Query 038234
Match_columns 406
No_of_seqs 263 out of 2262
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-45 6.5E-50 373.3 14.6 279 78-379 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-37 3.6E-42 344.8 21.9 277 72-377 121-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 6.2E-37 2.1E-41 318.1 17.9 256 76-370 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 2E-33 6.8E-38 288.1 21.4 273 72-374 121-449 (591)
5 2qen_A Walker-type ATPase; unk 99.6 1.1E-13 3.7E-18 131.6 17.8 264 72-371 9-349 (350)
6 1w5s_A Origin recognition comp 99.5 2.8E-14 9.5E-19 139.1 12.8 272 74-350 21-372 (412)
7 2fna_A Conserved hypothetical 99.5 1.2E-12 4E-17 124.7 18.5 263 73-370 11-356 (357)
8 1fnn_A CDC6P, cell division co 99.3 2.3E-11 8E-16 117.3 13.9 297 75-376 17-386 (389)
9 2v1u_A Cell division control p 99.2 1E-10 3.5E-15 112.6 15.3 270 74-350 18-352 (387)
10 2qby_B CDC6 homolog 3, cell di 99.2 3.7E-10 1.3E-14 108.7 18.4 268 75-351 20-341 (384)
11 1njg_A DNA polymerase III subu 99.0 1.4E-10 4.9E-15 103.7 4.7 152 75-231 23-197 (250)
12 2qby_A CDC6 homolog 1, cell di 99.0 1.8E-10 6.1E-15 110.7 5.3 157 74-232 19-210 (386)
13 2chg_A Replication factor C sm 98.9 3.9E-10 1.3E-14 99.4 4.5 149 75-231 17-173 (226)
14 1sxj_B Activator 1 37 kDa subu 98.9 1.6E-09 5.3E-14 101.6 6.0 150 75-232 21-179 (323)
15 1hqc_A RUVB; extended AAA-ATPa 98.7 6.2E-09 2.1E-13 97.8 5.1 263 75-348 12-324 (324)
16 1jbk_A CLPB protein; beta barr 98.7 6.4E-09 2.2E-13 89.3 3.3 142 75-228 22-194 (195)
17 1iqp_A RFCS; clamp loader, ext 98.6 1.5E-08 5E-13 95.1 3.3 150 75-232 25-182 (327)
18 3te6_A Regulatory protein SIR3 98.6 7.9E-08 2.7E-12 89.5 7.9 153 76-232 21-211 (318)
19 1jr3_A DNA polymerase III subu 98.5 1.8E-07 6E-12 89.5 8.8 153 75-232 16-191 (373)
20 2chq_A Replication factor C sm 98.5 6.2E-08 2.1E-12 90.4 5.3 152 75-232 17-174 (319)
21 3h4m_A Proteasome-activating n 98.3 1.5E-07 5.1E-12 86.6 1.7 155 75-231 17-200 (285)
22 2p65_A Hypothetical protein PF 98.2 9E-08 3.1E-12 81.7 -1.0 45 75-125 22-66 (187)
23 3pvs_A Replication-associated 98.2 2.1E-06 7.3E-11 84.0 8.6 143 75-232 26-178 (447)
24 3pfi_A Holliday junction ATP-d 98.2 5.5E-06 1.9E-10 78.0 10.7 148 75-232 29-197 (338)
25 2z4s_A Chromosomal replication 98.2 3.8E-06 1.3E-10 82.2 9.8 122 102-232 130-276 (440)
26 3bos_A Putative DNA replicatio 98.2 3E-07 1E-11 81.9 1.7 141 75-231 28-186 (242)
27 3u61_B DNA polymerase accessor 98.2 6.2E-07 2.1E-11 84.1 3.0 139 75-229 26-175 (324)
28 1sxj_D Activator 1 41 kDa subu 98.2 9.7E-07 3.3E-11 83.6 4.2 150 75-232 37-205 (353)
29 3uk6_A RUVB-like 2; hexameric 98.1 6.8E-06 2.3E-10 78.3 9.5 47 75-125 44-93 (368)
30 2qz4_A Paraplegin; AAA+, SPG7, 98.1 3.5E-06 1.2E-10 76.2 6.7 152 75-231 6-189 (262)
31 1sxj_E Activator 1 40 kDa subu 98.1 2.5E-06 8.6E-11 80.8 5.8 153 75-232 14-206 (354)
32 3ec2_A DNA replication protein 98.1 3.8E-06 1.3E-10 71.5 6.1 109 80-201 19-142 (180)
33 1d2n_A N-ethylmaleimide-sensit 98.1 7.1E-07 2.4E-11 81.5 1.0 148 75-230 33-210 (272)
34 1sxj_A Activator 1 95 kDa subu 98.1 4.3E-06 1.5E-10 83.6 6.6 149 75-232 39-222 (516)
35 1l8q_A Chromosomal replication 98.0 1.6E-05 5.6E-10 74.4 9.0 134 84-232 23-179 (324)
36 3syl_A Protein CBBX; photosynt 98.0 8.4E-06 2.9E-10 75.6 6.6 153 76-232 32-217 (309)
37 1sxj_C Activator 1 40 kDa subu 97.9 5E-06 1.7E-10 78.5 4.6 150 75-232 25-182 (340)
38 3n70_A Transport activator; si 97.9 2.5E-06 8.7E-11 70.0 1.9 113 76-201 2-115 (145)
39 3eie_A Vacuolar protein sortin 97.9 1E-05 3.5E-10 75.8 5.7 154 75-232 18-197 (322)
40 3pxg_A Negative regulator of g 97.9 2.1E-05 7E-10 77.6 7.9 141 75-232 180-338 (468)
41 1qvr_A CLPB protein; coiled co 97.9 3.1E-06 1E-10 89.9 1.9 148 75-230 170-343 (854)
42 3co5_A Putative two-component 97.9 5E-06 1.7E-10 68.1 2.4 108 76-200 5-114 (143)
43 2gno_A DNA polymerase III, gam 97.8 5.1E-05 1.7E-09 70.3 9.3 145 79-232 1-152 (305)
44 1a5t_A Delta prime, HOLB; zinc 97.8 0.00015 5.1E-09 68.1 12.2 147 81-232 8-180 (334)
45 2w58_A DNAI, primosome compone 97.8 1.8E-05 6.3E-10 68.5 5.4 107 83-201 37-158 (202)
46 2qp9_X Vacuolar protein sortin 97.8 1.3E-05 4.5E-10 76.1 4.8 155 75-232 51-230 (355)
47 3cf0_A Transitional endoplasmi 97.8 5.2E-05 1.8E-09 70.2 8.2 152 75-231 15-198 (301)
48 1ofh_A ATP-dependent HSL prote 97.8 1.2E-05 4E-10 74.5 3.4 51 75-125 15-73 (310)
49 1r6b_X CLPA protein; AAA+, N-t 97.8 1.4E-05 4.7E-10 83.8 4.3 149 75-231 186-361 (758)
50 3pxi_A Negative regulator of g 97.7 6.9E-05 2.4E-09 78.5 8.1 139 75-232 180-338 (758)
51 2r62_A Cell division protease 97.6 6.5E-06 2.2E-10 74.8 -0.3 51 75-125 11-67 (268)
52 2bjv_A PSP operon transcriptio 97.6 2.1E-05 7.3E-10 71.2 2.9 47 76-126 7-53 (265)
53 3hu3_A Transitional endoplasmi 97.6 1.3E-05 4.3E-10 79.4 1.0 157 75-232 204-385 (489)
54 4fcw_A Chaperone protein CLPB; 97.6 2.9E-05 9.8E-10 72.0 3.2 50 76-125 18-70 (311)
55 1xwi_A SKD1 protein; VPS4B, AA 97.5 9E-05 3.1E-09 69.3 6.0 151 75-232 12-192 (322)
56 3d8b_A Fidgetin-like protein 1 97.5 2.7E-05 9.3E-10 73.9 2.2 155 75-231 84-263 (357)
57 3b9p_A CG5977-PA, isoform A; A 97.5 4.2E-05 1.4E-09 70.5 3.3 150 75-231 21-201 (297)
58 1ojl_A Transcriptional regulat 97.5 3.6E-05 1.2E-09 71.4 2.6 47 75-125 2-48 (304)
59 3vfd_A Spastin; ATPase, microt 97.5 1.8E-05 6.3E-10 76.0 0.3 153 75-232 115-295 (389)
60 2zan_A Vacuolar protein sortin 97.4 0.0003 1E-08 68.8 8.4 149 75-232 134-314 (444)
61 3t15_A Ribulose bisphosphate c 97.3 0.00012 4E-09 67.5 3.3 27 100-126 34-60 (293)
62 4b4t_J 26S protease regulatory 97.2 0.00019 6.6E-09 68.4 4.0 155 75-230 148-330 (405)
63 3pxi_A Negative regulator of g 97.2 7.8E-05 2.7E-09 78.0 1.0 151 75-230 491-673 (758)
64 2kjq_A DNAA-related protein; s 97.1 8.6E-05 3E-09 61.1 0.7 24 102-125 36-59 (149)
65 2qgz_A Helicase loader, putati 97.1 0.00016 5.6E-09 67.0 2.2 42 82-126 135-176 (308)
66 2ce7_A Cell division protein F 97.0 0.00011 3.8E-09 72.1 0.3 156 75-231 16-198 (476)
67 3m6a_A ATP-dependent protease 97.0 0.0008 2.7E-08 67.4 6.1 151 76-232 82-266 (543)
68 1um8_A ATP-dependent CLP prote 96.9 0.00031 1.1E-08 67.0 2.4 25 102-126 72-96 (376)
69 3cf2_A TER ATPase, transitiona 96.8 0.00091 3.1E-08 69.6 5.2 157 75-232 204-385 (806)
70 4b4t_L 26S protease subunit RP 96.8 0.00018 6E-09 69.7 -0.3 97 75-173 181-285 (437)
71 1rz3_A Hypothetical protein rb 96.8 0.0015 5.2E-08 56.3 5.6 42 80-124 3-44 (201)
72 1qvr_A CLPB protein; coiled co 96.8 0.00056 1.9E-08 72.5 3.3 50 76-125 559-611 (854)
73 1r6b_X CLPA protein; AAA+, N-t 96.8 0.00029 1E-08 73.7 1.1 51 75-125 458-511 (758)
74 4b4t_K 26S protease regulatory 96.8 0.00019 6.4E-09 69.4 -0.5 97 75-172 172-275 (428)
75 4b4t_M 26S protease regulatory 96.7 0.00016 5.6E-09 69.9 -1.3 96 75-172 181-284 (434)
76 2c9o_A RUVB-like 1; hexameric 96.7 0.00035 1.2E-08 68.5 1.0 92 75-172 37-136 (456)
77 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00044 1.5E-08 63.8 1.5 67 102-172 123-192 (331)
78 4b4t_H 26S protease regulatory 96.7 0.00037 1.3E-08 67.5 0.8 96 76-172 210-312 (467)
79 4b4t_I 26S protease regulatory 96.4 0.00034 1.1E-08 67.1 -1.4 96 75-172 182-285 (437)
80 3c8u_A Fructokinase; YP_612366 96.3 0.0031 1.1E-07 54.6 4.5 39 83-125 7-45 (208)
81 1ypw_A Transitional endoplasmi 96.3 0.0017 5.8E-08 68.2 3.1 157 75-232 204-385 (806)
82 1zp6_A Hypothetical protein AT 96.1 0.0035 1.2E-07 53.2 3.9 26 101-126 8-33 (191)
83 3lw7_A Adenylate kinase relate 96.1 0.0026 8.8E-08 52.9 2.8 20 103-122 2-21 (179)
84 1qhx_A CPT, protein (chloramph 96.1 0.0025 8.7E-08 53.4 2.7 23 103-125 4-26 (178)
85 2cvh_A DNA repair and recombin 96.1 0.017 5.8E-07 50.0 8.0 24 101-124 19-42 (220)
86 2r44_A Uncharacterized protein 96.0 0.0038 1.3E-07 58.2 3.9 43 75-125 27-69 (331)
87 1odf_A YGR205W, hypothetical 3 96.0 0.0042 1.4E-07 56.9 4.0 27 99-125 28-54 (290)
88 3kb2_A SPBC2 prophage-derived 96.0 0.003 1E-07 52.5 2.7 23 103-125 2-24 (173)
89 1ly1_A Polynucleotide kinase; 96.0 0.0037 1.3E-07 52.4 3.1 22 103-124 3-24 (181)
90 1lv7_A FTSH; alpha/beta domain 96.0 0.0053 1.8E-07 54.9 4.3 93 75-172 12-114 (257)
91 3vaa_A Shikimate kinase, SK; s 96.0 0.0034 1.1E-07 54.0 2.9 24 102-125 25-48 (199)
92 2b8t_A Thymidine kinase; deoxy 95.9 0.0025 8.6E-08 55.9 1.7 100 100-202 10-126 (223)
93 3hws_A ATP-dependent CLP prote 95.9 0.0058 2E-07 57.8 4.5 51 76-126 16-75 (363)
94 1in4_A RUVB, holliday junction 95.9 0.0034 1.2E-07 58.7 2.8 148 75-232 25-193 (334)
95 3fwy_A Light-independent proto 95.8 0.0047 1.6E-07 57.2 3.4 23 100-122 46-68 (314)
96 3uie_A Adenylyl-sulfate kinase 95.8 0.0051 1.7E-07 52.8 3.5 25 101-125 24-48 (200)
97 2rhm_A Putative kinase; P-loop 95.8 0.0053 1.8E-07 52.1 3.5 25 101-125 4-28 (193)
98 3tqc_A Pantothenate kinase; bi 95.8 0.0088 3E-07 55.5 5.1 44 79-124 71-114 (321)
99 1kgd_A CASK, peripheral plasma 95.8 0.0047 1.6E-07 52.2 3.0 23 102-124 5-27 (180)
100 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.007 2.4E-07 59.7 4.6 44 75-126 22-65 (500)
101 1gvn_B Zeta; postsegregational 95.8 0.0087 3E-07 54.7 4.9 42 83-125 15-56 (287)
102 1nks_A Adenylate kinase; therm 95.7 0.0055 1.9E-07 51.9 3.3 24 103-126 2-25 (194)
103 1knq_A Gluconate kinase; ALFA/ 95.7 0.0064 2.2E-07 50.8 3.6 25 100-124 6-30 (175)
104 2ga8_A Hypothetical 39.9 kDa p 95.7 0.01 3.4E-07 55.6 5.1 51 78-130 2-52 (359)
105 1kag_A SKI, shikimate kinase I 95.7 0.0039 1.3E-07 52.0 2.1 23 103-125 5-27 (173)
106 3tau_A Guanylate kinase, GMP k 95.7 0.0057 2E-07 52.9 3.2 26 101-126 7-32 (208)
107 1g5t_A COB(I)alamin adenosyltr 95.7 0.016 5.6E-07 49.4 5.9 49 154-202 111-163 (196)
108 3trf_A Shikimate kinase, SK; a 95.7 0.0049 1.7E-07 52.0 2.6 24 102-125 5-28 (185)
109 1uf9_A TT1252 protein; P-loop, 95.6 0.0074 2.5E-07 51.6 3.7 26 100-125 6-31 (203)
110 2p5t_B PEZT; postsegregational 95.6 0.011 3.6E-07 53.0 4.8 43 83-126 14-56 (253)
111 2qt1_A Nicotinamide riboside k 95.6 0.0087 3E-07 51.6 4.1 27 100-126 19-45 (207)
112 4eun_A Thermoresistant glucoki 95.6 0.0057 2E-07 52.5 2.9 25 101-125 28-52 (200)
113 3t61_A Gluconokinase; PSI-biol 95.5 0.0051 1.8E-07 52.8 2.4 24 102-125 18-41 (202)
114 3asz_A Uridine kinase; cytidin 95.5 0.0079 2.7E-07 51.9 3.6 26 100-125 4-29 (211)
115 2yvu_A Probable adenylyl-sulfa 95.5 0.0088 3E-07 50.6 3.8 26 100-125 11-36 (186)
116 3tr0_A Guanylate kinase, GMP k 95.5 0.007 2.4E-07 51.9 3.2 23 102-124 7-29 (205)
117 1uj2_A Uridine-cytidine kinase 95.5 0.0069 2.4E-07 54.1 3.2 26 100-125 20-45 (252)
118 1kht_A Adenylate kinase; phosp 95.5 0.006 2.1E-07 51.6 2.7 23 103-125 4-26 (192)
119 2px0_A Flagellar biosynthesis 95.5 0.021 7.3E-07 52.3 6.5 24 101-124 104-127 (296)
120 3sr0_A Adenylate kinase; phosp 95.5 0.013 4.3E-07 50.7 4.7 24 104-127 2-25 (206)
121 3cf2_A TER ATPase, transitiona 95.5 0.0072 2.5E-07 62.9 3.6 99 73-172 475-580 (806)
122 2j41_A Guanylate kinase; GMP, 95.5 0.0075 2.6E-07 51.8 3.2 25 102-126 6-30 (207)
123 1ukz_A Uridylate kinase; trans 95.5 0.0082 2.8E-07 51.5 3.5 27 100-126 13-39 (203)
124 2qor_A Guanylate kinase; phosp 95.5 0.0057 1.9E-07 52.7 2.4 25 101-125 11-35 (204)
125 4gp7_A Metallophosphoesterase; 95.5 0.0068 2.3E-07 50.7 2.8 23 101-123 8-30 (171)
126 2c95_A Adenylate kinase 1; tra 95.5 0.0075 2.6E-07 51.2 3.1 24 102-125 9-32 (196)
127 1tev_A UMP-CMP kinase; ploop, 95.4 0.0076 2.6E-07 51.1 3.1 24 102-125 3-26 (196)
128 1y63_A LMAJ004144AAA protein; 95.4 0.0072 2.5E-07 51.1 2.9 25 101-125 9-33 (184)
129 1zuh_A Shikimate kinase; alpha 95.4 0.0067 2.3E-07 50.4 2.6 26 100-125 5-30 (168)
130 3iij_A Coilin-interacting nucl 95.4 0.0062 2.1E-07 51.2 2.4 24 102-125 11-34 (180)
131 2jaq_A Deoxyguanosine kinase; 95.4 0.007 2.4E-07 51.8 2.7 22 104-125 2-23 (205)
132 2ze6_A Isopentenyl transferase 95.4 0.0079 2.7E-07 53.8 3.1 23 103-125 2-24 (253)
133 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0084 2.9E-07 53.9 3.3 24 102-125 4-27 (260)
134 1vma_A Cell division protein F 95.4 0.035 1.2E-06 51.1 7.5 43 83-125 83-127 (306)
135 2bdt_A BH3686; alpha-beta prot 95.3 0.0092 3.1E-07 50.6 3.3 22 103-124 3-24 (189)
136 3cm0_A Adenylate kinase; ATP-b 95.3 0.0094 3.2E-07 50.2 3.3 23 102-124 4-26 (186)
137 1g8p_A Magnesium-chelatase 38 95.3 0.0075 2.6E-07 56.4 2.8 46 75-126 24-69 (350)
138 1ixz_A ATP-dependent metallopr 95.3 0.0086 2.9E-07 53.4 3.0 52 75-126 16-73 (254)
139 2plr_A DTMP kinase, probable t 95.3 0.0097 3.3E-07 51.2 3.3 24 102-125 4-27 (213)
140 1via_A Shikimate kinase; struc 95.3 0.0066 2.2E-07 50.8 2.1 22 104-125 6-27 (175)
141 2cdn_A Adenylate kinase; phosp 95.3 0.0092 3.2E-07 51.1 3.1 26 100-125 18-43 (201)
142 3hr8_A Protein RECA; alpha and 95.3 0.016 5.6E-07 54.4 5.0 73 100-172 59-149 (356)
143 2if2_A Dephospho-COA kinase; a 95.2 0.0094 3.2E-07 51.2 3.0 22 103-124 2-23 (204)
144 2bwj_A Adenylate kinase 5; pho 95.2 0.009 3.1E-07 50.9 2.9 24 102-125 12-35 (199)
145 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.7E-07 50.9 3.4 22 103-124 3-24 (206)
146 2iyv_A Shikimate kinase, SK; t 95.2 0.0063 2.2E-07 51.3 1.8 22 104-125 4-25 (184)
147 3tlx_A Adenylate kinase 2; str 95.2 0.014 4.7E-07 51.9 4.1 25 101-125 28-52 (243)
148 1qf9_A UMP/CMP kinase, protein 95.2 0.013 4.5E-07 49.5 3.8 24 102-125 6-29 (194)
149 1aky_A Adenylate kinase; ATP:A 95.2 0.0091 3.1E-07 52.0 2.9 24 102-125 4-27 (220)
150 3a00_A Guanylate kinase, GMP k 95.2 0.0078 2.7E-07 51.0 2.3 23 103-125 2-24 (186)
151 1cke_A CK, MSSA, protein (cyti 95.2 0.0096 3.3E-07 52.0 2.9 24 103-126 6-29 (227)
152 1ye8_A Protein THEP1, hypothet 95.2 0.01 3.4E-07 50.1 2.9 23 104-126 2-24 (178)
153 2pez_A Bifunctional 3'-phospho 95.1 0.012 4E-07 49.4 3.3 25 101-125 4-28 (179)
154 1sq5_A Pantothenate kinase; P- 95.1 0.026 8.8E-07 52.1 5.9 25 100-124 78-102 (308)
155 3tui_C Methionine import ATP-b 95.1 0.035 1.2E-06 52.2 6.8 24 102-125 54-77 (366)
156 1lvg_A Guanylate kinase, GMP k 95.1 0.0084 2.9E-07 51.4 2.3 23 102-124 4-26 (198)
157 2hf9_A Probable hydrogenase ni 95.1 0.018 6.2E-07 50.1 4.5 24 101-124 37-60 (226)
158 2pt5_A Shikimate kinase, SK; a 95.1 0.01 3.4E-07 49.2 2.6 22 104-125 2-23 (168)
159 1e6c_A Shikimate kinase; phosp 95.1 0.008 2.7E-07 50.0 2.1 23 103-125 3-25 (173)
160 1nn5_A Similar to deoxythymidy 95.1 0.012 4E-07 50.9 3.1 24 102-125 9-32 (215)
161 2vli_A Antibiotic resistance p 95.1 0.0067 2.3E-07 51.0 1.5 24 102-125 5-28 (183)
162 2pbr_A DTMP kinase, thymidylat 95.0 0.01 3.5E-07 50.3 2.6 22 104-125 2-23 (195)
163 1xjc_A MOBB protein homolog; s 95.0 0.011 3.7E-07 49.3 2.7 23 102-124 4-26 (169)
164 2wwf_A Thymidilate kinase, put 95.0 0.012 4E-07 50.7 3.0 24 102-125 10-33 (212)
165 1ex7_A Guanylate kinase; subst 95.0 0.0092 3.1E-07 50.7 2.1 23 103-125 2-24 (186)
166 3ney_A 55 kDa erythrocyte memb 95.0 0.012 4E-07 50.5 2.8 25 101-125 18-42 (197)
167 2bbw_A Adenylate kinase 4, AK4 95.0 0.012 4.2E-07 52.2 3.1 22 102-123 27-48 (246)
168 3aez_A Pantothenate kinase; tr 95.0 0.015 5E-07 53.8 3.6 25 100-124 88-112 (312)
169 2grj_A Dephospho-COA kinase; T 95.0 0.015 5E-07 49.7 3.4 26 100-125 10-35 (192)
170 1tue_A Replication protein E1; 95.0 0.018 6.2E-07 49.5 3.9 38 83-125 44-81 (212)
171 1gtv_A TMK, thymidylate kinase 94.9 0.0086 2.9E-07 51.7 1.9 21 104-124 2-22 (214)
172 3umf_A Adenylate kinase; rossm 94.9 0.015 5.2E-07 50.7 3.3 29 99-127 26-54 (217)
173 2jeo_A Uridine-cytidine kinase 94.9 0.016 5.5E-07 51.4 3.6 24 101-124 24-47 (245)
174 2v54_A DTMP kinase, thymidylat 94.9 0.015 5.1E-07 49.7 3.3 25 102-126 4-28 (204)
175 2f6r_A COA synthase, bifunctio 94.9 0.018 6E-07 52.4 3.9 25 100-124 73-97 (281)
176 1zd8_A GTP:AMP phosphotransfer 94.8 0.013 4.5E-07 51.3 2.9 25 102-126 7-31 (227)
177 3be4_A Adenylate kinase; malar 94.8 0.012 4E-07 51.3 2.5 24 102-125 5-28 (217)
178 1znw_A Guanylate kinase, GMP k 94.8 0.014 4.9E-07 50.3 3.0 23 102-124 20-42 (207)
179 2wsm_A Hydrogenase expression/ 94.8 0.019 6.6E-07 49.7 3.8 39 80-124 14-52 (221)
180 3jvv_A Twitching mobility prot 94.8 0.026 8.9E-07 53.1 4.9 101 102-207 123-236 (356)
181 1z6g_A Guanylate kinase; struc 94.7 0.013 4.3E-07 51.2 2.4 23 102-124 23-45 (218)
182 1m7g_A Adenylylsulfate kinase; 94.7 0.017 5.9E-07 49.9 3.3 26 101-126 24-49 (211)
183 4e22_A Cytidylate kinase; P-lo 94.7 0.016 5.5E-07 51.7 3.1 24 102-125 27-50 (252)
184 3p32_A Probable GTPase RV1496/ 94.7 0.031 1.1E-06 52.6 5.3 36 84-123 65-100 (355)
185 1rj9_A FTSY, signal recognitio 94.7 0.017 5.7E-07 53.2 3.3 24 101-124 101-124 (304)
186 1s96_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 50.5 3.1 26 100-125 14-39 (219)
187 1zak_A Adenylate kinase; ATP:A 94.7 0.014 4.8E-07 50.9 2.5 24 102-125 5-28 (222)
188 1htw_A HI0065; nucleotide-bind 94.6 0.022 7.5E-07 47.0 3.5 25 100-124 31-55 (158)
189 3fb4_A Adenylate kinase; psych 94.6 0.016 5.6E-07 50.1 2.8 22 104-125 2-23 (216)
190 2z0h_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 49.0 2.8 22 104-125 2-23 (197)
191 1vht_A Dephospho-COA kinase; s 94.6 0.021 7.2E-07 49.5 3.4 23 102-124 4-26 (218)
192 3r20_A Cytidylate kinase; stru 94.6 0.023 8E-07 50.0 3.7 24 102-125 9-32 (233)
193 2ged_A SR-beta, signal recogni 94.5 0.03 1E-06 47.1 4.3 27 100-126 46-72 (193)
194 2x8a_A Nuclear valosin-contain 94.5 0.015 5.3E-07 52.6 2.6 52 75-126 10-68 (274)
195 3dl0_A Adenylate kinase; phosp 94.5 0.018 6E-07 49.9 2.8 23 104-126 2-24 (216)
196 4a74_A DNA repair and recombin 94.5 0.02 7E-07 49.8 3.2 25 100-124 23-47 (231)
197 1xp8_A RECA protein, recombina 94.4 0.032 1.1E-06 52.7 4.7 72 101-172 73-162 (366)
198 3end_A Light-independent proto 94.4 0.023 8E-07 52.2 3.4 26 99-124 38-63 (307)
199 3kl4_A SRP54, signal recogniti 94.3 0.068 2.3E-06 51.6 6.7 25 100-124 95-119 (433)
200 1zu4_A FTSY; GTPase, signal re 94.3 0.052 1.8E-06 50.3 5.8 25 100-124 103-127 (320)
201 1jr3_D DNA polymerase III, del 94.3 0.21 7.2E-06 46.4 10.0 128 102-232 18-155 (343)
202 2ehv_A Hypothetical protein PH 94.3 0.019 6.7E-07 50.7 2.7 23 101-123 29-51 (251)
203 3b9q_A Chloroplast SRP recepto 94.3 0.026 8.9E-07 51.9 3.5 26 100-125 98-123 (302)
204 1sky_E F1-ATPase, F1-ATP synth 94.3 0.065 2.2E-06 52.0 6.5 23 103-125 152-174 (473)
205 3ake_A Cytidylate kinase; CMP 94.2 0.022 7.6E-07 48.7 2.8 22 104-125 4-25 (208)
206 2xxa_A Signal recognition part 94.2 0.051 1.7E-06 52.6 5.6 41 83-123 78-121 (433)
207 3a8t_A Adenylate isopentenyltr 94.2 0.032 1.1E-06 51.8 3.9 26 102-127 40-65 (339)
208 1yrb_A ATP(GTP)binding protein 94.2 0.04 1.4E-06 49.1 4.5 25 99-123 11-35 (262)
209 2f1r_A Molybdopterin-guanine d 94.1 0.015 5.1E-07 48.7 1.5 23 103-125 3-25 (171)
210 1iy2_A ATP-dependent metallopr 94.1 0.022 7.4E-07 51.6 2.6 52 75-126 40-97 (278)
211 3lnc_A Guanylate kinase, GMP k 94.1 0.014 4.9E-07 51.2 1.4 22 102-123 27-48 (231)
212 3io5_A Recombination and repai 94.1 0.054 1.8E-06 49.8 5.1 70 104-173 30-122 (333)
213 3e70_C DPA, signal recognition 94.1 0.031 1.1E-06 52.0 3.7 26 100-125 127-152 (328)
214 3nwj_A ATSK2; P loop, shikimat 94.0 0.019 6.6E-07 51.2 2.1 23 102-124 48-70 (250)
215 1ak2_A Adenylate kinase isoenz 94.0 0.027 9.3E-07 49.5 3.0 25 102-126 16-40 (233)
216 1e4v_A Adenylate kinase; trans 94.0 0.028 9.5E-07 48.6 3.0 22 104-125 2-23 (214)
217 3d3q_A TRNA delta(2)-isopenten 93.9 0.028 9.7E-07 52.3 3.1 24 103-126 8-31 (340)
218 2i3b_A HCR-ntpase, human cance 93.9 0.025 8.5E-07 48.2 2.5 22 104-125 3-24 (189)
219 3b5x_A Lipid A export ATP-bind 93.9 0.056 1.9E-06 54.5 5.4 26 101-126 368-393 (582)
220 3zvl_A Bifunctional polynucleo 93.9 0.026 9E-07 54.4 2.9 27 100-126 256-282 (416)
221 2xb4_A Adenylate kinase; ATP-b 93.9 0.029 9.9E-07 49.0 2.9 22 104-125 2-23 (223)
222 1ltq_A Polynucleotide kinase; 93.9 0.03 1E-06 51.2 3.1 23 103-125 3-25 (301)
223 3tif_A Uncharacterized ABC tra 93.9 0.03 1E-06 49.4 3.0 24 102-125 31-54 (235)
224 2onk_A Molybdate/tungstate ABC 93.9 0.03 1E-06 49.6 3.0 23 103-125 25-47 (240)
225 3dm5_A SRP54, signal recogniti 93.9 0.071 2.4E-06 51.5 5.8 24 101-124 99-122 (443)
226 1g41_A Heat shock protein HSLU 93.8 0.057 2E-06 52.2 5.1 52 75-126 15-74 (444)
