDHGSS----------------------YESCIKAIKAGFS--SVMIDG---SHLPFEENLALTKKVVEIAHAKGVSV 131 (282)
T ss_pred CCCCCC----------------------HHHHHHHHHcCCC--EEEECC---CCCCHHHHHHHHHHHHHHHHHcCCEE
No 483
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=60.54 E-value=30 Score=31.27 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEecCCC---CCC--CchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHH
Q 038230 299 SKVASEAVGKGAHIVNDVSA---GQL--DPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRD 373 (480)
Q Consensus 299 ~~v~~aaL~~G~~iINdVsg---~~~--d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~ 373 (480)
.+++++|.+.++++|- +|+ ... -+++.+.+++.+..-+.+--.|.+..+++ .+.+..++
T Consensus 42 e~~v~aa~~~~adiVg-lS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~---------------d~~~~~~~ 105 (134)
T TIGR01501 42 EEFIKAAIETKADAIL-VSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQ---------------DFPDVEKR 105 (134)
T ss_pred HHHHHHHHHcCCCEEE-EecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChh---------------hhHHHHHH
Confidence 3455566666677654 333 221 15677777777653222222454332211 12233456
Q ss_pred HHHCCCCCCCEEEecCCCC
Q 038230 374 AELSGIPAWRIIIDPGLGF 392 (480)
Q Consensus 374 a~~~Gi~~~~IilDPgiGf 392 (480)
+++.|++ =+|+||..+
T Consensus 106 l~~~Gv~---~vF~pgt~~ 121 (134)
T TIGR01501 106 FKEMGFD---RVFAPGTPP 121 (134)
T ss_pred HHHcCCC---EEECcCCCH
Confidence 7889995 588988743
No 484
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=60.49 E-value=1.7e+02 Score=31.90 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=75.1
Q ss_pred CccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHH-HHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHH
Q 038230 228 GKFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAE-KELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEA 305 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~-eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aa 305 (480)
-+..+++.+++.++.+++.|+.-|-+-++.+.- +...-+.. ....++..+++.+.+.. .+..|.+-+.+|.
T Consensus 194 ~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~--~~~~ir~~~~~p~----- 266 (467)
T PRK14329 194 ERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV--PDMRIRFSTSHPK----- 266 (467)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC--CCcEEEEecCCcc-----
Confidence 356789999999999999998766433222110 00000000 00113444455555431 1334555444432
Q ss_pred HHcCCCEEecCCCCCCCchHHHHHHhc--CCCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 306 VGKGAHIVNDVSAGQLDPDMYKVVAGL--KVPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 306 L~~G~~iINdVsg~~~d~~m~~l~~~~--~~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
..+++++++.+++ +|..+-+..+ |.+. .|.+. |. . +.+.+.++++.+++
T Consensus 267 --------------~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~----~t--~----~~~~~~i~~ir~~~- 321 (467)
T PRK14329 267 --------------DMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRK----YT--R----EWYLDRIDAIRRII- 321 (467)
T ss_pred --------------cCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCC----CC--H----HHHHHHHHHHHHhC-
Confidence 1246888888887 6788877653 3332 33332 11 1 23446666666653
Q ss_pred CCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 380 PAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 380 ~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
+.-.|-.|=.+|| +.+.++-.++++-+
T Consensus 322 ~~~~i~~d~IvGfPgET~edf~~tl~~i 349 (467)
T PRK14329 322 PDCGISTDMIAGFPTETEEDHQDTLSLM 349 (467)
T ss_pred CCCEEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 2123666766787 55555443444433
No 485
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=60.49 E-value=1.2e+02 Score=32.21 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MATKISAEKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVASEAV 306 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~aaL 306 (480)
+..+++++++.++.+++.|+.-|-+-++.+.- |.+ ... ..++..+++.+.+. .++ .+.+-|.+|.
