Your job contains 1 sequence.
>038232
CKASSRKKIQDFASDLIVSWRNMSLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSEECQE
ISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVC
DALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPK
NPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038232
(217 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 284 5.9e-25 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 221 3.7e-17 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 203 2.3e-16 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 166 6.9e-12 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 165 8.9e-12 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 162 1.9e-11 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 162 1.9e-11 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 162 1.9e-11 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 144 5.7e-10 2
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 154 8.5e-10 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 146 1.5e-09 2
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 144 2.3e-09 2
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 152 2.4e-09 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 150 3.6e-09 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 142 4.2e-09 2
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 145 5.4e-09 2
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 149 5.9e-09 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 147 8.0e-09 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 147 1.0e-08 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 137 1.2e-08 2
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 146 1.5e-08 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 130 1.5e-08 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 145 2.0e-08 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 150 6.8e-08 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 147 1.8e-07 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 143 1.9e-07 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 130 2.3e-07 2
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 131 2.3e-07 2
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 128 2.3e-07 2
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 128 2.3e-07 2
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 124 2.5e-07 2
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 136 3.2e-07 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 127 3.7e-07 2
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 115 8.8e-07 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 131 1.5e-06 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 136 1.9e-06 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 140 2.0e-06 2
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 126 2.3e-06 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 136 2.4e-06 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 119 2.5e-06 2
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 136 2.7e-06 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 138 3.2e-06 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 138 3.2e-06 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 136 5.1e-06 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 136 5.1e-06 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 119 2.1e-05 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 114 2.9e-05 2
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 128 3.9e-05 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 115 5.1e-05 2
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 116 6.5e-05 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 122 0.00013 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 121 0.00018 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 119 0.00025 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 116 0.00032 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 125 0.00064 2
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 113 0.00087 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 108 0.00090 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 65/182 (35%), Positives = 111/182 (60%)
Query: 43 EPAKIEKVDKRTSEECQEISGVGI------VKVQ---KVDQNATSLSSNVVRPESVVTEK 93
+ AK KV+++ + + ++GV I +KV K+D ++ V ++ + K
Sbjct: 130 DSAKSIKVERKEPDN-KVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDNQSSMK 188
Query: 94 T-----NSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAI 148
N+ L+ +M++CND R+ +RE + +AL +V+GEAD+ R+ VNA D +RVA+
Sbjct: 189 APAKAANAPPKLT-AMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAV 247
Query: 149 ALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAG 208
++ES MFEK R G K+KY++++ NL+D NPD RR V G++ PE ++ ++A++MA
Sbjct: 248 SVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMAS 307
Query: 209 DK 210
DK
Sbjct: 308 DK 309
