Query 038233
Match_columns 332
No_of_seqs 178 out of 222
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 1.5E-35 3.3E-40 235.4 8.0 79 179-257 1-80 (80)
2 smart00338 BRLZ basic region l 98.8 2.5E-08 5.3E-13 75.5 6.7 45 89-136 2-46 (65)
3 PF00170 bZIP_1: bZIP transcri 98.7 5.4E-08 1.2E-12 73.6 6.1 44 90-136 3-46 (64)
4 PF07716 bZIP_2: Basic region 98.6 1.7E-07 3.8E-12 69.0 6.2 45 89-137 2-46 (54)
5 KOG3584 cAMP response element 97.4 0.00022 4.7E-09 69.7 5.6 37 90-129 289-325 (348)
6 PF03131 bZIP_Maf: bZIP Maf tr 96.5 0.00063 1.4E-08 55.2 -0.1 31 92-122 30-60 (92)
7 KOG4343 bZIP transcription fac 96.0 0.013 2.9E-07 61.4 6.3 47 88-137 274-323 (655)
8 KOG0709 CREB/ATF family transc 94.2 0.052 1.1E-06 56.1 4.2 43 92-134 251-293 (472)
9 KOG0837 Transcriptional activa 93.7 0.095 2E-06 50.9 4.8 29 92-120 206-234 (279)
10 PF13801 Metal_resist: Heavy-m 89.1 5.2 0.00011 31.5 9.5 45 259-303 40-84 (125)
11 KOG4005 Transcription factor X 86.7 7.5 0.00016 37.9 10.5 45 89-136 66-110 (292)
12 KOG3119 Basic region leucine z 82.0 3.2 7E-05 39.9 5.9 45 89-136 191-235 (269)
13 PRK12750 cpxP periplasmic repr 75.5 11 0.00024 34.1 7.0 49 255-304 48-104 (170)
14 KOG4571 Activating transcripti 72.2 17 0.00037 36.1 7.9 52 86-137 220-283 (294)
15 KOG3725 SH3 domain protein SH3 61.4 1E+02 0.0022 30.9 10.7 25 196-220 236-260 (375)
16 KOG2202 U2 snRNP splicing fact 52.8 17 0.00038 35.5 3.9 61 164-233 76-136 (260)
17 PF07889 DUF1664: Protein of u 45.2 39 0.00085 29.6 4.6 21 238-258 21-41 (126)
18 PF06013 WXG100: Proteins of 1 41.5 1.4E+02 0.003 21.8 9.0 23 163-185 46-68 (86)
19 PF11471 Sugarporin_N: Maltopo 40.0 26 0.00056 27.0 2.4 17 117-136 36-52 (60)
20 TIGR02302 aProt_lowcomp conser 39.9 3.1E+02 0.0067 31.2 11.4 42 181-222 509-550 (851)
21 PRK11702 hypothetical protein; 38.9 15 0.00032 31.7 1.0 14 105-118 5-18 (108)
22 cd00890 Prefoldin Prefoldin is 38.8 1.1E+02 0.0024 25.0 6.2 26 234-259 67-97 (129)
23 PTZ00266 NIMA-related protein 38.2 92 0.002 35.9 7.2 7 132-138 520-526 (1021)
24 PF13628 DUF4142: Domain of un 36.9 2.6E+02 0.0056 23.6 10.0 97 108-209 30-130 (139)
25 cd00223 TOPRIM_TopoIIB_SPO TOP 35.8 42 0.00092 29.3 3.4 39 238-277 89-127 (160)
26 PF09789 DUF2353: Uncharacteri 34.6 48 0.001 33.3 3.9 26 110-135 127-152 (319)
27 COG3678 CpxP P pilus assembly/ 29.7 1.2E+02 0.0026 27.5 5.3 59 240-303 39-97 (160)
28 COG3130 Rmf Ribosome modulatio 29.4 13 0.00029 28.3 -0.7 14 235-248 34-47 (55)
29 PF00589 Phage_integrase: Phag 28.8 24 0.00053 28.8 0.7 21 238-258 28-48 (173)
30 PRK14563 ribosome modulation f 28.7 22 0.00047 27.4 0.3 14 233-247 33-46 (55)
31 PF06698 DUF1192: Protein of u 28.5 64 0.0014 25.0 2.9 20 115-137 23-42 (59)
32 KOG1656 Protein involved in gl 27.0 1.2E+02 0.0026 29.2 4.9 33 101-133 60-92 (221)
33 PF09036 Bcr-Abl_Oligo: Bcr-Ab 26.8 56 0.0012 26.7 2.4 37 108-144 24-61 (79)
34 PTZ00446 vacuolar sorting prot 26.6 1.4E+02 0.0029 28.0 5.2 39 96-134 60-99 (191)
35 PF13586 DDE_Tnp_1_2: Transpos 26.4 28 0.00061 27.3 0.6 18 230-247 45-62 (88)
36 cd01042 DMQH Demethoxyubiquino 25.8 2.1E+02 0.0045 26.1 6.1 83 119-206 40-125 (165)
37 PF13334 DUF4094: Domain of un 25.6 69 0.0015 26.6 2.8 22 114-138 74-95 (95)
38 PF03232 COQ7: Ubiquinone bios 25.5 85 0.0018 28.7 3.6 48 157-206 82-131 (172)
39 PRK04940 hypothetical protein; 25.1 69 0.0015 29.5 3.0 16 169-188 72-87 (180)
40 PF07047 OPA3: Optic atrophy 3 25.1 2E+02 0.0043 24.9 5.7 39 99-137 95-133 (134)
41 KOG4196 bZIP transcription fac 24.6 2.3E+02 0.005 25.4 6.0 30 91-120 52-81 (135)
42 PF10552 ORF6C: ORF6C domain; 23.7 2.1E+02 0.0046 23.9 5.4 21 233-253 93-113 (116)
43 PF07445 priB_priC: Primosomal 23.7 4.1E+02 0.0089 24.1 7.6 82 116-216 2-87 (173)
44 COG1510 Predicted transcriptio 23.3 3E+02 0.0065 25.8 6.7 64 164-227 92-170 (177)
45 PF14644 DUF4456: Domain of un 23.1 79 0.0017 29.2 3.0 41 162-202 93-133 (208)
46 KOG0249 LAR-interacting protei 22.6 7.6E+02 0.016 28.2 10.5 46 93-138 140-185 (916)
47 PTZ00464 SNF-7-like protein; P 22.1 2E+02 0.0043 27.2 5.4 25 107-131 66-90 (211)
48 cd01182 INT_REC_C DNA breaking 21.4 56 0.0012 25.6 1.5 22 238-259 22-43 (162)
