BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038232
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLG 174
VR+K + LS + +A++ +D CD ++A +E ++++ D Y+ + ++ +
Sbjct: 186 VRDKCVEMLS-AALKAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRIS 242
Query: 175 NLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NLKDP+NP RRNV G + PE I MTA+EMA D++
Sbjct: 243 NLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDEL 279
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 80 SSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFR--EVVREKVCDALSKVSGEADEEIRDE 137
+S+ + ES T + + + SM C+ + VR+K + LS + +AD++ +D
Sbjct: 150 NSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLS-AALKADDDYKDY 208
Query: 138 VNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
CD ++A +E ++++ D Y+ + ++ + NLKDP+NP RRNV G +
Sbjct: 209 GVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGL 266
Query: 198 IVGMTAKEMAGDKM 211
I MTA+EMA D++
Sbjct: 267 IAKMTAEEMASDEL 280
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLG 174
VR+K + LS + +AD++ +D CD ++A +E ++++ D Y+ + ++ +
Sbjct: 188 VRDKCVEMLS-AALKADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRIS 244
Query: 175 NLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NLKDP+NP RRNV G + I MTA+EMA D++
Sbjct: 245 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 281
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 142 DSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGM 201
D R++ +E +F D YK + ++ + NLKD KNPD RRNV G + P+ I M
Sbjct: 162 DCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVM 221
Query: 202 TAKEMAGDKM 211
T++EMA D++
Sbjct: 222 TSEEMASDEL 231
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 53/221 (23%)
Query: 2 KASSRKKIQDFASDLIVSWRNM----SLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSEE 57
K S+ +++ A LI SW+ + S E+ DE+K EPA + + S E
Sbjct: 55 KQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKK--------EPA----ITSQNSPE 102
Query: 58 CQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRC---NDCFREV 114
+E S + S NV S ++TN+ D S R +D R
Sbjct: 103 AREES---------------TSSGNV----SNRKDETNARDTYVSSFPRAPSTSDSVRLK 143
Query: 115 VREKVCDALSK----VSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYK 170
RE + AL ++ ADEE + +E A++++ D YK + +
Sbjct: 144 CREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVR 192
Query: 171 AVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
+ + NLKD KNP+ R+NV G + P+ MTA+EMA D++
Sbjct: 193 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDEL 233
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIK 168
D R+ VR + D L K +++ ++ +E A +VA +E +F + D YK K
Sbjct: 925 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 980
Query: 169 YKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217
Y++++ NLKDPKN + V G+V P+ ++ M+ +E+A K L+ ++R
Sbjct: 981 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS-KELAAWRR 1028
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 92 EKTNSSDNLSRSMIRC---NDCFREVVREKVCDALSK----VSGEADEEIRDEVNACDSV 144
++TN+ D S R +D R RE + AL V+ ADEE
Sbjct: 118 DETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEE----------- 166
Query: 145 RVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAK 204
+ +E A++++ D YK + ++ + NLKD KNP+ R+NV G + P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 205 EMAGDKM 211
EMA D++
Sbjct: 227 EMASDEL 233
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 92 EKTNSSDNLSRSMIRC---NDCFREVVREKVCDALSK----VSGEADEEIRDEVNACDSV 144
++TN+ D S R +D R RE + AL V+ ADEE
Sbjct: 118 DETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYVAIGADEE----------- 166
