Query 038233
Match_columns 332
No_of_seqs 178 out of 222
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 53.1 4.2 0.00031 29.9 2.8 20 93-112 49-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 52.1 3.8 0.00028 29.5 2.4 30 114-143 31-60 (67)
3 d1uz3a1 a.283.1.1 (A:13-102) E 40.4 39 0.0028 25.3 6.7 30 176-207 34-63 (90)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 37.9 12 0.00088 25.4 3.1 22 113-137 33-54 (61)
5 d1wa8a1 a.25.3.1 (A:1-99) ESAT 37.0 62 0.0045 22.6 9.7 70 88-189 4-76 (99)
6 d2c35a1 a.60.8.2 (A:14-142) RN 36.2 14 0.001 28.6 3.6 78 193-272 40-120 (129)
7 d1zbdb_ g.50.1.1 (B:) Effector 24.0 40 0.0029 25.4 4.4 40 259-298 1-40 (124)
8 d1urfa_ a.2.6.1 (A:) Protein k 20.1 34 0.0025 24.8 3.0 28 113-140 46-74 (81)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 18.5 44 0.0032 23.6 3.3 21 113-136 52-72 (88)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 17.5 46 0.0033 23.0 3.1 21 113-136 47-67 (79)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=53.06 E-value=4.2 Score=29.87 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.5
Q ss_pred HHHHHHhhHHHHHHhHHHHH
Q 038233 93 TLRRLAQNREAARKSRLRKK 112 (332)
Q Consensus 93 ~~rrLaqNREaARkSRlRKK 112 (332)
-.||=.-|+-||+.+|.||-
T Consensus 49 DIRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 49 KIRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhhh
Confidence 34888999999999999974
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.09 E-value=3.8 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=24.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhccceec
Q 038233 114 YVQQLESSRIKLTQLEQELQRARTQGMFFG 143 (332)
Q Consensus 114 YvqqLE~sr~kL~qleqelqrar~Qg~~~~ 143 (332)
--|.||.+|..|..|||||.+-|=.-+|+-
T Consensus 31 iE~eLerCk~~irrLeqel~~ErF~~iYLQ 60 (67)
T d1k1fa_ 31 IEQELERAKASIRRLEQEVNQERFRMIYLQ 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999988775555554
No 3
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.36 E-value=39 Score=25.28 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 038233 176 VHHRLMCELRAAVQEHLPENELRLYVDNCLAH 207 (332)
Q Consensus 176 eq~r~l~ELR~AL~~~~~D~eLr~LVd~~msH 207 (332)
+...++.+||..| +++|++.+..|.++.+.
T Consensus 34 eke~lLt~LR~~L--~IS~eeHr~elrr~~~D 63 (90)
T d1uz3a1 34 EKKDLLGELSKVL--SISTERHRAEVRRAVND 63 (90)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHhccH
Confidence 4778889999887 66777777777777654
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.85 E-value=12 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 038233 113 AYVQQLESSRIKLTQLEQELQRART 137 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar~ 137 (332)
.||+.|+. +...|++|....|.
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 69999999 77777778776654
No 5
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.97 E-value=62 Score=22.57 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=44.3
Q ss_pred CCChHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccceecccCCCCCCCCCCCCCCChhhhhHH
Q 038233 88 TPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARTQGMFFGGILGGEQGLPVGISNISSEAAVFD 167 (332)
Q Consensus 88 ~~d~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqelqrar~Qg~~~~~~~~~~~~~~~~~g~~~s~aa~F~ 167 (332)
..|+-++++.|.+=+ .....|+. .|..|++.+.... +-.- +.....|.