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 221 (82.9 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 48/116 (41%), Positives = 72/116 (62%)
Query: 103 SMIRCNDCFREVVREKVCDALSKVSGE-ADEEIRDEVNACDSVRVAIALESAMFEKWDRY 161
+M + D R+ VRE + +L KV+ E D E++ V ACD VA+++ESAMFEK +
Sbjct: 598 TMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCF 657
Query: 162 DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
GP+K KY+++L N+ D NPD RR V +G++ E +V M +EM +K+ QR
Sbjct: 658 MGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 103 SMIRCNDCFREVVREKVCDALSKVSGEA-DEEIRDEVNACDSVRVAIALESAMFEKWDRY 161
+M + D R+ VRE + +L+KV+ E D E++ V ACD VA+++E+AMFE +
Sbjct: 109 TMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCF 168
Query: 162 DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEM 206
GP K KY+++L N+ D NPD RR V LG++ E +V M +EM
Sbjct: 169 MGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEM 213
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 166 (63.5 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 45/136 (33%), Positives = 76/136 (55%)
Query: 81 SNVVRPESVVTEKTNSSDN---LSRSMIRCNDCFR--EVVREKVCDALSKVSGEADEEIR 135
SN R + V T KT SS + + ++ C+ + VR+K + LS +A+++ +
Sbjct: 149 SNSSRSK-VETPKTPSSPSTPTFAPAVCLLASCYLTGDSVRDKCVEMLSAAL-KAEDDFK 206
Query: 136 DEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKP 195
D CD ++A +E ++++ D Y+ + ++ + NLKDP+NP RRNV G + P
Sbjct: 207 DYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISP 264
Query: 196 ETIVGMTAKEMAGDKM 211
E I MTA+EMA D++
Sbjct: 265 ELIAKMTAEEMASDEL 280
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 165 (63.1 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 40/134 (29%), Positives = 74/134 (55%)
Query: 80 SSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFR--EVVREKVCDALSKVSGEADEEIRDE 137
+S+ + E+ T + S+ + ++ C+ + VR+K + LS +A++ +D
Sbjct: 149 NSSKSKVETPTTPSSPSTPTFAPAVCLLAPCYLTGDSVRDKCVEMLSAAL-KAEDNFKDY 207
Query: 138 VNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
CD ++A +E ++++ D Y+ + ++ + NLKDP+NP RRNV G + PE
Sbjct: 208 GVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPEL 265
Query: 198 IVGMTAKEMAGDKM 211
I MTA+EMA D++
Sbjct: 266 IAKMTAEEMASDEL 279
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 162 (62.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 48/166 (28%), Positives = 86/166 (51%)
Query: 48 EKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRC 107
E D+R S + + S K ++++ +S S + E+ T + SS + S+
Sbjct: 124 EPKDRRDSVDSKS-SATSSPKRPSMERSNSSKS----KAETPRTPSSPSSPTFAPSVCLL 178
Query: 108 NDCFR--EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPY 165
C+ + VR+K + LS +AD++ +D CD ++A +E ++++ D Y
Sbjct: 179 APCYLTGDSVRDKCVEMLSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKY 235
Query: 166 KIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ + ++ + NLKDP+NP RRNV G + I MTA+EMA D++
Sbjct: 236 RNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 281
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 162 (62.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 48/174 (27%), Positives = 88/174 (50%)
Query: 42 IEPAKIEKVDKRTSEEC--QEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDN 99
+ P + ++ D +T + + S K V+++ +S S + ES T + +
Sbjct: 114 LSPPRKKREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKS----KAESPKTPSSPLTPT 169
Query: 100 LSRSMIRCNDCFR--EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEK 157
+ SM C+ + VR+K + LS +AD++ +D CD ++A +E ++++
Sbjct: 170 FASSMCLLAPCYLTGDSVRDKCVEMLSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQE 226
Query: 158 WDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
D Y+ + ++ + NLKDP+NP RRNV G + I MTA+EMA D++
Sbjct: 227 LKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 280
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 162 (62.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 48/166 (28%), Positives = 86/166 (51%)
Query: 48 EKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRC 107
E D+R S + + S K ++++ +S S + E+ T + SS + S+
Sbjct: 124 EPKDRRDSVDSKS-SATSSPKRPSMERSNSSKS----KAETPRTPSSPSSPTFAPSVCLL 178
Query: 108 NDCFR--EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPY 165
C+ + VR+K + LS +AD++ +D CD ++A +E ++++ D Y
Sbjct: 179 APCYLTGDSVRDKCVEMLSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKY 235
Query: 166 KIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ + ++ + NLKDP+NP RRNV G + I MTA+EMA D++
Sbjct: 236 RNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 281
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 144 (55.7 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
+ VR K C + + + D + + A D R++ +E +F D YK + ++
Sbjct: 109 DAVRNK-CREMLTAALQTDHD-HVAIGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSR 165
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ NLKD KNPD RRNV G + P+ I MT++EMA D++
Sbjct: 166 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 204
Score = 39 (18.8 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KASSRKKIQDFASDLIVSWRNM 23