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d-~~~---~~~l~~Ll~~l~~~---~g~~~i~~~~~~p~------ 232 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKD-LKG---ETNLADLLRELSKI---DGIERIRFGSSHPD------ 232 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCC-CCC---CcCHHHHHHHHhcC---CCCCEEEECCCChh------
Confidence 55789999999999999999877554432211 111 000 01244445555543 121 2444333321
Q ss_pred HcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCCC---ccccccccchhhHHHHHHHHHHHHHHHHHHCC--
Q 038230 307 GKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDPS---TMQNEENLQYDDVCKQVASELYSKVRDAELSG-- 378 (480)
Q Consensus 307 ~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p~---~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~G-- 378 (480)
..+++++++.++++ +..+-+..+ |.+. .|.+. +. .+.+.+.++.+.++|
T Consensus 233 -------------~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~--~~--------~~~~~~~i~~lr~~~~~ 289 (429)
T TIGR00089 233 -------------DVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRK--YT--------REEYLDIVEKIRAKIPD 289 (429)
T ss_pred -------------hcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCC--CC--------HHHHHHHHHHHHHHCCC
Confidence 12567788888774 666655432 2232 22221 11 134457777888887
Q ss_pred CCCCCEEEecCCCC-ccChhHHHHHHHhc
Q 038230 379 IPAWRIIIDPGLGF-SKKAEHNLDILLGL 406 (480)
Q Consensus 379 i~~~~IilDPgiGf-~k~~~~~~~~lr~l 406 (480)
+ .+..|=.+|| +.+.++-.++++-+
T Consensus 290 i---~i~~~~IvG~PgET~ed~~~tl~~i 315 (429)
T TIGR00089 290 A---AITTDIIVGFPGETEEDFEETLDLV 315 (429)
T ss_pred C---EEEeeEEEECCCCCHHHHHHHHHHH
Confidence 5 3666666787 56655544444443
No 486
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=60.07 E-value=17 Score=37.10 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHH
Q 038230 216 ILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIP 276 (480)
Q Consensus 216 IlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~ 276 (480)
+||.-=|+|.-+ ...|++++|++.+.++|||.|=+-+. ....+|+.++..
T Consensus 151 ~I~ARTDa~~~~---~g~deAI~Ra~aY~eAGAD~ifv~~~--------~~~~~ei~~~~~ 200 (290)
T TIGR02321 151 VVIARVEALIAG---LGQQEAVRRGQAYEEAGADAILIHSR--------QKTPDEILAFVK 200 (290)
T ss_pred EEEEEecccccc---CCHHHHHHHHHHHHHcCCCEEEecCC--------CCCHHHHHHHHH
Confidence 677788998433 13489999999999999999998531 112477777643
No 487
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=59.87 E-value=29 Score=36.05 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCc-EEEeeccccccccccCCCCcCcccHHHHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAP-ILIGPSRKRFLGEICNRPSADERDPATIASITAG 446 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~P-il~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a 446 (480)
.+++..+.++|+..+-|++|+-.|..+...+.++-+++ ....| ++.| |+ +|...+..+
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~--~~p~~~vi~G--------nV-----------~t~e~a~~l 154 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT--HLPDSFVIAG--------NV-----------GTPEAVREL 154 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH--hCCCCEEEEe--------cC-----------CCHHHHHHH
Confidence 46777888889877789999988877765554444443 33445 5554 22 133445678
Q ss_pred HHcCCcEEEcC
Q 038230 447 VLGGANIVRVH 457 (480)
Q Consensus 447 ~~~Ga~IlRvH 457 (480)
.+.||+.++|+
T Consensus 155 ~~aGad~I~V~ 165 (321)
T TIGR01306 155 ENAGADATKVG 165 (321)
T ss_pred HHcCcCEEEEC
Confidence 88999999998
No 488
