Query 038235
Match_columns 514
No_of_seqs 154 out of 197
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 40.9 11 0.00039 27.2 1.6 17 56-73 21-37 (41)
2 2qfa_C Inner centromere protei 35.8 26 0.0009 25.9 2.8 25 76-100 17-41 (47)
3 2wsc_J PSAJ, PSI-J, photosyste 23.8 20 0.00069 26.2 0.4 15 58-73 23-37 (44)
4 2grr_B RAN GTPase-activating p 22.8 27 0.00091 32.5 1.2 22 49-70 114-135 (170)
5 1s21_A ORF2; predominantly bet 15.0 43 0.0015 31.9 0.7 19 3-21 16-35 (206)
6 2k84_A P9; HOST-virus interact 12.6 60 0.0021 21.6 0.6 12 68-81 1-12 (30)
7 2ljw_A ALR2454 protein; novel 11.3 1E+02 0.0034 26.7 1.8 15 50-64 44-58 (110)
8 3bww_A Protein of unknown func 10.9 1.3E+02 0.0046 30.3 2.9 33 61-104 267-300 (307)
9 1s4k_A Putative cytoplasmic pr 10.5 1E+02 0.0035 27.0 1.7 17 59-76 63-90 (120)
10 3f40_A Uncharacterized NTF2-li 9.5 1.5E+02 0.005 24.4 2.2 20 77-96 11-30 (114)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=40.93 E-value=11 Score=27.16 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhccCCCch
Q 038235 56 YVSAIESIIERDYFPDLS 73 (514)
Q Consensus 56 Y~eaLs~II~RDFFPdL~ 73 (514)
.++++--.|.| ||||++
T Consensus 21 ~tAg~lIEiNR-ffPD~L 37 (41)
T 1jb0_J 21 ITAGILIEFNR-FYPDLL 37 (41)
T ss_dssp HHHHHHHHHHH-HSCCCS
T ss_pred HHHHHHHHHHH-hCcccc
Confidence 35666677888 999985
No 2
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=35.85 E-value=26 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHH
Q 038235 76 RDRYEWLQATRTGDPVQIRDAQLKI 100 (514)
Q Consensus 76 raQ~EYLdAles~D~~~ir~a~~k~ 100 (514)
+.-+|++.-++++|..|+.||+..-
T Consensus 17 ~Kl~eF~~~vdnk~mvWL~EIeeEA 41 (47)
T 2qfa_C 17 QKLMEFLCNMDNKDLVWLEEIQEEA 41 (47)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhHHHHHHHHHH
Confidence 4457999999999999999998764
No 3
>2wsc_J PSAJ, PSI-J, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_J* 2wsf_J* 2o01_J* 3lw5_J*
Probab=23.79 E-value=20 Score=26.24 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=10.2
Q ss_pred HHHHhhhhhccCCCch
Q 038235 58 SAIESIIERDYFPDLS 73 (514)
Q Consensus 58 eaLs~II~RDFFPdL~ 73 (514)
+++--.|.| ||||++
T Consensus 23 Ag~lIEiNR-fFPD~L 37 (44)
T 2wsc_J 23 AGLLIEINR-FFPDAL 37 (44)
T ss_dssp GGTTTSSTT-TSCCCS
T ss_pred HHHHHHHHH-hCchHh
Confidence 344444778 999985
No 4
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B 2gro_B 1z5s_C 3uip_C* 3uio_C 3uin_C* 2io2_C 2io3_C 2iy0_C 1kps_B
Probab=22.84 E-value=27 Score=32.52 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=18.5
Q ss_pred cccchhhHHHHHHhhhhhccCC
Q 038235 49 KVLDEDTYVSAIESIIERDYFP 70 (514)
Q Consensus 49 ~VLdED~Y~eaLs~II~RDFFP 70 (514)
.|-+=.--.-+|++||++||||
T Consensus 114 ~~~~l~G~~~aL~~avqq~yFp 135 (170)
T 2grr_B 114 AIANLYGPLMALNHMVQQDYFP 135 (170)
T ss_dssp CCSCCHHHHHHHHHHTTSTTSC
T ss_pred CCCCchHHHHHHHHHhcccccc
Confidence 3556666788999999999999
No 5
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=14.96 E-value=43 Score=31.86 Aligned_cols=19 Identities=37% Similarity=0.303 Sum_probs=2.3
Q ss_pred CCCCCCCCCCC-CCCCCCCC
Q 038235 3 LSPGNSPRHLA-SPSPSPSQ 21 (514)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~ 21 (514)
-||-|||||++ +++|+.+.