Query: 145 RVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAK 204
+ +E A++++ D YK + ++ + NLKD KNP+ R+NV G + P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 205 EMAGDKM 211
EMA D++
Sbjct: 227 EMASDEL 233
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 146 VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKE 205
+A LE A++ +++ D YK + ++ + NLKDPKNP R N G V + + MT +E
Sbjct: 180 MAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEE 239
Query: 206 MAGDKM 211
MA D+M
Sbjct: 240 MASDEM 245
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 140 ACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIV 199
D + +E A++++ D YK + ++ + NLKD KNP+ R+NV G + P+
Sbjct: 162 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 221
Query: 200 GMTAKEMAGDKM 211
MTA+EMA D++
Sbjct: 222 RMTAEEMASDEL 233
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 LESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGD 209
+E +F D YK + ++ + NLKD KNP RRNV G + P+ I MT++EMA D
Sbjct: 170 IEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASD 229
Query: 210 KM 211
++
Sbjct: 230 EL 231
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 150 LESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGD 209
+E +F D YK + ++ + NLKD KNP RRNV G + P+ I MT++EMA D
Sbjct: 170 IEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASD 229
Query: 210 KM 211
++
Sbjct: 230 EL 231
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 146 VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKE 205
+A +E +F D YK + ++ L NLKD KNP RR V G + P+ I MT++E
Sbjct: 167 LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEE 226
Query: 206 MAGDKM 211
MA D++
Sbjct: 227 MASDEL 232
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 115 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWDRYDGPYKIKYKAVL 173
VR V ++ +V E+ D V + + V +A +E+A+++ +G YK KY+++L
Sbjct: 608 VRGTVVRSMQEVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLL 667
Query: 174 GNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKM 211
NL+DP+N D V G V P +V M++ ++A ++
Sbjct: 668 FNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQEL 705
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 32/211 (15%)
Query: 2 KASSRKKIQDFASDLIVSWRNMSLEQMRDERKGSYT---IPGDIEPAKIEKVDKRTSEEC 58
K S+ +I +I SW++ + R + + PG+ E DK T E
Sbjct: 54 KKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAE-------DKTTVGES 106
Query: 59 QEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMIRCNDCFREVVREK 118
V V Q A+S S + + + V T+ NS ++ + I + +R++
Sbjct: 107 ----------VNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAI-----YHHKLRDQ 151
Query: 119 VCDALSKVSGEADEEIRDEVNACDSVRVAIALESAM--FEKWDRYDGPYKIKYKAVLGNL 176
V AL V + E + + A A+ES M D + YK +Y+ + N+
Sbjct: 152 VLKALYDVLAKESEHPPQSI-----LHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNV 206
Query: 177 KDPKNPDFRRNVHLGQVKPETIVGMTAKEMA 207
NPD + + G + PE + AK++A
Sbjct: 207 ISKNNPDLKHKIANGDITPEFLATCDAKDLA 237
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 146 VAIALESAMFEKWDRYD----GPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGM 201
+A+ +E +++ + + Y+ K++ + NL+D KN R V GQV P+T+V M
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAM 296
Query: 202 TAKEM 206
+++EM
Sbjct: 297 SSEEM 301
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 100 LSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWD 159
+S + + N R+ +R + + L K ++D+ I E ++A+ +E MF +
Sbjct: 656 VSPAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFNLFQ 712
Query: 160 RYDGPYKIKYKAVLGNLKDPKNPD-----FRRNVHLGQV---KPETIV 199
D YK KY++++ NLKDPKN R + L ++ KPE +V
Sbjct: 713 VTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELV 760