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=59.57 E-value=51 Score=34.08 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe---C-CCHHHHH
Q 038230 232 SVEAAVSQVRLMISEGADMIDIGAQS----TRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD---T-FYSKVAS 303 (480)
Q Consensus 232 ~~e~a~~~A~~~v~~GAdiIDIG~eS----trP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID---T-~~~~v~~ 303 (480)
+.+.+.+ +.+++ +||.++|+... ..|.. ..+++.+...|+.+++. .++||.+= + ...+.++
T Consensus 128 ~~~~~~~-~i~~~--~adalel~l~~~q~~~~~~~-----~~df~~~~~~i~~l~~~---~~vPVivK~~g~g~s~~~a~ 196 (326)
T cd02811 128 GVEEARR-AVEMI--EADALAIHLNPLQEAVQPEG-----DRDFRGWLERIEELVKA---LSVPVIVKEVGFGISRETAK 196 (326)
T ss_pred CHHHHHH-HHHhc--CCCcEEEeCcchHhhcCCCC-----CcCHHHHHHHHHHHHHh---cCCCEEEEecCCCCCHHHHH
Confidence 5555443 44444 67777777521 11211 12355556667777765 37888861 1 4567777
Q ss_pred HHHHcCCCEEecCCC
Q 038230 304 EAVGKGAHIVNDVSA 318 (480)
Q Consensus 304 aaL~~G~~iINdVsg 318 (480)
...++|++.|. |+|
T Consensus 197 ~l~~~Gvd~I~-vsG 210 (326)
T cd02811 197 RLADAGVKAID-VAG 210 (326)
T ss_pred HHHHcCCCEEE-ECC
Confidence 77777777765 444
No 489
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=59.56 E-value=12 Score=38.25 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTR-------PMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVAS 303 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStr-------P~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~ 303 (480)
.+++.+.+-|+...+.|+|.||||+.=.- -|+... .+.+.+..+|+++++. .++|||+-++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll---~~p~~~~~iv~~~~~~---~~~pvsvKiR------ 130 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALL---KDPDLLAEIVKAVRKA---VPIPVSVKIR------ 130 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGG---C-HHHHHHHHHHHHHH----SSEEEEEEE------
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhh---cChHHhhHHHHhhhcc---cccceEEecc------
Confidence 46677776666655559999999953111 133333 3566777888888876 4789998764
Q ss_pred HHHHcCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCC
Q 038230 304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~ 342 (480)
.|.+ .....-.++++.+.++|+..+.+|-+
T Consensus 131 ----~g~~-----~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 131 ----LGWD-----DSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp ----SECT-------CHHHHHHHHHHHHTT--EEEEECS
T ss_pred ----cccc-----cchhHHHHHHHHhhhcccceEEEecC
Confidence 2322 00000146778888899999988976
No 490
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=59.52 E-value=1e+02 Score=33.18 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCC--CCCH-HHHHHHHHHHHHHHHcCCcCCCC-eEEEeCCCHHHHH
Q 038230 229 KFQSVEAAVSQVRLMISEGADMIDIGAQSTRP-MAT--KISA-EKELERLIPVLEAVLTMPEMEGK-LVSVDTFYSKVAS 303 (480)
Q Consensus 229 ~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP-~a~--~v~~-~eE~~rl~~vi~~l~~~~~~~~~-pISIDT~~~~v~~ 303 (480)
+..+++++++.++.+.+.|...|-+.++.+.- |.+ ...+ ..-+..+...++.+.+.. ++ .|.+-+.+|..+
T Consensus 175 rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~---~~~rir~~~~~p~~~- 250 (448)
T PRK14333 175 QSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVE---GIERIRFATSHPRYF- 250 (448)
T ss_pred cccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcC---CCeEEEECCCChhhh-
Confidence 34678999999999999999877554332211 000 0000 000123444555555431 22 245544444322