49 PF02185 HR1: Hr1 repeat; Int 21.3 1.1E+02 0.0025 23.2 3.1 25 114-138 38-62 (70)
50 KOG4100 Uncharacterized conser 21.2 5.3E+02 0.011 22.9 7.4 93 164-278 10-110 (125)
51 PF11471 Sugarporin_N: Maltopo 21.2 1.1E+02 0.0023 23.6 2.9 14 124-137 33-46 (60)
52 TIGR01062 parC_Gneg DNA topois 20.9 4.9E+02 0.011 29.1 8.9 39 260-298 404-444 (735)
53 KOG1414 Transcriptional activa 20.8 33 0.00071 34.8 -0.0 35 88-122 281-315 (395)
54 PF06210 DUF1003: Protein of u 20.6 2.8E+02 0.006 23.6 5.5 38 96-134 54-91 (108)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=1.5e-35 Score=235.45 Aligned_cols=79 Identities=58% Similarity=1.012 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcCCCcchHhhhhHHhcCCCchHHHHHHhhc
Q 038233 179 RLMCELRAAVQEHL-PENELRLYVDNCLAHYDEIMNLKGMVAKTDVFHLVSGLWKSPAERCFLWLGGFRPSELIKVILSQ 257 (332)
Q Consensus 179 r~l~ELR~AL~~~~-~D~eLr~LVd~~msHY~eyf~~Ks~aAk~DVf~l~Sg~W~Tp~ER~FLWIGGfRPS~llkLL~~q 257 (332)
|+|.|||+|++++. +|++|+.|||+||+||++||++|+.+|++|||++|+|+|+||+|||||||||||||++|||||++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 57999999999998 89999999999999999999999999999999999999999999999999999999999999975
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.75 E-value=2.5e-08 Score=75.51 Aligned_cols=45 Identities=53% Similarity=0.666 Sum_probs=38.5
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
.|+|-.||+.+||+||++||.|||.||+.||. ++.+|+.+-+..+
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~~L~ 46 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLK 46 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 47899999999999999999999999999999 6666666655544
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.66 E-value=5.4e-08 Score=73.56 Aligned_cols=44 Identities=48% Similarity=0.698 Sum_probs=37.4
Q ss_pred ChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 90 DPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 90 d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
..|-.+|+.+||+|||+||.|||+||++||. ++..|+.+....+
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~ 46 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK 46 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 8888887766554
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.56 E-value=1.7e-07 Score=69.02 Aligned_cols=45 Identities=44% Similarity=0.587 Sum_probs=39.1
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~ 137 (332)
.|.+..||. .||+||++||-|||.|++.||. ++..|+.|....++
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLRQ 46 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 467889999 9999999999999999999999 77777777766554
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.42 E-value=0.00022 Score=69.69 Aligned_cols=37 Identities=49% Similarity=0.643 Sum_probs=32.4
Q ss_pred ChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH
Q 038233 90 DPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLE 129 (332)
Q Consensus 90 d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qle 129 (332)
.-|-.=||-.||||||.+|-.||-||.-||+ |++=||
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence 3366679999999999999999999999999 777666
No 6
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.50 E-value=0.00063 Score=55.17 Aligned_cols=31 Identities=35% Similarity=0.402 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSR 122 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr 122 (332)
|-.||...||.||++||.||+.++..||...
T Consensus 30 K~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~ 60 (92)
T PF03131_consen 30 KQRRRRLKNRGYAQNCRKRKLDQIEELEEEI 60 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999843
No 7
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=95.98 E-value=0.013 Score=61.39 Aligned_cols=47 Identities=38% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCChHHHH---HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 88 TPDPKTLR---RLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 88 ~~d~k~~r---rLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~ 137 (332)
..|+|+++ |...|||-|--||.|||-|++-||. +|..|++|-+..|.
