Query 038234
Match_columns 406
No_of_seqs 263 out of 2262
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-56 3.1E-61 466.3 27.0 371 24-405 105-532 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 8.2E-41 1.8E-45 313.7 10.1 239 80-324 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.3E-38 2.7E-43 347.4 21.2 314 30-378 133-506 (1153)
4 PRK04841 transcriptional regul 99.4 5.3E-11 1.2E-15 129.0 21.0 267 75-375 14-333 (903)
5 PRK00411 cdc6 cell division co 99.2 3.3E-09 7.1E-14 104.1 20.6 288 71-363 26-374 (394)
6 PRK00080 ruvB Holliday junctio 99.1 7.1E-10 1.5E-14 105.8 10.0 252 75-349 25-310 (328)
7 TIGR00635 ruvB Holliday juncti 99.0 1E-09 2.2E-14 103.9 10.3 251 75-348 4-288 (305)
8 COG2909 MalT ATP-dependent tra 99.0 2.3E-08 5E-13 101.7 19.6 268 74-376 18-340 (894)
9 TIGR02928 orc1/cdc6 family rep 99.0 6.3E-08 1.4E-12 94.0 20.2 273 73-350 13-351 (365)
10 COG2256 MGS1 ATPase related to 98.9 7E-10 1.5E-14 103.8 4.8 145 71-232 26-176 (436)
11 PF05729 NACHT: NACHT domain 98.9 4.7E-09 1E-13 89.6 8.6 127 103-231 1-162 (166)
12 TIGR03015 pepcterm_ATPase puta 98.8 1E-07 2.2E-12 88.4 13.7 129 102-232 43-205 (269)
13 PF01637 Arch_ATPase: Archaeal 98.8 1.1E-08 2.3E-13 92.5 6.4 44 77-126 1-44 (234)
14 PRK13342 recombination factor 98.6 2.3E-08 5E-13 98.4 4.8 143 75-231 12-163 (413)
15 COG3899 Predicted ATPase [Gene 98.6 3.9E-07 8.5E-12 96.9 13.8 279 77-372 2-384 (849)
16 KOG2028 ATPase related to the 98.6 6.5E-08 1.4E-12 89.4 5.4 127 99-230 159-292 (554)
17 PF13173 AAA_14: AAA domain 98.6 3.4E-08 7.4E-13 80.8 3.0 116 102-223 2-126 (128)
18 PF13191 AAA_16: AAA ATPase do 98.5 9.4E-08 2E-12 83.2 5.3 48 76-126 1-48 (185)
19 COG1474 CDC6 Cdc6-related prot 98.5 3.4E-05 7.4E-10 74.3 22.8 266 75-351 17-336 (366)
20 PRK13341 recombination factor 98.5 1.7E-07 3.7E-12 97.4 7.3 143 75-231 28-180 (725)
21 PTZ00112 origin recognition co 98.5 8.9E-06 1.9E-10 84.1 18.5 273 74-349 754-1086(1164)
22 PRK04195 replication factor C 98.5 1.6E-06 3.4E-11 87.2 12.2 147 75-232 14-173 (482)
23 PRK06893 DNA replication initi 98.5 2.6E-07 5.5E-12 83.5 5.9 123 102-232 39-174 (229)
24 PRK12323 DNA polymerase III su 98.4 7.8E-06 1.7E-10 82.7 15.9 153 75-232 16-196 (700)
25 PRK07003 DNA polymerase III su 98.4 3E-06 6.6E-11 86.7 12.8 153 75-232 16-191 (830)
26 cd00009 AAA The AAA+ (ATPases 98.4 8.5E-07 1.8E-11 73.5 7.5 43 78-126 1-43 (151)
27 PF13401 AAA_22: AAA domain; P 98.4 6.3E-07 1.4E-11 73.3 6.2 98 102-201 4-125 (131)
28 PTZ00202 tuzin; Provisional 98.4 3.6E-06 7.9E-11 80.8 11.4 154 71-230 258-432 (550)
29 PLN03025 replication factor C 98.4 8.9E-07 1.9E-11 84.2 7.3 150 75-232 13-171 (319)
30 PRK14961 DNA polymerase III su 98.3 3.4E-06 7.3E-11 81.6 11.0 153 75-232 16-191 (363)
31 PRK12402 replication factor C 98.3 1.3E-06 2.9E-11 83.7 8.2 152 75-232 15-197 (337)
32 PRK14960 DNA polymerase III su 98.3 3.7E-06 8.1E-11 85.1 11.5 153 75-232 15-190 (702)
33 TIGR03420 DnaA_homol_Hda DnaA 98.3 2.7E-06 5.9E-11 76.7 9.1 135 80-231 22-171 (226)
34 TIGR01242 26Sp45 26S proteasom 98.3 4.5E-07 9.7E-12 87.9 4.0 156 75-231 122-305 (364)
35 PRK06645 DNA polymerase III su 98.3 5.9E-06 1.3E-10 82.6 10.9 153 75-232 21-200 (507)
36 PRK08691 DNA polymerase III su 98.3 7.5E-06 1.6E-10 83.6 11.4 153 75-232 16-191 (709)
37 PRK00440 rfc replication facto 98.2 1.7E-06 3.8E-11 82.2 6.5 150 75-232 17-174 (319)
38 PRK09087 hypothetical protein; 98.2 4E-06 8.7E-11 75.4 8.4 113 102-232 44-166 (226)
39 PRK14949 DNA polymerase III su 98.2 1E-05 2.2E-10 84.5 12.1 153 75-232 16-191 (944)
40 PRK14963 DNA polymerase III su 98.2 1.3E-06 2.9E-11 87.5 5.5 153 75-232 14-188 (504)
41 PRK14956 DNA polymerase III su 98.2 2.4E-06 5.2E-11 84.0 6.8 153 75-232 18-193 (484)
42 PRK14957 DNA polymerase III su 98.2 2E-06 4.4E-11 86.4 6.6 153 75-232 16-191 (546)
43 TIGR02903 spore_lon_C ATP-depe 98.2 1.1E-05 2.3E-10 83.2 11.6 152 75-232 154-366 (615)
44 PRK07994 DNA polymerase III su 98.2 5.8E-06 1.3E-10 84.6 9.2 153 75-232 16-191 (647)
45 PRK05564 DNA polymerase III su 98.2 2.7E-06 5.8E-11 80.7 5.8 151 75-231 4-164 (313)
46 PRK14962 DNA polymerase III su 98.2 2.1E-06 4.5E-11 85.4 5.1 152 75-232 14-189 (472)
47 PRK14951 DNA polymerase III su 98.1 5.7E-06 1.2E-10 84.4 7.9 153 75-232 16-196 (618)
48 TIGR03345 VI_ClpV1 type VI sec 98.1 4.8E-06 1E-10 88.7 7.4 148 75-230 187-361 (852)
49 PRK14955 DNA polymerase III su 98.1 1E-05 2.2E-10 79.3 8.7 153 75-232 16-199 (397)
50 PRK14964 DNA polymerase III su 98.1 3E-05 6.4E-10 77.1 11.8 153 75-232 13-188 (491)
51 TIGR02639 ClpA ATP-dependent C 98.1 3.7E-06 7.9E-11 88.7 5.8 149 75-232 182-358 (731)
52 PRK08084 DNA replication initi 98.1 5.3E-06 1.1E-10 75.3 5.7 123 102-232 45-180 (235)
53 PHA02544 44 clamp loader, smal 98.1 1.1E-05 2.5E-10 76.6 8.3 143 75-230 21-171 (316)
54 PF05496 RuvB_N: Holliday junc 98.1 5.3E-06 1.1E-10 73.0 5.3 148 75-232 24-192 (233)
55 PRK05896 DNA polymerase III su 98.1 1.4E-05 3.1E-10 80.6 9.0 153 75-232 16-191 (605)
56 KOG0989 Replication factor C, 98.1 2.1E-05 4.5E-10 71.7 8.9 151 75-232 36-201 (346)
57 PRK03992 proteasome-activating 98.1 2.6E-06 5.6E-11 83.1 3.3 156 75-231 131-314 (389)
58 CHL00095 clpC Clp protease ATP 98.0 9.6E-06 2.1E-10 86.6 7.6 147 75-230 179-352 (821)
59 PRK14958 DNA polymerase III su 98.0 7E-06 1.5E-10 82.5 6.0 153 75-232 16-191 (509)
60 PF00308 Bac_DnaA: Bacterial d 98.0 2.4E-05 5.2E-10 70.1 8.6 144 76-232 10-179 (219)
61 PRK08727 hypothetical protein; 98.0 2.2E-05 4.8E-10 71.1 8.5 120 103-232 42-175 (233)
62 TIGR02397 dnaX_nterm DNA polym 98.0 4.2E-05 9.1E-10 73.9 11.0 153 75-232 14-189 (355)
63 PF05673 DUF815: Protein of un 98.0 7.1E-06 1.5E-10 73.2 4.7 128 71-206 23-155 (249)
64 PRK07764 DNA polymerase III su 98.0 3.1E-05 6.7E-10 81.8 10.2 153 75-232 15-192 (824)
65 PRK05642 DNA replication initi 98.0 6E-05 1.3E-09 68.3 10.5 120 102-232 45-179 (234)
66 PRK06620 hypothetical protein; 98.0 2.7E-05 5.9E-10 69.4 8.1 108 103-232 45-160 (214)
67 PF00004 AAA: ATPase family as 98.0 1.4E-06 3.1E-11 71.1 -0.2 68 105-173 1-69 (132)
68 PRK14969 DNA polymerase III su 98.0 1.1E-05 2.3E-10 81.7 5.9 153 75-232 16-191 (527)
69 PRK14954 DNA polymerase III su 97.9 4.6E-05 9.9E-10 78.1 10.2 153 75-232 16-199 (620)
70 PRK07940 DNA polymerase III su 97.9 4E-05 8.8E-10 74.5 9.4 155 76-230 6-187 (394)
71 PRK14970 DNA polymerase III su 97.9 9.6E-06 2.1E-10 78.8 5.0 153 75-232 17-180 (367)
72 PRK09111 DNA polymerase III su 97.9 3.5E-05 7.7E-10 78.7 9.2 153 75-232 24-204 (598)
73 PRK09112 DNA polymerase III su 97.9 6.3E-05 1.4E-09 72.1 10.4 152 74-231 22-212 (351)
74 PRK07471 DNA polymerase III su 97.9 9.4E-05 2E-09 71.3 11.3 152 75-232 19-213 (365)
75 PRK14952 DNA polymerase III su 97.9 1.7E-05 3.7E-10 80.6 6.3 153 75-232 13-190 (584)
76 PRK11034 clpA ATP-dependent Cl 97.9 2.8E-05 6.1E-10 81.5 8.0 150 75-232 186-362 (758)
77 PRK14959 DNA polymerase III su 97.9 4.8E-05 1E-09 77.3 9.2 152 75-232 16-191 (624)
78 PRK08903 DnaA regulatory inact 97.9 5.9E-05 1.3E-09 68.1 8.9 117 102-230 42-168 (227)
79 PRK14950 DNA polymerase III su 97.9 5.3E-05 1.1E-09 77.9 9.6 153 75-232 16-192 (585)
80 TIGR02881 spore_V_K stage V sp 97.9 9.4E-05 2E-09 68.3 9.9 149 76-232 7-191 (261)
81 TIGR00678 holB DNA polymerase 97.8 2.1E-05 4.5E-10 68.8 4.7 130 102-231 14-167 (188)
82 PRK10865 protein disaggregatio 97.8 4E-05 8.8E-10 82.0 7.1 46 75-126 178-223 (857)
83 PRK07133 DNA polymerase III su 97.8 4.5E-05 9.8E-10 78.7 7.1 153 75-232 18-190 (725)
84 PRK14087 dnaA chromosomal repl 97.8 9.9E-05 2.2E-09 73.3 9.2 123 102-232 141-288 (450)
85 TIGR03346 chaperone_ClpB ATP-d 97.8 2.8E-05 6.1E-10 83.4 5.6 151 75-231 173-348 (852)
86 CHL00181 cbbX CbbX; Provisiona 97.8 0.00025 5.4E-09 66.2 11.2 123 102-232 59-209 (287)
87 PRK06647 DNA polymerase III su 97.8 0.00027 5.8E-09 72.0 11.9 153 75-232 16-191 (563)
88 PRK14965 DNA polymerase III su 97.7 4.1E-05 8.9E-10 78.4 5.9 152 75-231 16-190 (576)
89 PRK14953 DNA polymerase III su 97.7 0.00028 6.1E-09 70.6 11.7 152 75-232 16-191 (486)
90 TIGR00362 DnaA chromosomal rep 97.7 0.00022 4.8E-09 70.2 10.5 121 102-232 136-281 (405)
91 PRK06305 DNA polymerase III su 97.7 3.4E-05 7.3E-10 76.6 4.5 153 75-232 17-193 (451)
92 PRK14971 DNA polymerase III su 97.7 0.0002 4.4E-09 73.7 10.1 153 75-232 17-193 (614)
93 PRK14948 DNA polymerase III su 97.7 0.00019 4.2E-09 73.8 9.7 153 75-232 16-193 (620)
94 PRK12422 chromosomal replicati 97.7 0.00036 7.8E-09 69.1 11.2 121 102-232 141-284 (445)
95 COG3903 Predicted ATPase [Gene 97.7 1.4E-05 3E-10 75.8 1.2 253 101-373 13-313 (414)
96 TIGR02880 cbbX_cfxQ probable R 97.7 0.00015 3.2E-09 67.7 7.9 122 103-232 59-208 (284)
97 COG2607 Predicted ATPase (AAA+ 97.7 0.00017 3.8E-09 63.6 7.7 123 71-201 56-182 (287)
98 PRK08451 DNA polymerase III su 97.7 0.00052 1.1E-08 69.0 12.1 153 75-232 14-189 (535)
99 KOG0991 Replication factor C, 97.6 0.00024 5.1E-09 62.4 8.1 94 75-176 27-127 (333)
100 COG0593 DnaA ATPase involved i 97.6 0.00073 1.6E-08 65.3 12.1 121 101-232 112-257 (408)
101 PF05621 TniB: Bacterial TniB 97.6 0.0002 4.3E-09 66.1 7.8 100 71-173 30-156 (302)
102 KOG0741 AAA+-type ATPase [Post 97.6 0.00015 3.2E-09 70.7 7.2 132 99-232 535-686 (744)
103 PRK08116 hypothetical protein; 97.6 9.6E-05 2.1E-09 68.3 5.8 93 103-202 115-221 (268)
104 COG2255 RuvB Holliday junction 97.6 0.00063 1.4E-08 61.6 10.5 148 75-232 26-194 (332)
105 PRK05563 DNA polymerase III su 97.6 0.00028 6.1E-09 72.0 9.4 153 75-232 16-191 (559)
106 PHA00729 NTP-binding motif con 97.6 0.00032 6.9E-09 62.4 8.3 71 101-171 16-91 (226)
107 PTZ00454 26S protease regulato 97.6 0.00012 2.6E-09 71.3 6.2 150 76-230 146-327 (398)
108 PRK14088 dnaA chromosomal repl 97.6 0.00047 1E-08 68.4 10.2 122 102-232 130-276 (440)
109 PRK14086 dnaA chromosomal repl 97.5 0.0006 1.3E-08 69.2 10.4 121 102-232 314-459 (617)
110 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00013 2.8E-09 72.3 5.4 96 76-172 191-292 (802)
111 TIGR02639 ClpA ATP-dependent C 97.5 0.00051 1.1E-08 72.7 10.3 113 75-188 454-579 (731)
112 TIGR00602 rad24 checkpoint pro 97.5 0.0005 1.1E-08 70.5 9.7 55 75-130 84-138 (637)
113 TIGR03689 pup_AAA proteasome A 97.5 0.00027 5.8E-09 70.7 7.4 158 75-232 182-378 (512)
114 PRK00149 dnaA chromosomal repl 97.5 0.00066 1.4E-08 67.8 10.3 121 102-232 148-293 (450)
115 CHL00176 ftsH cell division pr 97.4 0.00017 3.8E-09 74.3 5.5 157 75-232 183-366 (638)
116 COG0542 clpA ATP-binding subun 97.4 0.00027 5.8E-09 73.2 6.6 126 75-201 491-643 (786)
117 PRK07399 DNA polymerase III su 97.4 0.0013 2.9E-08 62.1 10.6 151 75-232 4-195 (314)
118 TIGR01241 FtsH_fam ATP-depende 97.4 0.00021 4.5E-09 72.2 5.5 153 75-232 55-238 (495)
119 PRK08181 transposase; Validate 97.4 0.00027 5.9E-09 65.1 5.6 94 103-202 107-209 (269)
120 PTZ00361 26 proteosome regulat 97.4 0.00015 3.3E-09 71.3 4.2 155 76-231 184-366 (438)
121 PRK07952 DNA replication prote 97.4 0.0011 2.3E-08 60.3 9.3 92 102-201 99-204 (244)
122 PRK08058 DNA polymerase III su 97.4 0.00089 1.9E-08 63.9 9.3 150 77-231 7-181 (329)
123 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00016 3.4E-09 68.7 4.0 51 76-126 52-102 (361)
124 PRK10865 protein disaggregatio 97.4 0.00085 1.8E-08 72.0 10.0 126 75-201 568-720 (857)
125 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00039 8.5E-09 74.3 7.2 124 75-201 566-718 (852)
126 PRK05707 DNA polymerase III su 97.3 0.00094 2E-08 63.5 8.8 132 100-231 20-177 (328)
127 COG1373 Predicted ATPase (AAA+ 97.3 0.0004 8.6E-09 68.0 6.4 118 104-227 39-162 (398)
128 smart00382 AAA ATPases associa 97.3 0.0008 1.7E-08 54.8 7.3 25 103-127 3-27 (148)
129 PRK08939 primosomal protein Dn 97.3 0.00067 1.4E-08 63.9 7.5 111 79-201 135-260 (306)
130 COG2812 DnaX DNA polymerase II 97.3 0.00031 6.7E-09 69.9 5.4 153 75-232 16-191 (515)
131 KOG2227 Pre-initiation complex 97.3 0.00097 2.1E-08 64.4 8.4 157 73-232 148-338 (529)
132 PRK06526 transposase; Provisio 97.3 0.00025 5.4E-09 64.9 4.3 24 102-125 98-121 (254)
133 PRK12377 putative replication 97.3 0.00023 4.9E-09 64.8 3.9 25 102-126 101-125 (248)
134 PF01695 IstB_IS21: IstB-like 97.3 0.00012 2.6E-09 63.3 1.9 94 102-202 47-150 (178)
135 COG0542 clpA ATP-binding subun 97.3 0.0011 2.5E-08 68.7 9.0 149 75-232 170-346 (786)
136 PF13177 DNA_pol3_delta2: DNA 97.3 0.0011 2.3E-08 56.5 7.4 135 79-219 1-161 (162)
137 PRK09183 transposase/IS protei 97.2 0.00081 1.8E-08 61.8 7.1 24 102-125 102-125 (259)
138 PRK10536 hypothetical protein; 97.2 0.0021 4.6E-08 58.2 9.4 41 76-124 56-96 (262)
139 PRK11331 5-methylcytosine-spec 97.2 0.00078 1.7E-08 65.8 7.0 44 75-126 175-218 (459)
140 KOG2543 Origin recognition com 97.2 0.0017 3.6E-08 61.3 8.7 96 74-172 5-125 (438)
141 TIGR03346 chaperone_ClpB ATP-d 97.2 0.00076 1.7E-08 72.5 7.4 124 75-201 565-717 (852)
142 PF13207 AAA_17: AAA domain; P 97.2 0.00031 6.7E-09 56.5 3.0 23 104-126 1-23 (121)
143 PRK10787 DNA-binding ATP-depen 97.1 0.00051 1.1E-08 72.7 5.2 156 75-232 322-506 (784)
144 TIGR00763 lon ATP-dependent pr 97.1 0.0014 3.1E-08 69.7 8.3 155 75-231 320-504 (775)
145 PRK06696 uridine kinase; Valid 97.1 0.00061 1.3E-08 61.3 4.7 44 79-125 2-45 (223)
146 cd01128 rho_factor Transcripti 97.1 0.00084 1.8E-08 61.1 5.5 27 101-127 15-41 (249)
147 PRK11034 clpA ATP-dependent Cl 97.1 0.00096 2.1E-08 70.2 6.6 112 75-187 458-582 (758)
148 PRK08118 topology modulation p 97.0 0.00082 1.8E-08 57.5 4.6 64 104-172 3-68 (167)
149 COG2884 FtsE Predicted ATPase 97.0 0.0032 6.9E-08 53.9 7.8 57 153-209 146-204 (223)
150 COG1875 NYN ribonuclease and A 97.0 0.0021 4.4E-08 60.4 7.2 38 79-122 228-265 (436)
151 PF14516 AAA_35: AAA-like doma 97.0 0.041 8.9E-07 52.6 16.3 173 72-251 8-246 (331)
152 PRK06871 DNA polymerase III su 97.0 0.0042 9.2E-08 58.8 9.1 143 84-231 11-178 (325)
153 PRK09376 rho transcription ter 97.0 0.001 2.2E-08 63.8 4.9 25 102-126 169-193 (416)
154 PF04665 Pox_A32: Poxvirus A32 96.9 0.0017 3.7E-08 58.4 5.6 25 102-126 13-37 (241)
155 CHL00095 clpC Clp protease ATP 96.9 0.0013 2.8E-08 70.6 5.6 125 75-201 509-661 (821)
156 PF14532 Sigma54_activ_2: Sigm 96.9 0.00069 1.5E-08 56.0 2.7 108 78-202 1-110 (138)
157 PF02562 PhoH: PhoH-like prote 96.8 0.0021 4.5E-08 56.5 5.5 37 79-123 4-40 (205)
158 PLN00020 ribulose bisphosphate 96.8 0.00087 1.9E-08 63.5 3.2 73 99-172 145-222 (413)
159 COG1484 DnaC DNA replication p 96.8 0.0015 3.3E-08 59.8 4.7 25 102-126 105-129 (254)
160 PRK06921 hypothetical protein; 96.8 0.0032 6.9E-08 58.1 6.8 25 102-126 117-141 (266)
161 COG1222 RPT1 ATP-dependent 26S 96.8 0.0013 2.8E-08 61.6 3.9 94 77-172 153-254 (406)
162 TIGR00767 rho transcription te 96.8 0.0025 5.5E-08 61.4 6.0 24 102-125 168-191 (415)
163 COG1223 Predicted ATPase (AAA+ 96.7 0.007 1.5E-07 54.3 7.9 152 75-232 121-297 (368)
164 CHL00195 ycf46 Ycf46; Provisio 96.7 0.0021 4.6E-08 64.3 5.3 131 100-231 257-404 (489)
165 TIGR01243 CDC48 AAA family ATP 96.7 0.0027 5.8E-08 67.4 6.4 156 75-231 453-634 (733)
166 PRK15455 PrkA family serine pr 96.7 0.0011 2.3E-08 66.5 3.0 50 76-125 77-126 (644)
167 PRK06964 DNA polymerase III su 96.7 0.011 2.5E-07 56.3 9.8 71 161-231 131-203 (342)
168 PRK06835 DNA replication prote 96.7 0.0015 3.2E-08 62.1 3.8 24 103-126 184-207 (329)
169 TIGR01243 CDC48 AAA family ATP 96.7 0.0012 2.5E-08 70.1 3.3 155 75-230 178-357 (733)
170 PHA02244 ATPase-like protein 96.7 0.0054 1.2E-07 58.5 7.3 23 104-126 121-143 (383)
171 COG0572 Udk Uridine kinase [Nu 96.7 0.0017 3.6E-08 57.2 3.6 64 100-163 6-85 (218)
172 PRK07667 uridine kinase; Provi 96.7 0.0025 5.4E-08 55.9 4.7 38 84-125 3-40 (193)
173 PRK06090 DNA polymerase III su 96.6 0.022 4.7E-07 53.9 10.8 143 83-231 11-179 (319)
174 PRK11889 flhF flagellar biosyn 96.6 0.0073 1.6E-07 58.1 7.6 24 101-124 240-263 (436)
175 PRK07261 topology modulation p 96.6 0.0015 3.1E-08 56.2 2.6 64 104-171 2-66 (171)
176 COG1136 SalX ABC-type antimicr 96.5 0.0099 2.1E-07 52.9 7.7 57 153-209 151-210 (226)
177 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0056 1.2E-07 58.9 6.4 101 99-204 59-169 (362)
178 PF00448 SRP54: SRP54-type pro 96.5 0.0065 1.4E-07 53.4 6.3 70 102-171 1-92 (196)
179 TIGR02640 gas_vesic_GvpN gas v 96.5 0.0067 1.5E-07 55.9 6.6 22 104-125 23-44 (262)
180 PRK08699 DNA polymerase III su 96.5 0.0082 1.8E-07 57.1 7.3 131 100-231 19-184 (325)
181 PRK07993 DNA polymerase III su 96.5 0.0053 1.2E-07 58.6 6.0 144 83-231 10-179 (334)
182 PRK05541 adenylylsulfate kinas 96.5 0.0028 6.1E-08 54.6 3.8 27 100-126 5-31 (176)
183 COG0470 HolB ATPase involved i 96.5 0.0078 1.7E-07 57.2 7.2 141 77-221 3-170 (325)
184 PRK13695 putative NTPase; Prov 96.5 0.0015 3.2E-08 56.3 2.0 22 104-125 2-23 (174)
185 PF13238 AAA_18: AAA domain; P 96.5 0.0021 4.5E-08 51.9 2.8 22 105-126 1-22 (129)
186 KOG1969 DNA replication checkp 96.4 0.0038 8.1E-08 63.5 4.7 29 99-127 323-351 (877)
187 PRK08233 hypothetical protein; 96.4 0.0026 5.6E-08 55.0 3.2 25 102-126 3-27 (182)
188 COG4618 ArpD ABC-type protease 96.4 0.0042 9.1E-08 60.8 4.8 24 102-125 362-385 (580)
189 PRK12608 transcription termina 96.4 0.0061 1.3E-07 58.3 5.9 84 83-171 119-229 (380)
190 PF00485 PRK: Phosphoribulokin 96.4 0.0026 5.6E-08 55.9 3.0 22 104-125 1-22 (194)
191 PRK04296 thymidine kinase; Pro 96.4 0.0031 6.7E-08 55.2 3.4 98 103-203 3-117 (190)
192 COG0563 Adk Adenylate kinase a 96.3 0.0094 2E-07 51.4 6.3 24 104-127 2-25 (178)
193 PF13604 AAA_30: AAA domain; P 96.3 0.0041 8.9E-08 54.7 4.0 91 102-200 18-129 (196)
194 cd03228 ABCC_MRP_Like The MRP 96.3 0.015 3.2E-07 49.9 7.3 106 102-207 28-160 (171)
195 PRK08769 DNA polymerase III su 96.3 0.022 4.8E-07 53.8 9.1 143 83-231 12-184 (319)
196 PRK05480 uridine/cytidine kina 96.3 0.0033 7.1E-08 55.9 3.4 27 100-126 4-30 (209)
197 TIGR00235 udk uridine kinase. 96.3 0.0033 7.1E-08 55.8 3.3 26 100-125 4-29 (207)
198 PF13671 AAA_33: AAA domain; P 96.3 0.0035 7.6E-08 51.8 3.2 23 104-126 1-23 (143)
199 COG1618 Predicted nucleotide k 96.3 0.0036 7.8E-08 52.1 3.1 26 102-127 5-30 (179)
200 KOG0730 AAA+-type ATPase [Post 96.3 0.01 2.2E-07 59.8 6.8 152 76-232 435-615 (693)
201 KOG2004 Mitochondrial ATP-depe 96.3 0.0031 6.7E-08 64.0 3.1 157 75-232 411-596 (906)
202 cd01131 PilT Pilus retraction 96.3 0.0041 8.8E-08 54.8 3.6 99 104-207 3-114 (198)
203 cd03247 ABCC_cytochrome_bd The 96.2 0.015 3.3E-07 50.2 7.1 105 102-206 28-161 (178)
204 PRK06547 hypothetical protein; 96.2 0.0063 1.4E-07 52.3 4.6 27 100-126 13-39 (172)
205 PF08433 KTI12: Chromatin asso 96.2 0.0042 9.1E-08 57.3 3.7 24 103-126 2-25 (270)
206 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.0085 1.8E-07 50.5 5.1 47 156-202 88-138 (159)
207 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.006 1.3E-07 54.4 4.4 107 102-208 29-160 (213)
208 KOG0744 AAA+-type ATPase [Post 96.2 0.0092 2E-07 55.2 5.6 69 102-172 177-260 (423)
209 PRK06762 hypothetical protein; 96.2 0.0037 8.1E-08 53.2 3.0 25 102-126 2-26 (166)
210 COG2274 SunT ABC-type bacterio 96.2 0.007 1.5E-07 63.3 5.5 29 100-128 497-525 (709)
211 COG1102 Cmk Cytidylate kinase 96.2 0.005 1.1E-07 51.2 3.5 38 104-141 2-45 (179)
212 KOG0726 26S proteasome regulat 96.2 0.022 4.7E-07 52.0 7.8 95 76-172 186-288 (440)
213 PTZ00301 uridine kinase; Provi 96.2 0.0039 8.4E-08 55.3 3.1 24 102-125 3-26 (210)
214 PRK13531 regulatory ATPase Rav 96.2 0.0056 1.2E-07 60.5 4.3 43 75-125 20-62 (498)
215 COG0396 sufC Cysteine desulfur 96.2 0.022 4.8E-07 50.3 7.5 26 102-127 30-55 (251)
216 PF01583 APS_kinase: Adenylyls 96.1 0.012 2.6E-07 49.4 5.6 26 102-127 2-27 (156)
217 cd02019 NK Nucleoside/nucleoti 96.1 0.0038 8.3E-08 44.7 2.2 22 104-125 1-22 (69)
218 COG0466 Lon ATP-dependent Lon 96.1 0.0042 9.1E-08 63.2 3.3 157 75-232 323-508 (782)
219 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.02 4.3E-07 51.8 7.0 23 102-124 30-52 (254)
220 PRK03839 putative kinase; Prov 96.1 0.0036 7.7E-08 54.2 2.2 25 104-128 2-26 (180)
221 TIGR03499 FlhF flagellar biosy 96.0 0.022 4.7E-07 53.2 7.5 24 101-124 193-216 (282)
222 cd03214 ABC_Iron-Siderophores_ 96.0 0.023 4.9E-07 49.2 7.2 105 102-206 25-162 (180)
223 TIGR01817 nifA Nif-specific re 96.0 0.012 2.6E-07 60.1 6.2 50 73-126 194-243 (534)
224 KOG2228 Origin recognition com 96.0 0.028 6.1E-07 52.4 7.8 156 75-232 24-219 (408)
225 KOG1514 Origin recognition com 96.0 0.027 5.9E-07 57.3 8.3 154 75-232 396-589 (767)
226 COG4088 Predicted nucleotide k 96.0 0.014 3E-07 50.6 5.4 26 103-128 2-27 (261)
227 PF07693 KAP_NTPase: KAP famil 96.0 0.046 9.9E-07 52.0 9.6 40 82-124 3-42 (325)
228 PRK04040 adenylate kinase; Pro 95.9 0.0063 1.4E-07 53.1 3.2 25 102-126 2-26 (188)
229 PF10443 RNA12: RNA12 protein; 95.9 0.086 1.9E-06 51.2 11.0 41 80-126 1-42 (431)
230 PTZ00088 adenylate kinase 1; P 95.9 0.012 2.6E-07 53.0 4.9 26 103-128 7-32 (229)
231 COG3267 ExeA Type II secretory 95.9 0.055 1.2E-06 48.6 8.9 133 100-232 49-213 (269)
232 KOG0651 26S proteasome regulat 95.9 0.0063 1.4E-07 55.9 3.0 71 100-172 164-235 (388)
233 PRK10867 signal recognition pa 95.9 0.029 6.4E-07 55.2 7.9 24 100-123 98-121 (433)
234 TIGR00150 HI0065_YjeE ATPase, 95.9 0.012 2.5E-07 48.1 4.2 41 82-126 6-46 (133)
235 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.019 4E-07 50.8 5.9 106 102-209 29-158 (204)
236 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0059 1.3E-07 53.0 2.7 24 102-125 3-26 (188)
237 PRK15429 formate hydrogenlyase 95.8 0.01 2.2E-07 62.6 4.9 48 75-126 376-423 (686)
238 PRK05342 clpX ATP-dependent pr 95.8 0.017 3.6E-07 56.7 6.0 53 75-127 71-133 (412)
239 KOG2170 ATPase of the AAA+ sup 95.8 0.019 4E-07 52.7 5.8 110 76-187 83-203 (344)
240 cd03223 ABCD_peroxisomal_ALDP 95.8 0.027 5.9E-07 48.0 6.6 103 102-206 27-152 (166)
241 PRK12723 flagellar biosynthesi 95.8 0.029 6.2E-07 54.5 7.4 71 101-173 173-265 (388)
242 PRK00131 aroK shikimate kinase 95.8 0.0068 1.5E-07 51.8 2.8 26 102-127 4-29 (175)
243 COG4608 AppF ABC-type oligopep 95.8 0.026 5.7E-07 51.2 6.6 109 102-210 39-178 (268)
244 KOG0734 AAA+-type ATPase conta 95.8 0.02 4.4E-07 56.4 6.1 90 76-173 305-407 (752)
245 KOG0058 Peptide exporter, ABC 95.8 0.012 2.5E-07 60.2 4.6 28 100-127 492-519 (716)
246 cd03216 ABC_Carb_Monos_I This 95.8 0.015 3.2E-07 49.5 4.7 104 102-206 26-146 (163)
247 cd00983 recA RecA is a bacter 95.8 0.022 4.7E-07 53.8 6.2 74 99-172 52-143 (325)
248 PF07728 AAA_5: AAA domain (dy 95.8 0.0076 1.6E-07 49.6 2.8 21 105-125 2-22 (139)
249 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.044 9.5E-07 48.5 7.8 25 101-125 33-57 (207)
250 PRK00889 adenylylsulfate kinas 95.7 0.0092 2E-07 51.3 3.4 25 101-125 3-27 (175)
251 PRK00625 shikimate kinase; Pro 95.7 0.0062 1.4E-07 52.3 2.2 24 104-127 2-25 (173)
252 PRK09270 nucleoside triphospha 95.7 0.014 3.1E-07 52.6 4.7 27 99-125 30-56 (229)
253 cd03246 ABCC_Protease_Secretio 95.7 0.023 4.9E-07 48.8 5.7 25 102-126 28-52 (173)
254 PRK14974 cell division protein 95.7 0.036 7.7E-07 52.8 7.5 24 101-124 139-162 (336)
255 cd02027 APSK Adenosine 5'-phos 95.7 0.014 3E-07 48.9 4.2 23 104-126 1-23 (149)
256 TIGR02012 tigrfam_recA protein 95.7 0.025 5.3E-07 53.4 6.3 74 99-172 52-143 (321)
257 PRK05439 pantothenate kinase; 95.7 0.014 3E-07 54.8 4.6 26 99-124 83-108 (311)
258 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.012 2.6E-07 55.6 4.2 51 75-125 61-111 (358)
259 TIGR00554 panK_bact pantothena 95.7 0.016 3.5E-07 53.9 5.0 24 99-122 59-82 (290)
260 PRK13657 cyclic beta-1,2-gluca 95.7 0.016 3.4E-07 60.1 5.4 26 101-126 360-385 (588)
261 PF03308 ArgK: ArgK protein; 95.7 0.019 4.1E-07 51.9 5.1 39 83-125 14-52 (266)
262 TIGR00382 clpX endopeptidase C 95.7 0.033 7.2E-07 54.4 7.3 53 75-127 77-141 (413)
263 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.034 7.3E-07 46.2 6.4 103 102-207 26-132 (144)
264 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0061 1.3E-07 52.8 2.0 24 104-127 1-24 (183)
265 TIGR02858 spore_III_AA stage I 95.6 0.043 9.3E-07 50.7 7.6 114 83-207 97-234 (270)
266 cd03251 ABCC_MsbA MsbA is an e 95.6 0.045 9.7E-07 49.5 7.6 24 102-125 28-51 (234)
267 COG1936 Predicted nucleotide k 95.6 0.0078 1.7E-07 50.7 2.4 20 104-123 2-21 (180)
268 TIGR02322 phosphon_PhnN phosph 95.6 0.0086 1.9E-07 51.7 2.8 24 103-126 2-25 (179)
269 PRK05703 flhF flagellar biosyn 95.6 0.048 1E-06 53.8 8.3 22 102-123 221-242 (424)
270 cd00227 CPT Chloramphenicol (C 95.6 0.0084 1.8E-07 51.6 2.6 25 102-126 2-26 (175)
271 cd02023 UMPK Uridine monophosp 95.6 0.0072 1.6E-07 53.2 2.2 21 104-124 1-21 (198)
272 TIGR02868 CydC thiol reductant 95.6 0.018 3.9E-07 58.9 5.4 27 100-126 359-385 (529)
273 cd03230 ABC_DR_subfamily_A Thi 95.6 0.041 9E-07 47.2 6.9 106 102-207 26-160 (173)
274 cd03115 SRP The signal recogni 95.5 0.024 5.1E-07 48.7 5.2 22 104-125 2-23 (173)
275 TIGR02857 CydD thiol reductant 95.5 0.027 5.8E-07 57.6 6.5 28 100-127 346-373 (529)
276 KOG0652 26S proteasome regulat 95.5 0.062 1.3E-06 48.3 7.7 95 76-172 172-274 (424)
277 PRK06217 hypothetical protein; 95.5 0.01 2.2E-07 51.6 2.8 24 104-127 3-26 (183)
278 PRK00771 signal recognition pa 95.5 0.037 8.1E-07 54.6 7.0 26 100-125 93-118 (437)
279 TIGR02974 phageshock_pspF psp 95.5 0.011 2.3E-07 56.5 3.1 46 77-126 1-46 (329)
280 cd02024 NRK1 Nicotinamide ribo 95.5 0.0083 1.8E-07 52.1 2.2 23 104-126 1-23 (187)
281 PRK12727 flagellar biosynthesi 95.5 0.039 8.5E-07 55.2 7.1 24 101-124 349-372 (559)
282 PRK14722 flhF flagellar biosyn 95.5 0.028 6.2E-07 54.1 5.9 24 101-124 136-159 (374)
283 TIGR00958 3a01208 Conjugate Tr 95.4 0.02 4.2E-07 60.7 5.2 28 100-127 505-532 (711)
284 KOG0924 mRNA splicing factor A 95.4 0.059 1.3E-06 54.6 8.1 111 83-202 360-510 (1042)
285 PRK09354 recA recombinase A; P 95.4 0.034 7.5E-07 53.0 6.3 74 99-172 57-148 (349)
286 KOG0729 26S proteasome regulat 95.4 0.022 4.8E-07 51.3 4.7 94 77-172 179-280 (435)
287 cd01133 F1-ATPase_beta F1 ATP 95.4 0.029 6.4E-07 51.6 5.6 26 102-127 69-94 (274)
288 cd02025 PanK Pantothenate kina 95.4 0.0085 1.8E-07 53.7 2.1 22 104-125 1-22 (220)
289 cd02021 GntK Gluconate kinase 95.4 0.0095 2.1E-07 49.8 2.3 24 104-127 1-24 (150)
290 COG1428 Deoxynucleoside kinase 95.4 0.011 2.3E-07 51.6 2.6 27 102-128 4-30 (216)
291 cd03244 ABCC_MRP_domain2 Domai 95.4 0.088 1.9E-06 47.0 8.7 24 102-125 30-53 (221)
292 PRK09361 radB DNA repair and r 95.4 0.04 8.7E-07 49.4 6.5 25 100-124 21-45 (225)
293 PRK10733 hflB ATP-dependent me 95.4 0.014 3.1E-07 60.8 4.0 125 103-232 186-335 (644)
294 KOG0727 26S proteasome regulat 95.4 0.029 6.2E-07 50.2 5.2 53 76-128 156-215 (408)
295 PRK00300 gmk guanylate kinase; 95.4 0.012 2.6E-07 52.0 3.0 26 101-126 4-29 (205)
296 PF00910 RNA_helicase: RNA hel 95.4 0.0091 2E-07 46.9 2.0 21 105-125 1-21 (107)
297 PRK14738 gmk guanylate kinase; 95.4 0.015 3.1E-07 51.6 3.5 27 99-125 10-36 (206)
298 TIGR03375 type_I_sec_LssB type 95.4 0.018 4E-07 60.9 4.9 26 101-126 490-515 (694)
299 TIGR03263 guanyl_kin guanylate 95.4 0.013 2.8E-07 50.6 3.1 24 103-126 2-25 (180)
300 TIGR00959 ffh signal recogniti 95.4 0.07 1.5E-06 52.6 8.4 25 100-124 97-121 (428)
301 PRK00279 adk adenylate kinase; 95.4 0.043 9.4E-07 48.9 6.5 25 104-128 2-26 (215)
302 cd02020 CMPK Cytidine monophos 95.3 0.01 2.2E-07 49.1 2.2 23 104-126 1-23 (147)
303 TIGR03522 GldA_ABC_ATP gliding 95.3 0.057 1.2E-06 50.9 7.4 25 101-125 27-51 (301)
304 cd02028 UMPK_like Uridine mono 95.3 0.011 2.3E-07 51.2 2.3 22 104-125 1-22 (179)
305 PRK14737 gmk guanylate kinase; 95.3 0.018 4E-07 50.1 3.6 26 101-126 3-28 (186)
306 PRK03846 adenylylsulfate kinas 95.3 0.016 3.5E-07 51.0 3.4 26 100-125 22-47 (198)
307 PRK12339 2-phosphoglycerate ki 95.3 0.015 3.2E-07 51.1 3.0 25 102-126 3-27 (197)
308 TIGR03796 NHPM_micro_ABC1 NHPM 95.2 0.021 4.6E-07 60.5 4.8 27 100-126 503-529 (710)
309 PF07726 AAA_3: ATPase family 95.2 0.0096 2.1E-07 47.9 1.6 23 105-127 2-24 (131)
310 PRK04132 replication factor C 95.2 0.016 3.4E-07 61.5 3.6 121 110-232 574-702 (846)
311 TIGR01193 bacteriocin_ABC ABC- 95.2 0.022 4.8E-07 60.4 4.8 28 100-127 498-525 (708)
312 PRK13947 shikimate kinase; Pro 95.2 0.013 2.8E-07 50.1 2.5 24 104-127 3-26 (171)
313 PF00406 ADK: Adenylate kinase 95.2 0.038 8.1E-07 46.2 5.3 22 107-128 1-22 (151)
314 COG0464 SpoVK ATPases of the A 95.2 0.011 2.5E-07 59.7 2.5 132 100-232 274-423 (494)
315 PRK11174 cysteine/glutathione 95.2 0.027 5.8E-07 58.4 5.3 27 100-126 374-400 (588)
316 KOG0735 AAA+-type ATPase [Post 95.2 0.0069 1.5E-07 61.5 0.9 70 102-172 431-504 (952)
317 PRK11176 lipid transporter ATP 95.2 0.02 4.2E-07 59.3 4.2 27 101-127 368-394 (582)
318 PRK12726 flagellar biosynthesi 95.2 0.045 9.7E-07 52.6 6.2 25 100-124 204-228 (407)
319 PF08477 Miro: Miro-like prote 95.2 0.017 3.6E-07 46.0 2.8 23 105-127 2-24 (119)
320 PRK13949 shikimate kinase; Pro 95.1 0.014 3E-07 50.0 2.4 24 104-127 3-26 (169)
321 PRK10751 molybdopterin-guanine 95.1 0.021 4.6E-07 48.9 3.5 25 101-125 5-29 (173)
322 COG1703 ArgK Putative periplas 95.1 0.024 5.2E-07 52.1 4.0 38 84-125 37-74 (323)
323 PRK12724 flagellar biosynthesi 95.1 0.047 1E-06 53.2 6.2 23 102-124 223-245 (432)
324 PF00158 Sigma54_activat: Sigm 95.1 0.019 4.1E-07 49.1 3.3 47 77-127 1-47 (168)
325 TIGR01192 chvA glucan exporter 95.1 0.03 6.5E-07 57.9 5.2 27 100-126 359-385 (585)
326 PF03205 MobB: Molybdopterin g 95.1 0.019 4.2E-07 47.4 3.0 23 103-125 1-23 (140)
327 PRK10463 hydrogenase nickel in 95.1 0.11 2.3E-06 48.3 8.1 27 99-125 101-127 (290)
328 PRK11160 cysteine/glutathione 95.0 0.028 6.1E-07 58.0 4.8 28 100-127 364-391 (574)
329 PRK05022 anaerobic nitric oxid 95.0 0.022 4.8E-07 57.8 3.9 49 74-126 186-234 (509)
330 cd00071 GMPK Guanosine monopho 95.0 0.016 3.5E-07 47.7 2.4 22 105-126 2-23 (137)
331 PRK14530 adenylate kinase; Pro 95.0 0.014 3E-07 52.1 2.1 24 104-127 5-28 (215)
332 PF03193 DUF258: Protein of un 95.0 0.035 7.7E-07 46.8 4.4 36 82-126 24-59 (161)
333 COG2019 AdkA Archaeal adenylat 95.0 0.022 4.8E-07 47.7 3.1 25 102-126 4-28 (189)
334 cd00464 SK Shikimate kinase (S 95.0 0.017 3.7E-07 48.3 2.5 22 105-126 2-23 (154)
335 PRK10078 ribose 1,5-bisphospho 95.0 0.02 4.4E-07 49.8 3.1 24 103-126 3-26 (186)
336 PRK14527 adenylate kinase; Pro 95.0 0.019 4.1E-07 50.2 2.8 27 101-127 5-31 (191)
337 TIGR03797 NHPM_micro_ABC2 NHPM 95.0 0.034 7.3E-07 58.8 5.2 28 100-127 477-504 (686)
338 PF03266 NTPase_1: NTPase; In 95.0 0.018 3.9E-07 49.2 2.6 22 105-126 2-23 (168)
339 KOG0733 Nuclear AAA ATPase (VC 94.9 0.041 8.9E-07 55.2 5.3 125 102-232 545-692 (802)
340 COG1066 Sms Predicted ATP-depe 94.9 0.089 1.9E-06 50.5 7.4 70 101-173 92-179 (456)
341 PRK13975 thymidylate kinase; P 94.9 0.018 3.9E-07 50.4 2.6 25 103-127 3-27 (196)
342 TIGR01313 therm_gnt_kin carboh 94.9 0.015 3.2E-07 49.3 2.0 22 105-126 1-22 (163)
343 COG1124 DppF ABC-type dipeptid 94.9 0.021 4.5E-07 50.9 2.9 25 101-125 32-56 (252)
344 COG1120 FepC ABC-type cobalami 94.9 0.15 3.2E-06 46.5 8.3 27 101-127 27-53 (258)
345 TIGR02238 recomb_DMC1 meiotic 94.9 0.097 2.1E-06 49.5 7.5 25 99-123 93-117 (313)
346 PLN02200 adenylate kinase fami 94.8 0.022 4.7E-07 51.6 2.9 27 101-127 42-68 (234)
347 COG0410 LivF ABC-type branched 94.8 0.096 2.1E-06 46.4 6.7 27 101-127 28-54 (237)
348 PRK08972 fliI flagellum-specif 94.8 0.049 1.1E-06 53.4 5.5 25 102-126 162-186 (444)
349 PRK14723 flhF flagellar biosyn 94.8 0.1 2.2E-06 54.7 8.1 23 102-124 185-207 (767)
350 CHL00206 ycf2 Ycf2; Provisiona 94.8 0.089 1.9E-06 59.7 7.9 29 100-128 1628-1656(2281)
351 TIGR02902 spore_lonB ATP-depen 94.8 0.034 7.4E-07 56.6 4.6 43 76-124 66-108 (531)
352 cd00820 PEPCK_HprK Phosphoenol 94.8 0.029 6.3E-07 43.8 3.2 22 102-123 15-36 (107)
353 COG0194 Gmk Guanylate kinase [ 94.8 0.026 5.6E-07 48.3 3.1 25 102-126 4-28 (191)
354 KOG1532 GTPase XAB1, interacts 94.8 0.077 1.7E-06 48.1 6.1 28 99-126 16-43 (366)