K SS +++ A LI SW+ +
Sbjct: 31 KQSSDEEVIALAKSLIKSWKKL 52
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 154 (59.3 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 52/170 (30%), Positives = 86/170 (50%)
Query: 43 EPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESV-VTEKTNSSDNLS 101
EPA + +++ E + + +++++S SS+ + ESV VT T +
Sbjct: 83 EPAADKNSEEKKKERTTPVVSPSETSPEPREESSSSNSSS--KSESVDVTPNTLIA-TFP 139
Query: 102 RSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRY 161
R+ +D R RE + +AL +G+ I + CD + I E +F ++
Sbjct: 140 RAP-GTSDSVRIKCREMLSNALQ--TGDDYITIGSD---CDELGAQI--EECIFLEFKNT 191
Query: 162 DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
D YK + ++ + NLKD KNP+ RRNV G V P+ I MTA+EMA D++
Sbjct: 192 DMKYKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDEL 241
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 146 (56.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 42/135 (31%), Positives = 69/135 (51%)
Query: 77 TSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRD 136
+S SSNV S ++TN+ D S R + VR K + L+ D+ +
Sbjct: 107 SSSSSNV----SSRKDETNARDTYVSSFPRAPST-SDSVRLKCREMLAAALRTGDDYVA- 160
Query: 137 EVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPE 196
+ A D + +E A++++ D YK + ++ + NLKD KNP+ R+NV G + P+
Sbjct: 161 -IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPD 218
Query: 197 TIVGMTAKEMAGDKM 211
MTA+EMA D++
Sbjct: 219 LFARMTAEEMASDEL 233
Score = 38 (18.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 64 VGIVKVQKVDQNATSLSSNVVR 85
V ++ Q D+ TSL+ ++++
Sbjct: 50 VNALRKQSTDEEVTSLAKSLIK 71
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 144 (55.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
+ VR K C + + + D + + A D R++ +E +F D YK + ++
Sbjct: 136 DAVRNK-CREMLTAALQTDHD-HVAIGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSR 192
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ NLKD KNPD RRNV G + P+ I MT++EMA D++
Sbjct: 193 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 231
Score = 39 (18.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KASSRKKIQDFASDLIVSWRNM 23
K SS +++ A LI SW+ +
Sbjct: 58 KQSSDEEVIALAKSLIKSWKKL 79
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 152 (58.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 40/134 (29%), Positives = 71/134 (52%)
Query: 80 SSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFR--EVVREKVCDALSKVSGEADEEIRDE 137
+S + E+ T + S+ + S+ C+ + VR+K + LS +A+++ +D
Sbjct: 150 NSGKSKAETPKTPTSPSTPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAAL-KAEDDYKDY 208
Query: 138 VNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
CD ++A +E + E+ D Y+ + ++ + NLKDP+NP RRNV G +
Sbjct: 209 GVNCD--KMASEIEDHILEELKSTDMKYRNRVRSRISNLKDPRNPSLRRNVLSGAISAGL 266
Query: 198 IVGMTAKEMAGDKM 211
I MTA+EMA D++
Sbjct: 267 IAKMTAEEMASDEL 280
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 150 (57.9 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 60/219 (27%), Positives = 104/219 (47%)
Query: 7 KKIQDFASDLIVSWRNM--SLEQMRDERKGSYT--IPGDIEPAKIEKVDKRTSEECQEI- 61
KK D A DL+ +NM SLE ++ R G + +++ + K + +++
Sbjct: 20 KKNTDGAIDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLIKAWKKLL 79
Query: 62 -SGVGIVKVQKVD---QNATSL----SSNVV-RPESVVTEKTNSSDNLSRSMIRCNDCFR 112
G + +K + Q+++S SS+ +PE+ T T + + M
Sbjct: 80 DGSEGKPEEKKGESPLQSSSSKDCPGSSDTSNKPETPKTPTTPVTPKFT--MFPPAPVTT 137
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
+ VR K C L + + D + + A D +A +E +++++ D YK + ++
Sbjct: 138 DSVRTK-CRELLVAALQTDGD-HQTIGA-DCEHMAAQIEDYIYQEFKSTDMKYKTRLRSR 194
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ NLKD KNPD RRNV G + PE I MTA+EMA ++
Sbjct: 195 ISNLKDQKNPDLRRNVLCGNISPERIASMTAEEMASPEL 233
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 142 (55.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 92 EKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALE 151
++TN+ D S R + VR K + L+ D+ + + A D + +E
Sbjct: 118 DETNARDTYVSSFPRAPST-SDSVRLKCREMLAAALRTGDDYVA--IGA-DEEELGSQIE 173
Query: 152 SAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
A++++ D YK + ++ + NLKD KNP+ R+NV G + P+ MTA+EMA D++
Sbjct: 174 EAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDEL 233
Score = 40 (19.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 64 VGIVKVQKVDQNATSLSSNVVR 85
V ++ Q D+ TSL+ ++++
Sbjct: 50 VNAIRKQSTDEEVTSLAKSLIK 71
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 145 (56.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLG 174
+R+K + L+ D++ +D C+++ I E ++++ D YK + ++ +
Sbjct: 248 IRDKCIEMLTAAL-RTDDDYKDYGTNCEAMGAEI--EDYIYQETKATDMKYKNRVRSRIS 304
Query: 175 NLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NLKDPKNP+ R+NV G ++ I MTA+EMA D++
Sbjct: 305 NLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDEL 341
Score = 40 (19.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 2 KASSRKKIQDFASDLIVSWRNM--SLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSEE 57
K + + + + A LI +W+ + S + + ER + P+K RTS E