227 1np6_A Molybdopterin-guanine d 93.8 0.029 1E-06 47.0 2.7 23 102-124 6-28 (174)
228 3exa_A TRNA delta(2)-isopenten 93.8 0.035 1.2E-06 51.0 3.3 26 102-127 3-28 (322)
229 2pcj_A ABC transporter, lipopr 93.8 0.033 1.1E-06 48.8 3.1 24 102-125 30-53 (224)
230 2dhr_A FTSH; AAA+ protein, hex 93.8 0.041 1.4E-06 54.2 4.0 153 75-232 31-214 (499)
231 2og2_A Putative signal recogni 93.8 0.037 1.3E-06 52.1 3.5 26 100-125 155-180 (359)
232 1a7j_A Phosphoribulokinase; tr 93.7 0.016 5.4E-07 53.0 0.9 25 101-125 4-28 (290)
233 3k1j_A LON protease, ATP-depen 93.7 0.043 1.5E-06 55.6 4.2 44 75-126 41-84 (604)
234 3crm_A TRNA delta(2)-isopenten 93.7 0.034 1.2E-06 51.4 3.1 25 102-126 5-29 (323)
235 1oix_A RAS-related protein RAB 93.7 0.039 1.3E-06 46.7 3.3 24 102-125 29-52 (191)
236 2wji_A Ferrous iron transport 93.7 0.046 1.6E-06 44.9 3.7 23 103-125 4-26 (165)
237 2cbz_A Multidrug resistance-as 93.7 0.034 1.2E-06 49.1 3.0 25 102-126 31-55 (237)
238 2yhs_A FTSY, cell division pro 93.7 0.068 2.3E-06 52.3 5.3 26 100-125 291-316 (503)
239 2zej_A Dardarin, leucine-rich 93.7 0.032 1.1E-06 46.8 2.7 22 104-125 4-25 (184)
240 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.036 1.2E-06 48.2 3.0 23 102-124 23-45 (235)
241 2dyk_A GTP-binding protein; GT 93.6 0.044 1.5E-06 44.4 3.4 24 103-126 2-25 (161)
242 3e1s_A Exodeoxyribonuclease V, 93.6 0.05 1.7E-06 54.7 4.4 22 103-124 205-226 (574)
243 2vp4_A Deoxynucleoside kinase; 93.6 0.039 1.3E-06 48.4 3.2 27 99-125 17-43 (230)
244 1q3t_A Cytidylate kinase; nucl 93.6 0.036 1.2E-06 48.8 3.0 27 99-125 13-39 (236)
245 1mv5_A LMRA, multidrug resista 93.6 0.042 1.5E-06 48.7 3.5 25 101-125 27-51 (243)
246 2qmh_A HPR kinase/phosphorylas 93.6 0.041 1.4E-06 47.0 3.2 24 102-125 34-57 (205)
247 3foz_A TRNA delta(2)-isopenten 93.6 0.045 1.5E-06 50.2 3.6 27 100-126 8-34 (316)
248 3gmt_A Adenylate kinase; ssgci 93.6 0.11 3.7E-06 45.5 6.0 26 101-126 7-32 (230)
249 1n0w_A DNA repair protein RAD5 93.6 0.038 1.3E-06 48.5 3.1 24 101-124 23-46 (243)
250 1b0u_A Histidine permease; ABC 93.5 0.037 1.3E-06 49.7 3.0 24 102-125 32-55 (262)
251 1cr0_A DNA primase/helicase; R 93.5 0.041 1.4E-06 50.2 3.3 24 101-124 34-57 (296)
252 1cp2_A CP2, nitrogenase iron p 93.4 0.047 1.6E-06 48.9 3.5 21 103-123 2-22 (269)
253 4a1f_A DNAB helicase, replicat 93.4 0.14 4.7E-06 47.7 6.7 25 101-125 45-69 (338)
254 2olj_A Amino acid ABC transpor 93.3 0.042 1.4E-06 49.4 3.0 25 101-125 49-73 (263)
255 3b85_A Phosphate starvation-in 93.3 0.033 1.1E-06 48.2 2.2 22 103-124 23-44 (208)
256 4eaq_A DTMP kinase, thymidylat 93.3 0.05 1.7E-06 47.8 3.4 25 101-125 25-49 (229)
257 3gfo_A Cobalt import ATP-bindi 93.3 0.041 1.4E-06 49.8 2.9 24 102-125 34-57 (275)
258 2v3c_C SRP54, signal recogniti 93.3 0.053 1.8E-06 52.4 3.9 25 101-125 98-122 (432)
259 2afh_E Nitrogenase iron protei 93.3 0.052 1.8E-06 49.3 3.6 23 102-124 2-24 (289)
260 2nzj_A GTP-binding protein REM 93.3 0.063 2.1E-06 44.1 3.8 25 102-126 4-28 (175)
261 2ce2_X GTPase HRAS; signaling 93.3 0.044 1.5E-06 44.4 2.9 22 104-125 5-26 (166)
262 1nlf_A Regulatory protein REPA 93.2 0.046 1.6E-06 49.4 3.2 23 102-124 30-52 (279)
263 2zu0_C Probable ATP-dependent 93.2 0.047 1.6E-06 49.1 3.2 24 102-125 46-69 (267)
264 2v9p_A Replication protein E1; 93.2 0.044 1.5E-06 50.3 3.0 25 100-124 124-148 (305)
265 4g1u_C Hemin import ATP-bindin 93.2 0.044 1.5E-06 49.4 2.9 24 102-125 37-60 (266)
266 2ghi_A Transport protein; mult 93.2 0.045 1.5E-06 49.1 3.0 24 102-125 46-69 (260)
267 1vpl_A ABC transporter, ATP-bi 93.2 0.046 1.6E-06 48.9 3.0 24 102-125 41-64 (256)
268 1ls1_A Signal recognition part 93.2 0.051 1.7E-06 49.7 3.4 25 101-125 97-121 (295)
269 1z2a_A RAS-related protein RAB 93.2 0.056 1.9E-06 44.0 3.4 24 102-125 5-28 (168)
270 1ji0_A ABC transporter; ATP bi 93.2 0.045 1.5E-06 48.5 2.9 24 102-125 32-55 (240)
271 2ocp_A DGK, deoxyguanosine kin 93.2 0.054 1.9E-06 47.8 3.4 24 102-125 2-25 (241)
272 1svm_A Large T antigen; AAA+ f 93.2 0.074 2.5E-06 50.4 4.6 25 100-124 167-191 (377)
273 2wjg_A FEOB, ferrous iron tran 93.1 0.061 2.1E-06 45.0 3.6 24 102-125 7-30 (188)
274 2ixe_A Antigen peptide transpo 93.1 0.046 1.6E-06 49.3 3.0 25 102-126 45-69 (271)
275 2d2e_A SUFC protein; ABC-ATPas 93.1 0.048 1.6E-06 48.6 3.0 24 102-125 29-52 (250)
276 2f9l_A RAB11B, member RAS onco 93.1 0.043 1.5E-06 46.7 2.6 24 102-125 5-28 (199)
277 2eyu_A Twitching motility prot 93.1 0.056 1.9E-06 48.5 3.5 101 102-207 25-138 (261)
278 1g6h_A High-affinity branched- 93.1 0.045 1.5E-06 49.0 2.9 24 102-125 33-56 (257)
279 2pze_A Cystic fibrosis transme 93.1 0.041 1.4E-06 48.3 2.5 24 102-125 34-57 (229)
280 2j37_W Signal recognition part 93.1 0.1 3.6E-06 51.3 5.6 24 100-123 99-122 (504)
281 2ff7_A Alpha-hemolysin translo 93.0 0.047 1.6E-06 48.5 2.9 24 102-125 35-58 (247)
282 1u0j_A DNA replication protein 93.0 0.09 3.1E-06 47.1 4.6 37 85-125 91-127 (267)
283 1sgw_A Putative ABC transporte 93.0 0.041 1.4E-06 47.8 2.3 24 102-125 35-58 (214)
284 2dr3_A UPF0273 protein PH0284; 93.0 0.048 1.6E-06 47.9 2.8 24 101-124 22-45 (247)
285 2lkc_A Translation initiation 93.0 0.064 2.2E-06 44.3 3.5 26 100-125 6-31 (178)
286 2yz2_A Putative ABC transporte 93.0 0.051 1.7E-06 48.9 3.0 24 102-125 33-56 (266)
287 1svi_A GTP-binding protein YSX 92.9 0.072 2.5E-06 44.8 3.7 26 101-126 22-47 (195)
288 3q72_A GTP-binding protein RAD 92.9 0.054 1.8E-06 44.1 2.9 22 104-125 4-25 (166)
289 2aka_B Dynamin-1; fusion prote 92.8 0.15 5E-06 46.3 6.0 42 84-125 8-49 (299)
290 1fzq_A ADP-ribosylation factor 92.8 0.074 2.5E-06 44.4 3.6 26 100-125 14-39 (181)
291 3con_A GTPase NRAS; structural 92.8 0.052 1.8E-06 45.5 2.7 23 103-125 22-44 (190)
292 3eph_A TRNA isopentenyltransfe 92.8 0.064 2.2E-06 51.0 3.5 24 102-125 2-25 (409)
293 2qi9_C Vitamin B12 import ATP- 92.8 0.055 1.9E-06 48.2 2.9 25 102-126 26-50 (249)
294 3vkw_A Replicase large subunit 92.7 0.25 8.6E-06 47.6 7.6 76 99-174 158-246 (446)
295 2nq2_C Hypothetical ABC transp 92.7 0.057 2E-06 48.2 3.0 24 102-125 31-54 (253)
296 3q85_A GTP-binding protein REM 92.7 0.062 2.1E-06 43.9 3.0 23 103-125 3-25 (169)
297 2erx_A GTP-binding protein DI- 92.7 0.065 2.2E-06 43.8 3.1 23 103-125 4-26 (172)
298 2ihy_A ABC transporter, ATP-bi 92.7 0.057 2E-06 48.9 2.9 24 102-125 47-70 (279)
299 2gj8_A MNME, tRNA modification 92.6 0.08 2.7E-06 43.8 3.6 23 103-125 5-27 (172)
300 3pqc_A Probable GTP-binding pr 92.6 0.085 2.9E-06 44.2 3.8 26 101-126 22-47 (195)
301 2cxx_A Probable GTP-binding pr 92.6 0.07 2.4E-06 44.5 3.3 22 104-125 3-24 (190)
302 1p5z_B DCK, deoxycytidine kina 92.6 0.041 1.4E-06 49.3 1.9 27 100-126 22-48 (263)
303 2fn4_A P23, RAS-related protei 92.6 0.086 2.9E-06 43.5 3.7 26 100-125 7-32 (181)
304 1u8z_A RAS-related protein RAL 92.6 0.088 3E-06 42.7 3.7 24 102-125 4-27 (168)
305 1z08_A RAS-related protein RAB 92.5 0.063 2.1E-06 43.9 2.8 24 102-125 6-29 (170)
306 1c1y_A RAS-related protein RAP 92.5 0.062 2.1E-06 43.7 2.7 22 104-125 5-26 (167)
307 3sop_A Neuronal-specific septi 92.5 0.069 2.4E-06 48.1 3.3 23 104-126 4-26 (270)
308 1f6b_A SAR1; gtpases, N-termin 92.5 0.093 3.2E-06 44.6 3.9 24 102-125 25-48 (198)
309 1nrj_B SR-beta, signal recogni 92.5 0.07 2.4E-06 45.9 3.2 27 100-126 10-36 (218)
310 1nij_A Hypothetical protein YJ 92.5 0.069 2.4E-06 49.4 3.3 25 101-125 3-27 (318)
311 2hxs_A RAB-26, RAS-related pro 92.5 0.098 3.4E-06 43.1 4.0 25 101-125 5-29 (178)
312 3ch4_B Pmkase, phosphomevalona 92.5 0.092 3.1E-06 44.9 3.7 26 99-124 8-33 (202)
313 1pzn_A RAD51, DNA repair and r 92.4 0.067 2.3E-06 50.2 3.2 25 100-124 129-153 (349)
314 1z0j_A RAB-22, RAS-related pro 92.4 0.067 2.3E-06 43.6 2.9 24 102-125 6-29 (170)
315 2p67_A LAO/AO transport system 92.4 0.13 4.3E-06 48.1 5.1 24 100-123 54-77 (341)
316 1kao_A RAP2A; GTP-binding prot 92.4 0.065 2.2E-06 43.5 2.7 23 103-125 4-26 (167)
317 3nh6_A ATP-binding cassette SU 92.4 0.056 1.9E-06 49.7 2.5 26 101-126 79-104 (306)
318 3qf4_A ABC transporter, ATP-bi 92.4 0.075 2.6E-06 53.6 3.7 26 101-126 368-393 (587)
319 1ek0_A Protein (GTP-binding pr 92.4 0.065 2.2E-06 43.7 2.7 22 104-125 5-26 (170)
320 3kta_A Chromosome segregation 92.3 0.08 2.7E-06 44.2 3.2 20 104-123 28-47 (182)
321 3f9v_A Minichromosome maintena 92.3 0.043 1.5E-06 55.4 1.8 52 75-126 295-351 (595)
322 1m7b_A RND3/RHOE small GTP-bin 92.3 0.087 3E-06 44.0 3.5 25 101-125 6-30 (184)
323 2yv5_A YJEQ protein; hydrolase 92.3 0.11 3.8E-06 47.6 4.5 32 83-123 155-186 (302)
324 3tw8_B RAS-related protein RAB 92.3 0.068 2.3E-06 44.1 2.7 27 100-126 7-33 (181)
325 1ky3_A GTP-binding protein YPT 92.3 0.089 3E-06 43.4 3.5 26 100-125 6-31 (182)
326 3ihw_A Centg3; RAS, centaurin, 92.3 0.068 2.3E-06 44.8 2.7 24 102-125 20-43 (184)
327 3t1o_A Gliding protein MGLA; G 92.3 0.071 2.4E-06 44.8 2.9 24 102-125 14-37 (198)
328 4bas_A ADP-ribosylation factor 92.3 0.089 3.1E-06 44.3 3.5 28 99-126 14-41 (199)
329 2bbs_A Cystic fibrosis transme 92.2 0.076 2.6E-06 48.4 3.1 26 101-126 63-88 (290)
330 1zj6_A ADP-ribosylation factor 92.2 0.19 6.4E-06 41.9 5.5 24 102-125 16-39 (187)
331 3llu_A RAS-related GTP-binding 92.2 0.086 2.9E-06 44.6 3.3 25 102-126 20-44 (196)
332 2qm8_A GTPase/ATPase; G protei 92.2 0.14 4.7E-06 47.8 4.9 25 100-124 53-77 (337)
333 2axn_A 6-phosphofructo-2-kinas 92.2 0.079 2.7E-06 52.6 3.4 26 101-126 34-59 (520)
334 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.075 2.6E-06 43.8 2.9 25 101-125 6-30 (177)
335 1moz_A ARL1, ADP-ribosylation 92.1 0.1 3.6E-06 43.2 3.7 25 101-125 17-41 (183)
336 3c5c_A RAS-like protein 12; GD 92.1 0.076 2.6E-06 44.6 2.9 24 102-125 21-44 (187)
337 2pjz_A Hypothetical protein ST 92.1 0.075 2.6E-06 47.7 2.9 23 102-124 30-52 (263)
338 1pui_A ENGB, probable GTP-bind 92.1 0.057 2E-06 46.1 2.1 26 101-126 25-50 (210)
339 4f4c_A Multidrug resistance pr 92.1 0.066 2.3E-06 59.3 3.0 27 101-127 443-469 (1321)
340 1m2o_B GTP-binding protein SAR 92.0 0.079 2.7E-06 44.7 2.9 23 103-125 24-46 (190)
341 2iwr_A Centaurin gamma 1; ANK 92.0 0.064 2.2E-06 44.4 2.3 24 102-125 7-30 (178)
342 1r8s_A ADP-ribosylation factor 92.0 0.074 2.5E-06 43.2 2.6 20 105-124 3-22 (164)
343 1r2q_A RAS-related protein RAB 92.0 0.08 2.7E-06 43.1 2.8 24 102-125 6-29 (170)
344 2qu8_A Putative nucleolar GTP- 92.0 0.11 3.6E-06 45.3 3.7 26 100-125 27-52 (228)
345 4dsu_A GTPase KRAS, isoform 2B 92.0 0.081 2.8E-06 44.0 2.9 23 103-125 5-27 (189)
346 2bme_A RAB4A, RAS-related prot 92.0 0.085 2.9E-06 43.9 3.0 25 101-125 9-33 (186)
347 1g16_A RAS-related protein SEC 92.0 0.11 3.6E-06 42.4 3.5 24 102-125 3-26 (170)
348 2www_A Methylmalonic aciduria 92.0 0.095 3.2E-06 49.1 3.6 25 100-124 72-96 (349)
349 2y8e_A RAB-protein 6, GH09086P 91.8 0.091 3.1E-06 43.2 3.0 23 103-125 15-37 (179)
350 1g8f_A Sulfate adenylyltransfe 91.8 0.1 3.5E-06 51.4 3.7 25 101-125 394-418 (511)
351 2r8r_A Sensor protein; KDPD, P 91.8 0.084 2.9E-06 46.0 2.7 22 103-124 7-28 (228)
352 3t5g_A GTP-binding protein RHE 91.8 0.092 3.2E-06 43.5 3.0 24 102-125 6-29 (181)
353 3fvq_A Fe(3+) IONS import ATP- 91.8 0.095 3.2E-06 49.2 3.3 24 102-125 30-53 (359)
354 1j8m_F SRP54, signal recogniti 91.8 0.073 2.5E-06 48.7 2.5 23 102-124 98-120 (297)
355 1z0f_A RAB14, member RAS oncog 91.7 0.11 3.6E-06 42.8 3.3 25 101-125 14-38 (179)
356 3kkq_A RAS-related protein M-R 91.7 0.13 4.3E-06 42.7 3.8 26 100-125 16-41 (183)
357 2efe_B Small GTP-binding prote 91.7 0.09 3.1E-06 43.5 2.8 24 102-125 12-35 (181)
358 2h92_A Cytidylate kinase; ross 91.7 0.074 2.5E-06 46.0 2.3 24 103-126 4-27 (219)
359 2cjw_A GTP-binding protein GEM 91.7 0.09 3.1E-06 44.4 2.8 23 102-124 6-28 (192)
360 1upt_A ARL1, ADP-ribosylation 91.7 0.12 4.1E-06 42.2 3.5 24 102-125 7-30 (171)
361 2zts_A Putative uncharacterize 91.6 0.084 2.9E-06 46.4 2.7 23 101-123 29-51 (251)
362 2a9k_A RAS-related protein RAL 91.6 0.092 3.1E-06 43.6 2.8 24 102-125 18-41 (187)
363 2h17_A ADP-ribosylation factor 91.6 0.11 3.8E-06 43.2 3.3 24 102-125 21-44 (181)
364 3bwd_D RAC-like GTP-binding pr 91.6 0.09 3.1E-06 43.5 2.7 24 102-125 8-31 (182)
365 2fg5_A RAB-22B, RAS-related pr 91.6 0.1 3.5E-06 43.9 3.1 24 102-125 23-46 (192)
366 2atv_A RERG, RAS-like estrogen 91.6 0.091 3.1E-06 44.3 2.7 24 102-125 28-51 (196)
367 1zbd_A Rabphilin-3A; G protein 91.5 0.1 3.4E-06 44.3 3.0 24 102-125 8-31 (203)
368 2oil_A CATX-8, RAS-related pro 91.5 0.092 3.2E-06 44.1 2.8 24 102-125 25-48 (193)
369 2zr9_A Protein RECA, recombina 91.5 0.083 2.8E-06 49.5 2.7 73 100-172 59-149 (349)
370 1gwn_A RHO-related GTP-binding 91.5 0.095 3.3E-06 44.9 2.9 24 102-125 28-51 (205)
371 2bov_A RAla, RAS-related prote 91.5 0.13 4.5E-06 43.5 3.7 25 101-125 13-37 (206)
372 3def_A T7I23.11 protein; chlor 91.5 0.23 7.8E-06 44.3 5.5 38 84-125 22-59 (262)
373 1lw7_A Transcriptional regulat 91.5 0.099 3.4E-06 49.3 3.2 24 102-125 170-193 (365)
374 2ck3_D ATP synthase subunit be 91.5 0.49 1.7E-05 45.9 8.0 35 86-125 142-176 (482)
375 1vg8_A RAS-related protein RAB 91.5 0.12 4.2E-06 43.8 3.5 26 100-125 6-31 (207)
376 3oes_A GTPase rhebl1; small GT 91.5 0.1 3.5E-06 44.3 3.0 24 102-125 24-47 (201)
377 3bc1_A RAS-related protein RAB 91.4 0.12 4.1E-06 43.1 3.4 25 101-125 10-34 (195)
378 2qnr_A Septin-2, protein NEDD5 91.4 0.1 3.5E-06 47.8 3.1 22 104-125 20-41 (301)
379 2ew1_A RAS-related protein RAB 91.4 0.1 3.4E-06 44.6 2.9 24 102-125 26-49 (201)
380 4gzl_A RAS-related C3 botulinu 91.4 0.12 4E-06 44.1 3.3 24 102-125 30-53 (204)
381 2g6b_A RAS-related protein RAB 91.4 0.1 3.4E-06 43.1 2.8 25 101-125 9-33 (180)
382 3cbq_A GTP-binding protein REM 91.4 0.098 3.4E-06 44.3 2.8 24 101-124 22-45 (195)
383 3kjh_A CO dehydrogenase/acetyl 91.4 0.076 2.6E-06 46.7 2.1 19 105-123 3-21 (254)
384 1u0l_A Probable GTPase ENGC; p 91.4 0.15 5.3E-06 46.6 4.2 35 83-126 159-193 (301)
385 2orw_A Thymidine kinase; TMTK, 91.4 0.1 3.5E-06 44.0 2.8 22 103-124 4-25 (184)
386 2ffh_A Protein (FFH); SRP54, s 91.4 0.11 3.9E-06 49.9 3.4 24 101-124 97-120 (425)
387 3lxx_A GTPase IMAP family memb 91.4 0.14 4.6E-06 45.0 3.7 27 100-126 27-53 (239)
388 2o52_A RAS-related protein RAB 91.4 0.11 3.7E-06 44.1 3.0 24 102-125 25-48 (200)
389 4f4c_A Multidrug resistance pr 91.3 0.1 3.5E-06 57.7 3.5 26 102-127 1105-1130(1321)
390 4dzz_A Plasmid partitioning pr 91.3 0.11 3.6E-06 44.3 2.9 22 103-124 2-24 (206)
391 1bif_A 6-phosphofructo-2-kinas 91.3 0.11 3.7E-06 50.9 3.3 24 102-125 39-62 (469)
392 1h65_A Chloroplast outer envel 91.3 0.24 8.2E-06 44.4 5.4 26 101-126 38-63 (270)
393 1m8p_A Sulfate adenylyltransfe 91.3 0.2 6.8E-06 50.2 5.3 26 100-125 394-419 (573)
394 3tqf_A HPR(Ser) kinase; transf 91.3 0.14 4.7E-06 42.6 3.4 24 102-125 16-39 (181)
395 2q3h_A RAS homolog gene family 91.3 0.11 3.6E-06 44.0 2.9 25 102-126 20-44 (201)
396 3k53_A Ferrous iron transport 91.3 0.15 5.1E-06 45.8 4.0 24 102-125 3-26 (271)
397 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.12 4.3E-06 42.7 3.3 24 102-125 5-28 (186)
398 3ld9_A DTMP kinase, thymidylat 91.3 0.13 4.4E-06 44.9 3.4 27 100-126 19-45 (223)
399 3iev_A GTP-binding protein ERA 91.3 0.12 4.1E-06 47.5 3.4 27 99-125 7-33 (308)
400 3fkq_A NTRC-like two-domain pr 91.2 0.14 4.6E-06 48.5 3.8 25 99-123 140-165 (373)
401 2j1l_A RHO-related GTP-binding 91.2 0.12 4E-06 44.5 3.1 24 102-125 34-57 (214)
402 3reg_A RHO-like small GTPase; 91.2 0.1 3.5E-06 43.9 2.7 24 102-125 23-46 (194)
403 1ksh_A ARF-like protein 2; sma 91.2 0.14 5E-06 42.5 3.6 25 101-125 17-41 (186)
404 3dz8_A RAS-related protein RAB 91.2 0.11 3.7E-06 43.7 2.8 23 102-124 23-45 (191)
405 3ea0_A ATPase, para family; al 91.2 0.14 4.7E-06 44.9 3.6 23 101-123 3-26 (245)
406 2b6h_A ADP-ribosylation factor 91.2 0.15 5.2E-06 42.9 3.7 24 102-125 29-52 (192)
407 1zd9_A ADP-ribosylation factor 91.1 0.11 3.6E-06 43.7 2.7 24 102-125 22-45 (188)
408 3cph_A RAS-related protein SEC 91.1 0.13 4.3E-06 43.9 3.2 24 102-125 20-43 (213)
409 2gf9_A RAS-related protein RAB 91.1 0.11 3.6E-06 43.6 2.7 24 102-125 22-45 (189)
410 2yyz_A Sugar ABC transporter, 91.1 0.12 4E-06 48.7 3.1 24 102-125 29-52 (359)
411 1z47_A CYSA, putative ABC-tran 91.1 0.11 3.8E-06 48.7 3.0 24 102-125 41-64 (355)
412 3fdi_A Uncharacterized protein 91.1 0.12 4.1E-06 44.3 3.0 27 102-128 6-32 (201)
413 3tkl_A RAS-related protein RAB 91.1 0.11 3.8E-06 43.6 2.8 25 101-125 15-39 (196)
414 1tq4_A IIGP1, interferon-induc 91.1 0.11 3.9E-06 49.7 3.2 24 102-125 69-92 (413)
415 2it1_A 362AA long hypothetical 91.1 0.12 4E-06 48.7 3.2 24 102-125 29-52 (362)
416 2ewv_A Twitching motility prot 91.1 0.12 4.2E-06 48.8 3.3 102 101-207 135-249 (372)
417 2gf0_A GTP-binding protein DI- 91.1 0.16 5.4E-06 42.7 3.7 25 101-125 7-31 (199)
418 3rlf_A Maltose/maltodextrin im 91.1 0.12 4.1E-06 48.9 3.2 25 102-126 29-53 (381)
419 3clv_A RAB5 protein, putative; 91.1 0.16 5.4E-06 42.7 3.8 24 102-125 7-30 (208)
420 3bh0_A DNAB-like replicative h 91.0 0.12 4.2E-06 47.6 3.2 25 100-124 66-90 (315)
421 4dkx_A RAS-related protein RAB 91.0 0.11 3.7E-06 45.1 2.7 22 104-125 15-36 (216)
422 2fh5_B SR-beta, signal recogni 91.0 0.11 3.8E-06 44.5 2.7 24 102-125 7-30 (214)
423 2a5j_A RAS-related protein RAB 91.0 0.11 3.7E-06 43.6 2.6 24 102-125 21-44 (191)
424 2bcg_Y Protein YP2, GTP-bindin 91.0 0.12 4.1E-06 43.9 2.9 25 101-125 7-31 (206)
425 2il1_A RAB12; G-protein, GDP, 91.0 0.11 3.6E-06 43.8 2.5 24 102-125 26-49 (192)
426 1p9r_A General secretion pathw 90.9 0.22 7.5E-06 47.8 5.0 23 102-124 167-189 (418)
427 3cr8_A Sulfate adenylyltranfer 90.9 0.099 3.4E-06 52.1 2.6 25 101-125 368-392 (552)
428 3upu_A ATP-dependent DNA helic 90.9 0.1 3.4E-06 50.9 2.7 22 104-125 47-68 (459)
429 1ega_A Protein (GTP-binding pr 90.9 0.14 4.9E-06 46.8 3.5 24 102-125 8-31 (301)
430 1x3s_A RAS-related protein RAB 90.9 0.12 4.1E-06 43.3 2.8 24 102-125 15-38 (195)
431 1v43_A Sugar-binding transport 90.9 0.13 4.3E-06 48.6 3.2 24 102-125 37-60 (372)
432 2g3y_A GTP-binding protein GEM 90.9 0.18 6.2E-06 43.5 4.0 24 101-124 36-59 (211)
433 2atx_A Small GTP binding prote 90.8 0.13 4.3E-06 43.3 2.9 24 102-125 18-41 (194)
434 1v5w_A DMC1, meiotic recombina 90.8 0.15 5E-06 47.7 3.5 25 100-124 120-144 (343)
435 2fv8_A H6, RHO-related GTP-bin 90.8 0.13 4.5E-06 43.8 3.0 24 102-125 25-48 (207)
436 1jwy_B Dynamin A GTPase domain 90.8 0.29 9.8E-06 44.8 5.5 42 84-126 7-48 (315)
437 1u94_A RECA protein, recombina 90.8 0.1 3.6E-06 49.0 2.5 72 101-172 62-151 (356)
438 4edh_A DTMP kinase, thymidylat 90.7 0.15 5E-06 44.2 3.2 24 102-125 6-29 (213)
439 3lda_A DNA repair protein RAD5 90.7 0.13 4.5E-06 49.1 3.2 24 100-123 176-199 (400)
440 3io3_A DEHA2D07832P; chaperone 90.7 0.14 4.6E-06 48.0 3.2 24 100-123 16-39 (348)
441 3d31_A Sulfate/molybdate ABC t 90.7 0.11 3.6E-06 48.7 2.4 24 102-125 26-49 (348)
442 2hup_A RAS-related protein RAB 90.7 0.14 4.7E-06 43.6 3.0 25 102-126 29-53 (201)
443 2j0v_A RAC-like GTP-binding pr 90.7 0.13 4.4E-06 44.0 2.9 25 101-125 8-32 (212)
444 1z06_A RAS-related protein RAB 90.7 0.17 5.7E-06 42.4 3.5 24 102-125 20-43 (189)
445 1g29_1 MALK, maltose transport 90.6 0.13 4.4E-06 48.6 3.0 23 102-124 29-51 (372)
446 2p5s_A RAS and EF-hand domain 90.6 0.15 5.1E-06 43.1 3.2 25 101-125 27-51 (199)
447 2gza_A Type IV secretion syste 90.6 0.13 4.5E-06 48.4 3.0 25 102-126 175-199 (361)
448 2gco_A H9, RHO-related GTP-bin 90.5 0.14 4.9E-06 43.4 3.0 24 102-125 25-48 (201)
449 2xtp_A GTPase IMAP family memb 90.5 0.19 6.3E-06 44.7 3.8 25 101-125 21-45 (260)
450 2h57_A ADP-ribosylation factor 90.5 0.11 3.6E-06 43.6 2.1 24 102-125 21-44 (190)
451 1mky_A Probable GTP-binding pr 90.5 0.32 1.1E-05 47.1 5.7 48 79-126 152-204 (439)
452 1ypw_A Transitional endoplasmi 90.4 0.14 4.7E-06 53.7 3.3 154 74-232 476-661 (806)
453 3gd7_A Fusion complex of cysti 90.4 0.15 5.2E-06 48.4 3.3 24 102-125 47-70 (390)
454 2i1q_A DNA repair and recombin 90.4 0.15 5.1E-06 47.1 3.2 25 100-124 96-120 (322)
455 1x6v_B Bifunctional 3'-phospho 90.3 0.16 5.6E-06 51.2 3.6 25 101-125 51-75 (630)
456 2f7s_A C25KG, RAS-related prot 90.3 0.15 5.2E-06 43.7 3.0 24 102-125 25-48 (217)
