Query 038233
Match_columns 332
No_of_seqs 178 out of 222
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.0 3.9E-10 1.3E-14 83.3 6.1 44 92-138 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.6 5.3E-08 1.8E-12 73.6 5.8 45 89-136 6-50 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.4 4.1E-07 1.4E-11 68.0 6.1 40 92-134 1-40 (62)
4 1t2k_D Cyclic-AMP-dependent tr 98.3 1.1E-06 3.7E-11 65.4 6.1 39 93-134 2-40 (61)
5 2wt7_A Proto-oncogene protein 98.3 1.4E-06 4.7E-11 65.4 6.6 40 92-134 2-41 (63)
6 1gd2_E Transcription factor PA 98.1 3.9E-06 1.3E-10 64.9 5.5 40 92-134 8-47 (70)
7 1ci6_A Transcription factor AT 97.2 0.00037 1.3E-08 52.4 4.5 38 93-133 3-40 (63)
8 3a5t_A Transcription factor MA 95.9 0.003 1E-07 52.4 2.0 42 92-136 37-78 (107)
9 1gu4_A CAAT/enhancer binding p 95.5 0.039 1.3E-06 43.2 6.9 32 89-120 12-43 (78)
10 1hjb_A Ccaat/enhancer binding 94.7 0.079 2.7E-06 42.3 6.8 48 89-136 12-70 (87)
11 2wt7_B Transcription factor MA 87.7 1.4 4.8E-05 35.4 6.6 42 92-136 27-68 (90)
12 3lay_A Zinc resistance-associa 81.7 5 0.00017 35.4 8.0 45 259-303 66-110 (175)
13 1skn_P DNA-binding domain of S 78.8 0.98 3.4E-05 36.6 2.2 30 90-119 60-89 (92)
14 2y39_A Nickel and cobalt resis 78.4 6.9 0.00024 32.9 7.4 53 248-301 9-61 (118)
15 2ksd_A Aerobic respiration con 78.1 0.14 4.9E-06 42.9 -2.9 30 114-143 76-105 (115)
16 2er8_A Regulatory protein Leu3 70.2 2.3 7.9E-05 30.9 2.2 23 111-136 47-69 (72)
17 1zme_C Proline utilization tra 66.8 5.1 0.00017 28.7 3.5 23 112-137 43-65 (70)
18 1hwt_C Protein (heme activator 62.3 3.6 0.00012 30.4 2.0 27 106-135 51-77 (81)
19 3he4_B Synzip5; heterodimeric 58.9 12 0.0004 26.2 3.9 25 112-136 9-33 (46)
20 2c9l_Y EB1, zebra, BZLF1 trans 50.6 19 0.00065 26.8 4.1 38 96-136 5-42 (63)
21 3plt_A Sphingolipid long chain 48.7 27 0.00092 32.4 5.8 42 99-140 100-148 (234)
22 4abm_A Charged multivesicular 44.9 35 0.0012 26.4 5.0 35 99-133 42-76 (79)
23 1pyi_A Protein (pyrimidine pat 43.7 18 0.00061 27.4 3.2 22 112-136 47-68 (96)
24 4i0x_B ESAT-6-like protein MAB 43.4 95 0.0032 23.8 7.5 50 113-182 25-74 (103)
25 1hlo_A Protein (transcription 43.4 15 0.0005 27.9 2.7 24 113-139 57-80 (80)
26 3coq_A Regulatory protein GAL4 40.3 24 0.0008 26.2 3.4 22 112-136 44-65 (89)
27 1k1f_A Breakpoint cluster regi 40.0 16 0.00055 28.1 2.4 29 116-144 33-61 (72)
28 2kz5_A Transcription factor NF 39.6 4.6 0.00016 32.6 -0.7 21 92-112 66-86 (91)
29 2p7v_A Regulator of sigma D; R 39.3 88 0.003 27.3 7.3 31 244-275 82-112 (158)
30 2fmm_E Protein EMSY; ENT domai 36.6 95 0.0033 26.5 6.9 31 175-207 37-67 (133)
31 2vs0_A Virulence factor ESXA; 31.5 1.5E+02 0.0051 21.5 8.2 65 89-185 6-70 (97)
32 1d66_A Protein (GAL4); protein 30.6 19 0.00064 25.2 1.3 15 112-129 51-65 (66)
33 1s16_A Topoisomerase IV subuni 29.7 14 0.00048 35.8 0.7 15 98-112 376-390 (390)
34 3i00_A HIP-I, huntingtin-inter 28.7 41 0.0014 27.9 3.3 28 108-138 35-62 (120)
35 2ke4_A CDC42-interacting prote 28.4 2E+02 0.0067 23.0 7.2 62 259-327 9-75 (98)
36 3e1r_A Centrosomal protein of 28.1 35 0.0012 25.4 2.4 36 99-137 14-55 (58)
37 2c35_A Human RPB4, DNA-directe 23.6 76 0.0026 27.0 4.1 77 194-272 64-143 (152)
38 1js9_A Coat protein, capsid pr 22.4 18 0.00063 32.1 0.0 15 98-112 12-26 (189)
39 1nkp_B MAX protein, MYC proto- 21.8 68 0.0023 24.2 3.1 22 113-137 47-68 (83)
40 3fav_B ESAT-6, 6 kDa early sec 21.4 2.4E+02 0.0083 20.5 8.1 50 113-184 19-68 (94)
41 1nlw_A MAD protein, MAX dimeri 20.4 81 0.0028 24.1 3.3 22 113-137 47-68 (80)
42 1gmj_A ATPase inhibitor; coile 20.2 1.9E+02 0.0067 22.8 5.5 27 109-136 45-71 (84)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.02 E-value=3.9e-10 Score=83.28 Aligned_cols=44 Identities=43% Similarity=0.573 Sum_probs=39.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARTQ 138 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~Q 138 (332)