Sbjct: 57 KHCTDEDVVNLAKILIKNWKRLLESAQNPKSERPNE--VKNGSHPSKPSGSPSRTSPE 112
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 149 (57.5 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 58/203 (28%), Positives = 90/203 (44%)
Query: 15 DLIVSWR-NMSLEQMRDERKGSYTIPGDIEPAKIEK--VDKRTSEECQEISGVGI---VK 68
DL+ S R MS+ +R + I K K +D SEE E +
Sbjct: 67 DLLQSTRIGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDLDASEEKSEEKKKNLSLPTS 126
Query: 69 VQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSG 128
K N+ SSN R E T T + + C D R RE + AL
Sbjct: 127 SSKETGNSRDQSSNK-RQEPPKTPTTPKITTFPPAPVTC-DAVRNKCREMLTTAL----- 179
Query: 129 EADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNV 188
+AD++ + A D +A +E +++ D YK + ++ + NLKD KNP+ ++NV
Sbjct: 180 QADDDYI-AIGA-DCEHIAAQIEECIYQDIKNTDMKYKNRVRSRISNLKDSKNPELKKNV 237
Query: 189 HLGQVKPETIVGMTAKEMAGDKM 211
G + PE I MT++EMA +++
Sbjct: 238 LCGAITPEQIAVMTSEEMASNEL 260
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 147 (56.8 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 45/149 (30%), Positives = 73/149 (48%)
Query: 70 QKVDQNATSLSSNVVRPESVVT-------EKTNSSDNLSRSMIRCNDCFREVVREKVCDA 122
+K D TS +S R ES + ++TN+ D S R + VR K +
Sbjct: 68 KKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPST-SDSVRLKCREM 126
Query: 123 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNP 182
L+ D+ I + A D + +E A++++ D YK + ++ + NLKD KNP
Sbjct: 127 LAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNP 183
Query: 183 DFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ R+NV G + P+ MTA+EMA D++
Sbjct: 184 NLRKNVLCGNIPPDLFARMTAEEMASDEL 212
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 147 (56.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 45/149 (30%), Positives = 73/149 (48%)
Query: 70 QKVDQNATSLSSNVVRPESVVT-------EKTNSSDNLSRSMIRCNDCFREVVREKVCDA 122
+K D TS +S R ES + ++TN+ D S R + VR K +
Sbjct: 89 KKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPST-SDSVRLKCREM 147
Query: 123 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNP 182
L+ D+ I + A D + +E A++++ D YK + ++ + NLKD KNP
Sbjct: 148 LAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNP 204
Query: 183 DFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ R+NV G + P+ MTA+EMA D++
Sbjct: 205 NLRKNVLCGNIPPDLFARMTAEEMASDEL 233
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 137 (53.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
+ VR K C + + + D + V A D ++ +E +F D YK + ++
Sbjct: 113 DAVRNK-CREMLTAALQTDHD-HMAVGA-DCEGLSAQIEECIFRDVGNTDMKYKNRVRSR 169
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ NLKD KNPD RRNV G + P+ I MT++EMA D++
Sbjct: 170 ISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDEL 208
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 2 KASSRKKIQDFASDLIVSWRNM---SLEQMRDERK 33
K SS +++ A LI SW+ + S + R++R+
Sbjct: 34 KQSSDEEVIALAKSLIKSWKKLLDASDAKAREQRR 68
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 146 (56.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 46/149 (30%), Positives = 73/149 (48%)
Query: 70 QKVDQNATSLSSNVVRPES-----VVTEK--TNSSDNLSRSMIRCNDCFREVVREKVCDA 122
+K D TS +S R ES V + K TN+ D S R + VR K +
Sbjct: 89 KKKDTAITSQNSPEAREESSSSGNVSSRKDETNARDTYVSSFPRAPST-SDSVRLKCREM 147
Query: 123 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNP 182
L+ D+ + + A D + +E A++++ D YK + ++ + NLKD KNP
Sbjct: 148 LAAALRTGDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNP 204
Query: 183 DFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ R+NV G + P+ MTA+EMA D++
Sbjct: 205 NLRKNVLCGNIPPDLFARMTAEEMASDEL 233
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 130 (50.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 146 VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKE 205
+A LE A++ + YK + ++ L NL+DPKNP+ R+ LGQ+ PE + MT +E
Sbjct: 32 MAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKMTPEE 91
Query: 206 MAGDKMLSCYQR 217
MA D M Q+
Sbjct: 92 MASDDMKQMRQK 103
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 145 (56.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 59/221 (26%), Positives = 101/221 (45%)
Query: 6 RKKIQDFASDLIVSWRN--MSLEQMRDERKGSYT--IPGDIEPAKIEKVDKRTSEECQEI 61
+KK A DL+ +N M+LE ++ R G I ++ + K + +++
Sbjct: 17 QKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL 76
Query: 62 -SGVGIVK---VQKVDQNATSLSSNVVRPESVVT-------EKTNSSDNLSRSMIRCNDC 110
G K +K + TS +S R ES + ++TN+ D S R
Sbjct: 77 LDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST 136
Query: 111 FREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYK 170
+ VR K + L+ D+ I + A D + +E A++++ D YK + +
Sbjct: 137 -SDSVRLKCREMLAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVR 192
Query: 171 AVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ + NLKD KNP+ R+NV G + P+ MTA+EMA D++
Sbjct: 193 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDEL 233
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 150 (57.9 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 53/200 (26%), Positives = 100/200 (50%)