457 2obl_A ESCN; ATPase, hydrolase 90.3 0.15 5E-06 47.8 3.0 27 101-127 70-96 (347)
458 1oxx_K GLCV, glucose, ABC tran 90.3 0.098 3.3E-06 49.1 1.8 23 102-124 31-53 (353)
459 2fu5_C RAS-related protein RAB 90.3 0.086 2.9E-06 43.8 1.3 25 101-125 7-31 (183)
460 4dhe_A Probable GTP-binding pr 90.3 0.12 4E-06 44.6 2.2 26 101-126 28-53 (223)
461 2z43_A DNA repair and recombin 90.2 0.13 4.5E-06 47.6 2.7 25 100-124 105-129 (324)
462 3lv8_A DTMP kinase, thymidylat 90.1 0.16 5.4E-06 44.7 3.0 24 102-125 27-50 (236)
463 3q3j_B RHO-related GTP-binding 90.1 0.14 4.9E-06 44.0 2.7 24 102-125 27-50 (214)
464 3bfv_A CAPA1, CAPB2, membrane 90.0 0.31 1.1E-05 43.8 4.8 40 82-123 64-104 (271)
465 3cwq_A Para family chromosome 90.0 0.16 5.4E-06 43.7 2.8 20 104-123 2-22 (209)
466 2rcn_A Probable GTPase ENGC; Y 89.9 0.17 5.7E-06 47.5 3.1 24 103-126 216-239 (358)
467 3hdt_A Putative kinase; struct 89.9 0.21 7.3E-06 43.5 3.6 25 102-126 14-38 (223)
468 3g5u_A MCG1178, multidrug resi 89.9 0.092 3.1E-06 58.0 1.4 26 101-126 415-440 (1284)
469 2x77_A ADP-ribosylation factor 89.8 0.2 6.8E-06 41.8 3.3 25 101-125 21-45 (189)
470 3iqw_A Tail-anchored protein t 89.8 0.18 6.3E-06 46.8 3.3 24 100-123 14-37 (334)
471 3v9p_A DTMP kinase, thymidylat 89.7 0.13 4.5E-06 45.0 2.0 25 102-126 25-49 (227)
472 2j9r_A Thymidine kinase; TK1, 89.7 0.19 6.6E-06 43.3 3.0 94 101-201 27-137 (214)
473 1c9k_A COBU, adenosylcobinamid 89.7 0.18 6.3E-06 42.3 2.8 21 105-125 2-22 (180)
474 2gks_A Bifunctional SAT/APS ki 89.5 0.25 8.4E-06 49.3 4.1 25 101-125 371-395 (546)
475 3tmk_A Thymidylate kinase; pho 89.5 0.21 7.3E-06 43.3 3.2 25 102-126 5-29 (216)
476 2oze_A ORF delta'; para, walke 89.4 0.19 6.4E-06 45.7 3.0 22 102-123 34-58 (298)
477 2pt7_A CAG-ALFA; ATPase, prote 89.4 0.15 5E-06 47.4 2.3 24 103-126 172-195 (330)
478 2qag_B Septin-6, protein NEDD5 89.3 0.17 5.6E-06 48.7 2.6 21 105-125 45-65 (427)
479 3b1v_A Ferrous iron uptake tra 89.3 0.24 8.2E-06 44.6 3.6 24 102-125 3-26 (272)
480 2r6a_A DNAB helicase, replicat 89.3 0.2 6.8E-06 48.7 3.2 25 101-125 202-226 (454)
481 1wf3_A GTP-binding protein; GT 89.2 0.23 7.8E-06 45.4 3.4 24 102-125 7-30 (301)
482 2fz4_A DNA repair protein RAD2 89.2 1.1 3.7E-05 39.2 7.7 91 105-199 111-226 (237)
483 3lxw_A GTPase IMAP family memb 89.2 0.2 6.9E-06 44.3 2.9 25 102-126 21-45 (247)
484 3cpj_B GTP-binding protein YPT 89.2 0.19 6.5E-06 43.4 2.7 24 102-125 13-36 (223)
485 3ug7_A Arsenical pump-driving 89.2 0.26 8.7E-06 46.2 3.8 24 100-123 24-47 (349)
486 2qag_C Septin-7; cell cycle, c 89.2 0.2 6.7E-06 48.1 3.0 22 105-126 34-55 (418)
487 1byi_A Dethiobiotin synthase; 89.1 0.25 8.5E-06 42.7 3.4 21 103-123 2-23 (224)
488 3ez2_A Plasmid partition prote 89.1 0.23 8E-06 47.3 3.5 25 99-123 105-130 (398)
489 3iby_A Ferrous iron transport 89.1 0.23 7.7E-06 44.3 3.2 23 103-125 2-24 (256)
490 1f2t_A RAD50 ABC-ATPase; DNA d 89.0 0.27 9.1E-06 39.8 3.3 22 102-123 23-44 (149)
491 1fx0_B ATP synthase beta chain 89.0 0.64 2.2E-05 45.2 6.5 35 86-125 154-188 (498)
492 2qtf_A Protein HFLX, GTP-bindi 89.0 0.22 7.5E-06 46.9 3.2 26 101-126 178-203 (364)
493 1dek_A Deoxynucleoside monopho 89.0 0.24 8.1E-06 43.7 3.2 22 103-124 2-23 (241)
494 4tmk_A Protein (thymidylate ki 88.9 0.23 7.9E-06 42.9 3.0 23 103-125 4-26 (213)
495 3cio_A ETK, tyrosine-protein k 88.8 0.34 1.2E-05 44.2 4.3 24 100-123 102-126 (299)
496 3a1s_A Iron(II) transport prot 88.8 0.26 8.9E-06 43.9 3.4 24 102-125 5-28 (258)
497 3t5d_A Septin-7; GTP-binding p 88.8 0.21 7.3E-06 44.8 2.9 24 103-126 9-32 (274)
498 3cmu_A Protein RECA, recombina 88.8 0.41 1.4E-05 54.5 5.6 72 100-171 1425-1514(2050)
499 2dpy_A FLII, flagellum-specifi 88.7 0.21 7.1E-06 48.3 2.9 26 101-126 156-181 (438)
500 2npi_A Protein CLP1; CLP1-PCF1 88.7 0.19 6.5E-06 48.9 2.6 25 102-126 138-162 (460)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-45 Score=373.33 Aligned_cols=279 Identities=20% Similarity=0.297 Sum_probs=219.2
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc--CCh---------------------HHHHHHH
Q 038234 78 CGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN--DKD---------------------FRVAKAI 134 (406)
Q Consensus 78 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~---------------------~~~~~~i 134 (406)
|||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.. ..++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 34589999999999999999999996 111 1567788
Q ss_pred HHHhcCCCC-------CCCCHHHHHHHHHhhccCc-ceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHH
Q 038234 135 IAALGCETS-------NLGSLQSLVRCISESIEGK-KYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVAR 206 (406)
Q Consensus 135 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~ 206 (406)
+.+++.... ...+.+.+...+++.|.++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 888875421 1234567788999999996 9999999999854222221 16999999999999998
Q ss_pred Hhc-cCCccccCCCChHHHHHhhhhhc---------------cccch---hHHHHHHhhhhcchhhHHhhhhhccchhhh
Q 038234 207 MME-STNFISIKELSTQECWSLFKQES---------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDSELWQ 267 (406)
Q Consensus 207 ~~~-~~~~~~l~~L~~~~a~~Lf~~~~---------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~~~~~ 267 (406)
.++ ...+|+|++|+.++||+||.+.+ |+++| |||++++|+.|+.+. ..|...+....+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNKLES 357 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHHhhc
Confidence 876 34679999999999999998875 66677 999999999997762 2333333332222
Q ss_pred hhhhhhhHHHHHHhccccCChhhhhHHh-----------hhcccCCCCccCHHHHHHHHHHC--CCccccc-CCCHHHHH
Q 038234 268 LQELEKDLFSLLLLNYYDLPYRIKQCFR-----------YCFISPKDSCIWKEDLIKLWIAQ--SFIEAKE-NKEMEIID 333 (406)
Q Consensus 268 ~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~la~Fp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~e~~~ 333 (406)
. ...++..+|.+||++||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.... +.+.++.+
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 1 3457889999999999999999999 999999999998 8999999 9998765 66788888
Q ss_pred HHHHHHHHhcCCcceeecCCCCcccEEEECHHHHHHHHHhhhcCeE
Q 038234 334 EEYFDYLTARSFFQEFHKGSDDIITECKMHDIVHDFAQFLRKNQCL 379 (406)
Q Consensus 334 ~~~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e~~ 379 (406)
+ ||++|+++||+++...+ ...+|+|||+||+||++++.++++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7 99999999999987653 345799999999999999888765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-37 Score=344.80 Aligned_cols=277 Identities=19% Similarity=0.148 Sum_probs=220.0
Q ss_pred cCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------------------
Q 038234 72 IDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------------------- 128 (406)
Q Consensus 72 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------------------- 128 (406)
..++.||||++++++|.++|... ++..++|+|+||||+||||||+++|++...
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 44567999999999999999754 356899999999999999999999987422
Q ss_pred HHHHHHHHHhcCCC----CCCCCHHHHHHHHHhhccCc--ceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 129 RVAKAIIAALGCET----SNLGSLQSLVRCISESIEGK--KYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 129 ~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
..+..++..+.... ....+.+.+...++..+.++ ||||||||||+.. .|.. .++||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEcCCH
Confidence 23455666665433 22456788889999999877 9999999998642 2332 35689999999999
Q ss_pred HHHHH-hccCCccccCC-CChHHHHHhhhhhc-------------cccch---hHHHHHHhhhhcchhhHHhhhhhccch
Q 038234 203 TVARM-MESTNFISIKE-LSTQECWSLFKQES-------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDSE 264 (406)
Q Consensus 203 ~v~~~-~~~~~~~~l~~-L~~~~a~~Lf~~~~-------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~~ 264 (406)
.++.. ++....+.+.+ |+.++|++||...+ |+++| |||++++|++|+.+. ..|...+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 99854 45577889996 99999999998755 67777 999999999998765 3455444332
Q ss_pred hhh--------hhhhhhhHHHHHHhccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHH
Q 038234 265 LWQ--------LQELEKDLFSLLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEY 336 (406)
Q Consensus 265 ~~~--------~~~~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~ 336 (406)
... ......++.++|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 111 111235799999999999999999999999999999999999999999654 3578899
Q ss_pred HHHHHhcCCcceeecCCCCcccEEEECHHHHHHHHHhhhcC
Q 038234 337 FDYLTARSFFQEFHKGSDDIITECKMHDIVHDFAQFLRKNQ 377 (406)
Q Consensus 337 l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~~~~~e 377 (406)
|++|+++|||+.... +...+|+||++||+|+++.+.+|
T Consensus 415 l~~L~~~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 999999999986543 34457999999999999998776
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.2e-37 Score=318.10 Aligned_cols=256 Identities=17% Similarity=0.093 Sum_probs=198.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------------HHHHHHH
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------------RVAKAII 135 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~~~i~ 135 (406)
..|||+.++++|.++|... +..++|+|+||||+||||||+++|++.+. .++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3499999999999999853 23789999999999999999999975421 3344444
Q ss_pred HH---hcCCCC---C-----CCCHHHHHHHHHhhc---cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC
Q 038234 136 AA---LGCETS---N-----LGSLQSLVRCISESI---EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK 201 (406)
Q Consensus 136 ~~---l~~~~~---~-----~~~~~~~~~~l~~~l---~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 201 (406)
.. +..... . ..+.+.+...+++.| .+||+||||||+|+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 33 221111 0 113445566677755 689999999999873 345443 2 58999999999
Q ss_pred hHHHHHhccCCccccC------CCChHHHHHhhhhhc----------cccchhHHHHHHhhhhcchh-hHHhhhhhccch
Q 038234 202 KTVARMMESTNFISIK------ELSTQECWSLFKQES----------SAKPCLLLQKLLGVSCALKE-LEMSGKNSLDSE 264 (406)
Q Consensus 202 ~~v~~~~~~~~~~~l~------~L~~~~a~~Lf~~~~----------i~~~cPLai~~~g~~L~~~~-~~~~w~~~~~~~ 264 (406)
+.++..+.....+.++ +|+.+||++||.+.. +..+.|||++++|+.|+.+. ..+.|...
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 9998765555567777 999999999998764 22233999999999998874 46778653
Q ss_pred hhhhhhhhhhHHHHHHhccccCChhh-hhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHHHhc
Q 038234 265 LWQLQELEKDLFSLLLLNYYDLPYRI-KQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYLTAR 343 (406)
Q Consensus 265 ~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~~ 343 (406)
....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.++.+|++|+++
T Consensus 351 ------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdR 414 (1221)
T 1vt4_I 351 ------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKY 414 (1221)
T ss_dssp ------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTS
T ss_pred ------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhh
Confidence 23679999999999999999 99999999999999999999999998887 13578899999999
Q ss_pred CCcceeecCCCCcccEEEECHHHHHHH
Q 038234 344 SFFQEFHKGSDDIITECKMHDIVHDFA 370 (406)
Q Consensus 344 sll~~~~~~~~~~~~~~~mHdlv~~~~ 370 (406)
||++.. +....|+|||++++++
T Consensus 415 SLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 415 SLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred CCEEEe-----CCCCEEEehHHHHHHh
Confidence 999873 1224799999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=288.07 Aligned_cols=273 Identities=18% Similarity=0.134 Sum_probs=204.5
Q ss_pred cCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------------HHH
Q 038234 72 IDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--------------------RVA 131 (406)
Q Consensus 72 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~ 131 (406)
..++.||||+.++++|.++|... .+..++|+|+||||+||||||.+++++... .+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHH
Confidence 34567999999999999999753 245789999999999999999999876421 122
Q ss_pred HH---HHHHhcCC----CCCCCCHHHHHHHHHhhccC--cceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 132 KA---IIAALGCE----TSNLGSLQSLVRCISESIEG--KKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 132 ~~---i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
.. +...++.. .....+.+.+...+...+.+ +++||||||+|+.. .+. . .++|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l~-~---l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VLK-A---FDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HHH-T---TCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HHH-H---hcCCCeEEEECCCc
Confidence 22 23344321 12345667778888888776 79999999997632 221 2 25689999999999
Q ss_pred HHHHHhccCCcccc---CCCChHHHHHhhhhhc-------------cccch---hHHHHHHhhhhcchhhHHhhhhhccc
Q 038234 203 TVARMMESTNFISI---KELSTQECWSLFKQES-------------SAKPC---LLLQKLLGVSCALKELEMSGKNSLDS 263 (406)
Q Consensus 203 ~v~~~~~~~~~~~l---~~L~~~~a~~Lf~~~~-------------i~~~c---PLai~~~g~~L~~~~~~~~w~~~~~~ 263 (406)
.++..+. ...+++ ++|+.+++++||...+ |++.| |||++++|+.++.+. ..|...+..
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~ 344 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQ 344 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 8876543 233444 5899999999998754 55566 999999999998764 356554433
Q ss_pred hhhh--------hhhhhhhHHHHHHhccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHH
Q 038234 264 ELWQ--------LQELEKDLFSLLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEE 335 (406)
Q Consensus 264 ~~~~--------~~~~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~ 335 (406)
.... ......++..+|..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+..
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 2211 011235789999999999999999999999999999999999999999543 235678
Q ss_pred HHHHHHhcCCcceeecCCCCcccEEEECHHHHHHHHHhh
Q 038234 336 YFDYLTARSFFQEFHKGSDDIITECKMHDIVHDFAQFLR 374 (406)
Q Consensus 336 ~l~~L~~~sll~~~~~~~~~~~~~~~mHdlv~~~~~~~~ 374 (406)
++++|+++|||+.... +....|+||+++|+|+++..
T Consensus 414 ~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 9999999999986433 33357999999999999873
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.56 E-value=1.1e-13 Score=131.63 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=154.3
Q ss_pred cCCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh------------------HHHHHH
Q 038234 72 IDESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD------------------FRVAKA 133 (406)
Q Consensus 72 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------------------~~~~~~ 133 (406)
..+..|+||+.++++|.+++.. . +++.|+|++|+|||+|++++++... ..+...
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHH
Confidence 3446799999999999998863 1 5899999999999999999876421 122333
Q ss_pred HHHHhcC-----------------CCC-CCCCHHHHHHHHHhhccC-cceeEEeeCCCCcCc-------cCcchhhhccC
Q 038234 134 IIAALGC-----------------ETS-NLGSLQSLVRCISESIEG-KKYLVVLDDVWTDDY-------TKWEPFQRCSA 187 (406)
Q Consensus 134 i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-kr~LlVlDdvw~~~~-------~~~~~l~~~l~ 187 (406)
+...+.. ..+ ...+...+...+.+.... ++.+|||||++.-+. ..+..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 3333321 000 123456666666665543 389999999976432 11222322222
Q ss_pred CCCCCcEEEEecCChHHHHHh-----------cc-CCccccCCCChHHHHHhhhhhc--------------cccch---h
Q 038234 188 NGQCGNNILVTTHKKTVARMM-----------ES-TNFISIKELSTQECWSLFKQES--------------SAKPC---L 238 (406)
Q Consensus 188 ~~~~gs~IivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~--------------i~~~c---P 238 (406)
. .++..+|+|++........ +. ...+.+.+|+.+|+.+++.... +...+ |
T Consensus 161 ~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 161 S-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp H-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred h-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 2 2467899998876542211 11 2368999999999999987531 22223 8
Q ss_pred HHHHHHhhhhcchhhHHhhhhhccchhhhhhhhhhhHHHHHHhccccC---ChhhhhHHhhhcccCCCCccCHHHHHHHH
Q 038234 239 LLQKLLGVSCALKELEMSGKNSLDSELWQLQELEKDLFSLLLLNYYDL---PYRIKQCFRYCFISPKDSCIWKEDLIKLW 315 (406)
Q Consensus 239 Lai~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cfl~la~Fp~~~~i~~~~Li~~W 315 (406)
+++..++..+........+. ... ...+...+...+..+ ++..+..+..+|. .. .+...+....
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~~~~l~~~~ 305 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAM---KRT-------LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GY--NRWSLIRDYL 305 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHH---HHH-------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CSHHHHHHHH
T ss_pred HHHHHHHHHHhccccHhHHH---HHH-------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CCHHHHHHHH
Confidence 88887775432211111111 000 011111111112222 7888999999987 22 4555555443
Q ss_pred HHCCCcccccCCCHHHHHHHHHHHHHhcCCcceeecCCCCcccEEEE-CHHHHHHHH
Q 038234 316 IAQSFIEAKENKEMEIIDEEYFDYLTARSFFQEFHKGSDDIITECKM-HDIVHDFAQ 371 (406)
Q Consensus 316 ~aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~m-Hdlv~~~~~ 371 (406)
.+.. .+.+ ......+++.|++.+||.... ..|.+ |++++++.+
T Consensus 306 ~~~~-----~~~~-~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 306 AVKG-----TKIP-EPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHTT-----CCCC-HHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHHT
T ss_pred HHHh-----CCCC-HHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHHc
Confidence 2211 0112 235668899999999997641 14665 788888764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=2.8e-14 Score=139.08 Aligned_cols=272 Identities=13% Similarity=0.054 Sum_probs=149.9
Q ss_pred CCceecchhhHHHHHHHH-hcCCCCCCCCcEEEEE--eeeCCCcHHHHHHHHhcCCh-----------------------
Q 038234 74 ESEICGRDYKKNELLSKL-LSDSSDQQKPIKMISI--VGMGGIGKITLAQMAYNDKD----------------------- 127 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~----------------------- 127 (406)
+..++||+.+++++.++| .............+.| +|++|+|||+||+.+++...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4211100023456666 99999999999998876431
Q ss_pred HHHHHHHHHHhcCCCCC-CCCHHHHHHHHHhhcc--CcceeEEeeCCCCcCc------cCcchhhhccCCC---C--CCc
Q 038234 128 FRVAKAIIAALGCETSN-LGSLQSLVRCISESIE--GKKYLVVLDDVWTDDY------TKWEPFQRCSANG---Q--CGN 193 (406)
Q Consensus 128 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~------~~~~~l~~~l~~~---~--~gs 193 (406)
..+...++..++...+. ..+...+...+.+.+. +++++|||||+|.... ..+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 05667777777654332 2334556666666654 7799999999976421 2222222222211 2 345
Q ss_pred EEEEecCChHHHHHhc--------c-CCccccCCCChHHHHHhhhhhc---cc-cch-hHHHHHHhhhhc------chhh
Q 038234 194 NILVTTHKKTVARMME--------S-TNFISIKELSTQECWSLFKQES---SA-KPC-LLLQKLLGVSCA------LKEL 253 (406)
Q Consensus 194 ~IivTtR~~~v~~~~~--------~-~~~~~l~~L~~~~a~~Lf~~~~---i~-~~c-PLai~~~g~~L~------~~~~ 253 (406)
.||+||+...+...+. . ...+.+.+|+.++++++|.... .. ..+ |-++..+..... ..+.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 5787887655432221 1 2238999999999999997543 11 011 222222222222 1110
Q ss_pred -H-----Hhhhhhcc----ch-hhhhhhhhhhH--HHHHHhccccCChhhhhHHhhhcccC--CCCccCHHHHHHHHH--
Q 038234 254 -E-----MSGKNSLD----SE-LWQLQELEKDL--FSLLLLNYYDLPYRIKQCFRYCFISP--KDSCIWKEDLIKLWI-- 316 (406)
Q Consensus 254 -~-----~~w~~~~~----~~-~~~~~~~~~~~--~~~l~~sy~~L~~~~k~cfl~la~Fp--~~~~i~~~~Li~~W~-- 316 (406)
. ..+..... .. ........... ...+..++..||++.+.++..++.+. .+..++...+...+.
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~ 340 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDA 340 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 0 00000000 00 00000001111 34456678899999999999898764 333466655554442
Q ss_pred H---CCCcccccCCCHHHHHHHHHHHHHhcCCcceee
Q 038234 317 A---QSFIEAKENKEMEIIDEEYFDYLTARSFFQEFH 350 (406)
Q Consensus 317 a---eg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~ 350 (406)
+ .|. ...+ ......+++.|++.+||....