|-.+|+..|||+|+.||.|||+||+.||. ++.+||.|-...+.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 899999998877754
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.60 E-value=5.3e-08 Score=73.63 Aligned_cols=45 Identities=33% Similarity=0.359 Sum_probs=32.8
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
++|+..+|-++||||||+||.||++|+..||. ++.+|+.|-...+
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNYHLE 50 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45567788889999999999999999999999 6666655544433
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.41 E-value=4.1e-07 Score=67.99 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=33.4
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
|..||..+||+||+|||.|||.|++.||. ++..|+.+-..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~ 40 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE 40 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 46789999999999999999999999999 66666655443
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.30 E-value=1.1e-06 Score=65.36 Aligned_cols=39 Identities=36% Similarity=0.449 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 93 TLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 93 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
-.+||-.||+||.|||.|||.|++.||. ++..|+.+-..
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~~ 40 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNGQ 40 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4689999999999999999999999999 56555555443
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.29 E-value=1.4e-06 Score=65.45 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=33.7
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
|-.+|+-.||+||+|||.|||.|++.||. ++.+|+.+-..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~ 41 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSA 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56789999999999999999999999999 66666655443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.10 E-value=3.9e-06 Score=64.92 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQR 134 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqr 134 (332)
...+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 8 ~~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 8 PSSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34789999999999999999999999999 88888876554
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=97.18 E-value=0.00037 Score=52.35 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=28.0
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 038233 93 TLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQ 133 (332)
Q Consensus 93 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelq 133 (332)
-.|+.-+||.||+++|.|||.+++.||. ++..|+++-.
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~ 40 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNE 40 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4577889999999999999999999998 5555555543
No 8
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.86 E-value=0.003 Score=52.38 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=35.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
|-.||--.||++|+.||.||.+.+..||. .+.+|.+|+++-+
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 77899999999999999999999999998 6666666655544
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=95.45 E-value=0.039 Score=43.25 Aligned_cols=32 Identities=25% Similarity=0.141 Sum_probs=27.7
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLES 120 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~ 120 (332)
-|++-..|--.|.+||+|||-.+|.-.+.++.