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~Lk~ 323 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQLKK 323 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 46787764 7889999999999999999999999 99999988776553
No 8
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=94.17 E-value=0.052 Score=56.10 Aligned_cols=43 Identities=42% Similarity=0.574 Sum_probs=32.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
|-.||...|-+-|--||-|||-||..||+--..-+.=.|||++
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~k 293 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQK 293 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHH
Confidence 6679999999999999999999999999933333333344443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=93.71 E-value=0.095 Score=50.93 Aligned_cols=29 Identities=45% Similarity=0.504 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLES 120 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~ 120 (332)
|..|.-++|||||+|||.||---|-+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 44566688999999999999877777776
No 10
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=89.10 E-value=5.2 Score=31.47 Aligned_cols=45 Identities=24% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCCcHHHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 038233 259 EPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 303 (332)
Q Consensus 259 epLTeqQL~~I~~LqqstqqaEdALSqgme~LQqslAd~~~~~~~ 303 (332)
-.||++|...|..+......+-+.+-+.+....+.|.+.+.++++
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPP 84 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 379999999999999999999999999999999999999987654
No 11
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=86.70 E-value=7.5 Score=37.93 Aligned_cols=45 Identities=33% Similarity=0.395 Sum_probs=36.4
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
...|++||=-.||=||..+|=||||-...+|- .+..|+.|-++.+
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een~~L~ 110 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEENEILQ 110 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 56799999999999999999999999888887 5555555555443
No 12
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=82.03 E-value=3.2 Score=39.94 Aligned_cols=45 Identities=33% Similarity=0.459 Sum_probs=29.1
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
.|++-..|...|=+|+||||...|.=-++. .+|...||.|.+.-|
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~---~~r~~~leken~~lr 235 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEM---AHRVAELEKENEALR 235 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 477888899999999999998766433222 224444444444433
No 13
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=75.54 E-value=11 Score=34.13 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=37.2
Q ss_pred hhcCCCCcHHHHHhHhhHhHHHHHHHHH--------HHHHHHHHHHHHhhhhhcCCCC
Q 038233 255 LSQIEPLTEQQILGICGLQQSTQEAEDA--------LSQGLEALNQSILDTIASDSLS 304 (332)
Q Consensus 255 ~~qLepLTeqQL~~I~~LqqstqqaEdA--------LSqgme~LQqslAd~~~~~~~~ 304 (332)
...| +||++|...|..++...+.+=.+ .-..|..+.+.+.+.+.++++.
T Consensus 48 ~~~L-~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FD 104 (170)
T PRK12750 48 MRQL-DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFD 104 (170)
T ss_pred HhhC-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCC
Confidence 3566 69999999999998777664333 4666778888888888887763
No 14
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=72.22 E-value=17 Score=36.08 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHhhHHH-HHHhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHhh
Q 038233 86 PKTPDPKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RIKLTQLEQELQRART 137 (332)
Q Consensus 86 ~~~~d~k~~rrLaqNREa-ARkSRlRKKaYvqqLE~s-----------r~kL~qleqelqrar~ 137 (332)
+.+.+.|++||-+|+|.+ |-.=|-||||=-+.||.. |.++..||-|++.-||
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888877765 888899999998888652 4556778888887774
No 15
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=61.43 E-value=1e+02 Score=30.91 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhc
Q 038233 196 ELRLYVDNCLAHYDEIMNLKGMVAK 220 (332)
Q Consensus 196 eLr~LVd~~msHY~eyf~~Ks~aAk 220 (332)
=|+..|+.-|.-|.+-|+.-..+-+
T Consensus 236 CL~dFVeaQmtyYAQcyq~MlDLQk 260 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLMLDLQK 260 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778899999999988887654443
No 16
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=52.85 E-value=17 Score=35.48 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcCCCcc
Q 038233 164 AVFDMEYARWLEVHHRLMCELRAAVQEHLPENELRLYVDNCLAHYDEIMNLKGMVAKTDVFHLVSGLWKS 233 (332)
Q Consensus 164 a~F~~fY~rWleeq~r~l~ELR~AL~~~~~D~eLr~LVd~~msHY~eyf~~Ks~aAk~DVf~l~Sg~W~T 233 (332)
..|+.||+.|+.|+.....|+..-. ..|+-=-.||..|.-+|. ++.-+.+|.. .|.+.|..
T Consensus 76 ~~~defyEd~f~E~~~kygEiee~~---Vc~Nl~~hl~GNVYV~f~--~Ee~ae~a~~----~lnnRw~~ 136 (260)
T KOG2202|consen 76 RHEDEFYEDVFTELEDKYGEIEELN---VCDNLGDHLVGNVYVKFR--SEEDAEAALE----DLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh---hhcccchhhhhhhhhhcc--cHHHHHHHHH----HHcCcccc
Confidence 6799999999999999888887762 223323357888888877 3333333333 46666653
No 17
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.17 E-value=39 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=15.7
Q ss_pred hhHHhcCCCchHHHHHHhhcC
Q 038233 238 CFLWLGGFRPSELIKVILSQI 258 (332)
Q Consensus 238 ~FLWIGGfRPS~llkLL~~qL 258 (332)
|++|.=||.=|++.=+-...|
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m 41 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSM 41 (126)
T ss_pred eeeeecCCchhHHHHHHHHhH
Confidence 689999999888775544443
No 18
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=41.50 E-value=1.4e+02 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038233 163 AAVFDMEYARWLEVHHRLMCELR 185 (332)
Q Consensus 163 aa~F~~fY~rWleeq~r~l~ELR 185 (332)
+..|...|..|.....+....|.