355 PF12775 AAA_7: P-loop contain 94.7 0.028 6.1E-07 52.1 3.5 36 84-126 22-57 (272)
356 COG0703 AroK Shikimate kinase 94.7 0.046 1E-06 46.4 4.5 25 103-127 3-27 (172)
357 KOG3347 Predicted nucleotide k 94.7 0.021 4.5E-07 46.9 2.3 25 102-126 7-31 (176)
358 PRK13948 shikimate kinase; Pro 94.7 0.023 5E-07 49.2 2.7 27 100-126 8-34 (182)
359 TIGR00390 hslU ATP-dependent p 94.7 0.035 7.6E-07 54.0 4.2 53 75-127 12-72 (441)
360 PF13521 AAA_28: AAA domain; P 94.7 0.021 4.6E-07 48.5 2.5 21 105-125 2-22 (163)
361 PRK06067 flagellar accessory p 94.7 0.06 1.3E-06 48.6 5.6 25 99-123 22-46 (234)
362 cd04155 Arl3 Arl3 subfamily. 94.7 0.028 6.2E-07 47.8 3.2 24 102-125 14-37 (173)
363 TIGR02203 MsbA_lipidA lipid A 94.7 0.03 6.6E-07 57.7 4.0 26 101-126 357-382 (571)
364 PRK05057 aroK shikimate kinase 94.7 0.022 4.8E-07 48.9 2.5 25 102-126 4-28 (172)
365 PRK04182 cytidylate kinase; Pr 94.7 0.023 5E-07 48.8 2.6 25 104-128 2-26 (180)
366 PRK13236 nitrogenase reductase 94.7 0.028 6.2E-07 52.8 3.4 24 99-122 3-26 (296)
367 TIGR01287 nifH nitrogenase iro 94.7 0.022 4.7E-07 53.0 2.6 21 103-123 1-21 (275)
368 cd01878 HflX HflX subfamily. 94.6 0.072 1.6E-06 46.9 5.8 25 102-126 41-65 (204)
369 PRK09435 membrane ATPase/prote 94.6 0.051 1.1E-06 51.6 5.0 37 84-124 42-78 (332)
370 COG4181 Predicted ABC-type tra 94.6 0.2 4.2E-06 42.5 7.7 58 153-210 155-215 (228)
371 TIGR00017 cmk cytidylate kinas 94.6 0.068 1.5E-06 47.7 5.5 25 103-127 3-27 (217)
372 PRK05201 hslU ATP-dependent pr 94.6 0.058 1.3E-06 52.5 5.3 54 75-128 15-76 (443)
373 KOG1051 Chaperone HSP104 and r 94.6 0.11 2.5E-06 55.1 7.8 109 76-187 563-685 (898)
374 PRK15453 phosphoribulokinase; 94.6 0.029 6.4E-07 51.6 3.1 25 100-124 3-27 (290)
375 PRK07132 DNA polymerase III su 94.6 0.06 1.3E-06 50.5 5.3 131 100-231 16-161 (299)
376 TIGR01846 type_I_sec_HlyB type 94.6 0.037 7.9E-07 58.6 4.3 27 101-127 482-508 (694)
377 TIGR02030 BchI-ChlI magnesium 94.6 0.044 9.6E-07 52.3 4.4 45 75-125 4-48 (337)
378 PRK13946 shikimate kinase; Pro 94.5 0.023 4.9E-07 49.4 2.3 26 102-127 10-35 (184)
379 cd01121 Sms Sms (bacterial rad 94.5 0.16 3.4E-06 49.3 8.2 26 100-125 80-105 (372)
380 COG0488 Uup ATPase components 94.5 0.14 3E-06 52.0 8.1 60 155-217 450-510 (530)
381 COG0714 MoxR-like ATPases [Gen 94.5 0.052 1.1E-06 51.9 4.9 45 75-127 24-68 (329)
382 TIGR02173 cyt_kin_arch cytidyl 94.5 0.027 5.9E-07 48.0 2.6 24 104-127 2-25 (171)
383 PRK05537 bifunctional sulfate 94.5 0.052 1.1E-06 55.6 5.0 49 74-126 368-416 (568)
384 TIGR00750 lao LAO/AO transport 94.5 0.05 1.1E-06 51.2 4.6 37 84-124 20-56 (300)
385 PRK13537 nodulation ABC transp 94.5 0.093 2E-06 49.6 6.4 25 102-126 33-57 (306)
386 cd02117 NifH_like This family 94.5 0.028 6E-07 50.1 2.7 21 103-123 1-21 (212)
387 PRK13230 nitrogenase reductase 94.4 0.029 6.2E-07 52.3 2.9 21 103-123 2-22 (279)
388 PRK14532 adenylate kinase; Pro 94.4 0.026 5.6E-07 49.1 2.4 24 105-128 3-26 (188)
389 CHL00081 chlI Mg-protoporyphyr 94.4 0.037 8E-07 52.9 3.6 45 75-125 17-61 (350)
390 TIGR01842 type_I_sec_PrtD type 94.4 0.093 2E-06 53.8 6.8 27 100-126 342-368 (544)
391 PF06309 Torsin: Torsin; Inte 94.4 0.076 1.7E-06 42.6 4.8 50 76-125 26-76 (127)
392 COG1131 CcmA ABC-type multidru 94.4 0.11 2.3E-06 48.8 6.6 27 101-127 30-56 (293)
393 COG0237 CoaE Dephospho-CoA kin 94.4 0.033 7.1E-07 49.0 3.0 24 102-125 2-25 (201)
394 TIGR00064 ftsY signal recognit 94.4 0.037 8.1E-07 51.2 3.5 25 100-124 70-94 (272)
395 TIGR03574 selen_PSTK L-seryl-t 94.4 0.024 5.3E-07 51.8 2.2 23 104-126 1-23 (249)
396 PRK08356 hypothetical protein; 94.4 0.035 7.6E-07 48.7 3.1 23 102-124 5-27 (195)
397 PRK10790 putative multidrug tr 94.4 0.047 1E-06 56.7 4.5 27 100-126 365-391 (592)
398 KOG0927 Predicted transporter 94.4 0.2 4.4E-06 49.8 8.5 25 102-126 101-125 (614)
399 KOG0736 Peroxisome assembly fa 94.4 0.18 3.8E-06 52.2 8.3 90 75-173 672-775 (953)
400 PF02374 ArsA_ATPase: Anion-tr 94.4 0.03 6.6E-07 52.7 2.9 21 103-123 2-22 (305)
401 PRK13232 nifH nitrogenase redu 94.4 0.03 6.4E-07 52.0 2.8 21 103-123 2-22 (273)
402 PRK14721 flhF flagellar biosyn 94.4 0.11 2.4E-06 50.9 6.8 25 100-124 189-213 (420)
403 PLN02318 phosphoribulokinase/u 94.3 0.053 1.1E-06 55.0 4.6 28 99-126 62-89 (656)
404 COG1100 GTPase SAR1 and relate 94.3 0.032 7E-07 49.6 2.9 24 103-126 6-29 (219)
405 cd03287 ABC_MSH3_euk MutS3 hom 94.3 0.035 7.7E-07 49.7 3.1 106 102-208 31-160 (222)
406 PRK13407 bchI magnesium chelat 94.3 0.041 8.9E-07 52.4 3.7 45 75-125 8-52 (334)
407 TIGR00073 hypB hydrogenase acc 94.3 0.036 7.9E-07 49.1 3.1 27 99-125 19-45 (207)
408 cd01428 ADK Adenylate kinase ( 94.3 0.027 5.8E-07 49.2 2.3 23 105-127 2-24 (194)
409 PF00006 ATP-synt_ab: ATP synt 94.3 0.059 1.3E-06 47.9 4.4 26 102-127 15-40 (215)
410 PRK10789 putative multidrug tr 94.3 0.049 1.1E-06 56.2 4.5 27 100-126 339-365 (569)
411 KOG0731 AAA+-type ATPase conta 94.3 0.055 1.2E-06 56.2 4.7 153 75-232 311-495 (774)
412 PRK05800 cobU adenosylcobinami 94.3 0.089 1.9E-06 45.1 5.3 22 104-125 3-24 (170)
413 TIGR01425 SRP54_euk signal rec 94.3 0.072 1.6E-06 52.3 5.3 25 100-124 98-122 (429)
414 TIGR00708 cobA cob(I)alamin ad 94.2 0.083 1.8E-06 45.1 5.0 48 155-202 89-140 (173)
415 PF00005 ABC_tran: ABC transpo 94.2 0.046 9.9E-07 44.7 3.4 25 102-126 11-35 (137)
416 cd02040 NifH NifH gene encodes 94.2 0.035 7.5E-07 51.3 2.9 21 103-123 2-22 (270)
417 PHA02530 pseT polynucleotide k 94.2 0.035 7.5E-07 52.2 3.0 24 103-126 3-26 (300)
418 PF01926 MMR_HSR1: 50S ribosom 94.2 0.043 9.4E-07 43.5 3.1 21 105-125 2-22 (116)
419 PRK10416 signal recognition pa 94.2 0.043 9.4E-07 52.0 3.6 26 100-125 112-137 (318)
420 cd02029 PRK_like Phosphoribulo 94.2 0.065 1.4E-06 49.0 4.5 22 104-125 1-22 (277)
421 PRK13536 nodulation factor exp 94.2 0.12 2.6E-06 49.6 6.6 26 101-126 66-91 (340)
422 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.032 7E-07 42.1 2.2 21 104-124 1-21 (99)
423 PRK09825 idnK D-gluconate kina 94.2 0.038 8.2E-07 47.6 2.9 24 103-126 4-27 (176)
424 cd04139 RalA_RalB RalA/RalB su 94.2 0.038 8.2E-07 46.4 2.9 22 104-125 2-23 (164)
425 TIGR00176 mobB molybdopterin-g 94.2 0.031 6.6E-07 47.1 2.2 22 104-125 1-22 (155)
426 PRK08149 ATP synthase SpaL; Va 94.2 0.077 1.7E-06 52.1 5.3 26 102-127 151-176 (428)
427 COG1132 MdlB ABC-type multidru 94.1 0.052 1.1E-06 56.0 4.3 27 101-127 354-380 (567)
428 COG1123 ATPase components of v 94.1 0.12 2.6E-06 51.8 6.6 107 100-209 33-222 (539)
429 PLN02348 phosphoribulokinase 94.1 0.045 9.7E-07 52.8 3.4 27 99-125 46-72 (395)
430 COG0283 Cmk Cytidylate kinase 94.1 0.1 2.2E-06 45.8 5.3 54 103-156 5-64 (222)
431 PRK06731 flhF flagellar biosyn 94.1 0.18 3.9E-06 46.6 7.2 24 101-124 74-97 (270)
432 PRK06761 hypothetical protein; 94.1 0.036 7.9E-07 51.3 2.7 25 103-127 4-28 (282)
433 TIGR02204 MsbA_rel ABC transpo 94.1 0.042 9.2E-07 56.8 3.5 27 100-126 364-390 (576)
434 COG0003 ArsA Predicted ATPase 94.1 0.042 9.1E-07 51.9 3.2 21 102-122 2-22 (322)
435 COG2401 ABC-type ATPase fused 94.1 0.059 1.3E-06 51.8 4.1 60 154-214 517-580 (593)
436 PRK03731 aroL shikimate kinase 94.1 0.036 7.8E-07 47.4 2.5 23 104-126 4-26 (171)
437 PF13245 AAA_19: Part of AAA d 94.1 0.046 9.9E-07 39.9 2.7 20 102-121 10-29 (76)
438 PRK08927 fliI flagellum-specif 94.1 0.11 2.4E-06 51.1 6.1 26 102-127 158-183 (442)
439 COG3640 CooC CO dehydrogenase 94.0 0.043 9.3E-07 48.7 2.8 19 104-122 2-20 (255)
440 smart00534 MUTSac ATPase domai 94.0 0.042 9.1E-07 47.8 2.9 104 104-208 1-128 (185)
441 cd02022 DPCK Dephospho-coenzym 94.0 0.034 7.4E-07 48.0 2.3 21 104-124 1-21 (179)
442 cd01858 NGP_1 NGP-1. Autoanti 94.0 0.1 2.2E-06 43.9 5.1 25 102-126 102-126 (157)
443 PRK14531 adenylate kinase; Pro 94.0 0.041 8.9E-07 47.7 2.7 24 104-127 4-27 (183)
444 cd01394 radB RadB. The archaea 94.0 0.079 1.7E-06 47.2 4.6 26 100-125 17-42 (218)
445 cd01672 TMPK Thymidine monopho 94.0 0.038 8.2E-07 48.2 2.5 23 104-126 2-24 (200)
446 PRK01184 hypothetical protein; 94.0 0.042 9.2E-07 47.6 2.8 22 103-125 2-23 (184)
447 COG1117 PstB ABC-type phosphat 94.0 0.33 7.2E-06 42.7 8.1 25 100-124 31-55 (253)
448 TIGR01650 PD_CobS cobaltochela 94.0 0.12 2.7E-06 48.7 6.0 49 70-127 41-89 (327)
449 smart00173 RAS Ras subfamily o 94.0 0.044 9.6E-07 46.1 2.8 22 104-125 2-23 (164)
450 PRK13768 GTPase; Provisional 94.0 0.046 9.9E-07 50.1 3.1 22 102-123 2-23 (253)
451 cd04119 RJL RJL (RabJ-Like) su 94.0 0.046 9.9E-07 46.0 2.9 22 105-126 3-24 (168)
452 PLN02165 adenylate isopentenyl 94.0 0.045 9.7E-07 51.7 3.0 29 99-127 40-68 (334)
453 PRK00023 cmk cytidylate kinase 94.0 0.099 2.1E-06 47.0 5.2 26 102-127 4-29 (225)
454 cd03285 ABC_MSH2_euk MutS2 hom 93.9 0.36 7.8E-06 43.3 8.8 23 101-123 29-51 (222)
455 cd01120 RecA-like_NTPases RecA 93.9 0.035 7.5E-07 46.5 2.1 22 104-125 1-22 (165)
456 PRK13233 nifH nitrogenase redu 93.9 0.044 9.6E-07 50.9 3.0 20 103-122 3-22 (275)
457 TIGR00455 apsK adenylylsulfate 93.9 0.055 1.2E-06 46.9 3.4 26 100-125 16-41 (184)
458 PRK12338 hypothetical protein; 93.9 0.045 9.8E-07 51.5 3.0 26 102-127 4-29 (319)
459 TIGR01663 PNK-3'Pase polynucle 93.9 0.092 2E-06 53.0 5.4 63 99-172 366-429 (526)
460 PRK08099 bifunctional DNA-bind 93.9 0.037 8E-07 54.1 2.5 28 100-127 217-244 (399)
461 COG1119 ModF ABC-type molybden 93.9 0.13 2.8E-06 46.1 5.6 22 104-125 59-80 (257)
462 PRK02496 adk adenylate kinase; 93.9 0.042 9.1E-07 47.6 2.6 23 104-126 3-25 (184)
463 PLN02796 D-glycerate 3-kinase 93.9 0.091 2E-06 49.9 4.9 27 100-126 98-124 (347)
464 PRK13235 nifH nitrogenase redu 93.9 0.042 9E-07 51.0 2.7 21 103-123 2-22 (274)
465 cd04163 Era Era subfamily. Er 93.8 0.057 1.2E-06 45.1 3.3 24 102-125 3-26 (168)
466 PRK10522 multidrug transporter 93.8 0.16 3.6E-06 52.1 7.2 27 100-126 347-373 (547)
467 TIGR01351 adk adenylate kinase 93.8 0.04 8.7E-07 48.9 2.4 23 105-127 2-24 (210)
468 cd01862 Rab7 Rab7 subfamily. 93.8 0.051 1.1E-06 46.1 2.9 22 104-125 2-23 (172)
469 KOG1970 Checkpoint RAD17-RFC c 93.8 0.19 4.2E-06 50.0 7.0 46 82-128 89-136 (634)
470 cd03116 MobB Molybdenum is an 93.7 0.054 1.2E-06 45.8 2.9 23 103-125 2-24 (159)
471 PRK14526 adenylate kinase; Pro 93.7 0.13 2.9E-06 45.6 5.5 22 105-126 3-24 (211)
472 cd01130 VirB11-like_ATPase Typ 93.7 0.085 1.8E-06 45.9 4.2 36 83-125 13-48 (186)
473 PRK14528 adenylate kinase; Pro 93.7 0.044 9.5E-07 47.7 2.4 24 103-126 2-25 (186)
474 TIGR02237 recomb_radB DNA repa 93.7 0.061 1.3E-06 47.6 3.4 26 99-124 9-34 (209)
475 PF01078 Mg_chelatase: Magnesi 93.7 0.1 2.2E-06 45.9 4.5 42 75-124 3-44 (206)
476 PF03215 Rad17: Rad17 cell cyc 93.7 0.053 1.1E-06 54.8 3.2 53 75-128 19-71 (519)
477 PTZ00494 tuzin-like protein; P 93.7 1.1 2.4E-05 44.0 11.8 154 72-230 368-542 (664)
478 COG2074 2-phosphoglycerate kin 93.7 0.21 4.4E-06 44.9 6.4 50 85-139 77-132 (299)
479 TIGR01420 pilT_fam pilus retra 93.7 0.059 1.3E-06 51.8 3.4 101 102-207 122-235 (343)
480 TIGR01618 phage_P_loop phage n 93.7 0.048 1.1E-06 48.6 2.6 23 102-124 12-34 (220)
481 TIGR00231 small_GTP small GTP- 93.7 0.056 1.2E-06 44.5 2.9 23 104-126 3-25 (161)
482 COG1419 FlhF Flagellar GTP-bin 93.7 0.13 2.9E-06 49.5 5.7 69 101-171 202-290 (407)
483 cd03284 ABC_MutS1 MutS1 homolo 93.7 0.042 9.2E-07 49.0 2.3 21 103-123 31-51 (216)
484 PF00142 Fer4_NifH: 4Fe-4S iro 93.6 0.064 1.4E-06 48.7 3.3 21 103-123 1-21 (273)
485 TIGR03498 FliI_clade3 flagella 93.6 0.14 3E-06 50.3 5.8 26 102-127 140-165 (418)
486 PRK05986 cob(I)alamin adenolsy 93.6 0.11 2.4E-06 45.0 4.6 48 155-202 107-158 (191)
487 PF07724 AAA_2: AAA domain (Cd 93.6 0.063 1.4E-06 46.0 3.1 26 101-126 2-27 (171)
488 cd04138 H_N_K_Ras_like H-Ras/N 93.6 0.056 1.2E-06 45.2 2.8 22 104-125 3-24 (162)
489 smart00072 GuKc Guanylate kina 93.6 0.06 1.3E-06 46.7 3.1 25 102-126 2-26 (184)
490 cd02032 Bchl_like This family 93.6 0.05 1.1E-06 50.2 2.7 20 104-123 2-21 (267)
491 PRK14493 putative bifunctional 93.6 0.057 1.2E-06 50.0 2.9 23 103-125 2-24 (274)
492 PF10662 PduV-EutP: Ethanolami 93.6 0.057 1.2E-06 44.5 2.6 24 103-126 2-25 (143)
493 smart00175 RAB Rab subfamily o 93.5 0.061 1.3E-06 45.2 2.9 22 105-126 3-24 (164)
494 cd01135 V_A-ATPase_B V/A-type 93.5 0.18 4E-06 46.3 6.2 25 102-126 69-93 (276)
495 TIGR00041 DTMP_kinase thymidyl 93.5 0.058 1.3E-06 47.1 2.9 25 102-126 3-27 (195)
496 cd03225 ABC_cobalt_CbiO_domain 93.5 0.063 1.4E-06 47.6 3.1 25 101-125 26-50 (211)
497 PF00154 RecA: recA bacterial 93.5 0.13 2.9E-06 48.4 5.4 73 99-171 50-140 (322)
498 COG1763 MobB Molybdopterin-gua 93.5 0.057 1.2E-06 45.5 2.7 24 102-125 2-25 (161)
499 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.061 1.3E-06 48.0 3.0 24 102-125 30-53 (218)
500 PRK13231 nitrogenase reductase 93.5 0.06 1.3E-06 49.6 3.1 23 103-125 3-25 (264)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-56 Score=466.33 Aligned_cols=371 Identities=24% Similarity=0.431 Sum_probs=303.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcCcccccCCc---ccCCCCcccccccCCCceecchhhHHHHHHHHhcCCCCCCC
Q 038234 24 FLRHDIALKIKAINEKFDDIAKQKDLFNFNVNITKR---IETPGRVQSIFFIDESEICGRDYKKNELLSKLLSDSSDQQK 100 (406)
Q Consensus 24 ~~r~~ia~ki~~i~~~l~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~ 100 (406)
.++++.+..+..+..++..+.+....+......... ..+...+...|...... ||.+..++++++.|..+.
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~----- 178 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD----- 178 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-----
Confidence 356666667777777777777666666654422111 11111233334444444 999999999999999652
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh-H-------------------HHHHHHHHHhcCCCCCCC--CHHHHHHHHHhh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD-F-------------------RVAKAIIAALGCETSNLG--SLQSLVRCISES 158 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~-~-------------------~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~ 158 (406)
..+++|+||||+||||||++++|+.. + +++.+|+..++....... +.++++..|.+.
T Consensus 179 -~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 179 -VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred -CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 38999999999999999999999987 3 788899998877544332 346888999999
Q ss_pred ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH-hccCCccccCCCChHHHHHhhhhhc-----
Q 038234 159 IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM-MESTNFISIKELSTQECWSLFKQES----- 232 (406)
Q Consensus 159 l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~----- 232 (406)
|++|||||||||||+.. +|+.+..++|...+||+|++|||++.|+.. ++....+++..|+++|||.||.+.+
T Consensus 258 L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred hccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 99999999999999875 699999999999889999999999999999 7888999999999999999999988
Q ss_pred ------------cccch---hHHHHHHhhhhcchhhHHhhhhhccchhhh----hhhhhhhHHHHHHhccccCChhhhhH
Q 038234 233 ------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDSELWQ----LQELEKDLFSLLLLNYYDLPYRIKQC 293 (406)
Q Consensus 233 ------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~c 293 (406)
++++| |||+.++|++|+.+.+..+|+.+.+...+. .+..++.++.+|.+||+.||+++|.|
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~C 415 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSC 415 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHH
Confidence 67788 999999999999999999999998876544 23357789999999999999999999
Q ss_pred HhhhcccCCCCccCHHHHHHHHHHCCCccc-ccCCCHHHHHHHHHHHHHhcCCcceeecCCCCcccEEEECHHHHHHHHH
Q 038234 294 FRYCFISPKDSCIWKEDLIKLWIAQSFIEA-KENKEMEIIDEEYFDYLTARSFFQEFHKGSDDIITECKMHDIVHDFAQF 372 (406)
Q Consensus 294 fl~la~Fp~~~~i~~~~Li~~W~aeg~i~~-~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~ 372 (406)
|+|||+||+||.|+++.|+.+|+||||+.+ ..+.++++.|+.|+.+|++++|++..... +...+|+|||+||++|.+
T Consensus 416 FLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 416 FLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALW 493 (889)
T ss_pred HHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHH
Confidence 999999999999999999999999999988 45788999999999999999999865433 566789999999999999
Q ss_pred hhh-----cCeEEEEeC-CCCCcccCCCCCCeeEEEeec
Q 038234 373 LRK-----NQCLSIEVN-SPNQSLTNISWEKLQHSTLVP 405 (406)
Q Consensus 373 ~~~-----~e~~~~~~~-~~~~~~~~~~~~~~r~lsi~~ 405 (406)
+|+ +|+.+.... +.........+..+||+|+++
T Consensus 494 ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~ 532 (889)
T KOG4658|consen 494 IASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMN 532 (889)
T ss_pred HhccccccccceEEECCcCccccccccchhheeEEEEec
Confidence 999 777555543 222212234567899999876
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.2e-41 Score=313.66 Aligned_cols=239 Identities=32% Similarity=0.528 Sum_probs=193.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------------HHHHHHHHHhcC
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------------RVAKAIIAALGC 140 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~~~i~~~l~~ 140 (406)
|+.++++|.+.|... .++.++|+|+||||+||||||.+++++... .+...++..+..
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 789999999999964 367999999999999999999999987332 678889999987
Q ss_pred CCC---CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHHhcc-CCcccc
Q 038234 141 ETS---NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARMMES-TNFISI 216 (406)
Q Consensus 141 ~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l 216 (406)
... ...+...+...+.+.|.++++||||||||+.. .|+.+...++....|++||||||+..++..++. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 743 45678889999999999999999999998764 787787777777779999999999998887665 678999
Q ss_pred CCCChHHHHHhhhhhc-----------------cccch---hHHHHHHhhhhcchhhHHhhhhhccchhhhhh---hhhh
Q 038234 217 KELSTQECWSLFKQES-----------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDSELWQLQ---ELEK 273 (406)
Q Consensus 217 ~~L~~~~a~~Lf~~~~-----------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~~~~~~~---~~~~ 273 (406)
++|+.++|++||.+.+ |++.| |||++++|++|+.+.+..+|...++....... ....
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875 56666 99999999999877777889888776554432 2457
Q ss_pred hHHHHHHhccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccc
Q 038234 274 DLFSLLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAK 324 (406)
Q Consensus 274 ~~~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~ 324 (406)
++..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 899999999999999999999999999999999999999999999998764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-38 Score=347.41 Aligned_cols=314 Identities=17% Similarity=0.168 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCccccc-------CCcccCCCCcccccccCCCceecchhhHHHHHHHHhcCCCCCCCCc
Q 038234 30 ALKIKAINEKFDDIAKQKDLFNFNVNI-------TKRIETPGRVQSIFFIDESEICGRDYKKNELLSKLLSDSSDQQKPI 102 (406)
Q Consensus 30 a~ki~~i~~~l~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~ 102 (406)
..++++|++.|.+++ ...++.+.... .............+..+.+.+|||+..++++..+|... .+++
T Consensus 133 ~~~~~~w~~al~~~~-~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVA-NILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHh-CcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 357899999999998 44444443211 01111112222334445577999999999999988644 4568
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChHHHH--------------------------------HHHHHHhcCCCC-CCCCHH
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDFRVA--------------------------------KAIIAALGCETS-NLGSLQ 149 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------------------------------~~i~~~l~~~~~-~~~~~~ 149 (406)
++|+|+||||+||||||+++|+.....+. ..++..+..... ....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~-- 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH-- 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC--
Confidence 99999999999999999999886543210 111111111100 0001
Q ss_pred HHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHHhccCCccccCCCChHHHHHhhh
Q 038234 150 SLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARMMESTNFISIKELSTQECWSLFK 229 (406)
Q Consensus 150 ~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 229 (406)
...+++.+.+||+||||||||+. ..|+.+.....+.++||+||||||++.++..++...+|+++.|+.++||+||+
T Consensus 286 --~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 286 --LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFC 361 (1153)
T ss_pred --HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHH
Confidence 13466778899999999999765 46888877666778899999999999999887778899999999999999998
Q ss_pred hhc----------------cccch---hHHHHHHhhhhcchhhHHhhhhhccchhhhhhhhhhhHHHHHHhccccCCh-h
Q 038234 230 QES----------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDSELWQLQELEKDLFSLLLLNYYDLPY-R 289 (406)
Q Consensus 230 ~~~----------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~ 289 (406)
+.| ++++| |||++++|++|+.+. ..+|+.++.++... .+.++.++|++||++|++ .
T Consensus 362 ~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~-~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~ 437 (1153)
T PLN03210 362 RSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRD-KEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKK 437 (1153)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCC-HHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccc
Confidence 876 56666 999999999999875 78999998876443 456899999999999987 5
Q ss_pred hhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHHHhcCCcceeecCCCCcccEEEECHHHHHH
Q 038234 290 IKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYLTARSFFQEFHKGSDDIITECKMHDIVHDF 369 (406)
Q Consensus 290 ~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~ 369 (406)
.|.||+++|+||.+..++ .+..|++.+.... +..++.|+++|||+... ..+.|||++|+|
T Consensus 438 ~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~ 497 (1153)
T PLN03210 438 DKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMHSLLQEM 497 (1153)
T ss_pred hhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhhhHHHHH
Confidence 999999999999986553 3677877765432 22388999999998632 258999999999
Q ss_pred HHHhhhcCe
Q 038234 370 AQFLRKNQC 378 (406)
Q Consensus 370 ~~~~~~~e~ 378 (406)
|+++++++.
T Consensus 498 ~r~i~~~~~ 506 (1153)
T PLN03210 498 GKEIVRAQS 506 (1153)
T ss_pred HHHHHHhhc
Confidence 999998774
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=5.3e-11 Score=129.02 Aligned_cols=267 Identities=15% Similarity=0.180 Sum_probs=157.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh-H-------------HHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD-F-------------RVAKAIIAALGC 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~-------------~~~~~i~~~l~~ 140 (406)
+.++-|+.-.+ .|.. ....+++.|+|++|.||||++.+...... + .|...++..+..
T Consensus 14 ~~~~~R~rl~~----~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLA----KLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHH----HHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 45666654444 4432 23477999999999999999988765321 1 455555555532
Q ss_pred CCCC-------------CCCHHHHHHHHHhhcc--CcceeEEeeCCCCcCccCcc-hhhhccCCCCCCcEEEEecCChH-
Q 038234 141 ETSN-------------LGSLQSLVRCISESIE--GKKYLVVLDDVWTDDYTKWE-PFQRCSANGQCGNNILVTTHKKT- 203 (406)
Q Consensus 141 ~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~IivTtR~~~- 203 (406)
..+. ..+...+...+...+. +.+++|||||++.-+..... .+...+.....+.++|||||...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 1111 0122223333332222 68999999999765433333 34333444455778889999842
Q ss_pred --HHHHhccCCccccC----CCChHHHHHhhhhhc-----------cccch---hHHHHHHhhhhcchhhHHhhhhhccc
Q 038234 204 --VARMMESTNFISIK----ELSTQECWSLFKQES-----------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDS 263 (406)
Q Consensus 204 --v~~~~~~~~~~~l~----~L~~~~a~~Lf~~~~-----------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~ 263 (406)
...........++. +|+.+|+..+|.... +...| |+++..++..+....... ..
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~------~~ 238 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSL------HD 238 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch------hh
Confidence 11111123345566 999999999997643 33344 999988876654332100 00
Q ss_pred hhhhhhh-hhhhHHHHHHh-ccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHHH
Q 038234 264 ELWQLQE-LEKDLFSLLLL-NYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYLT 341 (406)
Q Consensus 264 ~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~ 341 (406)
..+.... ....+...+.- .|+.||++.+..++.+|+++ . ++.+-+-.+. | .+.+...+++|.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~----------~~~~~~~L~~l~ 302 (903)
T PRK04841 239 SARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRVT---G----------EENGQMRLEELE 302 (903)
T ss_pred hhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C----------CCcHHHHHHHHH
Confidence 0011111 12335554433 37899999999999999997 3 5544333221 1 112356799999
Q ss_pred hcCCcceeecCCCCcccEEEECHHHHHHHHHhhh
Q 038234 342 ARSFFQEFHKGSDDIITECKMHDIVHDFAQFLRK 375 (406)
Q Consensus 342 ~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~ 375 (406)
+.+++..... ..+ ..|+.|++++++++....
T Consensus 303 ~~~l~~~~~~-~~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 303 RQGLFIQRMD-DSG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HCCCeeEeec-CCC--CEEehhHHHHHHHHHHHH
Confidence 9999743211 111 368899999999987653
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=3.3e-09 Score=104.10 Aligned_cols=288 Identities=14% Similarity=0.050 Sum_probs=154.2
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------------HHH
Q 038234 71 FIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------------RVA 131 (406)
Q Consensus 71 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~ 131 (406)
...++.++||++++++|...|..... ......+.|+|++|+|||++++.+++.... .++
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 33556799999999999999854321 223445789999999999999999875321 566
Q ss_pred HHHHHHhcCC-CC-CCCCHHHHHHHHHhhcc--CcceeEEeeCCCCcC-ccCcchh---hhccCCCC-CCcEEEEecCCh
Q 038234 132 KAIIAALGCE-TS-NLGSLQSLVRCISESIE--GKKYLVVLDDVWTDD-YTKWEPF---QRCSANGQ-CGNNILVTTHKK 202 (406)
Q Consensus 132 ~~i~~~l~~~-~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~-~~~~~~l---~~~l~~~~-~gs~IivTtR~~ 202 (406)
..++.++... .+ ...+.+++...+.+.+. +++.+||||+++.-. ....+.+ ...+.... ....+|.++...
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 7788887652 22 22345666666666664 456899999996532 1112222 22222211 122356555554
Q ss_pred HHHHHhc-------cCCccccCCCChHHHHHhhhhhc---ccc-ch-hHHHHHHhhhhcch-hhH--------Hhhhhhc
Q 038234 203 TVARMME-------STNFISIKELSTQECWSLFKQES---SAK-PC-LLLQKLLGVSCALK-ELE--------MSGKNSL 261 (406)
Q Consensus 203 ~v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~---i~~-~c-PLai~~~g~~L~~~-~~~--------~~w~~~~ 261 (406)
.+..... ....+.+.+++.++...++...+ ... .. +-++..++...... .+. ..+....
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3333221 13467899999999999988765 111 11 33333333322110 001 1111110
Q ss_pred cchh-----hhhhhhhhh-HHHHHHhccccCChhhhhHHhhhcccCC--CCccCHHHHHHH--HHHCCCcccccCCCHHH
Q 038234 262 DSEL-----WQLQELEKD-LFSLLLLNYYDLPYRIKQCFRYCFISPK--DSCIWKEDLIKL--WIAQSFIEAKENKEMEI 331 (406)
Q Consensus 262 ~~~~-----~~~~~~~~~-~~~~l~~sy~~L~~~~k~cfl~la~Fp~--~~~i~~~~Li~~--W~aeg~i~~~~~~~~e~ 331 (406)
.... .......+. -...+.-.+..||.+.|..+..++-.-+ ...+....+... .+++.+- ....+. .
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~--~~~~~~-~ 340 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG--YEPRTH-T 340 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC--CCcCcH-H
Confidence 0000 000000111 1233455688999988887776653321 123555555433 2232210 011122 2
Q ss_pred HHHHHHHHHHhcCCcceeec--CCCCcccEEEEC
Q 038234 332 IDEEYFDYLTARSFFQEFHK--GSDDIITECKMH 363 (406)
Q Consensus 332 ~~~~~l~~L~~~sll~~~~~--~~~~~~~~~~mH 363 (406)
....|++.|...++|+.... +..|..+.++++
T Consensus 341 ~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 341 RFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 34669999999999986543 233444555554
No 6
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=7.1e-10 Score=105.85 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=132.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+|+|++..++.+...+..... .......+.|+|++|+|||+||+.+++.....+. ....+.......+...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~-------~~~~~~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR-------ITSGPALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE-------EEecccccChHHHHHH
Confidence 5699999999998887753211 0234567889999999999999999876532110 0000011111222222
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccC-------------------CCCCCcEEEEecCChHHHHHhc--cCCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSA-------------------NGQCGNNILVTTHKKTVARMME--STNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~-------------------~~~~gs~IivTtR~~~v~~~~~--~~~~ 213 (406)
+.. + ++.-+|++|++........+.+...+. ...+.+-|..|++...+...+. ....
T Consensus 97 l~~-l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~ 174 (328)
T PRK00080 97 LTN-L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIV 174 (328)
T ss_pred HHh-c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCee
Confidence 222 2 345577888875432111111111110 0112345666777544333221 1356
Q ss_pred cccCCCChHHHHHhhhhhccccch---hHHHHHHhhhhcchhh--------HHhhhhhccchhhhhhhhhhhHHHHHHhc
Q 038234 214 ISIKELSTQECWSLFKQESSAKPC---LLLQKLLGVSCALKEL--------EMSGKNSLDSELWQLQELEKDLFSLLLLN 282 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~i~~~c---PLai~~~g~~L~~~~~--------~~~w~~~~~~~~~~~~~~~~~~~~~l~~s 282 (406)
+.+++++.++..+++.+.+-.... |=++..++........ ...|........ -....-......+...
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~-I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGV-ITKEIADKALDMLGVD 253 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCC
Confidence 899999999999999877611111 3233333222211110 111111110000 0011223445667788
Q ss_pred cccCChhhhhHHh-hhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHH-HHHhcCCccee
Q 038234 283 YYDLPYRIKQCFR-YCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFD-YLTARSFFQEF 349 (406)
Q Consensus 283 y~~L~~~~k~cfl-~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~~sll~~~ 349 (406)
+..|++..+..+. .+..|+.+ .+..+.+.... +.+.. .+++.++ .|++.+||+..
T Consensus 254 ~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------g~~~~----~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 254 ELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------GEERD----TIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred cCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------CCCcc----hHHHHhhHHHHHcCCcccC
Confidence 8899887777665 66777766 46666654433 11122 3344456 89999999743
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=1e-09 Score=103.86 Aligned_cols=251 Identities=11% Similarity=0.078 Sum_probs=127.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+|+|++..+++|..++..... .......+.++|++|+|||+||+.+++.....+. ............+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~-------~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK-------ITSGPALEKPGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-------EeccchhcCchhHHHH
Confidence 4689999999999888863211 0233556889999999999999998876432100 0000001111222222
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccC-------------------CCCCCcEEEEecCChHHHHHhc--cCCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSA-------------------NGQCGNNILVTTHKKTVARMME--STNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~-------------------~~~~gs~IivTtR~~~v~~~~~--~~~~ 213 (406)
+... +...+|++|++..-.....+.+...+. ...+.+-|..||+...+..... ....