Q ss_pred HHHHcCCCEEecCCCCCCCchHHHHHHhcC--CCEEEEcCC-CCC---CccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 304 EAVGKGAHIVNDVSAGQLDPDMYKVVAGLK--VPYVAMHMR-GDP---STMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 304 aaL~~G~~iINdVsg~~~d~~m~~l~~~~~--~~vVlmh~~-g~p---~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
+++++++.++++ |..+-+..+ |.+ +.|.+. | . .+.+.+.++.+.++
T Consensus 251 ------------------~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~----~--t----~e~~~~~i~~lr~~ 302 (448)
T PRK14333 251 ------------------TERLIKACAELPKVCEHFHIPFQSGDNEILKAMARG----Y--T----HEKYRRIIDKIREY 302 (448)
T ss_pred ------------------hHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCC----C--C----HHHHHHHHHHHHHh
Confidence 456677777653 444433222 111 122221 1 0 13455777788777
Q ss_pred --CCCCCCEEEecCCCC-ccChhHHHHHHHh
Q 038230 378 --GIPAWRIIIDPGLGF-SKKAEHNLDILLG 405 (480)
Q Consensus 378 --Gi~~~~IilDPgiGf-~k~~~~~~~~lr~ 405 (480)
|+ .|-.|=-+|| +.+.++-.++++-
T Consensus 303 ~p~i---~i~~d~IvGfPgET~edf~~tl~~ 330 (448)
T PRK14333 303 MPDA---SISADAIVGFPGETEAQFENTLKL 330 (448)
T ss_pred CCCc---EEEeeEEEECCCCCHHHHHHHHHH
Confidence 44 3777777787 5555443333333
No 491
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.01 E-value=85 Score=30.88 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCC--------------------
Q 038230 239 QVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFY-------------------- 298 (480)
Q Consensus 239 ~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~-------------------- 298 (480)
.++++.+.||+.+.+|...- +..+.+..+.+.+-+ ..+.+|+|.++
T Consensus 88 ~~~~~l~~Ga~~Viigt~~l----------~~p~~~~ei~~~~g~----~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~ 153 (253)
T PRK02083 88 DARRLLRAGADKVSINSAAV----------ANPELISEAADRFGS----QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGL 153 (253)
T ss_pred HHHHHHHcCCCEEEEChhHh----------hCcHHHHHHHHHcCC----CCEEEEEEeccCCCCCCEEEEEcCCceecCC
Confidence 45666678999999995321 112222222333211 25788998542
Q ss_pred --HHHHHHHHHcCCC--EEecCCC-CC---CCch-HHHHHHhcCCCEEEE
Q 038230 299 --SKVASEAVGKGAH--IVNDVSA-GQ---LDPD-MYKVVAGLKVPYVAM 339 (480)
Q Consensus 299 --~~v~~aaL~~G~~--iINdVsg-~~---~d~~-m~~l~~~~~~~vVlm 339 (480)
.+.++++.+.|++ ++.+++. +. .+-+ +-++++..+.|++..
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~ 203 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIAS 203 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEE
Confidence 2455666677876 4666552 11 1222 344444457787763
No 492
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=58.93 E-value=85 Score=35.38 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=55.7
Q ss_pred EEEEEEecCCCCCCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCe
Q 038230 212 SVMGILNLTPDSFSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKL 291 (480)
Q Consensus 212 ~imGIlN~tpDSFsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~p 291 (480)
.+.|.+..|- .. ..+.+..++.|+++.+.|||+|-|-= |.- ... .+++.++ ++.|++. .++|
T Consensus 139 ~~~~~i~yt~-----~p-~~~~~~~~~~a~~l~~~Gad~i~i~D--t~G---~l~-P~~~~~l---v~~lk~~---~~~p 200 (593)
T PRK14040 139 HAQGTLSYTT-----SP-VHTLQTWVDLAKQLEDMGVDSLCIKD--MAG---LLK-PYAAYEL---VSRIKKR---VDVP 200 (593)
T ss_pred eEEEEEEEee-----CC-ccCHHHHHHHHHHHHHcCCCEEEECC--CCC---CcC-HHHHHHH---HHHHHHh---cCCe
Confidence 4566665442 11 34789999999999999999997751 111 111 2445554 5566665 3789
Q ss_pred EEEeCC---C--HHHHHHHHHcCCCEEec
Q 038230 292 VSVDTF---Y--SKVASEAVGKGAHIVND 315 (480)
Q Consensus 292 ISIDT~---~--~~v~~aaL~~G~~iINd 315 (480)
|.+=|= - .....+|+++|+++|..
