BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038237
(181 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 150/195 (76%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L IF +MK++DVIS+TAIV+G+ N Q+DIAR+ FDQMPERDYV WT MIDGYL+V
Sbjct: 240 MSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQV 299
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N F+EAL LF E+QTSN+ DEFT+VSILTA A LGALELGEW++TYIDKNKVKND + G
Sbjct: 300 NCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVG 359
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT MIVGLAI+G G++ALDMF QML+AS+
Sbjct: 360 NALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVT 419
Query: 166 PDEVAYVGVLSARTH 180
PDE+ YVGVL A TH
Sbjct: 420 PDEITYVGVLCACTH 434
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V A+++ Y D+AR FD + D V W MI Y R+ ++ + TLF E++
Sbjct: 122 NVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEME 181
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
++ T+VS+L+A + L LE G+ + YI + V++++ NALIDMY C
Sbjct: 182 KKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMS 241
Query: 131 -------TVK----FTWTTMIVGLAISGNGD----------------------------- 150
++K +WT ++ G A G D
Sbjct: 242 VALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNC 301
Query: 151 --KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M +++KPDE V +L+A
Sbjct: 302 FKEALVLFHEMQTSNVKPDEFTMVSILTA 330
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ ARQ FD +PE W TM+ GY R++ + ++++ ++ ++++ D +T ++
Sbjct: 38 MNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKG 97
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTW 136
A E G+ + ++ K + +++F NALI+MY C T TW
Sbjct: 98 FKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTW 157
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI DK +F +M + + P V V VLSA
Sbjct: 158 NAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSA 198
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REAL 67
KNK D A++ Y V+ AR F+ MP D WT MI G L +N + EAL
Sbjct: 349 KNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVG-LAINGYGEEAL 407
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
+F ++ +++ DE T V +L A + G ++ G
Sbjct: 408 DMFVQMLKASVTPDEITYVGVLCACTHTGMVDEG 441
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/189 (64%), Positives = 146/189 (77%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F MKN+DVIS+T+IV+G+ N Q+D+AR+ FDQ+PERDYV WT MIDGYLR+NRF EA
Sbjct: 265 VFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEA 324
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+Q SN+ DEFT+VSILTA A+LGALELGEW+KTYIDKN +KND F GNALIDM
Sbjct: 325 LALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDM 384
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC KFTWT MIVGLAI+G+G++AL MFS M+ ASI PDE+ Y
Sbjct: 385 YFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITY 444
Query: 172 VGVLSARTH 180
+GVL A TH
Sbjct: 445 IGVLCACTH 453
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 46/195 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
VD+AR+ FD + V W M+ GY RV +F+++ LF E++ + + T+V +L+A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVK----FTW 136
+ L LE G+ I YI+ V+ ++ N LIDM+ C +K +W
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277
Query: 137 TTMIVGLAISGNGD-------------------------------KALDMFSQMLRASIK 165
T+++ G A G D +AL +F +M +++K
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337
Query: 166 PDEVAYVGVLSARTH 180
PDE V +L+A H
Sbjct: 338 PDEFTMVSILTACAH 352
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
ARQ FD +P+ +W TMI GY R+N + ++++ + SNI D FT +L
Sbjct: 60 ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTR 119
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
AL+ G+ + + K+ +++F A I M+ C + TW M
Sbjct: 120 NMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIM 179
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ G K+ +F +M + + P+ V V +LSA
Sbjct: 180 LSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
++KN D A++ Y V A++ F +M +D WT MI G EAL +
Sbjct: 370 SIKN-DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAM 428
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYC 128
F + ++I DE T + +L A + G +E G+ + + ++ +K ++ ++D+
Sbjct: 429 FSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL-- 486
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A ++ M +KP+ + + +L A R H
Sbjct: 487 --------------LGRAGRLEEAHEVIVNM---PVKPNSIVWGSLLGACRVH 522
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 149/195 (76%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L IF +M N+D+IS+T IVSG+ N ++D+AR FD+MPE+DYV WT MIDGY+R
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NRF+EAL LF+ +Q +N+ DEFT+VS+LTA A+LGALELGEWI+TYID+NK+KND+F
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 410
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT MIVGLA++G+G+KALDMFS ML+ASI
Sbjct: 411 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 470
Query: 166 PDEVAYVGVLSARTH 180
PDE+ Y+GVLSA TH
Sbjct: 471 PDEITYIGVLSACTH 485
