Query 038232
Match_columns 217
No_of_seqs 146 out of 507
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 7.3E-32 2.5E-36 242.4 16.5 189 2-216 54-246 (309)
2 2lw4_A Transcription elongatio 100.0 1.5E-33 5.2E-38 220.9 3.7 107 103-216 4-110 (113)
3 3ndq_A Transcription elongatio 100.0 5.1E-32 1.7E-36 210.7 7.1 103 101-210 6-108 (108)
4 2dme_A PHD finger protein 3; P 100.0 5.6E-32 1.9E-36 214.0 5.6 107 107-217 8-114 (120)
5 3po3_S Transcription elongatio 100.0 1E-28 3.5E-33 206.9 7.9 107 101-216 7-115 (178)
6 1wjt_A Transcription elongatio 97.0 0.00014 4.8E-09 55.6 0.7 28 2-29 63-91 (103)
7 1kdx_A CBP; complex (transcrip 58.1 24 0.00081 25.4 5.6 66 108-177 11-76 (81)
8 2gut_A ARC/mediator, positive 53.7 16 0.00055 26.2 4.1 55 109-177 12-66 (77)
9 3e9v_A Protein BTG2; B-cell tr 47.3 25 0.00085 27.0 4.6 61 144-206 29-93 (120)
10 1nwd_B GAD, glutamate decarbox 38.2 21 0.00071 20.4 2.1 14 14-27 12-25 (28)
11 2i7u_A Four-alpha-helix bundle 33.4 43 0.0015 22.3 3.4 19 8-26 3-21 (62)
12 2z15_A Protein TOB1; human TOB 29.0 25 0.00084 27.4 1.9 61 144-206 33-97 (130)
13 2lq2_A De novo designed antifr 23.9 26 0.0009 20.3 0.9 12 10-21 18-29 (30)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.98 E-value=7.3e-32 Score=242.45 Aligned_cols=189 Identities=19% Similarity=0.257 Sum_probs=126.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCCCCcchhhccccccccccccccccccccccccccccccCCC
Q 038232 2 KASSRKKIQDFASDLIVSWRNMSLEQMRDERKGSYTIPGDIEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNATSLSS 81 (217)
Q Consensus 2 ~~~~~~~i~~~A~~l~~~WKkvv~~e~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 81 (217)
.+|++.+|+++|++||..||++|.+++.++.+......++ +..+.+.+++... ++. . ..+. +...++.
T Consensus 54 rkh~~~~v~~~Ak~Li~~WK~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~-~-~~~~-~~~~~~~--- 121 (309)
T 1pqv_S 54 KKSTNVEISKLVKKMISSWKDAINKNKRSRQAQQHHQDHA-PGNAEDKTTVGES-----VNG-V-QQPA-SSQSDAM--- 121 (309)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhccCCcccccccccc-cccccCCCCCCCC-----cCC-C-CCCc-ccccccc---
Confidence 5899999999999999999999999977554322111010 0000011111000 000 0 0000 0000000
Q ss_pred CCCCCCccccccCCCCCCC--CccccCCChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhc
Q 038232 82 NVVRPESVVTEKTNSSDNL--SRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWD 159 (217)
Q Consensus 82 ~~~~~~~v~~e~~ss~~~~--~~s~~~~~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~ 159 (217)
+ +...+.+++.+.. ...+..++|++|++|+++|+++|.....+.+. ++..+|.+||.+||+.|+
T Consensus 122 --~---~~~~~~~~~~~~~~~~~~~~~~~d~~R~k~r~~L~~aL~~~~~~~~~---------~~~~~A~~IE~al~~~~~ 187 (309)
T 1pqv_S 122 --K---QDKYVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKVNN 187 (309)
T ss_pred --c---CCCCCCCCCCCCCCCCCCcCcCChHHHHHHHHHHHHHHhcCCCccch---------hHHHHHHHHHHHHHHHhC
Confidence 0 0000001111111 22255789999999999999999874332221 456999999999999998
Q ss_pred CCChh--hHHHHHHHHhhcCCCCChhhHhhhhcCCCCccccccCCcccCCCHHHHhhhh
Q 038232 160 RYDGP--YKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQ 216 (217)
Q Consensus 160 ~~~~~--Yk~k~RSl~fNLKD~kNp~Lr~~VL~G~isp~~Lv~Ms~eEMASdelk~e~q 216 (217)
+++.. |++++|+|+|||||++||.||++||.|+|+|++||.|+++||||+++|++++
T Consensus 188 ~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~ 246 (309)
T 1pqv_S 188 CDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIE 246 (309)
T ss_pred CCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHH
Confidence 87777 9999999999999999999999999999999999999999999999998875