T Consensus 76 l~~~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~ 153 (305)
T TIGR00635 76 LTNL--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGII 153 (305)
T ss_pred HHhc--ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceE
Confidence 2221 234577777774322211111211110 1112445566777654433221 1456
Q ss_pred cccCCCChHHHHHhhhhhccccch---hHHHHHHhhhhcchhh------HHhhhhh--ccchhhhhhhhhhhHHHHHHhc
Q 038234 214 ISIKELSTQECWSLFKQESSAKPC---LLLQKLLGVSCALKEL------EMSGKNS--LDSELWQLQELEKDLFSLLLLN 282 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~i~~~c---PLai~~~g~~L~~~~~------~~~w~~~--~~~~~~~~~~~~~~~~~~l~~s 282 (406)
+.+++++.++..+++.+.+-.... |=++..++........ ...|... .... .-..+.-......+...
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~-~it~~~v~~~l~~l~~~ 232 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQK-IINRDIALKALEMLMID 232 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCC-CcCHHHHHHHHHHhCCC
Confidence 789999999999999876611111 3333333322211110 0111110 1100 00011112333346778
Q ss_pred cccCChhhhhHHh-hhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHH-HHHhcCCcce
Q 038234 283 YYDLPYRIKQCFR-YCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFD-YLTARSFFQE 348 (406)
Q Consensus 283 y~~L~~~~k~cfl-~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~-~L~~~sll~~ 348 (406)
|..|+++.+..+. .+..++.+ .+..+.+.... | .+ ...++..++ .|++++||+.
T Consensus 233 ~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g-------~~-~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 233 ELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G-------ED-ADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C-------CC-cchHHHhhhHHHHHcCCccc
Confidence 8999988777666 55666544 45554443332 1 11 124456677 6999999963
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=2.3e-08 Score=101.67 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=161.6
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh-----------------HHHHHHHHH
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD-----------------FRVAKAIIA 136 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-----------------~~~~~~i~~ 136 (406)
+...|-| ..+.+.|.. ....+.+.|..++|.|||||+.+...... .+|...++.
T Consensus 18 ~~~~v~R----~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVR----PRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred ccccccc----HHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHH
Confidence 3445555 455555654 34589999999999999999988863211 177777777
Q ss_pred HhcCCCCCCC-------------CHHHHHHHHHhhc--cCcceeEEeeCCCCcCccCcch-hhhccCCCCCCcEEEEecC
Q 038234 137 ALGCETSNLG-------------SLQSLVRCISESI--EGKKYLVVLDDVWTDDYTKWEP-FQRCSANGQCGNNILVTTH 200 (406)
Q Consensus 137 ~l~~~~~~~~-------------~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~-l~~~l~~~~~gs~IivTtR 200 (406)
.++...++.. +...+...+..-+ ..++.++||||.+-......+. +...+.+...+-.+++|||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 7775544332 2223333333322 2568999999986543333333 4444556667889999999
Q ss_pred ChHHHHH---hccCCcccc----CCCChHHHHHhhhhhc-----------c---ccchhHHHHHHhhhhcchhhHHhhhh
Q 038234 201 KKTVARM---MESTNFISI----KELSTQECWSLFKQES-----------S---AKPCLLLQKLLGVSCALKELEMSGKN 259 (406)
Q Consensus 201 ~~~v~~~---~~~~~~~~l----~~L~~~~a~~Lf~~~~-----------i---~~~cPLai~~~g~~L~~~~~~~~w~~ 259 (406)
...-... --....+++ -.|+.+|+.++|.... + .++=+-|+..++-.++.+.+.+.-..
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 8632211 111233333 3688999999998755 1 11116777777777763333332222
Q ss_pred hccchhhhhhhhhhhHHH-HHHhccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHH
Q 038234 260 SLDSELWQLQELEKDLFS-LLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFD 338 (406)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~ 338 (406)
.+... .+.+.. ...--++.||+++|..++-+|+++. +.. .|+..- +-++.+...++
T Consensus 249 ~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~~-eL~~~L------------tg~~ng~amLe 305 (894)
T COG2909 249 GLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FND-ELCNAL------------TGEENGQAMLE 305 (894)
T ss_pred hccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hhH-HHHHHH------------hcCCcHHHHHH
Confidence 22211 111111 1234478899999999999999876 322 222221 11234556799
Q ss_pred HHHhcCCcceeecCCCCcccEEEECHHHHHHHHHhhhc
Q 038234 339 YLTARSFFQEFHKGSDDIITECKMHDIVHDFAQFLRKN 376 (406)
Q Consensus 339 ~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~ 376 (406)
+|.+++|+-..-.+ .+ ..|+.|.++.+|.+...+.
T Consensus 306 ~L~~~gLFl~~Ldd-~~--~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDD-EG--QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecC-CC--ceeehhHHHHHHHHhhhcc
Confidence 99999998432222 22 3799999999999876554
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=6.3e-08 Score=94.00 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=142.9
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh-----------------------HH
Q 038234 73 DESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD-----------------------FR 129 (406)
Q Consensus 73 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-----------------------~~ 129 (406)
.++.++||++++++|...|..... ......+.|+|++|+|||++++.+++... ..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 335799999999999999864221 23345689999999999999999986321 15
Q ss_pred HHHHHHHHhc---CCCCC-CCCHHHHHHHHHhhc--cCcceeEEeeCCCCcCccC---cchhhhc--cCCCC-CCcEEEE
Q 038234 130 VAKAIIAALG---CETSN-LGSLQSLVRCISESI--EGKKYLVVLDDVWTDDYTK---WEPFQRC--SANGQ-CGNNILV 197 (406)
Q Consensus 130 ~~~~i~~~l~---~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~~---~~~l~~~--l~~~~-~gs~Iiv 197 (406)
++..++.++. ...+. ..+..++...+.+.+ .+++++||||+++.-.... ...+... ..... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 6677777773 22211 123444555555554 3567899999996542111 1122211 11111 2234444
Q ss_pred ecCChHHHHHhc-----c--CCccccCCCChHHHHHhhhhhcc---ccc-h-hHHHHHHhhhhc-------chhh--HHh
Q 038234 198 TTHKKTVARMME-----S--TNFISIKELSTQECWSLFKQESS---AKP-C-LLLQKLLGVSCA-------LKEL--EMS 256 (406)
Q Consensus 198 TtR~~~v~~~~~-----~--~~~~~l~~L~~~~a~~Lf~~~~i---~~~-c-PLai~~~g~~L~-------~~~~--~~~ 256 (406)
++........+. . ...+.+.+.+.++..+++..++- ... + +-++..++.... .-.. ...
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444333222111 1 24678999999999999887651 111 1 222222222111 1000 001
Q ss_pred hhhhccchhhhh-----hh-hhhhHHHHHHhccccCChhhhhHHhhhcccC--CCCccCHHHHHHHHH--HCCCcccccC
Q 038234 257 GKNSLDSELWQL-----QE-LEKDLFSLLLLNYYDLPYRIKQCFRYCFISP--KDSCIWKEDLIKLWI--AQSFIEAKEN 326 (406)
Q Consensus 257 w~~~~~~~~~~~-----~~-~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp--~~~~i~~~~Li~~W~--aeg~i~~~~~ 326 (406)
+........... .. ...--.....-++..||.+.+..+..++..- ++..+....+...+- ++.+ . ...
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~-~~~ 328 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G-VDP 328 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C-CCC
Confidence 110100000000 00 0111123345567889998887766655321 333466666665332 2211 1 111
Q ss_pred CCHHHHHHHHHHHHHhcCCcceee
Q 038234 327 KEMEIIDEEYFDYLTARSFFQEFH 350 (406)
Q Consensus 327 ~~~e~~~~~~l~~L~~~sll~~~~ 350 (406)
-.......++..|...|||....
T Consensus 329 -~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 329 -LTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred -CcHHHHHHHHHHHHhcCCeEEEE
Confidence 22356678899999999998654
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.94 E-value=7e-10 Score=103.81 Aligned_cols=145 Identities=18% Similarity=0.314 Sum_probs=95.8
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHH
Q 038234 71 FIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQS 150 (406)
Q Consensus 71 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 150 (406)
++.+.+++|-+..+.++++ ...+....+||++|+||||||+.+.......| ..+........+...
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred hcChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHhhCCce-----EEeccccccHHHHHH
Confidence 3444566666655555554 45577888999999999999999887644321 122222333344444
Q ss_pred HHHHH-HhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE--ecCChHH---HHHhccCCccccCCCChHHH
Q 038234 151 LVRCI-SESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV--TTHKKTV---ARMMESTNFISIKELSTQEC 224 (406)
Q Consensus 151 ~~~~l-~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~a 224 (406)
+.+.- +....|++.+|++|.|+..+..+-+.| ||.-.+|..|+| ||.|+.. ....+...++.+++|+.++-
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 44444 333458999999999987665554444 455566877776 7777532 22234578999999999999
Q ss_pred HHhhhhhc
Q 038234 225 WSLFKQES 232 (406)
Q Consensus 225 ~~Lf~~~~ 232 (406)
..++.+.+
T Consensus 169 ~~~l~ra~ 176 (436)
T COG2256 169 KKLLKRAL 176 (436)
T ss_pred HHHHHHHH
Confidence 99998833
No 11
>PF05729 NACHT: NACHT domain
Probab=98.91 E-value=4.7e-09 Score=89.58 Aligned_cols=127 Identities=13% Similarity=0.212 Sum_probs=74.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChHH-----------------H-----HHHHHHHhcCCCCCC-CCHHHHHHHHHhhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDFR-----------------V-----AKAIIAALGCETSNL-GSLQSLVRCISESI 159 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-----------------~-----~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l 159 (406)
+++.|+|.+|+||||+++.++...... . ...+...+....... ........ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQ--ELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHH--HHHH
Confidence 478999999999999998887643320 0 001111111111110 01111111 1112
Q ss_pred cCcceeEEeeCCCCcCccC-------cch-hhhccCC-CCCCcEEEEecCChHH---HHHhccCCccccCCCChHHHHHh
Q 038234 160 EGKKYLVVLDDVWTDDYTK-------WEP-FQRCSAN-GQCGNNILVTTHKKTV---ARMMESTNFISIKELSTQECWSL 227 (406)
Q Consensus 160 ~~kr~LlVlDdvw~~~~~~-------~~~-l~~~l~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~~~~a~~L 227 (406)
..++++||||++.+..... +.. +...++. ..++.+++||+|.... .........+.+.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 5789999999995433211 122 2233333 3568899999998765 33344456899999999999998
Q ss_pred hhhh
Q 038234 228 FKQE 231 (406)
Q Consensus 228 f~~~ 231 (406)
+.+.
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8764
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.79 E-value=1e-07 Score=88.38 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=79.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH----------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHh----h-cc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF----------------RVAKAIIAALGCETSNLGSLQSLVRCISE----S-IE 160 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~-l~ 160 (406)
...+.|+|++|+|||||++.+++.... ++...+...++..... .+.......+.. . ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999876431 5556666666544322 222222333322 2 36
Q ss_pred CcceeEEeeCCCCcCccCcchhhhccC---CCCCCcEEEEecCChHHHHHhc----------cCCccccCCCChHHHHHh
Q 038234 161 GKKYLVVLDDVWTDDYTKWEPFQRCSA---NGQCGNNILVTTHKKTVARMME----------STNFISIKELSTQECWSL 227 (406)
Q Consensus 161 ~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~L~~~~a~~L 227 (406)
+++.+||+||+|..+...++.+..... .......|++|.... ...... ....+.+.+|+.+|...+
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 788999999998766555555543222 112223445555432 222211 134578999999999888
Q ss_pred hhhhc
Q 038234 228 FKQES 232 (406)
Q Consensus 228 f~~~~ 232 (406)
+....
T Consensus 201 l~~~l 205 (269)
T TIGR03015 201 IEHRL 205 (269)
T ss_pred HHHHH
Confidence 87543
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.78 E-value=1.1e-08 Score=92.46 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=35.8
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 77 ICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|+||++++++|.+++... ....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 789999999999988743 35688999999999999999888765
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=2.3e-08 Score=98.43 Aligned_cols=143 Identities=20% Similarity=0.319 Sum_probs=85.4
Q ss_pred CceecchhhHHH---HHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHH
Q 038234 75 SEICGRDYKKNE---LLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSL 151 (406)
Q Consensus 75 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 151 (406)
.+++|.+..+.. +.+++.. .....+.++|++|+||||||+.+++.....+. .+........+...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~-----~l~a~~~~~~~ir~i 80 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFE-----ALSAVTSGVKDLREV 80 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-----EEecccccHHHHHHH
Confidence 357888776555 6666653 33557888999999999999999875432110 011111111222333
Q ss_pred HHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE--ecCChH--H-HHHhccCCccccCCCChHHHH
Q 038234 152 VRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV--TTHKKT--V-ARMMESTNFISIKELSTQECW 225 (406)
Q Consensus 152 ~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~--v-~~~~~~~~~~~l~~L~~~~a~ 225 (406)
....... ..+++.+|+||+++.......+.+...+.. |..+++ ||.+.. + .........+.+.+++.++..
T Consensus 81 i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 3333222 246788999999987655455555555443 444444 344432 1 112233578899999999999
Q ss_pred Hhhhhh
Q 038234 226 SLFKQE 231 (406)
Q Consensus 226 ~Lf~~~ 231 (406)
.++.+.
T Consensus 158 ~lL~~~ 163 (413)
T PRK13342 158 QLLKRA 163 (413)
T ss_pred HHHHHH
Confidence 998774
No 15
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.63 E-value=3.9e-07 Score=96.85 Aligned_cols=279 Identities=15% Similarity=0.119 Sum_probs=154.7
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------------------HHHHH
Q 038234 77 ICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------------------RVAKA 133 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------------~~~~~ 133 (406)
++||+.+++.|...+..-. .....++.+.|.+|||||+|+++|.+.... +..++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 6899999999999887654 355669999999999999999999875432 11222
Q ss_pred HHHHh-------------------cCCCC------------------CC----CCHH-----HHHHHHHhhc-cCcceeE
Q 038234 134 IIAAL-------------------GCETS------------------NL----GSLQ-----SLVRCISESI-EGKKYLV 166 (406)
Q Consensus 134 i~~~l-------------------~~~~~------------------~~----~~~~-----~~~~~l~~~l-~~kr~Ll 166 (406)
+..++ +.... .. ...+ .....+.... +.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22222 11100 00 0000 1112222222 3569999
Q ss_pred EeeCCCCcCccCcchhhhccCCCC----CCcEEEE--ecCCh--HHHHHhccCCccccCCCChHHHHHhhhhhc------
Q 038234 167 VLDDVWTDDYTKWEPFQRCSANGQ----CGNNILV--TTHKK--TVARMMESTNFISIKELSTQECWSLFKQES------ 232 (406)
Q Consensus 167 VlDdvw~~~~~~~~~l~~~l~~~~----~gs~Iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~------ 232 (406)
|+||+++.|..+.+.+........ ....|.. |.+.. .+-..-.....+.|.||+..+...+.....
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999998888777666554443221 0112332 22222 111122235789999999999988887654
Q ss_pred -------cccc---hhHHHHHHhhhhcchh------hHHhhhhhccchhhhhhhhhhhHHHHHHhccccCChhhhhHHhh
Q 038234 233 -------SAKP---CLLLQKLLGVSCALKE------LEMSGKNSLDSELWQLQELEKDLFSLLLLNYYDLPYRIKQCFRY 296 (406)
Q Consensus 233 -------i~~~---cPLai~~~g~~L~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~ 296 (406)
+..+ -|+-+..+-..+.... +...|.--... -.......++...+..-.+.||...+..+-.
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1111 1444444433333221 11112111100 0111222336667899999999999999999
Q ss_pred hcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHHHhcCCcceeecCCCCc-ccE--E-EECHHHHHHHHH
Q 038234 297 CFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYLTARSFFQEFHKGSDDI-ITE--C-KMHDIVHDFAQF 372 (406)
Q Consensus 297 la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~-~~~--~-~mHdlv~~~~~~ 372 (406)
.|++-.. |+-+.|...+-. .....+...++.|....++-.++....+. +.. | ..|+++++.+..
T Consensus 317 AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 317 AACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 9998655 666667666632 33445555566665555543221111111 111 2 458888877754
No 16
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.58 E-value=6.5e-08 Score=89.40 Aligned_cols=127 Identities=14% Similarity=0.265 Sum_probs=83.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh--ccCcceeEEeeCCCCcCc
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISES--IEGKKYLVVLDDVWTDDY 176 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~ 176 (406)
......+.+||++|+||||||+.+.+..+..-.. +..+........+...+.+.-++. +.++|.+|++|.|+..+.
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~Syr--fvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYR--FVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCceE--EEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 4557888999999999999999998765432100 011122222333444444444433 467899999999977654
Q ss_pred cCcchhhhccCCCCCCcEEEE--ecCChH---HHHHhccCCccccCCCChHHHHHhhhh
Q 038234 177 TKWEPFQRCSANGQCGNNILV--TTHKKT---VARMMESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 177 ~~~~~l~~~l~~~~~gs~Iiv--TtR~~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
.+-+. .||.-.+|+.++| ||.++. .+..+....++.|++|+.++-..++.+
T Consensus 237 sQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 237 SQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 44443 4566666877765 777764 233345578999999999998888876
No 17
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=3.4e-08 Score=80.77 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=70.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh--HHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD--FRVAKAIIAALGCETS-NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTK 178 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~ 178 (406)
-+++.|.|+.|+|||||+++++++.. .++. ...+..... ...+.+ +.+.+.+....++.+|+||+++.. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~---yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~--~~ 75 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENIL---YINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYL--PD 75 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccce---eeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhh--cc
Confidence 35899999999999999998886643 1000 000000000 000000 233444444457889999999554 46
Q ss_pred cchhhhccCCCCCCcEEEEecCChHHHHHh------ccCCccccCCCChHH
Q 038234 179 WEPFQRCSANGQCGNNILVTTHKKTVARMM------ESTNFISIKELSTQE 223 (406)
Q Consensus 179 ~~~l~~~l~~~~~gs~IivTtR~~~v~~~~------~~~~~~~l~~L~~~~ 223 (406)
|......+-+..+..+|++|+........- +....+++.||+-.|
T Consensus 76 ~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 WEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 776655555555667999999987666431 124567888888766
No 18
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.54 E-value=9.4e-08 Score=83.19 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=31.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|+||+++++++...|.... ....+.+.|+|.+|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995221 4557899999999999999998776654
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.4e-05 Score=74.25 Aligned_cols=266 Identities=14% Similarity=0.101 Sum_probs=144.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------------HHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------------RVAKAII 135 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~~~i~ 135 (406)
..+.+|+++++++...|...-. +..+.-+.|+|.+|+|||+.++.+.+.... +++..++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 3488999999999988765443 222334899999999999999999886543 6778888
Q ss_pred HHhcCCCCCCCCHHHHHHHHHhhcc--CcceeEEeeCCCCcCccCcchhhhccCCCCC-CcE--EEEecCChHHHHHhcc
Q 038234 136 AALGCETSNLGSLQSLVRCISESIE--GKKYLVVLDDVWTDDYTKWEPFQRCSANGQC-GNN--ILVTTHKKTVARMMES 210 (406)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~--IivTtR~~~v~~~~~~ 210 (406)
..++.....-....+..+.+.+.+. ++.+++|||++..-....-+.+-..+..... .++ ||..+-+......+.+
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 8887444334555666666666654 5889999999943221111222222222111 333 3444444433333321
Q ss_pred -------CCccccCCCChHHHHHhhhhhc---cccch------hHHHHHHhhhh----------cchhhHHhhhhh--cc
Q 038234 211 -------TNFISIKELSTQECWSLFKQES---SAKPC------LLLQKLLGVSC----------ALKELEMSGKNS--LD 262 (406)
Q Consensus 211 -------~~~~~l~~L~~~~a~~Lf~~~~---i~~~c------PLai~~~g~~L----------~~~~~~~~w~~~--~~ 262 (406)
...+...|-+.+|-..++..++ +...+ |++....|..= +......+|... ..
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVS 254 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcC
Confidence 2336788889999888888877 22222 33333322211 100001111111 11
Q ss_pred chhhhhhhhhhhHHHHHHhccccCChhhhhHHhhhcccCCCCccCHHHHHH--HHHHCCCcccccCCCHHHHHHHHHHHH
Q 038234 263 SELWQLQELEKDLFSLLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIK--LWIAQSFIEAKENKEMEIIDEEYFDYL 340 (406)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~--~W~aeg~i~~~~~~~~e~~~~~~l~~L 340 (406)
...-.. ....--...+.-....||.+.|-.+.....-- ..+....+-. .++.+.+ .. .+..-.+++++|
T Consensus 255 ~~~v~~-a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~-----~~-~~~~~~~ii~~L 325 (366)
T COG1474 255 EDHVRE-AQEEIERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERL-----RT-SQRRFSDIISEL 325 (366)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhh-----Cc-hHHHHHHHHHHH
Confidence 100000 01111123344457888888776555443322 2244443333 2333322 11 334555778999
Q ss_pred HhcCCcceeec
Q 038234 341 TARSFFQEFHK 351 (406)
Q Consensus 341 ~~~sll~~~~~ 351 (406)
...+++.....
T Consensus 326 ~~lgiv~~~~~ 336 (366)
T COG1474 326 EGLGIVSASLI 336 (366)
T ss_pred HhcCeEEeeec
Confidence 99999975443
No 20
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=1.7e-07 Score=97.40 Aligned_cols=143 Identities=21% Similarity=0.332 Sum_probs=83.0
Q ss_pred CceecchhhHH---HHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHH
Q 038234 75 SEICGRDYKKN---ELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSL 151 (406)
Q Consensus 75 ~~~vGR~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 151 (406)
.+++|.+..+. .+.+.+.. .....+.++|++|+||||||+.+++.....+. .+........+....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~-----~lna~~~~i~dir~~ 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFS-----SLNAVLAGVKDLRAE 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcce-----eehhhhhhhHHHHHH
Confidence 45889887764 45555542 33556789999999999999999876532211 011000111122222
Q ss_pred HHHHHhhc--cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE--ecCChH--HHH-HhccCCccccCCCChHHH
Q 038234 152 VRCISESI--EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV--TTHKKT--VAR-MMESTNFISIKELSTQEC 224 (406)
Q Consensus 152 ~~~l~~~l--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~--v~~-~~~~~~~~~l~~L~~~~a 224 (406)
.....+.+ .+++.+|||||++..+....+.+...+. .|+.+++ ||.+.. +.. ......++.+.+|+.++.
T Consensus 97 i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi 173 (725)
T PRK13341 97 VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDL 173 (725)
T ss_pred HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence 23332222 2467799999997655444555544333 3555555 344431 211 122356899999999998
Q ss_pred HHhhhhh
Q 038234 225 WSLFKQE 231 (406)
Q Consensus 225 ~~Lf~~~ 231 (406)
..++.+.
T Consensus 174 ~~IL~~~ 180 (725)
T PRK13341 174 HQLLKRA 180 (725)
T ss_pred HHHHHHH
Confidence 8887653
No 21
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=8.9e-06 Score=84.10 Aligned_cols=273 Identities=11% Similarity=0.036 Sum_probs=138.7
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------------H
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------------R 129 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~ 129 (406)
++.+.||++++++|...|...-. +..+..++-|+|++|.|||++++.|.+.... .
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35788999999999988865321 1233467789999999999999998654311 4
Q ss_pred HHHHHHHHhcCCCCC-CCCHHHHHHHHHhhc-c--CcceeEEeeCCCCcCccCcchhhhccCC-CCCCcEEEE--ecCCh
Q 038234 130 VAKAIIAALGCETSN-LGSLQSLVRCISESI-E--GKKYLVVLDDVWTDDYTKWEPFQRCSAN-GQCGNNILV--TTHKK 202 (406)
Q Consensus 130 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l-~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~Iiv--TtR~~ 202 (406)
++..|+.++....+. ..........+...+ . +...+||||++..-....-+.|...+.+ ...+++|++ +|.+-
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 566677777443322 222333444444433 2 2345899999953221111122222211 123444443 33321
Q ss_pred HHH----HHhcc---CCccccCCCChHHHHHhhhhhc-cccc-h-hHHHHHHhhhhcchh-hHHhhhhhccchh-----h
Q 038234 203 TVA----RMMES---TNFISIKELSTQECWSLFKQES-SAKP-C-LLLQKLLGVSCALKE-LEMSGKNSLDSEL-----W 266 (406)
Q Consensus 203 ~v~----~~~~~---~~~~~l~~L~~~~a~~Lf~~~~-i~~~-c-PLai~~~g~~L~~~~-~~~~w~~~~~~~~-----~ 266 (406)
... ..+.. ...+...|.+.++-..++..++ .+.. + +=|+..+|...+... +...-.+++.... .
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 111 11111 2346779999999999999877 2222 2 555555554333211 1111111111000 0
Q ss_pred hh--hh----hhhhHHHHHHhccccCChhhhhHHhhhcccCC---CCccCHHHHHHHH--HHCCCcc--cccCCCHHHHH
Q 038234 267 QL--QE----LEKDLFSLLLLNYYDLPYRIKQCFRYCFISPK---DSCIWKEDLIKLW--IAQSFIE--AKENKEMEIID 333 (406)
Q Consensus 267 ~~--~~----~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp~---~~~i~~~~Li~~W--~aeg~i~--~~~~~~~e~~~ 333 (406)
.. .. ...--...+.-....||.+.|-.++.+...-. ...++...+.... +++..-. +....+ + ..
T Consensus 993 kVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plT-q-RV 1070 (1164)
T PTZ00112 993 KIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNN-E-LF 1070 (1164)
T ss_pred ccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcH-H-HH
Confidence 00 00 00111122344556788888776664443212 2235555544432 2331100 111112 2 66
Q ss_pred HHHHHHHHhcCCccee
Q 038234 334 EEYFDYLTARSFFQEF 349 (406)
Q Consensus 334 ~~~l~~L~~~sll~~~ 349 (406)
.+++.+|...|+|-..
T Consensus 1071 ~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1071 KIMLDKLVKMGILLIR 1086 (1164)
T ss_pred HHHHHHHHhcCeEEec
Confidence 7889999999998643
No 22
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=1.6e-06 Score=87.22 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=87.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|.+..++.+.+|+..... ....+.+.|+|++|+||||+|+.+++.....+ +.....+....+.+...
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~~~~-------ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYGWEV-------IELNASDQRTADVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCE-------EEEcccccccHHHHHHH
Confidence 4689999999999999875421 23367899999999999999999988764210 00000111111222222
Q ss_pred HHhh-----cc-CcceeEEeeCCCCcCc----cCcchhhhccCCCCCCcEEEEecCCh-HHHH-Hh-ccCCccccCCCCh
Q 038234 155 ISES-----IE-GKKYLVVLDDVWTDDY----TKWEPFQRCSANGQCGNNILVTTHKK-TVAR-MM-ESTNFISIKELST 221 (406)
Q Consensus 155 l~~~-----l~-~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~-~~-~~~~~~~l~~L~~ 221 (406)
+... +. .++-+||||+++.... .....+...+.. . +..||+|+.+. .... .+ .....+.+.+++.
T Consensus 85 i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-~-~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 85 AGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-A-KQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred HHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-C-CCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 2111 12 3678999999965332 123445444442 2 33455555432 1111 11 2356789999999
Q ss_pred HHHHHhhhhhc
Q 038234 222 QECWSLFKQES 232 (406)
Q Consensus 222 ~~a~~Lf~~~~ 232 (406)
++....+.+.+
T Consensus 163 ~~i~~~L~~i~ 173 (482)
T PRK04195 163 RSIVPVLKRIC 173 (482)
T ss_pred HHHHHHHHHHH
Confidence 99888877755
No 23
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=2.6e-07 Score=83.53 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=70.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcC-ccCcc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDD-YTKWE 180 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~-~~~~~ 180 (406)
.+.+.|+|++|+|||+|++++++....+.....+... ...+.....+.+.+. +.-+|+|||+|... ...|.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~~-~~dlLilDDi~~~~~~~~~~ 110 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-------SKSQYFSPAVLENLE-QQDLVCLDDLQAVIGNEEWE 110 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-------HHhhhhhHHHHhhcc-cCCEEEEeChhhhcCChHHH
Confidence 3568999999999999999998763210000000000 000011111122222 33599999998642 23454
Q ss_pred h-hhhccCCC-CCCcEEE-EecCC---------hHHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 181 P-FQRCSANG-QCGNNIL-VTTHK---------KTVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 181 ~-l~~~l~~~-~~gs~Ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. +...+... ..|..+| +|+.. +.+...+.....+++++++.++.++++++.+
T Consensus 111 ~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 111 LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 2 33333221 2344554 55544 4666666667899999999999999998765
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=7.8e-06 Score=82.67 Aligned_cols=153 Identities=12% Similarity=0.188 Sum_probs=97.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------------HHHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------------RVAKAIIAA 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------~~~~~i~~~ 137 (406)
.++||-+..++.|.+.+... .-.+.+.++|..|+||||+|+.+.+.... .....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 46899999999999999753 33567789999999999999887654321 111111100
Q ss_pred h-----cCCCCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHH
Q 038234 138 L-----GCETSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARM 207 (406)
Q Consensus 138 l-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~ 207 (406)
- ..+.......+++.+.+.+. ..++.-++|||+++..+...++.|...+-.-..++.+|+ ||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 0 00001112334444333332 245667999999987777777787777765445556554 5544555443
Q ss_pred h-ccCCccccCCCChHHHHHhhhhhc
Q 038234 208 M-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 ~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+ +....+.+..++.++..+.+.+.+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHH
Confidence 3 336789999999999888877644
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=3e-06 Score=86.74 Aligned_cols=153 Identities=10% Similarity=0.175 Sum_probs=97.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHh----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAAL---- 138 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l---- 138 (406)
.++||.+..++.|.+++... .-.+.+.++|..|+||||+|+.+.+.... .....+...-
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 46899999999999998743 33556789999999999999877764321 1111111100
Q ss_pred -cCCCCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHH-hccC
Q 038234 139 -GCETSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARM-MEST 211 (406)
Q Consensus 139 -~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~ 211 (406)
..+.......+++...+... ..++.-++|||+++..+...++.+...+-......++|++|.+. .+... .+..
T Consensus 91 iEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 91 VEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 00001112233333333322 23455689999998777667888877776655577877777764 33322 2336
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+.+.+++.++..+.+.+..
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHH
Confidence 789999999999988887754
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=8.5e-07 Score=73.48 Aligned_cols=43 Identities=30% Similarity=0.341 Sum_probs=35.3
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 78 CGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 78 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|++..+..+...+... ..+.+.|+|.+|+|||+|++.+++..
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 37788888888888642 35578899999999999999998764
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=6.3e-07 Score=73.33 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=64.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh----------H------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD----------F------------RVAKAIIAALGCETSNLGSLQSLVRCISESI 159 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~----------~------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 159 (406)
.+.+.|+|.+|+|||+++..+.+... + .+...++..++.......+...+...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 56889999999999999998887531 1 7788888888877666566777777777777
Q ss_pred cCcc-eeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCC
Q 038234 160 EGKK-YLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHK 201 (406)
Q Consensus 160 ~~kr-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~ 201 (406)
...+ .+||+|+++.- +...++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999554 3233333433222 556677766553
No 28
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=3.6e-06 Score=80.78 Aligned_cols=154 Identities=12% Similarity=0.167 Sum_probs=96.0
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhc
Q 038234 71 FIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALG 139 (406)
Q Consensus 71 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~ 139 (406)
+.+.++|+||+.++..|...|.... ....+++.|+|++|+|||||++.+...... +++..++..++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALG 334 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALG 334 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcC
Confidence 4556789999999999999887543 233569999999999999999888866543 88899999998
Q ss_pred CCCCCC--CCHHHHHHHHHhh-cc-CcceeEEeeCCCCcCccCcchh---hhccCCCCCCcEEEEecCChHHHHHhc---
Q 038234 140 CETSNL--GSLQSLVRCISES-IE-GKKYLVVLDDVWTDDYTKWEPF---QRCSANGQCGNNILVTTHKKTVARMME--- 209 (406)
Q Consensus 140 ~~~~~~--~~~~~~~~~l~~~-l~-~kr~LlVlDdvw~~~~~~~~~l---~~~l~~~~~gs~IivTtR~~~v~~~~~--- 209 (406)
...... +-.+.+.+.+.+. .. |++.+||+-=- +- .++... .-.|.+...-|.|++---.+.+....-
T Consensus 335 V~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg--~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 335 VPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EG--SSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CC--CcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCc
Confidence 632221 1123333333332 12 67777777422 11 111111 012233344567777655544332211
Q ss_pred cCCccccCCCChHHHHHhhhh
Q 038234 210 STNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
....|-+.+++.++|...-.+
T Consensus 412 rldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred cceeEecCCCCHHHHHHHHhh
Confidence 256788899999998776555
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=8.9e-07 Score=84.21 Aligned_cols=150 Identities=14% Similarity=0.117 Sum_probs=87.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|.+..+..|.+++... ....+.++|++|+||||+|..+++.............+. ..+....+.+...
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln--~sd~~~~~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN--ASDDRGIDVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec--ccccccHHHHHHH
Confidence 45789888888888777532 234477999999999999998876531100000000111 1111122223323
Q ss_pred HHhhc-------cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccCCccccCCCChHHHH
Q 038234 155 ISESI-------EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ESTNFISIKELSTQECW 225 (406)
Q Consensus 155 l~~~l-------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~a~ 225 (406)
++... .++.-++|||++........+.+...+......+++|+++.. ..+...+ .....+++.+++.++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 22211 245679999999766544445565555444456677766644 2222211 22467899999999988
Q ss_pred Hhhhhhc
Q 038234 226 SLFKQES 232 (406)
Q Consensus 226 ~Lf~~~~ 232 (406)
..+...+
T Consensus 165 ~~L~~i~ 171 (319)
T PLN03025 165 GRLMKVV 171 (319)
T ss_pred HHHHHHH
Confidence 8887755
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.4e-06 Score=81.65 Aligned_cols=153 Identities=12% Similarity=0.188 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+++.... .....+......+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 46889999999999888743 23567899999999999999988765321 1111111111000
Q ss_pred ----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccC
Q 038234 142 ----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-EST 211 (406)
Q Consensus 142 ----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~ 211 (406)
.......+++...+... ..+++-++|+|++...+...++.+...+........+|++|.+ ..+...+ +..
T Consensus 91 ~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc 170 (363)
T PRK14961 91 IEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRC 170 (363)
T ss_pred EEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhc
Confidence 00112233322222211 2345669999999766655566777777655556667766654 3343332 335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHH
Confidence 788999999999888777644
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.34 E-value=1.3e-06 Score=83.69 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=85.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCE 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~ 141 (406)
..++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+.... ++.......+...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 45889999999998888642 2345789999999999999887664321 1100000000000
Q ss_pred CC-----------CCCCHHHHHHHHHh---h--ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HH
Q 038234 142 TS-----------NLGSLQSLVRCISE---S--IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TV 204 (406)
Q Consensus 142 ~~-----------~~~~~~~~~~~l~~---~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v 204 (406)
.. .....+.+...++. . +.+.+-+||+||+..........+...+......+++|+|+.+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 00 00011111111111 1 12345589999995443333344555554444456777776543 22
Q ss_pred HHHh-ccCCccccCCCChHHHHHhhhhhc
Q 038234 205 ARMM-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 205 ~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+ .....+.+.+++.++...++.+.+
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 2222 224578889999999888887754
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=3.7e-06 Score=85.11 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=97.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..++.|.+++... .-.+.+.++|+.|+||||+|+.+++.... ...+.+...-..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 46899999999999999753 33568899999999999999988765321 1111111000000
Q ss_pred ----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHH-HHhccC
Q 038234 142 ----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVA-RMMEST 211 (406)
Q Consensus 142 ----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~-~~~~~~ 211 (406)
.......+++...+... ..++.-++|+|+++..+....+.+...+.....+..+|++|.+. .+. ......
T Consensus 90 iEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRC 169 (702)
T PRK14960 90 IEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRC 169 (702)
T ss_pred EEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhh
Confidence 01112333333322221 23566799999997766566677777776555566777776653 232 222446
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 170 q~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred heeeccCCCHHHHHHHHHHHH
Confidence 789999999999888877654
No 33
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.32 E-value=2.7e-06 Score=76.67 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHH---HHHH
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLV---RCIS 156 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~ 156 (406)
....++.+.+++.. .....+.|+|++|+|||+||+.+++..... +.. .-..+...+. ..+.
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~~---------~~~-~~~i~~~~~~~~~~~~~ 85 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEER---------GKS-AIYLPLAELAQADPEVL 85 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHhc---------CCc-EEEEeHHHHHHhHHHHH
Confidence 34466667766542 335688999999999999999987653210 000 0000001110 1111
Q ss_pred hhccCcceeEEeeCCCCcCcc-Cc-chhhhccCC-CCCCcEEEEecCChH---------HHHHhccCCccccCCCChHHH
Q 038234 157 ESIEGKKYLVVLDDVWTDDYT-KW-EPFQRCSAN-GQCGNNILVTTHKKT---------VARMMESTNFISIKELSTQEC 224 (406)
Q Consensus 157 ~~l~~kr~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~a 224 (406)
..+.+ .-+|||||++.-... .| ..+...+.. ...+..+|+||+... +...+.....+++.+++.++.
T Consensus 86 ~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~ 164 (226)
T TIGR03420 86 EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEK 164 (226)
T ss_pred hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHH
Confidence 22222 348999999654322 22 234433322 122447888887532 222222346789999999888
Q ss_pred HHhhhhh
Q 038234 225 WSLFKQE 231 (406)
Q Consensus 225 ~~Lf~~~ 231 (406)
..++...
T Consensus 165 ~~~l~~~ 171 (226)
T TIGR03420 165 IAALQSR 171 (226)
T ss_pred HHHHHHH
Confidence 8877653
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.31 E-value=4.5e-07 Score=87.88 Aligned_cols=156 Identities=11% Similarity=0.104 Sum_probs=84.9
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|+++.++++.+.+...... +-...+-+.++|++|+|||+||+++++.....+.......+...... ..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g-~~ 200 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIG-EG 200 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhh-HH
Confidence 46789999999998877432110 11335668999999999999999998866532111111111000000 01
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCc-----------c---CcchhhhccCC--CCCCcEEEEecCChHHHH-Hh--
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDY-----------T---KWEPFQRCSAN--GQCGNNILVTTHKKTVAR-MM-- 208 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~---~~~~l~~~l~~--~~~gs~IivTtR~~~v~~-~~-- 208 (406)
...+...+...-...+.+|+||+++.-.. . .+..+...+.. ...+..||.||....... .+
T Consensus 201 ~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r 280 (364)
T TIGR01242 201 ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLR 280 (364)
T ss_pred HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcC
Confidence 11122222222235678999999854210 0 01112111221 123567888887543211 11
Q ss_pred --ccCCccccCCCChHHHHHhhhhh
Q 038234 209 --ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 209 --~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.-...+.+...+.++..++|...
T Consensus 281 ~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 281 PGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred cccCceEEEeCCcCHHHHHHHHHHH
Confidence 12457889999999998888764
No 35
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=5.9e-06 Score=82.58 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=97.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------------HHHHHHHHHh
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------------RVAKAIIAAL 138 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------~~~~~i~~~l 138 (406)
.+++|-+..+..|...+... .-.+.+.++|+.|+||||+|+.+++.... .....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 35789999888888877643 33567899999999999999998765321 0111111100
Q ss_pred cCC-----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEE-EecCChHHHHHh
Q 038234 139 GCE-----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNIL-VTTHKKTVARMM 208 (406)
Q Consensus 139 ~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~~~~ 208 (406)
... .......+++...+... +.+++-++|+|+++..+...++.+...+......+.+| +||+.+.+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000 00112333333333222 34677799999998776667788877776655566655 455555655544
Q ss_pred c-cCCccccCCCChHHHHHhhhhhc
Q 038234 209 E-STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 209 ~-~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. ....+++.+++.++....+.+.+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHH
Confidence 3 35678999999999988887655
No 36
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=7.5e-06 Score=83.62 Aligned_cols=153 Identities=12% Similarity=0.210 Sum_probs=92.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHH-----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAA----- 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~----- 137 (406)
.+++|.+..+..|.+++... .-.+.+.++|..|+||||+|+.+.+.... .....+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 46899999999999998753 33567899999999999999988764321 111111100
Q ss_pred hcCCCCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHH-hccC
Q 038234 138 LGCETSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARM-MEST 211 (406)
Q Consensus 138 l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~ 211 (406)
+..........+.+...+... ..+++-++|||++...+....+.+...+......+++|++|.+. .+... .+..
T Consensus 91 lEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 91 LEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred EEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH
Confidence 000001112233333332221 23566799999996555444555666665444456677666543 22222 2335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+.+.+++.++....+.+.+
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il 191 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVL 191 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHH
Confidence 678888999999888887655
No 37
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=1.7e-06 Score=82.18 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=86.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|++..++.+.+++... ..+.+.++|.+|+||||+|+.+++.............+.. ......+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~--~~~~~~~~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA--SDERGIDVIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc--ccccchHHHHHH
Confidence 45889999999999988643 2335799999999999999988765311000000000100 011111212222
Q ss_pred HHhh-----cc-CcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccCCccccCCCChHHHHH
Q 038234 155 ISES-----IE-GKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MESTNFISIKELSTQECWS 226 (406)
Q Consensus 155 l~~~-----l~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~ 226 (406)
+.+. .. ..+-++++|++..........+...+......+.+|+++.. ..+... ......+++.+++.++...