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 46/212 (21%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V +TA+V Y+ Q+D AR FD P+ D + W +I Y +V +F E+ LF ++
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
++ T+V +L+A + L L G+ + +Y+ KV++++ NA+IDMY C
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 292
Query: 131 --------------------TVKFT----------------------WTTMIVGLAISGN 148
FT WT MI G S
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+AL++F M ++KPDE V VL+A H
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 384
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD++PE + +W TMI GY R++ + ++L+ E+ + D +T +
Sbjct: 92 ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 151
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK-----------FTWTTM 139
ALE G + ++ K+ ++ ++F AL+ MY C T + TW +
Sbjct: 152 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 211
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +++ +F M + P V V VLSA
Sbjct: 212 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 249
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A++ Y VD A F +M +RD WT MI G +AL +F +
Sbjct: 406 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 465
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
++I+ DE T + +L+A + G ++ G ++ ++ ++ +I L+D+ +
Sbjct: 466 KASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRL 525
Query: 131 ----------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+K W ++ G + D A + Q+L ++PD A
Sbjct: 526 KEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL--ELEPDNGA 576
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/195 (61%), Positives = 149/195 (76%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L IF +M N+D+IS+T IVSG+ N ++D+AR FD+MPE+DYV WT MIDGY+R
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NRF+EAL LF+ +Q +N+ DEFT+VS+LTA A+LGALELGEWI+TYID+NK+KND+F
Sbjct: 330 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 389
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT MIVGLA++G+G+KALDMFS ML+ASI
Sbjct: 390 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 449
Query: 166 PDEVAYVGVLSARTH 180
PDE+ Y+GVLSA TH
Sbjct: 450 PDEITYIGVLSACTH 464
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 46/212 (21%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V +TA+V Y+ Q+D AR FD P+ D + W +I Y +V +F E+ LF ++
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
++ T+V +L+A + L L G+ + +Y+ KV++++ NA+IDMY C
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 271
Query: 131 --------------------TVKFT----------------------WTTMIVGLAISGN 148
FT WT MI G S
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+AL++F M ++KPDE V VL+A H
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 363
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD++PE + +W TMI GY R++ + ++L+ E+ + D +T +
Sbjct: 71 ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTR 130
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK-----------FTWTTM 139
ALE G + ++ K+ ++ ++F AL+ MY C T + TW +
Sbjct: 131 DIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMI 190
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +++ +F M + P V V VLSA
Sbjct: 191 ISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 228
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A++ Y VD A F +M +RD WT MI G +AL +F +
Sbjct: 385 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 444
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
++I+ DE T + +L+A + G ++ G ++ ++ ++ +I L+D+ +
Sbjct: 445 KASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRL 504
Query: 131 -------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
W ++ G + D A + Q+L ++PD A
Sbjct: 505 KEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL--ELEPDNGA 555
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 143/182 (78%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KDVIS+TAIV+G++N QVD AR+ F +MPERD+V WT MIDGYLR+N ++EAL LF+E+
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
QTS I DEFT+VS+LTA A LGALELGEWI+TYIDKNKVKND F GNALIDMY KC
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNV 314
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
KFTWT M+VGLAI+G G++AL+MFSQML+AS+ PDEV YVGVLSA
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374
Query: 179 TH 180
TH
Sbjct: 375 TH 376
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 65/221 (29%)
Query: 22 IVSGYINREQVDI--ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
I+S +RE D+ ARQ FD +PE W M GY R+ + ++L+ E+ N+
Sbjct: 52 ILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVK 111
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D +T + AL+LG + ++ K + +++FA NALI+MY C +
Sbjct: 112 PDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGI 171
Query: 133 -------------------------KFTWTTMIVGLAISGNGD----------------- 150
+WT ++ G +G D
Sbjct: 172 FDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSW 231
Query: 151 --------------KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M + IKPDE V VL+A
Sbjct: 232 TAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTA 272