No 2
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.97 E-value=1.5e-33 Score=220.90 Aligned_cols=107 Identities=32% Similarity=0.481 Sum_probs=95.6
Q ss_pred cccCCChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcCCChhhHHHHHHHHhhcCCCCCh
Q 038232 103 SMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNP 182 (217)
Q Consensus 103 s~~~~~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~RSl~fNLKD~kNp 182 (217)
+.+.++|++|++|+++|+++|.... +.. ....++..+|.+||.+||..|+.++..|++++|||+|||||++||
T Consensus 4 p~p~t~D~vRdk~~e~L~~aL~~~~----~~~---~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np 76 (113)
T 2lw4_A 4 PVPVTCDAVRNKCREMLTAALQTDH----DHV---AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNP 76 (113)
T ss_dssp CSCCCCSTTHHHHHHHHHHHHHSST----HHH---HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCC----Ccc---cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCH
Confidence 4677999999999999999998521 111 123567799999999999999998999999999999999999999
Q ss_pred hhHhhhhcCCCCccccccCCcccCCCHHHHhhhh
Q 038232 183 DFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQ 216 (217)
Q Consensus 183 ~Lr~~VL~G~isp~~Lv~Ms~eEMASdelk~e~q 216 (217)
+||++||+|+|+|++||.||++||||+|+|+.++
T Consensus 77 ~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~ 110 (113)
T 2lw4_A 77 DLRRNVLCGAITPQQIAVMTSEEMASDELKEIRK 110 (113)
T ss_dssp HHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSS
T ss_pred HHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999876
No 3
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.97 E-value=5.1e-32 Score=210.68 Aligned_cols=103 Identities=30% Similarity=0.452 Sum_probs=87.4
Q ss_pred CccccCCChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcCCChhhHHHHHHHHhhcCCCC
Q 038232 101 SRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPK 180 (217)
Q Consensus 101 ~~s~~~~~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~RSl~fNLKD~k 180 (217)
+.+.+.++|++|++|+++|+++|.... +..+. .+++..+|.+||.+||+.|+.++..|++++|||+|||||++
T Consensus 6 ~~~~~~t~d~vR~k~~~lL~~aL~~~~-----d~~~~--~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~k 78 (108)
T 3ndq_A 6 TPRAPSTSDSVRLKCREMLAAALRTGD-----DYIAI--GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAK 78 (108)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHTTGGG-----HHHHH--TCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHcCC-----CCCcc--cccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCC
Confidence 456678999999999999999999732 22211 25677999999999999999888999999999999999999
Q ss_pred ChhhHhhhhcCCCCccccccCCcccCCCHH
Q 038232 181 NPDFRRNVHLGQVKPETIVGMTAKEMAGDK 210 (217)
Q Consensus 181 Np~Lr~~VL~G~isp~~Lv~Ms~eEMASde 210 (217)
||+||++||+|+|+|++||+||++||||+|
T Consensus 79 Np~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 79 NPNLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp CHHHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred CHHHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 999999999999999999999999999987
No 4
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=5.6e-32 Score=213.97 Aligned_cols=107 Identities=29% Similarity=0.478 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcCCChhhHHHHHHHHhhcCCCCChhhHh
Q 038232 107 CNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLKDPKNPDFRR 186 (217)
Q Consensus 107 ~~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~RSl~fNLKD~kNp~Lr~ 186 (217)