T Consensus 46 ~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 46 ADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988877777663
No 19
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=39.99 E-value=26 Score=26.96 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=10.4
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 038233 117 QLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 117 qLE~sr~kL~qleqelqrar 136 (332)
+||. +|.+.||+++.+.
T Consensus 36 ~LE~---rL~~ae~ra~~ae 52 (60)
T PF11471_consen 36 ALEQ---RLQAAEQRAQAAE 52 (60)
T ss_pred HHHH---HHHHHHHHHHHHH
Confidence 3555 6666666666554
No 20
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=39.86 E-value=3.1e+02 Score=31.23 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038233 181 MCELRAAVQEHLPENELRLYVDNCLAHYDEIMNLKGMVAKTD 222 (332)
Q Consensus 181 l~ELR~AL~~~~~D~eLr~LVd~~msHY~eyf~~Ks~aAk~D 222 (332)
-..|+.||...++|.|+..|.+....--++|.+..+.-+..+
T Consensus 509 Q~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 509 QDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 356888888889999999999999999999999888766655
No 21
>PRK11702 hypothetical protein; Provisional
Probab=38.89 E-value=15 Score=31.65 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHHHH
Q 038233 105 RKSRLRKKAYVQQL 118 (332)
Q Consensus 105 RkSRlRKKaYvqqL 118 (332)
|+.|||||=||-..
T Consensus 5 RsRRlRKKL~v~EF 18 (108)
T PRK11702 5 RSRRLRKKMHIDEF 18 (108)
T ss_pred hhHHHHhhhhhHhh
Confidence 68899999987643
No 22
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.76 E-value=1.1e+02 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=17.3
Q ss_pred hHhhhhHHhc-CC----CchHHHHHHhhcCC
Q 038233 234 PAERCFLWLG-GF----RPSELIKVILSQIE 259 (332)
Q Consensus 234 p~ER~FLWIG-Gf----RPS~llkLL~~qLe 259 (332)
+-.+++.||| |+ -..++.+.|-..++
T Consensus 67 ~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~ 97 (129)
T cd00890 67 DDDKVLVDLGTGVYVEKSLEEAIEFLKKRLE 97 (129)
T ss_pred CCCEEEEEecCCEEEEecHHHHHHHHHHHHH
Confidence 5677899999 88 34456666544443
No 23
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=38.22 E-value=92 Score=35.86 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=3.4
Q ss_pred HHHHhhc
Q 038233 132 LQRARTQ 138 (332)
Q Consensus 132 lqrar~Q 138 (332)
++++|.+
T Consensus 520 ~e~~rr~ 526 (1021)
T PTZ00266 520 LEKARRN 526 (1021)
T ss_pred HHHHHhh
Confidence 4455543
No 24
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=36.88 E-value=2.6e+02 Score=23.59 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH-HHhhccceec-ccCCCCCCCCCCCCCC-ChhhhhHHHHHHHHHHHHHHH-HHH
Q 038233 108 RLRKKAYVQQLESSRIKLTQLEQELQ-RARTQGMFFG-GILGGEQGLPVGISNI-SSEAAVFDMEYARWLEVHHRL-MCE 183 (332)
Q Consensus 108 RlRKKaYvqqLE~sr~kL~qleqelq-rar~Qg~~~~-~~~~~~~~~~~~~g~~-~s~aa~F~~fY~rWleeq~r~-l~E 183 (332)
.-.=|+|-+.+.+ --.++.++|. -|.+.|+-+. ...+..+--- ...+ ......||..|-+.+..-++. +..
T Consensus 30 ~~~Vk~~A~~~~~---dh~~~~~~l~~la~~~~v~lp~~~~~~~~~~~--l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~ 104 (139)
T PF13628_consen 30 SPEVKAFAQQMVE---DHTQANQQLAALAAKKGVTLPPTALSAEQQAE--LDRLQKLSGSAFDRAYLDAQIKAHEKALAL 104 (139)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccccccHhhHHH--HHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345689999988 5566677775 4567788776 3222111000 0001 112378999998887665554 444
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHH
Q 038233 184 LRAAVQEHLPENELRLYVDNCLAHYD 209 (332)
Q Consensus 184 LR~AL~~~~~D~eLr~LVd~~msHY~ 209 (332)
+...+.....|.+|+.++...+--..