T Consensus 4 kvd~~~l~~~A~~~~----------~~~~~l~~---~l~~l~~~v~~l~--~~W~-----------------G~A~~af~ 51 (99)
T d1wa8a1 4 KTDAATLAQEAGNFE----------RISGDLKT---QIDQVESTAGSLQ--GQWR-----------------GAAGTAAQ 51 (99)
T ss_dssp SSCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHH--TSCC-----------------SSHHHHHH
T ss_pred ccCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHH--HHhh-----------------hhHHHHHH
Confidence 368889999986532 34455555 7777777776654 1111 22458899
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHh
Q 038233 168 MEYARWLEVHHRLM---CELRAAVQ 189 (332)
Q Consensus 168 ~fY~rWleeq~r~l---~ELR~AL~ 189 (332)
..|.+|-..-.++. .++...|.
T Consensus 52 ~~~~~w~~~~~~l~~~L~~i~~~L~ 76 (99)
T d1wa8a1 52 AAVVRFQEAANKQKQELDEISTNIR 76 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987765544 44444553
No 6
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.22 E-value=14 Score=28.58 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=58.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcCCCcchHhhhhHHhcCCCchHH--HHHHhhcCC-CCcHHHHHhH
Q 038233 193 PENELRLYVDNCLAHYDEIMNLKGMVAKTDVFHLVSGLWKSPAERCFLWLGGFRPSEL--IKVILSQIE-PLTEQQILGI 269 (332)
Q Consensus 193 ~D~eLr~LVd~~msHY~eyf~~Ks~aAk~DVf~l~Sg~W~Tp~ER~FLWIGGfRPS~l--lkLL~~qLe-pLTeqQL~~I 269 (332)
.+.+|..+..+.+.|-....+.+..-+...|..+++..=.+.+|.+- |+-.+|+.+ ++.|++.++ -+|+.++..|
T Consensus 40 ~~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~~--i~Nl~P~~~~El~~li~~l~~r~see~l~~i 117 (129)
T d2c35a1 40 DEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELAC--LANLCPETAEESKALIPSLEGRFEDEELQQI 117 (129)
T ss_dssp SSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHHH--HHHHCCSSHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHHH--HhCCCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 35678888899998776655566777777888888877788888874 577788754 456778886 5899888877
Q ss_pred hhH
Q 038233 270 CGL 272 (332)
Q Consensus 270 ~~L 272 (332)
-+.
T Consensus 118 Ld~ 120 (129)
T d2c35a1 118 LDD 120 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 7
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.98 E-value=40 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCCcHHHHHhHhhHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038233 259 EPLTEQQILGICGLQQSTQEAEDALSQGLEALNQSILDTI 298 (332)
Q Consensus 259 epLTeqQL~~I~~LqqstqqaEdALSqgme~LQqslAd~~ 298 (332)
++||+++...|.++=++-...|..-.+.+.+|.+.+.+.-
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~ 40 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMR 40 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789988888888777777777777788888888876654
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=34 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.0
Q ss_pred HHH-HHHHhhhHHHHHHHHHHHHHhhccc
Q 038233 113 AYV-QQLESSRIKLTQLEQELQRARTQGM 140 (332)
Q Consensus 113 aYv-qqLE~sr~kL~qleqelqrar~Qg~ 140 (332)
+.+ +.|..|..||..|.++|++++|.+.
T Consensus 46 ~eaq~~l~eS~~Ki~lLr~~L~~~~q~~~ 74 (81)
T d1urfa_ 46 LTAQQMLQDSKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344 4588999999999999999998753
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.52 E-value=44 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 113 AYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar 136 (332)
.||++|+. ++..|+.++...+
T Consensus 52 ~yI~~L~~---~~~~l~~~~~~l~ 72 (88)
T d1nkpa_ 52 AYILSVQA---EEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 68998887 4555555544433
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.52 E-value=46 Score=22.99 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=15.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 038233 113 AYVQQLESSRIKLTQLEQELQRAR 136 (332)
Q Consensus 113 aYvqqLE~sr~kL~qleqelqrar 136 (332)
.||++|+. ++..|+++.+..+
T Consensus 47 ~yI~~L~~---~~~~l~~~~~~L~ 67 (79)
T d1nlwa_ 47 LHIKKLED---SDRKAVHQIDQLQ 67 (79)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 69999998 6666666665544
Done!