T Consensus 201 i~~H~Hnt~GlA~An~laAieAGa~~vD~ 229 (593)
T PRK14040 201 LHLHCHATTGLSTATLLKAIEAGIDGVDT 229 (593)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCEEEe
Confidence 999543 3 34556789999999863
No 493
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=58.86 E-value=69 Score=31.83 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCC-CeEEE---eCCCHH--HHHH
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEG-KLVSV---DTFYSK--VASE 304 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~-~pISI---DT~~~~--v~~a 304 (480)
.+++..++.++++.+.|||.|=+. . |.- +-..+++.++ ++.+++.. + +||++ |++--. -+.+
T Consensus 138 ~~~~~~~~~~~~~~~~G~d~i~l~-D-T~G----~~~P~~v~~l---v~~l~~~~---~~~~l~~H~Hn~~GlA~AN~la 205 (263)
T cd07943 138 ASPEELAEQAKLMESYGADCVYVT-D-SAG----AMLPDDVRER---VRALREAL---DPTPVGFHGHNNLGLAVANSLA 205 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc-C-CCC----CcCHHHHHHH---HHHHHHhC---CCceEEEEecCCcchHHHHHHH
Confidence 578999999999999999998774 1 111 1122455554 55556553 4 48888 454433 4567
Q ss_pred HHHcCCCEEecC
Q 038230 305 AVGKGAHIVNDV 316 (480)
Q Consensus 305 aL~~G~~iINdV 316 (480)
|+++|+++|..-
T Consensus 206 Ai~aGa~~vd~s 217 (263)
T cd07943 206 AVEAGATRIDGS 217 (263)
T ss_pred HHHhCCCEEEee
Confidence 888999998743
No 494
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=58.80 E-value=27 Score=35.20 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=65.2
Q ss_pred HHHHHHcCCCEEEeC---------CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEe-------CCCHHHHH
Q 038230 240 VRLMISEGADMIDIG---------AQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVD-------TFYSKVAS 303 (480)
Q Consensus 240 A~~~v~~GAdiIDIG---------~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISID-------T~~~~v~~ 303 (480)
|+-.-++|.|+|=|| -+||.| |+- +.++...+.+++-. .+..|..| ....+.++
T Consensus 29 A~~~d~agvD~iLVGDSlgmv~~G~~sT~~----vtl----d~mi~h~~aV~Rga--~~~~vv~DmPf~sy~~s~e~av~ 98 (261)
T PF02548_consen 29 ARIADEAGVDIILVGDSLGMVVLGYDSTLP----VTL----DEMIYHTKAVRRGA--PNAFVVADMPFGSYQASPEQAVR 98 (261)
T ss_dssp HHHHHHTT-SEEEE-TTHHHHTT--SSSTT------H----HHHHHHHHHHHHH---TSSEEEEE--TTSSTSSHHHHHH
T ss_pred HHHHHHcCCCEEEeCCcHHHheeCCCCCcC----cCH----HHHHHHHHHHHhcC--CCceEEecCCcccccCCHHHHHH
Confidence 455567899999998 245444 554 33333444444321 24456666 23344444
Q ss_pred HH---HH-cCCCEEecCCCCCCCchHHHHHHhcCCCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCC
Q 038230 304 EA---VG-KGAHIVNDVSAGQLDPDMYKVVAGLKVPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGI 379 (480)
Q Consensus 304 aa---L~-~G~~iINdVsg~~~d~~m~~l~~~~~~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi 379 (480)
.| ++ .|++.+- +.|+....+.++.+.+.|+||+. |..=+|++....-.+.-.---.+-...+.+....++++|.
T Consensus 99 nA~rl~ke~GadaVK-lEGg~~~~~~i~~l~~~GIPV~g-HiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGa 176 (261)
T PF02548_consen 99 NAGRLMKEAGADAVK-LEGGAEIAETIKALVDAGIPVMG-HIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGA 176 (261)
T ss_dssp HHHHHHHTTT-SEEE-EEBSGGGHHHHHHHHHTT--EEE-EEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcCCCEEE-eccchhHHHHHHHHHHCCCcEEE-EecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCc
Confidence 44 34 5999997 55554335667777788999986 5533565543211110000001112344455666788898
Q ss_pred CCCCEEEe
Q 038230 380 PAWRIIID 387 (480)
Q Consensus 380 ~~~~IilD 387 (480)
- -|++.