T Consensus 105 ~~~~~~~~~~~~~lk~~a~~~lp~l~ 130 (139)
T PF13628_consen 105 FEKQLAASGKDPELKAFAQETLPVLE 130 (139)
T ss_pred HHHHhhccCCCHHHHHHHHHHhHHHH
Confidence 44425566678899988877665444
No 25
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=35.82 E-value=42 Score=29.29 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=30.8
Q ss_pred hhHHhcCCCchHHHHHHhhcCCCCcHHHHHhHhhHhHHHH
Q 038233 238 CFLWLGGFRPSELIKVILSQIEPLTEQQILGICGLQQSTQ 277 (332)
Q Consensus 238 ~FLWIGGfRPS~llkLL~~qLepLTeqQL~~I~~Lqqstq 277 (332)
.+.|+ |.+|+++.++-.....|||+..+..+.+|..+..
T Consensus 89 ~l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 89 DLRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred CcEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 46666 6889999874445677999999999999988754
No 26
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.59 E-value=48 Score=33.29 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 038233 110 RKKAYVQQLESSRIKLTQLEQELQRA 135 (332)
Q Consensus 110 RKKaYvqqLE~sr~kL~qleqelqra 135 (332)
.|..||.|||..+-+..|||.+++..
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999864
No 27
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=29.72 E-value=1.2e+02 Score=27.51 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHhcCCCchHHHHHHhhcCCCCcHHHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 038233 240 LWLGGFRPSELIKVILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 303 (332)
Q Consensus 240 LWIGGfRPS~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgme~LQqslAd~~~~~~~ 303 (332)
+|.|+|-|=..= .....| +||+.|...|.++.+.-+ .++.+-+..-..++-+.+.++.+
T Consensus 39 ~~~g~~~~~~~~-~~~~~l-~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~ 97 (160)
T COG3678 39 HHGGQFGPRHQG-GMFKGL-DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQF 97 (160)
T ss_pred ccCCCCCccccc-cccccc-cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCc
Confidence 577877665331 112334 699999999999987766 56666666666777777777655
No 28
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=13 Score=28.25 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=8.5
Q ss_pred HhhhhHHhcCCCch
Q 038233 235 AERCFLWLGGFRPS 248 (332)
Q Consensus 235 ~ER~FLWIGGfRPS 248 (332)
++---.|+||||--
T Consensus 34 ~~~Rs~WLgGWRea 47 (55)
T COG3130 34 LNQRSQWLGGWREA 47 (55)
T ss_pred chHHHHHHHHHHHH
Confidence 34444688888743
No 29
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=28.76 E-value=24 Score=28.84 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=14.2
Q ss_pred hhHHhcCCCchHHHHHHhhcC
Q 038233 238 CFLWLGGFRPSELIKVILSQI 258 (332)
Q Consensus 238 ~FLWIGGfRPS~llkLL~~qL 258 (332)
.+++.+|+||+|++.|=..++
T Consensus 28 ~l~~~tG~R~~El~~l~~~~v 48 (173)
T PF00589_consen 28 LLLLYTGLRPSELLRLRWDDV 48 (173)
T ss_dssp HHHHHHT--HHHHHT-BGGGE
T ss_pred HHHHHHccchhhhhhhhhhhh
Confidence 468899999999999865554
No 30
>PRK14563 ribosome modulation factor; Provisional
Probab=28.70 E-value=22 Score=27.37 Aligned_cols=14 Identities=43% Similarity=0.983 Sum_probs=9.2
Q ss_pred chHhhhhHHhcCCCc
Q 038233 233 SPAERCFLWLGGFRP 247 (332)
Q Consensus 233 Tp~ER~FLWIGGfRP 247 (332)
++.-|. .||||||=
T Consensus 33 ~~~~r~-~Wl~GWRe 46 (55)
T PRK14563 33 TLDARS-QWLGGWRE 46 (55)
T ss_pred CcHHHH-HHHHHHHH
Confidence 334455 89999974
No 31
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.52 E-value=64 Score=24.96 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=14.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhh
Q 038233 115 VQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 115 vqqLE~sr~kL~qleqelqrar~ 137 (332)
|..|+. ++..||.|+.|+++
T Consensus 23 v~EL~~---RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 23 VEELEE---RIALLEAEIARLEA 42 (59)
T ss_pred HHHHHH---HHHHHHHHHHHHHH
Confidence 556666 78888888888874
No 32
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.02 E-value=1.2e+02 Score=29.17 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 038233 101 REAARKSRLRKKAYVQQLESSRIKLTQLEQELQ 133 (332)
Q Consensus 101 REaARkSRlRKKaYvqqLE~sr~kL~qleqelq 133 (332)
.-+|-..=.|||.|-|||+-----|+.||+.+.
T Consensus 60 KR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~ 92 (221)
T KOG1656|consen 60 KRMALQALKRKKRYEKQLAQIDGTLSTIEFQRE 92 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333334446899999998875556666666544
No 33
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=26.76 E-value=56 Score=26.72 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=25.8
Q ss_pred HHHHHHHH-HHHHhhhHHHHHHHHHHHHHhhccceecc
Q 038233 108 RLRKKAYV-QQLESSRIKLTQLEQELQRARTQGMFFGG 144 (332)
Q Consensus 108 RlRKKaYv-qqLE~sr~kL~qleqelqrar~Qg~~~~~ 144 (332)
+||---++ |.||.++..+..||||+.+-|=--+|+-+
T Consensus 24 ~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQT 61 (79)
T PF09036_consen 24 ELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQT 61 (79)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433444 67999999999999999887755566643
No 34
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.58 E-value=1.4e+02 Score=28.01 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=29.8
Q ss_pred HHHhhH-HHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 96 RLAQNR-EAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 96 rLaqNR-EaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
.+.+|+ .+|-..=.|||-|-+||+..--.+..|||-+..