Query: 21 RNMSLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSEECQE-ISGVGIVKVQKVDQNATSL 79
+N+S + D +KG + +P + ++ + +R+SEE E IS + V+K ++
Sbjct: 831 KNLSESRDSDTKKGQH-VPAR-KVSQTAVIPRRSSEEKGEKISKESLSVVEKSTKSGVHE 888
Query: 80 SSNVVRP--ESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDE 137
+ + E T T+ N+ S D R V++ + + L K ++ +I +E
Sbjct: 889 KQEIKKKKNEKGPTSATHLP-NVPASKPSA-DQIRHSVKQSLKEILMKRLTDSSLKIPEE 946
Query: 138 VNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
A +VA +E +F + D YK KY++++ NLKDPKN + V G+V P+
Sbjct: 947 RAA----KVATRIERELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDH 1002
Query: 198 IVGMTAKEMAGDKMLSCYQR 217
++ M+ +E+A ++ + QR
Sbjct: 1003 LIKMSPEELASKELAAWRQR 1022
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 55/195 (28%), Positives = 95/195 (48%)
Query: 27 QMRDERK-GSYTIPGDIEPAKIEKVDKR-TSEEC--QEISGVGIVKVQKVDQNATSLSSN 82
Q+ RK G +P K EK+ K T+ C ++ S G + Q++ + T
Sbjct: 843 QLAPFRKMGQPVLPRRSSEEKSEKMTKESTTVICTGEKASKPGAHEKQEIKKKKTEKGLP 902
Query: 83 VVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACD 142
V P +V K S+D + R+ VR + D L K +++ ++ +E A
Sbjct: 903 GVHPPAVPASKP-SADQI-----------RQSVRHSLKDILMKRLTDSNLKVPEEKAA-- 948
Query: 143 SVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMT 202
+VA +E +F + D YK KY++++ NLKDPKN + V G+V P+ ++ M+
Sbjct: 949 --KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMS 1006
Query: 203 AKEMAGDKMLSCYQR 217
+E+A K L+ ++R
Sbjct: 1007 PEELAS-KELAAWRR 1020
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/103 (33%), Positives = 60/103 (58%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVL 173
VR V A+ +V +E+ D V + ++V +A +E+A+F YK KY+++L
Sbjct: 104 VRNTVVHAMQEVLRSRLQELPDLVLSEEAVEGIAAGIETALFNLTQTTSCRYKTKYRSLL 163
Query: 174 GNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQ 216
NL+DP+NPD V G V PE +V M++ ++A + L+C++
Sbjct: 164 FNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQLAPQE-LACWR 205
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 130 (50.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 34/100 (34%), Positives = 53/100 (53%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESA---MFEKWDRYDGPYKIKYKA 171
VR K + LS D+ I + A D + +E A +F++ D YK + ++
Sbjct: 145 VRVKCREMLSAALRTGDDYIA--IGA-DEEELGSQIEEAKAPIFQELKNTDMKYKNRVRS 201
Query: 172 VLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ NLKD KNP+ R+NV G + P+ MTA+EMA D++
Sbjct: 202 RIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDEL 241
Score = 41 (19.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 2 KASSRKKIQDFASDLIVSWRNM----SLEQMRDERK 33
K S+ +++ A LI SW+ + S ++ +E+K
Sbjct: 59 KQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKK 94
Score = 40 (19.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 64 VGIVKVQKVDQNATSLSSNVVR 85
V ++ Q D+ TSL+ ++++
Sbjct: 54 VNAIRKQSTDEEVTSLAKSLIK 75
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 131 (51.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 43/136 (31%), Positives = 65/136 (47%)
Query: 77 TSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEE-IR 135
T LS +P+ T T + I C D R RE + AL + D + +
Sbjct: 107 TDLSCK--KPDPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVA 158
Query: 136 DEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKP 195
VN C+ ++ +E +F D YK + ++ + NLKD KNP RRNV G + P
Sbjct: 159 VGVN-CE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITP 215
Query: 196 ETIVGMTAKEMAGDKM 211
+ I MT++EMA D++
Sbjct: 216 QQIAVMTSEEMASDEL 231
Score = 39 (18.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 2 KASSRKKIQDFASDLIVSWRNM-SLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSE-ECQ 59
K SS +++ A LI SW+ + + + +G T P P K RT++ C+
Sbjct: 57 KQSSDEELIALAKSLIKSWKKLLDVSDGKSRNQGRGT-P---LPTSSSKDASRTTDLSCK 112
Query: 60 E 60
+
Sbjct: 113 K 113
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 128 (50.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 77 TSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRD 136
T LS +P+ T T + I C D R RE + AL + D +
Sbjct: 107 TDLSCK--KPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVA 158
Query: 137 EVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPE 196
+C+ ++ +E +F D YK + ++ + NLKD KNP RRNV G + P+
Sbjct: 159 VGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQ 216
Query: 197 TIVGMTAKEMAGDKM 211
I MT++EMA D++
Sbjct: 217 QIAVMTSEEMASDEL 231
Score = 43 (20.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 KASSRKKIQDFASDLIVSWRNM---SLEQMRDERKGS 35
K SS +++ A LI SW+ + S + RD+ +G+
Sbjct: 57 KQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGT 93
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 128 (50.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 77 TSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRD 136
T LS +P+ T T + I C D R RE + AL + D +
Sbjct: 107 TDLSCK--KPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVA 158