++|++|++|+++|+++|.....+.+... ..+++..+|.+||.+||+.|+.++..|++++|||+|||||++||+||+
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~ 83 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKV----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 83 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCC----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHH
T ss_pred CCchHHHHHHHHHHHHHHHhcccccccc----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5689999999999999998766543211 123567999999999999999888999999999999999999999999
Q ss_pred hhhcCCCCccccccCCcccCCCHHHHhhhhC
Q 038232 187 NVHLGQVKPETIVGMTAKEMAGDKMLSCYQR 217 (217)
Q Consensus 187 ~VL~G~isp~~Lv~Ms~eEMASdelk~e~q~ 217 (217)
+||+|+|+|++||.||++||||+|+|+++++
T Consensus 84 ~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~ 114 (120)
T 2dme_A 84 KVLKGEVTPDHLIRMSPEELASKELAAWRRR 114 (120)
T ss_dssp HHHHTSSCTTHHHHSCTTTTTTCCSTTTCTT
T ss_pred HHHcCCCCHHHHhcCCHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999874
No 5
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.95 E-value=1e-28 Score=206.85 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=90.3
Q ss_pred CccccCCChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcC-CCh-hhHHHHHHHHhhcCC
Q 038232 101 SRSMIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDR-YDG-PYKIKYKAVLGNLKD 178 (217)
Q Consensus 101 ~~s~~~~~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~-~~~-~Yk~k~RSl~fNLKD 178 (217)
...++.++|++|++|+++|++||.....+.+. ++..+|.+||.+||+.|++ ++. .|++++|||+|||||
T Consensus 7 ~v~~~~~~d~vRdk~~~lL~~aL~~~~~~~~~---------~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd 77 (178)
T 3po3_S 7 GVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVIS 77 (178)
T ss_dssp --------CHHHHHHHHHHHHHTTSSSSCSTT---------HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHS
T ss_pred CcCcCcCCChHHHHHHHHHHHHHhcCCCCchh---------hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCC
Confidence 35667899999999999999999986655443 3458999999999999986 455 899999999999999
Q ss_pred CCChhhHhhhhcCCCCccccccCCcccCCCHHHHhhhh
Q 038232 179 PKNPDFRRNVHLGQVKPETIVGMTAKEMAGDKMLSCYQ 216 (217)
Q Consensus 179 ~kNp~Lr~~VL~G~isp~~Lv~Ms~eEMASdelk~e~q 216 (217)
++||+||++||+|+|+|++||.|+++||||+|+|++++
T Consensus 78 ~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e 115 (178)
T 3po3_S 78 KNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIE 115 (178)
T ss_dssp SSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHH
T ss_pred CCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 6
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=97.00 E-value=0.00014 Score=55.56 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.5
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHHhh
Q 038232 2 KAS-SRKKIQDFASDLIVSWRNMSLEQMR 29 (217)
Q Consensus 2 ~~~-~~~~i~~~A~~l~~~WKkvv~~e~~ 29 (217)
++| |+++|+.+|++||..||++|.++..
T Consensus 63 rKh~~~~~V~~lAk~Lv~~WK~~v~~~~~ 91 (103)
T 1wjt_A 63 RKHCSDKEVVSLAKVLIKNWKRLLDSPRT 91 (103)
T ss_dssp HHHCCCSHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356 9999999999999999999988643
No 7
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=58.05 E-value=24 Score=25.44 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcCCChhhHHHHHHHHhhcC
Q 038232 108 NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLK 177 (217)
Q Consensus 108 ~d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~RSl~fNLK 177 (217)
...+|+..+..|..++.... .|.... +.-..+....|..+|..||+... +-.+|-..+.-.++++.