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D A++ Y V++A F+ +P+RD WT M+ G EAL
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
+F ++ +++ DE T V +L+A + G ++ G ++ + ++ ++ +I ++D+
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDL- 409
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ +A ++ M +KP+ + + +L A R H
Sbjct: 410 ---------------LGKAGHLKEAHEIIKNM---PMKPNSIVWGALLGACRIH 445
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 244 bits (624), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/189 (62%), Positives = 145/189 (76%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F MK +DVIS+T+IV+G+ N ++D+AR+ FDQMPERDYV WT MIDGYLR+NRF+E
Sbjct: 297 VFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEV 356
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LTLF+++Q SN+ DEFT+VSILTA A+LGALELGEW KTYIDKNK+KND F GNALIDM
Sbjct: 357 LTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDM 416
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC KFTWT MIVGLA +G+G++AL MFS ML AS+ PDE+ Y
Sbjct: 417 YFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITY 476
Query: 172 VGVLSARTH 180
+GV+ A TH
Sbjct: 477 IGVMCACTH 485
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 49/198 (24%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ--TSNIMGDEFTIVSIL 89
V+ AR+ FD + V W ++ GY R R+ E+ LF E++ + + T+V +L
Sbjct: 187 VNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLML 246
Query: 90 TARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK--------------- 133
+A + L L G+ I YI + V+ ++ NALIDM+ C
Sbjct: 247 SACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDV 306
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM---------------LR----------------A 162
+WT+++ G A + D A F QM LR +
Sbjct: 307 ISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS 366
Query: 163 SIKPDEVAYVGVLSARTH 180
++KPDE V +L+A H
Sbjct: 367 NVKPDEFTMVSILTACAH 384
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 20 TAIVSGYINREQVDI--ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
T ++ +E D+ AR+ FD++P+ +W TMI GY R+N ++L++ + N
Sbjct: 71 TKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHN 130
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKCTV---- 132
I D FT +L AL+ G+ + + + + +++F I ++ C +
Sbjct: 131 IKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYA 190
Query: 133 -----------KFTWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVGVLSA 177
TW ++ G +++ +F +M + + P+ V V +LSA
Sbjct: 191 RKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSA 248
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D A++ Y V+ A++ F++M ++D WT MI G EALT
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMY 127
+F + +++ DE T + ++ A ++G + G+ + ++ +K ++ ++D+
Sbjct: 460 MFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDL- 518
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ +AL++ M +KP+ + + +L A R H
Sbjct: 519 ---------------LGRAGHLKEALEVIMNM---PVKPNSIVWGSLLGACRVH 554
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 145/196 (73%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L IF MK++DVIS+TAIV+G+ N QV +AR FD+MPERD+V WT MIDGYL+V
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NRF+E L+LF+E+Q +NI DEFT+VSILTA A+LGALELGEWIK YIDKN++K D F G
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG 390
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY C K +WT +I GLAI+G G++ALDMFSQML+ASI
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450
Query: 166 PDEVAYVGVLSARTHN 181
PDEV +GVL A TH+
Sbjct: 451 PDEVTCIGVLCACTHS 466
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 46/214 (21%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ +V A++ Y +V +AR FD+ + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
++ ++ T+VS+L+A + L L +G+ + Y+ K++ NALIDMY C
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD 270
Query: 131 ----------------------TVKFT----------------------WTTMIVGLAIS 146
FT WT MI G
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 147 GNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ L +F +M A+IKPDE V +L+A H
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ AR FD MP ++ +W MI GY RV A++++ E+ +M DE+T +L
Sbjct: 69 MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC---KCTVK------------FTW 136
A++ G + +I K +++F NALI +Y + +V TW
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G S D+++ +F +M R + P + V VLSA
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSA 229
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 23/163 (14%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIM 79
A++ Y N V+ A + F+ MP RD + WT +I G L +N + EAL +F ++ ++I
Sbjct: 392 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQMLKASIT 450
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
DE T + +L A + G ++ G ++ ++ ++ ++ ++D+
Sbjct: 451 PDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDL------------ 498
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ +A ++ M +KP+ + + +L A R H
Sbjct: 499 ----LGRAGHLKEAHEVIKNM---PVKPNSIVWGSLLGACRVH 534