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHH
Confidence 2222 11 34568999998544333344565555544455677776643 222221 1224568999999999888
Q ss_pred hhhhhc
Q 038234 227 LFKQES 232 (406)
Q Consensus 227 Lf~~~~ 232 (406)
.+...+
T Consensus 169 ~l~~~~ 174 (319)
T PRK00440 169 RLRYIA 174 (319)
T ss_pred HHHHHH
Confidence 777655
No 38
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=4e-06 Score=75.40 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=68.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcch
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEP 181 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~ 181 (406)
.+.+.|+|.+|+|||+|++.+++.....+. +.......+...+.+ -+|++||+.... ..-..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~--~~l~iDDi~~~~-~~~~~ 105 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI---------------HPNEIGSDAANAAAE--GPVLIEDIDAGG-FDETG 105 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe---------------cHHHcchHHHHhhhc--CeEEEECCCCCC-CCHHH
Confidence 456899999999999999988765432100 000111111111111 378899995321 11122
Q ss_pred hhhccCC-CCCCcEEEEecCC---------hHHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 182 FQRCSAN-GQCGNNILVTTHK---------KTVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 182 l~~~l~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+...+.. ...|..||+|++. +.+...+....++++++++.++-.+++++.+
T Consensus 106 lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 106 LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred HHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 3332321 1336678888873 3455555667899999999999999988755
No 39
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1e-05 Score=84.50 Aligned_cols=153 Identities=12% Similarity=0.196 Sum_probs=97.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH------------HHHHHHHH-----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR------------VAKAIIAA----- 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------~~~~i~~~----- 137 (406)
.+++|.+..+..|.+++... .-.+.+.++|+.|+||||+|+.+++..... ....+...
T Consensus 16 ddIIGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 46899999999999988743 235566899999999999999988764321 00111110
Q ss_pred --hcCC-CCCCCCHHHHHHHHHh-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccC
Q 038234 138 --LGCE-TSNLGSLQSLVRCISE-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MEST 211 (406)
Q Consensus 138 --l~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~ 211 (406)
+... ....+...++...+.. ...+++-++|||+++..+....+.|...+-......++|++|.+ ..+... ....
T Consensus 91 iEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhh
Confidence 0000 0111122333333221 12467779999999877767777777777655556666655544 444433 2346
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..|.+.+|+.++....+.+.+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHH
Confidence 789999999999988887744
No 40
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-06 Score=87.47 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=93.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCE-- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~-- 141 (406)
.+++|.+..++.|.+++... .-.+.+.++|++|+||||+|+.+++.... .-...+.......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 45899998888888888753 23567799999999999999888765321 0000110000000
Q ss_pred ---CCCCCCHHH---HHHHHHh-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccCC
Q 038234 142 ---TSNLGSLQS---LVRCISE-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ESTN 212 (406)
Q Consensus 142 ---~~~~~~~~~---~~~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~ 212 (406)
.......+. +...+.. -..+++-++|+|+++......++.+...+......+.+|++|.. ..+...+ ....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 001112222 2222222 12356679999999766655677777777655455555555543 3333332 2356
Q ss_pred ccccCCCChHHHHHhhhhhc
Q 038234 213 FISIKELSTQECWSLFKQES 232 (406)
Q Consensus 213 ~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+++.+++.++....+.+.+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred EEEecCCCHHHHHHHHHHHH
Confidence 89999999999999887755
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-06 Score=83.96 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~ 142 (406)
.+++|.+..+..|..++... .-.+.+.++|+.|+||||+|+.+++.... .....+......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 45899998999999888753 22456899999999999999998775432 11111111111111
Q ss_pred C-----C---CCCHHHHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEE-EecCChHHHHHh-ccC
Q 038234 143 S-----N---LGSLQSLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNIL-VTTHKKTVARMM-EST 211 (406)
Q Consensus 143 ~-----~---~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~~~~-~~~ 211 (406)
. . .++..++...+... ..++.-++|+|+++..+...++.+...+........+| .||....+...+ ...
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0 1 11222233332221 24566799999998777667777777775544455555 454444443333 335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..|.+.+++.++....+.+.+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred heeeecCCCHHHHHHHHHHHH
Confidence 779999999998888777654
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-06 Score=86.41 Aligned_cols=153 Identities=15% Similarity=0.193 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHH-----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAA----- 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~----- 137 (406)
.+++|.+..+..|...+... ...+.+.++|+.|+||||+|+.+++.... .....+...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 45889999999999988743 33566889999999999999988763211 001111000
Q ss_pred --hcC-CCCCCCCHHHHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHH-hccC
Q 038234 138 --LGC-ETSNLGSLQSLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARM-MEST 211 (406)
Q Consensus 138 --l~~-~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~-~~~~ 211 (406)
+.. .....++...+...+... ..+++-++|+|++...+...++.+...+-.....+.+|+ ||....+... ....
T Consensus 91 ieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 91 IEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred EEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHhe
Confidence 000 000111223333333322 346677999999977666667777777766555666654 5444444433 3346
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHH
Confidence 889999999999877776643
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=1.1e-05 Score=83.17 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=95.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------H-------
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------R------- 129 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~------- 129 (406)
+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.... .
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4689999999988887743 23457999999999999999988643310 0
Q ss_pred HHHHHH---------------HHhcCCC----------------CCCC-CHHHHHHHHHhhccCcceeEEeeCCCCcCcc
Q 038234 130 VAKAII---------------AALGCET----------------SNLG-SLQSLVRCISESIEGKKYLVVLDDVWTDDYT 177 (406)
Q Consensus 130 ~~~~i~---------------~~l~~~~----------------~~~~-~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~ 177 (406)
+...++ ...+... ++.. -....+..+.+.+..++++++.|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 000000 0000000 0000 1123566777888888888888888777767
Q ss_pred CcchhhhccCCCCCCcEEEE--ecCChHH-HHHh-ccCCccccCCCChHHHHHhhhhhc
Q 038234 178 KWEPFQRCSANGQCGNNILV--TTHKKTV-ARMM-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 178 ~~~~l~~~l~~~~~gs~Iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.|..+...+....+...+++ ||++... ...+ .....+.+.+++.+|.+.++.+.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 78887776666555555555 5664321 1111 123467889999999999998865
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=5.8e-06 Score=84.55 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=96.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGC-- 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~-- 140 (406)
.++||-+.-+..|.+.+... .-.+.+.++|..|+||||+|+.+++.... .....+...-..
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 46899999999999888743 23456789999999999999988765432 111111100000
Q ss_pred ---CCCCCCCHHHHH---HHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccC
Q 038234 141 ---ETSNLGSLQSLV---RCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MEST 211 (406)
Q Consensus 141 ---~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~ 211 (406)
........+++. +.+... ..+++-++|||+++..+....+.|...+-.-....++|++|.+ ..+... ....
T Consensus 91 ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 91 IEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred eeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhh
Confidence 000012233333 222211 3466779999999877766777777777655556666555544 444433 2346
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+.+.+++.++....+.+..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHH
Confidence 889999999999988877643
No 45
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=2.7e-06 Score=80.75 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=97.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHH----HHHHHHHhcCCCCCCCCHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRV----AKAIIAALGCETSNLGSLQS 150 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~~~i~~~l~~~~~~~~~~~~ 150 (406)
.+++|-+..++.+.+++... .-.+...++|+.|+||||+|+.+++..-... ..++. .+..........++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~-~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII-EFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE-EeccccCCCCCHHH
Confidence 35789888899999998643 3356789999999999999998876321000 00000 00000011123344
Q ss_pred HHHHHH---h-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccccCCCChHHH
Q 038234 151 LVRCIS---E-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFISIKELSTQEC 224 (406)
Q Consensus 151 ~~~~l~---~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~~a 224 (406)
+...+. . -..+++-++|+|++...+...++.+...+.....++.+|++|.+.+ +... .+....+.+.+++.++.
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 333332 1 2345667888888877777788889999987778889988887653 2222 23367899999999998
Q ss_pred HHhhhhh
Q 038234 225 WSLFKQE 231 (406)
Q Consensus 225 ~~Lf~~~ 231 (406)
...+.+.
T Consensus 158 ~~~l~~~ 164 (313)
T PRK05564 158 EKFISYK 164 (313)
T ss_pred HHHHHHH
Confidence 8777654
No 46
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.1e-06 Score=85.38 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=88.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGC-- 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~-- 140 (406)
.+++|.+..+..|...+... .-.+.+.++|++|+||||+|+.+++.... .....+......
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988888887777642 23466899999999999999988765321 011111000000
Q ss_pred ---CCCCCCCHHHHHHHHHhh-----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-cc
Q 038234 141 ---ETSNLGSLQSLVRCISES-----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ES 210 (406)
Q Consensus 141 ---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~ 210 (406)
........+.+. .+.+. ..+++-++|+|+++.......+.+...+........+|++|.+ ..+...+ ..
T Consensus 89 ~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 000112233322 22222 2356679999999655444455566666544444444444443 3443333 33
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+.+.+++.++....+.+.+
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHH
Confidence 6788999999999888777654
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5.7e-06 Score=84.36 Aligned_cols=153 Identities=12% Similarity=0.206 Sum_probs=94.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------------HHHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------------RVAKAIIAA 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------~~~~~i~~~ 137 (406)
.++||-+.-+..|.+++... .-.+.+.++|..|+||||+|+.+.+.... .....+...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 45899888888888888753 33567799999999999999888543210 111111100
Q ss_pred hcCC-----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHH-
Q 038234 138 LGCE-----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVAR- 206 (406)
Q Consensus 138 l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~- 206 (406)
-..+ .......+++...+... ..++.-++|||+++..+...++.+...+..-...+++|++|.+ ..+..
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 00112233333333221 2345568999999877777777777777665556666655543 44432
Q ss_pred HhccCCccccCCCChHHHHHhhhhhc
Q 038234 207 MMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 207 ~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.......+++.+++.++....+.+.+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHH
Confidence 23446889999999999888887654
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.13 E-value=4.8e-06 Score=88.73 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=83.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHHHHHHHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVAKAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~~i~~~l~~~~~~ 144 (406)
..++||+.++.++++.|.... ..-+.++|.+|+|||+||+.+++.... ++..--+..+......
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 468999999999999987542 335569999999999999988875421 0000000001100111
Q ss_pred CCCH-HHHHHHHHhhc-cCcceeEEeeCCCCcCc-----cCcc---hhhhccCCCCCCcEEEEecCChHHHHH-------
Q 038234 145 LGSL-QSLVRCISESI-EGKKYLVVLDDVWTDDY-----TKWE---PFQRCSANGQCGNNILVTTHKKTVARM------- 207 (406)
Q Consensus 145 ~~~~-~~~~~~l~~~l-~~kr~LlVlDdvw~~~~-----~~~~---~l~~~l~~~~~gs~IivTtR~~~v~~~------- 207 (406)
..+. +.+...+.+.- .+++.+|++|+++.-.. ..-+ .+...+.. + .-++|-||...+....
T Consensus 261 ~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G-~l~~IgaTT~~e~~~~~~~d~AL 338 (852)
T TIGR03345 261 KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-G-ELRTIAATTWAEYKKYFEKDPAL 338 (852)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-C-CeEEEEecCHHHHhhhhhccHHH
Confidence 1111 22333333322 25789999999865321 1112 13332222 1 2455555554332211
Q ss_pred hccCCccccCCCChHHHHHhhhh
Q 038234 208 MESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 208 ~~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
......+.+.+++.++...++..
T Consensus 339 ~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 339 TRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred HHhCeEEEeCCCCHHHHHHHHHH
Confidence 12356899999999999999754
No 49
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=1e-05 Score=79.29 Aligned_cols=153 Identities=11% Similarity=0.148 Sum_probs=91.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------------HHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------------RVAKAI 134 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~~~i 134 (406)
.+++|.+.-++.|.+++... .-.+.+.++|+.|+||||+|..+++.... ..-..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 46889888888888888642 23456889999999999999887654311 000001
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHH
Q 038234 135 IAALGCE-----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTV 204 (406)
Q Consensus 135 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v 204 (406)
....... .......+++....... ..+++-++|+|++...+...++.+...+.+..+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 0000000 00111234443322222 23566689999997665556777777776655566665554 44444
Q ss_pred HHHhc-cCCccccCCCChHHHHHhhhhhc
Q 038234 205 ARMME-STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 205 ~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+. ....+++.+++.++....+...+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 43322 24678999999999887776644
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3e-05 Score=77.08 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=95.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~ 142 (406)
.++||.+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.... ..-..+......+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 46899998888888887643 23557899999999999999888752110 11122211111110
Q ss_pred -----CCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHHHHHh-ccC
Q 038234 143 -----SNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTVARMM-EST 211 (406)
Q Consensus 143 -----~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~~-~~~ 211 (406)
......+++...+... ..++.-++|+|+++..+....+.+...+..-.+.+.+|++| ..+.+...+ ...
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc 167 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRC 167 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhh
Confidence 1122333333322221 23566789999996665555667777776655566666554 445555443 346
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred eeeecccccHHHHHHHHHHHH
Confidence 788999999999888877755
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=3.7e-06 Score=88.73 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHHHHHHHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVAKAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~~i~~~l~~~~~~ 144 (406)
+.++||++++.++++.|.... ..-+.++|++|+|||++|+.+++.... ++..--+..+......
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~ 255 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY 255 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc
Confidence 468999999999999887532 334679999999999999988765311 0000000011100001
Q ss_pred CCCHHH-HHHHHHhhccCcceeEEeeCCCCcCc---------cCcchhhhccCCCCCC-cEEEEecCChHHHHH------
Q 038234 145 LGSLQS-LVRCISESIEGKKYLVVLDDVWTDDY---------TKWEPFQRCSANGQCG-NNILVTTHKKTVARM------ 207 (406)
Q Consensus 145 ~~~~~~-~~~~l~~~l~~kr~LlVlDdvw~~~~---------~~~~~l~~~l~~~~~g-s~IivTtR~~~v~~~------ 207 (406)
..+.+. +.+.+.+.-..++.+|++|+++.-.. +.-+.+...+. .| -.+|-+|..++....
T Consensus 256 ~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 256 RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHH
Confidence 112222 22223322235689999999953210 01122333332 23 244444443222111
Q ss_pred -hccCCccccCCCChHHHHHhhhhhc
Q 038234 208 -MESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 -~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...-..+.+.+++.++...++....
T Consensus 333 l~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 333 LSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1224678999999999999988533
No 52
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=5.3e-06 Score=75.27 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc-cCcc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY-TKWE 180 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-~~~~ 180 (406)
...+.|+|++|+|||+|++.+++.....-....+..+. .......++.+.+.+ --+|++||+..... ..|.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~---~~~~~~~~~~~~~~~-----~dlliiDdi~~~~~~~~~~ 116 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD---KRAWFVPEVLEGMEQ-----LSLVCIDNIECIAGDELWE 116 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH---HHhhhhHHHHHHhhh-----CCEEEEeChhhhcCCHHHH
Confidence 45789999999999999998876432100000000000 000001112222211 24899999954321 2343
Q ss_pred h-hhhccCC-CCCC-cEEEEecCCh---------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 181 P-FQRCSAN-GQCG-NNILVTTHKK---------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 181 ~-l~~~l~~-~~~g-s~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. +...+.. ...| .++|+||+.. .+...+....++++.+++.++-.+++.+.+
T Consensus 117 ~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 117 MAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 2 2222211 1123 3788998754 344455567899999999999888877644
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.08 E-value=1.1e-05 Score=76.56 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=84.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|.+...+.+..++... ....++.++|++|+|||++|+.+++.....+. .+.... ...+.+...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~-----~i~~~~---~~~~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL-----FVNGSD---CRIDFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce-----EeccCc---ccHHHHHHH
Confidence 56899999999999988742 33567888999999999999999775421110 011111 112222222
Q ss_pred HHhh-----ccCcceeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCChH-HHHHh-ccCCccccCCCChHHHHH
Q 038234 155 ISES-----IEGKKYLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHKKT-VARMM-ESTNFISIKELSTQECWS 226 (406)
Q Consensus 155 l~~~-----l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~~~~~l~~L~~~~a~~ 226 (406)
+.+. +.+.+-++|+||+... .......+...+.....++.+|+||.... +...+ +....+.+...+.++...
T Consensus 88 l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHH
Confidence 2222 1245568999999544 21222334444444456778888886532 11111 224567777778888776
Q ss_pred hhhh
Q 038234 227 LFKQ 230 (406)
Q Consensus 227 Lf~~ 230 (406)
++..
T Consensus 168 il~~ 171 (316)
T PHA02544 168 MMKQ 171 (316)
T ss_pred HHHH
Confidence 6554
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.07 E-value=5.3e-06 Score=73.02 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=77.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+|||.+.-+..+.-.+..... .++.+..+.+||++|+||||||.-+++.....+. ... .+......++...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~-----~~s--g~~i~k~~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVNFK-----ITS--GPAIEKAGDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT--EE-----EEE--CCC--SCHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCCeE-----ecc--chhhhhHHHHHHH
Confidence 5799998888776554432110 1355778999999999999999999888765331 111 1222334455555
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCC--------CC-----------CCcEEEEecCChHHHHHhcc--CCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSAN--------GQ-----------CGNNILVTTHKKTVARMMES--TNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~--------~~-----------~gs~IivTtR~~~v~~~~~~--~~~ 213 (406)
+... +++-+|++|.++..+...-+.+...+-+ .+ +-+-|=.|||...+..-+.. .-+
T Consensus 96 l~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~ 173 (233)
T PF05496_consen 96 LTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIV 173 (233)
T ss_dssp HHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEE
T ss_pred HHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhccee
Confidence 5443 3456888899976553332323222211 11 12345568887554443332 233
Q ss_pred cccCCCChHHHHHhhhhhc
Q 038234 214 ISIKELSTQECWSLFKQES 232 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+++..+.+|-..++.+.+
T Consensus 174 ~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 174 LRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp EE----THHHHHHHHHHCC
T ss_pred cchhcCCHHHHHHHHHHHH
Confidence 4789999999999888766
No 55
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=1.4e-05 Score=80.63 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=92.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..++.+.+.+... ...+.+.++|+.|+||||+|+.+++.... ...+.+......+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 46889999999999988643 33567889999999999999888664311 1111111111110
Q ss_pred ----CCCCCCHH---HHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHHHHH-hccC
Q 038234 142 ----TSNLGSLQ---SLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTVARM-MEST 211 (406)
Q Consensus 142 ----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~-~~~~ 211 (406)
.......+ .+...+... ..+++-++|+|++...+...++.+...+......+.+|++| ....+... ....
T Consensus 91 ieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRc 170 (605)
T PRK05896 91 VELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRC 170 (605)
T ss_pred EEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhh
Confidence 00112222 233222221 22345579999997665556667777765544455555544 44444433 3346
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+...+
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHH
Confidence 789999999999888777644
No 56
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.06 E-value=2.1e-05 Score=71.71 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=91.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-HHHHHHHHHhcCCCC-C-------C
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-RVAKAIIAALGCETS-N-------L 145 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~~~i~~~l~~~~~-~-------~ 145 (406)
.+++|-+..+.-|.+.+.. ....+...+|++|.|||+-|..+++..-. +....=...+..... + .
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 4688999999999998875 23667889999999999999887665322 111000011111110 0 0
Q ss_pred CCHHHHHHHHHhhccC---cc-eeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccCCccccCCC
Q 038234 146 GSLQSLVRCISESIEG---KK-YLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ESTNFISIKEL 219 (406)
Q Consensus 146 ~~~~~~~~~l~~~l~~---kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L 219 (406)
.+...+..... ...+ ++ -.+|||++.....+.|..+...+.+....++.|+.+.. ..+..-+ ....-+..++|
T Consensus 110 k~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 110 KNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred cCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 11111111111 0111 22 37899999988889999999999887767776554443 3222221 22456788889
Q ss_pred ChHHHHHhhhhhc
Q 038234 220 STQECWSLFKQES 232 (406)
Q Consensus 220 ~~~~a~~Lf~~~~ 232 (406)
..++...-+...+
T Consensus 189 ~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 189 KDEDIVDRLEKIA 201 (346)
T ss_pred chHHHHHHHHHHH
Confidence 8888777777666
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=2.6e-06 Score=83.10 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=83.2
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|+++.++++.+.+...-. -+-...+-|.++|++|+|||++|+++++.....+..-....+...... ..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g-~~ 209 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG-EG 209 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc-ch
Confidence 3567999999998887632110 012446678999999999999999998765431110000011000000 11
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcC-----------ccCcchhhhcc---CC--CCCCcEEEEecCChHHHHH-h-c
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDD-----------YTKWEPFQRCS---AN--GQCGNNILVTTHKKTVARM-M-E 209 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l---~~--~~~gs~IivTtR~~~v~~~-~-~ 209 (406)
...+...+...-...+.+|+|||+..-- ......+...+ .. ...+..||.||........ + .
T Consensus 210 ~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allR 289 (389)
T PRK03992 210 ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILR 289 (389)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcC
Confidence 1112222222223567899999995320 00011122222 11 1234567777765432211 1 1
Q ss_pred ---cCCccccCCCChHHHHHhhhhh
Q 038234 210 ---STNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 210 ---~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
-...+.+.+.+.++-.++|+..
T Consensus 290 pgRfd~~I~v~~P~~~~R~~Il~~~ 314 (389)
T PRK03992 290 PGRFDRIIEVPLPDEEGRLEILKIH 314 (389)
T ss_pred CccCceEEEECCCCHHHHHHHHHHH
Confidence 1456889999988888888753
No 58
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04 E-value=9.6e-06 Score=86.65 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=81.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----HHHH-------HHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----RVAK-------AIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~~-------~i~~~l~~~~~ 143 (406)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++..... ..+. ++..-+.+. .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~-~ 251 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGT-K 251 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccC-C
Confidence 468999999999999997542 334569999999999999888765421 0000 000001111 1
Q ss_pred CCCCHH-HHHHHHHhhccCcceeEEeeCCCCcC-----ccC--c-chhhhccCCCCCCcEEEEecCChHHHHH-------
Q 038234 144 NLGSLQ-SLVRCISESIEGKKYLVVLDDVWTDD-----YTK--W-EPFQRCSANGQCGNNILVTTHKKTVARM------- 207 (406)
Q Consensus 144 ~~~~~~-~~~~~l~~~l~~kr~LlVlDdvw~~~-----~~~--~-~~l~~~l~~~~~gs~IivTtR~~~v~~~------- 207 (406)
...+.+ .+...+.+.-..++.+|++|+++.-- ... . +.+...+.. + .-++|.+|........
T Consensus 252 ~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 252 YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHHHHHHHhcCHHH
Confidence 112222 22333333334578999999994211 001 1 122222221 1 2355655555443221
Q ss_pred hccCCccccCCCChHHHHHhhhh
Q 038234 208 MESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 208 ~~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
......+.+...+.++...++..
T Consensus 330 ~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 330 ERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhcceEEecCCCCHHHHHHHHHH
Confidence 12245678888888888777754
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7e-06 Score=82.48 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=94.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGC-- 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~-- 140 (406)
.++||-+..++.|.+++... .-.+.+.++|+.|+||||+|+.+.+.... .....+...-..
T Consensus 16 ~divGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 45899999999999999753 33556789999999999999888764321 111111110000
Q ss_pred ---CCCCCCCHHHHHHHHHh----hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccC
Q 038234 141 ---ETSNLGSLQSLVRCISE----SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MEST 211 (406)
Q Consensus 141 ---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~ 211 (406)
........+++...+.. -..++.-++|+|+++..+....+.+...+......+++|++|.+ ..+... ....
T Consensus 91 ~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 91 FEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred EEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 00112233333332222 12356668999999776666677777777665556777665544 333322 2335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHH
Confidence 778899999988766555443
No 60
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=2.4e-05 Score=70.11 Aligned_cols=144 Identities=11% Similarity=0.203 Sum_probs=79.5
Q ss_pred ceecc-hhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCC
Q 038234 76 EICGR-DYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCE 141 (406)
Q Consensus 76 ~~vGR-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~ 141 (406)
.++|- .+..-...+.+.... +.....+-|+|..|+|||+|.+++++.... ++...+...+..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~- 85 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD- 85 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT-
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc-
Confidence 34564 333344444454432 234456789999999999999999875321 444445444432
Q ss_pred CCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCcc-Ccch-hhhccCC-CCCCcEEEEecCCh---------HHHHHhc
Q 038234 142 TSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYT-KWEP-FQRCSAN-GQCGNNILVTTHKK---------TVARMME 209 (406)
Q Consensus 142 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-~~~~-l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~ 209 (406)
....++. +.+. .-=+|+|||++.-... .|.. +...+.. ...|.+||+|+... .+...+.
T Consensus 86 ----~~~~~~~----~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 86 ----GEIEEFK----DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp ----TSHHHHH----HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred ----ccchhhh----hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 1122222 2222 2348999999653211 2222 2222221 12366899999643 3445556
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..-++++.+++.++-..++.+.+
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHH
Confidence 67889999999999988888765
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.02 E-value=2.2e-05 Score=71.08 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=67.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhcc--CcceeEEeeCCCCcCc-cCc
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIE--GKKYLVVLDDVWTDDY-TKW 179 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~-~~~ 179 (406)
..+.|+|.+|+|||+|++++++..... +.. ....+..+....+...+. .+.-+|||||+..... ..|
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---------~~~-~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---------GRS-SAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---------CCc-EEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHH
Confidence 459999999999999999987643210 000 000001111111111111 2335999999953321 123
Q ss_pred ch-hhhccCC-CCCCcEEEEecCCh---------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 180 EP-FQRCSAN-GQCGNNILVTTHKK---------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 180 ~~-l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.. +...+.. ..+|..||+|++.. .+...+....++++++++.++-..++.+.+
T Consensus 112 ~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 112 EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 22 2222221 12356799999853 233333446788999999999999888754
No 62
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.01 E-value=4.2e-05 Score=73.89 Aligned_cols=153 Identities=10% Similarity=0.176 Sum_probs=91.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..++.+.+++... ...+.+.++|++|+|||++|+.+.+.... .-...+.......
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 45799999999999988643 33567889999999999999877654211 0001111100000
Q ss_pred ----CCCCCC---HHHHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHHh-ccC
Q 038234 142 ----TSNLGS---LQSLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARMM-EST 211 (406)
Q Consensus 142 ----~~~~~~---~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~ 211 (406)
...... ...+...+... ..+++-++|+|++........+.+...+......+.+|++|.+.. +...+ ...
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 168 (355)
T TIGR02397 89 IEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC 168 (355)
T ss_pred EEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhhe
Confidence 000112 22333333222 335566899999855443445566666655455667666665543 33322 235
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+...+
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 678889999999888887654
No 63
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=7.1e-06 Score=73.16 Aligned_cols=128 Identities=17% Similarity=0.273 Sum_probs=77.8
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHH
Q 038234 71 FIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQS 150 (406)
Q Consensus 71 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 150 (406)
.+.-.+++|.+...+.|++-...-.. ..+..-+.+||..|.|||+|++++.+.+..+- +.-+.....+..++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLGDLPE 96 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhccHHH
Confidence 34446799999998888775443222 34466778899999999999999887654311 1111112223345566
Q ss_pred HHHHHHhhccCcceeEEeeCCCCc-CccCcchhhhccCCC----CCCcEEEEecCChHHHH
Q 038234 151 LVRCISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANG----QCGNNILVTTHKKTVAR 206 (406)
Q Consensus 151 ~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~----~~gs~IivTtR~~~v~~ 206 (406)
+...++. ...||+|++||+--+ +...+..++..|..+ ..+..|..||-.+++..
T Consensus 97 l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 97 LLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred HHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 6666664 467999999998432 223456666666432 22334445555455544
No 64
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=3.1e-05 Score=81.83 Aligned_cols=153 Identities=11% Similarity=0.137 Sum_probs=96.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGC-- 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~-- 140 (406)
.++||.+..++.|..++... .-.+.+.++|..|+||||+|+.+.+.... .....+...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 35899999999999998753 33456889999999999999888765421 111111111000
Q ss_pred -----CCCCCCCHHHHHHHHHh----hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHHHHHh-c
Q 038234 141 -----ETSNLGSLQSLVRCISE----SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTVARMM-E 209 (406)
Q Consensus 141 -----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~~-~ 209 (406)
.......++++.....+ -..++.-++|||+++..+....+.|+..+.+-...+.+|++| ....+...+ .
T Consensus 90 dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 90 DVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred cEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 00011223333332111 134566689999998777777778888887665666666555 444555443 3
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
....|++..++.++....+.+..
T Consensus 170 Rc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 170 RTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred heeEEEeeCCCHHHHHHHHHHHH
Confidence 36789999999999887777643
No 65
>PRK05642 DNA replication initiation factor; Validated
Probab=97.98 E-value=6e-05 Score=68.28 Aligned_cols=120 Identities=20% Similarity=0.269 Sum_probs=66.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHH---HHHHhhccCcceeEEeeCCCCcC-cc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLV---RCISESIEGKKYLVVLDDVWTDD-YT 177 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~~l~~kr~LlVlDdvw~~~-~~ 177 (406)
...+.|+|..|+|||+|++++++..... +.. .-..+.+++. ..+.+.+.+- =+||+||+.... ..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~---------~~~-v~y~~~~~~~~~~~~~~~~~~~~-d~LiiDDi~~~~~~~ 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR---------GEP-AVYLPLAELLDRGPELLDNLEQY-ELVCLDDLDVIAGKA 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC---------CCc-EEEeeHHHHHhhhHHHHHhhhhC-CEEEEechhhhcCCh
Confidence 4678999999999999999887532110 000 0000001111 1122222222 278899995331 12
Q ss_pred Ccch-hhhccCC-CCCCcEEEEecCChH---------HHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 178 KWEP-FQRCSAN-GQCGNNILVTTHKKT---------VARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 178 ~~~~-l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.|.. +...+.. ..+|..+|+|++... +...+....++++++++.++-..++++++
T Consensus 114 ~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 114 DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 4433 3333321 234667888887532 22233345778899999999888877543
No 66
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=2.7e-05 Score=69.44 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=64.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPF 182 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l 182 (406)
+.+.|+|++|+|||+|++.+++.....+.. ..... + +.. ...-+|++||++.... ..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~----------~~~~~-~-------~~~-~~~d~lliDdi~~~~~---~~l 102 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK----------DIFFN-E-------EIL-EKYNAFIIEDIENWQE---PAL 102 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc----------hhhhc-h-------hHH-hcCCEEEEeccccchH---HHH
Confidence 678999999999999999987765321100 00000 0 111 2335789999952210 112
Q ss_pred hhccCC-CCCCcEEEEecCCh-------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 183 QRCSAN-GQCGNNILVTTHKK-------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 183 ~~~l~~-~~~gs~IivTtR~~-------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+.. ...|..||+|++.. .+...+....++++++++.++-..++++.+
T Consensus 103 f~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 103 LHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred HHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 222211 13466899988753 233334446689999999998777777643
No 67
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.97 E-value=1.4e-06 Score=71.11 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=38.4
Q ss_pred EEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccC-cceeEEeeCCCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEG-KKYLVVLDDVWT 173 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~ 173 (406)
|.|+|++|+|||++|+.+++.....+..--...+. ..........+...+.+.-.. ++.+|++||+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-cccccccccccccccccccccccceeeeeccchh
Confidence 57999999999999999988764311000000000 001112233344444443333 389999999954
No 68
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=1.1e-05 Score=81.69 Aligned_cols=153 Identities=12% Similarity=0.178 Sum_probs=91.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhc---
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALG--- 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~--- 139 (406)
.+++|-+.-++.|.+++... .-.+.+.++|+.|+||||+|+.+.+.... .....+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 45889999999999988753 23456789999999999999888654321 00011100000
Q ss_pred --CCCCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccC
Q 038234 140 --CETSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MEST 211 (406)
Q Consensus 140 --~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~ 211 (406)
.........+++...+... ..+++-++|+|++...+....+.+...+......+.+|++|.+ +.+... ....
T Consensus 91 ~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc 170 (527)
T PRK14969 91 IEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170 (527)
T ss_pred eEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHH
Confidence 0001112233333222221 2466779999999766655566677777655556666655544 333322 2235
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 778999999998887666543
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=4.6e-05 Score=78.08 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=93.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------------HHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------------RVAKAI 134 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~~~i 134 (406)
.+++|.+..+..|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.... .....+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 46889998888888888642 23456889999999999999877654311 000001
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHH
Q 038234 135 IAALGCE-----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTV 204 (406)
Q Consensus 135 ~~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v 204 (406)
...-... .......+++...+... ..+++-++|+|+++..+....+.|...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000 00112234444333222 335566899999976655556667777765555555554 5444555
Q ss_pred HHH-hccCCccccCCCChHHHHHhhhhhc
Q 038234 205 ARM-MESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 205 ~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
... ......+++.+++.++....+.+.+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHH
Confidence 443 3347789999999999877776644
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=4e-05 Score=74.48 Aligned_cols=155 Identities=11% Similarity=0.111 Sum_probs=92.5
Q ss_pred ceecchhhHHHHHHHHhcCCCC----CCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcC
Q 038234 76 EICGRDYKKNELLSKLLSDSSD----QQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGC 140 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~ 140 (406)
+++|-+.-++.|.+.+...... +..-.+.+.++|++|+|||++|+.+++..-. ..-..+.....+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5789988899999988754210 0113567889999999999999887653110 111111111111
Q ss_pred CC----C--CCCCHHHHH---HHHHh-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-
Q 038234 141 ET----S--NLGSLQSLV---RCISE-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM- 208 (406)
Q Consensus 141 ~~----~--~~~~~~~~~---~~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~- 208 (406)
+. + .....+++. +.+.. -..+++-++|+|++...+....+.+...+.....++.+|++|.+ ..+...+
T Consensus 86 D~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 86 DVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 00 0 112233322 22221 12355568889999777666666677776555556666666665 3444332
Q ss_pred ccCCccccCCCChHHHHHhhhh
Q 038234 209 ESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 209 ~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
+....+.+.+++.++....+.+
T Consensus 166 SRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 166 SRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred hhCeEEECCCCCHHHHHHHHHH
Confidence 3367899999999999888864
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=9.6e-06 Score=78.77 Aligned_cols=153 Identities=13% Similarity=0.226 Sum_probs=88.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHH----HH-HHHhcCCCCCCCCHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAK----AI-IAALGCETSNLGSLQ 149 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~----~i-~~~l~~~~~~~~~~~ 149 (406)
.+++|.+..++.+.+.+... .-.+.+.++|++|+|||++|+.+.+........ .+ ...+..........+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 45789999999999998743 235688999999999999998886643210000 00 000000001112223
Q ss_pred HHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHHHHH-hccCCccccCCCChHH
Q 038234 150 SLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTVARM-MESTNFISIKELSTQE 223 (406)
Q Consensus 150 ~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~-~~~~~~~~l~~L~~~~ 223 (406)
++...+.+. ..+++-++|+|++.......++.+...+......+.+|++| ....+... ......+++.+++.++
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHH
Confidence 333333221 23556689999985544344556655554434455555544 33333322 2235678999999999
Q ss_pred HHHhhhhhc
Q 038234 224 CWSLFKQES 232 (406)
Q Consensus 224 a~~Lf~~~~ 232 (406)
....+...+
T Consensus 172 l~~~l~~~~ 180 (367)
T PRK14970 172 IKEHLAGIA 180 (367)
T ss_pred HHHHHHHHH
Confidence 888777654
No 72
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=3.5e-05 Score=78.71 Aligned_cols=153 Identities=10% Similarity=0.204 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH-----------------HHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR-----------------VAKAIIAA 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----------------~~~~i~~~ 137 (406)
.+++|.+..++.|.+.+... .-.+.+.++|+.|+||||+|+.+++..... -...+...
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 46899999999999988753 335578899999999999999887653210 01111111
Q ss_pred hcCCC-----CCCCCHHHHH---HHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHH
Q 038234 138 LGCET-----SNLGSLQSLV---RCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARM 207 (406)
Q Consensus 138 l~~~~-----~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~ 207 (406)
...+. ......+++. ..++.. ..+++-++|+|++...+....+.|...+..-...+.+|+ |+..+.+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 11100 0112233333 222211 234566899999966655556667777765555666655 4444444433
Q ss_pred h-ccCCccccCCCChHHHHHhhhhhc
Q 038234 208 M-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 ~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+ .....+++.+++.++....+.+.+
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHH
Confidence 3 336788999999999888887754
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=6.3e-05 Score=72.10 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=94.4
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------HHHHHHH
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------RVAKAII 135 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~~~~~i~ 135 (406)
...++|.+.....+...+... ...+.+.|+|+.|+||||+|..+.+..-. ...+.+.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 356899999999999998753 33567899999999999999776553211 1111121
Q ss_pred HHhcC-------CC-C------CCCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEE
Q 038234 136 AALGC-------ET-S------NLGSLQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNIL 196 (406)
Q Consensus 136 ~~l~~-------~~-~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 196 (406)
..-.+ .. . .....+++. .+.+.+ .+++-++|+|++...+....+.+...+.....+..+|
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 11000 00 0 011233332 333332 3567799999998777666777777775544455555
Q ss_pred Eec-CChHHHHHh-ccCCccccCCCChHHHHHhhhhh
Q 038234 197 VTT-HKKTVARMM-ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 197 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
++| +...+...+ +....+.+.+++.++...++.+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 444 433333322 23578999999999999888773
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=9.4e-05 Score=71.31 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=96.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------------------HHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------------------RVAK 132 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------------~~~~ 132 (406)
.+++|.+...+.|.+.+... .-.+.+.++|+.|+||+++|..+.+..-. ...+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 56899999999999988753 33557899999999999999766543210 1111
Q ss_pred HHHHHhcCC-------CCC-------CCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCc
Q 038234 133 AIIAALGCE-------TSN-------LGSLQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGN 193 (406)
Q Consensus 133 ~i~~~l~~~-------~~~-------~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 193 (406)
.+......+ ..+ ...++++. .+.+.+ .+++-++|+|++...+....+.+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111111000 000 01233322 233332 2566799999998887777777877776655566
Q ss_pred EEEEecCCh-HHHHHh-ccCCccccCCCChHHHHHhhhhhc
Q 038234 194 NILVTTHKK-TVARMM-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 194 ~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+|++|.+. .+...+ .....+.+.+++.++..+++.+..
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 777777664 333332 336789999999999999887753
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=1.7e-05 Score=80.60 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=95.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..++.|.+++... .-.+.+.++|+.|+||||+|+.+++.... .....+...-...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 46899999999999998743 33556789999999999999888765321 1111111100000
Q ss_pred ------CCCCCCHHHH---HHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHHh-c
Q 038234 142 ------TSNLGSLQSL---VRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARMM-E 209 (406)
Q Consensus 142 ------~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~~-~ 209 (406)
.......+++ ...+... ..+++-++|+|+++..+....+.|...+........+|+ ||....+...+ .
T Consensus 88 dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 88 DVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred eEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 0111123333 2222221 235666899999977776677777777766555666554 54445555433 3
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
....+++.+++.++....+.+.+
T Consensus 168 Rc~~~~F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 168 RTHHYPFRLLPPRTMRALIARIC 190 (584)
T ss_pred hceEEEeeCCCHHHHHHHHHHHH
Confidence 36789999999999887776644
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.91 E-value=2.8e-05 Score=81.51 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=81.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHHHHHHHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVAKAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~~i~~~l~~~~~~ 144 (406)
+.++||+.++.++++.|.... ..-+.++|++|+|||++|+.+++.... .+...-...+.....-
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~ 259 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccch
Confidence 468999999999999888632 233468999999999999988754211 0000000111100000
Q ss_pred CCCHHHHHHHH-HhhccCcceeEEeeCCCCc------CccCcc--h-hhhccCCCCCCcEEEEecCChHHHHH-------
Q 038234 145 LGSLQSLVRCI-SESIEGKKYLVVLDDVWTD------DYTKWE--P-FQRCSANGQCGNNILVTTHKKTVARM------- 207 (406)
Q Consensus 145 ~~~~~~~~~~l-~~~l~~kr~LlVlDdvw~~------~~~~~~--~-l~~~l~~~~~gs~IivTtR~~~v~~~------- 207 (406)
..+.+...+.+ ...-+.++.+|++|+++.- .....+ . +...+. .+ .-++|-+|..++....
T Consensus 260 ~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g-~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SG-KIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CC-CeEEEecCChHHHHHHhhccHHH
Confidence 11222222222 2222356789999999531 001111 1 222222 21 2345555544443221
Q ss_pred hccCCccccCCCChHHHHHhhhhhc
Q 038234 208 MESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 ~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...-..+.+.+++.++...++....
T Consensus 338 ~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 338 ARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1234678999999999999988643
No 77
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=4.8e-05 Score=77.34 Aligned_cols=152 Identities=11% Similarity=0.199 Sum_probs=91.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~ 142 (406)
.+++|-+..++.|.+.+... .-...+.++|+.|+||||+|+.+.+.... ...+.+......+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 35789888888888877642 22567889999999999999888765431 11111211111100
Q ss_pred -----CCCCCHHHHHHHHHhh-----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-cc
Q 038234 143 -----SNLGSLQSLVRCISES-----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ES 210 (406)
Q Consensus 143 -----~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~ 210 (406)
......+++. .+.+. ..+++-++|+|++...+....+.|...+........+|++|.+ ..+...+ ..
T Consensus 91 ~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 91 VEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred EEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 0011222222 22222 2456679999999766655666777776544445556655544 4444332 33
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+++.+++.++....+.+.+
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHH
Confidence 5688999999999888777643
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.89 E-value=5.9e-05 Score=68.05 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=60.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcch
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEP 181 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~ 181 (406)
...+.|+|.+|+|||+||+.+++.... -+... ...+.......+ .. ..+.-+||+||+...+...-..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~---------~~~~~-~~i~~~~~~~~~-~~-~~~~~~liiDdi~~l~~~~~~~ 109 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY---------GGRNA-RYLDAASPLLAF-DF-DPEAELYAVDDVERLDDAQQIA 109 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---------CCCcE-EEEehHHhHHHH-hh-cccCCEEEEeChhhcCchHHHH
Confidence 457889999999999999998875311 00000 000001111111 11 1234479999995433222222
Q ss_pred hhhccCC-CCCCc-EEEEecCChHHHH--------HhccCCccccCCCChHHHHHhhhh
Q 038234 182 FQRCSAN-GQCGN-NILVTTHKKTVAR--------MMESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 182 l~~~l~~-~~~gs-~IivTtR~~~v~~--------~~~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
+...+.. ...+. .+|+|++...... .+.....+++.+++.++-..++.+
T Consensus 110 L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 110 LFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 3333322 12233 4667766533211 222246788999998765555544
No 79
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=5.3e-05 Score=77.89 Aligned_cols=153 Identities=10% Similarity=0.172 Sum_probs=91.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCE 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~ 141 (406)
.+++|.+..++.|.+++... .-.+.+.++|..|+||||+|+.+++.... ...+.+......+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 46899999999998888743 23456789999999999999888754311 2222222211111
Q ss_pred C-----CCCCCHHHH---HHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-cc
Q 038234 142 T-----SNLGSLQSL---VRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ES 210 (406)
Q Consensus 142 ~-----~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~ 210 (406)
. ......+++ +..+... ..+++-++|+|++...+....+.|...+......+.+|+++.+ ..+...+ ..