T Consensus 341 ~~~~~~~----~~~~-~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 341 SLTMYNV----KPRG-YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHSCC----CCCC-HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhhcCC----CCCC-HHHHHHHHHHHHhCCCEEeec
Confidence 2 121 1111 234567899999999997654
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=1.2e-12 Score=124.72 Aligned_cols=263 Identities=10% Similarity=0.044 Sum_probs=151.2
Q ss_pred CCCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh-------------------HHHHHH
Q 038234 73 DESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD-------------------FRVAKA 133 (406)
Q Consensus 73 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-------------------~~~~~~ 133 (406)
.+..|+||+.+++.|.+ +. . +++.|+|++|+|||+|++++++... ..+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHH
Confidence 44679999999999999 64 2 4899999999999999988865311 122222
Q ss_pred HHHHhc-------------CCC-----C-----------CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc---cCcch
Q 038234 134 IIAALG-------------CET-----S-----------NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY---TKWEP 181 (406)
Q Consensus 134 i~~~l~-------------~~~-----~-----------~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~---~~~~~ 181 (406)
+...+. ... + .......+...+.+... ++.+|||||+++-+. ..+..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 222221 000 0 12345556666655433 499999999976432 22322
Q ss_pred hhhccCCCCCCcEEEEecCChHHHHHh-----------cc-CCccccCCCChHHHHHhhhhhc------------cccch
Q 038234 182 FQRCSANGQCGNNILVTTHKKTVARMM-----------ES-TNFISIKELSTQECWSLFKQES------------SAKPC 237 (406)
Q Consensus 182 l~~~l~~~~~gs~IivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~a~~Lf~~~~------------i~~~c 237 (406)
+...+.....+..+|+|++........ +. ...+.+.+|+.+++.+++.... +...+
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t 239 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKI 239 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHh
Confidence 222222222367899999986543211 11 2578999999999999987632 23333
Q ss_pred ---hHHHHHHhhhhcchhhHHhhhhhccchhhhhhhhhhhHHHHHH-hcc--ccCChhhhhHHhhhcccCCCCccCHHHH
Q 038234 238 ---LLLQKLLGVSCALKELEMSGKNSLDSELWQLQELEKDLFSLLL-LNY--YDLPYRIKQCFRYCFISPKDSCIWKEDL 311 (406)
Q Consensus 238 ---PLai~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~cfl~la~Fp~~~~i~~~~L 311 (406)
|+++..++..+........|... .... ....+..-+. +.+ ..||+..+..+..+|. +. +...+
T Consensus 240 ~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l 308 (357)
T 2fna_A 240 GGIPGWLTYFGFIYLDNKNLDFAINQ---TLEY---AKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDV 308 (357)
T ss_dssp CSCHHHHHHHHHHHHHHCCHHHHHHH---HHHH---HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHH
T ss_pred CCCHHHHHHHHHHHccccchHHHHHH---HHHH---HHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHH
Confidence 99888887765432212222111 0000 1111111111 111 1688899999999998 21 44444
Q ss_pred HHHHH-HCCCcccccCCCHHHHHHHHHHHHHhcCCcceeecCCCCcccEEEE-CHHHHHHH
Q 038234 312 IKLWI-AQSFIEAKENKEMEIIDEEYFDYLTARSFFQEFHKGSDDIITECKM-HDIVHDFA 370 (406)
Q Consensus 312 i~~W~-aeg~i~~~~~~~~e~~~~~~l~~L~~~sll~~~~~~~~~~~~~~~m-Hdlv~~~~ 370 (406)
..... ..|. ..+ ......+++.|++.+||.... ..|++ |++++++.
T Consensus 309 ~~~~~~~~g~-----~~~-~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 309 KRALELEEGI-----EIS-DSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHCS-----CCC-HHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHHHhcCC-----CCC-HHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 33221 1121 011 234567899999999997542 13664 78988864
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=2.3e-11 Score=117.26 Aligned_cols=297 Identities=12% Similarity=0.090 Sum_probs=164.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC----hH--------------HHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK----DF--------------RVAKAIIA 136 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~--------------~~~~~i~~ 136 (406)
+.++||+.+++++.+++........+..+.+.|+|++|+||||||+.+++.. .. .+...++.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 6799999999999998865211002223489999999999999999887532 11 55666666
Q ss_pred HhcCCCCC-CCCHHHHHHHHHhhcc--CcceeEEeeCCCCcCccCcchhhhccCCCC----CCcEEEEecCChHHHHHhc
Q 038234 137 ALGCETSN-LGSLQSLVRCISESIE--GKKYLVVLDDVWTDDYTKWEPFQRCSANGQ----CGNNILVTTHKKTVARMME 209 (406)
Q Consensus 137 ~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~IivTtR~~~v~~~~~ 209 (406)
.++...+. ..+...+...+...+. +++.+||||+++..+......+...+.... .+..||++|+.........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 66543322 2244555555555543 568899999997654444444545443211 3667888877664433221
Q ss_pred -------cCCccccCCCChHHHHHhhhhhccc----cch-hHHHHHHhhhhcch-------hhHHhhhhhccchhh----
Q 038234 210 -------STNFISIKELSTQECWSLFKQESSA----KPC-LLLQKLLGVSCALK-------ELEMSGKNSLDSELW---- 266 (406)
Q Consensus 210 -------~~~~~~l~~L~~~~a~~Lf~~~~i~----~~c-PLai~~~g~~L~~~-------~~~~~w~~~~~~~~~---- 266 (406)
....+.+.+++.++...++...+-. ... |-++..+....... .+.......+.....
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1236899999999999998876511 112 43444443333100 011111111100000
Q ss_pred -hhhh-hhhhH--------HHHHHhccccCChhhhhHHhhhcccC---CCCccCHHHHHHHHHH----CCCcccccCCCH
Q 038234 267 -QLQE-LEKDL--------FSLLLLNYYDLPYRIKQCFRYCFISP---KDSCIWKEDLIKLWIA----QSFIEAKENKEM 329 (406)
Q Consensus 267 -~~~~-~~~~~--------~~~l~~sy~~L~~~~k~cfl~la~Fp---~~~~i~~~~Li~~W~a----eg~i~~~~~~~~ 329 (406)
.... ....+ ...+.-.+..||.+.+.++..++.+. .+-.+....+...+.. .|.. ..+
T Consensus 257 ~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~- 331 (389)
T 1fnn_A 257 NGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER----PRV- 331 (389)
T ss_dssp TTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC----CCC-
T ss_pred hCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC----CCC-
Confidence 0000 00111 12233446778888888888787654 2224555666554432 2211 112
Q ss_pred HHHHHHHHHHHHhcCCcceeec----CCCCcccEEEE----CHHHHHHHHHhhhc
Q 038234 330 EIIDEEYFDYLTARSFFQEFHK----GSDDIITECKM----HDIVHDFAQFLRKN 376 (406)
Q Consensus 330 e~~~~~~l~~L~~~sll~~~~~----~~~~~~~~~~m----Hdlv~~~~~~~~~~ 376 (406)
......+++.|..+++|..... +..|....+++ |+++..+...+..+
T Consensus 332 ~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 332 HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 2356688999999999987554 22233333433 46666666555443
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=1e-10 Score=112.57 Aligned_cols=270 Identities=12% Similarity=0.042 Sum_probs=147.7
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC---------hH--------------HH
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK---------DF--------------RV 130 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---------~~--------------~~ 130 (406)
+..++||+.+++++.+++..... ......+.|+|++|+|||+||+.+++.. .. .+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854311 2345678999999999999999988653 11 45
Q ss_pred HHHHHHHhcCCCCC-CCCHHHHHHHHHhhc--cCcceeEEeeCCCCcCcc--Ccchhhhcc---CCC--CCCcEEEEecC
Q 038234 131 AKAIIAALGCETSN-LGSLQSLVRCISESI--EGKKYLVVLDDVWTDDYT--KWEPFQRCS---ANG--QCGNNILVTTH 200 (406)
Q Consensus 131 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~kr~LlVlDdvw~~~~~--~~~~l~~~l---~~~--~~gs~IivTtR 200 (406)
...++..++...+. ..+...+...+...+ .+++.+||||+++..... ..+.+...+ ... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 66677777654332 223455555555555 456889999999654322 112222222 111 34567777777
Q ss_pred ChHHHH----H-hcc--CCccccCCCChHHHHHhhhhhcc---cc-ch-hHHHHHHhhhhc---chh------hHHhhhh
Q 038234 201 KKTVAR----M-MES--TNFISIKELSTQECWSLFKQESS---AK-PC-LLLQKLLGVSCA---LKE------LEMSGKN 259 (406)
Q Consensus 201 ~~~v~~----~-~~~--~~~~~l~~L~~~~a~~Lf~~~~i---~~-~c-PLai~~~g~~L~---~~~------~~~~w~~ 259 (406)
...... . ... ...+.+.+++.++...++...+- .. .. |-++..+...-. ... ....+..
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 652211 1 111 24789999999999999987641 11 11 222222222221 110 0001110
Q ss_pred hc--cch---hhhhhh-hhhhHHHHHHhccccCChhhhhHHhhhc-ccCCCCccCHHHHHHHHH----HCCCcccccCCC
Q 038234 260 SL--DSE---LWQLQE-LEKDLFSLLLLNYYDLPYRIKQCFRYCF-ISPKDSCIWKEDLIKLWI----AQSFIEAKENKE 328 (406)
Q Consensus 260 ~~--~~~---~~~~~~-~~~~~~~~l~~sy~~L~~~~k~cfl~la-~Fp~~~~i~~~~Li~~W~----aeg~i~~~~~~~ 328 (406)
.. ... ...... ........+.-++..||++.+..++.++ ++-..-.+....+.+... ..|. ...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 330 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL-----EHV 330 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC-----CCC
T ss_pred HHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC-----CCC
Confidence 00 000 000000 0111123455667889998888777666 443223454554444322 2221 111
Q ss_pred HHHHHHHHHHHHHhcCCcceee
Q 038234 329 MEIIDEEYFDYLTARSFFQEFH 350 (406)
Q Consensus 329 ~e~~~~~~l~~L~~~sll~~~~ 350 (406)
....+..+++.|...|+++...
T Consensus 331 ~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 331 TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCeEEEe
Confidence 2346678899999999998754
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=3.7e-10 Score=108.69 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=146.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC-----------h---------------H
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK-----------D---------------F 128 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----------~---------------~ 128 (406)
..++||+.+++++.+++..... ....+.+.|+|++|+|||+||+.+++.. . .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988764211 2335689999999999999999988642 1 1
Q ss_pred HHHHHHHHHhcCCCC--CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccC-cch-hhhccCCCCCCcEEEEecCChHH
Q 038234 129 RVAKAIIAALGCETS--NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTK-WEP-FQRCSANGQCGNNILVTTHKKTV 204 (406)
Q Consensus 129 ~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~IivTtR~~~v 204 (406)
.+...++..+..... ...+...+...+.+.+..++.+|||||++...... .+. +...+... .+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 334455555532211 12234566667777777666699999996543222 222 22222222 57788888886521
Q ss_pred ----HHHh-cc-CCccccCCCChHHHHHhhhhhcc---c-cch-hHHHHHHhhhhc---chh------hHHhhhhhccch
Q 038234 205 ----ARMM-ES-TNFISIKELSTQECWSLFKQESS---A-KPC-LLLQKLLGVSCA---LKE------LEMSGKNSLDSE 264 (406)
Q Consensus 205 ----~~~~-~~-~~~~~l~~L~~~~a~~Lf~~~~i---~-~~c-PLai~~~g~~L~---~~~------~~~~w~~~~~~~ 264 (406)
.... .. ...+.+.+++.++...+|...+- . ..+ |-++..++..-. .+. ....+.......
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1111 11 24899999999999999987641 1 111 323333322221 110 000111000000
Q ss_pred ---hhhhhh-hhhhHHHHHHhccccCChhhhhHHhhhcccCCCCccCHHHHHHHHHHCCCcccccCCCHHHHHHHHHHHH
Q 038234 265 ---LWQLQE-LEKDLFSLLLLNYYDLPYRIKQCFRYCFISPKDSCIWKEDLIKLWIAQSFIEAKENKEMEIIDEEYFDYL 340 (406)
Q Consensus 265 ---~~~~~~-~~~~~~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L 340 (406)
...... ........+..++..|+++.+..+..++....+-.+. +......-..|. ... ......+++..|
T Consensus 257 ~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~----~~~-~~~~~~~~l~~L 330 (384)
T 2qby_B 257 IIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFKQ----KPL-SYRRFSDIISEL 330 (384)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTTC----CCC-CHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcCC----CCC-CHHHHHHHHHHH
Confidence 000000 1111123456677889988888877777611100110 111121212221 111 234566889999
Q ss_pred HhcCCcceeec
Q 038234 341 TARSFFQEFHK 351 (406)
Q Consensus 341 ~~~sll~~~~~ 351 (406)
..+++++....
T Consensus 331 ~~~gli~~~~~ 341 (384)
T 2qby_B 331 DMFGIVKIRII 341 (384)
T ss_dssp HHTTSEEEEEE
T ss_pred HhCCCEEEEec
Confidence 99999987554
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.02 E-value=1.4e-10 Score=103.66 Aligned_cols=152 Identities=11% Similarity=0.155 Sum_probs=95.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~- 141 (406)
.+++||+..++.+..++.... ..+.+.|+|++|+||||||+.+++.... .....+.......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 468999999999999997532 2358899999999999999988764321 0000110000000
Q ss_pred ----CCCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHH-HhccC
Q 038234 142 ----TSNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VAR-MMEST 211 (406)
Q Consensus 142 ----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~-~~~~~ 211 (406)
.......+.+...+... ..+++.+||+||++..+...++.+...+.....+..+|+||+... +.. .....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~ 177 (250)
T 1njg_A 98 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 177 (250)
T ss_dssp EEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHh
Confidence 01111222333333322 245789999999976555556666666655556778888887643 111 11224
Q ss_pred CccccCCCChHHHHHhhhhh
Q 038234 212 NFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~ 231 (406)
..+.+.+++.++..+++...
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHH
Confidence 67899999999999988764
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=1.8e-10 Score=110.70 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=96.3
Q ss_pred CCceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC--------hH------------HHHHH
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK--------DF------------RVAKA 133 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~--------~~------------~~~~~ 133 (406)
+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++.. .. .+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 36799999999999998874211 2335688999999999999999988743 11 23334
Q ss_pred HHHHhcCCCCC-CCCHHHHHHHHHhhcc--CcceeEEeeCCCCcC----ccCcchhhhccCC-CCCCcEEEEecCChHHH
Q 038234 134 IIAALGCETSN-LGSLQSLVRCISESIE--GKKYLVVLDDVWTDD----YTKWEPFQRCSAN-GQCGNNILVTTHKKTVA 205 (406)
Q Consensus 134 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~IivTtR~~~v~ 205 (406)
++..++...+. ..+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 44444322211 1234455555555543 458999999996532 1222233332321 23355677777765432
Q ss_pred HHhc-----c--CCccccCCCChHHHHHhhhhhc
Q 038234 206 RMME-----S--TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 206 ~~~~-----~--~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+. . ...+.+.+++.++..+++...+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 2211 1 2478999999999999998753
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.95 E-value=3.9e-10 Score=99.43 Aligned_cols=149 Identities=12% Similarity=0.064 Sum_probs=92.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++..........+..+ ..........+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM--NASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE--ETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe--ccccccChHHHHHH
Confidence 468999999999999997532 2238999999999999999887642110000000000 01112223333333
Q ss_pred HHhhc------cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHH-HH-HhccCCccccCCCChHHHHH
Q 038234 155 ISESI------EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTV-AR-MMESTNFISIKELSTQECWS 226 (406)
Q Consensus 155 l~~~l------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-~~-~~~~~~~~~l~~L~~~~a~~ 226 (406)
+.... .+++.+||+||++.......+.+...+.....+..+|+||+.... .. .......+.+.+++.++...
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 168 (226)
T 2chg_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (226)
T ss_dssp HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHH
Confidence 33332 367889999999665444455565555544557788888876431 11 11223478999999999988
Q ss_pred hhhhh
Q 038234 227 LFKQE 231 (406)
Q Consensus 227 Lf~~~ 231 (406)
++.+.
T Consensus 169 ~l~~~ 173 (226)
T 2chg_A 169 RLLEI 173 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=1.6e-09 Score=101.63 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=95.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
..++|++..++.+.+++.... ...+.|+|++|+|||++|+.+++......... ..+..........+.+...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYAD--GVLELNASDDRGIDVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHH--HEEEECTTSCCSHHHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccC--CEEEecCccccChHHHHHH
Confidence 468999999999999987532 22389999999999999999876531100000 0111111122233444333
Q ss_pred HHhhc-------cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccccCCCChHHHH
Q 038234 155 ISESI-------EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFISIKELSTQECW 225 (406)
Q Consensus 155 l~~~l-------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~ 225 (406)
+.... .+++.++|+||++......++.+...+.....++.+|+||.... +... ......+.+.+++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 33322 45689999999976554455556665554455678888876642 1111 123458899999999999
Q ss_pred Hhhhhhc
Q 038234 226 SLFKQES 232 (406)
Q Consensus 226 ~Lf~~~~ 232 (406)
.++...+
T Consensus 173 ~~l~~~~ 179 (323)
T 1sxj_B 173 KRLLQII 179 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.74 E-value=6.2e-09 Score=97.76 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=128.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
..++|++..+..+..++..... .......+.|+|++|+|||+||+.+++.....+ ............++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~-------~~~~~~~~~~~~~l~~~ 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-------RVTSGPAIEKPGDLAAI 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE-------EEECTTTCCSHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE-------EEEeccccCChHHHHHH
Confidence 5689999999988887753110 012245688999999999999999876421100 00011122233444444
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCCC------------------CCCcEEEEecCChH-HHHHh-cc-CCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANG------------------QCGNNILVTTHKKT-VARMM-ES-TNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------------------~~gs~IivTtR~~~-v~~~~-~~-~~~ 213 (406)
+...+ .+..+|+||++..........+...+... .++..+|.||.... +...+ .. ...
T Consensus 84 l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~ 162 (324)
T 1hqc_A 84 LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIV 162 (324)
T ss_dssp HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCE
T ss_pred HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEE
Confidence 43322 35679999999654432333333322211 02345666555432 11111 11 357
Q ss_pred cccCCCChHHHHHhhhhhcccc--ch-hHHHHHHhhhhcchhhHHhhhhhccch---h-----hhh-hhhhhhHHHHHHh
Q 038234 214 ISIKELSTQECWSLFKQESSAK--PC-LLLQKLLGVSCALKELEMSGKNSLDSE---L-----WQL-QELEKDLFSLLLL 281 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~i~~--~c-PLai~~~g~~L~~~~~~~~w~~~~~~~---~-----~~~-~~~~~~~~~~l~~ 281 (406)
+.+.+++.++...++.+.+-.. .. |-++..+..+-..+ .......+... . ... ...-..+...+..
T Consensus 163 i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~--~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 163 EHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT--MRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC--HHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred EecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 8999999999988887754111 12 44444444332111 11111111100 0 000 0011122333444
Q ss_pred ccccCChhhhhHHhhhcc-cCCC----------CccCHHHHHH----HHHHCCCccc-ccCCCHHHHHHHHHH-HHHhcC
Q 038234 282 NYYDLPYRIKQCFRYCFI-SPKD----------SCIWKEDLIK----LWIAQSFIEA-KENKEMEIIDEEYFD-YLTARS 344 (406)
Q Consensus 282 sy~~L~~~~k~cfl~la~-Fp~~----------~~i~~~~Li~----~W~aeg~i~~-~~~~~~e~~~~~~l~-~L~~~s 344 (406)
.+..|+...+..+..+.- |..+ ..+++..+.+ +-+..|++.. ..+....+.|.+||+ ++.+|+
T Consensus 241 ~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (324)
T 1hqc_A 241 DELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGP 320 (324)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC--
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCC
Confidence 556677666666655443 3222 1133333322 3455677754 234455677777776 777777
Q ss_pred Ccce
Q 038234 345 FFQE 348 (406)
Q Consensus 345 ll~~ 348 (406)
||||
T Consensus 321 ~~~~ 324 (324)
T 1hqc_A 321 LLEP 324 (324)
T ss_dssp ----
T ss_pred CCCC
Confidence 7774
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=6.4e-09 Score=89.29 Aligned_cols=142 Identities=12% Similarity=0.085 Sum_probs=79.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH----------H-HHHHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR----------V-AKAIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------~-~~~i~~~l~~~~~ 143 (406)
..++||+++++++.+.+... ....+.|+|++|+|||+||+.+++..... + ..........
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 92 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG--- 92 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTT---
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhcc---
Confidence 45899999999999998742 24567899999999999999887653110 0 0000000000
Q ss_pred CCCCHHHHHHHHHhhc-----cCcceeEEeeCCCCcC--------ccCcchhhhccCCCCCCcEEEEecCChHHHHH---
Q 038234 144 NLGSLQSLVRCISESI-----EGKKYLVVLDDVWTDD--------YTKWEPFQRCSANGQCGNNILVTTHKKTVARM--- 207 (406)
Q Consensus 144 ~~~~~~~~~~~l~~~l-----~~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~--- 207 (406)
..........+...+ .+++.+|||||++... ......+...+.. .+..+|+||........
T Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~ 169 (195)
T 1jbk_A 93 -AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp -TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTT
T ss_pred -CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhc
Confidence 011111112222221 3567899999996532 1112223332222 23456666665443211
Q ss_pred ----hccCCccccCCCChHHHHHhh
Q 038234 208 ----MESTNFISIKELSTQECWSLF 228 (406)
Q Consensus 208 ----~~~~~~~~l~~L~~~~a~~Lf 228 (406)
......+.+.+++.++..+++
T Consensus 170 ~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 170 DAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHhceeecCCCCHHHHHHHh
Confidence 122335889999998887765
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=1.5e-08 Score=95.09 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=91.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++.............+. ..+....+.+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN--ASDERGINVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE--TTCHHHHHTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee--ccccCchHHHHHH
Confidence 45899999999999998753 233489999999999999999887532100000000011 0110011111111
Q ss_pred HHhh-----c-cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccccCCCChHHHHH
Q 038234 155 ISES-----I-EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFISIKELSTQECWS 226 (406)
Q Consensus 155 l~~~-----l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~ 226 (406)
+... + .+++.++|+||++......++.+...+.....++++|+||.... +... ......+.+.+++.++...
T Consensus 97 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 97 VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHH
T ss_pred HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHH
Confidence 2211 2 26788999999976554555566666655455778888887642 1111 1223478999999999999
Q ss_pred hhhhhc
Q 038234 227 LFKQES 232 (406)
Q Consensus 227 Lf~~~~ 232 (406)
++...+
T Consensus 177 ~l~~~~ 182 (327)
T 1iqp_A 177 RLRYIA 182 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.59 E-value=7.9e-08 Score=89.45 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=92.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------------------HHH
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------------------RVA 131 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~~~ 131 (406)
.+.||+++++++...|...-. ......+.|+|++|+|||++++.+++.... .+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999887764321 345678899999999999999999875421 567
Q ss_pred HHHHHHhcCCCCCCC-CHHHHHHHHHhh--ccCcceeEEeeCCCCcCccCcchhhhccC--CCC-CCcEEEEecCCh---
Q 038234 132 KAIIAALGCETSNLG-SLQSLVRCISES--IEGKKYLVVLDDVWTDDYTKWEPFQRCSA--NGQ-CGNNILVTTHKK--- 202 (406)
Q Consensus 132 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~--l~~kr~LlVlDdvw~~~~~~~~~l~~~l~--~~~-~gs~IivTtR~~--- 202 (406)
..++.++.+...... ..+.+...+... -.+++++++||++..-. .-+.+...+. ... ....||.++..-
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 788888865432222 233333333332 24678999999995432 2223333221 111 122333333321
Q ss_pred H--HHHHh-cc--CCccccCCCChHHHHHhhhhhc
Q 038234 203 T--VARMM-ES--TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 203 ~--v~~~~-~~--~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. +.... .. ...+.+.+++.++-..++.+++
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1 11111 11 2468999999999999888765
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=1.8e-07 Score=89.45 Aligned_cols=153 Identities=11% Similarity=0.180 Sum_probs=94.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHh----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAAL---- 138 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l---- 138 (406)
.+++|++..++.+.+.+... ...+.+.|+|++|+|||++|+.+++.... .....+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 45899999999999998753 22457889999999999999988753211 0111111000
Q ss_pred ---cCC-CCCCCCHHHHHHHHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHH-HhccC
Q 038234 139 ---GCE-TSNLGSLQSLVRCISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VAR-MMEST 211 (406)
Q Consensus 139 ---~~~-~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~-~~~~~ 211 (406)
... .........+...+... ..+++.++|+||++..+....+.+...+.....+..+|++|.... +.. .....
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 91 IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp EEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTS
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhhe
Confidence 000 01123344444443322 246778999999976554555666666655455667777766432 111 12234
Q ss_pred CccccCCCChHHHHHhhhhhc
Q 038234 212 NFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 212 ~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+.+.+++.++...++.+.+
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHH
Confidence 678999999999998887644
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.53 E-value=6.2e-08 Score=90.43 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=91.6
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCCCHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET-SNLGSLQSLVR 153 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~ 153 (406)
.+++|++..++.+.+++... ....+.++|++|+|||++|+.+++.............+.... ...........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHH
Confidence 45899999999988888642 222389999999999999998876531000000000111111 11122222222
Q ss_pred HHHhh--c-cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccccCCCChHHHHHhh
Q 038234 154 CISES--I-EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFISIKELSTQECWSLF 228 (406)
Q Consensus 154 ~l~~~--l-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~Lf 228 (406)
.+... + .+++.++|+|++........+.+...+.....++.+|+||.... +... ......+.+.+++.++...++
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 170 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHH
T ss_pred HHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHH
Confidence 22211 2 26688999999965544445556666665556777887776543 1111 122457899999999998888
Q ss_pred hhhc
Q 038234 229 KQES 232 (406)
Q Consensus 229 ~~~~ 232 (406)
...+
T Consensus 171 ~~~~ 174 (319)
T 2chq_A 171 LEIC 174 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=1.5e-07 Score=86.60 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.+++|.+..+++|.+.+...... +....+.+.|+|++|+|||+||+.+++.....+.......+... ....
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~--~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK--FIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC--STTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh--ccch
Confidence 56899999999998877431000 01234568999999999999999997654321000000000000 0111
Q ss_pred -HHHHHHHHHhhccCcceeEEeeCCCCc-----------CccCcchhhhcc---C--CCCCCcEEEEecCChHH-----H
Q 038234 148 -LQSLVRCISESIEGKKYLVVLDDVWTD-----------DYTKWEPFQRCS---A--NGQCGNNILVTTHKKTV-----A 205 (406)
Q Consensus 148 -~~~~~~~l~~~l~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~--~~~~gs~IivTtR~~~v-----~ 205 (406)
...+...+......++.+|+||++... +......+...+ . ....+..||.||..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~ 174 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHc
Confidence 122223333334456789999999432 000011122221 1 12335667777765422 1
Q ss_pred HHhccCCccccCCCChHHHHHhhhhh
Q 038234 206 RMMESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 206 ~~~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
....-...+.+...+.++..++|...
T Consensus 175 ~~~Rf~~~i~~~~p~~~~r~~il~~~ 200 (285)
T 3h4m_A 175 RPGRFDRIIEVPAPDEKGRLEILKIH 200 (285)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCHHHHHHHHHHH
Confidence 11011346888999999888888654
No 22
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.24 E-value=9e-08 Score=81.68 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=37.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998642 2446789999999999999988764
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=2.1e-06 Score=83.98 Aligned_cols=143 Identities=16% Similarity=0.223 Sum_probs=83.1
Q ss_pred CceecchhhH---HHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHH
Q 038234 75 SEICGRDYKK---NELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSL 151 (406)
Q Consensus 75 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 151 (406)
.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+++.....+. .+.. .......+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~-----~l~a---~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANADVE-----RISA---VTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE-----EEET---TTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE-----EEEe---ccCCHHHH
Confidence 4688988777 6777777643 3467899999999999999998865421100 0000 11122222
Q ss_pred HHHHHh----hccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH--H-HHHhccCCccccCCCChHHH
Q 038234 152 VRCISE----SIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT--V-ARMMESTNFISIKELSTQEC 224 (406)
Q Consensus 152 ~~~l~~----~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~--v-~~~~~~~~~~~l~~L~~~~a 224 (406)
...+.. ...+++.+|+||+++.......+.+...+.. +.-.-|..||.+.. + ........++.+.+++.++.
T Consensus 92 r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi 170 (447)
T 3pvs_A 92 REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170 (447)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence 222211 1246788999999977655555566665554 22223334665542 1 12223355788999999998
Q ss_pred HHhhhhhc
Q 038234 225 WSLFKQES 232 (406)
Q Consensus 225 ~~Lf~~~~ 232 (406)
..++.+..
T Consensus 171 ~~il~~~l 178 (447)
T 3pvs_A 171 EQVLTQAM 178 (447)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.22 E-value=5.5e-06 Score=77.98 Aligned_cols=148 Identities=11% Similarity=0.122 Sum_probs=84.9
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.....+. .+ ..........+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~-----~~--~~~~~~~~~~~~~~ 100 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEMSANIK-----TT--AAPMIEKSGDLAAI 100 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE-----EE--EGGGCCSHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE-----Ee--cchhccchhHHHHH
Confidence 5689999999999888864210 0123456899999999999999998664321000 00 00011222333333
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCCCC------------------CCcEEEEecCChH-HHHH-hcc-CCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQ------------------CGNNILVTTHKKT-VARM-MES-TNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~IivTtR~~~-v~~~-~~~-~~~ 213 (406)
+.. ..+..+|+||++..........+...+.... ++..+|.+|.... +... ... ...