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 139/196 (70%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + IF +MK +DVIS+T+IV GY+ R + +AR FDQMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F E+L +F+E+Q++ ++ DEFT+VS+LTA A+LG+LE+GEWIKTYIDKNK+KND+ G
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT M+VGLA +G G +A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 166 PDEVAYVGVLSARTHN 181
PD++ Y+GVLSA H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +D+AR FD+ + D W MI GY R+ + E++ L E++ + +
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
T++ +L+A + + +L + + Y+ + K + + NAL++ Y C
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIF 294
Query: 133 --------------------------------------KFTWTTMIVGLAISGNGDKALD 154
+ +WT MI G +G +++L+
Sbjct: 295 RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLE 354
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M A + PDE V VL+A H
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAH 380
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
V A + F ++PE D V+W MI G+ +V+ E + L+ + + D T +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 91 A-RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
+ + GAL G+ + ++ K + ++++ NAL+ MY C + F
Sbjct: 143 GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF 202
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G ++++++ +M R + P V + VLSA
Sbjct: 203 SWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK DV+ A++ Y + A++ F M +RD WT M+ G + +EA+
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F ++Q +I D+ T + +L+A + G ++ K + K+++D +L+ C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQAR--KFFA---KMRSDHRIEPSLVHYGC 510
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
M+ L +G +A ++ +M + P+ + + +L A R HN
Sbjct: 511 ----------MVDMLGRAGLVKEAYEILRKM---PMNPNSIVWGALLGASRLHN 551
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 139/196 (70%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + IF +MK +DVIS+T+IV GY+ R + +AR FDQMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F E+L +F+E+Q++ ++ DEFT+VS+LTA A+LG+LE+GEWIKTYIDKNK+KND+ G
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT M+VGLA +G G +A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 166 PDEVAYVGVLSARTHN 181
PD++ Y+GVLSA H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 46/195 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D+AR FD+ + D W MI GY R+ + E++ L E++ + + T++ +L+A
Sbjct: 186 MDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------------------- 132
+ + +L + + Y+ + K + + NAL++ Y C
Sbjct: 246 CSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISW 305
Query: 133 ---------------------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+ +WT MI G +G +++L++F +M A +
Sbjct: 306 TSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI 365
Query: 166 PDEVAYVGVLSARTH 180
PDE V VL+A H
Sbjct: 366 PDEFTMVSVLTACAH 380
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
V A + F ++PE D V+W MI G+ +V+ E + L+ + + D T +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 91 A-RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
+ + GAL G+ + ++ K + ++++ NAL+ MY C + F
Sbjct: 143 GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF 202
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G ++++++ +M R + P V + VLSA
Sbjct: 203 SWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK DV+ A++ Y + A++ F M +RD WT M+ G + +EA+
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F ++Q +I D+ T + +L+A + G ++ K + K+++D +L+ C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQAR--KFFA---KMRSDHRIEPSLVHYGC 510
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
M+ L +G +A ++ +M + P+ + + +L A R HN
Sbjct: 511 ----------MVDMLGRAGLVKEAYEILRKM---PMNPNSIVWGALLGASRLHN 551
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/195 (49%), Positives = 134/195 (68%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M+ + V+S+T+++SG QVD AR FD+MPERD V WT MIDGY+
Sbjct: 174 MGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWA 233
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RFREAL +F+E+Q SN+ DEFT+VS++TA A LGALE+GEW++ Y+ + +K D F G
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVG 293
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT +I+GLA++G ++A++MF +M+R S
Sbjct: 294 NALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSET 353
Query: 166 PDEVAYVGVLSARTH 180
PDEV ++GVL+A TH
Sbjct: 354 PDEVTFIGVLTACTH 368
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE--LGEWIK 105
V W +I G+ R RF E+ F ++ + T VS+L+A G + LG +
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSA-CGKGTRDVLLGMQVH 146
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAISGNGD 150
+ + V D+ NAL+DMY +C +WT+++ GLA G D
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206
Query: 151 KALDMFSQM 159
+A D+F +M
Sbjct: 207 EARDLFDRM 215
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEI 73
D A++ Y ++ A F M RD WT +I G L VN + E A+ +F +
Sbjct: 289 DAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILG-LAVNGYEEEAIEMFHRM 347
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ DE T + +LTA + G ++ G E+ + I+ + ++ +ID+