T Consensus 91 ~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 91 VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 0 011223333 2222211 2356678999999655544566666666554455666655543 3443332 23
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+.+.+++.++....+.+.+
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHH
Confidence 5678888999988877776654
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.87 E-value=9.4e-05 Score=68.25 Aligned_cols=149 Identities=10% Similarity=0.098 Sum_probs=74.6
Q ss_pred ceecchhhHHHHH---HHHhc------CCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------HH----HHHHH
Q 038234 76 EICGRDYKKNELL---SKLLS------DSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------RV----AKAII 135 (406)
Q Consensus 76 ~~vGR~~~~~~l~---~~L~~------~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------~~----~~~i~ 135 (406)
.++|.+..++++. .++.. ..-...+....+.++|++|+||||+|+.+++.... .+ ..++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 4788777665554 33211 10001334567889999999999999998764211 00 00000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc--------cCcchhhhccCCCCCCcEEEEecCChHHHH-
Q 038234 136 AALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY--------TKWEPFQRCSANGQCGNNILVTTHKKTVAR- 206 (406)
Q Consensus 136 ~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------~~~~~l~~~l~~~~~gs~IivTtR~~~v~~- 206 (406)
.... ......+...+... ..-+|++|++..-.. ...+.+...+........+|+++.......
T Consensus 87 ~~~~-----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 87 GEYI-----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhhc-----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 0000 00112222233322 234899999954211 112223333333333345555554433211
Q ss_pred ------Hhcc-CCccccCCCChHHHHHhhhhhc
Q 038234 207 ------MMES-TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 207 ------~~~~-~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.... ...+.+++++.++-.+++.+.+
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 1111 3467899999999888887654
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.83 E-value=2.1e-05 Score=68.82 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=74.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC------CCCCCCHHHHH---HHHHhh-c
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE------TSNLGSLQSLV---RCISES-I 159 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~------~~~~~~~~~~~---~~l~~~-l 159 (406)
.+.+.++|+.|+|||++|+.+.+.... .....+...-..+ .......+.+. +.+... .
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 467899999999999999877554211 0000000000000 00112233443 322221 2
Q ss_pred cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccCCccccCCCChHHHHHhhhhh
Q 038234 160 EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 160 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.+.+-++|+||+...+....+.+...+......+.+|++|++. .+...+ .....+.+.+++.++....+.+.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 3567789999996665555666777776655566777766653 332222 23568899999988887776653
No 82
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.80 E-value=4e-05 Score=81.96 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=37.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++||+.++.++++.|.... ..-+.++|.+|+|||+||+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999997542 3346699999999999998887654
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=4.5e-05 Score=78.70 Aligned_cols=153 Identities=14% Similarity=0.176 Sum_probs=93.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH-------HHHHHHHHhcCCCC----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR-------VAKAIIAALGCETS---- 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~~~~i~~~l~~~~~---- 143 (406)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++..-.. .........+....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 45889999999999999753 335677899999999999998886542110 00000011111100
Q ss_pred ---CCCCH---HHHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEE-EecCChHHHHH-hccCCcc
Q 038234 144 ---NLGSL---QSLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNIL-VTTHKKTVARM-MESTNFI 214 (406)
Q Consensus 144 ---~~~~~---~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~v~~~-~~~~~~~ 214 (406)
..... +++...+... ..+++-++|+|++.......++.+...+-.....+.+| +|+....+... ......+
T Consensus 93 daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~i 172 (725)
T PRK07133 93 DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRF 172 (725)
T ss_pred eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeE
Confidence 01122 2333333222 23666799999997666556777777665544455544 55555555433 3345789
Q ss_pred ccCCCChHHHHHhhhhhc
Q 038234 215 SIKELSTQECWSLFKQES 232 (406)
Q Consensus 215 ~l~~L~~~~a~~Lf~~~~ 232 (406)
.+.+++.++....+...+
T Consensus 173 eF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 173 NFRRISEDEIVSRLEFIL 190 (725)
T ss_pred EccCCCHHHHHHHHHHHH
Confidence 999999999888777643
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=9.9e-05 Score=73.28 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=73.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
..-+.|+|..|+|||+|++++.+.... .+...+...+.... .....+.+.+. +.-+|||
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~dvLiI 212 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-------KEIEQFKNEIC-QNDVLII 212 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cCCEEEE
Confidence 456889999999999999998873211 45555555443210 11122222222 3448999
Q ss_pred eCCCCcCcc-Cc-chhhhccCC-CCCCcEEEEecCCh---------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDDYT-KW-EPFQRCSAN-GQCGNNILVTTHKK---------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||+...... .+ +.+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.+.+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 999643211 12 223333321 12345788887643 233334456788899999999999998765
No 85
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.78 E-value=2.8e-05 Score=83.39 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=80.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH----HHHH--H----HHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR----VAKA--I----IAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~~~--i----~~~l~~~~~~ 144 (406)
..++||+.++.+++..|.... ...+.++|.+|+|||++|+.+....... .+.. + +..+......
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~ 246 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY 246 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh
Confidence 458999999999999997532 3345689999999999998877653210 0000 0 0011000001
Q ss_pred CCCHH-HHHHHHHhhcc-CcceeEEeeCCCCcCc-----cCcchhhhccCCCCCC-cEEEEecCChHHHHH-------hc
Q 038234 145 LGSLQ-SLVRCISESIE-GKKYLVVLDDVWTDDY-----TKWEPFQRCSANGQCG-NNILVTTHKKTVARM-------ME 209 (406)
Q Consensus 145 ~~~~~-~~~~~l~~~l~-~kr~LlVlDdvw~~~~-----~~~~~l~~~l~~~~~g-s~IivTtR~~~v~~~-------~~ 209 (406)
..+.+ .+...+...-. +++.+|++|+++.-.. ..-+......|....| -.+|-+|.....-.. ..
T Consensus 247 ~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 247 RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 11222 22233332222 4689999999953210 0011111111212223 345545544433221 12
Q ss_pred cCCccccCCCChHHHHHhhhhh
Q 038234 210 STNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
....+.+...+.++...++...
T Consensus 327 Rf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 327 RFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cCCEEEeCCCCHHHHHHHHHHH
Confidence 2456789999999998888754
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=97.77 E-value=0.00025 Score=66.19 Aligned_cols=123 Identities=12% Similarity=0.111 Sum_probs=66.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------HH----HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------RV----AKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDD 170 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------~~----~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 170 (406)
...+.++|.+|+|||++|+.+++.... .+ ...+.....+.. .......+.+. ..-+|+||+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~-----~~~~~~~l~~a---~ggVLfIDE 130 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHT-----APKTKEVLKKA---MGGVLFIDE 130 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccc-----hHHHHHHHHHc---cCCEEEEEc
Confidence 345889999999999999999654211 00 011111111111 11122223322 234999999
Q ss_pred CCCcC----ccCc-----chhhhccCCCCCCcEEEEecCChHHHHHh--------ccCCccccCCCChHHHHHhhhhhc
Q 038234 171 VWTDD----YTKW-----EPFQRCSANGQCGNNILVTTHKKTVARMM--------ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 171 vw~~~----~~~~-----~~l~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+..-. ...+ +.+...+.....+..||+++....+.... .-...+.+.+++.++..+++...+
T Consensus 131 ~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 131 AYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred cchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 95320 0112 22333344444456777777654432221 115678999999999988887754
No 87
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00027 Score=71.99 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=95.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|-+..+..|..++... .-.+.+.++|+.|+||||+|+.+++.... ...+.+...-...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 46899999999999999753 33567899999999999999988775421 0111111110000
Q ss_pred ----CCCCCCHHHHHHHH---Hh-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccC
Q 038234 142 ----TSNLGSLQSLVRCI---SE-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-EST 211 (406)
Q Consensus 142 ----~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~ 211 (406)
.......+++.... .. -..+++-++|+|++...+...++.+...+......+.+|++|.. ..+...+ ...
T Consensus 91 ~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc 170 (563)
T PRK06647 91 IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRC 170 (563)
T ss_pred EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhc
Confidence 00112334443322 21 13466678999999766655667777777655556666665543 4444332 335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHH
Confidence 678999999999887777654
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=4.1e-05 Score=78.38 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=91.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|.+..+..|.+.+... .-.+.+.++|+.|+||||+|+.+.+.... .....+...-..+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 46899999999999988743 23567789999999999999887665321 1111111100000
Q ss_pred ----CCCCCCHH---HHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHHh-ccC
Q 038234 142 ----TSNLGSLQ---SLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARMM-EST 211 (406)
Q Consensus 142 ----~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~~-~~~ 211 (406)
.......+ ++...+... ..+++-++|+|+++..+....+.|...+......+.+|+ ||....+...+ ...
T Consensus 91 ~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc 170 (576)
T PRK14965 91 FEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRC 170 (576)
T ss_pred eeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhh
Confidence 00111222 333322211 235556899999976665566677777765445556654 55545555443 336
Q ss_pred CccccCCCChHHHHHhhhhh
Q 038234 212 NFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~ 231 (406)
..+++.+++.++....+...
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i 190 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYI 190 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHH
Confidence 77889999998877666543
No 89
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00028 Score=70.64 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=90.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----H-----HHHHHHHHh-cCCC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----R-----VAKAIIAAL-GCET-- 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~-----~~~~i~~~l-~~~~-- 142 (406)
.+++|.+..+..|.+++... .-.+.+.++|+.|+||||+|+.++..... . .... ...+ .+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~d 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFPD 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCCc
Confidence 35889999999999999753 23556788999999999999887664321 0 0000 0001 0000
Q ss_pred ------CCCCCHH---HHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHHh-cc
Q 038234 143 ------SNLGSLQ---SLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARMM-ES 210 (406)
Q Consensus 143 ------~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~~-~~ 210 (406)
......+ .+...+... ..+++-++|+|+++.......+.+...+........+|+ ||+...+...+ ..
T Consensus 90 ~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 90 LIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred EEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 0111222 333222221 245677999999965554455666666655444555554 44444444332 33
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+.+.+++.++....+.+.+
T Consensus 170 c~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 170 CQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred ceEEEcCCCCHHHHHHHHHHHH
Confidence 5678999999999887777654
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00022 Score=70.23 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
...+.|+|.+|+|||+|++++++.... .+...+...+... ..+.....+ . +.-+|||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~-----~~~~~~~~~----~-~~dlLii 205 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN-----KMEEFKEKY----R-SVDLLLI 205 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC-----CHHHHHHHH----H-hCCEEEE
Confidence 456889999999999999998865321 3333333333211 122222222 2 1348999
Q ss_pred eCCCCcCccCc--chhhhccCC-CCCCcEEEEecCCh-H--------HHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDDYTKW--EPFQRCSAN-GQCGNNILVTTHKK-T--------VARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~~~~~--~~l~~~l~~-~~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||++......+ ..+...+.. ...|..+|+|+... . +...+.....+.+.+.+.++-..++.+.+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 99964321111 123222221 12345677777642 2 11222234578899999999888888765
No 91
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=3.4e-05 Score=76.60 Aligned_cols=153 Identities=13% Similarity=0.180 Sum_probs=89.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhc--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALG-- 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~-- 139 (406)
.+++|.+..+..+.+++... .-.+.+.++|+.|+||||+|+.+.+.... .....+...-.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 46899999999999998743 23467889999999999999887654211 00000000000
Q ss_pred ---CCCCCCCCHHHHHH---HHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec-CChHHHHHh-cc
Q 038234 140 ---CETSNLGSLQSLVR---CISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT-HKKTVARMM-ES 210 (406)
Q Consensus 140 ---~~~~~~~~~~~~~~---~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v~~~~-~~ 210 (406)
.........+++.. .+... ..+++-++|+|++........+.+...+.+...++.+|++| +...+...+ ..
T Consensus 92 ~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR 171 (451)
T PRK06305 92 VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR 171 (451)
T ss_pred eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh
Confidence 00001112233322 22111 23567789999996554444555666665544466666555 333333332 33
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...+++.+++.++....+.+.+
T Consensus 172 c~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 172 CQKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred ceEEeCCCCCHHHHHHHHHHHH
Confidence 6788999999999887776643
No 92
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0002 Score=73.67 Aligned_cols=153 Identities=13% Similarity=0.199 Sum_probs=95.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGC- 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~- 140 (406)
.+++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+.... ..-..+-..-..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998753 33567899999999999999877654210 000001000000
Q ss_pred ----CCCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHHh-cc
Q 038234 141 ----ETSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARMM-ES 210 (406)
Q Consensus 141 ----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~~-~~ 210 (406)
........+++...+... ..+++-++|+|++...+...++.|...+..-..++.+|+ |+....+...+ ..
T Consensus 92 ~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR 171 (614)
T PRK14971 92 IHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR 171 (614)
T ss_pred eEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh
Confidence 001112234444433221 335666899999976665667777777766555666555 54545555443 33
Q ss_pred CCccccCCCChHHHHHhhhhhc
Q 038234 211 TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..++++.+++.++....+.+.+
T Consensus 172 c~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 172 CQIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred hheeecCCCCHHHHHHHHHHHH
Confidence 6789999999999888887644
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00019 Score=73.83 Aligned_cols=153 Identities=12% Similarity=0.191 Sum_probs=91.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------HHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------RVAKAIIAALGC 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~~~~i~~~l~~ 140 (406)
.+++|.+..+..|..++... .-.+.+.++|..|+||||+|+.+++.... ...+.+......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 45889999999999988753 22456789999999999999988765321 111222111111
Q ss_pred C-----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-c
Q 038234 141 E-----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-E 209 (406)
Q Consensus 141 ~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~ 209 (406)
+ .......+.+...+... ..+++-++|+|++...+...++.|...+..-...+.+|++|.+ ..+...+ .
T Consensus 91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 1 01112233333332221 2355668999999766655666777777654445555555544 3333332 3
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
....+.+..++.++....+.+.+
T Consensus 171 Rc~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 171 RCQRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred heeEEEecCCCHHHHHHHHHHHH
Confidence 35678888999888777666543
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00036 Score=69.13 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=69.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDD 170 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 170 (406)
..-+.|+|+.|+|||+|++++++.... .+...+...+.. ... ..++..+. +.-+|++||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~-----~~~----~~f~~~~~-~~dvLiIDD 210 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRS-----GEM----QRFRQFYR-NVDALFIED 210 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhc-----chH----HHHHHHcc-cCCEEEEcc
Confidence 456889999999999999998875421 233333333321 011 12222222 345889999
Q ss_pred CCCcCccCc--chhhhccCC-CCCCcEEEEecCCh-H--------HHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 171 VWTDDYTKW--EPFQRCSAN-GQCGNNILVTTHKK-T--------VARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 171 vw~~~~~~~--~~l~~~l~~-~~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.......+ +.+...+.. ...|..||+||... . +...+.....+.+.+++.++-..++.+.+
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 965322122 122222211 11345788888552 1 22223335788999999999998888765
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.67 E-value=1.4e-05 Score=75.82 Aligned_cols=253 Identities=17% Similarity=0.085 Sum_probs=147.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH------------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF------------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGK 162 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 162 (406)
..+.+.++|.|||||||++-++.. ... .+.-.++..++.... +-+..+..+.....++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHhhh
Confidence 367899999999999999987776 211 222222332332221 1133445566677789
Q ss_pred ceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHHhccCCccccCCCChH-HHHHhhhhhc---------
Q 038234 163 KYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARMMESTNFISIKELSTQ-ECWSLFKQES--------- 232 (406)
Q Consensus 163 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~--------- 232 (406)
|.++|+||.-+- .+.-..+...+..+...-.|+.|+|..-.. .......+.+|+.. ++.++|...+
T Consensus 89 r~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999998211 011112233333444455788888864332 33566777888766 6888887766
Q ss_pred -------cccch------hHHHHHHhhhhcchhhH-------HhhhhhccchhhhhhhhhhhHHHHHHhccccCChhhhh
Q 038234 233 -------SAKPC------LLLQKLLGVSCALKELE-------MSGKNSLDSELWQLQELEKDLFSLLLLNYYDLPYRIKQ 292 (406)
Q Consensus 233 -------i~~~c------PLai~~~g~~L~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~ 292 (406)
+...| |++|...++..+.-... +.|...-.. ............+.+.+||.-|..-.+-
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe~~ 243 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWERA 243 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHHHH
Confidence 22233 99999888776554311 112221111 1112234567899999999999999999
Q ss_pred HHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHHHhcCCcceeecCCCCcccEEEECHHHHHHHHH
Q 038234 293 CFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYLTARSFFQEFHKGSDDIITECKMHDIVHDFAQF 372 (406)
Q Consensus 293 cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~ 372 (406)
.|.-++.|...|.... ..|.+-|-.-. .+.-..-.-+..|++.+++..-... ....|+.-+-++.|+..
T Consensus 244 ~~~rLa~~~g~f~~~l----~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~---~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 244 LFGRLAVFVGGFDLGL----ALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLL---GRARYRLLETGRRYALA 312 (414)
T ss_pred HhcchhhhhhhhcccH----HHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhh---hHHHHHHHHHHHHHHHH
Confidence 9999999999865542 33444332110 0111222335677788887532221 11335555556666544
Q ss_pred h
Q 038234 373 L 373 (406)
Q Consensus 373 ~ 373 (406)
+
T Consensus 313 e 313 (414)
T COG3903 313 E 313 (414)
T ss_pred H
Confidence 3
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.67 E-value=0.00015 Score=67.72 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=65.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH----------HH-HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF----------RV-AKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDV 171 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~-~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 171 (406)
.-+.++|++|+|||++|+.+++.... .+ ..++...+.+.. .......+.+. ..-+|+||++
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi 130 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT-----APKTKEILKRA---MGGVLFIDEA 130 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccc-----hHHHHHHHHHc---cCcEEEEech
Confidence 35889999999999999666543211 00 011222221111 11222223332 2358999999
Q ss_pred CCc----C-----ccCcchhhhccCCCCCCcEEEEecCChHHHHHhc--------cCCccccCCCChHHHHHhhhhhc
Q 038234 172 WTD----D-----YTKWEPFQRCSANGQCGNNILVTTHKKTVARMME--------STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 172 w~~----~-----~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~--------~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..- + ....+.+...+.....+.+||+++.....-.... -...+++.+++.+|-..++....
T Consensus 131 ~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 131 YYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred hhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 522 0 1112334444444444556777765443222211 14568999999999998887754
No 97
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.66 E-value=0.00017 Score=63.58 Aligned_cols=123 Identities=19% Similarity=0.300 Sum_probs=74.1
Q ss_pred ccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHH
Q 038234 71 FIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQS 150 (406)
Q Consensus 71 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 150 (406)
.++-..++|.+...+.|++--..-.. ..+..-|.+||.-|+||++|++++.+....+-+. -+.....+..++-.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr----LVEV~k~dl~~Lp~ 129 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLR----LVEVDKEDLATLPD 129 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCCe----EEEEcHHHHhhHHH
Confidence 34445788988888888765433221 3446678999999999999999988775432111 01111112233344
Q ss_pred HHHHHHhhccCcceeEEeeCCCCc-CccCcchhhhccCCC---CCCcEEEEecCC
Q 038234 151 LVRCISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANG---QCGNNILVTTHK 201 (406)
Q Consensus 151 ~~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~gs~IivTtR~ 201 (406)
++..|+. ..+||.|..||+--+ +...+..++..+..+ .+...++..|.+
T Consensus 130 l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 130 LVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 4444444 478999999999533 334566677777532 233345544444
No 98
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00052 Score=69.00 Aligned_cols=153 Identities=11% Similarity=0.152 Sum_probs=94.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++|-+..++.|...+... .-.++..++|+.|+||||+|+.+.+..-. .....+.......
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899988889999988643 33567789999999999999877654210 1111111111110
Q ss_pred ----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHH-hccC
Q 038234 142 ----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARM-MEST 211 (406)
Q Consensus 142 ----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~ 211 (406)
.......+++...+... ..+++-++|+|++...+....+.+...+-.....+.+|++|.+. .+... ....
T Consensus 89 ~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc 168 (535)
T PRK08451 89 IEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168 (535)
T ss_pred EEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc
Confidence 01111244444444321 22556689999997776666677777776555567777666553 22222 2236
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+.+.+
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHH
Confidence 788999999999887776544
No 99
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.64 E-value=0.00024 Score=62.42 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.++||-++.++.+.-... +.+..-+.|.||+|+||||-+..+++..-..-.++-.-.+..+.. -..+-+...
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde--RGIDvVRn~ 98 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE--RGIDVVRNK 98 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc--cccHHHHHH
Confidence 468999888887765554 345777899999999999977766655433333333334433322 222333333
Q ss_pred HHhhc-------cCcceeEEeeCCCCcCc
Q 038234 155 ISESI-------EGKKYLVVLDDVWTDDY 176 (406)
Q Consensus 155 l~~~l-------~~kr~LlVlDdvw~~~~ 176 (406)
++.+- .++.-.+|||...++..
T Consensus 99 IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 99 IKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred HHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 33222 25556899999977653
No 100
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00073 Score=65.29 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=75.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEE
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVV 167 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlV 167 (406)
....+-|+|..|.|||.|++++.+.... .+...+...+.. .-...+++.. .-=+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~---------~~~~~Fk~~y--~~dlll 180 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD---------NEMEKFKEKY--SLDLLL 180 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh---------hhHHHHHHhh--ccCeee
Confidence 5778999999999999999998876432 333333333221 1122333333 334899
Q ss_pred eeCCCCcCc-cCcch-hhhccCC-CCCCcEEEEecCCh---------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 168 LDDVWTDDY-TKWEP-FQRCSAN-GQCGNNILVTTHKK---------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 168 lDdvw~~~~-~~~~~-l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+||++.-.. +.|.. +...+.. ...|..||+|++.. .+.......-++++.+++.+....++.+.+
T Consensus 181 IDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 181 IDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred echHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 999965221 12222 2222221 12244899998652 455555668899999999999999998866
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.62 E-value=0.0002 Score=66.08 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred ccCCCceecchh---hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------------
Q 038234 71 FIDESEICGRDY---KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------- 128 (406)
Q Consensus 71 ~~~~~~~vGR~~---~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------- 128 (406)
++..+.+||-.. .++.|.++|.... .....-+.|+|.+|+|||++++.+.+....
T Consensus 30 ~i~~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 30 YIRADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred HHhcCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 455677777543 3555555555433 456677999999999999999999865322
Q ss_pred ----HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccC-cceeEEeeCCCC
Q 038234 129 ----RVAKAIIAALGCETSNLGSLQSLVRCISESIEG-KKYLVVLDDVWT 173 (406)
Q Consensus 129 ----~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~ 173 (406)
++...|+..++...........+.......++. +--+||+|.+++
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 888999999988876666666655555555543 445899999944
No 102
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00015 Score=70.72 Aligned_cols=132 Identities=18% Similarity=0.232 Sum_probs=77.1
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTK 178 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~ 178 (406)
..+...+.+.|++|+|||+||..++....+-+.+-+.-.-.....+......+.+.....-+..--.||+||+ +..-+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdi--ErLiD 612 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDI--ERLLD 612 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcch--hhhhc
Confidence 3457778899999999999999998776542211110000000001111223334444555566679999999 44445
Q ss_pred cchhhhcc---------------CCCCCCcEEEEecCChHHHHHhcc----CCccccCCCCh-HHHHHhhhhhc
Q 038234 179 WEPFQRCS---------------ANGQCGNNILVTTHKKTVARMMES----TNFISIKELST-QECWSLFKQES 232 (406)
Q Consensus 179 ~~~l~~~l---------------~~~~~gs~IivTtR~~~v~~~~~~----~~~~~l~~L~~-~~a~~Lf~~~~ 232 (406)
|..+...+ |..++.--|+-||....+.+.|+. ...|.+..++. ++..+.+....
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN 686 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc
Confidence 54433322 233334445668888889888865 56677887776 56666655533
No 103
>PRK08116 hypothetical protein; Validated
Probab=97.61 E-value=9.6e-05 Score=68.28 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=52.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDV 171 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 171 (406)
..+.++|.+|+|||+||.++++.... .+...+....... .......+... +.+- =||||||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~--~~~~~~~~~~~----l~~~-dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSS--GKEDENEIIRS----LVNA-DLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcc--ccccHHHHHHH----hcCC-CEEEEecc
Confidence 45889999999999999999886422 3333333332211 11122222222 2322 38999999
Q ss_pred CCcCccCcch--hhhccCC-CCCCcEEEEecCCh
Q 038234 172 WTDDYTKWEP--FQRCSAN-GQCGNNILVTTHKK 202 (406)
Q Consensus 172 w~~~~~~~~~--l~~~l~~-~~~gs~IivTtR~~ 202 (406)
......+|.. +...+.. ..+|..+|+||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 6544445543 3333322 13456788888753
No 104
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00063 Score=61.62 Aligned_cols=148 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+|+|.++-.++|.=.+.... ..++.+-.+.++|++|.||||||.-+++...+.+.. .+.+......++...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~-------tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI-------TSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe-------cccccccChhhHHHH
Confidence 569999887777765554321 125667789999999999999999998876542210 011222223334444
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccC--------CCCCC-----------cEEEEecCChHHHHHhcc--CCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSA--------NGQCG-----------NNILVTTHKKTVARMMES--TNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~--------~~~~g-----------s~IivTtR~~~v~~~~~~--~~~ 213 (406)
+-. |+ +.=.|++|.++.-....-+.+-.... ..+++ +-|=.|||.-.+..-+.. .-+
T Consensus 98 Lt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~ 175 (332)
T COG2255 98 LTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGII 175 (332)
T ss_pred Hhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCe
Confidence 333 22 23356677775433211111111110 11222 334568887554433322 456
Q ss_pred cccCCCChHHHHHhhhhhc
Q 038234 214 ISIKELSTQECWSLFKQES 232 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+++--+.+|-.++..+.+
T Consensus 176 ~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 176 QRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred eeeecCCHHHHHHHHHHHH
Confidence 6788888888888888766
No 105
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00028 Score=72.01 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=91.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~ 142 (406)
.+++|.+..++.|.+++... .-.+.+.++|+.|+|||++|+.+.+.... .....+......+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 46899999999999998753 23567788999999999999887654211 11111111111110
Q ss_pred -----CCCCCHHH---HHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEE-ecCChHHHHHh-ccC
Q 038234 143 -----SNLGSLQS---LVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILV-TTHKKTVARMM-EST 211 (406)
Q Consensus 143 -----~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v~~~~-~~~ 211 (406)
......++ +...+... ..++.-++|+|++.......++.|...+........+|+ ||....+...+ ...
T Consensus 91 ~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc 170 (559)
T PRK05563 91 IEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRC 170 (559)
T ss_pred EEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHh
Confidence 01122232 22222211 245667889999976655566677776655444555554 44444443332 335
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+++.+++.++....+...+
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHH
Confidence 678889999988877776644
No 106
>PHA00729 NTP-binding motif containing protein
Probab=97.58 E-value=0.00032 Score=62.38 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=41.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChHHH---HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCc-c-eeEEeeCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDFRV---AKAIIAALGCETSNLGSLQSLVRCISESIEGK-K-YLVVLDDV 171 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-r-~LlVlDdv 171 (406)
....|.|+|.+|+||||||..+.+.....+ .............-.-+.+++...++....+. + =|||+||+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~ 91 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDA 91 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 356789999999999999999877532111 00000000011112245566666666655432 2 38999995
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.58 E-value=0.00012 Score=71.32 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=81.5
Q ss_pred ceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH----HHHHHHhcCCCCC
Q 038234 76 EICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA----KAIIAALGCETSN 144 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~~i~~~l~~~~~~ 144 (406)
++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||+||+++++.....+. ..+.....+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g---- 221 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG---- 221 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc----
Confidence 467888888887776532100 01245677899999999999999999886543111 111111100
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCCCcC------ccC--------cchhhhccCC--CCCCcEEEEecCChHHHHH-
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVWTDD------YTK--------WEPFQRCSAN--GQCGNNILVTTHKKTVARM- 207 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~~~gs~IivTtR~~~v~~~- 207 (406)
.....+...+.......+.+|+||++...- ... +..+...+.. ...+..||+||...+....
T Consensus 222 -e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 222 -EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300 (398)
T ss_pred -hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence 112223333334445678999999974310 000 1112222221 1235567777776443221
Q ss_pred -hc---cCCccccCCCChHHHHHhhhh
Q 038234 208 -ME---STNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 208 -~~---~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
.. -...+.+...+.++...+|..
T Consensus 301 llR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred HcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 11 145577887787777666664
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00047 Score=68.38 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=70.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
..-+.|+|.+|+|||+|++++++.... ++...+...+... ..+. +.+.+..+.-+|+|
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~-----~~~~----f~~~~~~~~dvLlI 200 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----KLNE----FREKYRKKVDVLLI 200 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc-----cHHH----HHHHHHhcCCEEEE
Confidence 445999999999999999988875321 3444444443211 1222 22222234568999
Q ss_pred eCCCCcC-ccCc-chhhhccCC-CCCCcEEEEecC-ChHHH--------HHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDD-YTKW-EPFQRCSAN-GQCGNNILVTTH-KKTVA--------RMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~-~~~~-~~l~~~l~~-~~~gs~IivTtR-~~~v~--------~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||++.-. ...+ ..+...+.. ...|..||+||. .+.-. ..+....++.+++.+.+.-..++++.+
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 9996321 1111 123222221 122446888875 33221 122335678899999999999888765
No 109
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0006 Score=69.24 Aligned_cols=121 Identities=12% Similarity=0.172 Sum_probs=71.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
...+.|+|..|+|||.|++++++.... .+...+...+.. ...+. +++.+. +-=+|||
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~-----~~~~~----f~~~y~-~~DLLlI 383 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD-----GKGDS----FRRRYR-EMDILLV 383 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh-----ccHHH----HHHHhh-cCCEEEE
Confidence 345899999999999999988875321 333333333221 11111 222222 1348999
Q ss_pred eCCCCcCcc-Ccc-hhhhccCC-CCCCcEEEEecCCh---------HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDDYT-KWE-PFQRCSAN-GQCGNNILVTTHKK---------TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~~~-~~~-~l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||+...... .|. .|...+.. ...|..|||||... .+...+....++++.+.+.+.-..++.+.+
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 999643221 222 23333321 12355688888762 233444557888999999999999998876
No 110
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00013 Score=72.26 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=66.5
Q ss_pred ceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHH
Q 038234 76 EICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQ 149 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~ 149 (406)
++=|.++.+++|.+++..-.++ +-.+.+-|.++|++|.|||.||+++++...+-++.--.-.+-... .-.+.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SGESEk 269 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SGESEK 269 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-CcccHH
Confidence 4668999999998887654322 245577899999999999999999999987744322221221111 123445
Q ss_pred HHHHHHHhhccCcceeEEeeCCC
Q 038234 150 SLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 150 ~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
.+.....+....-++++++|++.
T Consensus 270 kiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred HHHHHHHHHhccCCeEEEeeccc
Confidence 55666666677889999999984
No 111
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.51 E-value=0.00051 Score=72.66 Aligned_cols=113 Identities=15% Similarity=0.243 Sum_probs=64.2
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------HHHH-HHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------RVAK-AIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------~~~~-~i~~~l~~~~ 142 (406)
..++|.+..++.+.+.+..... ..+.+..++.++|++|+|||.||+.+++.... .+.. .....+.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 4578888888888887763210 01234567899999999999999998775432 1111 0111111111
Q ss_pred CCCCCHHHHHHHHHhhccCcc-eeEEeeCCCCcCccCcchhhhccCC
Q 038234 143 SNLGSLQSLVRCISESIEGKK-YLVVLDDVWTDDYTKWEPFQRCSAN 188 (406)
Q Consensus 143 ~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~ 188 (406)
+.....+. ...+.+.++.++ .+++||++...+.+.++.|...+..
T Consensus 534 ~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 534 PGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred CCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11111110 112223333333 5999999987777666667666643
No 112
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.0005 Score=70.54 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=43.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRV 130 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 130 (406)
.+++|-++.++++..++...... ....+++.|+|++|+||||+++.+++.....+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 57899999999999998754321 23356899999999999999999998766544
No 113
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.49 E-value=0.00027 Score=70.68 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=83.9
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHH-----HHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAK-----AIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-----~i~~~l~~~~ 142 (406)
.++.|.+..++++.+.+...-. -+-...+-+.++|++|+|||++|+++++.....+.. ..+..+....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 4567899998888887642100 012345678999999999999999999875322110 0000000000
Q ss_pred ---CCCCCHH----HHHHHHHhh-ccCcceeEEeeCCCCcC-------ccC-----cchhhhccCCC--CCCcEEEEecC
Q 038234 143 ---SNLGSLQ----SLVRCISES-IEGKKYLVVLDDVWTDD-------YTK-----WEPFQRCSANG--QCGNNILVTTH 200 (406)
Q Consensus 143 ---~~~~~~~----~~~~~l~~~-l~~kr~LlVlDdvw~~~-------~~~-----~~~l~~~l~~~--~~gs~IivTtR 200 (406)
.-..... .+....++. ..+++++|+||+++.-- ..+ ...+...+... ..+..||.||.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 0001111 122222221 23578999999995321 001 11233333321 13444555665
Q ss_pred ChHHHH-Hh-c---cCCccccCCCChHHHHHhhhhhc
Q 038234 201 KKTVAR-MM-E---STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 201 ~~~v~~-~~-~---~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
...... .+ . -...+++...+.++..++|.+..
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 443221 11 1 14568999999999999998753
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.49 E-value=0.00066 Score=67.77 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=69.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
...+.|+|.+|+|||+|++++.+.... .+...+...+.. ...+.. .+.+. +.-+|||
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~-----~~~~~~----~~~~~-~~dlLii 217 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRN-----NTMEEF----KEKYR-SVDVLLI 217 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHc-----CcHHHH----HHHHh-cCCEEEE
Confidence 456899999999999999998875321 233333333321 111222 22222 3448999
Q ss_pred eCCCCcCccC-c-chhhhccCC-CCCCcEEEEecCChH---------HHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDDYTK-W-EPFQRCSAN-GQCGNNILVTTHKKT---------VARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~~~~-~-~~l~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||++.-.... + ..+...+.. ...|..||+||.... +...+....++++++.+.++-..++.+.+
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 9995432111 1 123222211 122445777776531 12233335678999999999999988866
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.00017 Score=74.28 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=82.8
Q ss_pred CceecchhhHHHHHHH---HhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSK---LLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.++.|.++..+++.+. +..... -+....+-+.++|++|+|||+||++++......+...-...+..... ....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~-g~~~ 261 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV-GVGA 261 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh-hhhH
Confidence 4577877655555444 332210 01233556899999999999999999876433111000000000000 0112
Q ss_pred HHHHHHHHhhccCcceeEEeeCCCCcC----------ccC----cchhhhccCC--CCCCcEEEEecCChHHHH-Hh-c-
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVWTDD----------YTK----WEPFQRCSAN--GQCGNNILVTTHKKTVAR-MM-E- 209 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~~~gs~IivTtR~~~v~~-~~-~- 209 (406)
..+...+.....+.+++|+|||+..-. ... +..+...+.. ...+-.||.||...+... .+ .
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRp 341 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRP 341 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcc
Confidence 233444555556788999999994321 011 1122222221 223555666666543322 11 1
Q ss_pred --cCCccccCCCChHHHHHhhhhhc
Q 038234 210 --STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 --~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-...+.+...+.++-.++|+..+
T Consensus 342 GRFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 342 GRFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred ccCceEEEECCCCHHHHHHHHHHHH
Confidence 24677888888888888887654
No 116
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00027 Score=73.23 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=80.8
Q ss_pred CceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh----H-------HH-HHHHHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKD----F-------RV-AKAIIAALG 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~-------~~-~~~i~~~l~ 139 (406)
..++|-+..+..+.+.+.... .+.+.+..+...+|+.|||||-||++++...- . ++ .+.-...+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHh
Confidence 568999999999988875332 11256677888999999999999887765432 1 11 112233344
Q ss_pred CCCCCCCCHHHHHHHHHhhccCcce-eEEeeCCCCcCccCcchhhhccCCC----CC-------CcEEEEecCC
Q 038234 140 CETSNLGSLQSLVRCISESIEGKKY-LVVLDDVWTDDYTKWEPFQRCSANG----QC-------GNNILVTTHK 201 (406)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~----~~-------gs~IivTtR~ 201 (406)
+.++.--..++ -..|-+..+.++| +|.||.+...+++-.+.|...|.++ +. .+-||+||--
T Consensus 571 GaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 571 GAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred CCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 44443322222 2345556667888 8889999877877788888877653 22 3456666653
No 117
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0013 Score=62.11 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=91.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------HHHHHHHHHhcC-C------
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------RVAKAIIAALGC-E------ 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~~~i~~~l~~-~------ 141 (406)
.+++|.+..++.+.+.+... .-.+...++|+.|+||+++|..+.+..-. .....+ ..... +
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~-~~~~hPDl~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRL-EEGNHPDLLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccc-ccCCCCCEEEEec
Confidence 35789999999999988743 23578999999999999999766543210 000000 00000 0
Q ss_pred ----------------------CCCCCCHHHHHHHHHhh-----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcE
Q 038234 142 ----------------------TSNLGSLQSLVRCISES-----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNN 194 (406)
Q Consensus 142 ----------------------~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 194 (406)
.......+++ +.+.+. ..+++-++|+|++...+....+.+...+-.-++..-
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeE
Confidence 0000111222 223332 346677999999977766667777777754443333
Q ss_pred EEEecCChHHHHHh-ccCCccccCCCChHHHHHhhhhhc
Q 038234 195 ILVTTHKKTVARMM-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 195 IivTtR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
|++|+....+...+ +....+.+.+++.++..+.+.+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 44454444444443 347889999999999999888764
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.40 E-value=0.00021 Score=72.24 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=81.0
Q ss_pred CceecchhhHHHHHHHHh---cCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH----HHHHHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLL---SDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA----KAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~~i~~~l~~~~~~ 144 (406)
.+++|.+...+++.+.+. ... ..+....+-+.++|++|+|||+||+.+++.....+. ..+.....
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~----- 129 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV----- 129 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh-----
Confidence 467888776665554432 110 001233456889999999999999999876543111 01111110
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCCCcCc----------cCcc----hhhhccCC--CCCCcEEEEecCChHHHH-H
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVWTDDY----------TKWE----PFQRCSAN--GQCGNNILVTTHKKTVAR-M 207 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----------~~~~----~l~~~l~~--~~~gs~IivTtR~~~v~~-~ 207 (406)
......+...+.......+.+|+||++..-.. ..+. .+...+.. ...+-.||.||....... .
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPA 209 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHH
Confidence 01223344444444556789999999943110 0111 11111211 122445566665543111 1
Q ss_pred h----ccCCccccCCCChHHHHHhhhhhc
Q 038234 208 M----ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 ~----~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+ .-...+.+...+.++-.++|....
T Consensus 210 l~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred HhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 1 125678888888888778777644
No 119
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.00027 Score=65.07 Aligned_cols=94 Identities=19% Similarity=0.117 Sum_probs=47.6
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh-----H--HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD-----F--RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDD 175 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~-----~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~ 175 (406)
.-+.++|++|+|||.||.++.+... + --..+++..+.... ...........+ .+.=||||||+....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~-~~~~~~~~l~~l-----~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR-RELQLESAIAKL-----DKFDLLILDDLAYVT 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH-hCCcHHHHHHHH-----hcCCEEEEecccccc
Confidence 3589999999999999988865321 1 00111222221110 111222222222 234599999995443
Q ss_pred ccCcc--hhhhccCCCCCCcEEEEecCCh
Q 038234 176 YTKWE--PFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 176 ~~~~~--~l~~~l~~~~~gs~IivTtR~~ 202 (406)
...|. .+...+...-.+..+||||...
T Consensus 181 ~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 181 KDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 33332 2333333211123688888764
No 120
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.39 E-value=0.00015 Score=71.27 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=82.3
Q ss_pred ceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
++.|.+..++++.+.+...-.. +-...+.+.++|++|+|||+||+++++.....+..-....+..... ....
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~-Ge~~ 262 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL-GDGP 262 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc-chHH
Confidence 4568888888887776421100 1234567889999999999999999986543111000000000000 0111
Q ss_pred HHHHHHHHhhccCcceeEEeeCCCCcC------ccC--------cchhhhccCC--CCCCcEEEEecCChHHHHH-h---
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVWTDD------YTK--------WEPFQRCSAN--GQCGNNILVTTHKKTVARM-M--- 208 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~--------~~~l~~~l~~--~~~gs~IivTtR~~~v~~~-~--- 208 (406)
..+...+.....+.+.+|+||++..-- ... ...+...+.. ...+..||+||...+.... +
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRp 342 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRP 342 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccC
Confidence 222233333345678899999974210 000 0111111111 1235577777776543332 1
Q ss_pred -ccCCccccCCCChHHHHHhhhhh
Q 038234 209 -ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 209 -~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.-...+.+...+.++..++|...
T Consensus 343 GRfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 343 GRIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred CeeEEEEEeCCCCHHHHHHHHHHH
Confidence 11557788888888888887753
No 121
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0011 Score=60.30 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=50.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDD 170 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 170 (406)
...+.++|.+|+|||+||.++++.... ++...+-.... ....+...+... +. +.=||||||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~---~~~~~~~~~l~~----l~-~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS---NSETSEEQLLND----LS-NVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh---hccccHHHHHHH----hc-cCCEEEEeC
Confidence 357899999999999999988876432 22222222211 111122223222 33 345899999
Q ss_pred CCCcCccCcch--hhhccCC-CCCCcEEEEecCC
Q 038234 171 VWTDDYTKWEP--FQRCSAN-GQCGNNILVTTHK 201 (406)
Q Consensus 171 vw~~~~~~~~~--l~~~l~~-~~~gs~IivTtR~ 201 (406)
+.......|.. +...+.. ....-.+||||-.
T Consensus 171 ig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 171 IGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 97655455553 3333321 1223457777764
No 122
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.00089 Score=63.90 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=90.7
Q ss_pred eec-chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC-
Q 038234 77 ICG-RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET- 142 (406)
Q Consensus 77 ~vG-R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~- 142 (406)
++| -+.-++.+.+.+.. +.-.+...++|+.|+|||++|..+.+..-. .....+...-..+.
T Consensus 7 i~~~q~~~~~~L~~~~~~-----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAK-----NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHhhHHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 556 55566777777754 234667799999999999999877543210 11111111000000
Q ss_pred -----CCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccC
Q 038234 143 -----SNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-EST 211 (406)
Q Consensus 143 -----~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~ 211 (406)
......+++...+... ..+++-++|+|++...+....+.+...+..-..++.+|++|.+. .+...+ +..
T Consensus 82 ~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc 161 (329)
T PRK08058 82 LVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRC 161 (329)
T ss_pred EeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhc
Confidence 0112233443333221 34566689999997766666677777787666677777777653 333333 347
Q ss_pred CccccCCCChHHHHHhhhhh
Q 038234 212 NFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~ 231 (406)
..+++.+++.++....+.+.