T Consensus 177 f--~ivlE 182 (261)
T PF02548_consen 177 F--AIVLE 182 (261)
T ss_dssp S--EEEEE
T ss_pred c--EEeee
Confidence 6 56665
No 495
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=58.73 E-value=1.9e+02 Score=28.57 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHcCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGKGA 310 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~G~ 310 (480)
...+++++.+ .+.|+|.|=||| |+ .+ ...+.+...++.+. ++|+-+-=.++..+-.. +-+
T Consensus 19 ~~~~~~~~~~---~~~gtDai~VGG-S~-~~-------~~~d~vv~~ik~~~------~lPvilfPg~~~~vs~~--aDa 78 (230)
T PF01884_consen 19 PNPEEALEAA---CESGTDAIIVGG-SD-TG-------VTLDNVVALIKRVT------DLPVILFPGSPSQVSPG--ADA 78 (230)
T ss_dssp S-HHHHHHHH---HCTT-SEEEEE--ST-HC-------HHHHHHHHHHHHHS------SS-EEEETSTCCG--TT--SSE
T ss_pred CCcHHHHHHH---HhcCCCEEEECC-CC-Cc-------cchHHHHHHHHhcC------CCCEEEeCCChhhcCcC--CCE
Q ss_pred CEEecCCCCCCCch--------HHHHHHhcC-----CCEEEEcCCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHC
Q 038230 311 HIVNDVSAGQLDPD--------MYKVVAGLK-----VPYVAMHMRGDPSTMQNEENLQYDDVCKQVASELYSKVRDAELS 377 (480)
Q Consensus 311 ~iINdVsg~~~d~~--------m~~l~~~~~-----~~vVlmh~~g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~ 377 (480)
=++.++-... +++ -++.+++++ .+||++...+.-..+.+-..-+++.. +......-..+=.
T Consensus 79 il~~svlNs~-n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~-----~iaa~~alA~~~~ 152 (230)
T PF01884_consen 79 ILFPSVLNSR-NPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKP-----EIAAAAALAAEYL 152 (230)
T ss_dssp EEEEEETTBS-STTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHH-----HHHHHHHHHHHHT
T ss_pred EEEEEEecCC-CcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcH-----HHHHHHHHHHHHh
Q ss_pred CCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHHHcCCcEEEcC
Q 038230 378 GIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGVLGGANIVRVH 457 (480)
Q Consensus 378 Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~~~Ga~IlRvH 457 (480)
|.+ =|+++=|-|-.......+.-.++ +..+.|+++| |-. |....+ ..+.+.|||++-|=
T Consensus 153 g~~--~iYLEaGSGa~~~v~~~v~~~~~-~~~~~~LivG-----------GGI----rs~e~A---~~~~~aGAD~IVvG 211 (230)
T PF01884_consen 153 GMP--IIYLEAGSGAYGPVPEEVIAAVK-KLSDIPLIVG-----------GGI----RSPEQA---REMAEAGADTIVVG 211 (230)
T ss_dssp T-S--EEEEE--TTSSS-HHHHHHHHHH-HSSSSEEEEE-----------SS------SHHHH---HHHHCTTSSEEEES
T ss_pred CCC--EEEEEeCCCCCCCccHHHHHHHH-hcCCccEEEe-----------CCc----CCHHHH---HHHHHCCCCEEEEC
Q ss_pred ChHHHHH----HHHHHHHH
Q 038230 458 NIRDNLD----AVKLCDSM 472 (480)
Q Consensus 458 dV~e~~~----al~~~~ai 472 (480)
++-|-.. +++...++
T Consensus 212 n~iee~~~~e~~~~~i~a~ 230 (230)
T PF01884_consen 212 NAIEEDPDLEEALETIKAV 230 (230)
T ss_dssp CHHHHHH-HHHHHTHHHHH
T ss_pred CEEEEcchHHHHHHHHhhC
No 496
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=58.62 E-value=73 Score=32.24 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=53.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEE---eCCCHH
Q 038230 224 FSDGGKFQSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSV---DTFYSK 300 (480)
Q Consensus 224 Fsdgg~~~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISI---DT~~~~ 300 (480)
|+..-+ .+++..++.++++.+.||+.|-+.= |-- ...+ +++.++ ++.+++.. .+++|++ ||+--.