T Consensus 101 ~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~ 178 (338)
T 3pfi_A 101 LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQ 178 (338)
T ss_dssp HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEE
Confidence 333 2466799999996544333333433332211 1235555555422 1111 111 367
Q ss_pred cccCCCChHHHHHhhhhhc
Q 038234 214 ISIKELSTQECWSLFKQES 232 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.+.+++.++...++.+.+
T Consensus 179 i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 179 FRLEFYKDSELALILQKAA 197 (338)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred eeCCCcCHHHHHHHHHHHH
Confidence 8999999999998888755
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.21 E-value=3.8e-06 Score=82.17 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=73.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH-------------HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF-------------RVAKAIIAALGCETSNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
...+.|+|++|+||||||+.+++.... .+...+...+... ... .+...+..+.-+|+|
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~vL~I 200 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG-----KLN----EFREKYRKKVDILLI 200 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTT-----CHH----HHHHHHTTTCSEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcc-----cHH----HHHHHhcCCCCEEEE
Confidence 567899999999999999998874311 2223333322211 111 122223336779999
Q ss_pred eCCCCcCc--cCcchhhhccCC-CCCCcEEEEecCC---------hHHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 169 DDVWTDDY--TKWEPFQRCSAN-GQCGNNILVTTHK---------KTVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 169 Ddvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
||++.... ...+.+...+.. ...|..||+||.+ +.+...+....++.+.+++.++-..++.+.+
T Consensus 201 DEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp ECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred eCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 99965432 112223333321 1346678888876 2344444445788999999999999888765
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.21 E-value=3e-07 Score=81.90 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=73.7
Q ss_pred Cceecch---hhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHH
Q 038234 75 SEICGRD---YKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSL 151 (406)
Q Consensus 75 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 151 (406)
..|+|.+ ..++.+..++.. +..+.+.|+|++|+|||+||+.+++..... +.... ..+...+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---------~~~~~-~~~~~~~ 91 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARANEL---------ERRSF-YIPLGIH 91 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEE-EEEGGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEE-EEEHHHH
Confidence 3466632 445555555543 235678999999999999999887643210 00000 0000000
Q ss_pred HHHHHhhc--cCcceeEEeeCCCCcCccC--cchhhhccCCC-CCC-cEEEEecCCh---------HHHHHhccCCcccc
Q 038234 152 VRCISESI--EGKKYLVVLDDVWTDDYTK--WEPFQRCSANG-QCG-NNILVTTHKK---------TVARMMESTNFISI 216 (406)
Q Consensus 152 ~~~l~~~l--~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~g-s~IivTtR~~---------~v~~~~~~~~~~~l 216 (406)
...+.+.+ -.++.+|||||++...... .+.+...+... ..+ ..+|+||+.. .+...+.....+.+
T Consensus 92 ~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l 171 (242)
T 3bos_A 92 ASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL 171 (242)
T ss_dssp GGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred HHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence 00111111 1456799999996543222 22233332111 112 2477766532 22222222367899
Q ss_pred CCCChHHHHHhhhhh
Q 038234 217 KELSTQECWSLFKQE 231 (406)
Q Consensus 217 ~~L~~~~a~~Lf~~~ 231 (406)
.+++.++..+++...
T Consensus 172 ~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 172 QPMMDDEKLAALQRR 186 (242)
T ss_dssp CCCCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999988887764
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.17 E-value=6.2e-07 Score=84.10 Aligned_cols=139 Identities=13% Similarity=0.140 Sum_probs=85.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
.+++|.+..++.+.+++... ...+++.+.|++|+|||++|+.+++.....+. .+.. .....+.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~-----~i~~---~~~~~~~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDVNADMM-----FVNG---SDCKIDFVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE-----EEET---TTCCHHHHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE-----EEcc---cccCHHHHHHH
Confidence 56899999999999999853 33467888899999999999998765421000 0011 11123333333
Q ss_pred HHhhc-----cCcceeEEeeCCCCcC-ccCcchhhhccCCCCCCcEEEEecCChH-----HHHHhccCCccccCCCChHH
Q 038234 155 ISESI-----EGKKYLVVLDDVWTDD-YTKWEPFQRCSANGQCGNNILVTTHKKT-----VARMMESTNFISIKELSTQE 223 (406)
Q Consensus 155 l~~~l-----~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~~ 223 (406)
+.+.. .+++.+|++|++.... ....+.+...+.....+..+|+||.... +... ...+.+.+++.++
T Consensus 93 ~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e 169 (324)
T 3u61_B 93 LTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDED 169 (324)
T ss_dssp HHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHH
T ss_pred HHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHH
Confidence 33322 2477899999996544 3334445444433334567887776543 2222 3578999999888
Q ss_pred HHHhhh
Q 038234 224 CWSLFK 229 (406)
Q Consensus 224 a~~Lf~ 229 (406)
-..++.
T Consensus 170 ~~~il~ 175 (324)
T 3u61_B 170 KIEMMK 175 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=9.7e-07 Score=83.58 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=86.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH-HHHHHHHHhcCCCCCCCCHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR-VAKAIIAALGCETSNLGSLQSLVR 153 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 153 (406)
..++|++..++.+..++.... ...+.|+|++|+||||+|+.+++..... ..... ..............+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR--ILELNASDERGISIVRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS--EEEECSSSCCCHHHHTT
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc--eEEEccccccchHHHHH
Confidence 468999999999999987532 2238899999999999999987754211 00000 00001111112222222
Q ss_pred HHHhhc----------------cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccc
Q 038234 154 CISESI----------------EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFIS 215 (406)
Q Consensus 154 ~l~~~l----------------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~ 215 (406)
.+.... .+++-+|++|++........+.+...+.......++|++|.... +... ......+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 221111 23456999999865443334445555544444566777665432 1111 12235788
Q ss_pred cCCCChHHHHHhhhhhc
Q 038234 216 IKELSTQECWSLFKQES 232 (406)
Q Consensus 216 l~~L~~~~a~~Lf~~~~ 232 (406)
+.+++.++....+...+
T Consensus 189 ~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 189 FKALDASNAIDRLRFIS 205 (353)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 99999999888887654
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.13 E-value=6.8e-06 Score=78.29 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred CceecchhhHHH---HHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNE---LLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|++..+.. +.+.+... ....+.+.|+|++|+|||+||+.+++.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999988666 45555433 223468899999999999999998764
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.12 E-value=3.5e-06 Score=76.20 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=76.1
Q ss_pred CceecchhhHHHHHHHHh---cCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC----CC
Q 038234 75 SEICGRDYKKNELLSKLL---SDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET----SN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~----~~ 144 (406)
.+++|.+..++.+.+++. .... -+....+.+.|+|++|+|||+||+.+++.....+. .+.... ..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-----~~~~~~~~~~~~ 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL-----AMAGAEFVEVIG 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE-----EEETTTTSSSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-----EechHHHHhhcc
Confidence 458899887777765542 2110 00133456889999999999999998764321000 000000 00
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCCCc------------CccCcc---hhhhccCC--CCCCcEEEEecCChHHHH-
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVWTD------------DYTKWE---PFQRCSAN--GQCGNNILVTTHKKTVAR- 206 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~------------~~~~~~---~l~~~l~~--~~~gs~IivTtR~~~v~~- 206 (406)
......+...+.......+.+|+||++... +..... .+...+.. ...+..||.||.......
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 011122333333344456789999999543 111111 12222221 123456666665543211
Q ss_pred H-hc--c-CCccccCCCChHHHHHhhhhh
Q 038234 207 M-ME--S-TNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 207 ~-~~--~-~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
. .. . ...+.+...+.++-.+++...
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 1 11 1 345677888888877777653
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=2.5e-06 Score=80.83 Aligned_cols=153 Identities=9% Similarity=0.037 Sum_probs=84.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC-h-----HHHHHHHH-------HH----
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK-D-----FRVAKAII-------AA---- 137 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~-----~~~~~~i~-------~~---- 137 (406)
.+++|.+..++.+.+++... ..... +.|+|++|+||||+|+.+++.. . ..+...-+ ..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~----~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP----RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT----TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC----CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 45889998888888877222 12233 8999999999999998876621 1 00000000 00
Q ss_pred -------hcCCCCCCCCHHHHHHHHHhhc--------------cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEE
Q 038234 138 -------LGCETSNLGSLQSLVRCISESI--------------EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNIL 196 (406)
Q Consensus 138 -------l~~~~~~~~~~~~~~~~l~~~l--------------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 196 (406)
+............+...+.+.. .+++-++|||++...+....+.+...+.....++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 0000000111111222222221 2356699999996655444455555554334466777
Q ss_pred EecCCh-HHHHH-hccCCccccCCCChHHHHHhhhhhc
Q 038234 197 VTTHKK-TVARM-MESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 197 vTtR~~-~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
++|.+. .+... ......+.+.+++.++....+.+.+
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 776653 22221 2234678999999999988887654
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.09 E-value=3.8e-06 Score=71.54 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCCCCCC
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~~~~~ 147 (406)
....++.+.+++..-. ......+.|+|++|+||||||+.+++.... ++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKD---- 91 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchH----
Confidence 3344555555554332 233568999999999999999988765421 222222222211110
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCccCcc--hhhhccCC-CCCCcEEEEecCC
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDYTKWE--PFQRCSAN-GQCGNNILVTTHK 201 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~--~l~~~l~~-~~~gs~IivTtR~ 201 (406)
..+...+ .+.-+|||||++....+.|. .+...+.. ...|..+|+||..
T Consensus 92 -~~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 -TKFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -SHHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -HHHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0122222 14579999999743333343 23332321 1246678888875
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.06 E-value=7.1e-07 Score=81.53 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=76.7
Q ss_pred CceecchhhHHHHHH-------HHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCC
Q 038234 75 SEICGRDYKKNELLS-------KLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET-SNLG 146 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~-~~~~ 146 (406)
..++|....++++.. .+.... ......+.|+|++|+|||+||+.+++.....+. .+.... ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~-----~i~~~~~~~g~ 104 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI-----KICSPDKMIGF 104 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE-----EEECGGGCTTC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE-----EEeCHHHhcCC
Confidence 346787777666655 332211 345678999999999999999998764211000 000000 0000
Q ss_pred CH----HHHHHHHHhhccCcceeEEeeCCCCc------Ccc----CcchhhhccCC---CCCCcEEEEecCChHHHHHh-
Q 038234 147 SL----QSLVRCISESIEGKKYLVVLDDVWTD------DYT----KWEPFQRCSAN---GQCGNNILVTTHKKTVARMM- 208 (406)
Q Consensus 147 ~~----~~~~~~l~~~l~~kr~LlVlDdvw~~------~~~----~~~~l~~~l~~---~~~gs~IivTtR~~~v~~~~- 208 (406)
.. ..+...+......+..+|+||++... ... ....+...+.. .+....||.||.........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 105 SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 11 22233333344467889999998432 110 11223232222 22344567777776544431
Q ss_pred --cc-CCccccCCCCh-HHHHHhhhh
Q 038234 209 --ES-TNFISIKELST-QECWSLFKQ 230 (406)
Q Consensus 209 --~~-~~~~~l~~L~~-~~a~~Lf~~ 230 (406)
+. ...+.+.+++. ++...++.+
T Consensus 185 l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp CTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhcccceEEcCCCccHHHHHHHHHHh
Confidence 11 45577888877 554444443
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=4.3e-06 Score=83.59 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=83.1
Q ss_pred CceecchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDS-----------SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~ 143 (406)
.+++|++..++++.++|.... ..+.+..+.+.|+|++|+|||++|+.+++.....+ +.....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~-------i~in~s 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI-------LEQNAS 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE-------EEECTT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE-------EEEeCC
Confidence 568999999999999987510 00012357899999999999999999987542100 000000
Q ss_pred CCCCHHHHHHHHHh------------------hccCcceeEEeeCCCCcCccC---cchhhhccCCCCCCcEEEEecCCh
Q 038234 144 NLGSLQSLVRCISE------------------SIEGKKYLVVLDDVWTDDYTK---WEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 144 ~~~~~~~~~~~l~~------------------~l~~kr~LlVlDdvw~~~~~~---~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
.......+...+.. ...+++.+|+||++....... +..+...+... +..||+++.+.
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 00111111111110 123577899999995543222 13333333222 22344444332
Q ss_pred ---HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 203 ---TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 203 ---~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+.........+.+.+++.++...++...+
T Consensus 190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCccchhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence 122222234578999999999888887654
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=1.6e-05 Score=74.36 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCCHHHHH
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGSLQSLV 152 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~~~~~~ 152 (406)
...+...+... ......+.|+|++|+||||||+.+++.... .+...+...+.. ......
T Consensus 23 ~~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~- 92 (324)
T 1l8q_A 23 YEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKK-----GTINEF- 92 (324)
T ss_dssp HHHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHH-----TCHHHH-
T ss_pred HHHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHc-----CcHHHH-
Confidence 34455555432 123457899999999999999998874311 222222222211 011111
Q ss_pred HHHHhhccCcceeEEeeCCCCcCcc--CcchhhhccCC-CCCCcEEEEecCCh---------HHHHHhccCCccccCCCC
Q 038234 153 RCISESIEGKKYLVVLDDVWTDDYT--KWEPFQRCSAN-GQCGNNILVTTHKK---------TVARMMESTNFISIKELS 220 (406)
Q Consensus 153 ~~l~~~l~~kr~LlVlDdvw~~~~~--~~~~l~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~ 220 (406)
...+ .+.-+|+|||+...... ....+...+.. ...|..||+||.+. .+...+....++.+.+ +
T Consensus 93 ---~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~ 167 (324)
T 1l8q_A 93 ---RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-D 167 (324)
T ss_dssp ---HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-C
T ss_pred ---HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-C
Confidence 1111 23679999999553321 11223333211 12355777777532 2333333446789999 9
Q ss_pred hHHHHHhhhhhc
Q 038234 221 TQECWSLFKQES 232 (406)
Q Consensus 221 ~~~a~~Lf~~~~ 232 (406)
.++...++...+
T Consensus 168 ~~e~~~il~~~~ 179 (324)
T 1l8q_A 168 NKTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888765
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=8.4e-06 Score=75.65 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=82.9
Q ss_pred ceecchhhHHHHHHHHhcCC---------CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHH-------HHHHHHHHhc
Q 038234 76 EICGRDYKKNELLSKLLSDS---------SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFR-------VAKAIIAALG 139 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~~~~i~~~l~ 139 (406)
.++|.+..++.+.+.+.... -........+.|+|++|+|||+||+.+++..... +...-...+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 47898888888776653110 0002335578999999999999998876643210 0000000000
Q ss_pred CCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCc---------CccCcchhhhccCCCCCCcEEEEecCChHHHHHh--
Q 038234 140 CETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTD---------DYTKWEPFQRCSANGQCGNNILVTTHKKTVARMM-- 208 (406)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~~-- 208 (406)
.... ......+...+... +..+|+||++..- .......+...+.....+..||+||.........
T Consensus 112 ~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~ 187 (309)
T 3syl_A 112 GQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187 (309)
T ss_dssp CSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHH
T ss_pred hhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhh
Confidence 0000 01112222222222 3569999999532 2222234444444444566777777653321111
Q ss_pred -----c-cCCccccCCCChHHHHHhhhhhc
Q 038234 209 -----E-STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 209 -----~-~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. ....+.+.+++.++-..++...+
T Consensus 188 ~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp STTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 1 13778999999999988887754
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=5e-06 Score=78.46 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=85.4
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
..++|.+..++.|...+... ....+.++|++|+||||+|+.+++.............+ ........+.+...
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~--~~~~~~~~~~ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL--NASDDRGIDVVRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE--CTTSCCSHHHHHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE--cCcccccHHHHHHH
Confidence 35788888888888888743 22238999999999999999887653210000000011 11111223333333
Q ss_pred HHhh------ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHH-hccCCccccCCCChHHHHH
Q 038234 155 ISES------IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARM-MESTNFISIKELSTQECWS 226 (406)
Q Consensus 155 l~~~------l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~~a~~ 226 (406)
+... +.+.+-++|+|++........+.+...+......+.+|++|.... +... ......+.+.+++.++...
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 3222 223467899999965443344445555543344566776665432 1111 1223467899999998887
Q ss_pred hhhhhc
Q 038234 227 LFKQES 232 (406)
Q Consensus 227 Lf~~~~ 232 (406)
.+.+.+
T Consensus 177 ~l~~~~ 182 (340)
T 1sxj_C 177 RIANVL 182 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.93 E-value=2.5e-06 Score=70.02 Aligned_cols=113 Identities=14% Similarity=0.029 Sum_probs=62.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCC-CCCCCCHHHHHHH
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCE-TSNLGSLQSLVRC 154 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~ 154 (406)
.++|+...+.++.+.+..-.. ...-|.|+|.+|+|||++|+.+++.....-. .+. +... ....... ...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~-~~v--~~~~~~~~~~~~---~~~ 71 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQG-EFV--YRELTPDNAPQL---NDF 71 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTS-CCE--EEECCTTTSSCH---HHH
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCC-CEE--EECCCCCcchhh---hcH
Confidence 478999999999988754321 1234689999999999999999876421000 000 1101 0111111 111
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK 201 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 201 (406)
+.. .+.-.|+||++..........+...+.......+||.||..
T Consensus 72 ~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 72 IAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp HHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred HHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 221 13457999999655443334455554333445567766654
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=1e-05 Score=75.78 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=83.0
Q ss_pred CceecchhhHHHHHHHHhcC------CCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLLSD------SSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.+++|.+..++.|.+.+... -.....+.+-+.|+|++|+|||+||+++++.....+..--...+... .....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~--~~g~~ 95 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK--WMGES 95 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT--TGGGH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc--ccchH
Confidence 56899999999998877210 00012345678999999999999999998753220000000000000 01112
Q ss_pred HH-HHHHHHhhccCcceeEEeeCCCCcCcc-------C----cchhhhccC---CCCCCcEEEEecCChH-----HHHHh
Q 038234 149 QS-LVRCISESIEGKKYLVVLDDVWTDDYT-------K----WEPFQRCSA---NGQCGNNILVTTHKKT-----VARMM 208 (406)
Q Consensus 149 ~~-~~~~l~~~l~~kr~LlVlDdvw~~~~~-------~----~~~l~~~l~---~~~~gs~IivTtR~~~-----v~~~~ 208 (406)
.. +...+...-..++.+|+||++...... . ...+...+. ....+..||.||.... +..
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~-- 173 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 173 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--
Confidence 22 222223333456789999999532110 0 122222222 2233555665666532 222
Q ss_pred ccCCccccCCCChHHHHHhhhhhc
Q 038234 209 ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 209 ~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.-...+.+...+.++-.++|...+
T Consensus 174 Rf~~~i~~~~p~~~~r~~il~~~~ 197 (322)
T 3eie_A 174 RFERRIYIPLPDLAARTTMFEINV 197 (322)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCeEEEeCCCCHHHHHHHHHHHh
Confidence 224567788888888888887654
No 40
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.89 E-value=2.1e-05 Score=77.61 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=76.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHH-HHHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVA-KAIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~-~~i~~~l~~~~~ 143 (406)
+.++||+.++..+...|.... ..-+.|+|++|+|||+||+.+++.... .+. ........ ..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~--g~ 251 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR--GE 251 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcccc--ch
Confidence 468999999999999997532 334579999999999999988764210 000 00000000 00
Q ss_pred CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHH-------HhccCCcccc
Q 038234 144 NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVAR-------MMESTNFISI 216 (406)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~-------~~~~~~~~~l 216 (406)
.......+.. ..-..++.+|++|. ..+..+.+...+.. ....+|.+|....... .......+.+
T Consensus 252 ~e~~~~~~~~---~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v 322 (468)
T 3pxg_A 252 FEDRLKKVMD---EIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (468)
T ss_dssp -CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred HHHHHHHHHH---HHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence 0112222333 23335678999992 11222334444432 1345555554433111 1122346899
Q ss_pred CCCChHHHHHhhhhhc
Q 038234 217 KELSTQECWSLFKQES 232 (406)
Q Consensus 217 ~~L~~~~a~~Lf~~~~ 232 (406)
.+.+.++...++....
T Consensus 323 ~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 323 DQPSVDESIQILQGLR 338 (468)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887643
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=3.1e-06 Score=89.85 Aligned_cols=148 Identities=15% Similarity=0.195 Sum_probs=76.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHHHHHHHHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVAKAIIAALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~~i~~~l~~~~~~ 144 (406)
..++||+.++..+++.|.... ...+.++|.+|+|||+||+.+++.... .+..--...+......
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 458999999999999997532 334689999999999999988764311 0000000000000000
Q ss_pred CCCHHH-HHHHHHhhcc-CcceeEEeeCCCCcC--------ccCcchhhhccCCCCCCcEEEEecCChHHHHH------h
Q 038234 145 LGSLQS-LVRCISESIE-GKKYLVVLDDVWTDD--------YTKWEPFQRCSANGQCGNNILVTTHKKTVARM------M 208 (406)
Q Consensus 145 ~~~~~~-~~~~l~~~l~-~kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~------~ 208 (406)
..+... +...+...-. +++.+|++|++..-. .+..+.+...+.. .+..+|.+|........ .
T Consensus 244 ~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~ 321 (854)
T 1qvr_A 244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALE 321 (854)
T ss_dssp --CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTC
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHH
Confidence 111122 2222222222 467899999995432 1111223333322 13345555544332111 1
Q ss_pred ccCCccccCCCChHHHHHhhhh
Q 038234 209 ESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 209 ~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
.....+.+.+++.++...++..
T Consensus 322 rRf~~i~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 322 RRFQPVYVDEPTVEETISILRG 343 (854)
T ss_dssp SCCCCEEECCCCHHHHHHHHHH
T ss_pred hCCceEEeCCCCHHHHHHHHHh
Confidence 1234588999999999888864
No 42
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.86 E-value=5e-06 Score=68.08 Aligned_cols=108 Identities=8% Similarity=0.054 Sum_probs=58.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH-HHHHHH
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL-QSLVRC 154 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~ 154 (406)
.++|++..++++.+.+..-. ....-|.|+|.+|+|||++|+.+++... .+. ..+.... ......
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~---------~~~--~~~~~~~~~~~~~~ 69 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT---------PWV--SPARVEYLIDMPME 69 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS---------CEE--CCSSTTHHHHCHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC---------CeE--EechhhCChHhhhh
Confidence 57899998888888775421 1122477999999999999999987643 000 0011111 111111
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCCC-CCCcEEEEecC
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANG-QCGNNILVTTH 200 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR 200 (406)
+.+. .+.-.|+||++..........+...+... ..+.++|.||.
T Consensus 70 ~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 70 LLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred HHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1111 23457899999654433333344433322 23467777765
No 43
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=5.1e-05 Score=70.30 Aligned_cols=145 Identities=12% Similarity=0.002 Sum_probs=87.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--HHHHHHHHHhcCCCCCCCCHHHHHH---
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--RVAKAIIAALGCETSNLGSLQSLVR--- 153 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~--- 153 (406)
|-++.++.|.+.+... . .+...++|++|+|||++|..+.+.... .-..++ ..+... ......+++..
T Consensus 1 g~~~~~~~L~~~i~~~-----~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~-~~~~~id~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPE-GENIGIDDIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC-----S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCS-SSCBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC-----C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCC-cCCCCHHHHHHHHH
Confidence 3445567777777642 2 678999999999999999998762000 000000 000110 01223333333
Q ss_pred HHHhh-ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh-HHHHHhccCCccccCCCChHHHHHhhhhh
Q 038234 154 CISES-IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK-TVARMMESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 154 ~l~~~-l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
..... ..+++-++|+|++...+....+.+...+....+.+.+|++|.+. .+...+... .+++.+++.++....+.+.
T Consensus 73 ~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 73 FLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp HHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHH
T ss_pred HHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHH
Confidence 22221 23567799999997766666677777776555677777766553 444444445 9999999999998888775
Q ss_pred c
Q 038234 232 S 232 (406)
Q Consensus 232 ~ 232 (406)
.
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 3
No 44
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00015 Score=68.10 Aligned_cols=147 Identities=10% Similarity=0.035 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCC-----C-
Q 038234 81 DYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCE-----T- 142 (406)
Q Consensus 81 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~-----~- 142 (406)
++..+.+.+.+... ...+.+.++|++|+|||++|+.+.+.... .....+...-..+ .
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 45566777777642 33567899999999999999887653210 1111111110000 0
Q ss_pred --CCCCCHHHHHHHHHhh----ccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChH-HHHHh-ccCCcc
Q 038234 143 --SNLGSLQSLVRCISES----IEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKT-VARMM-ESTNFI 214 (406)
Q Consensus 143 --~~~~~~~~~~~~l~~~----l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-v~~~~-~~~~~~ 214 (406)
......+++...+... ..+++-++|+|+++..+....+.+...+.....++.+|++|.+.. +...+ +....+
T Consensus 83 ~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~ 162 (334)
T 1a5t_A 83 KGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (334)
T ss_dssp TTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceee
Confidence 0112333333322222 235678999999976655555666666665555677777766642 22222 335678
Q ss_pred ccCCCChHHHHHhhhhhc
Q 038234 215 SIKELSTQECWSLFKQES 232 (406)
Q Consensus 215 ~l~~L~~~~a~~Lf~~~~ 232 (406)
.+.+++.++....+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999988887764
No 45
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=1.8e-05 Score=68.49 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=54.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH-----------HHHHHHHHHhcCCCCCCCCHHHH
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF-----------RVAKAIIAALGCETSNLGSLQSL 151 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------~~~~~i~~~l~~~~~~~~~~~~~ 151 (406)
.++.+.+++..... ......+.|+|++|+|||+||+.+++.... .+...+..... ......+
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 109 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQ-----DQTMNEK 109 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC--------CCCHHH
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhc-----cchHHHH
Confidence 44555666654321 112267899999999999999988864321 22222222111 1112233
Q ss_pred HHHHHhhccCcceeEEeeCCCCcCccCcch--hhh-ccCCC-CCCcEEEEecCC
Q 038234 152 VRCISESIEGKKYLVVLDDVWTDDYTKWEP--FQR-CSANG-QCGNNILVTTHK 201 (406)
Q Consensus 152 ~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~IivTtR~ 201 (406)
...+.+ .-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 110 ~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 110 LDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 333322 2499999996644444432 222 22211 234568887775
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=1.3e-05 Score=76.05 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=81.2
Q ss_pred CceecchhhHHHHHHHHhcC---C---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLLSD---S---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+++++.....+...-...+..... ....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~-g~~~ 129 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM-GESE 129 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----CH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc-chHH
Confidence 46899999999988876311 0 001223456889999999999999999875432000000000101100 1112
Q ss_pred HHHHHHHHhhccCcceeEEeeCCCCcCccC-----------cchhhhccC---CCCCCcEEEEecCChH-----HHHHhc
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVWTDDYTK-----------WEPFQRCSA---NGQCGNNILVTTHKKT-----VARMME 209 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~-----------~~~l~~~l~---~~~~gs~IivTtR~~~-----v~~~~~ 209 (406)
..+...+......++.+|+||++....... ...+...+. ....+..||.||.... +.. .
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--R 207 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--R 207 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--T
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--c
Confidence 222223333334678899999995432110 122222221 1233455665665432 222 2
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-...+.+...+.++-..+|....
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHH
Confidence 24567788888888888877644
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.78 E-value=5.2e-05 Score=70.20 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=83.0
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHH----HHHHHHHhcCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRV----AKAIIAALGCETS 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~~~i~~~l~~~~~ 143 (406)
.+++|.+..+++|.+.+..... -+-...+.+.|+|++|+|||+||+.+++.....+ ...+.....+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~- 93 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES- 93 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch-
Confidence 4688999888888877642100 0013356789999999999999999987643200 011111111111
Q ss_pred CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc----------cC----cchhhhccCC--CCCCcEEEEecCChHHH-H
Q 038234 144 NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY----------TK----WEPFQRCSAN--GQCGNNILVTTHKKTVA-R 206 (406)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~----------~~----~~~l~~~l~~--~~~gs~IivTtR~~~v~-~ 206 (406)
...+...+.......+.+|+||++..... .. ...+...+.. ...+..||.||...... .
T Consensus 94 ----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 94 ----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp ----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred ----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 11222333333345678999999953100 00 1223332321 22345667677654322 1
Q ss_pred H-hc---cCCccccCCCChHHHHHhhhhh
Q 038234 207 M-ME---STNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 207 ~-~~---~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
. .. -...+.+...+.++-.+++...
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHH
Confidence 1 11 1356788888888877777653
No 48
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.76 E-value=1.2e-05 Score=74.52 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=36.5
Q ss_pred CceecchhhHHHHHHHHhcC---CCC-----CCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSD---SSD-----QQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~---~~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|.+..++.+...+... ... .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999888877530 000 0112446789999999999999998764
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.75 E-value=1.4e-05 Score=83.78 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=81.8
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHH----H--HH----HHhcCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAK----A--II----AALGCETSN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~----~--i~----~~l~~~~~~ 144 (406)
..++||+.++..+.+.|... ...-+.|+|.+|+|||++|+.+++........ . ++ ..+......