T Consensus 16 ysp~~sp~~~sg~~~~~~~~ 35 (206)
T 1s21_A 16 YSPPTSPVYGSGVSSPSRFV 35 (206)
T ss_dssp ---------------CCTTT
T ss_pred cCCCCCcccccCCCCccccc
Confidence 48999999997 45555443
No 6
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=12.60 E-value=60 Score=21.63 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=8.8
Q ss_pred cCCCchhhhhHHHH
Q 038235 68 YFPDLSKLRDRYEW 81 (514)
Q Consensus 68 FFPdL~klraQ~EY 81 (514)
.||||.+++ +||
T Consensus 1 LYPDLs~~k--qEY 12 (30)
T 2k84_A 1 LYPDLSEIK--KEY 12 (30)
T ss_dssp CCCCSCSSS--HHH
T ss_pred CCccHHHHH--HHH
Confidence 479998887 455
No 7
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=11.28 E-value=1e+02 Score=26.72 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.6
Q ss_pred ccchhhHHHHHHhhh
Q 038235 50 VLDEDTYVSAIESII 64 (514)
Q Consensus 50 VLdED~Y~eaLs~II 64 (514)
-|+|++|.+.|..|.
T Consensus 44 PltE~eY~~hL~~va 58 (110)
T 2ljw_A 44 PMNETEYQEHLDSVA 58 (110)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 499999999887775
No 8
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=10.91 E-value=1.3e+02 Score=30.25 Aligned_cols=33 Identities=33% Similarity=0.652 Sum_probs=21.4
Q ss_pred Hhhhhhcc-CCCchhhhhHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 038235 61 ESIIERDY-FPDLSKLRDRYEWLQATRTGDPVQIRDAQLKIMERR 104 (514)
Q Consensus 61 s~II~RDF-FPdL~klraQ~EYLdAles~D~~~ir~a~~k~~~r~ 104 (514)
--+||||| ||.+..|-++.+ ++++++.++...|
T Consensus 267 ptllErD~niP~~~~L~~E~~-----------~a~~~~~~~~~~~ 300 (307)
T 3bww_A 267 PTLLERDFNFPPFEKLCKEVD-----------IIHQLQQKYVKKR 300 (307)
T ss_dssp CEEECC---CCCHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHH-----------HHHHHHHHhhhhc
Confidence 34589999 899999987643 5666666665444
No 9
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=10.55 E-value=1e+02 Score=27.01 Aligned_cols=17 Identities=53% Similarity=1.112 Sum_probs=13.0
Q ss_pred HHHhhhh-----------hccCCCchhhh
Q 038235 59 AIESIIE-----------RDYFPDLSKLR 76 (514)
Q Consensus 59 aLs~II~-----------RDFFPdL~klr 76 (514)
.|+.||+ | |||||...+
T Consensus 63 ~i~~i~~kin~~ig~nt~r-~f~d~~af~ 90 (120)
T 1s4k_A 63 RINAIVDKINNRIGNNTMR-YFPDLSSFQ 90 (120)
T ss_dssp HHHHHHHHHTTSCSCCEEC-CCSSHHHHH
T ss_pred HHHHHHHHHhcccCCceee-ecCCHHHHH
Confidence 5677777 4 999998764
No 10
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=9.47 E-value=1.5e+02 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=15.8
Q ss_pred hHHHHHHHHhcCChHHHHHH
Q 038235 77 DRYEWLQATRTGDPVQIRDA 96 (514)
Q Consensus 77 aQ~EYLdAles~D~~~ir~a 96 (514)
.=..|++|+++||.+.+.++
T Consensus 11 ~v~~f~~A~~~gD~~~l~~l 30 (114)
T 3f40_A 11 LVLEFIHALNTENFPAAKKR 30 (114)
T ss_dssp HHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHh
Confidence 33579999999999887653
Done!