Sbjct: 348 IRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDL------ 401
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G +ALD QM + P+ + +L+A R H
Sbjct: 402 ----------LGRAGKITEALDTIDQM---PMTPNSTIWGTLLAACRVHG 438
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 133/190 (70%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M+ ++ +S+T+++SG++ QVD AR FD MPERD V WT MIDGY++ +FRE
Sbjct: 179 ELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFRE 238
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+E+Q S + DEFT+VS++TA A LGALE GEW + Y+ ++ +K D F GNAL+D
Sbjct: 239 ALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVD 298
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC KFTWT +I+GLA++G+G++A++MF +MLR PDEV
Sbjct: 299 MYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVT 358
Query: 171 YVGVLSARTH 180
++GVL+A TH
Sbjct: 359 FIGVLTACTH 368
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 51/219 (23%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERD---YVLWTTMIDGYLRVNRFR 64
FG N V S ++V Y R +AR D P R V+W +I G+ R +FR
Sbjct: 48 FGMELNAHVAS--SLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFR 105
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+ F ++ + ++ T +++L+A + LG + + + V D+ GNALI
Sbjct: 106 LSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALI 165
Query: 125 DMYCKC-----------------TVKFT-----------------------------WTT 138
DMY +C TV +T WT
Sbjct: 166 DMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTA 225
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G +G +AL+MF +M + ++ DE V V++A
Sbjct: 226 MIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTA 264
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 132/190 (69%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ + V+S+T+++SG +VD AR F +MPERD V WT MIDGY++ RFRE
Sbjct: 201 KLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFRE 260
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+E+Q SN+ DEFT+VS++TA A LGALE+GEW++ Y+ + +K D F GNALID
Sbjct: 261 ALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 320
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC KFTWT +I+GLA++G G++A++MF +M+ S PDEV
Sbjct: 321 MYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVT 380
Query: 171 YVGVLSARTH 180
++GVL+A TH
Sbjct: 381 FIGVLTACTH 390
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 44 ERD-YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN-LGALELG 101
ERD V+W +I G+ R RF EA F ++ + T VS+L+A G + LG
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAIS 146
+ + + V D+ NAL+DMY +C +WT+++ GL
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224
Query: 147 GNGDKALDMFSQM 159
G D+A D+F +M
Sbjct: 225 GRVDEARDLFGRM 237
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEI 73
D A++ Y ++ A F M RD WT +I G L VN + EA+ +F +
Sbjct: 311 DAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG-LAVNGYGEEAIEMFHRM 369
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ DE T + +LTA + G ++ G E+ + + + ++ +ID++ +
Sbjct: 370 IGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGR--- 426
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G +ALD QM + P+ + +L+A R H
Sbjct: 427 -------------AGKITEALDAIDQM---PMTPNSTIWGTLLAACRVHG 460
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 128/189 (67%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ + + S+T+++SG + QVD AR FD MPERD + WT MIDGY++V RFR+A
Sbjct: 218 LFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDA 277
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+ +Q + DEFT+VS++TA A LGALE GEW + Y+ + +K D+F GNALIDM
Sbjct: 278 LETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDM 337
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC KFTWT +I+GLA++G G++A+DMF +MLRA PDEV +
Sbjct: 338 YSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTF 397
Query: 172 VGVLSARTH 180
VGVL+A TH
Sbjct: 398 VGVLTACTH 406
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
V+W +I G+ R RF + F ++ ++ M T VS+L+A L LG +
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 108 IDKNKVKNDIFAGNALIDMYCKCT------VKF---------TWTTMIVGLAISGNGDKA 152
+ ++ V D NAL+DMY +C V F +WT++I GL SG D+A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 153 LDMFSQM 159
D+F M
Sbjct: 247 RDLFDHM 253
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 20/164 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y ++ A F M RD WT +I G R EA+ +F +
Sbjct: 327 DVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRML 386
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ DE T V +LTA + G ++ G E+ + + + + LID+
Sbjct: 387 RALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDV------- 439
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G +ALD +M +KP+ + +L++
Sbjct: 440 ---------LGRAGKLKEALDTIDKM---PMKPNSTIWGTLLAS 471
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 113/151 (74%), Gaps = 15/151 (9%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+ R FD+MPERD+V WT MIDGYL+VNRF+E L+LF+E+Q +NI DEFT+VSILTA A
Sbjct: 242 VHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 301