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 46899999999999999753 24456899999999999999887643110000 0 00 000000011
Q ss_pred CCCHHH-HHHHHHhhccCcceeEEeeCCCCcCc------cCc---chhhhccCCCCCCcEEEEecCChHHHHHh------
Q 038234 145 LGSLQS-LVRCISESIEGKKYLVVLDDVWTDDY------TKW---EPFQRCSANGQCGNNILVTTHKKTVARMM------ 208 (406)
Q Consensus 145 ~~~~~~-~~~~l~~~l~~kr~LlVlDdvw~~~~------~~~---~~l~~~l~~~~~gs~IivTtR~~~v~~~~------ 208 (406)
....+. +...+......++.+|++|++...-. ... ..+...+. ..+..+|.+|.........
T Consensus 260 ~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHH
Confidence 122232 33333333345678999999954310 011 11222222 1244566666544332111
Q ss_pred -ccCCccccCCCChHHHHHhhhhh
Q 038234 209 -ESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 209 -~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
.....+.+.+.+.++..+++...
T Consensus 338 ~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 338 ARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp GGGEEEEECCCCCHHHHHHHHHHH
T ss_pred HhCceEEEcCCCCHHHHHHHHHHH
Confidence 11236889999999988888653
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.67 E-value=6.9e-05 Score=78.45 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=77.1
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCCh----------HHHH-HHHHHHhcCC--
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKD----------FRVA-KAIIAALGCE-- 141 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----------~~~~-~~i~~~l~~~-- 141 (406)
..++||+.+++.+...|.... ..-+.++|++|+|||++|+.+++... ..+. .++ +..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----g~~~~ 249 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----GTKYR 249 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----ccccc
Confidence 468999999999999997532 33478999999999999998876520 0000 000 000
Q ss_pred CCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH-------hccCCcc
Q 038234 142 TSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM-------MESTNFI 214 (406)
Q Consensus 142 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~-------~~~~~~~ 214 (406)
......... .+......++.+|++|.- . +..+.+...+.. ....+|.||........ ...-..+
T Consensus 250 G~~e~~l~~---~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 250 GEFEDRLKK---VMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp ---CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred chHHHHHHH---HHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 000112222 333333467889999922 1 222334333332 23456655554431111 1123568
Q ss_pred ccCCCChHHHHHhhhhhc
Q 038234 215 SIKELSTQECWSLFKQES 232 (406)
Q Consensus 215 ~l~~L~~~~a~~Lf~~~~ 232 (406)
.+...+.++...++....
T Consensus 321 ~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLR 338 (758)
T ss_dssp ECCCCCHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999887543
No 51
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.63 E-value=6.5e-06 Score=74.80 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=34.6
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899998888777765410000 0111233779999999999999998764
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.62 E-value=2.1e-05 Score=71.25 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=34.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|....+.++.+.+..-.. ....+.|+|.+|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 478999988888877654221 12357799999999999999998764
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.59 E-value=1.3e-05 Score=79.37 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=84.4
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
..++|.+..++++.+++...... +....+-+.|+|++|+|||+||+++++.....+..--...+..... ...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~-g~~ 282 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA-GES 282 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT-THH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc-chh
Confidence 45899999999988877532000 0123456899999999999999999875432000000000000000 111
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCc-----------cCcchhhhccC--CCCCCcEEEEecCChH-HHHHh----c
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDY-----------TKWEPFQRCSA--NGQCGNNILVTTHKKT-VARMM----E 209 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~--~~~~gs~IivTtR~~~-v~~~~----~ 209 (406)
...+...+.....+++.+|+||++..... .....+...+. ....+..||.||.... +...+ .
T Consensus 283 ~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 22333444555567788999999832110 01112333332 1223445555665542 11111 1
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-...+.+...+.++-.++|....
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHT
T ss_pred CceEEEeCCCCHHHHHHHHHHHH
Confidence 13467888888888888887644
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.58 E-value=2.9e-05 Score=72.01 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=36.8
Q ss_pred ceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 76 EICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++|.+..++.+...+.... .....+...+.++|++|+|||++|+.+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 47788888888877775421 001233568999999999999999988764
No 55
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.54 E-value=9e-05 Score=69.28 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=80.6
Q ss_pred CceecchhhHHHHHHHHhcC---C---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC-hHHHHHHHHHHhcCCC---C-
Q 038234 75 SEICGRDYKKNELLSKLLSD---S---SDQQKPIKMISIVGMGGIGKITLAQMAYNDK-DFRVAKAIIAALGCET---S- 143 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~~~i~~~l~~~~---~- 143 (406)
.+++|.+..++.|.+.+... . .....+.+.+.|+|++|+|||+||+++++.. ...+. .+.... .
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~-----~i~~~~l~~~~ 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF-----SISSSDLVSKW 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE-----EEECCSSCCSS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEE-----EEEhHHHHhhh
Confidence 56889998888887766310 0 0012335678999999999999999998754 11000 000000 0
Q ss_pred CCCCHHHHHHHHHhhccCcceeEEeeCCCCcCcc------C-----cchhhhccCC---CCCCcEEEEecCChH-----H
Q 038234 144 NLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYT------K-----WEPFQRCSAN---GQCGNNILVTTHKKT-----V 204 (406)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~------~-----~~~l~~~l~~---~~~gs~IivTtR~~~-----v 204 (406)
.......+...+...-..++.+|+||++...... . ...+...+.. ...+..||.||.... +
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 0112222333333333467889999999543110 0 0112222211 223445555554431 2
Q ss_pred HHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 205 ARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 205 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.. .-...+.+...+.++-..+|....
T Consensus 167 ~r--Rf~~~i~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 167 RR--RFEKRIYIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp HH--TCCEEEECCCCCHHHHHHHHHHHH
T ss_pred Hh--hcCeEEEeCCcCHHHHHHHHHHHH
Confidence 22 224567788888888888776643
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.52 E-value=2.7e-05 Score=73.95 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=78.7
Q ss_pred CceecchhhHHHHHHHHhcC---CCC---CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLLSD---SSD---QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~---~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.+++|.+..++.|.+.+... ... .....+.+.|+|++|+|||+||+.+++.....+..--...+... .....
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~--~~g~~ 161 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK--WVGEG 161 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS--STTHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc--ccchH
Confidence 46899999999988877420 000 01235678999999999999999997654210000000000000 00111
Q ss_pred HHHHH-HHHhhccCcceeEEeeCCCCcCc-----------cCcchhhhccCC----CCCCcEEEEecCChH-HHHHh--c
Q 038234 149 QSLVR-CISESIEGKKYLVVLDDVWTDDY-----------TKWEPFQRCSAN----GQCGNNILVTTHKKT-VARMM--E 209 (406)
Q Consensus 149 ~~~~~-~l~~~l~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~----~~~gs~IivTtR~~~-v~~~~--~ 209 (406)
..... .+......++.+|+||++..... .....+...+.. ...+..||.||.... +...+ .
T Consensus 162 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R 241 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRR 241 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhh
Confidence 22222 22222345678999999843210 001122222221 123445555665432 11111 1
Q ss_pred cCCccccCCCChHHHHHhhhhh
Q 038234 210 STNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
-...+.+...+.++...++...
T Consensus 242 f~~~i~i~~p~~~~r~~il~~~ 263 (357)
T 3d8b_A 242 LVKRLYIPLPEASARKQIVINL 263 (357)
T ss_dssp CCEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEeCCcCHHHHHHHHHHH
Confidence 1346677888888877777654
No 57
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=4.2e-05 Score=70.47 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=77.9
Q ss_pred CceecchhhHHHHHHHHhcCC------CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC---CCC
Q 038234 75 SEICGRDYKKNELLSKLLSDS------SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET---SNL 145 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~---~~~ 145 (406)
.+++|.+..++.+.+.+.... ..-....+.+.|+|++|+|||+||+.+++.....+. .+.... ...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~-----~i~~~~l~~~~~ 95 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL-----NISAASLTSKYV 95 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE-----EEESTTTSSSSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE-----EeeHHHHhhccc
Confidence 468999999999888763210 000123567899999999999999999875421000 000000 011
Q ss_pred CCHHHHH-HHHHhhccCcceeEEeeCCCCcCccC-------cc----hhhhc---cCCC--CCCcEEEEecCChH-----
Q 038234 146 GSLQSLV-RCISESIEGKKYLVVLDDVWTDDYTK-------WE----PFQRC---SANG--QCGNNILVTTHKKT----- 203 (406)
Q Consensus 146 ~~~~~~~-~~l~~~l~~kr~LlVlDdvw~~~~~~-------~~----~l~~~---l~~~--~~gs~IivTtR~~~----- 203 (406)
....... ..+......++.+|+||++....... -. .+... ++.. +.+..||.||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~ 175 (297)
T 3b9p_A 96 GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 175 (297)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHH
T ss_pred chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHH
Confidence 1222222 22333334577899999994321100 00 11111 1211 12445666666532
Q ss_pred HHHHhccCCccccCCCChHHHHHhhhhh
Q 038234 204 VARMMESTNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 204 v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
+... -...+.+...+.++...++...
T Consensus 176 l~~R--~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 176 ALRR--FTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp HHHH--CCEEEECCCCCHHHHHHHHHHH
T ss_pred HHhh--CCeEEEeCCcCHHHHHHHHHHH
Confidence 2221 2345667777777776666553
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.49 E-value=3.6e-05 Score=71.40 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=36.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|+...+.++.+.+..-. .....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 357899999999888876532 12335779999999999999999873
No 59
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.47 E-value=1.8e-05 Score=76.04 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=77.1
Q ss_pred CceecchhhHHHHHHHHhcCCC------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCC---CC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETS---NL 145 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~---~~ 145 (406)
.+++|.+..++.+.+.+..... .-....+.+.|+|.+|+|||+||+.+++.....+. .+..... ..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~-----~v~~~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF-----NISAASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE-----EECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE-----EeeHHHhhcccc
Confidence 4689999999999887732100 00123467899999999999999999765332000 0000000 00
Q ss_pred -CCHHHHHHHHHhhccCcceeEEeeCCCCcCc-------cCc----chhhhccC---C-CCCCcEEEEecCChH-HHHHh
Q 038234 146 -GSLQSLVRCISESIEGKKYLVVLDDVWTDDY-------TKW----EPFQRCSA---N-GQCGNNILVTTHKKT-VARMM 208 (406)
Q Consensus 146 -~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-------~~~----~~l~~~l~---~-~~~gs~IivTtR~~~-v~~~~ 208 (406)
.....+...+...-...+.+|+||++..... ... ..+...+. . ......||.||.... +-..+
T Consensus 190 g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 269 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAV 269 (389)
T ss_dssp --CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHH
Confidence 1112222222333344667999999943200 000 11111111 1 122344555565422 11111
Q ss_pred -cc-CCccccCCCChHHHHHhhhhhc
Q 038234 209 -ES-TNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 209 -~~-~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.. ...+.+...+.++-..++...+
T Consensus 270 ~~R~~~~i~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 270 LRRFIKRVYVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HcCcceEEEcCCcCHHHHHHHHHHHH
Confidence 11 3457788888888877776543
No 60
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.43 E-value=0.0003 Score=68.80 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=79.2
Q ss_pred CceecchhhHHHHHHHHhcC----C--CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC-hH--------HHHHHHHHHhc
Q 038234 75 SEICGRDYKKNELLSKLLSD----S--SDQQKPIKMISIVGMGGIGKITLAQMAYNDK-DF--------RVAKAIIAALG 139 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~--------~~~~~i~~~l~ 139 (406)
.+++|.+..++.|.+.+... . .....+.+.+.|+|++|+|||+||+++++.. .. .+.... .+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~---~g 210 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW---LG 210 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh---cc
Confidence 46889999888888876310 0 0002335678999999999999999998754 21 111100 00
Q ss_pred CCCCCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCcc-------Cc----chhhhccCC---CCCCcEEEEecCChHHH
Q 038234 140 CETSNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDYT-------KW----EPFQRCSAN---GQCGNNILVTTHKKTVA 205 (406)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-------~~----~~l~~~l~~---~~~gs~IivTtR~~~v~ 205 (406)
. .......+. ...-..++.+|+||++...... .. ..+...+.. ...+..||.||......
T Consensus 211 -~--~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~l 284 (444)
T 2zan_A 211 -E--SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 284 (444)
T ss_dssp ----CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGS
T ss_pred -h--HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcccc
Confidence 0 111222222 2222457789999999543110 01 112222222 23455666666553211
Q ss_pred -HH-h-ccCCccccCCCChHHHHHhhhhhc
Q 038234 206 -RM-M-ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 206 -~~-~-~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.. . .-...+.+...+.++-..+|....
T Consensus 285 d~al~rRf~~~i~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred CHHHHhhcceEEEeCCcCHHHHHHHHHHHH
Confidence 11 1 123466777777777777776643
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.27 E-value=0.00012 Score=67.49 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++.+.++|++|+|||+||+.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445688899999999999999998754
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00019 Score=68.43 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=81.3
Q ss_pred CceecchhhHHHHHHHHhcCC-C------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDS-S------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~-~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+.-.- . -+-.+.+-|.++|++|.|||.||+++++.....+..--...+.... ...+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~-vGes 226 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY-IGEG 226 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS-TTHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc-cchH
Confidence 356788888888776543210 0 0134467789999999999999999987643211100000000000 0011
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCc-----c---C------cchhhhccCC--CCCCcEEEEecCChHH-----HH
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDY-----T---K------WEPFQRCSAN--GQCGNNILVTTHKKTV-----AR 206 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~-----~---~------~~~l~~~l~~--~~~gs~IivTtR~~~v-----~~ 206 (406)
...+...+...-...+++|++|++..--. . . ...+...+.. ...+-.||.||...+. .+
T Consensus 227 e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllR 306 (405)
T 4b4t_J 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLR 306 (405)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHS
T ss_pred HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcC
Confidence 22233333333456789999999853210 0 0 1112222222 2234455666655422 11
Q ss_pred HhccCCccccCCCChHHHHHhhhh
Q 038234 207 MMESTNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 207 ~~~~~~~~~l~~L~~~~a~~Lf~~ 230 (406)
.-.-...+.+...+.++-.++|+.
T Consensus 307 pGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 307 PGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp TTSSCCEEECCCCCHHHHHHHHHH
T ss_pred CCcCceEEEcCCcCHHHHHHHHHH
Confidence 112267788888888877777764
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.17 E-value=7.8e-05 Score=78.03 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=79.1
Q ss_pred CceecchhhHHHHHHHHhcCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH---HHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLLSDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDF---RVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~~~i~~~l~~~~~~~~~~ 148 (406)
..++|.+..++.+...+..... ....+...+.++|++|+|||+||+.+++.... .+..-=...+.. ......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~--~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME--KHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS--SCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc--cccccc
Confidence 4688999988888887764221 01233457999999999999999988764210 000000000000 000011
Q ss_pred HHHHHHHHhhccCcceeEEeeCCCCcCccCcchhhhccCC-----------CCCCcEEEEecCC-----hHHH----HHh
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSAN-----------GQCGNNILVTTHK-----KTVA----RMM 208 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-----------~~~gs~IivTtR~-----~~v~----~~~ 208 (406)
..+...++. ....+|+||++...+....+.+...+.. ...+..||+||.. ..+. ...
T Consensus 569 ~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f 645 (758)
T 3pxi_A 569 GQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAF 645 (758)
T ss_dssp --CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHS
T ss_pred chhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhC
Confidence 112222222 2345899999966554444555544432 1234578888873 1111 111
Q ss_pred -----cc-CCccccCCCChHHHHHhhhh
Q 038234 209 -----ES-TNFISIKELSTQECWSLFKQ 230 (406)
Q Consensus 209 -----~~-~~~~~l~~L~~~~a~~Lf~~ 230 (406)
.. ..++.+.+++.++-..++..
T Consensus 646 ~p~l~~Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 646 RPEFINRIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp CHHHHTTSSEEEECC--CHHHHHHHHHH
T ss_pred CHHHHhhCCeEEecCCCCHHHHHHHHHH
Confidence 11 35778888888877766654
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=8.6e-05 Score=61.08 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 65
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.09 E-value=0.00016 Score=67.01 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 82 YKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 82 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++.+.+++.... ......+.|+|++|+|||+||.++++..
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34445556665432 1124678899999999999999887654
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.01 E-value=0.00011 Score=72.09 Aligned_cols=156 Identities=11% Similarity=0.050 Sum_probs=78.6
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.+++|.++.++++.+.+..-... +....+-+.|+|++|+|||+||+.+++.....+..--...+... ......
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~~~ 94 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGA 94 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-HhcccH
Confidence 45889988777666554311000 01123448899999999999999998643210000000000000 000112
Q ss_pred HHHHHHHHhhccCcceeEEeeCCCCcCcc--------------CcchhhhccCC--CCCCcEEEEecCChHHHH-H-hcc
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVWTDDYT--------------KWEPFQRCSAN--GQCGNNILVTTHKKTVAR-M-MES 210 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw~~~~~--------------~~~~l~~~l~~--~~~gs~IivTtR~~~v~~-~-~~~ 210 (406)
..+...+.....+.+.+|+||++..-... ....+...+.. ...+..||.||...+... . ...
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~ 174 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRP 174 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGST
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhccc
Confidence 22333444555577899999999442110 11222222211 123556666776654322 1 111
Q ss_pred ---CCccccCCCChHHHHHhhhhh
Q 038234 211 ---TNFISIKELSTQECWSLFKQE 231 (406)
Q Consensus 211 ---~~~~~l~~L~~~~a~~Lf~~~ 231 (406)
...+.+...+.++-.+++...
T Consensus 175 gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 175 GRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHH
T ss_pred CcceeEeecCCCCHHHHHHHHHHH
Confidence 336778888877766776543
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.0008 Score=67.44 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=73.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH----------HHHHHHHHHhcCCCCCC
Q 038234 76 EICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF----------RVAKAIIAALGCETSNL 145 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~~i~~~l~~~~~~~ 145 (406)
+++|.+.-...+.+.+.-..-...-+...+.++|++|+||||||+.++..... .....+..... ... .
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~-~~i-g 159 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR-TYV-G 159 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHH-HHh-c
Confidence 46787776666644332110000124568999999999999999998764321 00000000000 000 0
Q ss_pred CCHHHHHHHHHhhccCcceeEEeeCCCCcCcc----CcchhhhccCCCC---------------CCcEEEEecCCh----
Q 038234 146 GSLQSLVRCISESIEGKKYLVVLDDVWTDDYT----KWEPFQRCSANGQ---------------CGNNILVTTHKK---- 202 (406)
Q Consensus 146 ~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~IivTtR~~---- 202 (406)
.....+...+....... -+++||++...... ....+...+.... ....||.||...
T Consensus 160 ~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~ 238 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIP 238 (543)
T ss_dssp ----CHHHHHHTTCSSS-EEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSC
T ss_pred cCchHHHHHHHHhhccC-CEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCC
Confidence 00111222223322233 38889998654322 1233444432111 234566666543
Q ss_pred -HHHHHhccCCccccCCCChHHHHHhhhhhc
Q 038234 203 -TVARMMESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 203 -~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
.+... ..++.+.+++.++-..++....
T Consensus 239 ~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 239 GPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred HHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 22222 3578999999998877776643
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.90 E-value=0.00031 Score=67.00 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999987654
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.83 E-value=0.00091 Score=69.58 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=84.8
Q ss_pred CceecchhhHHHHHHHHh----cCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLL----SDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+. ... .-+-..++-|.++|++|+|||+||+++++.....+..--...+.... ....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~-~ges 282 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL-AGES 282 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC-TTHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc-chHH
Confidence 357788888887777642 110 01234577899999999999999999998865411100000111111 1122
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcC------ccCc-----chhhhccCC--CCCCcEEEEecCChH-HHHHhc----
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDD------YTKW-----EPFQRCSAN--GQCGNNILVTTHKKT-VARMME---- 209 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~------~~~~-----~~l~~~l~~--~~~gs~IivTtR~~~-v~~~~~---- 209 (406)
...+...+.......+.+|+||++..-- .... ..+...+.. ...+..||.||...+ +-..+.
T Consensus 283 e~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GR 362 (806)
T 3cf2_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcc
Confidence 3334445555566789999999984311 0011 111111111 112334555555432 211111
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-...+++...+.++-.++|....
T Consensus 363 Fd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 363 FDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCEEEECCCCCHHHHHHHHHHTC
T ss_pred cceEEecCCCCHHHHHHHHHHHh
Confidence 14567888888888777776543
No 70
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.00018 Score=69.72 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred CceecchhhHHHHHHHHhcCC-C------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDS-S------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~-~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+.-.- . -+-.+.+-|.++|++|+|||.||+++++.....+..--...+.. .-...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s--k~~Ge 258 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD--KYIGE 258 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC--SSSSH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc--ccchH
Confidence 356788888877766553210 0 01345678999999999999999999876432111000000000 00111
Q ss_pred -HHHHHHHHHhhccCcceeEEeeCCCC
Q 038234 148 -LQSLVRCISESIEGKKYLVVLDDVWT 173 (406)
Q Consensus 148 -~~~~~~~l~~~l~~kr~LlVlDdvw~ 173 (406)
...+.......-...+++|++|++..
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccc
Confidence 22222333333456789999999953
No 71
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.78 E-value=0.0015 Score=56.30 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
|++.++++.+.+.... .....+|+|+|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567788888887542 34568999999999999999988754
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.78 E-value=0.00056 Score=72.50 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=37.0
Q ss_pred ceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 76 EICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++|.+..++.+...+.... .+.+.+...+.|+|++|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47899998888877775321 101234568899999999999999988764
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.77 E-value=0.00029 Score=73.71 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=37.0
Q ss_pred CceecchhhHHHHHHHHhcCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDS---SDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|.+..++.+...+.... ...+.+...+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 457899888888877665321 001234567999999999999999988764
No 74
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00019 Score=69.37 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=54.7
Q ss_pred CceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+...-. -+-...+-+.++|++|+|||.||+++++.....+..--...+.... ....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~-~Ge~ 250 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY-LGEG 250 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS-CSHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc-cchh
Confidence 3567888888887775532100 0134567799999999999999999987543211000000000000 0111
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCC
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
...+...+...-...+++|++|++.
T Consensus 251 e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 251 PRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred HHHHHHHHHHHHHcCCCeeechhhh
Confidence 2223333333445678999999984
No 75
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.00016 Score=69.89 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=53.7
Q ss_pred CceecchhhHHHHHHHHhc----CC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLS----DS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+.. .. .-+-...+-|.++|++|.|||.||+++++.....+..--...+... -...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~--~vGe 258 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM--YIGE 258 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS--CSSH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc--ccch
Confidence 3577888888888765421 10 0013456789999999999999999998764321100000001000 1111
Q ss_pred HHHHHH-HHHhhccCcceeEEeeCCC
Q 038234 148 LQSLVR-CISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 148 ~~~~~~-~l~~~l~~kr~LlVlDdvw 172 (406)
....++ .+...-...+++|++|++.
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchh
Confidence 222222 2222334568999999984
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.70 E-value=0.00035 Score=68.50 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=52.2
Q ss_pred CceecchhhHHHHHH---HHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChH--HHHHHHHHHhcCCCCCCCCHH
Q 038234 75 SEICGRDYKKNELLS---KLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDF--RVAKAIIAALGCETSNLGSLQ 149 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~---~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~~~i~~~l~~~~~~~~~~~ 149 (406)
..++|.+..++.+.. ++... ..+.+-+.++|++|+|||+||+.+++.... .+..--...+. .......+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~----~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~--~~~~~~~~ 110 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSK----KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY--STEIKKTE 110 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT----CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC--CSSSCHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH--HHhhhhhH
Confidence 568999988775544 34332 223456889999999999999988765321 00000000000 01112223
Q ss_pred HHHHHHHhh---ccCcceeEEeeCCC
Q 038234 150 SLVRCISES---IEGKKYLVVLDDVW 172 (406)
Q Consensus 150 ~~~~~l~~~---l~~kr~LlVlDdvw 172 (406)
.+...+... -..++.+|++|++.
T Consensus 111 ~~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 111 VLMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhhcCCcEEEEechh
Confidence 344444444 34567899999984
No 77
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.69 E-value=0.00044 Score=63.84 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhc-CC--CCCCCCHHHHHHHHHhhccCcceeEEeeCCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALG-CE--TSNLGSLQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~-~~--~~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
.+++.|+|++|+|||+||.++...... ..++..+. .+ .....+.+.....+.+.+...+ +||+|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~---~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGG---KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLK 192 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHT---TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCC---CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccc
Confidence 457789999999999999988753000 00000110 00 0001345666666666666556 99999994
No 78
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00037 Score=67.46 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=54.3
Q ss_pred ceecchhhHHHHHHHHhc----CC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 76 EICGRDYKKNELLSKLLS----DS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
++.|.++.+++|.+.+.- .. .-+-...+-|.++|++|+|||.||+++++.....+..--...+.... ...+.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~-vGese 288 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY-VGEGA 288 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS-SSHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc-CCHHH
Confidence 577888888888765421 00 00134577899999999999999999987543211100000011000 00112
Q ss_pred HHHHHHHHhhccCcceeEEeeCCC
Q 038234 149 QSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 149 ~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
..+...+...-...+++|++|++.
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCT
T ss_pred HHHHHHHHHHHhcCCceEeecccc
Confidence 223333333445678999999985
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.00034 Score=67.14 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=53.8
Q ss_pred CceecchhhHHHHHHHHhc---CCC----CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLS---DSS----DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~---~~~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.++.|.++.+++|.+.+.- ... -+-...+-|.++|++|.|||.||+++++.....+..--...+.. .-..+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s--k~vGe 259 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ--KYLGD 259 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC--SSSSH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh--ccCch
Confidence 3566888888777765432 100 01345678999999999999999999876432111000000000 01112
Q ss_pred HHHHH-HHHHhhccCcceeEEeeCCC
Q 038234 148 LQSLV-RCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 148 ~~~~~-~~l~~~l~~kr~LlVlDdvw 172 (406)
.+..+ ..+...-...+++|++|++.
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhh
Confidence 22222 22333334678999999985
No 80
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.31 E-value=0.0031 Score=54.58 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-+++|.+.+... .++..+|+|+|..|.|||||++.+...
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555665532 245779999999999999999887543
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.0017 Score=68.19 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=80.7
Q ss_pred CceecchhhHHHHHHHHhcC----C---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCC
Q 038234 75 SEICGRDYKKNELLSKLLSD----S---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGS 147 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~ 147 (406)
.+++|.+..+++|.+++... . .-+-.....|.|+|++|+||||||+.++......+..--...+..... ...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~-g~~ 282 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA-GES 282 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST-THH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh-hhH
Confidence 46899999888888877530 0 001234557999999999999999999876432100000001111100 011
Q ss_pred HHHHHHHHHhhccCcceeEEeeCCCCcCcc-----------CcchhhhccCC--CCCCcEEEEecCChH-HHHHhc----
Q 038234 148 LQSLVRCISESIEGKKYLVVLDDVWTDDYT-----------KWEPFQRCSAN--GQCGNNILVTTHKKT-VARMME---- 209 (406)
Q Consensus 148 ~~~~~~~l~~~l~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~~--~~~gs~IivTtR~~~-v~~~~~---- 209 (406)
...+...++......+.++++|++...-.. ....+...+.. ...+..+|.||.... +-..+.
T Consensus 283 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 283 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccc
Confidence 122333344444456789999998422100 00112222221 122345555655532 111111
Q ss_pred cCCccccCCCChHHHHHhhhhhc
Q 038234 210 STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 210 ~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
-...+.+...+.++-.+++...+
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccccccCCCCHHHHHHHHHHHH
Confidence 12446777778888777776543
No 82
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.14 E-value=0.0035 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 35789999999999999999997753
No 83
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.10 E-value=0.0026 Score=52.94 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=18.7
Q ss_pred EEEEEeeeCCCcHHHHHHHH
Q 038234 103 KMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v 122 (406)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 84
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.09 E-value=0.0025 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998764
No 85
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.06 E-value=0.017 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.193 Sum_probs=21.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...++.|+|.+|+|||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 86
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.04 E-value=0.0038 Score=58.17 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=35.3
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|++..++.+...+... .-+.++|.+|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999998888887642 24789999999999999998764
No 87
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.03 E-value=0.0042 Score=56.87 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....+|+|+|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999999999877554
No 88
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.00 E-value=0.003 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999987654
No 89
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.97 E-value=0.0037 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999887
No 90
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.96 E-value=0.0053 Score=54.93 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=50.7
Q ss_pred CceecchhhHHHHHHHHh---cCCC---CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC----CC
Q 038234 75 SEICGRDYKKNELLSKLL---SDSS---DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET----SN 144 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~----~~ 144 (406)
.+++|.+..++++.+.+. .... -+....+-+.|+|++|+||||||+.+++.....+ ..+.... ..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~-----~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF-----FTISGSDFVEMFV 86 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE-----EEECSCSSTTSCC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE-----EEEeHHHHHHHhh
Confidence 468898887776655432 1100 0011234588999999999999999876422100 0011100 00
Q ss_pred CCCHHHHHHHHHhhccCcceeEEeeCCC
Q 038234 145 LGSLQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 145 ~~~~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
......+...+.......+.++++|++.