T Consensus 162 ~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 162 QVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeeeCCCCCHHHHHHHHHHc
Confidence 88999999999998888764
No 123
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00016 Score=68.69 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=41.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+++|.++.++++++++.....+.....+++.++|++|+||||||..+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976543223456889999999999999999887654
No 124
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.38 E-value=0.00085 Score=71.98 Aligned_cols=126 Identities=14% Similarity=0.205 Sum_probs=70.0
Q ss_pred CceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHH-HHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKA-IIAALG 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~-i~~~l~ 139 (406)
..++|.+..++.+...+.... ...+.+..++.++|+.|+|||+||+.+++.... .+... ....+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~Li 647 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLV 647 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHh
Confidence 368899999888888876321 001233457889999999999999988764310 11111 112222
Q ss_pred CCCCCCCCHHHHHHHHHhhccCc-ceeEEeeCCCCcCccCcchhhhccCCC-----------CCCcEEEEecCC
Q 038234 140 CETSNLGSLQSLVRCISESIEGK-KYLVVLDDVWTDDYTKWEPFQRCSANG-----------QCGNNILVTTHK 201 (406)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 201 (406)
+..+.....+. ...+.+.+..+ .-+|+||++...+...++.+...+..+ -..+.||+||..
T Consensus 648 G~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 648 GAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 22221111111 01122222222 359999999766666666666665432 122347778775
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.36 E-value=0.00039 Score=74.34 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=72.1
Q ss_pred CceecchhhHHHHHHHHhcC---CCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh----H-------HHHH-HHHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSD---SSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD----F-------RVAK-AIIAALG 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~-------~~~~-~i~~~l~ 139 (406)
..++|.+..++.+.+.+... ....+.+..++.++|++|+|||.||+.+.+... . .+.. .-...+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 46889999999998887532 111134566889999999999999976654321 1 1110 0111121
Q ss_pred CCCCCCC---CHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCCC-----------CCcEEEEecCC
Q 038234 140 CETSNLG---SLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQ-----------CGNNILVTTHK 201 (406)
Q Consensus 140 ~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 201 (406)
+..+... ....+...+++ ....+|+||++...+...++.|...+..+. ..+.||+||..
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 1211111 11123333332 345699999997767666777766665432 35667777765
No 126
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.00094 Score=63.51 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=79.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC----C----CCCCHHHHHHH---HH
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET----S----NLGSLQSLVRC---IS 156 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~----~----~~~~~~~~~~~---l~ 156 (406)
.-.+.+.++|+.|+|||++|..+++..-. ..-+.+...-.++. + .....+++... +.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 34667889999999999999877654211 11111111111000 0 11223333332 22
Q ss_pred hh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccCCccccCCCChHHHHHhhhhh
Q 038234 157 ES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 157 ~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.. ..+++-++|+|++...+....+.+...+-.-..++.+|++|.+. .+...+ +....+.+.+++.+++.+.+.+.
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 11 23445566789998888777888888876655677777777764 344332 34677999999999998888764
No 127
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.0004 Score=67.96 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=71.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQ 183 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~ 183 (406)
++.|.|+-++||||+++.+....... .+.-.............+....+...-..++.+|+||.|+.. ..|....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~~l 113 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWERAL 113 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHHHH
Confidence 99999999999999996655443221 000000000000111122222222222237789999999554 5788877
Q ss_pred hccCCCCCCcEEEEecCChHHHHH------hccCCccccCCCChHHHHHh
Q 038234 184 RCSANGQCGNNILVTTHKKTVARM------MESTNFISIKELSTQECWSL 227 (406)
Q Consensus 184 ~~l~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~~a~~L 227 (406)
..+.+.++. +|++|+-+..+... .+....+++.||+..|-..+
T Consensus 114 k~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 114 KYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred HHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 777776655 88888887644332 13367889999999987653
No 128
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.0008 Score=54.80 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..+.|+|++|+||||+++.++....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999998887643
No 129
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.32 E-value=0.00067 Score=63.85 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=62.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCC
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~ 147 (406)
++........+++..-.. .+..+-+.|+|..|+|||.||.++++.... .+...+...... .+
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~-----~~ 207 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD-----GS 207 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----Cc
Confidence 344444445555553221 123467899999999999999998876432 333333333221 12
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCccCcch--hhhcc-CCC-CCCcEEEEecCC
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEP--FQRCS-ANG-QCGNNILVTTHK 201 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~IivTtR~ 201 (406)
.....+.+ .+-=||||||+.......|.. +...+ ... ..+-.+|+||-.
T Consensus 208 ~~~~l~~l-----~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 208 VKEKIDAV-----KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHHHHh-----cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 22222222 245699999997666667753 33333 222 235568888875
No 130
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00031 Score=69.87 Aligned_cols=153 Identities=12% Similarity=0.188 Sum_probs=95.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~ 142 (406)
++++|-+.-+..|.+.+... .-.+-....|+-|+||||+|+-+++..-. ..-+.|...-..+.
T Consensus 16 ~evvGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 35799999999999988753 23455678999999999999877653211 11111111100000
Q ss_pred -----CCCCCHHH---HHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccC
Q 038234 143 -----SNLGSLQS---LVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MEST 211 (406)
Q Consensus 143 -----~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~ 211 (406)
.....+++ +.+...-. ..+|-=..|+|.|+-.....|+.+...+-.-...-..|+.|.+ ..+... .+..
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRc 170 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRC 170 (515)
T ss_pred hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcc
Confidence 01122233 33222222 2355558999999766667888888887655555565555554 444433 3457
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.|.+..++.++-...+...+
T Consensus 171 q~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 171 QRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred ccccccCCCHHHHHHHHHHHH
Confidence 889999999999888888766
No 131
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.00097 Score=64.39 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=95.6
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------------HHHHH
Q 038234 73 DESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-------------------RVAKA 133 (406)
Q Consensus 73 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~~~ 133 (406)
.+..++||+.+++.+.+++..... ......+-|.|-+|.|||.+...++.+... .++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 346789999999999999986654 455678899999999999999988877543 55666
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHhhccCc--ceeEEeeCCCCcCccCcchhhhcc--CCCCCCcEEEEec-CC------h
Q 038234 134 IIAALGCETSNLGSLQSLVRCISESIEGK--KYLVVLDDVWTDDYTKWEPFQRCS--ANGQCGNNILVTT-HK------K 202 (406)
Q Consensus 134 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l--~~~~~gs~IivTt-R~------~ 202 (406)
|...+...........+....+.....+. .+|+|||....-....-..+...+ |.. +++++|+.- =+ +
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l-p~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL-PNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC-CcceeeeeeehhhhhHHHH
Confidence 66665222222222244555555555443 589999987432111111222222 222 244443322 11 1
Q ss_pred HHHHHh----ccCCccccCCCChHHHHHhhhhhc
Q 038234 203 TVARMM----ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 203 ~v~~~~----~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-+.+.. .....+...|-+.++..++|..+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111 125677888999999999998876
No 132
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00025 Score=64.93 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+.|+|++|+|||+||.++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 446899999999999999887654
No 133
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00023 Score=64.79 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+.++|.+|+|||+||.++++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999888764
No 134
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.28 E-value=0.00012 Score=63.30 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=46.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTD 174 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~ 174 (406)
..-+.++|.+|+|||.||.++.+.... --..+++..+..... ........+.+. +-=||||||+-..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~-~~~~~~~~~~l~-----~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRS-DGSYEELLKRLK-----RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHC-CTTHCHHHHHHH-----TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccc-ccchhhhcCccc-----cccEeccccccee
Confidence 456999999999999999887664321 001223333332211 122222333222 2358899999655
Q ss_pred CccCcch--hhhccCCC-CCCcEEEEecCCh
Q 038234 175 DYTKWEP--FQRCSANG-QCGNNILVTTHKK 202 (406)
Q Consensus 175 ~~~~~~~--l~~~l~~~-~~gs~IivTtR~~ 202 (406)
....|.. +...+... .++ .+||||...
T Consensus 121 ~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 121 PLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp ---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred eecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 4334432 22222211 223 578888753
No 135
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0011 Score=68.69 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----HHH-------HHHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----RVA-------KAIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~-------~~i~~~l~~~~~ 143 (406)
+.++||++|+.++++.|..... +. . .++|.+|||||++|.-++.+.-. ..+ -++. .+.....
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--NN--P--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-~LvAGak 242 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--NN--P--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-SLVAGAK 242 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--CC--C--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-HHhcccc
Confidence 4689999999999999986532 22 2 37899999999988666554221 110 0011 1111111
Q ss_pred CCCCHHHH-HHHHHhhccCcceeEEeeCCCCcC---------ccCcchhhhccCCCCCCcEEEEecCChHHHHHh-----
Q 038234 144 NLGSLQSL-VRCISESIEGKKYLVVLDDVWTDD---------YTKWEPFQRCSANGQCGNNILVTTHKKTVARMM----- 208 (406)
Q Consensus 144 ~~~~~~~~-~~~l~~~l~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~----- 208 (406)
-..+.++. ...+.+.-+.++..|++|.++.-- .+.-+.++..|..+ .--.|=.||-++ .-+.+
T Consensus 243 yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~E-YRk~iEKD~A 320 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDE-YRKYIEKDAA 320 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHH-HHHHhhhchH
Confidence 11233333 333334434558999999885310 11222233333322 122344555443 22222
Q ss_pred --ccCCccccCCCChHHHHHhhhhhc
Q 038234 209 --ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 209 --~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..-+.+.++..+.+++..+++-..
T Consensus 321 L~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 321 LERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 236788999999999999986543
No 136
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.26 E-value=0.0011 Score=56.50 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=76.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCC----C
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCET----S 143 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~----~ 143 (406)
|-+...+.|.+.+..+ .-.+.+.++|..|+||+++|..+.+..-. ...+.+......+. +
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4455667777777643 33557899999999999999877653211 11121111111110 0
Q ss_pred C----CCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHHh-ccCC
Q 038234 144 N----LGSLQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARMM-ESTN 212 (406)
Q Consensus 144 ~----~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~~ 212 (406)
. .-..+++. .+.+.+ .++.=++|+||+...+....+.+...+-.-..++.+|++|.+.. +...+ +...
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred ccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 1 12344444 333333 24566899999988887888888888877677888888888753 33332 3344
Q ss_pred ccccCCC
Q 038234 213 FISIKEL 219 (406)
Q Consensus 213 ~~~l~~L 219 (406)
.+.+.+|
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 5555544
No 137
>PRK09183 transposase/IS protein; Provisional
Probab=97.25 E-value=0.00081 Score=61.84 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=19.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+.|+|++|+|||+||..+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346789999999999999988543
No 138
>PRK10536 hypothetical protein; Provisional
Probab=97.24 E-value=0.0021 Score=58.23 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=33.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+.++......++.+|.. ..++.+.|.+|.|||+||.++..
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHH
Confidence 456788888888888863 23899999999999999977654
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.23 E-value=0.00078 Score=65.83 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=36.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888899999998874 2367889999999999999887654
No 140
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.22 E-value=0.0017 Score=61.26 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------HHHHHHHHHhc
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------RVAKAIIAALG 139 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~~~~i~~~l~ 139 (406)
++.+.+|+.++..+..++.... ..-+..|.|+|-.|.|||.+.+++++.... .++..|+..+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhc
Confidence 4567899999999999887653 223556699999999999999999988732 55666777764
Q ss_pred CCCCCC-------CCHHHHHHHHHh--hcc--CcceeEEeeCCC
Q 038234 140 CETSNL-------GSLQSLVRCISE--SIE--GKKYLVVLDDVW 172 (406)
Q Consensus 140 ~~~~~~-------~~~~~~~~~l~~--~l~--~kr~LlVlDdvw 172 (406)
....+. .+..+.+..+.+ ... ++.++||||++.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD 125 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH
Confidence 221111 112223333333 122 568999999994
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.21 E-value=0.00076 Score=72.52 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=72.1
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHH-HHHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAK-AIIAALG 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~-~i~~~l~ 139 (406)
..++|.+..++.+.+.+..... ..+.+..++.++|++|+|||++|+.+...... .+.. .....+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~ 644 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLI 644 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhc
Confidence 4688999999999888865321 01234567889999999999999988764210 1111 0111221
Q ss_pred CCCCCCC---CHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCC-----------CCCcEEEEecCC
Q 038234 140 CETSNLG---SLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANG-----------QCGNNILVTTHK 201 (406)
Q Consensus 140 ~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 201 (406)
+..+... ....+...++. ....+|+||++...+...++.|...+..+ -..+.||+||..
T Consensus 645 g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 645 GAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 2111111 11122222222 22348999999877777777777766432 123457777765
No 142
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.16 E-value=0.00031 Score=56.45 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998863
No 143
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.14 E-value=0.00051 Score=72.67 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=82.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH-------HHHHHHhcCCC--CCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA-------KAIIAALGCET--SNL 145 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------~~i~~~l~~~~--~~~ 145 (406)
.+.+|.++-.+.++++|............++.++|++|+||||+|+.++......+. .+. ..+.... ...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~-~~i~g~~~~~~g 400 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE-AEIRGHRRTYIG 400 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCH-HHhccchhccCC
Confidence 467899999999988776321111233558999999999999999988764322110 000 0010000 000
Q ss_pred CCHHHHHHHHHhhccCcceeEEeeCCCCcCccC----cchhhhccCCC---------------CCCcEEEEecCChHHHH
Q 038234 146 GSLQSLVRCISESIEGKKYLVVLDDVWTDDYTK----WEPFQRCSANG---------------QCGNNILVTTHKKTVAR 206 (406)
Q Consensus 146 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~IivTtR~~~v~~ 206 (406)
.....+.+.+...- ...-+|+||.+....... .+.+...+... -++.-+|.|+..-.+..
T Consensus 401 ~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~ 479 (784)
T PRK10787 401 SMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPA 479 (784)
T ss_pred CCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCH
Confidence 01112333333322 234578999985443221 13344433221 12333444554322211
Q ss_pred -HhccCCccccCCCChHHHHHhhhhhc
Q 038234 207 -MMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 207 -~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
......++.+.+++.++-.++.++..
T Consensus 480 aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 480 PLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 12335788999999999877766544
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.11 E-value=0.0014 Score=69.74 Aligned_cols=155 Identities=12% Similarity=0.137 Sum_probs=79.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH-------HHHHHHhcCCCC--CC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA-------KAIIAALGCETS--NL 145 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------~~i~~~l~~~~~--~~ 145 (406)
.+.+|.+.-++.+.+++......+.....++.++|++|+|||++|+.+++.....+. ... ..+..... ..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~-~~i~g~~~~~~g 398 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDE-AEIRGHRRTYVG 398 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccH-HHHcCCCCceeC
Confidence 357788888888887654221101223457999999999999999999876532110 000 11111100 01
Q ss_pred CCHHHHHHHHHhhccCcceeEEeeCCCCcCccC----cchhhhccCC--------C-------CCCcEEEEecCChH-HH
Q 038234 146 GSLQSLVRCISESIEGKKYLVVLDDVWTDDYTK----WEPFQRCSAN--------G-------QCGNNILVTTHKKT-VA 205 (406)
Q Consensus 146 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~----~~~l~~~l~~--------~-------~~gs~IivTtR~~~-v~ 205 (406)
.....+.+.+.... .++-+|+||.+....... .+.+...+.. . .++..+|.||.... +.
T Consensus 399 ~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~ 477 (775)
T TIGR00763 399 AMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIP 477 (775)
T ss_pred CCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCC
Confidence 11223333444332 233478999985543211 1222222211 0 12233344444321 11
Q ss_pred -HHhccCCccccCCCChHHHHHhhhhh
Q 038234 206 -RMMESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 206 -~~~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.......++++.+++.++-..++.+.
T Consensus 478 ~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 478 RPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred HHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 11233568899999998887777654
No 145
>PRK06696 uridine kinase; Validated
Probab=97.10 E-value=0.00061 Score=61.26 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=35.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36677888888887532 456889999999999999999887654
No 146
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.10 E-value=0.00084 Score=61.14 Aligned_cols=27 Identities=30% Similarity=0.055 Sum_probs=23.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
....++|+|++|+|||||++.+++...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 356889999999999999999998653
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.09 E-value=0.00096 Score=70.19 Aligned_cols=112 Identities=11% Similarity=0.163 Sum_probs=64.0
Q ss_pred CceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH--------HHH-HHHHHhcCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR--------VAK-AIIAALGCET 142 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~~-~i~~~l~~~~ 142 (406)
..++|-++.++.+.+.+.... ...+.+...+.++|++|+|||.||+.++...... +.. .....+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~ 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC
Confidence 457899999988888876321 1113445678999999999999999887754321 100 0112222221
Q ss_pred CCCCCHHHHHHHHHhhccC-cceeEEeeCCCCcCccCcchhhhccC
Q 038234 143 SNLGSLQSLVRCISESIEG-KKYLVVLDDVWTDDYTKWEPFQRCSA 187 (406)
Q Consensus 143 ~~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~~~~~~l~~~l~ 187 (406)
+.....+ ....+.+.+.. ...+|+||++...+.+.++.+...+.
T Consensus 538 ~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 538 PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1111100 00112222332 34699999997777666666666554
No 148
>PRK08118 topology modulation protein; Reviewed
Probab=97.03 E-value=0.00082 Score=57.48 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChHHH--HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDFRV--AKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
.|.|+|++|+||||||+.+++.....+ +..+....+ ....+.++....+.+.+.++.| |+|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~---w~~~~~~~~~~~~~~~~~~~~w--VidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN---WEGVPKEEQITVQNELVKEDEW--IIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC---CcCCCHHHHHHHHHHHhcCCCE--EEeCCc
Confidence 589999999999999999998754311 111111111 1112233455555555666654 778763
No 149
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.02 E-value=0.0032 Score=53.86 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=37.3
Q ss_pred HHHHhhccCcceeEEeeCCCC--cCccCcchhhhccCCCCCCcEEEEecCChHHHHHhc
Q 038234 153 RCISESIEGKKYLVVLDDVWT--DDYTKWEPFQRCSANGQCGNNILVTTHKKTVARMME 209 (406)
Q Consensus 153 ~~l~~~l~~kr~LlVlDdvw~--~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 209 (406)
-.|.+.+-+++-||+=|.--- +....|+.+.-.-.-+..|+-||++|.+..+...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 356677778899999984311 122355544332223456999999999998887764
No 150
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.02 E-value=0.0021 Score=60.37 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=28.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHH
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v 122 (406)
+|..+-.--+++|+ ++.+..|.+.|.+|.|||-||.+.
T Consensus 228 prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHH
Confidence 35555555567776 455899999999999999998543
No 151
>PF14516 AAA_35: AAA-like domain
Probab=96.99 E-value=0.041 Score=52.57 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=95.4
Q ss_pred cCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------------------H
Q 038234 72 IDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------------------R 129 (406)
Q Consensus 72 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------------~ 129 (406)
.+.+..|.|...-+++.+.|... ...+.|.|+-.+|||+|...+.+.... .
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHH
Confidence 34456788987777777777542 458899999999999999777654432 3
Q ss_pred HHHHHH----HHhcCCCC-------CCCCHHHHHHHHHhhc---cCcceeEEeeCCCCcCc--cCcchhhhccC----CC
Q 038234 130 VAKAII----AALGCETS-------NLGSLQSLVRCISESI---EGKKYLVVLDDVWTDDY--TKWEPFQRCSA----NG 189 (406)
Q Consensus 130 ~~~~i~----~~l~~~~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~--~~~~~l~~~l~----~~ 189 (406)
+++.+. .++..... ...........+.+.+ .+++.+|+||++..--. ...+.+...+. ..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 333333 33332211 0112223333343332 26899999999843211 11112222221 10
Q ss_pred C----CCc--EEEEecCChHHHHHh-----ccCCccccCCCChHHHHHhhhhhc-------------cccchhHHHHHHh
Q 038234 190 Q----CGN--NILVTTHKKTVARMM-----ESTNFISIKELSTQECWSLFKQES-------------SAKPCLLLQKLLG 245 (406)
Q Consensus 190 ~----~gs--~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~~-------------i~~~cPLai~~~g 245 (406)
. ... -|++.+......... .....+.|.+++.+|...|+.+.- ...+.|..+..++
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 111 222222111111111 125678999999999999988755 2233388888888
Q ss_pred hhhcch
Q 038234 246 VSCALK 251 (406)
Q Consensus 246 ~~L~~~ 251 (406)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 777553
No 152
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0042 Score=58.76 Aligned_cols=143 Identities=7% Similarity=0.014 Sum_probs=87.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-------CCC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE-------TSN 144 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~-------~~~ 144 (406)
-+.+.+.+.. +.-.+.+.++|+.|+||+++|..+++..-. ..-+.+...-.++ ...
T Consensus 11 ~~~l~~~~~~-----~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQ-----GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHHHHc-----CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 3455555553 233567889999999999999877653210 1111111111110 001
Q ss_pred CCCHHHHHH---HHHh-hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccCCccccCC
Q 038234 145 LGSLQSLVR---CISE-SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-ESTNFISIKE 218 (406)
Q Consensus 145 ~~~~~~~~~---~l~~-~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~ 218 (406)
....+++.. .+.. -..+++-++|+|++...+....+.+...+-.-..++.+|++|.+. .+...+ +....+.+.+
T Consensus 86 ~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~ 165 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHP 165 (325)
T ss_pred CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCC
Confidence 112333332 2221 124666788999998887777888888887666677777777664 444333 3467899999
Q ss_pred CChHHHHHhhhhh
Q 038234 219 LSTQECWSLFKQE 231 (406)
Q Consensus 219 L~~~~a~~Lf~~~ 231 (406)
++.++..+.+...
T Consensus 166 ~~~~~~~~~L~~~ 178 (325)
T PRK06871 166 PEEQQALDWLQAQ 178 (325)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998877764
No 153
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.001 Score=63.79 Aligned_cols=25 Identities=28% Similarity=0.034 Sum_probs=21.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.....|+|++|+||||||+++|+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Confidence 4567899999999999999999854
No 154
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0017 Score=58.43 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.-.++|+|..|.|||||...+....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 3367899999999999998776654
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.90 E-value=0.0013 Score=70.56 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=71.1
Q ss_pred CceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh---H--------HHH--HHHHHHh
Q 038234 75 SEICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKD---F--------RVA--KAIIAAL 138 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~--------~~~--~~i~~~l 138 (406)
..++|-+..++.+.+.+.... ...+.+...+.++|+.|+|||+||+.+.+... . .+. ..+ ..+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~-~~l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV-SKL 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH-HHh
Confidence 568899999999888775321 11134456678999999999999988776421 0 100 001 111
Q ss_pred cCCCCCCCCHHHHHHHHHhhccCcc-eeEEeeCCCCcCccCcchhhhccCCC-----------CCCcEEEEecCC
Q 038234 139 GCETSNLGSLQSLVRCISESIEGKK-YLVVLDDVWTDDYTKWEPFQRCSANG-----------QCGNNILVTTHK 201 (406)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 201 (406)
.+..+.....++ ...+.+.+..++ .+++||++...+.+.++.+...+..+ -..+.||+||..
T Consensus 588 ~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 588 IGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111111111100 112334444455 48999999877777777777766542 134566777765
No 156
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.88 E-value=0.00069 Score=55.96 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=59.5
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHH-HHHHH
Q 038234 78 CGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSL-VRCIS 156 (406)
Q Consensus 78 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~ 156 (406)
||.-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ........+.... .+.+.
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~----------~~~~~~~~~~~~~~~~~l~ 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGR----------ANGPFIVIDCASLPAELLE 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTT----------CCS-CCCCCHHCTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCc----------cCCCeEEechhhCcHHHHH
Confidence 466666777777665432 22345789999999999999988876432 0000000000000 11222
Q ss_pred hhccCcceeEEeeCCCCcCccCcchhhhccCC-CCCCcEEEEecCCh
Q 038234 157 ESIEGKKYLVVLDDVWTDDYTKWEPFQRCSAN-GQCGNNILVTTHKK 202 (406)
Q Consensus 157 ~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~ 202 (406)
. .+.--|+|+|+..-+......+...+.. .....++|.||...
T Consensus 67 ~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 Q---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp H---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred H---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 2 2555688999955444444445555542 24577999998853
No 157
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.84 E-value=0.0021 Score=56.55 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=24.3
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.+..+-...++.|.. ..++.+.|++|.|||.||.+..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAA 40 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHH
Confidence 345556666777762 4489999999999999996554
No 158
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.83 E-value=0.00087 Score=63.55 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=43.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-----ccCcceeEEeeCCC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISES-----IEGKKYLVVLDDVW 172 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdvw 172 (406)
-..+..++|||++|.|||.+|+++++.....+..--...+...... .+...+.+.+... -++++++|++|++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG-EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG-EPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC-cHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 3568899999999999999999999887653211111111111111 1122222222222 25789999999984
No 159
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0015 Score=59.80 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..-+.++|.+|+|||.||.++.+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH
Confidence 5578999999999999998887764
No 160
>PRK06921 hypothetical protein; Provisional
Probab=96.81 E-value=0.0032 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+.++|.+|+|||+||.++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999987753
No 161
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0013 Score=61.56 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=58.3
Q ss_pred eecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHH
Q 038234 77 ICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQ 149 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~ 149 (406)
+=|-++.+++|.+.+.-.-.. +-++++-|.++|++|.|||-||++|+++....|.+-....+-.... .+-.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYi--GEGa 230 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYI--GEGA 230 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHh--ccch
Confidence 447888888887776432211 2466788999999999999999999999775332221111111000 1112
Q ss_pred HHHHHHHhhcc-CcceeEEeeCCC
Q 038234 150 SLVRCISESIE-GKKYLVVLDDVW 172 (406)
Q Consensus 150 ~~~~~l~~~l~-~kr~LlVlDdvw 172 (406)
.+++.+.+.-+ ..++.|++|.+.
T Consensus 231 RlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 231 RLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred HHHHHHHHHHhhcCCeEEEEechh
Confidence 34555554443 568899999884
No 162
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.78 E-value=0.0025 Score=61.37 Aligned_cols=24 Identities=25% Similarity=0.022 Sum_probs=21.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...++|+|++|+|||||++.+++.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHh
Confidence 456899999999999999999886
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.007 Score=54.30 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=86.0
Q ss_pred CceecchhhHHH---HHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHH-----HHHHHHHhcCCCCCCC
Q 038234 75 SEICGRDYKKNE---LLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRV-----AKAIIAALGCETSNLG 146 (406)
Q Consensus 75 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----~~~i~~~l~~~~~~~~ 146 (406)
++++|.++...+ |++.|.....=++-.++-|..+|++|.|||-+|+++++..++-+ ..-|-+.++ +
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG------d 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG------D 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh------h
Confidence 467887765443 55666543322345578899999999999999999999887622 222222222 1
Q ss_pred CHHHHHHHHHhhccCcceeEEeeCCCCcC------------ccCcchhhhccC--CCCCCcEEEEecCChHHHHHh-cc-
Q 038234 147 SLQSLVRCISESIEGKKYLVVLDDVWTDD------------YTKWEPFQRCSA--NGQCGNNILVTTHKKTVARMM-ES- 210 (406)
Q Consensus 147 ~~~~~~~~l~~~l~~kr~LlVlDdvw~~~------------~~~~~~l~~~l~--~~~~gs~IivTtR~~~v~~~~-~~- 210 (406)
....+-....+.-+.-+|.+.||.+.--- .+..+.+..-+. +.+.|-..|-.|-+..+.... ..
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence 11222222333334568999999763210 011122333332 234466666666665554321 11
Q ss_pred -CCccccCCCChHHHHHhhhhhc
Q 038234 211 -TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 211 -~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..-++...-+.+|-..++...+
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHH
Confidence 4566777777788877777654
No 164
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.73 E-value=0.0021 Score=64.27 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=68.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc--c
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY--T 177 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--~ 177 (406)
...+-|.++|++|+|||.+|+++++.....+..--...+...... .+...+.+.+...-...+++|++|++..--. .
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~ 335 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE 335 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc
Confidence 346778999999999999999998875431110000011111000 1222333333333345789999999842100 0
Q ss_pred C-----c-----chhhhccCCCCCCcEEEEecCChHH-HHHh----ccCCccccCCCChHHHHHhhhhh
Q 038234 178 K-----W-----EPFQRCSANGQCGNNILVTTHKKTV-ARMM----ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 178 ~-----~-----~~l~~~l~~~~~gs~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
. . ..+...+.....+--||.||.+... -..+ .-...+.++.-+.++-.++|...
T Consensus 336 ~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~ 404 (489)
T CHL00195 336 SKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIH 404 (489)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 0 0 1112222222334445567665432 1111 12567788888888888887754
No 165
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.72 E-value=0.0027 Score=67.42 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.+...+.|.+.+.-.... +-...+-+.++|++|+|||+||+++++.....+..--...+.... -..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~-vGes 531 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW-VGES 531 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc-cCcH
Confidence 35678777777776655311000 123355688999999999999999998754321100000000000 0112
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcC------ccC------cchhhhccCC--CCCCcEEEEecCChHHHHH-h----
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDD------YTK------WEPFQRCSAN--GQCGNNILVTTHKKTVARM-M---- 208 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~------~~~l~~~l~~--~~~gs~IivTtR~~~v~~~-~---- 208 (406)
...+...+...-...+.+|+||++..-- ... ...+...+.. ...+.-||.||...+.... +
T Consensus 532 e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpg 611 (733)
T TIGR01243 532 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPG 611 (733)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCC
Confidence 2233333444445678999999984310 000 1122222332 1234455666655443221 1
Q ss_pred ccCCccccCCCChHHHHHhhhhh
Q 038234 209 ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 209 ~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.-...+.+...+.++-.++|+..
T Consensus 612 Rfd~~i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 612 RFDRLILVPPPDEEARKEIFKIH 634 (733)
T ss_pred ccceEEEeCCcCHHHHHHHHHHH
Confidence 12567788888888888887643
No 166
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.71 E-value=0.0011 Score=66.54 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=39.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+++|.++.++++++.|..........-+++.++|++|+|||+||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 57899999999999884322111345679999999999999999887653
No 167
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.011 Score=56.31 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=53.1
Q ss_pred CcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccCCccccCCCChHHHHHhhhhh
Q 038234 161 GKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 161 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
+++-++|+|++...+....+.+...+-.-.+++.+|++|.+ ..+... .+....+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 55668899999888888888888888766667766665555 444433 334678899999999998888764
No 168
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.71 E-value=0.0015 Score=62.12 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+.++|.+|+|||+||.++++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 569999999999999999887753
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.68 E-value=0.0012 Score=70.10 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=79.7
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.+..++++.+.+...-. -+-...+.+.++|++|+|||+||+.+++.....+..--...+.... ....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~-~g~~ 256 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY-YGES 256 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc-ccHH
Confidence 3577999988888777642100 0123456788999999999999999987643211000000000000 0011
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCc------c-----CcchhhhccCCC-CCCcEEEE-ecCChH-HHHHhc----
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDY------T-----KWEPFQRCSANG-QCGNNILV-TTHKKT-VARMME---- 209 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~------~-----~~~~l~~~l~~~-~~gs~Iiv-TtR~~~-v~~~~~---- 209 (406)
...+...+.....+.+.+|+||++..... . ....+...+... ..+..+++ ||.... +-..+.
T Consensus 257 ~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gR 336 (733)
T TIGR01243 257 EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGR 336 (733)
T ss_pred HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchh
Confidence 23344444444556778999999843110 0 011233333221 22334444 444332 111111
Q ss_pred cCCccccCCCChHHHHHhhhh
Q 038234 210 STNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
-...+.+...+.++-.+++..
T Consensus 337 fd~~i~i~~P~~~~R~~Il~~ 357 (733)
T TIGR01243 337 FDREIVIRVPDKRARKEILKV 357 (733)
T ss_pred ccEEEEeCCcCHHHHHHHHHH
Confidence 134567777788877777663
No 170
>PHA02244 ATPase-like protein
Probab=96.66 E-value=0.0054 Score=58.50 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
-|.|+|++|+|||+||++++...
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999988654
No 171
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0017 Score=57.20 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=41.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChHH---------HHHHHH-----HHh--cCCCCCCCCHHHHHHHHHhhccCcc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDFR---------VAKAII-----AAL--GCETSNLGSLQSLVRCISESIEGKK 163 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------~~~~i~-----~~l--~~~~~~~~~~~~~~~~l~~~l~~kr 163 (406)
+.+.+|+|.|.+|.||||+|+.++...... +.+..- ... ....+...+.+-+.+.|..++.|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 446899999999999999999998876531 111100 000 1112234566777788888888877
No 172
>PRK07667 uridine kinase; Provisional
Probab=96.66 E-value=0.0025 Score=55.93 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++.+.+.+... .+...+|+|.|.+|+||||+|..+...
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666544 344589999999999999999887654
No 173
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.022 Score=53.86 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=87.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh-----H------HHHHHHHHHhcCCC----C----
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD-----F------RVAKAIIAALGCET----S---- 143 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-----~------~~~~~i~~~l~~~~----~---- 143 (406)
..+++.+.+.. +.-.+.+.++|+.|+||+++|..+.+..- . ..-+.+.....++. +
T Consensus 11 ~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 11 VWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 34555555543 23466889999999999999987754211 0 11111111111110 0
Q ss_pred CCCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccCCcccc
Q 038234 144 NLGSLQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-ESTNFISI 216 (406)
Q Consensus 144 ~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l 216 (406)
.....+++.. +.+.+ .+++-++|+|++...+....+.+...+-.-..++.+|++|.+. .+...+ +....+.+
T Consensus 86 ~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 86 KSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred CcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 1122333332 22222 3455689999998877778888888887666677777766654 444443 44778899
Q ss_pred CCCChHHHHHhhhhh
Q 038234 217 KELSTQECWSLFKQE 231 (406)
Q Consensus 217 ~~L~~~~a~~Lf~~~ 231 (406)
.+++.+++.+.+...
T Consensus 165 ~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 165 TPPSTAQAMQWLKGQ 179 (319)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999998888764
No 174
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0073 Score=58.12 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999877754
No 175
>PRK07261 topology modulation protein; Provisional
Probab=96.57 E-value=0.0015 Score=56.20 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=37.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChHHH-HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDFRV-AKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDV 171 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 171 (406)
.|.|+|++|+||||||+.+........ ..+.+. .. ......+.++....+...+.+.+ .|+|+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~--wIidg~ 66 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH-FQ-PNWQERDDDDMIADISNFLLKHD--WIIDGN 66 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE-ec-cccccCCHHHHHHHHHHHHhCCC--EEEcCc
Confidence 589999999999999998876532210 000000 00 01112334566667777777666 577876
No 176
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.55 E-value=0.0099 Score=52.92 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHhhccCcceeEEeeCCCCc-CccCcchhhhccCC--CCCCcEEEEecCChHHHHHhc
Q 038234 153 RCISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSAN--GQCGNNILVTTHKKTVARMME 209 (406)
Q Consensus 153 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~IivTtR~~~v~~~~~ 209 (406)
-.+.+.|-.++-+|+-|+---. |...-+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3567777888899999965211 11111223333322 234778999999999998753
No 177
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.51 E-value=0.0056 Score=58.93 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=60.6
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH---------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEee
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF---------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLD 169 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlD 169 (406)
...++-+-|||..|.|||.|.-.+|+.... .+..++-..+..-.........+ .+.+.++..||.||
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~v----a~~l~~~~~lLcfD 134 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQV----ADELAKESRLLCFD 134 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHH----HHHHHhcCCEEEEe
Confidence 345778999999999999999999987654 44444444444333223333333 34445677799999
Q ss_pred CCCCcCccCcchhhhccCC-CCCCcEEEEecCChHH
Q 038234 170 DVWTDDYTKWEPFQRCSAN-GQCGNNILVTTHKKTV 204 (406)
Q Consensus 170 dvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR~~~v 204 (406)
...-.|..+--.+...+.. ...| .|||+|.|...
T Consensus 135 EF~V~DiaDAmil~rLf~~l~~~g-vvlVaTSN~~P 169 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALFKRG-VVLVATSNRPP 169 (362)
T ss_pred eeeccchhHHHHHHHHHHHHHHCC-CEEEecCCCCh
Confidence 8855543332223333332 2334 46666666443
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.50 E-value=0.0065 Score=53.36 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=39.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH------------------HHHHHHHHHhcCCCC---CCCCHHHHH-HHHHhhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF------------------RVAKAIIAALGCETS---NLGSLQSLV-RCISESI 159 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~l 159 (406)
++++.++|+.|+||||.+.+++..... +.++.+.+.++-... ...+..++. +.+.+.-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 468999999999999977555443221 556666777664421 122333333 3333332
Q ss_pred cCcceeEEeeCC
Q 038234 160 EGKKYLVVLDDV 171 (406)
Q Consensus 160 ~~kr~LlVlDdv 171 (406)
..+.=++++|=.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 223347777754
No 179
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.49 E-value=0.0067 Score=55.94 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|.+.|.+|+|||+||+.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999863
No 180
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.0082 Score=57.06 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCC----CC-----------CCCCHHHH
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCE----TS-----------NLGSLQSL 151 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~----~~-----------~~~~~~~~ 151 (406)
.-.+.+.++|+.|+|||++|..+.+..-. ..-+.+......+ .+ .....+++
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34667889999999999999877653210 1111111100000 00 00123333
Q ss_pred HHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHh-ccCCccccCCCChHHH
Q 038234 152 VRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMM-ESTNFISIKELSTQEC 224 (406)
Q Consensus 152 ~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~a 224 (406)
.. +.+.+ .+++-++|+|++...+...-+.+...+.....++.+|++|.+. .+...+ .....+.+.+++.+++
T Consensus 99 R~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~ 177 (325)
T PRK08699 99 RE-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEA 177 (325)
T ss_pred HH-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHH
Confidence 33 22222 2444456678886666555556666665444456677777764 344333 3367889999999998
Q ss_pred HHhhhhh
Q 038234 225 WSLFKQE 231 (406)
Q Consensus 225 ~~Lf~~~ 231 (406)
.+.+.+.
T Consensus 178 ~~~L~~~ 184 (325)
T PRK08699 178 LAYLRER 184 (325)
T ss_pred HHHHHhc
Confidence 8877654
No 181
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.0053 Score=58.56 Aligned_cols=144 Identities=9% Similarity=0.034 Sum_probs=87.0
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC----C---
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET----S--- 143 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~----~--- 143 (406)
.-+++.+.+.. +.-.+.+.+.|+.|+||+++|..++...-- .--+.+.....++. +
T Consensus 10 ~~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (334)
T PRK07993 10 DYEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG 84 (334)
T ss_pred HHHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 34556666654 244678889999999999999876543210 11111111111100 0
Q ss_pred -CCCCHHHHHHHHHh----hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccCCcccc
Q 038234 144 -NLGSLQSLVRCISE----SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ESTNFISI 216 (406)
Q Consensus 144 -~~~~~~~~~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l 216 (406)
..-..+++...... -..+++-++|+|++...+...-+.+...+-.-..++.+|++|.+ ..+...+ +....+.+
T Consensus 85 ~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~ 164 (334)
T PRK07993 85 KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYL 164 (334)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccC
Confidence 11223333332221 12467779999999877777777888888666667777777765 4455443 44677899
Q ss_pred CCCChHHHHHhhhhh
Q 038234 217 KELSTQECWSLFKQE 231 (406)
Q Consensus 217 ~~L~~~~a~~Lf~~~ 231 (406)
.+++.+++...+.+.
T Consensus 165 ~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 165 APPPEQYALTWLSRE 179 (334)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999988877553
No 182
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0028 Score=54.60 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+..+|.+.|++|+||||+|+.+++..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999987654
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0078 Score=57.18 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH------------HHHHHHHHhcCC---
Q 038234 77 ICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR------------VAKAIIAALGCE--- 141 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------~~~~i~~~l~~~--- 141 (406)
++|-+....++..+..... ...+.+.++|++|+||||+|..+.+..... ....+...-..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 5677778888888887532 223469999999999999998887653210 000000000000
Q ss_pred --CCCCCC---HHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHhc-
Q 038234 142 --TSNLGS---LQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMME- 209 (406)
Q Consensus 142 --~~~~~~---~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~~- 209 (406)
..+... ..+.++.+.+.. .++.-++++|++...+.+.-+.+...+......+.+|++|.+ ..+...+.
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S 158 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS 158 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh
Confidence 011111 222333333322 256779999999766655556666666666667788877774 33333222
Q ss_pred cCCccccCCCCh
Q 038234 210 STNFISIKELST 221 (406)
Q Consensus 210 ~~~~~~l~~L~~ 221 (406)
....+.+.+.+.
T Consensus 159 Rc~~i~f~~~~~ 170 (325)
T COG0470 159 RCQRIRFKPPSR 170 (325)
T ss_pred cceeeecCCchH
Confidence 245566665333
No 184
>PRK13695 putative NTPase; Provisional
Probab=96.47 E-value=0.0015 Score=56.33 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987654
No 185
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.46 E-value=0.0021 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 186
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.42 E-value=0.0038 Score=63.53 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=25.2
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.+.-+++.++|++|.||||||..++++..
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC
Confidence 45578999999999999999999988754
No 187
>PRK08233 hypothetical protein; Provisional
Probab=96.42 E-value=0.0026 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+|+|.|.+|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999887654
No 188
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.41 E-value=0.0042 Score=60.79 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|++|.||||||+.+.--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc
Confidence 458999999999999999987653
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.0061 Score=58.33 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC-----hH---------------HHHHHHHHHhcCCC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK-----DF---------------RVAKAIIAALGCET 142 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----~~---------------~~~~~i~~~l~~~~ 142 (406)
...++++.+..-. ....+.|+|.+|+|||||++.+++.. .+ ++...+...+....
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3455777777542 24567999999999999998866532 11 55566655555443
Q ss_pred CCCCCHHH-----HHHHHHhh--ccCcceeEEeeCC
Q 038234 143 SNLGSLQS-----LVRCISES--IEGKKYLVVLDDV 171 (406)
Q Consensus 143 ~~~~~~~~-----~~~~l~~~--l~~kr~LlVlDdv 171 (406)
.+...... ....+.+. -.|++.+||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 22221111 11111222 2589999999998
No 190
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.37 E-value=0.0026 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999887653
No 191
>PRK04296 thymidine kinase; Provisional
Probab=96.35 E-value=0.0031 Score=55.17 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=53.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH-----H----------HHHHHHHHhcCCCCC--CCCHHHHHHHHHhhccCccee
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF-----R----------VAKAIIAALGCETSN--LGSLQSLVRCISESIEGKKYL 165 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~-----~----------~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~kr~L 165 (406)
.++.|+|..|.||||+|..+..+... - ....+...++..... .....++...+.+ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 47889999999999999776654321 0 011122222211111 1233445555554 3345559
Q ss_pred EEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH
Q 038234 166 VVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT 203 (406)
Q Consensus 166 lVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 203 (406)
||+|.+..-+.++...+...+ ...|..||+|.++.+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred EEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 999999543222122222222 234778999998743
No 192
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0094 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 193
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.33 E-value=0.0041 Score=54.68 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhc---------c
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETSNLGSLQSLVRCISESI---------E 160 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---------~ 160 (406)
-+++.|.|.+|.|||+++..+.+.... +-...+....+.. ... +...+.... .