Query: 137 EVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPE 196
+C+ ++ +E +F D YK + ++ + NLKD KNP RRNV G + P+
Sbjct: 159 VGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQ 216
Query: 197 TIVGMTAKEMAGDKM 211
I MT++EMA D++
Sbjct: 217 QIAVMTSEEMASDEL 231
Score = 43 (20.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 KASSRKKIQDFASDLIVSWRNM---SLEQMRDERKGS 35
K SS +++ A LI SW+ + S + RD+ +G+
Sbjct: 57 KQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGT 93
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 124 (48.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
+ VR K C + + + D + + A D +A +E +F D YK + ++
Sbjct: 137 DAVRTK-CREMLTAALQTDHD-HVAIGA-DCECLAGQIEECIFRDVGNTDMKYKNRVRSR 193
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
L NLKD KNP RR V G + P+ I MT++EMA D++
Sbjct: 194 LSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDEL 232
Score = 48 (22.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 2 KASSRKKIQDFASDLIVSWRNM---SLEQMRDERKGSYTIP 39
K SS +++ A LI SW+ + S + R+ R+G ++P
Sbjct: 58 KQSSDEEVVTLAKSLIKSWKKLLDASDAKARERRRGG-SLP 97
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 136 (52.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 43/148 (29%), Positives = 71/148 (47%)
Query: 70 QKVDQNATSLSSNVVRPESVV------TEKTNSSDNLSRSMIRCNDCFREVVREKVCDAL 123
+K D TS +S R ES ++ N+ D S R + VR K + L
Sbjct: 89 KKKDTAITSQNSPEAREESSSGHGSSRKDEPNARDTYVSSFPRAPST-SDSVRLKCREML 147
Query: 124 SKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD 183
+ ++ I + A D + +E A++++ D YK + ++ + NLKD KNP+
Sbjct: 148 AAALRTGEDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPN 204
Query: 184 FRRNVHLGQVKPETIVGMTAKEMAGDKM 211
R+NV G + P+ MTA+EMA D++
Sbjct: 205 LRKNVLCGNIPPDLFARMTAEEMASDEL 232
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 127 (49.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLG 174
VR K + LS D+ I + A D + + + +F++ D YK + ++ +
Sbjct: 120 VRVKCREMLSAALRTGDDYIA--IGA-DEEELE-TIHTPIFQELKNTDMKYKNRVRSRIA 175
Query: 175 NLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NLKD KNP+ R+NV G + P+ MTA+EMA D++
Sbjct: 176 NLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDEL 212
Score = 41 (19.5 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 2 KASSRKKIQDFASDLIVSWRNM----SLEQMRDERK 33
K S+ +++ A LI SW+ + S ++ +E+K
Sbjct: 34 KQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKK 69
Score = 40 (19.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 64 VGIVKVQKVDQNATSLSSNVVR 85
V ++ Q D+ TSL+ ++++
Sbjct: 29 VNAIRKQSTDEEVTSLAKSLIK 50
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 152 SAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
S ++++ D Y+ + ++ + NLKDP+NP RRNV G + I MTA+EMA D++
Sbjct: 9 SHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 68
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNAC-DSVRVAIALESAMFEKWDRYDGPYKI 167
D R RE + AL K+ GE E C + +A LE A++ +++ D YK
Sbjct: 151 DAVRIKCREMLATAL-KI-GEVPE-------GCGEPEEMAAELEDAIYSEFNNTDMKYKN 201
Query: 168 KYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ ++ + NLKDPKNP R N G V + + MT +EMA D+M
Sbjct: 202 RIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEM 245
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 136 (52.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L K +++ ++ +E A +VA +E +F + D YK K
Sbjct: 194 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 249
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 250 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 297
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 140 (54.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 36/109 (33%), Positives = 63/109 (57%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L K +++ +I +E +A +VA +E +F + D YK K
Sbjct: 908 DQIRQSVRHSLKDILMKRLTDSNLKIPEEKSA----KVATKIEKELFSFFRDTDAKYKNK 963
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 964 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 1011
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 21 RNMSLEQMRDERKGSYT-----IPGDIEPAKIEKVDKRTSEE 57
RN+ Q R R S IP +I K E D+ TS E
Sbjct: 647 RNLQPRQRRSSRSFSLDEPPLFIPDNIATVKKEGSDQTTSVE 688
Score = 36 (17.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 31 ERKGSYTIPGDIEPAKIEKVDK--RTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPES 88
E + S + G+++ IE V+ R +E +EI + D+ +T S+ V +S
Sbjct: 291 EDEQSDLVSGELDDT-IEGVNAVGRLEQESEEIK----FSCEG-DRMSTEPESSDVSSDS 344
Query: 89 VVTEKTNSSDN 99
T+K + N
Sbjct: 345 ACTDKNKTEKN 355
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 126 (49.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 132 EEIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVH 189
+E+ D V + +V +A +E+A+F+ +G Y+ KY+++L NL+DP+NPD F + +H
Sbjct: 9 QELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIH 68
Query: 190 LGQVKPETIVGMTAKEMAGDKM 211
G V P+ +V M + ++A ++
Sbjct: 69 -GDVTPQGLVRMNSVQLAPQEL 89
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L K +++ ++ +E A +VA +E +F + D YK K