T Consensus 87 ~~~~~~~~~~~~~a~~~~~~il~iDeid 114 (257)
T 1lv7_A 87 GVGASRVRDMFEQAKKAAPCIIFIDEID 114 (257)
T ss_dssp CCCHHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred hhhHHHHHHHHHHHHHcCCeeehhhhhh
Confidence 1122333344444444567899999983
No 91
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.95 E-value=0.0034 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|+|++|+||||+|+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999998754
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.89 E-value=0.0025 Score=55.90 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH--------------HHHHHHHHHhcCCCC--CCCCHHHHHHHHHhhccCcc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF--------------RVAKAIIAALGCETS--NLGSLQSLVRCISESIEGKK 163 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr 163 (406)
.+..++.|+|..|+||||++..+..+... +....+...++.... ......++...+.+.+.+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 34678999999999999999766654432 100011111211111 11234556666666655555
Q ss_pred e-eEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 164 Y-LVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 164 ~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
+ +||+|.+..-+.+..+.+.. +.+ .|..||+|-+..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 5 99999996543333233322 222 267899998853
No 93
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.88 E-value=0.0058 Score=57.78 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=36.0
Q ss_pred ceecchhhHHHHHHHHhc-------CC--CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 76 EICGRDYKKNELLSKLLS-------DS--SDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 76 ~~vGR~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|.+..++.+...+.. .. .........+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 468988888888777720 00 0001234578999999999999999998754
No 94
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.88 E-value=0.0034 Score=58.73 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=74.5
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRC 154 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 154 (406)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++.....+ .... ........++...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~-----~~~s--g~~~~~~~~l~~~ 96 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI-----HVTS--GPVLVKQGDMAAI 96 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE-----EEEE--TTTCCSHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE-----EEEe--chHhcCHHHHHHH
Confidence 4578887777776665542100 012345789999999999999999876421000 0000 1111122233222
Q ss_pred HHhhccCcceeEEeeCCCCcCccCcchhhhccCCC--------C----------CCcEE-EEecCChHHHHHhcc--CCc
Q 038234 155 ISESIEGKKYLVVLDDVWTDDYTKWEPFQRCSANG--------Q----------CGNNI-LVTTHKKTVARMMES--TNF 213 (406)
Q Consensus 155 l~~~l~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~----------~gs~I-ivTtR~~~v~~~~~~--~~~ 213 (406)
+.. + .++-++++|++..-.....+.+...+... + ....+ -.|++...+...+.. ...
T Consensus 97 ~~~-~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 97 LTS-L-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp HHH-C-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred HHH-c-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce
Confidence 222 2 24457888988543221122222111110 0 01122 235554333222211 235
Q ss_pred cccCCCChHHHHHhhhhhc
Q 038234 214 ISIKELSTQECWSLFKQES 232 (406)
Q Consensus 214 ~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.+++.+.++-..++.+.+
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHH
Confidence 7899999999999988765
No 95
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.83 E-value=0.0047 Score=57.24 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHH
Q 038234 100 KPIKMISIVGMGGIGKITLAQMA 122 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v 122 (406)
++.+||+|.|-|||||||.+..+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 45899999999999999987544
No 96
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.83 E-value=0.0051 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.|+|++|.|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999887654
No 97
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.82 E-value=0.0053 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988654
No 98
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.79 E-value=0.0088 Score=55.46 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 79 GRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
|-...+..+...+..... .....+|+|.|..|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333445555555554422 45677999999999999999987743
No 99
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0047 Score=52.15 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998765
No 100
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.78 E-value=0.007 Score=59.72 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=36.0
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.++|++..++.+...+... .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 34789998888888877653 257899999999999999998754
No 101
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.77 E-value=0.0087 Score=54.69 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34445555443321 1345678999999999999999998754
No 102
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.74 E-value=0.0055 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999887643
No 103
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.74 E-value=0.0064 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+++|+|++|+||||+++.+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998765
No 104
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.70 E-value=0.01 Score=55.61 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHH
Q 038234 78 CGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRV 130 (406)
Q Consensus 78 vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~ 130 (406)
|+-+.-.+++++.+..... .+....|.|+|++|+||||+++.++......+
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3445556666666643321 33456789999999999999999987765444
No 105
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.69 E-value=0.0039 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 106
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.68 E-value=0.0057 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999987654
No 107
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.67 E-value=0.016 Score=49.38 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=31.1
Q ss_pred HHHhhccCcce-eEEeeCCCC---cCccCcchhhhccCCCCCCcEEEEecCCh
Q 038234 154 CISESIEGKKY-LVVLDDVWT---DDYTKWEPFQRCSANGQCGNNILVTTHKK 202 (406)
Q Consensus 154 ~l~~~l~~kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 202 (406)
..++.+...+| |||||++-- -.....+.+...+........||+|+|+.
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34455554554 999999821 12233445556665556677999999985
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.66 E-value=0.0049 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+.|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 109
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0074 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999998876
No 110
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.62 E-value=0.011 Score=52.96 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+.+++.+..... ......+|.|+|++|+||||+|+.+....
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34445555554322 23456789999999999999999886543
No 111
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.60 E-value=0.0087 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....+|+|+|++|+||||+|+.+....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999988764
No 112
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.59 E-value=0.0057 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|+|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988653
No 113
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.55 E-value=0.0051 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988654
No 114
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.54 E-value=0.0079 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..+|+|+|..|+|||||++.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999887653
No 115
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.54 E-value=0.0088 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 44678999999999999999988654
No 116
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.53 E-value=0.007 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999988754
No 117
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.0069 Score=54.09 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=22.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999988663
No 118
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.52 E-value=0.006 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=20.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.51 E-value=0.021 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..+++++|.+|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999877653
No 120
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.50 E-value=0.013 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+|.|.|++|+||+|.|+.+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999887654
No 121
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.49 E-value=0.0072 Score=62.89 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=58.1
Q ss_pred CCCceecchhhHHHHHHHHhcCCC-------CCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 038234 73 DESEICGRDYKKNELLSKLLSDSS-------DQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNL 145 (406)
Q Consensus 73 ~~~~~vGR~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~ 145 (406)
.-.++.|.++..++|.+.+.-... .+-...+-+.++|++|.|||.||+++++.....+..--...+..... -
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v-G 553 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF-G 553 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC-S
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc-c
Confidence 334567888777777766542211 01234556889999999999999999988754211111111111111 1
Q ss_pred CCHHHHHHHHHhhccCcceeEEeeCCC
Q 038234 146 GSLQSLVRCISESIEGKKYLVVLDDVW 172 (406)
Q Consensus 146 ~~~~~~~~~l~~~l~~kr~LlVlDdvw 172 (406)
.+...+...+...-...+++|+||++.
T Consensus 554 ese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 554 ESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp SCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred hHHHHHHHHHHHHHHcCCceeechhhh
Confidence 223344444444445678999999984
No 122
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.48 E-value=0.0075 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999887654
No 123
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.48 E-value=0.0082 Score=51.48 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999887643
No 124
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.48 E-value=0.0057 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999987654
No 125
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.46 E-value=0.0068 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=19.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
...+++|+|+.|+|||||++..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999644
No 126
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.45 E-value=0.0075 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988754
No 127
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.45 E-value=0.0076 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.44 E-value=0.0072 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|.|+|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998876
No 129
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.43 E-value=0.0067 Score=50.35 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|+|.|++|+||||+|+.+.+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998764
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.41 E-value=0.0062 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++|.|+|++|+||||+|+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 131
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.39 E-value=0.007 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999988663
No 132
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.38 E-value=0.0079 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|.|+|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999988654
No 133
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.38 E-value=0.0084 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999988764
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.36 E-value=0.035 Score=51.09 Aligned_cols=43 Identities=28% Similarity=0.270 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCC--CCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSD--QQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-.++|.+.|....+- ......++.|+|.+|+||||++..++..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 445555555432210 1245789999999999999999877653
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.34 E-value=0.0092 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999864
No 136
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.33 E-value=0.0094 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...|.|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 137
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.29 E-value=0.0075 Score=56.42 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=32.2
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|.+..+..+...+.... ..-+.|+|.+|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 358898876655544443221 2238899999999999999987643
No 138
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.29 E-value=0.0086 Score=53.44 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=32.1
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+++|.+..+.++.+....-... +-...+-+.|+|++|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46788877665554433210000 00111228999999999999999998653
No 139
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.29 E-value=0.0097 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988653
No 140
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.28 E-value=0.0066 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.|.|++|+||||+|+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.28 E-value=0.0092 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=21.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|.|.|++|+||||+|+.+.+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33568999999999999999988764
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.28 E-value=0.016 Score=54.41 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=45.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhcc-C
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESIE-G 161 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~-~ 161 (406)
+...++.|+|.+|+||||||.+++..... .+....+..++.... ...+.+++...+...+. .
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 44679999999999999999887654211 111123444443321 23455666655555543 4
Q ss_pred cceeEEeeCCC
Q 038234 162 KKYLVVLDDVW 172 (406)
Q Consensus 162 kr~LlVlDdvw 172 (406)
+.-++|+|.+.
T Consensus 139 ~~dlvVIDSi~ 149 (356)
T 3hr8_A 139 VVDLIVVDSVA 149 (356)
T ss_dssp CCSEEEEECTT
T ss_pred CCCeEEehHhh
Confidence 56699999883
No 143
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.25 E-value=0.0094 Score=51.16 Aligned_cols=22 Identities=45% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999876
No 144
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.22 E-value=0.009 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|++|+||||+|+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988764
No 145
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.22 E-value=0.011 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.22 E-value=0.0063 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 147
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.21 E-value=0.014 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 148
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.21 E-value=0.013 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 149
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.20 E-value=0.0091 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988764
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.18 E-value=0.0078 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999887643
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.16 E-value=0.0096 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+|+|+|++|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999887643
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.16 E-value=0.01 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998876543
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.15 E-value=0.012 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|+|+|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999887653
No 154
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.14 E-value=0.026 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987654
No 155
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.11 E-value=0.035 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 558999999999999999988764
No 156
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.11 E-value=0.0084 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+.++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999988754
No 157
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.08 E-value=0.018 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....|+|+|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999987754
No 158
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.08 E-value=0.01 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 159
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.08 E-value=0.008 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 160
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.07 E-value=0.012 Score=50.87 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988653
No 161
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.06 E-value=0.0067 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=17.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988654
No 162
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.05 E-value=0.01 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988663
No 163
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.03 E-value=0.011 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++++|+|..|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987654
No 164
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.00 E-value=0.012 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999988654
No 165
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.97 E-value=0.0092 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.|.|+|++|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999887654
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.97 E-value=0.012 Score=50.49 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999887643
No 167
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.97 E-value=0.012 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
..+|+|+|+.|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 168
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.96 E-value=0.015 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4577999999999999999987754
No 169
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.96 E-value=0.015 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|+|+|+.|+||||+|+.+.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999988765
No 170
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.96 E-value=0.018 Score=49.45 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-+..+..++.. -+..+.+.|+|++|+|||++|..+++.
T Consensus 44 f~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 35566666653 222446899999999999999887653
No 171
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.93 E-value=0.0086 Score=51.71 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhc
Q 038234 104 MISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999988654
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.89 E-value=0.015 Score=50.66 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
-...++|.|.|++|+||+|.|+.+.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 35578999999999999999998887654
No 173
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.88 E-value=0.016 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987755
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.88 E-value=0.015 Score=49.74 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987764
No 175
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.88 E-value=0.018 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999998863
No 176
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.84 E-value=0.013 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999987643
No 177
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.83 E-value=0.012 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988764
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.83 E-value=0.014 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 55899999999999999988754
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.79 E-value=0.019 Score=49.70 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 80 RDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 80 R~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++..+.+.+.+.. ....+|+|+|.+|+|||||+..+..
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 33445555555432 3477999999999999999987654
No 180
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.77 E-value=0.026 Score=53.12 Aligned_cols=101 Identities=12% Similarity=0.166 Sum_probs=57.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHH---HH--hcCCC--------CCCCCHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAII---AA--LGCET--------SNLGSLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~---~~--l~~~~--------~~~~~~~~~~~~l~~~l~~kr~LlVl 168 (406)
..+++|+|+.|.|||||.+.+.......-...++ .. ..... ............+...|...+=+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 4499999999999999998876532210000000 00 00000 00011123445788888889999999
Q ss_pred eCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 169 DDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 169 Ddvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
|.+. +.+.+..+.... ..|..||+|+.....+..
T Consensus 203 DEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 203 GEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp SCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred CCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 9994 333444433332 235568999988776644
No 181
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.73 E-value=0.013 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999988754
No 182
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.72 E-value=0.017 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+|.|.|+.|+||||+++.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999886643
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.72 E-value=0.016 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|+|+.|+||||+++.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999854
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.70 E-value=0.031 Score=52.60 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
..++.+.+... .....+|+|+|.+|+|||||+..+.
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHH
Confidence 44555555432 3457899999999999999998775
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.70 E-value=0.017 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..+++|+|++|+|||||+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988653
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.69 E-value=0.016 Score=50.55 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+...+++|+|+.|+|||||.+.+...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34569999999999999999887653
No 187
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.65 E-value=0.014 Score=50.88 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988764
No 188
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.62 E-value=0.022 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
++..+++|+|+.|.|||||.+.++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3466999999999999999988643
No 189
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.60 E-value=0.016 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.58 E-value=0.017 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988664
No 191
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.56 E-value=0.021 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 192
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.56 E-value=0.023 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988754
No 193
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.03 Score=47.14 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.....|+|+|.+|+|||||...+....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999998887654
No 194
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.52 E-value=0.015 Score=52.61 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=31.4
Q ss_pred CceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++.|.++.+++|.+.+...-.. +-...+-+.|+|++|+||||||+.++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 45677777777666543210000 00111229999999999999999987643
No 195
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.52 E-value=0.018 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999886644
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.46 E-value=0.02 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+.-.+++|+|++|+|||||++.++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998754
No 197
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.45 E-value=0.032 Score=52.70 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=42.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhcc-Cc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESIE-GK 162 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~-~k 162 (406)
...++.|.|.+|+||||||.++...... .+.......++.... ...+.+++...+..... ++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 3558899999999999999777543211 011112333433211 22355666666655544 34
Q ss_pred ceeEEeeCCC
Q 038234 163 KYLVVLDDVW 172 (406)
Q Consensus 163 r~LlVlDdvw 172 (406)
.-+||+|.+.
T Consensus 153 ~~lVVIDsl~ 162 (366)
T 1xp8_A 153 IDVVVVDSVA 162 (366)
T ss_dssp CSEEEEECTT
T ss_pred CCEEEEeChH
Confidence 5699999884
No 198
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.35 E-value=0.023 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....++|+|+|-||+||||+|..++.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 45678999999999999999876543
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.35 E-value=0.068 Score=51.55 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+..+|.++|.+|+||||++..++.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999877764
No 200
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.35 E-value=0.052 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+..+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987653
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.32 E-value=0.21 Score=46.44 Aligned_cols=128 Identities=4% Similarity=-0.107 Sum_probs=80.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-ccCcceeEEeeCCCC-cCccCc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSLQSLVRCISES-IEGKKYLVVLDDVWT-DDYTKW 179 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdvw~-~~~~~~ 179 (406)
.++..++|..|.||++.+..+.+..... ..-...........+..++...+... +-+++-++|+|++.. .+...+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~ 94 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQ---GFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAIN 94 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHH---TCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhC---CCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHH
Confidence 5588999999999999998775532110 00000000011235566666655433 456777899999865 444566
Q ss_pred chhhhccCCCCCCcEEEEecCC-------hHHHHHhc-cCCccccCCCChHHHHHhhhhhc
Q 038234 180 EPFQRCSANGQCGNNILVTTHK-------KTVARMME-STNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 180 ~~l~~~l~~~~~gs~IivTtR~-------~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
+.+...+....+++.+|+++.. ..+...+. ...+++..+++.++....+.+.+
T Consensus 95 ~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 95 EQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp HHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 7777777665567777765532 24555443 35678999999998887776655
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.30 E-value=0.019 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+..+++|+|+.|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999875
No 203
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.29 E-value=0.026 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..+++|+|+.|+||||+++.++..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999887543
No 204
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.28 E-value=0.065 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..++|+|.+|+|||||+..+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 36899999999999999877554
No 205
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.23 E-value=0.022 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998764
No 206
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.22 E-value=0.051 Score=52.57 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCCC---CCCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 83 KKNELLSKLLSDSSD---QQKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
-.+++.+.|...... ...+.++|.++|.+|+||||++..++
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345666666432110 12457899999999999999987665
No 207
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.19 E-value=0.032 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.++|.|+|+.|+||||||..+++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998764
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.18 E-value=0.04 Score=49.08 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.....++.+.|.||+|||||+..+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHH
Confidence 3446788999999999999998764
No 209
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.13 E-value=0.015 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+++|+|..|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999887543
No 210
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.12 E-value=0.022 Score=51.58 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=32.8
Q ss_pred CceecchhhHHHHHHHHhcCCCC------CCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD------QQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+++|.+..+.++.+....-... +-...+-+.|+|++|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 56889887666665443211000 00111228999999999999999988653
No 211
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.10 E-value=0.014 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.09 E-value=0.054 Score=49.82 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=41.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCCh-------H-------HHHHHHHHHhcCCCC-----CCCCHHHH-HHHHHh---hcc
Q 038234 104 MISIVGMGGIGKITLAQMAYNDKD-------F-------RVAKAIIAALGCETS-----NLGSLQSL-VRCISE---SIE 160 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~~-------~-------~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~---~l~ 160 (406)
++-|.|.+|+|||||+.+++.... + .+....+..++.... ...+.+++ ...+.. .-+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 789999999999999866543221 0 122233555554432 12345554 333222 234
Q ss_pred CcceeEEeeCCCC
Q 038234 161 GKKYLVVLDDVWT 173 (406)
Q Consensus 161 ~kr~LlVlDdvw~ 173 (406)
++.-|||+|-+..
T Consensus 110 ~~~~lvVIDSI~a 122 (333)
T 3io5_A 110 GEKVVVFIDSLGN 122 (333)
T ss_dssp TCCEEEEEECSTT
T ss_pred cCceEEEEecccc
Confidence 6778999998843
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.09 E-value=0.031 Score=51.97 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++..+++|+|+.|+||||++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999887643
No 214
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.03 E-value=0.019 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 215
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.027 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=21.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887653
No 216
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.00 E-value=0.028 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.94 E-value=0.028 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999887654
No 218
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.94 E-value=0.025 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999887643
No 219
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.92 E-value=0.056 Score=54.52 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..+++|+|+.|.|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35689999999999999999887654
No 220
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.91 E-value=0.026 Score=54.36 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999987653
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.88 E-value=0.029 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.5
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988754
No 222
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.88 E-value=0.03 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998863
No 223
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.87 E-value=0.03 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999987654
No 224
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.85 E-value=0.03 Score=49.57 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999987654
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.85 E-value=0.071 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999876653
No 226
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.84 E-value=0.057 Score=52.20 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=35.0
Q ss_pred CceecchhhHHHHHHHHhcC--------CCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSD--------SSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|.+..++.+...+... .-......+-+.++|++|+|||++|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 45788888777776655221 00001234568899999999999999887643
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.83 E-value=0.029 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999988754
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.80 E-value=0.035 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
.++|.|+|+.|+||||||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999887653
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.79 E-value=0.033 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|+|||||.+.+..-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999987654
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.79 E-value=0.041 Score=54.22 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=75.8
Q ss_pred CceecchhhHHHHHHHHh---cCC---CCCCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCCH
Q 038234 75 SEICGRDYKKNELLSKLL---SDS---SDQQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCETSNLGSL 148 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~~~~~~~ 148 (406)
.+++|.+..+.++.+... ... .-+-...+-+.|+|++|+|||+||+.++......+. .+........-.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i-----~i~g~~~~~~~~ 105 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-----TASGSDFVEMFV 105 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE-----EEEGGGGTSSCT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-----EEehhHHHHhhh
Confidence 568898887666655432 110 000111233899999999999999999865321000 000000000001
Q ss_pred HHHHHHHHhhc----cCcceeEEeeCCCCcCc----------cC----cchhhhccCCC--CCCcEEEEecCChHHHHH-
Q 038234 149 QSLVRCISESI----EGKKYLVVLDDVWTDDY----------TK----WEPFQRCSANG--QCGNNILVTTHKKTVARM- 207 (406)
Q Consensus 149 ~~~~~~l~~~l----~~kr~LlVlDdvw~~~~----------~~----~~~l~~~l~~~--~~gs~IivTtR~~~v~~~- 207 (406)
......+...+ ...+.++++|++..... .. ...+...+... ..+..|+.||........
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 11122222222 23458999999943211 00 11222223222 223455666666544221
Q ss_pred -h---ccCCccccCCCChHHHHHhhhhhc
Q 038234 208 -M---ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 208 -~---~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
. .-...+.+...+.++-.+++...+
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHH
Confidence 1 114567888888887777776543
No 231
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.76 E-value=0.037 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+..+++|+|..|+|||||+..++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999887543
No 232
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.73 E-value=0.016 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=18.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999887664
No 233
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.72 E-value=0.043 Score=55.59 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=35.7
Q ss_pred CceecchhhHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 46889888888877777642 378999999999999999997754
No 234
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.71 E-value=0.034 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|.|+|+.|+||||||..+++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999887754
No 235
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.67 E-value=0.039 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999987654
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.67 E-value=0.046 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.67 E-value=0.034 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|.|||||.+.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999887654
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.66 E-value=0.068 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+++|+|..|+|||||++.+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 45779999999999999999887643
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.65 E-value=0.032 Score=46.77 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998875
No 240
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.63 E-value=0.036 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|.+|+|||||+..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999988763
No 241
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.62 E-value=0.044 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..|.|+|.+|+|||||...+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999887654
No 242
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.59 E-value=0.05 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999987765
No 243
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.59 E-value=0.039 Score=48.42 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=22.5
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+..+|+|.|..|+|||||++.+...
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345679999999999999999887543
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.58 E-value=0.036 Score=48.79 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....+|+|.|+.|+||||+++.+...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345668999999999999999988763
No 245
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.58 E-value=0.042 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|..|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999988654
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.58 E-value=0.041 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+.|.|.|.+|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999887655
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.56 E-value=0.045 Score=50.20 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...++|.|+|+.|+||||||..+++..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 345789999999999999999887654
No 248
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.56 E-value=0.11 Score=45.50 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....++|.|++|+||||+|+.+.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999887654
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.56 E-value=0.038 Score=48.53 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...++.|+|.+|+|||||+..++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356899999999999999988764
No 250
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.54 E-value=0.037 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|+|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 558999999999999999987654
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.49 E-value=0.041 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...+++|.|.+|+|||||+..++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999987654
No 252
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.40 E-value=0.047 Score=48.93 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=17.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHh
Q 038234 103 KMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~ 123 (406)
++|+|.|-||+||||+|..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA 22 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLT 22 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHH
Confidence 578889999999999986654
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.37 E-value=0.14 Score=47.72 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..++.|.|.+|+||||||..++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3568999999999999999877653
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.35 E-value=0.042 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|+.|.|||||.+.+..-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3558999999999999999987654
No 255
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.35 E-value=0.033 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+++|+|+.|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999988754
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.32 E-value=0.05 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|+|.|++|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999887654
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.32 E-value=0.041 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|+|||||.+.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999988654
No 258
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.31 E-value=0.053 Score=52.40 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999777654
No 259
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.28 E-value=0.052 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=19.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++|+|.|.||+||||+|..++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46888899999999999876643
No 260
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.27 E-value=0.063 Score=44.12 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.--|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568999999999999999887653
No 261
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.25 E-value=0.044 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887654
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.24 E-value=0.046 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..++.|+|.+|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999988753
No 263
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.22 E-value=0.047 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987653
No 264
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.21 E-value=0.044 Score=50.29 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
++..+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456899999999999999987653
No 265
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.20 E-value=0.044 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999988654
No 266
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.20 E-value=0.045 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999988654
No 267
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.20 E-value=0.046 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999987654
No 268
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.19 E-value=0.051 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999877543
No 269
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.18 E-value=0.056 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988654
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.15 E-value=0.045 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987654
No 271
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.054 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999887654
No 272
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.15 E-value=0.074 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999998874
No 273
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.15 E-value=0.061 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988764
No 274
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.14 E-value=0.046 Score=49.34 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=21.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|.|||||.+.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5589999999999999999886543
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.13 E-value=0.048 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987653
No 276
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.13 E-value=0.043 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999888654
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.12 E-value=0.056 Score=48.49 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=52.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHH------HHhcCCCCC--CC-----CHHHHHHHHHhhccCcceeEEe
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDFRVAKAII------AALGCETSN--LG-----SLQSLVRCISESIEGKKYLVVL 168 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~------~~l~~~~~~--~~-----~~~~~~~~l~~~l~~kr~LlVl 168 (406)
..+++|+|+.|+|||||.+.+...........+. ..+...... .. +...+...+...|..++=+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 5689999999999999998876532210000000 000000000 00 0112344566666667778999
Q ss_pred eCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 169 DDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 169 Ddvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
|... +......+.... ..|.-|++||.+..+...
T Consensus 105 DEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~ 138 (261)
T 2eyu_A 105 GEMR--DLETVETALRAA---ETGHLVFGTLHTNTAIDT 138 (261)
T ss_dssp SCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHHH
T ss_pred CCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHHH
Confidence 9884 322222222221 236678888887665443
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.12 E-value=0.045 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999987654
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.10 E-value=0.041 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988654
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.09 E-value=0.1 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
...++|+|+|.+|+||||++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998777
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.04 E-value=0.047 Score=48.53 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||.+.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988654
No 282
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.02 E-value=0.09 Score=47.11 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 85 NELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 85 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-+..+|... .++...+.++|++|+|||.+|.++++.
T Consensus 91 ~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3356666542 133457999999999999999988763
No 283
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.02 E-value=0.041 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 447899999999999999987654
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.98 E-value=0.048 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...++.|.|.+|+||||||.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999977643
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.97 E-value=0.064 Score=44.26 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999888654
No 286
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.96 E-value=0.051 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999988654
No 287
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.90 E-value=0.072 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999987653
No 288
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.89 E-value=0.054 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988654
No 289
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.84 E-value=0.15 Score=46.34 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
++++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455555555432211344668999999999999999988754
No 290
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.80 E-value=0.074 Score=44.41 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988765
No 291
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.80 E-value=0.052 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999888654
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.79 E-value=0.064 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|+|.|+.|+||||||..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 358999999999999999888754
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.78 E-value=0.055 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999886543
No 294
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.75 E-value=0.25 Score=47.59 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=43.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCChH-------HHHHHHHHHhcCC---CCCCCCHHHHHHHHHhhccCc---cee
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDKDF-------RVAKAIIAALGCE---TSNLGSLQSLVRCISESIEGK---KYL 165 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~l~~k---r~L 165 (406)
....++..|.|.+|.||||+..+.++.... ....++-..+... ..........-..+.+....+ -=+
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~ 237 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKR 237 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCTTTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSE
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhccCCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCE
Confidence 466889999999999999999988764221 4445555555422 111122222222333322211 348
Q ss_pred EEeeCCCCc
Q 038234 166 VVLDDVWTD 174 (406)
Q Consensus 166 lVlDdvw~~ 174 (406)
||+|++.-.