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTT 138
+LGALELGEWIK YIDKN++K D F GNALIDMY C K +WT
Sbjct: 302 HLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTA 361
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+I GLAI+G G++ALDMFSQML+ASI PDEV
Sbjct: 362 VIFGLAINGYGEEALDMFSQMLKASITPDEV 392
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ +V A++ Y +V +AR FD+ + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ ++ T+VS+L+A + L L +G+ + + Y DK ++ +
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERDFV-------------- 256
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+WT MI G + L +F +M A+IKPDE V +L+A H
Sbjct: 257 ---SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 302
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ AR FD MP ++ +W MI GY RV A++++ E+ +M DE+T +L
Sbjct: 69 MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR 128
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC---KCTVK------------FTW 136
A++ G + +I K +++F NALI +Y + +V TW
Sbjct: 129 FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTW 188
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G S D+++ +F +M R + P + V VLSA
Sbjct: 189 NVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSA 229
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIM 79
A++ Y N V+ A + F+ MP RD + WT +I G L +N + EAL +F ++ ++I
Sbjct: 330 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQMLKASIT 388
Query: 80 GDE 82
DE
Sbjct: 389 PDE 391
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 114/162 (70%), Gaps = 15/162 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
++D A+ FD M RD V WT MIDGYLR+N F AL LF+E+Q SN+ DEFT+VSIL
Sbjct: 231 EMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILI 290
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFT 135
A A LGALELGEW+KT IDKN KND F GNAL+DMY KC KFT
Sbjct: 291 ACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFT 350
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WTTMIVGLAI+G+G++AL MFS M+ AS+ PDE+ Y+GVL A
Sbjct: 351 WTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCA 392
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ A Q FD +P +W TMI GY +++ ++++ + TSNI D FT L
Sbjct: 57 MNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKG 116
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
AL+ G+ + + K+ +++F A I M+ C +
Sbjct: 117 FTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGI 157
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 28/154 (18%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
VD+A + FD + V W M+ GY RV +F+ + L +L+A
Sbjct: 158 VDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL-----------------VLSA 200
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALID--------MYCKCTVKFTWTTMIVGL 143
+ L LE G+ I YI+ V++ +FA +D M + V +WT MI G
Sbjct: 201 CSKLKDLEWGKHIFKYINGGIVEH-MFAACGEMDEAQGVFDNMKTRDVV--SWTAMIDGY 257
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ AL +F +M +++KPDE V +L A
Sbjct: 258 LRMNHFIGALALFREMQMSNVKPDEFTMVSILIA 291
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y V A++ F +M ++D WTTMI G EAL +F + +++
Sbjct: 322 ALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTP 381
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
DE T + +L A +DK K F N + K TV + M+
Sbjct: 382 DEITYIGVLCA--------------CMVDKGKS----FFTNMTMQHGIKPTVTH-YGCMV 422
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L G ++AL++ M +KP+ + + L A R H
Sbjct: 423 DLLGCVGCLEEALEVIVNM---PVKPNSIVWGSPLGACRVH 460
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 126/190 (66%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M K VI +T++VSGY+N Q+D AR+ F++ P RD VLWT MI+GY++ NRF +
Sbjct: 289 EIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 348
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+E+Q + D FT+V++LT A LG LE G+WI YID+NK+ D G ALI+
Sbjct: 349 AVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIE 408
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +WT++I GLA++G KAL++F++M++ +KPD++
Sbjct: 409 MYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDIT 468
Query: 171 YVGVLSARTH 180
++GVLSA +H
Sbjct: 469 FIGVLSACSH 478
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 17/149 (11%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFT 84
Y +V RQ F++MP+RD V W +I GY++ R+ +A+ +F+ + Q S++ +E T
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT 236
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------T 131
+VS L+A L LELG+ I Y+ + ++ I GNAL+DMYCKC
Sbjct: 237 VVSTLSACIALKMLELGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMP 295
Query: 132 VK--FTWTTMIVGLAISGNGDKALDMFSQ 158
+K WT+M+ G G D+A ++F +
Sbjct: 296 IKTVICWTSMVSGYVNCGQLDEARELFER 324
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
++ +I + + FR+A+ LF++++ + D FT + A LG + GE + ++
Sbjct: 99 IYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158
Query: 109 DKNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKAL 153
K+ ++ D + N+L+DMY + V+ +W +I G + A+
Sbjct: 159 VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAV 218