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~ 43 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQH 43 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46777788889999999999999998888855
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.73 E-value=0.079 Score=42.33 Aligned_cols=48 Identities=29% Similarity=0.245 Sum_probs=34.5
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHh
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLES-----------SRIKLTQLEQELQRAR 136 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~-----------sr~kL~qleqelqrar 136 (332)
-|++-..|--.|.+||||||-.+|.=.+.++. -+.++.+|+.|++..|
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999987777754 1223445555555555
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=87.69 E-value=1.4 Score=35.44 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=32.8
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
|-.||--.||-+|..+|-||-.-+..||. ...+|-.|++.-+
T Consensus 27 Kq~RRtlKNRgyAq~CR~Kr~~q~~~LE~---e~~~L~~e~~~L~ 68 (90)
T 2wt7_B 27 KQKRRTLKNRGYAQSCRYKRVQQKHHLEN---EKTQLIQQVEQLK 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 66788899999999999999999999998 4444444444433
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=81.75 E-value=5 Score=35.39 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=39.6
Q ss_pred CCCcHHHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 038233 259 EPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSL 303 (332)
Q Consensus 259 epLTeqQL~~I~~LqqstqqaEdALSqgme~LQqslAd~~~~~~~ 303 (332)
-+||++|..+|..|+++.+.+-.+|.+.|...++.|-+.+.++.+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~ 110 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSP 110 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 379999999999999999999999999999999999988876544
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=78.79 E-value=0.98 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=23.8
Q ss_pred ChHHHHHHHhhHHHHHHhHHHHHHHHHHHH
Q 038233 90 DPKTLRRLAQNREAARKSRLRKKAYVQQLE 119 (332)
Q Consensus 90 d~k~~rrLaqNREaARkSRlRKKaYvqqLE 119 (332)
.-+-.||=..||.||+++|.||..-+..||
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 346678889999999999999987665554
No 14
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=78.43 E-value=6.9 Score=32.86 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=46.5
Q ss_pred hHHHHHHhhcCCCCcHHHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 038233 248 SELIKVILSQIEPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTIASD 301 (332)
Q Consensus 248 S~llkLL~~qLepLTeqQL~~I~~LqqstqqaEdALSqgme~LQqslAd~~~~~ 301 (332)
+.+=.+|..+| +||+.|...|..+..+-.....+|..+|..-...|++++...
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~ 61 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN 61 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445677788 799999999999999999999999999999999999999754
No 15
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=78.11 E-value=0.14 Score=42.94 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhccceec
Q 038233 114 YVQQLESSRIKLTQLEQELQRARTQGMFFG 143 (332)
Q Consensus 114 YvqqLE~sr~kL~qleqelqrar~Qg~~~~ 143 (332)
-|+|||.||.+|+++=.+|++.|+|..++.
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999988775
No 16
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=70.21 E-value=2.3 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 111 KKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 111 KKaYvqqLE~sr~kL~qleqelqrar 136 (332)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999998654
No 17
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=66.82 E-value=5.1 Score=28.71 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 112 KAYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 112 KaYvqqLE~sr~kL~qleqelqrar~ 137 (332)
+.||++||. ++.+||+.|...++
T Consensus 43 ~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 469999999 99999999987764
No 18
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=62.31 E-value=3.6 Score=30.37 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 038233 106 KSRLRKKAYVQQLESSRIKLTQLEQELQRA 135 (332)
Q Consensus 106 kSRlRKKaYvqqLE~sr~kL~qleqelqra 135 (332)
+.++.++.||+.||. +|.+||..|+..
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 445667789999999 999999888754
No 19
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=58.92 E-value=12 Score=26.21 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 112 KAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 112 KaYvqqLE~sr~kL~qleqelqrar 136 (332)
|-|||.||.--..|..|..-|.-|+
T Consensus 9 knyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 6899999998888888888777766
No 20
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=50.56 E-value=19 Score=26.82 Aligned_cols=38 Identities=39% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 96 RLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 96 rLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
+--.||-|+||+|-+=| ++||--|---+---.|-.|.|
T Consensus 5 kryknr~asrk~rakfk---n~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFK---QLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchHHH
Confidence 33469999999998755 556555544444445555555
No 21
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=48.67 E-value=27 Score=32.36 Aligned_cols=42 Identities=36% Similarity=0.485 Sum_probs=29.1
Q ss_pred hhHHHH-HHhHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhhccc
Q 038233 99 QNREAA-RKSRLRKKAYVQQLESSR------IKLTQLEQELQRARTQGM 140 (332)
Q Consensus 99 qNREaA-RkSRlRKKaYvqqLE~sr------~kL~qleqelqrar~Qg~ 140 (332)
+|||.. .-+|-||+.-..++..-. .||..|||||.||-+..+
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 688876 556666666555554211 478999999999997653
No 22
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=44.93 E-value=35 Score=26.37 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=27.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 038233 99 QNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQ 133 (332)
Q Consensus 99 qNREaARkSRlRKKaYvqqLE~sr~kL~qleqelq 133 (332)
-|+.+|-..=-|||-|=+||+.----+.+||+-+.