T Consensus 60 ~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~ 99 (191)
T PTZ00446 60 KVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMIN 99 (191)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554 367777778999999999988888888886543
No 35
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=26.37 E-value=28 Score=27.32 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=14.3
Q ss_pred CCcchHhhhhHHhcCCCc
Q 038233 230 LWKSPAERCFLWLGGFRP 247 (332)
Q Consensus 230 ~W~Tp~ER~FLWIGGfRP 247 (332)
.++.-.||+|-||.+||-
T Consensus 45 ~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 45 KRRWVVERTFAWLKRFRR 62 (88)
T ss_pred ccceehhhhhHHHHHcCc
Confidence 344469999999999974
No 36
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=25.85 E-value=2.1e+02 Score=26.07 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=50.7
Q ss_pred HhhhHHHHHHHHHHHHHhhccceecccC-CCCCCCCCCCCCCChh-hhhHHHHHHHHHHHH-HHHHHHHHHHHhccCCch
Q 038233 119 ESSRIKLTQLEQELQRARTQGMFFGGIL-GGEQGLPVGISNISSE-AAVFDMEYARWLEVH-HRLMCELRAAVQEHLPEN 195 (332)
Q Consensus 119 E~sr~kL~qleqelqrar~Qg~~~~~~~-~~~~~~~~~~g~~~s~-aa~F~~fY~rWleeq-~r~l~ELR~AL~~~~~D~ 195 (332)
+...--|.-.|+.|.+-+..-.++..-- .++..+|..++-++.. +..|....++.+++| +.++.+|... +|.
T Consensus 40 ~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~ql~~L~~~-----~d~ 114 (165)
T cd01042 40 DEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAAMACTAAVETVVEEHYNDQLRELPAQ-----PDK 114 (165)
T ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCH
Confidence 3444456777777776654443432100 0111122223344444 488999999999998 6688888532 478
Q ss_pred hHHHHHHHHHH
Q 038233 196 ELRLYVDNCLA 206 (332)
Q Consensus 196 eLr~LVd~~ms 206 (332)
+|+.+|.++..
T Consensus 115 ~l~~~l~~~r~ 125 (165)
T cd01042 115 ELRAIIEQFRD 125 (165)
T ss_pred HHHHHHHHHHH
Confidence 89999998865
No 37
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=25.57 E-value=69 Score=26.65 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhc
Q 038233 114 YVQQLESSRIKLTQLEQELQRARTQ 138 (332)
Q Consensus 114 YvqqLE~sr~kL~qleqelqrar~Q 138 (332)
=||-|+. +++.||-||-.||++
T Consensus 74 aIq~LdK---tIS~LEMELAaARa~ 95 (95)
T PF13334_consen 74 AIQSLDK---TISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHH---HHHHHHHHHHHHhcC
Confidence 3788888 999999999999964
No 38
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=25.49 E-value=85 Score=28.68 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCChh-hhhHHHHHHHHHHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 038233 157 SNISSE-AAVFDMEYARWLEVH-HRLMCELRAAVQEHLPENELRLYVDNCLA 206 (332)
Q Consensus 157 g~~~s~-aa~F~~fY~rWleeq-~r~l~ELR~AL~~~~~D~eLr~LVd~~ms 206 (332)
+-++.. +..|....+.++++| +.+|.+|..-- ...|.+|+.+|.++..
T Consensus 82 al~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~--~~~d~~l~~~i~~~r~ 131 (172)
T PF03232_consen 82 ALLGDKAAMACTAAVETVVEEHYNDQLRELPAMG--EEEDPELRAIIEQFRD 131 (172)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHH
Confidence 334443 478999999999998 67899986532 2457789988888764
No 39
>PRK04940 hypothetical protein; Provisional
Probab=25.13 E-value=69 Score=29.54 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038233 169 EYARWLEVHHRLMCELRAAV 188 (332)
Q Consensus 169 fY~rWleeq~r~l~ELR~AL 188 (332)
||+.|+.++.. +|+.|
T Consensus 72 yyA~~La~~~g----~~aVL 87 (180)
T PRK04940 72 YWAERIGFLCG----IRQVI 87 (180)
T ss_pred HHHHHHHHHHC----CCEEE
Confidence 78888887633 45554
No 40
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.12 E-value=2e+02 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 99 QNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 99 qNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~ 137 (332)
...-.+||++.|....-+.||+-+.++..|++++++-.+
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677888888777778888888899999999887554
No 41
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.55 E-value=2.3e+02 Score=25.42 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=21.3
Q ss_pred hHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 038233 91 PKTLRRLAQNREAARKSRLRKKAYVQQLES 120 (332)
Q Consensus 91 ~k~~rrLaqNREaARkSRlRKKaYvqqLE~ 120 (332)
-|-.||---||=-|-.+|.++=---.+||+
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~ 81 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEK 81 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 466788888999999988875444444555
No 42
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=23.72 E-value=2.1e+02 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=17.5
Q ss_pred chHhhhhHHhcCCCchHHHHH
Q 038233 233 SPAERCFLWLGGFRPSELIKV 253 (332)
Q Consensus 233 Tp~ER~FLWIGGfRPS~llkL 253 (332)
.=+|..+-+|-+|+|+..+..