T Consensus 11 t~~lR~hlv~Klv~aI~P~p--dp~a~~-d~rm~~l~~yArkvE~~~ye~A~-srdeYY~llA~kiykiq 76 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTP--DPAALK-DRRMENLVAYAKKVEGDMYESAN-SRDEYYHLLAEKIYKIQ 76 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCS--SGGGGG-SHHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCC--Chhhhh-hHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 37899999999999988621 112111 11112356789999999999764 24688888777777765
No 8
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=53.66 E-value=16 Score=26.18 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCchhHhhhhhccchHHHHHHHHHHHHHhhcCCChhhHHHHHHHHhhcC
Q 038232 109 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWDRYDGPYKIKYKAVLGNLK 177 (217)
Q Consensus 109 d~~Rdk~r~~L~~aL~~~~~e~~~~~~~e~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~RSl~fNLK 177 (217)
..+|++++..+-+++......+. .=|.++|.++|.... +..+|-..+=-|+..++
T Consensus 12 ~~FRq~vi~~i~~a~~~~G~~~~-------------k~a~emEnhvF~Ka~-tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRKAGVAHS-------------KSSKDMESHVFLKAK-TRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-------------SCHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCCCC-------------CCHHHHHHHHHhccC-cccchHHHHHHHHHHHH
Confidence 57899999999999997332222 337799999999764 34688877766666554
No 9
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=47.31 E-value=25 Score=27.04 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhcCC----ChhhHHHHHHHHhhcCCCCChhhHhhhhcCCCCccccccCCcccC
Q 038232 144 VRVAIALESAMFEKWDRY----DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEM 206 (217)
Q Consensus 144 ~~lA~~IE~alf~~~~~~----~~~Yk~k~RSl~fNLKD~kNp~Lr~~VL~G~isp~~Lv~Ms~eEM 206 (217)
..++..++..|++.|.+. ....-+-||.|..|=+ --|.|.+.-..-.|+.++|...=|.||
T Consensus 29 ~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIrin~~--~Dp~l~~Aa~~sgl~~~~l~~~LP~el 93 (120)
T 3e9v_A 29 KVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRINHK--MDPIISRVASQIGLSQPQLHQLLPSEL 93 (120)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEECSSS--CCHHHHHHHHHTTCCHHHHHHHSCTTE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEECCC--CCHHHHHHHHHhCCCHHHHHHhCCccc
Confidence 489999999999999754 2455688899998843 668888877777787777754334443
No 10
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=38.25 E-value=21 Score=20.41 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 038232 14 SDLIVSWRNMSLEQ 27 (217)
Q Consensus 14 ~~l~~~WKkvv~~e 27 (217)
-.+|-+|||.|.+-
T Consensus 12 lemitawkkfveek 25 (28)
T 1nwd_B 12 LEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46789999999764
No 11
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=33.39 E-value=43 Score=22.28 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038232 8 KIQDFASDLIVSWRNMSLE 26 (217)
Q Consensus 8 ~i~~~A~~l~~~WKkvv~~ 26 (217)
+++.-|..|++.|||+..+
T Consensus 3 klreeaaklfeewkklaee 21 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEE 21 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3556688999999997644
No 12
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=29.03 E-value=25 Score=27.40 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhcCC----ChhhHHHHHHHHhhcCCCCChhhHhhhhcCCCCccccccCCcccC
Q 038232 144 VRVAIALESAMFEKWDRY----DGPYKIKYKAVLGNLKDPKNPDFRRNVHLGQVKPETIVGMTAKEM 206 (217)
Q Consensus 144 ~~lA~~IE~alf~~~~~~----~~~Yk~k~RSl~fNLKD~kNp~Lr~~VL~G~isp~~Lv~Ms~eEM 206 (217)
..++..++..|++.|... ....-+.||.|.+|=+ .-|.|.+.-..-.|..++|...=|.||
T Consensus 33 ~~F~~~L~~~L~~~y~~HWyP~~P~kGs~yRcI~i~~~--~Dp~i~~Aa~~sGl~~~dl~~~LP~el 97 (130)
T 2z15_A 33 NIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEK--VDPVIEQASKESGLDIDDVRGNLPQDL 97 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCTTTTHHHHCEEESSS--BCHHHHHHHHTTTCCHHHHHHHSCTTE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccceeEEEECCC--CCHHHHHHHHHhCCCHHHHHHhCCccC
Confidence 489999999999999763 2456788999999744 678888887777787777754444443
No 13
>2lq2_A De novo designed antifreeze peptide 4M; AFP, antifreeze protein; NMR {Synthetic}
Probab=23.86 E-value=26 Score=20.27 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q 038232 10 QDFASDLIVSWR 21 (217)
Q Consensus 10 ~~~A~~l~~~WK 21 (217)
-..|.|++..||
T Consensus 18 gkaatdvvaawk 29 (30)
T 2lq2_A 18 GKAATDVVAAWK 29 (30)
T ss_dssp HHHHHHHHHHTT
T ss_pred hhhHHHHHHHhc
Confidence 467899999997
Done!