T Consensus 138 ~~~~~r-~~~~~~~~~~~~~~~~G~~~i~l~D--T~G---~~~P-~~v~~l---~~~l~~~~--~~~~i~~H~Hnd~Gla 205 (280)
T cd07945 138 WSNGMR-DSPDYVFQLVDFLSDLPIKRIMLPD--TLG---ILSP-FETYTY---ISDMVKRY--PNLHFDFHAHNDYDLA 205 (280)
T ss_pred CCCCCc-CCHHHHHHHHHHHHHcCCCEEEecC--CCC---CCCH-HHHHHH---HHHHHhhC--CCCeEEEEeCCCCCHH
Confidence 554443 5789999999999999999987752 111 1122 445554 45555542 3688998 454444
Q ss_pred --HHHHHHHcCCCEEecCC
Q 038230 301 --VASEAVGKGAHIVNDVS 317 (480)
Q Consensus 301 --v~~aaL~~G~~iINdVs 317 (480)
-..+|+++|+++|..--
T Consensus 206 ~AN~laA~~aGa~~vd~s~ 224 (280)
T cd07945 206 VANVLAAVKAGIKGLHTTV 224 (280)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 34578889999987433
No 497
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=58.57 E-value=29 Score=36.52 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhcccCCCcEEEeeccccccccccCCCCcCcccHHHHHHHHHHH
Q 038230 368 YSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGLAASHAPILIGPSRKRFLGEICNRPSADERDPATIASITAGV 447 (480)
Q Consensus 368 ~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l~~~g~Pil~G~SrKsfi~~v~g~~~~~~r~~~t~a~~~~a~ 447 (480)
.++++.+.++|++ =|++|--.|........++-+|+ ..+..|++.| |+ +|.-.+-.++
T Consensus 110 ~er~~~L~~agvD--~ivID~a~g~s~~~~~~ik~ik~-~~~~~~viaG--------NV-----------~T~e~a~~L~ 167 (352)
T PF00478_consen 110 FERAEALVEAGVD--VIVIDSAHGHSEHVIDMIKKIKK-KFPDVPVIAG--------NV-----------VTYEGAKDLI 167 (352)
T ss_dssp HHHHHHHHHTT-S--EEEEE-SSTTSHHHHHHHHHHHH-HSTTSEEEEE--------EE------------SHHHHHHHH
T ss_pred HHHHHHHHHcCCC--EEEccccCccHHHHHHHHHHHHH-hCCCceEEec--------cc-----------CCHHHHHHHH
Confidence 3677778889996 89999877776655444444443 3567899987 43 2223345678
Q ss_pred HcCCcEEEcC
Q 038230 448 LGGANIVRVH 457 (480)
Q Consensus 448 ~~Ga~IlRvH 457 (480)
..|||.+||=
T Consensus 168 ~aGad~vkVG 177 (352)
T PF00478_consen 168 DAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEES
T ss_pred HcCCCEEEEe
Confidence 8999999984
No 498
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=58.28 E-value=10 Score=38.28 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCC
Q 038230 231 QSVEAAVSQVRLMISEGADMIDIGAQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTF 297 (480)
Q Consensus 231 ~~~e~a~~~A~~~v~~GAdiIDIG~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~ 297 (480)
.+++++.+.|.+..++||.++=+=+--...|. +.-..+.+..+++.|++.. ++++|.+=|-
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~----~s~d~~~~~e~~~~IR~~~--pd~iv~~Ttg 83 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHARDDEDGR----PSLDPELYAEVVEAIRAAC--PDLIVQPTTG 83 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-----EE--HHHHHHHHHHHHHHS--TTSEEEEESS
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecCCCCCCC----cCCCHHHHHHHHHHHHHHC--CCeEEEeCCC
Confidence 68899999999999999999988753111222 1234667777888888763 4777776543
No 499
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.12 E-value=43 Score=33.55 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=47.0
Q ss_pred CccCCHHHHHHHHHHHHHcCCC-EEEeC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCcCCCCeEEEeCCCH------
Q 038230 228 GKFQSVEAAVSQVRLMISEGAD-MIDIG-AQSTRPMATKISAEKELERLIPVLEAVLTMPEMEGKLVSVDTFYS------ 299 (480)
Q Consensus 228 g~~~~~e~a~~~A~~~v~~GAd-iIDIG-~eStrP~a~~v~~~eE~~rl~~vi~~l~~~~~~~~~pISIDT~~~------ 299 (480)
|.+.++++.+..++++.+.|.. ++=.= |-||-|....- ..+ .+.+..+++. .++||.+|.++.
