Query 038235
Match_columns 514
No_of_seqs 154 out of 197
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 15:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038235.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038235hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qgta_ a.62.1.1 (A:) Hepatiti 25.2 18 0.0013 29.7 2.6 38 63-100 18-62 (142)
2 d1jb0j_ f.23.18.1 (J:) Subunit 21.4 19 0.0014 24.2 1.6 16 57-73 22-37 (41)
3 d1x4oa1 a.217.1.1 (A:8-72) Spl 21.1 20 0.0014 26.0 1.8 33 170-207 17-49 (65)
4 d2cyua1 a.9.1.1 (A:2-40) E3-bi 20.2 14 0.001 24.5 0.7 12 447-458 1-12 (39)
5 d2a0ba_ a.24.10.1 (A:) Aerobic 17.3 40 0.0029 26.0 3.1 52 49-101 5-62 (118)
6 d1z1sa1 d.17.4.10 (A:1-129) Un 14.6 43 0.0031 25.2 2.6 17 79-95 8-24 (129)
7 d2f86b1 d.17.4.7 (B:343-471) A 12.2 65 0.0047 23.8 3.0 22 75-96 12-33 (129)
8 d2r4ia1 d.17.4.15 (A:1-122) Un 11.8 66 0.0048 23.9 2.9 21 76-96 9-29 (122)
9 d1pufa_ a.4.1.1 (A:) Homeobox 10.9 2E+02 0.015 20.9 5.4 33 44-77 13-45 (77)
10 d2bnga1 d.17.4.8 (A:13-144) Un 10.0 88 0.0064 24.0 3.2 22 75-96 6-27 (132)
No 1
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B virus [TaxId: 10407]}
Probab=25.22 E-value=18 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred hhhhccCCCchhh--hhHHHHHHHHhcCC-----hHHHHHHHHHH
Q 038235 63 IIERDYFPDLSKL--RDRYEWLQATRTGD-----PVQIRDAQLKI 100 (514)
Q Consensus 63 II~RDFFPdL~kl--raQ~EYLdAles~D-----~~~ir~a~~k~ 100 (514)
..--||||.+..| .+-.-|-||+++-+ ...||++-..-
T Consensus 18 flp~dffpsvrdlldta~alyrealespehcsphHtAlRqailCW 62 (142)
T d1qgta_ 18 FLPSDFFPSVRDLLDTASALYREALESPEHCSPHHTALRQAILCW 62 (142)
T ss_dssp TSCGGGSCCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHH
T ss_pred hCchhhcchHHHHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHH
Confidence 4567999999988 45556889999887 34566665544
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=21.38 E-value=19 Score=24.21 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=10.3
Q ss_pred HHHHHhhhhhccCCCch
Q 038235 57 VSAIESIIERDYFPDLS 73 (514)
Q Consensus 57 ~eaLs~II~RDFFPdL~ 73 (514)
+++|---|.| ||||+.
T Consensus 22 tAG~lIEiNR-FfPD~L 37 (41)
T d1jb0j_ 22 TAGILIEFNR-FYPDLL 37 (41)
T ss_dssp HHHHHHHHHH-HSCCCS
T ss_pred HHHHHHHHHh-hCchhh
Confidence 4455444555 999985
No 3
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.13 E-value=20 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=23.4
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHHHHhhHHhhhcc
Q 038235 170 LDEFLRKHTSEDNDSFSKILEKVNRKRKERYQFLLEGE 207 (514)
Q Consensus 170 LD~F~akYTSEDNaSF~eIlek~n~KrreKyaWl~~~e 207 (514)
+..|.+++-. .|+++|- ++++..-+++|||+.+
T Consensus 17 tA~~Vak~G~----~fE~~l~-~k~~~np~F~FL~~~~ 49 (65)
T d1x4oa1 17 LARFIADGGP----EVETIAL-QNNRENQAFSFLYDPN 49 (65)
T ss_dssp HHHHHHHSCT----THHHHHH-HHHHHCSSTTTTTCSS
T ss_pred HHHHHHHccH----HHHHHHH-HhccCCCCceeecCCC
Confidence 5566666554 4999884 5666677999999643
No 4
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=20.18 E-value=14 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHH
Q 038235 447 LSPAAQKFMRNA 458 (514)
Q Consensus 447 LSPAAqRL~~k~ 458 (514)
|||+|++|+...