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~---a~T---i~~~l~~~~~~~~~~~~~~ 91 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE---AQT---IHSFLYRIPNGDDEGRPEL 91 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS----EEE---HHHHTTEECCEECCSSCC-
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc---hhh---HHHHHhcCCcccccccccC
Confidence 457889999999999998876543322 2222233332211 011 111111111 1
Q ss_pred CcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecC
Q 038234 161 GKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTH 200 (406)
Q Consensus 161 ~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR 200 (406)
.++-+||+|++.-.+...+..+....+. .|+++|+.-=
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 3346999999965554455555555444 3667776543
No 194
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.015 Score=49.93 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=56.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH----------HHH----HHHHHHhc--CCCCCC--CCH--------HHHHHHH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF----------RVA----KAIIAALG--CETSNL--GSL--------QSLVRCI 155 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~----~~i~~~l~--~~~~~~--~~~--------~~~~~~l 155 (406)
..+++|+|..|.|||||.+.++..... .+. ......+. .+.... .+. +...-.+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 558999999999999999999876432 110 01111111 011000 011 1111234
Q ss_pred HhhccCcceeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 156 SESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 156 ~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
...+-.++-+++||+.... |......+...+.....+..||++|.+......
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 5556677889999987431 111222333333222235678888888766654
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.022 Score=53.85 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=83.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH---------HHHHHHHHHhcCC------CCCC--
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF---------RVAKAIIAALGCE------TSNL-- 145 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------~~~~~i~~~l~~~------~~~~-- 145 (406)
..+.+...+.. +.-.+.+.++|+.|+||+++|..+++..-. .-...+...-.++ .++.
T Consensus 12 ~~~~l~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 12 AYDQTVAALDA-----GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 34555665543 233567899999999999999777653210 1111111000000 0000
Q ss_pred ------CCHHHHHHHHHhh-----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHHh-ccCC
Q 038234 146 ------GSLQSLVRCISES-----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARMM-ESTN 212 (406)
Q Consensus 146 ------~~~~~~~~~l~~~-----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~ 212 (406)
...+++. .+.+. ..+++-++|+|++...+...-+.+...+-.-..++.+|++|.+ ..+...+ +...
T Consensus 87 ~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 87 DKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred ccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 1122222 22222 2356679999999777666667777777665567777766664 4444333 3467
Q ss_pred ccccCCCChHHHHHhhhhh
Q 038234 213 FISIKELSTQECWSLFKQE 231 (406)
Q Consensus 213 ~~~l~~L~~~~a~~Lf~~~ 231 (406)
.+.+.+++.+++.+.+.+.
T Consensus 166 ~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc
Confidence 7889999999988877654
No 196
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.32 E-value=0.0033 Score=55.89 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999887643
No 197
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.31 E-value=0.0033 Score=55.83 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988754
No 198
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.29 E-value=0.0035 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999988543
No 199
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0036 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.301 Sum_probs=22.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..-|.|.|++|+||||+++.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 56789999999999999998876543
No 200
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.01 Score=59.83 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=80.0
Q ss_pred ceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHH----HHHHhcCCCCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKA----IIAALGCETSN 144 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~----i~~~l~~~~~~ 144 (406)
++=|.++-..+|.+.+.-.... +-.+.+-|..+|+||.|||++|+++++.....|+.- ++...-
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v----- 509 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV----- 509 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc-----
Confidence 3445666555555444321110 235678899999999999999999999876543322 111111
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCCCcCc-----------cCcchhhhccCCCCCC-cEEEE--ecCChHHHHH-hc
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVWTDDY-----------TKWEPFQRCSANGQCG-NNILV--TTHKKTVARM-ME 209 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~~~~g-s~Iiv--TtR~~~v~~~-~~ 209 (406)
..+...+.+..++.-+--+++|.||.+..-.. ....++..-+...... ..+|+ |.|...+-.. +.
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlR 589 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLR 589 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcC
Confidence 12333444444444445678999998743110 0111222222222222 23333 3333332222 22
Q ss_pred ---cCCccccCCCChHHHHHhhhhhc
Q 038234 210 ---STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ---~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-..++-++.-+.+--.++|+.++
T Consensus 590 PGRlD~iiyVplPD~~aR~~Ilk~~~ 615 (693)
T KOG0730|consen 590 PGRLDRIIYVPLPDLEARLEILKQCA 615 (693)
T ss_pred CcccceeEeecCccHHHHHHHHHHHH
Confidence 25666777667777778888765
No 201
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0031 Score=63.99 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=83.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHH-------HHHHhcCC-CCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKA-------IIAALGCE-TSNLG 146 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~-------i~~~l~~~-~~~~~ 146 (406)
.+-+|+++-.+++++.+--..-.++-+.++++.+|++|||||++|+.+++-...+|++. ..+--+.. +.--.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 45679999999999887533222356688999999999999999988776543322110 00000000 00001
Q ss_pred CHHHHHHHHHhhccCcceeEEeeCCCCcCc----cCcchhhhccCCC-C------------CCcEEE-EecCCh--HH-H
Q 038234 147 SLQSLVRCISESIEGKKYLVVLDDVWTDDY----TKWEPFQRCSANG-Q------------CGNNIL-VTTHKK--TV-A 205 (406)
Q Consensus 147 ~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~-~------------~gs~Ii-vTtR~~--~v-~ 205 (406)
-...+++.|++. +..+-|+.||.|..-.. +--..+...|... + -=|+|+ |.|-|. .+ .
T Consensus 491 MPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 491 MPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred CChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 112333333332 34566888998843210 0111233333211 1 125665 334331 11 1
Q ss_pred HHhccCCccccCCCChHHHHHhhhhhc
Q 038234 206 RMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 206 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.......+|++.+-..+|-..+-.++.
T Consensus 570 pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 570 PLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhhhhheeeccCccHHHHHHHHHHhh
Confidence 112336788999999888776665554
No 202
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.26 E-value=0.0041 Score=54.80 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDD 170 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 170 (406)
+|.|+|+.|.||||++..+...... ++...-...+-.+.....+.....+.++..+...+=++++|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 6899999999999999876544321 100000000000000011123345566777776778999999
Q ss_pred CCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 171 VWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 171 vw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
+.+ .+....+... ...|..++.|+....+...
T Consensus 83 ird--~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 83 MRD--LETIRLALTA---AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCC--HHHHHHHHHH---HHcCCEEEEEecCCcHHHH
Confidence 943 2333332222 2235568888877665544
No 203
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.24 E-value=0.015 Score=50.17 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=55.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhc--CCCCCC--CC-----------HHHHHH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALG--CETSNL--GS-----------LQSLVR 153 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~--~~~~~~--~~-----------~~~~~~ 153 (406)
..+++|.|..|.|||||++.+...... .....+-..+. .+.+.. .. -+...-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 458999999999999999998876432 11111111111 011100 00 111112
Q ss_pred HHHhhccCcceeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCChHHHH
Q 038234 154 CISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHKKTVAR 206 (406)
Q Consensus 154 ~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 206 (406)
.+.+.+-.++-+++||+.... |....+.+...+.....+..||++|.+.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 344556677889999987432 11122223333322223567888888876654
No 204
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0063 Score=52.25 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....+|+|.|.+|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987653
No 205
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.24 E-value=0.0042 Score=57.33 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=18.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..|.|+|.||+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 368999999999999999887753
No 206
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.21 E-value=0.0085 Score=50.47 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=30.2
Q ss_pred HhhccC-cceeEEeeCCCCc---CccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 156 SESIEG-KKYLVVLDDVWTD---DYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 156 ~~~l~~-kr~LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
++.+.. +-=|||||++--. ..-..+.+...+.....+..||+|.|+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 344444 4459999988321 1223345666666666788999999984
No 207
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.21 E-value=0.006 Score=54.40 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=55.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh------H--------HHHHHHHHHhcCCCCCCCC---HHHHHHHHHhh--ccCc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD------F--------RVAKAIIAALGCETSNLGS---LQSLVRCISES--IEGK 162 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~------~--------~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~--l~~k 162 (406)
.+++.|+|+.|.|||||.+.+..... . .+...+...+......... ...-.+.+... +..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 47899999999999999888752210 0 1111222222211111111 11111222222 2367
Q ss_pred ceeEEeeCCCCcCc-cCcc----hhhhccCCC-CCCcEEEEecCChHHHHHh
Q 038234 163 KYLVVLDDVWTDDY-TKWE----PFQRCSANG-QCGNNILVTTHKKTVARMM 208 (406)
Q Consensus 163 r~LlVlDdvw~~~~-~~~~----~l~~~l~~~-~~gs~IivTtR~~~v~~~~ 208 (406)
+.|++||..-.... .+.. .+...+... ..+..+|+||.+..++...
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 89999999854321 1111 122222222 2345799999998887764
No 208
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0092 Score=55.19 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=43.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHH-------------HHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcce--eE
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRV-------------AKAIIAALGCETSNLGSLQSLVRCISESIEGKKY--LV 166 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~--Ll 166 (406)
.++|.++|++|.|||+|.+++++...++. ...++.....+ .......+-+.+++.++++.. .+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 47899999999999999999998765410 11111111111 113345566777888877664 44
Q ss_pred EeeCCC
Q 038234 167 VLDDVW 172 (406)
Q Consensus 167 VlDdvw 172 (406)
.+|.|.
T Consensus 255 LIDEVE 260 (423)
T KOG0744|consen 255 LIDEVE 260 (423)
T ss_pred EeHHHH
Confidence 578773
No 209
>PRK06762 hypothetical protein; Provisional
Probab=96.19 E-value=0.0037 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887653
No 210
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.19 E-value=0.007 Score=63.27 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
++...|+|+|..|+|||||++.+..-+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34568999999999999999998776543
No 211
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.005 Score=51.24 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=31.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH------HHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF------RVAKAIIAALGCE 141 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~------~~~~~i~~~l~~~ 141 (406)
+|.|.|++|.||||+|+.+.++..- .++++++...+-+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCC
Confidence 6899999999999999999988653 6777777776543
No 212
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.022 Score=52.05 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=60.2
Q ss_pred ceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
++=|-+..+++|.+.+.-.-.. +-.+++-|.++|.+|.|||-||++|+|+-...|++..-..+...... +-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG--dG 263 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG--DG 263 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc--cc
Confidence 4557888888888876433211 24557788999999999999999999998876666554444322211 11
Q ss_pred HHHHHHHHhhc-cCcceeEEeeCCC
Q 038234 149 QSLVRCISESI-EGKKYLVVLDDVW 172 (406)
Q Consensus 149 ~~~~~~l~~~l-~~kr~LlVlDdvw 172 (406)
-.+++.+.+.. ..-+.++++|.+.
T Consensus 264 pklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 264 PKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred hHHHHHHHHHHHhcCCceEEeehhh
Confidence 12333333332 3456778888763
No 213
>PTZ00301 uridine kinase; Provisional
Probab=96.18 E-value=0.0039 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999876543
No 214
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.16 E-value=0.0056 Score=60.53 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=36.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++||++.++.+...+.... -|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 348899999999999887643 4789999999999999988764
No 215
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.022 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
-.+-+|.|+.|.||||||..+.-++.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788999999999999999987764
No 216
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.15 E-value=0.012 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..+|-|+|.+|.||||||+++.+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 217
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.12 E-value=0.0038 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987554
No 218
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0042 Score=63.19 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=86.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHH------HhcCC--CCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIA------ALGCE--TSNLG 146 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~------~l~~~--~~~~~ 146 (406)
.+-+|.++-.+++++.|.-......-...++++||++|||||+|++.+++....+|.+--+. .+.++ +---.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccccc
Confidence 45679999999998887432211133457999999999999999988776543211110000 00000 00001
Q ss_pred CHHHHHHHHHhhccCcceeEEeeCCCCcCcc----CcchhhhccCCCCC-------------CcEE-EEecCChH---HH
Q 038234 147 SLQSLVRCISESIEGKKYLVVLDDVWTDDYT----KWEPFQRCSANGQC-------------GNNI-LVTTHKKT---VA 205 (406)
Q Consensus 147 ~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~~-------------gs~I-ivTtR~~~---v~ 205 (406)
-...+++.+++. +.++-|++||.+.....+ --..+...|....+ =|.| .|||-|.- .+
T Consensus 403 mPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~ 481 (782)
T COG0466 403 MPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA 481 (782)
T ss_pred CChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence 112333333332 456779999998654321 11234444432111 1344 45665521 12
Q ss_pred HHhccCCccccCCCChHHHHHhhhhhc
Q 038234 206 RMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 206 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+....++++.+-+++|-.++-+++.
T Consensus 482 PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 482 PLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333457899999999999887776655
No 219
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.02 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999887
No 220
>PRK03839 putative kinase; Provisional
Probab=96.05 E-value=0.0036 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=21.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
.|.|.|++|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999887543
No 221
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.022 Score=53.17 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..++++|+|++|+||||++..++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998866543
No 222
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.04 E-value=0.023 Score=49.19 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=57.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH------------------HHHH------HHHHHhcCCC------CCCCCHHHH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF------------------RVAK------AIIAALGCET------SNLGSLQSL 151 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~~~~------~i~~~l~~~~------~~~~~~~~~ 151 (406)
..+++|+|..|.|||||.+.++..... .... +++..++... .....-+.-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 558999999999999999998875321 1111 1222222211 111111222
Q ss_pred HHHHHhhccCcceeEEeeCCCCc-CccCcchhhhccCCC-CC-CcEEEEecCChHHHH
Q 038234 152 VRCISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANG-QC-GNNILVTTHKKTVAR 206 (406)
Q Consensus 152 ~~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~v~~ 206 (406)
.-.+.+.+-..+-+++||+.-.. |......+...+... .. +..||++|.+.....
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22355566678889999987321 112223333333321 12 567888888866543
No 223
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.01 E-value=0.012 Score=60.13 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 73 DESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 73 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....++|....+.++.+.+..-. .....|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34579999999999988886543 223357899999999999999998653
No 224
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.01 E-value=0.028 Score=52.41 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=84.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------HHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------RVAKAIIA 136 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------~~~~~i~~ 136 (406)
..++|-.++..++-.++....- .+...-+.|+|+.|.|||+|......+.+. -.++.|..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 3478888888888777754321 233557889999999999998766655221 12333444
Q ss_pred HhcC----CCCC----CCCHHHHHHHHHhh--ccCcceeEEeeCCCCcCccCcchhhhcc-----CCCCCCcEEEEecCC
Q 038234 137 ALGC----ETSN----LGSLQSLVRCISES--IEGKKYLVVLDDVWTDDYTKWEPFQRCS-----ANGQCGNNILVTTHK 201 (406)
Q Consensus 137 ~l~~----~~~~----~~~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l-----~~~~~gs~IivTtR~ 201 (406)
++.. .... ..+...+...++.. ..+-++.+|+|...-.-...-..+...+ ....+=+.|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 3322 1111 22333344444332 1234578888876221111111111111 123345566799997
Q ss_pred hHHH---HHh----ccCCccccCCCChHHHHHhhhhhc
Q 038234 202 KTVA---RMM----ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 202 ~~v~---~~~----~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+- +.. .-..++-++.++-++...++++..
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5322 122 123466777888888888888754
No 225
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.99 E-value=0.027 Score=57.28 Aligned_cols=154 Identities=13% Similarity=0.104 Sum_probs=87.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------------HH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------------RV 130 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~ 130 (406)
..+-+|+.+..+|.+.+...-.. ......+-|.|.+|+|||..+..|.+.... ++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 34668999999999888755432 234558899999999999999999885432 67
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcCccCcchhhhccCC-CCCCcEEEEecC-Ch-
Q 038234 131 AKAIIAALGCETSNLGSLQSLVRCISESI-----EGKKYLVVLDDVWTDDYTKWEPFQRCSAN-GQCGNNILVTTH-KK- 202 (406)
Q Consensus 131 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~IivTtR-~~- 202 (406)
+..||..+.+.... .......|..+. +.+..++++|++..--...-+.+...+.| ..++|+++|.+= +-
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 77788888665432 222223333333 24567888887722100111223334443 245666654332 21
Q ss_pred HHHH-Hhc-------cCCccccCCCChHHHHHhhhhhc
Q 038234 203 TVAR-MME-------STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 203 ~v~~-~~~-------~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
++.. .+. ...-+...|-+.++-.++...+.
T Consensus 552 dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 1111 111 02335566677777666655544
No 226
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.014 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
+.|.+.|.+|+||||+|+++.+..+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999998876554
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.98 E-value=0.046 Score=51.98 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 82 YKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 82 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.-.+.|.+.|.... .....+|+|.|.=|+|||++.+.+.+
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566777776542 36688999999999999999977754
No 228
>PRK04040 adenylate kinase; Provisional
Probab=95.94 E-value=0.0063 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+|+|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887665
No 229
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.91 E-value=0.086 Score=51.18 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=33.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHH-HHHhcCC
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLA-QMAYNDK 126 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~ 126 (406)
|.+.+++|..||... .-..|.|.|+-|.||+.|+ .++.++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r 42 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDR 42 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCC
Confidence 567789999999854 3569999999999999999 6666553
No 230
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.91 E-value=0.012 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
..|.|.|++|+||||+|+.+.+.+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34899999999999999999877543
No 231
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.055 Score=48.64 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=70.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH----------------HHHHHHHHHhcCCCCCC--CCHHHHHHHHHhhc-c
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF----------------RVAKAIIAALGCETSNL--GSLQSLVRCISESI-E 160 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~ 160 (406)
++-.++.++|.-|.|||.+.++....... .+...+...+..+.... .-...+...+.... +
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 44669999999999999999854432211 45555555555422111 11222223333332 4
Q ss_pred Ccc-eeEEeeCCCCcCccCcchhhhccC---CCCCCcEEEEecC--------ChHHHHHhccCCc-cccCCCChHHHHHh
Q 038234 161 GKK-YLVVLDDVWTDDYTKWEPFQRCSA---NGQCGNNILVTTH--------KKTVARMMESTNF-ISIKELSTQECWSL 227 (406)
Q Consensus 161 ~kr-~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~IivTtR--------~~~v~~~~~~~~~-~~l~~L~~~~a~~L 227 (406)
++| ..++.|+...-..+..+.++.... ....--+|+..-. -......-....+ |++.|++.++...+
T Consensus 129 g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~y 208 (269)
T COG3267 129 GKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLY 208 (269)
T ss_pred CCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHH
Confidence 677 899999996654444444433322 1111112333221 1112222122344 89999999977766
Q ss_pred hhhhc
Q 038234 228 FKQES 232 (406)
Q Consensus 228 f~~~~ 232 (406)
+....
T Consensus 209 l~~~L 213 (269)
T COG3267 209 LRHRL 213 (269)
T ss_pred HHHHH
Confidence 65543
No 232
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0063 Score=55.94 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHH-HHHhhccCcceeEEeeCCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVR-CISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdvw 172 (406)
..+..++|||++|.|||-+|+.|+....+.++......+.... ..+...+++ ..+..-...++.|.+||+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky--iGEsaRlIRemf~yA~~~~pciifmdeiD 235 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY--IGESARLIRDMFRYAREVIPCIIFMDEID 235 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh--cccHHHHHHHHHHHHhhhCceEEeehhhh
Confidence 4577899999999999999999999888766554444443221 122223333 2333333457999999983
No 233
>PRK10867 signal recognition particle protein; Provisional
Probab=95.88 E-value=0.029 Score=55.23 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=19.4
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.++.+|.++|.+|+||||++..++
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 447899999999999999665444
No 234
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.87 E-value=0.012 Score=48.06 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 82 YKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 82 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++..++-+.|...- .+..+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34555555554321 235589999999999999999988764
No 235
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.86 E-value=0.019 Score=50.82 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=55.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh--------------HHHHHHHHHHhcCCCCCCCCHHHHHH---HHHhh--ccCc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD--------------FRVAKAIIAALGCETSNLGSLQSLVR---CISES--IEGK 162 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~--------------~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~~~--l~~k 162 (406)
.+++.|.|+.|.||||+.+.+..-.- ..+...+...++.............. .+... +..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999887743210 01222222222221111111111111 12222 2356
Q ss_pred ceeEEeeCCCCcC-ccC----cchhhhccCCCCCCcEEEEecCChHHHHHhc
Q 038234 163 KYLVVLDDVWTDD-YTK----WEPFQRCSANGQCGNNILVTTHKKTVARMME 209 (406)
Q Consensus 163 r~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 209 (406)
+-|++||..-... ..+ ...+...+.. .|+.+|++|.+..++....
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 7899999974321 111 1112222222 2779999999998887654
No 236
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.85 E-value=0.0059 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999988754
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.85 E-value=0.01 Score=62.55 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=37.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 358999998888877776432 223468899999999999999998743
No 238
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.84 E-value=0.017 Score=56.72 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=35.3
Q ss_pred CceecchhhHHHHHHHHh-------cCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 75 SEICGRDYKKNELLSKLL-------SDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~-------~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..++|.+..++.+...+. .... +-.-....+.++|++|+|||+||+.+++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 358999988887754442 1100 0011235689999999999999999986543
No 239
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.83 E-value=0.019 Score=52.73 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=65.9
Q ss_pred ceecchhhHHHHHHHHhcCC-CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----HHHHHHHHHhcCCCCCCCCHH
Q 038234 76 EICGRDYKKNELLSKLLSDS-SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----RVAKAIIAALGCETSNLGSLQ 149 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~~~~~i~~~l~~~~~~~~~~~ 149 (406)
.++|..-..+.++..+...- .+....+-+++.+|.+|+||.-.++.+++.... .+...+.... ..+.....+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~--hFP~~~~ie 160 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATL--HFPHASKIE 160 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhc--cCCChHHHH
Confidence 45665555555555554321 112456779999999999999998888776443 2222222211 233344444
Q ss_pred HHHHHHHhhcc-----CcceeEEeeCCCCcCccCcchhhhccC
Q 038234 150 SLVRCISESIE-----GKKYLVVLDDVWTDDYTKWEPFQRCSA 187 (406)
Q Consensus 150 ~~~~~l~~~l~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~ 187 (406)
.-..+|++++. -+|.|+|+|++......-.+.+...+.
T Consensus 161 ~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 44455555543 378999999997666555566666554
No 240
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.81 E-value=0.027 Score=47.98 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=54.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH--------------------HH-HHHHHHHhcC-CCCCCCCHHHHHHHHHhhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF--------------------RV-AKAIIAALGC-ETSNLGSLQSLVRCISESI 159 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~-~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l 159 (406)
-.+++|+|..|.|||||++.+...... .+ ...+.+.+.. .......-+...-.+.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 558999999999999999998876432 00 0011111110 0111111122222345556
Q ss_pred cCcceeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCChHHHH
Q 038234 160 EGKKYLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHKKTVAR 206 (406)
Q Consensus 160 ~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 206 (406)
-.++-+++||+.-.. |......+...+... +..||++|.+.....
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 667889999976321 111222233333322 356888888766543
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.029 Score=54.52 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=42.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh---------H-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD---------F-------------RVAKAIIAALGCETSNLGSLQSLVRCISES 158 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~---------~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 158 (406)
...+|.++|..|+||||.+..++.... + ..++.....++.......+.+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 467999999999999998876654321 1 223333333433322334445555555543
Q ss_pred ccCcceeEEeeCCCC
Q 038234 159 IEGKKYLVVLDDVWT 173 (406)
Q Consensus 159 l~~kr~LlVlDdvw~ 173 (406)
.+.-++++|..-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888898744
No 242
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.80 E-value=0.0068 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988654
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.79 E-value=0.026 Score=51.23 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=64.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH---------------------HHHHHHHHHhcCCCC------CCCCHHHH-HH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF---------------------RVAKAIIAALGCETS------NLGSLQSL-VR 153 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~~~i~~~l~~~~~------~~~~~~~~-~~ 153 (406)
..+++|+|.+|.|||||++.+..-... +...+++..++.... ..-+-.+. .-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhH
Confidence 558999999999999999999875442 233445555543221 11111122 22
Q ss_pred HHHhhccCcceeEEeeCCCCcCccCc-chhhhccCC--CCCCcEEEEecCChHHHHHhcc
Q 038234 154 CISESIEGKKYLVVLDDVWTDDYTKW-EPFQRCSAN--GQCGNNILVTTHKKTVARMMES 210 (406)
Q Consensus 154 ~l~~~l~~kr~LlVlDdvw~~~~~~~-~~l~~~l~~--~~~gs~IivTtR~~~v~~~~~~ 210 (406)
.+.+.|.-++-|+|.|..-+.-.... .++...+.+ ...|-..+..|.+-.++..++.
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 46677888999999998744321111 223232221 2235677888888777776543
No 244
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.02 Score=56.39 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=55.7
Q ss_pred ceecchh---hHHHHHHHHhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH-------HHHHHHhcCCC
Q 038234 76 EICGRDY---KKNELLSKLLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA-------KAIIAALGCET 142 (406)
Q Consensus 76 ~~vGR~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------~~i~~~l~~~~ 142 (406)
++-|-|+ |++++++.|..+.. -+..-++-|.++|++|.|||-||++++-...+-|+ .+++...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvG--- 381 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVG--- 381 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhccc---
Confidence 4556665 67777888865421 12344677899999999999999999988766332 11111111
Q ss_pred CCCCCHHHHHHHHHhhccCcceeEEeeCCCC
Q 038234 143 SNLGSLQSLVRCISESIEGKKYLVVLDDVWT 173 (406)
Q Consensus 143 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 173 (406)
...+.+.....-..-+++|++|.+..
T Consensus 382 -----ArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 382 -----ARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred -----HHHHHHHHHHHHhcCCeEEEEechhh
Confidence 12222233333345689999998853
No 245
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.012 Score=60.24 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=22.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++..++++||++|.||||+|..+-+-+.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4466999999999999999977766543
No 246
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.76 E-value=0.015 Score=49.49 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH----------HHH----HHHHH-HhcCCCCCCCCHHHHHHHHHhhccCcceeE
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF----------RVA----KAIIA-ALGCETSNLGSLQSLVRCISESIEGKKYLV 166 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~----~~i~~-~l~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 166 (406)
..+++|.|..|.|||||.+.++..... .+. ..... .++ -..+...-+...-.+.+.+-.++-++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~-~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA-MVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE-EEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 458999999999999999999865432 000 00000 000 00001111222223555666788899
Q ss_pred EeeCCCCc-CccCcchhhhccCCC-CCCcEEEEecCChHHHH
Q 038234 167 VLDDVWTD-DYTKWEPFQRCSANG-QCGNNILVTTHKKTVAR 206 (406)
Q Consensus 167 VlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~v~~ 206 (406)
++|+.-.. |......+...+... ..|..||++|.+.....
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 99987321 112222333333221 23667888888866443
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.76 E-value=0.022 Score=53.85 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=44.7
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC-----CCCCCHHHHHHHHHhhcc-
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET-----SNLGSLQSLVRCISESIE- 160 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~- 160 (406)
=+.-+++-|+|++|+||||||.+++..... .+....+..++... ..+.+.++....+...++
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 355789999999999999999876643211 22233444443321 123344555555555443
Q ss_pred CcceeEEeeCCC
Q 038234 161 GKKYLVVLDDVW 172 (406)
Q Consensus 161 ~kr~LlVlDdvw 172 (406)
+..-|+|+|-+-
T Consensus 132 ~~~~lIVIDSva 143 (325)
T cd00983 132 GAVDLIVVDSVA 143 (325)
T ss_pred cCCCEEEEcchH
Confidence 456699999873
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.75 E-value=0.0076 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.6
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
|.++|.+|+|||+||+.+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999988754
No 249
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.73 E-value=0.044 Score=48.50 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+++|.|..|.|||||.+.+...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3558999999999999999988754
No 250
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.0092 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999987764
No 251
>PRK00625 shikimate kinase; Provisional
Probab=95.72 E-value=0.0062 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999977643
No 252
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.71 E-value=0.014 Score=52.56 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++..+++|.|..|.|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999887644
No 253
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.71 E-value=0.023 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|.|||||.+.+....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4589999999999999999988653
No 254
>PRK14974 cell division protein FtsY; Provisional
Probab=95.71 E-value=0.036 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=19.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999996655554
No 255
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.71 E-value=0.014 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999998876654
No 256
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.70 E-value=0.025 Score=53.42 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=44.6
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC-----CCCCCHHHHHHHHHhhcc-
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET-----SNLGSLQSLVRCISESIE- 160 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~- 160 (406)
=+.-+++-|+|++|+||||||.++...... .+....+..++... ..+...++....+...++
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 355789999999999999998776543211 22223344443321 122344555555544443
Q ss_pred CcceeEEeeCCC
Q 038234 161 GKKYLVVLDDVW 172 (406)
Q Consensus 161 ~kr~LlVlDdvw 172 (406)
+..-++|+|.+-
T Consensus 132 ~~~~lIVIDSv~ 143 (321)
T TIGR02012 132 GAVDIIVVDSVA 143 (321)
T ss_pred cCCcEEEEcchh
Confidence 456799999873
No 257
>PRK05439 pantothenate kinase; Provisional
Probab=95.70 E-value=0.014 Score=54.84 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999987654
No 258
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.70 E-value=0.012 Score=55.61 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=43.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..|+|.++.++++++.+...+......-+++-++|+.|.||||||..+-+-
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999998765544677889999999999999999877554
No 259
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.69 E-value=0.016 Score=53.92 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=20.6
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHH
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v 122 (406)
.....+|+|.|..|+||||+|+.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L 82 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARIL 82 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999999765
No 260
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.68 E-value=0.016 Score=60.13 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+...++|+|..|.|||||++.+....
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45689999999999999999887654
No 261
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.67 E-value=0.019 Score=51.93 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..++++.+... ..+..+|+|.|.||+||+||...+...
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 456677777654 356789999999999999998765443
No 262
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.67 E-value=0.033 Score=54.45 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=36.0
Q ss_pred CceecchhhHHHHHHHHh-------cC-CCCCCC----CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 75 SEICGRDYKKNELLSKLL-------SD-SSDQQK----PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~-------~~-~~~~~~----~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..++|.++.++.+...+. .. ....++ ....+.++|++|+|||+||+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 467899988888765541 10 000001 135789999999999999999986543
No 263
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.66 E-value=0.034 Score=46.23 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=54.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCc-Ccc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFR---VAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTD-DYT 177 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-~~~ 177 (406)
..+++|+|..|.|||||++.+....... +.-.--..+. -.+....-+...-.+.+.+-.++-++++|+.-.. |..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~ 104 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 4589999999999999999988764320 0000000000 0001111122223355666678889999987321 112
Q ss_pred CcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 178 KWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 178 ~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
....+...+... +..||++|.+...+..
T Consensus 105 ~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 105 SIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 223333333322 2467888877655543
No 264
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.66 E-value=0.0061 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+|.|+|++|+||||+|+.+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987654
No 265
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.65 E-value=0.043 Score=50.68 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=63.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH---------------HHHHHHHHHhcCCC-CC--
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF---------------RVAKAIIAALGCET-SN-- 144 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------~~~~~i~~~l~~~~-~~-- 144 (406)
..+.++..|.. +....-++|+|..|.|||||.+.+...... +-..++......-. ..
T Consensus 97 ~~~~~l~~l~~-----~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVR-----NNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHh-----CCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence 34555555553 233578999999999999999999876432 11233332221111 00
Q ss_pred -----CCCHHHHHHHHHhhc-cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 145 -----LGSLQSLVRCISESI-EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 145 -----~~~~~~~~~~l~~~l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
.++..... .+...+ ...+=++++|.+-. ...+..+...+. .|..||+||.+..+...
T Consensus 172 ~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHH-HHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 01111111 122222 25788999999843 233444444442 47789999998666443
No 266
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.045 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 558999999999999999988754
No 267
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0078 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.688 Sum_probs=18.5
Q ss_pred EEEEeeeCCCcHHHHHHHHh
Q 038234 104 MISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~ 123 (406)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 268
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.63 E-value=0.0086 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+++|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999876643
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.61 E-value=0.048 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.+++.++|++|+||||++..++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999775543
No 270
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.61 E-value=0.0084 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|.+.|++|+||||+|+.+.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999887653
No 271
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.60 E-value=0.0072 Score=53.17 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.5
Q ss_pred EEEEeeeCCCcHHHHHHHHhc
Q 038234 104 MISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988644
No 272
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.59 E-value=0.018 Score=58.86 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|+.|.|||||++.+....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 446689999999999999999887654
No 273
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.041 Score=47.19 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=56.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH----------HH---HHHHHHHhc--CCCCC---CCCHH--------H-HHHH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF----------RV---AKAIIAALG--CETSN---LGSLQ--------S-LVRC 154 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~---~~~i~~~l~--~~~~~---~~~~~--------~-~~~~ 154 (406)
..+++|+|..|.|||||.+.++..... .+ ...+...+. .+... ..... + ..-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 558999999999999999999875421 11 011111111 01110 00111 1 1123
Q ss_pred HHhhccCcceeEEeeCCCCc-CccCcchhhhccCCC-CCCcEEEEecCChHHHHH
Q 038234 155 ISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANG-QCGNNILVTTHKKTVARM 207 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~v~~~ 207 (406)
+...+-.++-++++|+.-.. |......+...+... ..|..||++|.+......
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 55566678889999987332 111122233333221 225678888888765553
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.54 E-value=0.024 Score=48.66 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999998776654
No 275
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.54 E-value=0.027 Score=57.58 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++...++|+|..|.|||||++.+.....
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3466899999999999999998877543
No 276
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.062 Score=48.35 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=57.4
Q ss_pred ceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
++=|-++.+++|++.+.-.... +-.+++-+..+|++|.|||-+|++.+.+....|++-..-++-.... .+-
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI--GdG 249 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI--GDG 249 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh--cch
Confidence 4557888889988876543221 2355677899999999999999998887766555432222211111 111
Q ss_pred HHHHH-HHHhhccCcceeEEeeCCC
Q 038234 149 QSLVR-CISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 149 ~~~~~-~l~~~l~~kr~LlVlDdvw 172 (406)
..+++ .+.-.-...+.+|++|.+.
T Consensus 250 AkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 250 AKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred HHHHHHHHHHhhccCCeEEEEechh
Confidence 22222 2222224567889999773
No 277
>PRK06217 hypothetical protein; Validated
Probab=95.50 E-value=0.01 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|.|.+|+||||||+++.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999887653
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.50 E-value=0.037 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++.+|.++|.+|+||||+|..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999777654
No 279
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.49 E-value=0.011 Score=56.48 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=34.0
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 77 ICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777776543 223457899999999999999987643
No 280
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.49 E-value=0.0083 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999887653
No 281
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.039 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+++|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999876653
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.028 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...++.++|+.|+||||++.++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877654
No 283
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.45 E-value=0.02 Score=60.75 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++...++|+|..|.|||||++.+..-..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3466899999999999999998876543
No 284
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.45 E-value=0.059 Score=54.59 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=60.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHH-HHHHHhcCChH----------------HHHHHHHHHhcCCCC--
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKIT-LAQMAYNDKDF----------------RVAKAIIAALGCETS-- 143 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~----------------~~~~~i~~~l~~~~~-- 143 (406)
..++|++.+.. ..||.|+|..|.|||| |++.+|.+-.. .+.+.+...++..-.
T Consensus 360 ~R~~ll~~ir~--------n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 360 CRDQLLSVIRE--------NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHHhh--------CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 34556666643 4599999999999996 77888776432 344444444432211
Q ss_pred --------CCCC----------HHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccC---CCCCCcEEEEecCCh
Q 038234 144 --------NLGS----------LQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSA---NGQCGNNILVTTHKK 202 (406)
Q Consensus 144 --------~~~~----------~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~---~~~~gs~IivTtR~~ 202 (406)
+..+ ---+...|....-.|=..||+|.+++... .-+.+...+. .....-++||||-.-
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlKliVtSATm 510 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLKLIVTSATM 510 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccceEEEeeccc
Confidence 1111 11222233333334556899999865432 2222222221 223366899988763
No 285
>PRK09354 recA recombinase A; Provisional
Probab=95.44 E-value=0.034 Score=52.96 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=45.4
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC-----CCCCCHHHHHHHHHhhcc-
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET-----SNLGSLQSLVRCISESIE- 160 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~- 160 (406)
=+.-+++-|+|++|+||||||.+++..... .+....+..++.+. ..+.+.++....+...++
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 456789999999999999999876543211 23334444444321 122344555555555443
Q ss_pred CcceeEEeeCCC
Q 038234 161 GKKYLVVLDDVW 172 (406)
Q Consensus 161 ~kr~LlVlDdvw 172 (406)
++.-|||+|-+-
T Consensus 137 ~~~~lIVIDSva 148 (349)
T PRK09354 137 GAVDLIVVDSVA 148 (349)
T ss_pred CCCCEEEEeChh
Confidence 456699999873
No 286
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.022 Score=51.25 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=53.9
Q ss_pred eecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHH
Q 038234 77 ICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQ 149 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~ 149 (406)
+=|=.+.++++.+......- -+-++++-|.++|++|.|||-+|++|+|+....|.+.|-..+-...- .+-.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyv--gega 256 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV--GEGA 256 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHh--hhhH
Confidence 33555666666655432210 12456778899999999999999999998765332222222211100 1112
Q ss_pred HHHHHHHhhcc-CcceeEEeeCCC
Q 038234 150 SLVRCISESIE-GKKYLVVLDDVW 172 (406)
Q Consensus 150 ~~~~~l~~~l~-~kr~LlVlDdvw 172 (406)
..+.+|.+..+ .|-++|++|.+.
T Consensus 257 rmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccc
Confidence 33444444444 456889999873
No 287
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.44 E-value=0.029 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
-..++|.|.+|+|||+|+..+++...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~ 94 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIA 94 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHH
Confidence 55789999999999999999887654
No 288
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.43 E-value=0.0085 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|+|.|.+|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999877643
No 289
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.43 E-value=0.0095 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++.|+|++|+||||+|+.+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 367999999999999999877643
No 290
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.011 Score=51.64 Aligned_cols=27 Identities=44% Similarity=0.476 Sum_probs=24.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
..+|+|-||=|+||||||+.+.++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 568999999999999999999887654
No 291
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.42 E-value=0.088 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999988754
No 292
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.42 E-value=0.04 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...++.|+|.+|+|||++|.+++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5577999999999999999987764
No 293
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.42 E-value=0.014 Score=60.79 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=66.9
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChHHHH----HHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc--
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDFRVA----KAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY-- 176 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-- 176 (406)
+-|.|+|++|+|||++|+.+.+.....+. .++..... ......+...+.......+++|++|+++.-..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r 260 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 260 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhcc
Confidence 44899999999999999999876543110 01111110 01122333344444456789999999843210
Q ss_pred --------cCc----chhhhccCCC--CCCcEEEEecCChHHHHH--hc---cCCccccCCCChHHHHHhhhhhc
Q 038234 177 --------TKW----EPFQRCSANG--QCGNNILVTTHKKTVARM--ME---STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 177 --------~~~----~~l~~~l~~~--~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+ ..+...+... ..+.-+|.||...+.... .. -...+.+...+.++-.++++...
T Consensus 261 ~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 261 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 011 1111112211 234455557766543221 11 15667788888777777776544
No 294
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.029 Score=50.19 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=37.8
Q ss_pred ceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
++=|.+-..+++.+...-.-.+ +-++++-|.++|++|.|||-||++|+++...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 4446776677766654322111 2456788899999999999999999998765
No 295
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.012 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998765
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.41 E-value=0.0091 Score=46.89 Aligned_cols=21 Identities=52% Similarity=0.561 Sum_probs=17.9
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
|-|+|.+|+|||+||..++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987654
No 297
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+.+.|+|++|+|||||+..+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345788999999999999999988754
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.40 E-value=0.018 Score=60.85 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+...++|+|..|.|||||++.+..-+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999887654
No 299
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.40 E-value=0.013 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++++|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998864
No 300
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.38 E-value=0.07 Score=52.59 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=20.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++.++.++|.+|+||||+|..++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998755443
No 301
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.36 E-value=0.043 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
.|.|.|++|+||||+|+.+......
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999988876543
No 302
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.34 E-value=0.01 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999888654
No 303
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.32 E-value=0.057 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988765
No 304
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.31 E-value=0.011 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|+|.|.+|+||||||..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887654
No 305
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.28 E-value=0.018 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|.|+|++|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 306
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.016 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999887654
No 307
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.25 E-value=0.015 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999988765
No 308
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.24 E-value=0.021 Score=60.52 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+..-.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999887654
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.23 E-value=0.0096 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=17.0
Q ss_pred EEEeeeCCCcHHHHHHHHhcCCh
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
|.|+|.+|+|||++|+.+++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67999999999999999877654
No 310
>PRK04132 replication factor C small subunit; Provisional
Probab=95.23 E-value=0.016 Score=61.51 Aligned_cols=121 Identities=8% Similarity=0.023 Sum_probs=71.7
Q ss_pred eCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhc-----cC-cceeEEeeCCCCcCccCcchhh
Q 038234 110 MGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESI-----EG-KKYLVVLDDVWTDDYTKWEPFQ 183 (406)
Q Consensus 110 ~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~-kr~LlVlDdvw~~~~~~~~~l~ 183 (406)
+.++||||+|.+++++.-.+-...-...+. ..+....+.+...+++.. .+ +.-++|||+++..+....+.|.
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN--ASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALL 651 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN--ASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALR 651 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe--CCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHH
Confidence 678999999999987741100000000111 111123344444443322 22 4469999999877766777777
Q ss_pred hccCCCCCCcEEEEecCC-hHHHHHh-ccCCccccCCCChHHHHHhhhhhc
Q 038234 184 RCSANGQCGNNILVTTHK-KTVARMM-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 184 ~~l~~~~~gs~IivTtR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+-.....+++|++|.+ ..+...+ +....+.+.+++.++....+...+
T Consensus 652 k~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 652 RTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred HHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHH
Confidence 777654556667666555 3333332 336789999999998887776543
No 311
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.23 E-value=0.022 Score=60.39 Aligned_cols=28 Identities=39% Similarity=0.400 Sum_probs=23.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++...++|+|..|.|||||++.+..-..