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 100 LSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWD 159
+S + + N R+ +R + + L K ++D+ I E ++A+ +E MF +
Sbjct: 659 MSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFNLFQ 715
Query: 160 RYDGPYKIKYKAVLGNLKDPKN 181
D YK KY++++ NLKDPKN
Sbjct: 716 VTDNRYKSKYRSIMFNLKDPKN 737
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 150 LESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGD 209
+E +F + + YK ++ + NLK+PKN ++N+ G + P MT EMA
Sbjct: 204 IEEHVFTLYSKNIKKYKTCIRSKVANLKNPKNSHLQQNLLSGTMSPREFAEMTVMEMANK 263
Query: 210 KM 211
++
Sbjct: 264 EL 265
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 142 DSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGM 201
D +A+ +E ++ + Y ++ + NL+D KN R NV G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 202 TAKEMA 207
T++EMA
Sbjct: 231 TSEEMA 236
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 141 CDSVRVAIALESAMF----EKWDRYDGP---YKIKYKAVLGNLKDPKNPDFRRNVHLGQV 193
+S +A+ LE MF D P Y+ K++A+ NL D KNP FR V ++
Sbjct: 247 LNSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEI 306
Query: 194 KPETIVGMTAKEMAGDKM 211
+V ++++EMA +
Sbjct: 307 SFNDLVNLSSEEMANPDL 324
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 146 VAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKE 205
A +E +F + + YK ++ + NLK+P+N ++N+ G P MT E
Sbjct: 201 FAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVME 260
Query: 206 MAGDKM 211
MA ++
Sbjct: 261 MANKEL 266
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 165 YKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGD 209
Y+ + +++ NLKD NP R +V ++ P+ + MT+ E+A +
Sbjct: 179 YRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASE 223
>sp|Q64SX6|TRPD_BACFR Anthranilate phosphoribosyltransferase OS=Bacteroides fragilis
(strain YCH46) GN=trpD PE=3 SV=1
Length = 331
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 17 IVSWRNMSLEQMRDERKG--SYTIPGDI-EPAKIEKVDKR---------TSEECQEISGV 64
+ RN+S+E++ R +P D+ E A I+ V ++ C ++G
Sbjct: 42 VFLMRNISVEELCGFRDALLEMRVPVDLSEFAPIDIVGTGGDGKNTFNISTAACFTVAGA 101
Query: 65 GIVKVQKVDQNATSLS--SNVVRPESVVTEKTNSSDNLSRSMIRCNDCF 111
G V+ + ATS+S SNV+ V + T+ +D L RSM +CN +
Sbjct: 102 GFPVVKHGNYGATSVSGASNVMEQHGV--KFTDHTDRLRRSMEKCNIAY 148
>sp|Q6FJ00|BYE1_CANGA Transcription factor BYE1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BYE1 PE=3
SV=1
Length = 607
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 126 VSGEADEEIRDEVNACDSVRVAIALESAMFEK------WDRYDGPYKIKYKAVLGNLKDP 179
V G ++ I DE A +ES +F + Y K + + NLKDP
Sbjct: 268 VKGHDEQSISDEF--------AEEMESKLFSHCRSISNYKTLISVYTEKVRVLFSNLKDP 319
Query: 180 KNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLS 213
KN + V Q+ E +V M+A ++A + S
Sbjct: 320 KNLSLKEAVINRQLDLEQLVSMSATDLANPDLQS 353
>sp|Q5LBZ5|TRPD_BACFN Anthranilate phosphoribosyltransferase OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=trpD PE=3 SV=1
Length = 331
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 17 IVSWRNMSLEQMRDERKG--SYTIPGDI-EPAKIEKVDKR---------TSEECQEISGV 64
+ RN+S+E++ R +P D+ E A I+ V ++ C ++G
Sbjct: 42 VFLMRNISVEELCGFRDALLEMRVPVDLSEFAPIDIVGTGGDGKNTFNISTAACFTVAGA 101
Query: 65 GIVKVQKVDQNATSLS--SNVVRPESVVTEKTNSSDNLSRSMIRCNDCF 111
G V+ + ATS+S SNV+ V + T+ +D L RSM +CN +
Sbjct: 102 GFPVVKHGNYGATSVSGASNVMEQHGV--KFTDHTDRLRRSMEKCNIAY 148
>sp|P35546|RET_MOUSE Proto-oncogene tyrosine-protein kinase receptor Ret OS=Mus musculus
GN=Ret PE=1 SV=2
Length = 1115
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 35 SYTIPGDIEPAKIEKVDKRTSEECQEISGVGI-VKVQKVDQNATSLSSNVVRPESVVTEK 93
+Y+ P + + ++ K E CQE SGV I K+Q N T+L VVT