T Consensus 1 iSP~arkla~e~ 12 (39)
T d2cyua1 1 LSPAIRRLLAEH 12 (39)
T ss_dssp CCCTHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 799999999875
No 5
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=17.33 E-value=40 Score=26.02 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=37.7
Q ss_pred cccchhhHHHHHHhhhhhccCCCchhh--hhH----HHHHHHHhcCChHHHHHHHHHHH
Q 038235 49 KVLDEDTYVSAIESIIERDYFPDLSKL--RDR----YEWLQATRTGDPVQIRDAQLKIM 101 (514)
Q Consensus 49 ~VLdED~Y~eaLs~II~RDFFPdL~kl--raQ----~EYLdAles~D~~~ir~a~~k~~ 101 (514)
.|||.+ |++.|-..+-.|||-+|..+ +.- .+.-+|++.+|.+.++.+.-++.
T Consensus 5 ~~lD~~-~L~~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~LK 62 (118)
T d2a0ba_ 5 ALLDIP-MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIK 62 (118)
T ss_dssp HHSCHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCHH-HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467865 77788777778888776665 222 33455678899999999887774
No 6
>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.55 E-value=43 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChHHHHH
Q 038235 79 YEWLQATRTGDPVQIRD 95 (514)
Q Consensus 79 ~EYLdAles~D~~~ir~ 95 (514)
++|++|+++||.+.+.+
T Consensus 8 ~~~~~~~~~gD~~~~~~ 24 (129)
T d1z1sa1 8 VHSLRLLENGDARGWCD 24 (129)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 56999999999987764
No 7
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}
Probab=12.20 E-value=65 Score=23.76 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHhcCChHHHHHH
Q 038235 75 LRDRYEWLQATRTGDPVQIRDA 96 (514)
Q Consensus 75 lraQ~EYLdAles~D~~~ir~a 96 (514)
++.-++|.+|+..||.+.+...
T Consensus 12 ~~~~~~~~~A~~~~D~~~~~~~ 33 (129)
T d2f86b1 12 VRVTQTLLDAISCKDFETYTRL 33 (129)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHh
Confidence 3455679999999999988765
No 8
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}
Probab=11.80 E-value=66 Score=23.93 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhcCChHHHHHH
Q 038235 76 RDRYEWLQATRTGDPVQIRDA 96 (514)
Q Consensus 76 raQ~EYLdAles~D~~~ir~a 96 (514)
+..+.|++|+.++|.+.+.++
T Consensus 9 ~~~~~~~~A~~~~D~~~l~~l 29 (122)
T d2r4ia1 9 DCEKKLLTAIQNNDVESLEVL 29 (122)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhh
Confidence 556789999999999987654
No 9
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.91 E-value=2e+02 Score=20.86 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=25.1
Q ss_pred CCCCCcccchhhHHHHHHhhhhhccCCCchhhhh
Q 038235 44 PKKRAKVLDEDTYVSAIESIIERDYFPDLSKLRD 77 (514)
Q Consensus 44 ~~kk~~VLdED~Y~eaLs~II~RDFFPdL~klra 77 (514)
++++.+++.. +-++.|+..-+.+=||+....+.
T Consensus 13 ~rr~Rt~ft~-~Ql~~Le~~F~~~~yPs~~~r~~ 45 (77)
T d1pufa_ 13 TRKKRCPYTK-HQTLELEKEFLFNMYLTRDRRYE 45 (77)
T ss_dssp TSCCCCCCCH-HHHHHHHHHHHHCSSCCHHHHHH
T ss_pred CCCCCCCCCH-HHHHHHHHHHHHCCCCCHHHHHH
Confidence 3444555554 57999999999999999877653
No 10
>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.99 E-value=88 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHhcCChHHHHHH
Q 038235 75 LRDRYEWLQATRTGDPVQIRDA 96 (514)
Q Consensus 75 lraQ~EYLdAles~D~~~ir~a 96 (514)
++.=+.|++|++++|.+.|.+.
T Consensus 6 ~~~V~~f~~A~~~~D~d~~~~~ 27 (132)
T d2bnga1 6 IRAVEAFLNALQNEDFDTVDAA 27 (132)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHH
Confidence 3445789999999999988754
Done!