T Consensus 93 kdfd~A~~~I~~W~p~~~l~~ 113 (116)
T PF10552_consen 93 KDFDEALEFINNWEPSTALKM 113 (116)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 347889999999999987764
No 43
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=23.71 E-value=4.1e+02 Score=24.05 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=51.1
Q ss_pred HHHHhhhHHHHHHHHHHHH-HhhccceecccCCCCCCCCCCCCCCChhhhhHH---HHHHHHHHHHHHHHHHHHHHHhcc
Q 038233 116 QQLESSRIKLTQLEQELQR-ARTQGMFFGGILGGEQGLPVGISNISSEAAVFD---MEYARWLEVHHRLMCELRAAVQEH 191 (332)
Q Consensus 116 qqLE~sr~kL~qleqelqr-ar~Qg~~~~~~~~~~~~~~~~~g~~~s~aa~F~---~fY~rWleeq~r~l~ELR~AL~~~ 191 (332)
++|+. +|.+|+++... .++.|.....- | +...|. ..+.-.+.|-+..+..|..+...+
T Consensus 2 ~~L~~---~l~~L~~~~~~~d~~~~~~~~~~---------F------d~~LF~~~~~~L~~yl~Ei~~~l~~L~~~~~~~ 63 (173)
T PF07445_consen 2 QQLEQ---QLQQLAQQAAQLDRQRGEQHQAR---------F------DRQLFSCRSQRLSDYLQEIEQTLAQLQQQVEQN 63 (173)
T ss_pred hHHHH---HHHHHHHHHHHHhhcccccchhh---------c------cHHHHhccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666 88888888763 33332222110 0 112333 234456778888899998887655
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhh
Q 038233 192 LPENELRLYVDNCLAHYDEIMNLKG 216 (332)
Q Consensus 192 ~~D~eLr~LVd~~msHY~eyf~~Ks 216 (332)
.. ....-+++++.+.+..+.+.=.
T Consensus 64 ~~-~~~~~laEkL~~Q~~AL~r~l~ 87 (173)
T PF07445_consen 64 RL-QQVAFLAEKLVAQIEALQRELA 87 (173)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4567799999999988766543
No 44
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=23.30 E-value=3e+02 Score=25.76 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=44.1
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHhccCC--c--------hhHHHHHHHHHHHHHHHHHhhhhh----hcccchhhh
Q 038233 164 AVFD-MEYARWLEVHHRLMCELRAAVQEHLP--E--------NELRLYVDNCLAHYDEIMNLKGMV----AKTDVFHLV 227 (332)
Q Consensus 164 a~F~-~fY~rWleeq~r~l~ELR~AL~~~~~--D--------~eLr~LVd~~msHY~eyf~~Ks~a----Ak~DVf~l~ 227 (332)
..|. .|+++|..+=.....-|+.++..-.. + .|.-..+...+.+|+.||..-..+ -..+||.++
T Consensus 92 ~~f~t~f~ek~~ReId~t~e~l~k~~~e~~~~~~~~~~~~~~ke~~~~l~~~l~~~~~~~~ll~~l~e~~~~~ev~k~l 170 (177)
T COG1510 92 QIFRTLFEEKWKREIDPTKEALKKLLEELNEDLDDRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEFLESEEVFKYL 170 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 58999999998888888888754221 1 345567788889999999876633 234666654
No 45
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=23.09 E-value=79 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Q 038233 162 EAAVFDMEYARWLEVHHRLMCELRAAVQEHLPENELRLYVD 202 (332)
Q Consensus 162 ~aa~F~~fY~rWleeq~r~l~ELR~AL~~~~~D~eLr~LVd 202 (332)
....|...|..|....+.|..+||-.|-......+|..|++
T Consensus 93 i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~~~~eL~~L~~ 133 (208)
T PF14644_consen 93 IQEEFEQQQKQWEQQKDQHEQQLRPNLGHPDNRQELESLCE 133 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHH
Confidence 34679999999999999999999988865555566777665
No 46
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.63 E-value=7.6e+02 Score=28.22 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 038233 93 TLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARTQ 138 (332)
Q Consensus 93 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~Q 138 (332)
+-..|+|-=+|++|-+.+----+.-++.-+..+..+.+||+|||+-
T Consensus 140 veael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 140 VEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777776666666666666888899999999954
No 47
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.07 E-value=2e+02 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHH
Q 038233 107 SRLRKKAYVQQLESSRIKLTQLEQE 131 (332)
Q Consensus 107 SRlRKKaYvqqLE~sr~kL~qleqe 131 (332)
.=.|||.|-+||+.-.-.+.+|||-
T Consensus 66 ~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 66 LLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347788988777766566666654
No 48
>cd01182 INT_REC_C DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family include the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many intergrase/recombinases also have N-terminal domains, which show little sequence or structure similarity.