Sbjct: 739 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 794
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 795 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 842
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 119 (46.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 142 DSVRVAIALE--SAMFEKWDRYD--GP---YKIKYKAVLGNLKDPKNPDFRRNVHLGQVK 194
D V V ++ E S+ E++ D G YK + ++ + NLKD KNP RRNV G +
Sbjct: 129 DHVAVGVSCEHLSSQIEEYILLDLSGSQIGYKNRVRSRISNLKDAKNPGLRRNVLCGAIT 188
Query: 195 PETIVGMTAKEMAGDKM 211
P+ I MT++EMA D++
Sbjct: 189 PQQIAVMTSEEMASDEL 205
Score = 43 (20.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 KASSRKKIQDFASDLIVSWRNM---SLEQMRDERKGS 35
K SS +++ A LI SW+ + S + RD+ +G+
Sbjct: 31 KQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGT 67
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/99 (33%), Positives = 60/99 (60%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVL 173
VR V A+ +V +E+ D V + +V +A +E+A+F+ +G Y+ KY+++L
Sbjct: 543 VRSTVVRAMREVLWSRLQELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLL 602
Query: 174 GNLKDPKNPD-FRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NL+DP+NPD F + +H G V P+ +V M + ++A ++
Sbjct: 603 FNLRDPRNPDLFLKVIH-GDVTPQGLVRMNSVQLAPQEL 640
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 138 (53.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 44/146 (30%), Positives = 76/146 (52%)
Query: 76 ATSLSSNVVRP--ESVVTEKTNSSDNLSRSMIRC--NDCFREVVREKVCDALSKVSGEAD 131
++SL + + RP SV T +S +S I+ N R+ +R + + L K ++D
Sbjct: 652 SSSLGAGLKRPAPSSVPTASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSD 711
Query: 132 EEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVHL 190
+ + E + +VA+ +E MF + D YK KY++++ NLKDPKN F R +H
Sbjct: 712 DLVMTE---SEVGKVALNIEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLH- 767
Query: 191 GQVKPETIVGMTAKEMAGDKMLSCYQ 216
G++ +V M +E+ K LS ++
Sbjct: 768 GEISLSKLVRMKPEELLS-KELSVWK 792
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 138 (53.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 44/146 (30%), Positives = 76/146 (52%)
Query: 76 ATSLSSNVVRP--ESVVTEKTNSSDNLSRSMIRC--NDCFREVVREKVCDALSKVSGEAD 131
++SL + + RP SV T +S +S I+ N R+ +R + + L K ++D
Sbjct: 652 SSSLGAGLKRPAPSSVPTASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSD 711
Query: 132 EEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVHL 190
+ + E + +VA+ +E MF + D YK KY++++ NLKDPKN F R +H
Sbjct: 712 DLVMTE---SEVGKVALNIEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLH- 767
Query: 191 GQVKPETIVGMTAKEMAGDKMLSCYQ 216
G++ +V M +E+ K LS ++
Sbjct: 768 GEISLSKLVRMKPEELLS-KELSVWK 792
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L K +++ ++ +E A +VA +E +F + D YK K
Sbjct: 925 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 980
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 981 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 1028
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L + E++ ++ +E A +VA +E +F + D YK K
Sbjct: 927 DQIRQSVRHSLKDILMRRLTESNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 982
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 983 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 1030
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 119 (46.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 103 SMIRCNDCFREVVREKVCDALSKVSGEA-DEEIRDEV-NACDSVRVAIALESAMFEKWDR 160
+M + D R+ V E + +L+KV+ E D E++ V CD VA+++ESAM
Sbjct: 108 TMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM------ 161
Query: 161 YDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
++L N+ D NPD RR V +G++ E +V M EM +K+ QR
Sbjct: 162 ----------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQR 208
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 114 (45.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 162 DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
D YK + ++ L NLKD KNP RR V G + P+ I MT++EMA D++
Sbjct: 186 DMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDEL 235
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 2 KASSRKKIQDFASDLIVSWRNM 23
K SS +++ A LI SW+ +
Sbjct: 58 KQSSDEEVVTLAKSLIKSWKKL 79
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 112 REVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKA 171
R VR+ + + L K S E+D +I + A VA E +F + D YK KY++
Sbjct: 756 RRSVRDSLEEILLKRSKESDLKISSDRPA----EVARRTEKELFALFQGVDSKYKNKYRS 811
Query: 172 VLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
+ NLKD KN + V G+V P +V MTA+E+A K L+ +++
Sbjct: 812 LTFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEELAS-KELAAWRK 856
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 115 (45.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 36/132 (27%), Positives = 65/132 (49%)
Query: 80 SSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVN 139
SSN+ S ++T++ D + S+ R + VR K + L+ D+ + +
Sbjct: 98 SSNI----STSKDETSTRDTYASSVPRAPST-SDSVRLKCRETLAAALRTGDDYVA--IG 150