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456899999999999999998876543
No 312
>PRK13947 shikimate kinase; Provisional
Probab=95.23 E-value=0.013 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999887643
No 313
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.22 E-value=0.038 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.1
Q ss_pred EeeeCCCcHHHHHHHHhcCChH
Q 038234 107 IVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 107 I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
|.|++|+||||+|+.++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~ 22 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL 22 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS
T ss_pred CcCCCCCChHHHHHHHHHhcCc
Confidence 6899999999999999887543
No 314
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.011 Score=59.74 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=69.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCc-----
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTD----- 174 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~----- 174 (406)
...+.+.++|++|.|||.||+++++.....+..-....+.... -......+...+....+..++.|++|.+..-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~-vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW-VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc-cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 4566899999999999999999999554322211111111111 1122334445555555688999999998421
Q ss_pred Cc------cCcchhhhccCCC--CCCcEEEEecCChHHHHHh-----ccCCccccCCCChHHHHHhhhhhc
Q 038234 175 DY------TKWEPFQRCSANG--QCGNNILVTTHKKTVARMM-----ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 175 ~~------~~~~~l~~~l~~~--~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+. ....++...+... ..+..||-||-........ .-...+.+.+-+.++..++|+...
T Consensus 353 ~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~ 423 (494)
T COG0464 353 PSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHL 423 (494)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHh
Confidence 00 0111222222211 2232344444433322211 114566677777777777776543
No 315
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.21 E-value=0.027 Score=58.40 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999887654
No 316
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0069 Score=61.49 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=42.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHH----hhccCcceeEEeeCCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCIS----ESIEGKKYLVVLDDVW 172 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~~l~~kr~LlVlDdvw 172 (406)
..-|.|.|..|+|||+||+++++....... ................+.+++.+. +.+...+-+|||||+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~-~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLI-AHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccc-eEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchh
Confidence 456889999999999999999887642100 000001111112233455555444 3456789999999984
No 317
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.19 E-value=0.02 Score=59.32 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=22.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+...++|+|..|.|||||++.+.....
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 356799999999999999998877543
No 318
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.045 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+.+++.++|+.|+||||++..++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999877654
No 319
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.16 E-value=0.017 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEeeeCCCcHHHHHHHHhcCCh
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999887754
No 320
>PRK13949 shikimate kinase; Provisional
Probab=95.15 E-value=0.014 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999887644
No 321
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.14 E-value=0.021 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4669999999999999999887644
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.14 E-value=0.024 Score=52.11 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-.+++..+... .++..+|+|.|.||+||+||...+-..
T Consensus 37 a~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 37 ARELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 35666666654 567889999999999999998766443
No 323
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.047 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..++.++|++|+||||++.+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999977764
No 324
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.13 E-value=0.019 Score=49.05 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=33.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 77 ICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 77 ~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++|....+.++++.+..-.. . ..-|.|+|..|+||+.+|+.+++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~-~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---S-DLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---S-TS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhC---C-CCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 46778888888887765432 2 24567999999999999999998643
No 325
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.10 E-value=0.03 Score=57.94 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 345689999999999999999886543
No 326
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.07 E-value=0.019 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|.|+|..|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987654
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.05 E-value=0.11 Score=48.28 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.4
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+..++.|+|.+|+|||||...+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999877765
No 328
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.03 E-value=0.028 Score=58.03 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++...++|+|..|.|||||++.+.....
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999887543
No 329
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.03 E-value=0.022 Score=57.80 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=39.7
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999999988887653 234468899999999999999998753
No 330
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.02 E-value=0.016 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++|+|+.|+|||||++.+.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998764
No 331
>PRK14530 adenylate kinase; Provisional
Probab=95.01 E-value=0.014 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|+|++|+||||+|+.+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999998876554
No 332
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.00 E-value=0.035 Score=46.80 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 82 YKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 82 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.+++|.+.|.. ++++++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 467888888852 589999999999999999988775
No 333
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.022 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+++.|+|.+|+||||+.+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6799999999999999986665543
No 334
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.99 E-value=0.017 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987654
No 335
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.98 E-value=0.02 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997664
No 336
>PRK14527 adenylate kinase; Provisional
Probab=94.95 E-value=0.019 Score=50.20 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...+|.|+|++|+||||+|+.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999998876543
No 337
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.95 E-value=0.034 Score=58.77 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++...++|+|..|.|||||++.+..-..
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456899999999999999998877543
No 338
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.95 E-value=0.018 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=18.3
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.|+|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999887654
No 339
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.041 Score=55.22 Aligned_cols=125 Identities=12% Similarity=0.159 Sum_probs=71.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHH-----HHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCc--
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAK-----AIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTD-- 174 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-----~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~-- 174 (406)
+.-|.+||++|.|||-||++|+|.....|.. -+-..++ .+...+....++.-..-++.|+||.+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG------ESERAVRQVFQRARASAPCVIFFDEIDALVP 618 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh------hHHHHHHHHHHHhhcCCCeEEEecchhhcCc
Confidence 5568899999999999999999987652210 0111111 22334444555555678999999988431
Q ss_pred ---CccCc------chhhhccCC--CCCCcEEEEecCChHHHHH--hcc---CCccccCCCChHHHHHhhhhhc
Q 038234 175 ---DYTKW------EPFQRCSAN--GQCGNNILVTTHKKTVARM--MES---TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 175 ---~~~~~------~~l~~~l~~--~~~gs~IivTtR~~~v~~~--~~~---~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+...| +++..-+.. ...|--||-.|-.+++..- +.+ .+.+-++.-+.+|-..+++...
T Consensus 619 ~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 619 RRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred ccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 11122 233333332 2335556655554444321 122 5566677777777777777643
No 340
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.089 Score=50.54 Aligned_cols=70 Identities=30% Similarity=0.297 Sum_probs=46.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhccCc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESIEGK 162 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~k 162 (406)
+-.+|.|-|-+|||||||..++..+... .-.+--+..++.... ...+.+.+.+.+.+ .+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~ 168 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ---EK 168 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh---cC
Confidence 3568999999999999998777665432 223333445543322 23566666666665 68
Q ss_pred ceeEEeeCCCC
Q 038234 163 KYLVVLDDVWT 173 (406)
Q Consensus 163 r~LlVlDdvw~ 173 (406)
+-|+|+|-++.
T Consensus 169 p~lvVIDSIQT 179 (456)
T COG1066 169 PDLVVIDSIQT 179 (456)
T ss_pred CCEEEEeccce
Confidence 89999998854
No 341
>PRK13975 thymidylate kinase; Provisional
Probab=94.90 E-value=0.018 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999887654
No 342
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.90 E-value=0.015 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999887654
No 343
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.021 Score=50.93 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|.+|.|||||++.+.--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3558999999999999999988654
No 344
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.87 E-value=0.15 Score=46.50 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=23.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...+++|.|+.|+|||||.+.++.-..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999988543
No 345
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.86 E-value=0.097 Score=49.49 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.2
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
=+...++-|+|.+|+|||+|+.+++
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla 117 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLC 117 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHH
Confidence 3557899999999999999997655
No 346
>PLN02200 adenylate kinase family protein
Probab=94.83 E-value=0.022 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=23.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...+|.|.|++|+||||+|+.+.+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999998876544
No 347
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.82 E-value=0.096 Score=46.44 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.-.++++.|..|+|||||.+.++....
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999987654
No 348
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.82 E-value=0.049 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...++|+|..|+|||||++.+.+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC
Confidence 4578999999999999999998754
No 349
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.1 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++++|+.|+||||++.+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 57999999999999998766653
No 350
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.80 E-value=0.089 Score=59.74 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
...+-|.++|++|.|||.||++++....+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 44678899999999999999999998776
No 351
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.80 E-value=0.034 Score=56.62 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=35.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998877532 234568999999999999999875
No 352
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.79 E-value=0.029 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.339 Sum_probs=19.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
-..++|+|++|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999998864
No 353
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.79 E-value=0.026 Score=48.31 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 5688999999999999999998876
No 354
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.77 E-value=0.077 Score=48.11 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
......|.++||+|.||||..+.++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3456688999999999999998877654
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.75 E-value=0.028 Score=52.06 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+++.+... .+-+.++|+.|+|||++++...+..
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccC
Confidence 35566666643 4467899999999999998877543
No 356
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.74 E-value=0.046 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+-|.++||.|+||||+.+.+++...
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN 27 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC
Confidence 3578999999999999999987544
No 357
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.021 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..-|.|.|.+|+|||||+..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3458899999999999999998654
No 358
>PRK13948 shikimate kinase; Provisional
Probab=94.73 E-value=0.023 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+...|.++|+.|+||||+++.+.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999988754
No 359
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.73 E-value=0.035 Score=53.98 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=36.7
Q ss_pred CceecchhhHHHHHHHHhcC--------CCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 75 SEICGRDYKKNELLSKLLSD--------SSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.+++|.++.++.+.-.+... ...+.-..+.|.++|++|+|||+||+.+.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788888888776555431 000112346789999999999999998877543
No 360
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.73 E-value=0.021 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=17.2
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999988765
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.71 E-value=0.06 Score=48.65 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
=+...++.|+|.+|+|||+||.++.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHH
Confidence 3557799999999999999998874
No 362
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.69 E-value=0.028 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 363
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.69 E-value=0.03 Score=57.74 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+...++|+|..|.|||||++.+....
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999886553
No 364
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.68 E-value=0.022 Score=48.90 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+.|.|+|+.|+|||||++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3468999999999999999998654
No 365
>PRK04182 cytidylate kinase; Provisional
Probab=94.67 E-value=0.023 Score=48.82 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
+|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999876543
No 366
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.66 E-value=0.028 Score=52.78 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=20.3
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHH
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v 122 (406)
++..+++++.|-|||||||+|..+
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NL 26 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNT 26 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHH
Confidence 456799999999999999987554
No 367
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.66 E-value=0.022 Score=52.95 Aligned_cols=21 Identities=48% Similarity=0.626 Sum_probs=17.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+.|+|+|-||+||||++..++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIA 21 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHH
Confidence 368999999999999886654
No 368
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.63 E-value=0.072 Score=46.89 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|+|+|.+|+|||||...+.+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 5688999999999999998887753
No 369
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.62 E-value=0.051 Score=51.62 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+.+.+... ..+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34566665432 34578999999999999999977544
No 370
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.62 E-value=0.2 Score=42.50 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHhhccCcceeEEeeCCCCc-CccCcchhhhcc--CCCCCCcEEEEecCChHHHHHhcc
Q 038234 153 RCISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCS--ANGQCGNNILVTTHKKTVARMMES 210 (406)
Q Consensus 153 ~~l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l--~~~~~gs~IivTtR~~~v~~~~~~ 210 (406)
-.|.+.+...+-+|+-|.---+ |...-+.+...+ .+...|+-.++-|.++.+|..|..
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhh
Confidence 3567777888889998854110 111112222222 134568889999999999998754
No 371
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.60 E-value=0.068 Score=47.72 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.+|+|.|+.|.||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999986544
No 372
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.60 E-value=0.058 Score=52.50 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=38.1
Q ss_pred CceecchhhHHHHHHHHhcC--------CCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 75 SEICGRDYKKNELLSKLLSD--------SSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
..++|.+..++.+..++... .....-..+.|.++|++|+|||+||+.+......
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889988888887777431 0000112467899999999999999988776543
No 373
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.11 Score=55.07 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=61.4
Q ss_pred ceecchhhHHHHHHHHhcCCCC-CC-CCcEEEEEeeeCCCcHHHHHHHHhcCC----hH-------HHHHHHHHHhcCCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSD-QQ-KPIKMISIVGMGGIGKITLAQMAYNDK----DF-------RVAKAIIAALGCET 142 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~-~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~-------~~~~~i~~~l~~~~ 142 (406)
.++|-++.+..+-+.+.....+ .+ .+.-.+.+.|+.|+|||-||++++... .. .+.. ...+....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e--vskligsp 640 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE--VSKLIGSP 640 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh--hhhccCCC
Confidence 3556666677776666543221 12 246677899999999999987765533 21 2222 22222222
Q ss_pred CCCCCHHHHHHHHHhhccCcce-eEEeeCCCCcCccCcchhhhccC
Q 038234 143 SNLGSLQSLVRCISESIEGKKY-LVVLDDVWTDDYTKWEPFQRCSA 187 (406)
Q Consensus 143 ~~~~~~~~~~~~l~~~l~~kr~-LlVlDdvw~~~~~~~~~l~~~l~ 187 (406)
+..-. .+....|.+.++.++| +|.||||...+......+...+.
T Consensus 641 ~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 641 PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 21111 1223356666677776 77799997666555554555554
No 374
>PRK15453 phosphoribulokinase; Provisional
Probab=94.59 E-value=0.029 Score=51.60 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999987764
No 375
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.57 E-value=0.06 Score=50.48 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=78.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH--------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhh----cc-CcceeE
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF--------RVAKAIIAALGCETSNLGSLQSLVRCISES----IE-GKKYLV 166 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~-~kr~Ll 166 (406)
.-.++..++|..|.||+++|..+.+..-. .....-...+.. .......+++...+... .. +++-++
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kvv 94 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-FDKDLSKSEFLSAINKLYFSSFVQSQKKIL 94 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-CCCcCCHHHHHHHHHHhccCCcccCCceEE
Confidence 34667889999999999999876544200 000000000000 01112344544433333 12 577889
Q ss_pred EeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC-hHHHHH-hccCCccccCCCChHHHHHhhhhh
Q 038234 167 VLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK-KTVARM-MESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 167 VlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
|+|++...+....+.+...+..-+.++.+|++|.+ ..+... .....++++.+++.++....+...
T Consensus 95 II~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 95 IIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 99999666655666777777766667777765544 444443 344788999999999988776653
No 376
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.56 E-value=0.037 Score=58.60 Aligned_cols=27 Identities=37% Similarity=0.468 Sum_probs=22.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+...++|+|..|.|||||++.+.....
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999877543
No 377
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.55 E-value=0.044 Score=52.26 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=34.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+||.+..+..++-.+.. +...-+.|.|.+|+|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~------~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID------PKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcC------CCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 3478988888887666653 23445779999999999999988643
No 378
>PRK13946 shikimate kinase; Provisional
Probab=94.55 E-value=0.023 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.+.|.++|++|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999987643
No 379
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.54 E-value=0.16 Score=49.29 Aligned_cols=26 Identities=38% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..++.|.|.+|+|||||+.+++..
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~ 105 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR 105 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34679999999999999999877643
No 380
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.54 E-value=0.14 Score=51.96 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHhhccCcceeEEeeCCCCc-CccCcchhhhccCCCCCCcEEEEecCChHHHHHhccCCccccC
Q 038234 155 ISESIEGKKYLVVLDDVWTD-DYTKWEPFQRCSANGQCGNNILVTTHKKTVARMMESTNFISIK 217 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~ 217 (406)
+...+-.++-+||||.--+. |.+..+.+...+.... | .||+.|.++.....+. ..++.+.
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-G-tvl~VSHDr~Fl~~va-~~i~~~~ 510 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-G-TVLLVSHDRYFLDRVA-TRIWLVE 510 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhc-ceEEEEc
Confidence 44445567889999976321 2234445555665443 4 5888999988877755 3444443
No 381
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.52 E-value=0.052 Score=51.87 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..++|.++.+..+...+.... -+.+.|.+|+|||+||+.+.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHhC
Confidence 348898888888877776533 478999999999999999887654
No 382
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.50 E-value=0.027 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999987544
No 383
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.50 E-value=0.052 Score=55.65 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=33.9
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|..+.|.+-.+.|.+..... .....+|.|+|++|+||||+|+.++...
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r----~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPR----HKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccc----cCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 345556666566555444322 3446689999999999999999987654
No 384
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.46 E-value=0.05 Score=51.22 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+++.+... .....+|+|+|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~----~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPY----TGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcc----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34445544332 45688999999999999999987654
No 385
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.46 E-value=0.093 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|.|+.|.|||||.+.+..-.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999887753
No 386
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.46 E-value=0.028 Score=50.06 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=17.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|.|-||+||||++..++
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA 21 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLS 21 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHH
Confidence 468999999999999887653
No 387
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.44 E-value=0.029 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|+|-||+||||+|..+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA 22 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIA 22 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 478899999999999886654
No 388
>PRK14532 adenylate kinase; Provisional
Probab=94.44 E-value=0.026 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred EEEeeeCCCcHHHHHHHHhcCChH
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
|.|.|++|+||||+|+.+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~ 26 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGM 26 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 788999999999999999876543
No 389
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.44 E-value=0.037 Score=52.91 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=35.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+||-++.+..|...+.. +...-|.|.|..|+||||+|+.+++-
T Consensus 17 ~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4588998877777776653 34556779999999999999988654
No 390
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.43 E-value=0.093 Score=53.83 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999887654
No 391
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.43 E-value=0.076 Score=42.62 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=32.9
Q ss_pred ceecchhhHHHHHHHHhcCC-CCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 76 EICGRDYKKNELLSKLLSDS-SDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++|-.-..+.+++.+...- ....+.+-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46666555555555443211 112456789999999999999988777665
No 392
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.42 E-value=0.11 Score=48.81 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+..++++.|+.|.|||||.+.+.....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356899999999999999998887543
No 393
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.42 E-value=0.033 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|+|+.|+||||+|+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 468999999999999999988883
No 394
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.41 E-value=0.037 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+.+++.++|++|+||||++..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999998876654
No 395
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.41 E-value=0.024 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=19.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.|.++|++|+||||+|+.+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999887643
No 396
>PRK08356 hypothetical protein; Provisional
Probab=94.39 E-value=0.035 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+|+|+|++|+||||+|+.+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998843
No 397
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.39 E-value=0.047 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345689999999999999999887754
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.39 E-value=0.2 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+..+|+|.+|.||||+.+.++.+.
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCC
Confidence 4578999999999999999998864
No 399
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.18 Score=52.21 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=57.6
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------HHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------RVAKAIIAALGC 140 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------~~~~~i~~~l~~ 140 (406)
.++=|-++-+.+|.+-+.-.-.. +-.+..-|.++|++|.|||-||++|+-...- +++.. .++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM---YVG- 747 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM---YVG- 747 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH---Hhc-
Confidence 34557788788887766432100 1122446889999999999999999887643 22221 111
Q ss_pred CCCCCCCHHHHHHHHHhhccCcceeEEeeCCCC
Q 038234 141 ETSNLGSLQSLVRCISESIEGKKYLVVLDDVWT 173 (406)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~ 173 (406)
.+.+.+.+...+.=..++|.|.||.+.+
T Consensus 748 -----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 748 -----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2334455555555567999999999843
No 400
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.37 E-value=0.03 Score=52.73 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+++.+.|-||+||||+|.+.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A 22 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALA 22 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHH
Confidence 578999999999999996653
No 401
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.37 E-value=0.03 Score=51.98 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=17.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|+|-|||||||+|..+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA 22 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLT 22 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 478888999999999886653
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.11 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+++++|..|+||||+...+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999875543
No 403
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.35 E-value=0.053 Score=54.95 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++..+|+|.|.+|.||||||+.+....
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3457899999999999999999987654
No 404
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.35 E-value=0.032 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.-|+|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568999999999999999888764
No 405
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.35 E-value=0.035 Score=49.70 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=54.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH--------------HHHHHHHHHhcCCCCCCCC---HHHHHHHHHhhc--cCc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF--------------RVAKAIIAALGCETSNLGS---LQSLVRCISESI--EGK 162 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~~~~i~~~l~~~~~~~~~---~~~~~~~l~~~l--~~k 162 (406)
.+++.|.|..|.||||+.+.+.-..-. .+...++..++.......+ ...-...+...+ .++
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 568899999999999998877542100 1111111112111111111 111112222222 257
Q ss_pred ceeEEeeCCCCcCc--cCc---chhhhccCCCCCCcEEEEecCChHHHHHh
Q 038234 163 KYLVVLDDVWTDDY--TKW---EPFQRCSANGQCGNNILVTTHKKTVARMM 208 (406)
Q Consensus 163 r~LlVlDdvw~~~~--~~~---~~l~~~l~~~~~gs~IivTtR~~~v~~~~ 208 (406)
+.|++||..-.... +.. ..+...+... .++.+|++|.+..++...
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 89999999743221 111 1122223222 477899999998887654
No 406
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.34 E-value=0.041 Score=52.39 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|.+..++.+.-.+.. .+..-+.+.|.+|+||||+|+.+.+-
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 4578998888877754442 22345899999999999999988554
No 407
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.34 E-value=0.036 Score=49.10 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.3
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++++|+++|..|+|||||..++.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999887654
No 408
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.33 E-value=0.027 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.4
Q ss_pred EEEeeeCCCcHHHHHHHHhcCCh
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999987654
No 409
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.31 E-value=0.059 Score=47.93 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=21.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
-..++|.|.+|+|||+|+..+.+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEEcCcccccchhhHHHHhccc
Confidence 45789999999999999998876554
No 410
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.30 E-value=0.049 Score=56.19 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=22.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345689999999999999999887643
No 411
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.055 Score=56.22 Aligned_cols=153 Identities=13% Similarity=0.100 Sum_probs=81.8
Q ss_pred Cceecchh---hHHHHHHHHhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHH----HHHHHHhcCCCCC
Q 038234 75 SEICGRDY---KKNELLSKLLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVA----KAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~~i~~~l~~~~~~ 144 (406)
.++.|-++ |++++++.|..+.. -+..-++-+.++|++|.|||-||++++-...+-|. .++.+-+....
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~-- 388 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG-- 388 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc--
Confidence 35677766 55556666654310 12455778899999999999999999988766221 11111111111
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCCCcC---------------ccCcchhhhccCCCCCCc--EEEEecCChHHHHH
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVWTDD---------------YTKWEPFQRCSANGQCGN--NILVTTHKKTVARM 207 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~---------------~~~~~~l~~~l~~~~~gs--~IivTtR~~~v~~~ 207 (406)
...+.......=.+.++.+.+|++.... ...++++..-++....++ .+|-+|...++...
T Consensus 389 ---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~ 465 (774)
T KOG0731|consen 389 ---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDP 465 (774)
T ss_pred ---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCH
Confidence 1112222233334678899998773211 011223333333332222 33445554444322
Q ss_pred --hcc---CCccccCCCChHHHHHhhhhhc
Q 038234 208 --MES---TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 --~~~---~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.+ ...+.++.-+.....++|.-++
T Consensus 466 allrpGRfdr~i~i~~p~~~~r~~i~~~h~ 495 (774)
T KOG0731|consen 466 ALLRPGRFDRQIQIDLPDVKGRASILKVHL 495 (774)
T ss_pred HhcCCCccccceeccCCchhhhHHHHHHHh
Confidence 111 6677777777777777776655
No 412
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.29 E-value=0.089 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++.|.|.+|+|||++|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6899999999999999887755
No 413
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.29 E-value=0.072 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+..+|.++|.+|+||||++..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998876653
No 414
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.25 E-value=0.083 Score=45.11 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=30.5
Q ss_pred HHhhccCcc-eeEEeeCCCC---cCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 155 ISESIEGKK-YLVVLDDVWT---DDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 155 l~~~l~~kr-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
.++.+...+ =|+|||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 89 a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 89 AKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 344444444 4999998721 11223345666666666788999999985
No 415
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.25 E-value=0.046 Score=44.70 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999887664
No 416
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.24 E-value=0.035 Score=51.30 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=17.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|.|-||+||||++..++
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA 22 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLS 22 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHH
Confidence 468888999999999886654
No 417
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.24 E-value=0.035 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+|.++|.+|+||||+|+.+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998765
No 418
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.24 E-value=0.043 Score=43.47 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
|+|+|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999864
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.24 E-value=0.043 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999776543
No 420
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.23 E-value=0.065 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~ 22 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI 22 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877643
No 421
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.22 E-value=0.12 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+++|+|+.|.|||||.+.+....
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 35689999999999999999887753
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.20 E-value=0.032 Score=42.14 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=17.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhc
Q 038234 104 MISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~ 124 (406)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999987644
No 423
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.19 E-value=0.038 Score=47.65 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++.|+|..|.|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999987654
No 424
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.19 E-value=0.038 Score=46.37 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|+++|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888754
No 425
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.19 E-value=0.031 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+++|+|..|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999887654
No 426
>PRK08149 ATP synthase SpaL; Validated
Probab=94.19 E-value=0.077 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...++|+|..|+|||||+..+++...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC
Confidence 45789999999999999999987654
No 427
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.14 E-value=0.052 Score=55.98 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=22.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+...++|+|+.|.|||||++.+.+-++
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 355889999999999999998876544
No 428
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.14 E-value=0.12 Score=51.80 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH---------------------------------------------------
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF--------------------------------------------------- 128 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------------------------------------- 128 (406)
.+..+++|+|.+|.||||+|..+..-...
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~ 112 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD 112 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHH
Q ss_pred ------------------HHHHHHHHHhcCCCCCCC--------CHHHHHHHHHhhccCcceeEEee------CCCCcCc
Q 038234 129 ------------------RVAKAIIAALGCETSNLG--------SLQSLVRCISESIEGKKYLVVLD------DVWTDDY 176 (406)
Q Consensus 129 ------------------~~~~~i~~~l~~~~~~~~--------~~~~~~~~l~~~l~~kr~LlVlD------dvw~~~~ 176 (406)
.-..+++..++...+... .-..-.-.+.-.|..++-|||.| |+ ...
T Consensus 113 Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDv--t~q 190 (539)
T COG1123 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDV--TTQ 190 (539)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCH--HHH
Q ss_pred cCcchhhhccCCCCCCcEEEEecCChHHHHHhc
Q 038234 177 TKWEPFQRCSANGQCGNNILVTTHKKTVARMME 209 (406)
Q Consensus 177 ~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~ 209 (406)
.+.-.+...+.... |..+|++|.+-.|...+.
T Consensus 191 ~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 191 AQILDLLKDLQREL-GMAVLFITHDLGVVAELA 222 (539)
T ss_pred HHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhc
No 429
>PLN02348 phosphoribulokinase
Probab=94.12 E-value=0.045 Score=52.81 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..-+|+|.|.+|.||||+|+.+.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999887754
No 430
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.1 Score=45.83 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=35.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCChH------HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKDF------RVAKAIIAALGCETSNLGSLQSLVRCIS 156 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 156 (406)
.+|+|=|++|.||+|+|+.++..... .+++.+.........+..+.+.+...+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~ 64 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAK 64 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 68999999999999999999988765 3344433333223334444444444433
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.11 E-value=0.18 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..+++++|.+|+||||++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 346999999999999998876644
No 432
>PRK06761 hypothetical protein; Provisional
Probab=94.11 E-value=0.036 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=22.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
++|.|.|++|+||||+++.+++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999987653
No 433
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.10 E-value=0.042 Score=56.75 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345689999999999999999887643
No 434
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.09 E-value=0.042 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=18.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHH
Q 038234 102 IKMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v 122 (406)
.+++.+.|.|||||||+|.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~ 22 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAAT 22 (322)
T ss_pred cEEEEEecCCcccHHHHHHHH
Confidence 578999999999999999763
No 435
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.09 E-value=0.059 Score=51.77 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHhhccCcceeEEeeCCCCcCccCcc--hhhhccCCC--CCCcEEEEecCChHHHHHhccCCcc
Q 038234 154 CISESIEGKKYLVVLDDVWTDDYTKWE--PFQRCSANG--QCGNNILVTTHKKTVARMMESTNFI 214 (406)
Q Consensus 154 ~l~~~l~~kr~LlVlDdvw~~~~~~~~--~l~~~l~~~--~~gs~IivTtR~~~v~~~~~~~~~~ 214 (406)
.|.+++..+.-+++.|..... .+..- .+...+.+. ..|+-+++.|+.+++...+.++.++
T Consensus 517 KLAkllaerpn~~~iDEF~Ah-LD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAH-LDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhh-cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 466677778889999976321 01111 111222221 2477788888888888877664443
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.08 E-value=0.036 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.|.|+|++|+||||+|+.+.+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998754
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=94.07 E-value=0.046 Score=39.94 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=15.8
Q ss_pred cEEEEEeeeCCCcHHHHHHH
Q 038234 102 IKMISIVGMGGIGKITLAQM 121 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~ 121 (406)
.+++.|.|.+|.|||+++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 44778899999999966544
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.06 E-value=0.11 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...++|+|..|+|||||++.+++...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 55789999999999999999987644
No 439
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.04 E-value=0.043 Score=48.69 Aligned_cols=19 Identities=47% Similarity=0.833 Sum_probs=16.8
Q ss_pred EEEEeeeCCCcHHHHHHHH
Q 038234 104 MISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v 122 (406)
.|+|+|-||+||||+|..+
T Consensus 2 kIaI~GKGG~GKTtiaall 20 (255)
T COG3640 2 KIAITGKGGVGKTTIAALL 20 (255)
T ss_pred eEEEecCCCccHHHHHHHH
Confidence 6899999999999998663
No 440
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.03 E-value=0.042 Score=47.76 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=52.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCChH--------------HHHHHHHHHhcCCCCC---CCCHHHHHHHHHhhccC--cce
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKDF--------------RVAKAIIAALGCETSN---LGSLQSLVRCISESIEG--KKY 164 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~--kr~ 164 (406)
++.|+|..|.||||+.+.+.-.... .....++..++..... ......-...+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 4679999999999999888622110 0111111111111000 11122222234444444 889
Q ss_pred eEEeeCCCCcC-ccCcch----hhhccCCCCCCcEEEEecCChHHHHHh
Q 038234 165 LVVLDDVWTDD-YTKWEP----FQRCSANGQCGNNILVTTHKKTVARMM 208 (406)
Q Consensus 165 LlVlDdvw~~~-~~~~~~----l~~~l~~~~~gs~IivTtR~~~v~~~~ 208 (406)
|+++|..-... ...-.. +...+.. ..++.+|++|.+.++...+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 99999884321 111111 1122221 1367899999998877654
No 441
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.02 E-value=0.034 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhc
Q 038234 104 MISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 442
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.00 E-value=0.1 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...++++|++|+|||||...+..+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4567899999999999999887653
No 443
>PRK14531 adenylate kinase; Provisional
Probab=93.99 E-value=0.041 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.|.|+|++|+||||+++.+.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999998876653
No 444
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.98 E-value=0.079 Score=47.25 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....++.|.|.+|+||||||.+++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999887543
No 445
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.98 E-value=0.038 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887654
No 446
>PRK01184 hypothetical protein; Provisional
Probab=93.97 E-value=0.042 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|+|+|++|+||||+|+ +++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 447
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.97 E-value=0.33 Score=42.68 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...|.++.|++|.||||+.+.+-+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4567999999999999999987654
No 448
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.97 E-value=0.12 Score=48.68 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=32.8
Q ss_pred cccCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 70 FFIDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 70 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
|..++.+.+ ..+....++..+.. .+.|.|.|.+|+||||+|+.++....
T Consensus 41 p~~d~~y~f-~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 41 PDIDPAYLF-DKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CCCCCCccC-CHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 334433333 33455666766653 23589999999999999999877543
No 449
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.97 E-value=0.044 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988654
No 450
>PRK13768 GTPase; Provisional
Probab=93.96 E-value=0.046 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
..++.|.|.||+||||++..+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~ 23 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALS 23 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHH
Confidence 3578999999999999997753
No 451
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.96 E-value=0.046 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.++|.+|+|||||+..+....
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887653
No 452
>PLN02165 adenylate isopentenyltransferase
Probab=93.96 E-value=0.045 Score=51.74 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+....+++|+|+.|+|||+||..++....
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 34456999999999999999998877643
No 453
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.96 E-value=0.099 Score=46.99 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
..+|+|.|++|+||||+|+.+.+...
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999998877653
No 454
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.95 E-value=0.36 Score=43.27 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+.+++.|+|+.|.||||+.+.+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHH
Confidence 46799999999999999988876
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.93 E-value=0.035 Score=46.52 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++.|+|.+|+|||+++..+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3689999999999999887554
No 456
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.93 E-value=0.044 Score=50.86 Aligned_cols=20 Identities=50% Similarity=0.710 Sum_probs=17.0
Q ss_pred EEEEEeeeCCCcHHHHHHHH
Q 038234 103 KMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v 122 (406)
++|+|.|-|||||||+|..+
T Consensus 3 ~vIav~~KGGVGKTT~a~nL 22 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNT 22 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHH
Confidence 58888899999999988643
No 457
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.93 E-value=0.055 Score=46.92 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....++.|.|.+|.||||+|+.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999887654
No 458
>PRK12338 hypothetical protein; Provisional
Probab=93.92 E-value=0.045 Score=51.45 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+.+|.|.|.+|+||||+|+.+.....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 56899999999999999999988754
No 459
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.91 E-value=0.092 Score=53.05 Aligned_cols=63 Identities=21% Similarity=0.399 Sum_probs=39.0
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH-HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEeeCCC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF-RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
.....+|.++|.+|.||||+|+.++..... .+-.+.+ ...+.......+.|...+- +|+|+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l----------g~~~~~~~~a~~~L~~G~s-VVIDaTn 429 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL----------GSTQNCLTACERALDQGKR-CAIDNTN 429 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH----------HHHHHHHHHHHHHHhCCCc-EEEECCC
Confidence 356789999999999999999988764321 1111111 1123344555666665544 5779884
No 460
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.91 E-value=0.037 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.-.+.|+|+|..|.|||||++++++...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4478899999999999999999887643
No 461
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.13 Score=46.10 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
--.|+|+.|.|||||.+.+.-+
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcc
Confidence 4579999999999999887654
No 462
>PRK02496 adk adenylate kinase; Provisional
Probab=93.89 E-value=0.042 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999887654
No 463
>PLN02796 D-glycerate 3-kinase
Probab=93.89 E-value=0.091 Score=49.93 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...-+|+|.|..|.|||||++.+....
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 356789999999999999998876543
No 464
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.89 E-value=0.042 Score=51.02 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=17.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|+|-||+||||++..+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA 22 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTV 22 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHH
Confidence 478888999999999886543
No 465
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.85 E-value=0.057 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+++|..|+|||||+..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998754
No 466
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=93.84 E-value=0.16 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++...++|+|..|.|||||++.+....
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999887654
No 467
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.80 E-value=0.04 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEeeeCCCcHHHHHHHHhcCCh
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999887654
No 468
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.77 E-value=0.051 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999888765
No 469
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.76 E-value=0.19 Score=49.96 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=33.4
Q ss_pred hhHHHHHHHHh--cCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 82 YKKNELLSKLL--SDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 82 ~~~~~l~~~L~--~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
+.+.++..||. ..-. ..-+.+++.|+|++|+||||..+.++.....
T Consensus 89 kKI~eVk~WL~~~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred HhHHHHHHHHHHHHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 45777888887 1110 1345679999999999999999888776544
No 470
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.74 E-value=0.054 Score=45.79 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++++|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999887653
No 471
>PRK14526 adenylate kinase; Provisional
Probab=93.73 E-value=0.13 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.|+|++|+||||+|+.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999887543
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.72 E-value=0.085 Score=45.86 Aligned_cols=36 Identities=28% Similarity=0.159 Sum_probs=25.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+++...... ...+.|+|..|.|||||++.+...
T Consensus 13 ~~~~~l~~~v~~-------g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 13 LQAAYLWLAVEA-------RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHHhC-------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 445555555432 458999999999999999886543
No 473
>PRK14528 adenylate kinase; Provisional
Probab=93.72 E-value=0.044 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999887654
No 474
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.71 E-value=0.061 Score=47.60 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
=+...++.|+|.+|+|||+++.++..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35578999999999999999987654
No 475
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.71 E-value=0.1 Score=45.87 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=29.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+++|.+..+..+.-.... .+-+.++|.+|+|||+||+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3567877666666555542 34789999999999999998754
No 476
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.70 E-value=0.053 Score=54.78 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=39.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
.+++--.+.++++..||...-. +....+++.+.|++|+||||.++.+++....
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455556778899999875322 1334669999999999999999999887654
No 477
>PTZ00494 tuzin-like protein; Provisional
Probab=93.69 E-value=1.1 Score=43.99 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=93.6
Q ss_pred cCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcC
Q 038234 72 IDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGC 140 (406)
Q Consensus 72 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~ 140 (406)
....++|.|+.+-.-+.+.|..-. ...++++.+.|.-|.||++|.+........ +-+..+.+.++-
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKALgV 444 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRALGV 444 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHhCC
Confidence 445678999988887777776543 466899999999999999999887776543 667788888876
Q ss_pred CCCCC-CC-HHHHHHHHH---hhccCcceeEEeeCCCCcC--ccCcchhhhccCCCCCCcEEEEecCChHHHHHhc---c
Q 038234 141 ETSNL-GS-LQSLVRCIS---ESIEGKKYLVVLDDVWTDD--YTKWEPFQRCSANGQCGNNILVTTHKKTVARMME---S 210 (406)
Q Consensus 141 ~~~~~-~~-~~~~~~~l~---~~l~~kr~LlVlDdvw~~~--~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~~---~ 210 (406)
...+. .+ ++.+.+... ....|+.-+||+-=- +-+ ...++.. ..|.....-|.|++.--.+.+....- .
T Consensus 445 ~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LPR 522 (664)
T PTZ00494 445 SNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSRR 522 (664)
T ss_pred CChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCcc
Confidence 54332 12 233333322 234567777777421 110 0011111 11223334567776655444333221 2
Q ss_pred CCccccCCCChHHHHHhhhh
Q 038234 211 TNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 211 ~~~~~l~~L~~~~a~~Lf~~ 230 (406)
...|-+.+++.++|.+.-.+
T Consensus 523 LDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 523 LDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred ceeEecCCcCHHHHHHHHhc
Confidence 56788899999998876555
No 478
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.69 E-value=0.21 Score=44.93 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------HHHHHHHHHhc
Q 038234 85 NELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------RVAKAIIAALG 139 (406)
Q Consensus 85 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~~~i~~~l~ 139 (406)
-.++..+.. -..+.+|.|=|.+|+||||+|..++++... +..++++..+-
T Consensus 77 Y~lwR~ir~-----~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii 132 (299)
T COG2074 77 YLLWRRIRK-----MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKII 132 (299)
T ss_pred HHHHHHHhc-----cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhC
Confidence 344555543 244779999999999999999999988754 44555555443
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.69 E-value=0.059 Score=51.79 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=54.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh----H---------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD----F---------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~----~---------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
...+.|.|+.|.||||+...+.+... . ++...-...+..+.............++..|...+=.|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 45899999999999999988765321 1 1110000000000000111223556677778888999999
Q ss_pred eCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 169 DDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 169 Ddvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
|.+. +.+.+...... ...|..|+.|.........
T Consensus 202 gEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 202 GEMR--DLETVELALTA---AETGHLVFGTLHTNSAAQT 235 (343)
T ss_pred eCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCHHHH
Confidence 9994 33334332222 2335556666666555443
No 480
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.69 E-value=0.048 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+.|+|.+|+||||+|+.+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999998754
No 481
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.68 E-value=0.056 Score=44.52 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999998887653
No 482
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.67 E-value=0.13 Score=49.49 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=38.9
Q ss_pred CcEEEEEeeeCCCcHHH-HHHHHhcCC------hH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhcc
Q 038234 101 PIKMISIVGMGGIGKIT-LAQMAYNDK------DF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIE 160 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTt-LA~~v~~~~------~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 160 (406)
+.++|.++|+.|||||| ||+..++.. ++ +-++....-++.......+..++...+... .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 47899999999999996 554443322 11 334444555555444445555555554433 2
Q ss_pred CcceeEEeeCC
Q 038234 161 GKKYLVVLDDV 171 (406)
Q Consensus 161 ~kr~LlVlDdv 171 (406)
+. =+|.+|-+
T Consensus 281 ~~-d~ILVDTa 290 (407)
T COG1419 281 DC-DVILVDTA 290 (407)
T ss_pred cC-CEEEEeCC
Confidence 22 34455654
No 483
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.67 E-value=0.042 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.+++|+|+.|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999998874
No 484
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.63 E-value=0.064 Score=48.66 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+.|+|+|-|||||||.+..+.
T Consensus 1 r~IAiYGKGGIGKST~~~Nls 21 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLS 21 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHH
Confidence 468999999999999886553
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.63 E-value=0.14 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...++|.|..|+|||||++.+.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 45789999999999999998887643
No 486
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.62 E-value=0.11 Score=45.05 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHhhccC-cceeEEeeCCCC---cCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 155 ISESIEG-KKYLVVLDDVWT---DDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 155 l~~~l~~-kr~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
.++.+.. +-=|+|||.+-. ...-..+.+...+.....+.-||+|-|+.
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3444444 445999998721 11223455666666666788999999985
No 487
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.61 E-value=0.063 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..++.+.|+.|+|||.||+.+.+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l 27 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELL 27 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999998776543
No 488
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.61 E-value=0.056 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|.++|.+|+|||||...+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3688999999999999888754
No 489
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.60 E-value=0.06 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+.|.|+|++|+||+||+..+.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999998774
No 490
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.59 E-value=0.05 Score=50.25 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.0
Q ss_pred EEEEeeeCCCcHHHHHHHHh
Q 038234 104 MISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~ 123 (406)
+|+|.|-||+||||+|..+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 68899999999999886653
No 491
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.56 E-value=0.057 Score=49.98 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|+|+|.+|+|||||+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999876543
No 492
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.56 E-value=0.057 Score=44.50 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.|.++|..|.|||||++.+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999987754
No 493
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.55 E-value=0.061 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|+++|.+|+|||||+..+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999887553
No 494
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.54 E-value=0.18 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
-..++|.|-.|+|||+|+..+.++.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~ 93 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQA 93 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhh
Confidence 4578999999999999998777665
No 495
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.54 E-value=0.058 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|+|.|..|+||||+++.+.+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999886543
No 496
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.53 E-value=0.063 Score=47.60 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+++|+|..|.|||||++.++..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988654
No 497
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.53 E-value=0.13 Score=48.43 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=43.9
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhcc-
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESIE- 160 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~- 160 (406)
-+..+++-|+|..|+||||||..+...... .+....+..++.+.. .++..++....+..+++
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirs 129 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRS 129 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHT
T ss_pred cccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhc
Confidence 355779999999999999999776654322 455666666665432 23344555555555554
Q ss_pred CcceeEEeeCC
Q 038234 161 GKKYLVVLDDV 171 (406)
Q Consensus 161 ~kr~LlVlDdv 171 (406)
+..-++|+|-|
T Consensus 130 g~~~lVVvDSv 140 (322)
T PF00154_consen 130 GAVDLVVVDSV 140 (322)
T ss_dssp TSESEEEEE-C
T ss_pred ccccEEEEecC
Confidence 34458899987
No 498
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.52 E-value=0.057 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++++|+|..|+|||||...+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 469999999999999999887554
No 499
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.51 E-value=0.061 Score=47.97 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||++.++..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 558999999999999999988655
No 500
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.51 E-value=0.06 Score=49.62 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|+|.|-||+||||++..+...
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57888899999999998776654
Done!