T Consensus 42 knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 42 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667888999999998889999998764
No 23
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.70 E-value=18 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 112 KAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 112 KaYvqqLE~sr~kL~qleqelqrar 136 (332)
+.||+.||. +|.+||..|+...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 469999999 9999999998754
No 24
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=43.43 E-value=95 Score=23.76 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=36.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhccceecccCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 038233 113 AYVQQLESSRIKLTQLEQELQRARTQGMFFGGILGGEQGLPVGISNISSEAAVFDMEYARWLEVHHRLMC 182 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~Qg~~~~~~~~~~~~~~~~~g~~~s~aa~F~~fY~rWleeq~r~l~ 182 (332)
.+..+|+. .|.+|+..++..+..|..-| .....|...+.+|-....+...
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G-----------------~A~~ay~~~~~~W~~~a~~l~~ 74 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG-----------------AAAAAYSQAHKEWMDAARELVE 74 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec-----------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888 89999999998886653322 2458899999999776554433
No 25
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.35 E-value=15 Score=27.86 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=20.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 038233 113 AYVQQLESSRIKLTQLEQELQRARTQG 139 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~Qg 139 (332)
.||..|+. ++..|+.|++..++|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999999 8889999999888764
No 26
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=40.27 E-value=24 Score=26.15 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 112 KAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 112 KaYvqqLE~sr~kL~qleqelqrar 136 (332)
+.||+.||. +|.+||..|+...
T Consensus 44 ~~~~~~L~~---r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVES---RLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHc
Confidence 469999999 9999999998754
No 27
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=39.98 E-value=16 Score=28.14 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccceecc
Q 038233 116 QQLESSRIKLTQLEQELQRARTQGMFFGG 144 (332)
Q Consensus 116 qqLE~sr~kL~qleqelqrar~Qg~~~~~ 144 (332)
|.||.+|-.+..||||+.+-|=-=||+-+
T Consensus 33 qeLe~Ck~sIrrLE~evn~ErFrmIYLQT 61 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQERFRMIYLQT 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 67999999999999999888755556543
No 28
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=39.58 E-value=4.6 Score=32.62 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHhHHHHH
Q 038233 92 KTLRRLAQNREAARKSRLRKK 112 (332)
Q Consensus 92 k~~rrLaqNREaARkSRlRKK 112 (332)
+-.||=.-||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456888899999999999974
No 29
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=39.35 E-value=88 Score=27.33 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=24.1
Q ss_pred CCCchHHHHHHhhcCCCCcHHHHHhHhhHhHH
Q 038233 244 GFRPSELIKVILSQIEPLTEQQILGICGLQQS 275 (332)
Q Consensus 244 GfRPS~llkLL~~qLepLTeqQL~~I~~Lqqs 275 (332)
|..+-.+.+-|||.|+. |-++++..++-.-.
T Consensus 82 g~~~l~la~~iyp~i~~-tTe~~l~FnDky~~ 112 (158)
T 2p7v_A 82 GNGQLARAAKIWPQLEA-NTQQIMDYYDSSLE 112 (158)
T ss_dssp SHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhhhhh-hhHHHHHhcccccc
Confidence 66688899999999964 77778888777643
No 30
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=36.61 E-value=95 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 038233 175 EVHHRLMCELRAAVQEHLPENELRLYVDNCLAH 207 (332)
Q Consensus 175 eeq~r~l~ELR~AL~~~~~D~eLr~LVd~~msH 207 (332)
.+++.+|.+||..| +++|++.+..+.++.+.