Query: 154 DMFSQM-LRASIKPDEVAYVGVLSA 177
D+F +M ++S++P+E V LSA
Sbjct: 219 DVFRRMQQQSSLRPNEATVVSTLSA 243
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F+ + E+D WT++I G + +AL LF E+
Sbjct: 399 DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMV 458
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + D+ T + +L+A ++ G +E G
Sbjct: 459 QTGVKPDDITFIGVLSACSHGGLVEEG 485
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 122/190 (64%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF M +K+VI +T++VSGY+N ++D AR+ F++ P +D VLWT MI+GY++ N F E
Sbjct: 13 KIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDE 72
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LFQE+Q + D+F +V++LT A +GALE G WI YID+ + D G +LI+
Sbjct: 73 AVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIE 132
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT++I GLA++G KAL++FS+M + PDEV
Sbjct: 133 MYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVT 192
Query: 171 YVGVLSARTH 180
++GVLSA +H
Sbjct: 193 FIGVLSACSH 202
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + T+++ Y ++ A + F + E+D WT++I G + +AL LF +++
Sbjct: 123 DAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMK 182
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ DE T + +L+A ++ G +E G
Sbjct: 183 QVEAIPDEVTFIGVLSACSHGGLVEEG 209
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 126/189 (66%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K+VI +T +VSGY N +++ AR+ F+ P RD V+WT MI+GY++ NRF EA
Sbjct: 295 VFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEA 354
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+E+Q + D+F +VS+LT A GA+E G+WI +ID+N++ D G ALI+M
Sbjct: 355 VALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEM 414
Query: 127 YCKC-------------TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC VK T WT++I GLA++G KAL++FS+M +A ++PD++ +
Sbjct: 415 YAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITF 474
Query: 172 VGVLSARTH 180
+GVLSA +H
Sbjct: 475 IGVLSACSH 483
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 17/158 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D +++ Y D+ + FD+MP+RD + W MI GY++ RF +A+ +F +Q
Sbjct: 171 DTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQ 230
Query: 75 -TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
S +M DE T+VS L+A L LELG+ I Y+ N VK GNAL+DMYCKC
Sbjct: 231 EESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDN-VKFTPIIGNALLDMYCKCGCL 289
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMF 156
WTTM+ G A G ++A ++F
Sbjct: 290 SIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELF 327
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYIN--REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+IF ++D++S +++ + ++ A + F + +++ +I + + +
Sbjct: 59 QIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNY 118
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+ L LF +++ + D FT + A LG + E ++ + K ++ D + N+L
Sbjct: 119 KRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSL 178
Query: 124 IDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPD 167
IDMY + + +W MI G + A+++F +M S + PD
Sbjct: 179 IDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPD 238
Query: 168 EVAYVGVLSART 179
E V LSA T
Sbjct: 239 EATVVSTLSACT 250
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ A + F + +D WT++I G + +AL LF +++
Sbjct: 404 DAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMK 463
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + D+ T + +L+A ++ G +E G
Sbjct: 464 QAGVRPDDITFIGVLSACSHGGLVEEG 490
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 122/189 (64%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M K+VI +T+++SGYIN + AR FD+ P RD VLWT MI+GY++ + F +A
Sbjct: 355 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDA 414
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+E+Q I D+FT+V++LT A LGALE G+WI Y+D+N++ D+ G ALI+M
Sbjct: 415 VALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEM 474
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA++G +AL +FS+M R KPD++ +
Sbjct: 475 YSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITF 534
Query: 172 VGVLSARTH 180
+GVLSA +H
Sbjct: 535 IGVLSACSH 543
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS-N 77
Y +++ Y V+ A++ FD+M RD V W MI GY+R RF +A+ F+E+Q N
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------- 130
DE T+VS L+A L LELG+ I Y+ K ++ NAL+DMY KC
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIAR 353
Query: 131 ------TVK--FTWTTMIVGLAISGNGDKALDMFSQ 158
++K WT+MI G G+ +A D+F +
Sbjct: 354 NIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 389
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ + + ++ M+ Y + R+ L LFQ+++ + D FT +L A
Sbjct: 150 AEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGC 209
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
L + GE ++ +I K + D + N+LIDMY + + +W M
Sbjct: 210 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 269
Query: 140 IVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSART 179
I G + A++ F +M + + KPDE V LSA T