T Consensus 130 G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n----~~d--l~ai~~lk~~---~~lPVivd~SHs~G~r~~ 200 (250)
T PRK13397 130 GLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRN----MLD--IMAVPIIQQK---TDLPIIVDVSHSTGRRDL 200 (250)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCcccc----ccC--HHHHHHHHHH---hCCCeEECCCCCCcccch
Confidence 4567899999999999999995 44442 44777643210 111 1234444554 378999997773
Q ss_pred --HHHHHHHHcCCC
Q 038230 300 --KVASEAVGKGAH 311 (480)
Q Consensus 300 --~v~~aaL~~G~~ 311 (480)
.++.+|+..||+
T Consensus 201 v~~~a~AAvA~GAd 214 (250)
T PRK13397 201 LLPAAKIAKAVGAN 214 (250)
T ss_pred HHHHHHHHHHhCCC
Confidence 455556656666
No 500
>PLN02858 fructose-bisphosphate aldolase
Probab=58.08 E-value=1.7e+02 Score=36.55 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCcCCCCeEEEeCCCHHHHHHHHHc----CCCEEecCCCCCCC-------chHHHHHHhcCCCEEEEcCC
Q 038230 274 LIPVLEAVLTMPEMEGKLVSVDTFYSKVASEAVGK----GAHIVNDVSAGQLD-------PDMYKVVAGLKVPYVAMHMR 342 (480)
Q Consensus 274 l~~vi~~l~~~~~~~~~pISIDT~~~~v~~aaL~~----G~~iINdVsg~~~d-------~~m~~l~~~~~~~vVlmh~~ 342 (480)
+..+++..++.. -..-+++.++.+.+++.+++ +.++|-.++-.... +-+..+++++.+||++--+.
T Consensus 1102 ~~~~l~~A~~~~---yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLDH 1178 (1378)
T PLN02858 1102 TKELLLNAEKGG---YAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHFDH 1178 (1378)
T ss_pred HHHHHHHHHHCC---cEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344455555541 36789999999998888875 89998888753311 12456777889998874344
Q ss_pred CCCCccccccccchhhHHHHHHHHHHHHHHHHHHCCCCCCCEEEecCCCCccChhHHHHHHHhc----ccCCCcE
Q 038230 343 GDPSTMQNEENLQYDDVCKQVASELYSKVRDAELSGIPAWRIIIDPGLGFSKKAEHNLDILLGL----AASHAPI 413 (480)
Q Consensus 343 g~p~~~~~~~~~~~~~v~~ev~~~l~~~i~~a~~~Gi~~~~IilDPgiGf~k~~~~~~~~lr~l----~~~g~Pi 413 (480)
|.. .+.+.+|.+.|++ -|-+| |-.-..++|++.-|++ +..|+++
T Consensus 1179 g~~----------------------~~~i~~ai~~Gf~--SVM~D---gS~l~~eeNi~~t~~vv~~Ah~~gv~V 1226 (1378)
T PLN02858 1179 GTS----------------------KHELLEALELGFD--SVMVD---GSHLSFTENISYTKSISSLAHSKGLMV 1226 (1378)
T ss_pred CCC----------------------HHHHHHHHHhCCC--EEEEe---CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 321 1445667778997 89999 4445667888777776 3456665
Done!