T Consensus 37 weke~LLt~LR~~L--~IS~eeH~~elrr~~sD 67 (133)
T 2fmm_E 37 KEKKDLLGELSKVL--SISTERHRAEVRRAVND 67 (133)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHhhhH
Confidence 35889999999988 67888888877776654
No 31
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=31.50 E-value=1.5e+02 Score=21.53 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=40.9
Q ss_pred CChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccceecccCCCCCCCCCCCCCCChhhhhHHH
Q 038233 89 PDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARTQGMFFGGILGGEQGLPVGISNISSEAAVFDM 168 (332)
Q Consensus 89 ~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~Qg~~~~~~~~~~~~~~~~~g~~~s~aa~F~~ 168 (332)
.|+..++..|.. ++ ....+|+. .|.+|++.++... + ...| .....|..
T Consensus 6 v~~~~l~~~A~~--------~~--~~~~~l~~---~l~~L~~~~~~L~--~-~W~G----------------~a~~af~~ 53 (97)
T 2vs0_A 6 MSPEEIRAKSQS--------YG--QGSDQIRQ---ILSDLTRAQGEIA--A-NWEG----------------QAFSRFEE 53 (97)
T ss_dssp SCHHHHHHHHHH--------HH--HHHHHHHH---HHHHHHHHHHHHH--H-HSCS----------------STTHHHHH
T ss_pred cCHHHHHHHHHH--------HH--HHHHHHHH---HHHHHHHHHHHHh--c-ccCc----------------HHHHHHHH
Confidence 566677777642 22 45566666 7777887777654 1 2221 12477999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038233 169 EYARWLEVHHRLMCELR 185 (332)
Q Consensus 169 fY~rWleeq~r~l~ELR 185 (332)
.|.+|.....+....|.
T Consensus 54 ~~~~~~~~~~~~~~~L~ 70 (97)
T 2vs0_A 54 QFQQLSPKVEKFAQLLE 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988887766665553
No 32
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=30.63 E-value=19 Score=25.18 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 038233 112 KAYVQQLESSRIKLTQLE 129 (332)
Q Consensus 112 KaYvqqLE~sr~kL~qle 129 (332)
+.||++||. +|.+||
T Consensus 51 ~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVES---RLERLE 65 (66)
T ss_dssp HHHHHHHHH---HHTTC-
T ss_pred HHHHHHHHH---HHHHHc
Confidence 479999999 888887
No 33
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=29.71 E-value=14 Score=35.84 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=6.9
Q ss_pred HhhHHHHHHhHHHHH
Q 038233 98 AQNREAARKSRLRKK 112 (332)
Q Consensus 98 aqNREaARkSRlRKK 112 (332)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 478999999999886
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.67 E-value=41 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 038233 108 RLRKKAYVQQLESSRIKLTQLEQELQRARTQ 138 (332)
Q Consensus 108 RlRKKaYvqqLE~sr~kL~qleqelqrar~Q 138 (332)
.+.--.||-+|+. ++++||.||...|.+
T Consensus 35 ~~E~q~~v~ql~~---~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 35 KTESQRVVLQLKG---HVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444579999999 999999999988843
No 35
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.43 E-value=2e+02 Score=22.96 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCCcHHHH-----HhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccchHHHHHHHHHhHHhhh
Q 038233 259 EPLTEQQI-----LGICGLQQSTQEAEDALSQGLEALNQSILDTIASDSLSCPPNMANYMGQMAVAMNKLSTLE 327 (332)
Q Consensus 259 epLTeqQL-----~~I~~LqqstqqaEdALSqgme~LQqslAd~~~~~~~~~~~~~~~~~~~m~~a~~kl~~le 327 (332)
+.|.++|. .+|++|++.+.++.++ .+||.+++....+....| ++..+ -++|+..-.||..|.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~G---D~~s~---~~~L~e~~~kid~L~ 75 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQMG---DPASL---EPQIAETLSNIERLK 75 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGGC---CGGGS---HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccC---CHHHH---HHHHHHHHHHHHHHH
Confidence 44555554 3567888888777777 788999998888877643 33323 567777666666654
No 36
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=28.15 E-value=35 Score=25.42 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=23.2
Q ss_pred hhHHHHHHhH------HHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 99 QNREAARKSR------LRKKAYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 99 qNREaARkSR------lRKKaYvqqLE~sr~kL~qleqelqrar~ 137 (332)
|-|.|-+|-+ +-+.|||+-|+. |+-.|||.++.|.+
T Consensus 14 qLkDaleknqqWlvydqqReayV~gll~---~i~eleq~~~~a~~ 55 (58)