Sbjct: 409 AYSFPVNKRARRYAQIGKVCVENCQEFSGVSIQYKLQPSSINCTAL--------GVVTSP 460
Query: 94 TNSSDNLSRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRV 146
++S L ND E +R C L D + R + A V V
Sbjct: 461 EDTSGTLF-----VNDT--EALRRPECTKLQYTVVATDRQTRRQTQASLVVTV 506
>sp|Q12072|IOC2_YEAST ISWI one complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IOC2 PE=1 SV=1
Length = 812
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 38 IPGDIEPAKIEKVDKR------TSEECQEISGVGIVKVQKVDQNATSLSSNVVRPE---S 88
IPG + P + V + T EE E++ GI Q+ N S+ PE
Sbjct: 495 IPGTVGPLQTGDVPELPSDFCITKEELDELANYGIFTPQQEPDNQDSVFQCPGEPELAPM 554
Query: 89 VVTEKTNSSDNLSRSMIRCNDCFR 112
++TE T + +R +I C+ C+R
Sbjct: 555 IITEDTETDLFNNRPLICCDHCYR 578
>sp|Q8AAD5|TRPD_BACTN Anthranilate phosphoribosyltransferase OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=trpD PE=3 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 17 IVSWRNMSLEQMRDERKG--SYTIPGDI-EPAKIEKVDKR---------TSEECQEISGV 64
+ RN+S+E++ R +P D+ E A I+ V ++ C ++G
Sbjct: 42 VFLMRNISVEELCGFRDALLEMRVPVDLSEFAPIDIVGTGGDGKNTFNISTAACFTVAGA 101
Query: 65 GIVKVQKVDQNATSLS--SNVVRPESVVTEKTNSSDNLSRSMIRCNDCF 111
GI V+ + ATS+S SNV+ V + T+ D + RSM +CN +
Sbjct: 102 GIPVVKHGNYGATSVSGASNVMEQHGV--KFTSDVDQMRRSMEQCNIAY 148
>sp|A5IKF8|MNMG_THEP1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=mnmG PE=3 SV=1
Length = 626
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 46 KIEKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTEKTNSSDNLSRSMI 105
K+ +++R +EE + + V + +++ TSL ++ ++ ESV LS S +
Sbjct: 469 KVLSLERRINEEIERLKKVAVKPSDRINDLLTSLGTSPLK-ESVSLYHLLKRPQLSYSTL 527
Query: 106 RCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPY 165
K D E E++ V ++ E A+FEK++ Y+ PY
Sbjct: 528 ------------KFLDPNPMDDPEVVEQVEINVKYEGYIQKMFE-EVAVFEKYENYEVPY 574
Query: 166 KIKYKAV 172
+ Y AV
Sbjct: 575 DLDYDAV 581
>sp|Q73MZ2|SYV_TREDE Valine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=valS PE=3 SV=1
Length = 909
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 138 VNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
VN C S AI+ + E DR G Y I YK G + + + + + + +PET
Sbjct: 182 VNWCPSCGTAISDDEVEHE--DRKGGMYHIYYKLADGAVLQNEAGEKIQEIEIATTRPET 239
Query: 198 IVGMTA 203
++G TA
Sbjct: 240 LLGDTA 245
>sp|Q54FK2|RABN2_DICDI Ras-related protein RabN2 OS=Dictyostelium discoideum GN=rabN2 PE=3
SV=1
Length = 184
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 41 DIEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNATSLSSNVVRPESVVTE 92
DI I ++R + C+ I G GI+ + + LS N++ P + +T+
Sbjct: 120 DIPRTDISISNERIEQWCKNIEGQGIIDKVHYFETSAKLSQNIIMPFNTITK 171
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 30.4 bits (67), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 143 SVRVAIALESAMFE-----KWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
S A LE +++ ++ D Y K +++ NLKD KN + + +V G++
Sbjct: 275 SQEFAHNLEEELYKACLNIEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNK 334
Query: 198 IVGMTAKEMAG 208
+V M A E+A
Sbjct: 335 LVNMNASELAN 345
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 143 SVRVAIALESAMFE-----KWDRYDGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPET 197
S A LE +++ ++ D Y K +++ NLKD KN + + +V G++
Sbjct: 275 SQEFAHNLEEELYKACLNVEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNK 334
Query: 198 IVGMTAKEMA 207
+V M A E+A
Sbjct: 335 LVNMNASELA 344
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,170,402
Number of Sequences: 539616
Number of extensions: 2861608
Number of successful extensions: 6925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 6883
Number of HSP's gapped (non-prelim): 69
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)