BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038234
         (406 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|C Chain C, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
 pdb|4A0M|D Chain D, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
           Spinach In Complex With Nad
          Length = 496

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 110 MGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLD 169
           + G+G    A +  +    ++A    +A G +   + S   LV+ ++  + GK  +VV +
Sbjct: 211 LTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKV--MASAAQLVKPVTLELGGKSPIVVFE 268

Query: 170 DVWTDDYTKWEPFQRCSANGQ-CGNNILVTTHKKTVARMME 209
           DV  D   +W  F     NGQ C     +  H+   A  ++
Sbjct: 269 DVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVD 309


>pdb|3IWJ|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
           Pisum Sativum (Psamadh2)
 pdb|3IWJ|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
           Pisum Sativum (Psamadh2)
          Length = 503

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 110 MGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLD 169
           + G+G    A +A +    +VA    +A G +   + +   LV+ +S  + GK  LVV +
Sbjct: 214 LTGLGPEAGAPLATHPDVDKVAFTGSSATGSKI--MTAAAQLVKPVSLELGGKSPLVVFE 271

Query: 170 DVWTDDYTKWEPFQRCSANGQ 190
           DV  D   +W  F     NGQ
Sbjct: 272 DVDLDKAAEWAIFGCFWTNGQ 292


>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
           Zea Mays (zmamadh1a)
 pdb|4I8P|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
           Zea Mays (zmamadh1a)
          Length = 520

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 101 PIKMISIV-GMGGIGKITLAQMAYNDK-----DFRVAKAIIAALGCETSNLGSLQSLVRC 154
           P  +++IV G+G      L+     DK      F   K I+A          S   +V+ 
Sbjct: 224 PSGVLNIVTGLGPDAGAPLSAHPDVDKVAFTGSFETGKKIMA----------SAAPMVKP 273

Query: 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQ-CGNNILVTTHKKTVARMME 209
           ++  + GK  +VV DDV  D   +W  F     NGQ C     +  H K   +  E
Sbjct: 274 VTLELGGKSPIVVFDDVDIDKAVEWTLFGCFWTNGQICSATSRLLIHTKIAKKFNE 329


>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
           With Magnesium
          Length = 167

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 369 FAQFLRKNQCLSIEVNSPNQSLTNISWEKLQHSTLVP 405
           FA +  K+    I+V +PNQ+   I WEK  H    P
Sbjct: 37  FALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYP 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,614,103
Number of Sequences: 62578
Number of extensions: 375019
Number of successful extensions: 817
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 6
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)