T 3e1r_A 14 QLKDALEKNQQWLVYDQQREVYVKGLLA---KIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC----
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 3355555544 345689999998 88999998877653
No 37
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=23.62 E-value=76 Score=27.00 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcCCCcchHhhhhHHhcCCCchHH--HHHHhhcCC-CCcHHHHHhHh
Q 038233 194 ENELRLYVDNCLAHYDEIMNLKGMVAKTDVFHLVSGLWKSPAERCFLWLGGFRPSEL--IKVILSQIE-PLTEQQILGIC 270 (332)
Q Consensus 194 D~eLr~LVd~~msHY~eyf~~Ks~aAk~DVf~l~Sg~W~Tp~ER~FLWIGGfRPS~l--lkLL~~qLe-pLTeqQL~~I~ 270 (332)
+.++..++.+.+.|....-+.|..-.-..|...+...=.+++|.+- |+-.+|... ++.|++.++ -+|+.+|..|-
T Consensus 64 ~~els~v~~kTl~Yl~~F~k~k~~e~~~~l~e~L~~~~L~~~E~a~--L~NL~P~t~dEar~lipsl~~r~sdEeLe~IL 141 (152)
T 2c35_A 64 EQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELAC--LANLCPETAEESKALIPSLEGRFEDEELQQIL 141 (152)
T ss_dssp SCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHHH--HHHHCCSSHHHHHHHCGGGTTTSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHH--hccCCCCCHHHHHHHHHhhccCCCHHHHHHHH
Confidence 3567778888888887776665544444566777766688888876 477888755 577788887 58898888875
Q ss_pred hH
Q 038233 271 GL 272 (332)
Q Consensus 271 ~L 272 (332)
++
T Consensus 142 d~ 143 (152)
T 2c35_A 142 DD 143 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 38
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=22.36 E-value=18 Score=32.15 Aligned_cols=15 Identities=47% Similarity=0.652 Sum_probs=0.0
Q ss_pred HhhHHHHHHhHHHHH
Q 038233 98 AQNREAARKSRLRKK 112 (332)
Q Consensus 98 aqNREaARkSRlRKK 112 (332)
||.|.+||+-|++||
T Consensus 12 aQRRaaaR~nr~~~~ 26 (189)
T 1js9_A 12 AQRRAAARRNRWTAR 26 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhhhhcc
Confidence 788999999999887
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.79 E-value=68 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 113 AYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~ 137 (332)
.||..|+. +...|+.|++..+.
T Consensus 47 ~YI~~L~~---~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 47 EYIQYMRR---KNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 58888887 55555555555543
No 40
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.39 E-value=2.4e+02 Score=20.53 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=31.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhccceecccCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 038233 113 AYVQQLESSRIKLTQLEQELQRARTQGMFFGGILGGEQGLPVGISNISSEAAVFDMEYARWLEVHHRLMCEL 184 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~Qg~~~~~~~~~~~~~~~~~g~~~s~aa~F~~fY~rWleeq~r~l~EL 184 (332)
.+..+|+. .|.+|+.+++.... ...| .....|...+.+|-....+...-|
T Consensus 19 ~~~~~i~~---~l~~l~~~v~~l~~---~W~G----------------~A~~af~~~~~~w~~~~~~~~~~L 68 (94)
T 3fav_B 19 GNVTSIHS---LLDEGKQSLTKLAA---AWGG----------------SGSEAYQGVQQKWDATATELNNAL 68 (94)
T ss_dssp HHHHHHHH---HHHHHHHHHHHTGG---GGTC----------------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHc---ccCc----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666776 77777777776541 1221 234789999999987665443333
No 41
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.43 E-value=81 Score=24.11 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=15.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 113 AYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~ 137 (332)
.||++|+. +..+|++|.+..|.
T Consensus 47 ~yI~~L~~---~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 47 LHIKKLED---SDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 79999999 55555666655553
No 42
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.20 E-value=1.9e+02 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 109 LRKKAYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 109 lRKKaYvqqLE~sr~kL~qleqelqrar 136 (332)
||||. ..+|+--.-.+..||.++.|-+
T Consensus 45 LKkkl-~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 45 LKKHK-ENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 5666666667777777777654
Done!