T Consensus 238 liiDE~sm~ 246 (446)
T 3vkw_A 238 LFIDEGLML 246 (446)
T ss_dssp EEEETGGGS
T ss_pred EEEeCcccC
Confidence 999998433
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.74 E-value=0.057 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988654
No 296
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.73 E-value=0.062 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999988654
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.065 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888764
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.67 E-value=0.057 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999988654
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.65 E-value=0.08 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 300
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.64 E-value=0.085 Score=44.17 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999998887653
No 301
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.63 E-value=0.07 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.4
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999888765
No 302
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.60 E-value=0.041 Score=49.29 Aligned_cols=27 Identities=33% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+...|+|.|..|+||||+|+.+.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999998876654
No 303
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.56 E-value=0.086 Score=43.49 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999887655
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.55 E-value=0.088 Score=42.69 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999887654
No 305
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.54 E-value=0.063 Score=43.88 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999887654
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.52 E-value=0.062 Score=43.70 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999887653
No 307
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.52 E-value=0.069 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEeeeCCCcHHHHHHHHhcCC
Q 038234 104 MISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999887643
No 308
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.50 E-value=0.093 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998765
No 309
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.50 E-value=0.07 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.....|.|+|.+|+|||||...+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999998887653
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.48 E-value=0.069 Score=49.38 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3789999999999999999887643
No 311
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.46 E-value=0.098 Score=43.08 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999888765
No 312
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.46 E-value=0.092 Score=44.94 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.2
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+.+..+|+|+|++|+||+++|..+.+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHH
Confidence 34678999999999999999987655
No 313
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.44 E-value=0.067 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...++.|+|.+|+|||||+..++.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988753
No 314
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.44 E-value=0.067 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999887654
No 315
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.43 E-value=0.13 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
....+|+|+|.+|+|||||+..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999999998875
No 316
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.43 E-value=0.065 Score=43.48 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999877653
No 317
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.39 E-value=0.056 Score=49.69 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..+++|+|..|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35689999999999999999987654
No 318
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.39 E-value=0.075 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..+++|+|+.|.|||||++.+..-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35689999999999999999887654
No 319
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.37 E-value=0.065 Score=43.66 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887654
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.34 E-value=0.08 Score=44.23 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=18.2
Q ss_pred EEEEeeeCCCcHHHHHHHHh
Q 038234 104 MISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~ 123 (406)
+.+|+|..|.|||||+.+++
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998864
No 321
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.34 E-value=0.043 Score=55.42 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred CceecchhhHHHHHHHHhcCCCC--CC---CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 75 SEICGRDYKKNELLSKLLSDSSD--QQ---KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 75 ~~~vGR~~~~~~l~~~L~~~~~~--~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.++|.+..+..+.-.|...... .+ ....-|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56788877655554444322100 00 001147899999999999999998764
No 322
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.33 E-value=0.087 Score=43.96 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999887654
No 323
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.31 E-value=0.11 Score=47.55 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=25.9
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
.+++|.+.+. -.+++++|..|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 4677777664 2378999999999999999886
No 324
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.30 E-value=0.068 Score=44.13 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+..--|+|+|.+|+|||||...+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999887653
No 325
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.29 E-value=0.089 Score=43.43 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=21.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999887654
No 326
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.28 E-value=0.068 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=19.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999776544
No 327
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.27 E-value=0.071 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=19.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999766544
No 328
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.27 E-value=0.089 Score=44.30 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
......|+|+|.+|+|||||...+....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999987764
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.23 E-value=0.076 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+++|+|..|.|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35589999999999999999887653
No 330
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.19 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999999988754
No 331
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.20 E-value=0.086 Score=44.61 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4468999999999999998776653
No 332
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.18 E-value=0.14 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
....+++|+|.+|+|||||...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4477999999999999999988763
No 333
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.18 E-value=0.079 Score=52.56 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...+|.++|++|.||||+|+.+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999986543
No 334
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.16 E-value=0.075 Score=43.77 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999887654
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.15 E-value=0.1 Score=43.21 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.1
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999887654
No 336
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.13 E-value=0.076 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456899999999999999887654
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.12 E-value=0.075 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=19.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999998754
No 338
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.08 E-value=0.057 Score=46.12 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999998887653
No 339
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.06 E-value=0.066 Score=59.27 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
+...++|+|..|.|||||++.+...+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 356899999999999999999987654
No 340
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.03 E-value=0.079 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999888754
No 341
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.02 E-value=0.064 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+++|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999887654
No 342
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.00 E-value=0.074 Score=43.17 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.9
Q ss_pred EEEeeeCCCcHHHHHHHHhc
Q 038234 105 ISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~ 124 (406)
|+|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999988754
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.00 E-value=0.08 Score=43.11 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999887653
No 344
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.99 E-value=0.11 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988765
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.98 E-value=0.081 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999888654
No 346
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.98 E-value=0.085 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|.|+|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456899999999999999887654
No 347
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.97 E-value=0.11 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345899999999999999887654
No 348
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.97 E-value=0.095 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+..+|+|+|.+|+|||||...+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3477999999999999999988764
No 349
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.82 E-value=0.091 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-.|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999887643
No 350
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.80 E-value=0.1 Score=51.42 Aligned_cols=25 Identities=8% Similarity=-0.100 Sum_probs=21.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.+.|++|+||||+|+.+.+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4578999999999999999987554
No 351
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.79 E-value=0.084 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=17.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
-.|.+.|.||+||||+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3478899999999999866544
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.79 E-value=0.092 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999887643
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.78 E-value=0.095 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999988763
No 354
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.77 E-value=0.073 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++++|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987653
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.74 E-value=0.11 Score=42.81 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999888654
No 356
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.69 E-value=0.13 Score=42.70 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=21.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...-.|.|+|.+|+|||||...+...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34556899999999999999887643
No 357
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.69 E-value=0.09 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446899999999999999887654
No 358
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.66 E-value=0.074 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999887643
No 359
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.66 E-value=0.09 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999987763
No 360
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.66 E-value=0.12 Score=42.18 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888654
No 361
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.63 E-value=0.084 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+..++.|.|.+|+|||+||.+++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999998764
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.62 E-value=0.092 Score=43.57 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999888754
No 363
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.62 E-value=0.11 Score=43.18 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999988765
No 364
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.59 E-value=0.09 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999887654
No 365
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.56 E-value=0.1 Score=43.90 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999888654
No 366
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.55 E-value=0.091 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887654
No 367
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.54 E-value=0.1 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999888654
No 368
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.54 E-value=0.092 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999887654
No 369
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.53 E-value=0.083 Score=49.53 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=42.4
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhcc-C
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESIE-G 161 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~-~ 161 (406)
+...++.|+|.+|+||||||.++...... .+.......++.... ...+.+++...+..... .
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 34668999999999999999877643211 011112333432211 12345555555544443 4
Q ss_pred cceeEEeeCCC
Q 038234 162 KKYLVVLDDVW 172 (406)
Q Consensus 162 kr~LlVlDdvw 172 (406)
+.-+||+|.+.
T Consensus 139 ~~~lIVIDsl~ 149 (349)
T 2zr9_A 139 ALDIIVIDSVA 149 (349)
T ss_dssp CCSEEEEECGG
T ss_pred CCCEEEEcChH
Confidence 56799999884
No 370
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.53 E-value=0.095 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999887654
No 371
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.52 E-value=0.13 Score=43.51 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557899999999999999887654
No 372
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.50 E-value=0.23 Score=44.32 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.++.+.+... ......|+|+|.+|+|||||...+...
T Consensus 22 l~~~~~~~~~~----~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQK----DMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHT----TCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhc----cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444444432 234567899999999999999888764
No 373
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.50 E-value=0.099 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...++|+|..|.|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999887543
No 374
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.49 E-value=0.49 Score=45.88 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 86 ELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 86 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.++.|..-. .-..++|.|.+|+|||+|+..+.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~ 176 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINN 176 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHh
Confidence 4566665432 3457899999999999999777653
No 375
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.46 E-value=0.12 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567899999999999999887654
No 376
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.45 E-value=0.1 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 557899999999999999887754
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.44 E-value=0.12 Score=43.12 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999887654
No 378
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.43 E-value=0.1 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.7
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3499999999999999997754
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.43 E-value=0.1 Score=44.61 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999887654
No 380
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.43 E-value=0.12 Score=44.09 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999877643
No 381
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.1 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999887654
No 382
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.39 E-value=0.098 Score=44.31 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=20.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..-.|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999988753
No 383
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.39 E-value=0.076 Score=46.72 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=16.2
Q ss_pred EEEeeeCCCcHHHHHHHHh
Q 038234 105 ISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~ 123 (406)
|+|.|-||+||||+|..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA 21 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLI 21 (254)
T ss_dssp EEEECSSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 6679999999999997664
No 384
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.38 E-value=0.15 Score=46.60 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 83 KKNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 83 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.++++...+. ..+++|+|++|+|||||.+.+....
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4667777664 2378999999999999999987654
No 385
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.37 E-value=0.1 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.086 Sum_probs=18.3
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.++.|+|..|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999965543
No 386
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.37 E-value=0.11 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+..++.++|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999877654
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.36 E-value=0.14 Score=45.00 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999887653
No 388
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.35 E-value=0.11 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988755
No 389
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.32 E-value=0.1 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...|+|||..|.|||||++.+.+-+.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCcc
Confidence 45799999999999999999988654
No 390
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.32 E-value=0.11 Score=44.29 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=17.5
Q ss_pred EEEEEe-eeCCCcHHHHHHHHhc
Q 038234 103 KMISIV-GMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~-G~gGiGKTtLA~~v~~ 124 (406)
++|+|+ +.||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 578887 6789999999977643
No 391
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.30 E-value=0.11 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+|.++|++|+||||+++.+.+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999988764
No 392
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.30 E-value=0.24 Score=44.36 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=21.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....|+++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999998887653
No 393
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.30 E-value=0.2 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.2
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....+|.|.|++|+||||+|+.+.+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988665
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.29 E-value=0.14 Score=42.63 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-+-|.|.|.+|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356889999999999999887543
No 395
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.28 E-value=0.11 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999887653
No 396
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.28 E-value=0.15 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988754
No 397
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.25 E-value=0.12 Score=42.74 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.9
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999887644
No 398
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.25 E-value=0.13 Score=44.90 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.....|.|.|..|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999876543
No 399
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.25 E-value=0.12 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 99 QKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 99 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.++...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999888754
No 400
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.20 E-value=0.14 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCcEEEEEee-eCCCcHHHHHHHHh
Q 038234 99 QKPIKMISIVG-MGGIGKITLAQMAY 123 (406)
Q Consensus 99 ~~~~~vi~I~G-~gGiGKTtLA~~v~ 123 (406)
....++|+|+| -||+||||+|..++
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA 165 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACA 165 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHH
Confidence 45678999886 89999999997754
No 401
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.20 E-value=0.12 Score=44.51 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999888764
No 402
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.19 E-value=0.1 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999887654
No 403
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.19 E-value=0.14 Score=42.52 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999988765
No 404
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.16 E-value=0.11 Score=43.70 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.--|+|+|.+|+|||||...+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhc
Confidence 34689999999999999988764
No 405
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.16 E-value=0.14 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.0
Q ss_pred CcEEEEEee-eCCCcHHHHHHHHh
Q 038234 101 PIKMISIVG-MGGIGKITLAQMAY 123 (406)
Q Consensus 101 ~~~vi~I~G-~gGiGKTtLA~~v~ 123 (406)
..++|+|++ -||+||||+|..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA 26 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFA 26 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHH
Confidence 357888875 68999999997753
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.16 E-value=0.15 Score=42.90 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988654
No 407
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.14 E-value=0.11 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999888654
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.14 E-value=0.13 Score=43.94 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999887654
No 409
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.12 E-value=0.11 Score=43.60 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999887654
No 410
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.11 E-value=0.12 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 458999999999999999988764
No 411
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.10 E-value=0.11 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999988754
No 412
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.10 E-value=0.12 Score=44.26 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCChH
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDKDF 128 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 128 (406)
..+|+|.|+.|+||||+|+.+++....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 358999999999999999999876543
No 413
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.10 E-value=0.11 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999887643
No 414
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.09 E-value=0.11 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|..|+|||||.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 558999999999999999998874
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.08 E-value=0.12 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999988764
No 416
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.08 E-value=0.12 Score=48.84 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=52.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHH------HH-HhcCCC---CC---CCCHHHHHHHHHhhccCcceeEE
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAI------IA-ALGCET---SN---LGSLQSLVRCISESIEGKKYLVV 167 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i------~~-~l~~~~---~~---~~~~~~~~~~l~~~l~~kr~LlV 167 (406)
+..+++|+|+.|+|||||++.+...........+ .+ .+.... .. ..+...+...+...+...+=+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 3568999999999999999887653221000000 00 000000 00 00111223455666666777888
Q ss_pred eeCCCCcCccCcchhhhccCCCCCCcEEEEecCChHHHHH
Q 038234 168 LDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHKKTVARM 207 (406)
Q Consensus 168 lDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v~~~ 207 (406)
+|.+. +......+.... ..|..|+.|+....+...
T Consensus 215 ldE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 215 VGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp ESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCSHHHH
T ss_pred ECCCC--CHHHHHHHHHHH---hcCCEEEEEECcchHHHH
Confidence 99884 222222222222 235567778777654443
No 417
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.16 Score=42.74 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999887653
No 418
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.07 E-value=0.12 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.7
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|+.|.|||||.+.+..-.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4589999999999999999987643
No 419
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.05 E-value=0.16 Score=42.68 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888765
No 420
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.02 E-value=0.12 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+..++.|.|.+|+||||||.+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3456899999999999999977753
No 421
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.00 E-value=0.11 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
-|.|+|.+|+|||+|...+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999877644
No 422
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.99 E-value=0.11 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999888754
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.97 E-value=0.11 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445789999999999999887654
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.96 E-value=0.12 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999887654
No 425
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.96 E-value=0.11 Score=43.85 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 445889999999999999998765
No 426
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.95 E-value=0.22 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|.|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999987643
No 427
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.92 E-value=0.099 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..++.|+|+.|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3578999999999999999987653
No 428
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.92 E-value=0.1 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEeeeCCCcHHHHHHHHhcC
Q 038234 104 MISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 104 vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999776543
No 429
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.91 E-value=0.14 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 558999999999999999988765
No 430
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.12 Score=43.28 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999888654
No 431
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.86 E-value=0.13 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 458999999999999999988764
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.86 E-value=0.18 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
...-|+|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999988764
No 433
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.13 Score=43.27 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446899999999999999888754
No 434
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.81 E-value=0.15 Score=47.72 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...++.|+|.+|+|||+||.+++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987654
No 435
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.80 E-value=0.13 Score=43.82 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999887754
No 436
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.78 E-value=0.29 Score=44.79 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 84 KNELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 84 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
++++.+.+..-... ......|+|+|.+|+|||||...+....
T Consensus 7 ~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 7 INKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp HHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 34455544322111 2456789999999999999999887653
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.75 E-value=0.1 Score=48.97 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=40.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhhc-cCc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCETS-----NLGSLQSLVRCISESI-EGK 162 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l-~~k 162 (406)
...++.|.|.+|+||||||.+++..... .+....+..++.... ...+.+++...+.... .++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 4568999999999999999877643211 001112333333211 1223445554444433 245
Q ss_pred ceeEEeeCCC
Q 038234 163 KYLVVLDDVW 172 (406)
Q Consensus 163 r~LlVlDdvw 172 (406)
.-+||+|.+.
T Consensus 142 ~~lVVIDsl~ 151 (356)
T 1u94_A 142 VDVIVVDSVA 151 (356)
T ss_dssp CSEEEEECGG
T ss_pred CCEEEEcCHH
Confidence 5699999873
No 438
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.74 E-value=0.15 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999887554
No 439
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.74 E-value=0.13 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+.-.++.|+|.+|+|||||+..++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 345699999999999999998653
No 440
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.72 E-value=0.14 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.0
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
...+++.+.|.||+||||+|..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA 39 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVA 39 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHH
Confidence 346789999999999999987654
No 441
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.69 E-value=0.11 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.++.-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 458999999999999999988764
No 442
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.68 E-value=0.14 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.--|+|+|.+|+|||||...+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 5568999999999999998886543
No 443
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.67 E-value=0.13 Score=43.96 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999887644
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.66 E-value=0.17 Score=42.35 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999887653
No 445
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.64 E-value=0.13 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 45899999999999999998865
No 446
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.62 E-value=0.15 Score=43.14 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999888654
No 447
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.55 E-value=0.13 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|.|||||++.+....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3489999999999999999886653
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.55 E-value=0.14 Score=43.39 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=20.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999887654
No 449
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.48 E-value=0.19 Score=44.71 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.2
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999888654
No 450
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.46 E-value=0.11 Score=43.64 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999888765
No 451
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.45 E-value=0.32 Score=47.07 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHhcCCCC-----CCCCcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 79 GRDYKKNELLSKLLSDSSD-----QQKPIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 79 GR~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|.++-++.+.+.+...... ..+....|+|+|.+|+|||||...+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 5566667776666532100 02345678999999999999999887653
No 452
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.44 E-value=0.14 Score=53.74 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=76.9
Q ss_pred CCceecchhhHHHHHHHHhcCCCC-------CCCCcEEEEEeeeCCCcHHHHHHHHhcCChHHHHHHHHHHhcCCC----
Q 038234 74 ESEICGRDYKKNELLSKLLSDSSD-------QQKPIKMISIVGMGGIGKITLAQMAYNDKDFRVAKAIIAALGCET---- 142 (406)
Q Consensus 74 ~~~~vGR~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~~i~~~l~~~~---- 142 (406)
-.+++|.+...+.+.+.+...... +-.....+.++|++|+|||+||+.+++.....+. .+....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i-----~v~~~~l~~~ 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI-----SIKGPELLTM 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC-----CCCCSSSTTC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE-----EEechHhhhh
Confidence 345778888888887766422100 1123456889999999999999998764321000 000000
Q ss_pred CCCCCHHHHHHHHHhhccCcceeEEeeCCCCcCc--------------cCcchhhhccCCC--CCCcEEEEecCChHH-H
Q 038234 143 SNLGSLQSLVRCISESIEGKKYLVVLDDVWTDDY--------------TKWEPFQRCSANG--QCGNNILVTTHKKTV-A 205 (406)
Q Consensus 143 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~~--~~gs~IivTtR~~~v-~ 205 (406)
........+...++..-...+.+|+||++..... .....+...+... ..+..||.||..... -
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 0001122233333333233467999999843100 0012233333221 123344555543321 1
Q ss_pred HHh----ccCCccccCCCChHHHHHhhhhhc
Q 038234 206 RMM----ESTNFISIKELSTQECWSLFKQES 232 (406)
Q Consensus 206 ~~~----~~~~~~~l~~L~~~~a~~Lf~~~~ 232 (406)
..+ .-...+.+...+.++-..+|+...
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 111 113566777778888888877644
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.42 E-value=0.15 Score=48.44 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..+++|+|+.|.|||||.+.+..-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 558999999999999999988753
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.42 E-value=0.15 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...++.|+|.+|+|||+||.+++.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467999999999999999987653
No 455
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.33 E-value=0.16 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.0
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.|.|++|+||||+|+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999888664
No 456
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.29 E-value=0.15 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999888754
No 457
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.28 E-value=0.15 Score=47.78 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=22.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCCh
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKD 127 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 127 (406)
...+++|+|..|+|||||.+.+.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356899999999999999998887543
No 458
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.26 E-value=0.098 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhc
Q 038234 102 IKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
..+++|+|+.|.|||||.+.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999998865
No 459
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.26 E-value=0.086 Score=43.79 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=10.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556899999999999999887644
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.25 E-value=0.12 Score=44.63 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35578999999999999999887653
No 461
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.20 E-value=0.13 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhc
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
+...++.|+|.+|+|||+||.+++.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHH
Confidence 3456899999999999999987753
No 462
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.14 E-value=0.16 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|.|.|..|+||||+++.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999887654
No 463
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.13 E-value=0.14 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.1
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999887654
No 464
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.98 E-value=0.31 Score=43.82 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEeee-CCCcHHHHHHHHh
Q 038234 82 YKKNELLSKLLSDSSDQQKPIKMISIVGM-GGIGKITLAQMAY 123 (406)
Q Consensus 82 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~-gGiGKTtLA~~v~ 123 (406)
+.+..|...|..... +.+.++|.|+|. ||+||||+|..++
T Consensus 64 Ea~r~lrt~l~~~~~--~~~~kvI~vts~kgG~GKTt~a~nLA 104 (271)
T 3bfv_A 64 EKFRGIRSNIMFANP--DSAVQSIVITSEAPGAGKSTIAANLA 104 (271)
T ss_dssp HHHHHHHHHHHHSST--TCCCCEEEEECSSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc--CCCCeEEEEECCCCCCcHHHHHHHHH
Confidence 345555554543221 345789999875 8999999998753
No 465
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.96 E-value=0.16 Score=43.72 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=15.5
Q ss_pred EEEEe-eeCCCcHHHHHHHHh
Q 038234 104 MISIV-GMGGIGKITLAQMAY 123 (406)
Q Consensus 104 vi~I~-G~gGiGKTtLA~~v~ 123 (406)
+|+|+ +.||+||||+|..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA 22 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLS 22 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHH
Confidence 56664 689999999997754
No 466
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.93 E-value=0.17 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.+++|+|.+|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 378999999999999999887543
No 467
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.90 E-value=0.21 Score=43.47 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=22.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999887653
No 468
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.85 E-value=0.092 Score=57.97 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.4
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+...++|+|..|.|||||++.+....
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999887654
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.78 E-value=0.2 Score=41.81 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=20.9
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3556899999999999999988654
No 470
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.78 E-value=0.18 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.6
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
...+++.+.|.||+||||+|..++
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA 37 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLA 37 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHH
Confidence 346788899999999999997654
No 471
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.69 E-value=0.13 Score=45.00 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.5
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999886553
No 472
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.67 E-value=0.19 Score=43.34 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=48.3
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCChH--------------HH-HHHHHHHhcCCCC--CCCCHHHHHHHHHhhccCcc
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDKDF--------------RV-AKAIIAALGCETS--NLGSLQSLVRCISESIEGKK 163 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------~~-~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~kr 163 (406)
...+..++|.-|.||||.+.....+... +. ...+...++.... ...+.. .+.+.+.++-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~~~~ 102 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHITEEM 102 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGG----GGGGGCCSSC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHhcCC
Confidence 3578899999999999988666554332 11 1123333322211 011111 2233333333
Q ss_pred eeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEecCC
Q 038234 164 YLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTTHK 201 (406)
Q Consensus 164 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 201 (406)
=+|++|.+..-+.+..+.+....+ .|-.||+|-++
T Consensus 103 dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 103 DVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp CEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred CEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 499999996654444444433222 26689999985
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.66 E-value=0.18 Score=42.26 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.|+|.+|+|||++|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999988754
No 474
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=89.50 E-value=0.25 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.6
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...+|.+.|++|+||||+|+.+.+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999888664
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.48 E-value=0.21 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.2
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
...|.+.|..|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999998876643
No 476
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.43 E-value=0.19 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.1
Q ss_pred cEEEEEee---eCCCcHHHHHHHHh
Q 038234 102 IKMISIVG---MGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G---~gGiGKTtLA~~v~ 123 (406)
.++|+|++ -||+||||+|..++
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA 58 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFA 58 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHH
Confidence 34667765 99999999997764
No 477
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.39 E-value=0.15 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..++|+|..|.|||||++.+....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999887654
No 478
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.34 E-value=0.17 Score=48.68 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.7
Q ss_pred EEEeeeCCCcHHHHHHHHhcC
Q 038234 105 ISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~ 125 (406)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998875
No 479
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.29 E-value=0.24 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999998764
No 480
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.26 E-value=0.2 Score=48.74 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=20.8
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+..++.|.|.+|+||||||..++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999876543
No 481
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.25 E-value=0.23 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.0
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988765
No 482
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.20 E-value=1.1 Score=39.24 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=47.5
Q ss_pred EEEeeeCCCcHHHHHHHHhcCChH---------HHHHHHHHHhcC---C-C-------CC-----CCCHHHHHHHHHhhc
Q 038234 105 ISIVGMGGIGKITLAQMAYNDKDF---------RVAKAIIAALGC---E-T-------SN-----LGSLQSLVRCISESI 159 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~~~---------~~~~~i~~~l~~---~-~-------~~-----~~~~~~~~~~l~~~l 159 (406)
+.|+|..|.|||.+|..+...... .+..+....+.. . . .. ....+.+..... .+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~-~~ 189 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE-KL 189 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHH-HH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHH-Hh
Confidence 778999999999999766544321 333333333221 1 0 00 011233333222 22
Q ss_pred cCcceeEEeeCCCCcCccCcchhhhccCCCCCCcEEEEec
Q 038234 160 EGKKYLVVLDDVWTDDYTKWEPFQRCSANGQCGNNILVTT 199 (406)
Q Consensus 160 ~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 199 (406)
.++--+||+|.++......+..+...++ ...++++|.
T Consensus 190 ~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 190 GNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp TTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred cccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3445699999997655445555555443 233455553
No 483
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.17 E-value=0.2 Score=44.32 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.4
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.-.|+|+|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999887654
No 484
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.17 E-value=0.19 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
.--|+|+|.+|+|||||...+...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999887654
No 485
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.15 E-value=0.26 Score=46.16 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
+...++.+.|.||+||||+|..++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA 47 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATG 47 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHH
Confidence 345666778999999999997753
No 486
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.15 E-value=0.2 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.4
Q ss_pred EEEeeeCCCcHHHHHHHHhcCC
Q 038234 105 ISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 105 i~I~G~gGiGKTtLA~~v~~~~ 126 (406)
|+|+|..|+|||||...++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999988653
No 487
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.11 E-value=0.25 Score=42.65 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.8
Q ss_pred EEEEEeee-CCCcHHHHHHHHh
Q 038234 103 KMISIVGM-GGIGKITLAQMAY 123 (406)
Q Consensus 103 ~vi~I~G~-gGiGKTtLA~~v~ 123 (406)
++|.|.|. ||+||||+|..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa 23 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 47888885 8999999997753
No 488
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.11 E-value=0.23 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=19.5
Q ss_pred CCCcEEEEEe-eeCCCcHHHHHHHHh
Q 038234 99 QKPIKMISIV-GMGGIGKITLAQMAY 123 (406)
Q Consensus 99 ~~~~~vi~I~-G~gGiGKTtLA~~v~ 123 (406)
....++|+|+ |-||+||||+|..++
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA 130 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLA 130 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHH
Confidence 3457788887 789999999886653
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.08 E-value=0.23 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999988765
No 490
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.01 E-value=0.27 Score=39.82 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.6
Q ss_pred cEEEEEeeeCCCcHHHHHHHHh
Q 038234 102 IKMISIVGMGGIGKITLAQMAY 123 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~ 123 (406)
..+.+|+|+.|.|||||..+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999987764
No 491
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.01 E-value=0.64 Score=45.25 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 86 ELLSKLLSDSSDQQKPIKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 86 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
+.++.|..-. .-..++|.|.+|+|||+|+..+.+.
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~ 188 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINN 188 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHH
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHH
Confidence 3466665542 3457899999999999999776653
No 492
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.00 E-value=0.22 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=21.7
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
+.++|+|+|.+|+|||||...+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46679999999999999999988663
No 493
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.96 E-value=0.24 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEeeeCCCcHHHHHHHHhc
Q 038234 103 KMISIVGMGGIGKITLAQMAYN 124 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~ 124 (406)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988765
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.90 E-value=0.23 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcC
Q 038234 103 KMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
..|.+.|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999887654
No 495
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.84 E-value=0.34 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.6
Q ss_pred CCcEEEEEeee-CCCcHHHHHHHHh
Q 038234 100 KPIKMISIVGM-GGIGKITLAQMAY 123 (406)
Q Consensus 100 ~~~~vi~I~G~-gGiGKTtLA~~v~ 123 (406)
.+.++|.|+|. ||+||||+|..++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA 126 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLA 126 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHH
Confidence 45679999985 8999999998753
No 496
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.82 E-value=0.26 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYND 125 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~ 125 (406)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999988764
No 497
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.81 E-value=0.21 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 103 KMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 103 ~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
--|+|+|.+|+|||||...++...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999877654
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.79 E-value=0.41 Score=54.53 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=43.1
Q ss_pred CCcEEEEEeeeCCCcHHHHHHHHhcCChH------------HHHHHHHHHhcCCC-----CCCCCHHHHHHHHHhhc-cC
Q 038234 100 KPIKMISIVGMGGIGKITLAQMAYNDKDF------------RVAKAIIAALGCET-----SNLGSLQSLVRCISESI-EG 161 (406)
Q Consensus 100 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l-~~ 161 (406)
++.+.+.|+|++|+|||+||.++...... .+....+..++.+. ......+.....++... ..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 44679999999999999999877543211 00111144444221 12233445555555543 35
Q ss_pred cceeEEeeCC
Q 038234 162 KKYLVVLDDV 171 (406)
Q Consensus 162 kr~LlVlDdv 171 (406)
+.-+||+|.+
T Consensus 1505 ~~~lVVIDsi 1514 (2050)
T 3cmu_A 1505 AVDVIVVDSV 1514 (2050)
T ss_dssp CCSEEEESCG
T ss_pred CCCEEEEcCh
Confidence 6789999998
No 499
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.74 E-value=0.21 Score=48.33 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred CcEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 101 PIKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 101 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
.-.+++|+|..|+|||||.+.+....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35689999999999999999887754
No 500
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.72 E-value=0.19 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.8
Q ss_pred cEEEEEeeeCCCcHHHHHHHHhcCC
Q 038234 102 IKMISIVGMGGIGKITLAQMAYNDK 126 (406)
Q Consensus 102 ~~vi~I~G~gGiGKTtLA~~v~~~~ 126 (406)
..+++|+|..|+|||||++.++.-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4589999999999999999887654
Done!