Query: 140 ACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIV 199
A D + +E A++++ D YK + + N+KD KNP+ NV G++ P+
Sbjct: 151 A-DEEELGSQIEEAIYKEIRNTDKKYKSPERTRISNIKDAKNPN---NVLCGKISPDLFA 206
Query: 200 GMTAKEMAGDKM 211
M A+EMA D++
Sbjct: 207 RMRAEEMASDEL 218
Score = 36 (17.7 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 2 KASSRKKIQDFASDLIVSWR 21
K S+ +++ A LI SW+
Sbjct: 58 KQSTDEEVISLAKSLIKSWK 77
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 116 (45.9 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 133 EIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVHL 190
E+ D V + + V +A +E+A+++ +G YK KY+++L NL+DP+N D F + VH
Sbjct: 42 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVH- 100
Query: 191 GQVKPETIVGMTAKEMAGDKM 211
G V P +V M++ ++A ++
Sbjct: 101 GDVTPYDLVRMSSMQLAPQEL 121
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 146 VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVHLGQVKPETIVGMTAK 204
+A +E+A+F +G YK KY+++L NL+DP+NP+ F + VH G + P +V M++
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVH-GDITPHGLVRMSSV 632
Query: 205 EMAGDKM 211
++A ++
Sbjct: 633 QLAPQEL 639
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 32/99 (32%), Positives = 58/99 (58%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVL 173
VR V ++ +V E+ D V + + V +A +E+A+++ +G YK KY+++L
Sbjct: 608 VRGTVVRSMQEVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLL 667
Query: 174 GNLKDPKNPD-FRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NL+DP+N D F + VH G V P +V M++ ++A ++
Sbjct: 668 FNLRDPRNLDLFLKVVH-GDVTPYDLVRMSSMQLAPQEL 705
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 50/187 (26%), Positives = 87/187 (46%)
Query: 35 SYTIPGDIEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKT 94
S T+ DI PA + E ++ +G G Q+ ++ T + N V V +KT
Sbjct: 260 SVTVGEDITPAMSTR-----DESFEQKNGNGRTLSQESSKD-TKM--NYVNQSDV--QKT 309
Query: 95 NSSDNLSRSMIRCNDCF---REVVREKVCD-ALSKVSGEADEEIRDEVNACDSVRVAIAL 150
+ +R +D E+++ L VS + E + D +A +
Sbjct: 310 QFDEVFPCDDVRFSDSIFTGDELLQGNGLSWVLEPVSDFGENETQKSFE--DPELLASKI 367
Query: 151 ESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDK 210
E +F+ + + YK K +++L NLKD NP+ R +V G++ PE + MTA+E+A K
Sbjct: 368 ELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELAS-K 426
Query: 211 MLSCYQR 217
LS +++
Sbjct: 427 ELSQWRQ 433
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 133 EIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPD-FRRNVHL 190
E+ D V + + V +A +E+A+++ +G YK KY+++L NL+DP+N D F + VH
Sbjct: 63 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVH- 121
Query: 191 GQVKPETIVGMTAKEMAGDKM 211
G V P +V M++ ++A ++
Sbjct: 122 GDVTPYDLVRMSSMQLAPQEL 142
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 125 (49.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 108 NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKI 167
N+ R +R + D L K ++D+ E N R+A+ +E MF D YK
Sbjct: 758 NNQMRSNIRRSLTDILYKRVSDSDDLTMSE-NEVG--RLAVGIEKEMFNLCMNTDNKYKN 814
Query: 168 KYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
KY++++ NLKDPKN V G++ P +V ++ +E+ K LS +++
Sbjct: 815 KYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLS-KELSDWRK 863
Score = 38 (18.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 40 GDIEPAKIEKVDKRTSEEC 58
GD+ K+E DK C
Sbjct: 42 GDVSEDKVEDPDKSLKPAC 60
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 43/159 (27%), Positives = 78/159 (49%)
Query: 62 SGVGIVKVQKVDQNATSLS--SNVVRPESV---VTEKTNSSDNL-SRS-MIRCNDCF--R 112
S V + VQ V S++ S+ PE+V V + + SDN+ S+ +++ ND
Sbjct: 226 SPVAGISVQTVLPEILSIAKTSDAQVPEAVKPFVQDNVSYSDNVFSKDDLLQGNDLSWAL 285
Query: 113 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAV 172
E E + +++ G + E D +A +E+ +F+ + + YK K +++
Sbjct: 286 ESDIEFTVNCQNEMIGAMANDGSLEKLLLDPQVLAFEIETELFKLFGGVNKKYKEKGRSL 345
Query: 173 LGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
L NLKD NP R V G++ E + M+A+E+A ++
Sbjct: 346 LFNLKDKSNPKLREKVMYGEIAAERLCSMSAEELASKEL 384
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 108 (43.1 bits), Expect = 0.00090, P = 0.00090
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 69 VQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSG 128
V V Q A+S S+ ++ + V+ K +S N + R+ V + + D L+K S
Sbjct: 107 VNGVQQPASS-QSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESE 165
Query: 129 EADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNV 188
+ I A +S E D + YK +Y+ + N+ NPD + +
Sbjct: 166 HPPQSILHTAKAIES-------EMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKI 218
Query: 189 HLGQVKPETIVGMTAKEMA 207
G + PE + AK++A
Sbjct: 219 ANGDITPEFLATCDAKDLA 237
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 217 217 0.00090 112 3 11 23 0.42 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 592 (63 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.09u 0.13s 21.22t Elapsed: 00:00:01
Total cpu time: 21.10u 0.13s 21.23t Elapsed: 00:00:01
Start: Fri May 10 22:04:40 2013 End: Fri May 10 22:04:41 2013