Probab=21.42 E-value=56 Score=25.64 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.7
Q ss_pred hhHHhcCCCchHHHHHHhhcCC
Q 038233 238 CFLWLGGFRPSELIKVILSQIE 259 (332)
Q Consensus 238 ~FLWIGGfRPS~llkLL~~qLe 259 (332)
.++...|.||+++.+|-..++.
T Consensus 22 ~l~~~~G~R~~ei~~l~~~~v~ 43 (162)
T cd01182 22 LLLLYTGLRVSELLALRWSDID 43 (162)
T ss_pred HHHHHhCCCHHHHhhhehhccc
Confidence 4677899999999998766543
No 49
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=21.27 E-value=1.1e+02 Score=23.24 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhc
Q 038233 114 YVQQLESSRIKLTQLEQELQRARTQ 138 (332)
Q Consensus 114 YvqqLE~sr~kL~qleqelqrar~Q 138 (332)
=-.+|..|..|+..|+.+|++..+.
T Consensus 38 ~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 38 AESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999998754
No 50
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=5.3e+02 Score=22.85 Aligned_cols=93 Identities=26% Similarity=0.353 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCchhHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcCCCcchH
Q 038233 164 AVFDMEYARWLEVHHRLMCELRAAVQ--------EHLPENELRLYVDNCLAHYDEIMNLKGMVAKTDVFHLVSGLWKSPA 235 (332)
Q Consensus 164 a~F~~fY~rWleeq~r~l~ELR~AL~--------~~~~D~eLr~LVd~~msHY~eyf~~Ks~aAk~DVf~l~Sg~W~Tp~ 235 (332)
..|-.-|-+=+..|.-+-.++|+-=. -|.+-+ -.-+..++.-+..|..+-+.-+. ..|.|+-.
T Consensus 10 ~rvrlLYkriLrlHr~lp~~~R~lGD~YVkdEFrrHk~vn--p~~~~~FlteW~~Ya~~l~qql~------~~g~~K~~- 80 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPAELRALGDQYVKDEFRRHKTVN--PLEAQGFLTEWERYAVALSQQLS------SAGKWKGE- 80 (125)
T ss_pred chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHHHhh------hcCccccc-
Confidence 45666788877777777777775421 122111 12356778888888777664333 56888865
Q ss_pred hhhhHHhcCCCchHHHHHHhhcCCCCcHHHHHhHhhHhHHHHH
Q 038233 236 ERCFLWLGGFRPSELIKVILSQIEPLTEQQILGICGLQQSTQE 278 (332)
Q Consensus 236 ER~FLWIGGfRPS~llkLL~~qLepLTeqQL~~I~~Lqqstqq 278 (332)
+|-+=||+.+ |.|+++|+..+++|.+.++.
T Consensus 81 ------~g~~ld~d~l-------e~l~deqi~QLyELm~ea~k 110 (125)
T KOG4100|consen 81 ------IGSDLDSDKL-------EQLSDEQIGQLYELMKEAQK 110 (125)
T ss_pred ------ccccCCHHHH-------HHcCHHHHHHHHHHHHHHHh
Confidence 4777777654 56899999999999998876
No 51
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=21.17 E-value=1.1e+02 Score=23.60 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhh
Q 038233 124 KLTQLEQELQRART 137 (332)
Q Consensus 124 kL~qleqelqrar~ 137 (332)
||.+||++|+.+.+
T Consensus 33 RLa~LE~rL~~ae~ 46 (60)
T PF11471_consen 33 RLAALEQRLQAAEQ 46 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
No 52
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.88 E-value=4.9e+02 Score=29.07 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCcHHHHHhHhhH--hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038233 260 PLTEQQILGICGL--QQSTQEAEDALSQGLEALNQSILDTI 298 (332)
Q Consensus 260 pLTeqQL~~I~~L--qqstqqaEdALSqgme~LQqslAd~~ 298 (332)
.||+.|...|-++ ++=+.-+|.+|.++++.|+...++.-
T Consensus 404 ~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~ 444 (735)
T TIGR01062 404 KLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILE 444 (735)
T ss_pred CCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999665 45556688888888888888777654
No 53
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=20.84 E-value=33 Score=34.82 Aligned_cols=35 Identities=40% Similarity=0.578 Sum_probs=28.6
Q ss_pred CCChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh
Q 038233 88 TPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSR 122 (332)
Q Consensus 88 ~~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr 122 (332)
.+|.+..|=|-.||.||=|+|-|||-.+++||...
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~ 315 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKA 315 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccc
Confidence 45556666677899999999999999999998643
No 54
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.61 E-value=2.8e+02 Score=23.60 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 96 RLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 96 rLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
=++|||-++| .|+|-+-=.|-=+.+......|-.+|+.
T Consensus 54 lmsQNRq~~~-dr~ra~~D~~inl~ae~ei~~l~~~l~~ 91 (108)
T PF06210_consen 54 LMSQNRQAAR-DRLRAELDYQINLKAEQEIERLHRKLDA 91 (108)
T ss_pred HHHhhHhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3569998877 5666554333333334444444444443
Done!