Sbjct: 270 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA++ Y VD + + F ++ ++D WT++I G + EAL LF E++
Sbjct: 464 DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEME 523
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
D+ T + +L+A ++ G +E G
Sbjct: 524 RVGAKPDDITFIGVLSACSHGGLVEEG 550
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 122/189 (64%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M K+VI +T+++SGYIN + AR FD+ P RD VLWT MI+GY++ + F +A
Sbjct: 401 IFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDA 460
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+E+Q + D+FT+V++LT A LGALE G+WI Y+D+N++ D+ G ALI+M
Sbjct: 461 VALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEM 520
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA++G +AL +FS+M R KPD++ +
Sbjct: 521 YSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITF 580
Query: 172 VGVLSARTH 180
+GVLSA +H
Sbjct: 581 IGVLSACSH 589
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS-N 77
Y +++ Y V+ A++ FD+M RD V W MI GY+R RF +A+ F+E+Q N
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------- 130
DE T+VS L+A L LELG+ I Y+ K ++ NAL+DMY KC
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIAR 399
Query: 131 ------TVK--FTWTTMIVGLAISGNGDKALDMFSQ 158
++K WT+MI G G+ +A D+F +
Sbjct: 400 NIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ + + ++ M+ Y + R+ L LFQ+++ + D FT +L A
Sbjct: 196 AEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGC 255
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
L + GE ++ +I K + D + N+LIDMY + + +W M
Sbjct: 256 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 315
Query: 140 IVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSART 179
I G + A++ F +M + + KPDE V LSA T
Sbjct: 316 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA++ Y VD + + F ++ ++D WT++I G + EAL LF E++
Sbjct: 510 DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEME 569
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
D+ T + +L+A ++ G +E G
Sbjct: 570 RVGAKPDDITFIGVLSACSHGGLVEEG 596
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M K+V +T++V+GY+ Q+D AR F++ P RD VLWT MI+GY++ NRF E
Sbjct: 265 EIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEE 324
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ LF E+Q + D+F +V++LT A GALE G+WI YID+N++K D G ALI+
Sbjct: 325 TIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIE 384
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +WT++I GLA++G +AL++F M +KPD++
Sbjct: 385 MYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDIT 444
Query: 171 YVGVLSARTH 180
+V VLSA +H
Sbjct: 445 FVAVLSACSH 454
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 17/138 (12%)
Query: 37 QCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDEFTIVSILTARANL 95
Q F++MP+RD V W MI GY+R RF EA+ +++ + T SN +E T+VS L+A A L
Sbjct: 164 QVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVL 223
Query: 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMI 140
LELG+ I YI +++ GNAL+DMYCKC TVK WT+M+
Sbjct: 224 RNLELGKEIHDYI-ASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMV 282
Query: 141 VGLAISGNGDKALDMFSQ 158
G I G D+A ++F +
Sbjct: 283 TGYVICGQLDQARNLFER 300
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ + + ++ MI +++ FR A++LFQ+++ + D +T +L
Sbjct: 61 ANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGC 120
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
+G + GE + ++ K ++ D + N+ +DMY + + +W M
Sbjct: 121 IGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIM 180
Query: 140 IVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
I G ++A+D++ +M ++ KP+E V LSA
Sbjct: 181 ISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSA 219
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F+ + E+D WT++I G + EAL LF+ +Q
Sbjct: 375 DAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQ 434
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
T + D+ T V++L+A ++ G +E G
Sbjct: 435 TCGLKPDDITFVAVLSACSHAGLVEEG 461
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M NK ++S+T +V GY +D+A + FD+MP++D V W MI GY+ NR +E
Sbjct: 236 KLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKE 295
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q NI DE T+VS L+A + LGAL++G WI YI+K+++ ++ G ALID
Sbjct: 296 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 355
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT +I GLA+ GN A+ FS+M+ S+ PDEV
Sbjct: 356 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 415
Query: 171 YVGVLSARTH 180
++G+LSA H
Sbjct: 416 FLGLLSACCH 425
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A++ ++ +D AR+ FD+ RD V W +MI+GY A LF
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDS 240
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ ++ + +++ A G L++ + DK+ V
Sbjct: 241 MTNKTMV----SWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP----------------- 279
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W MI G + G +AL +F++M +I PDEV V LSA
Sbjct: 280 ----WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSA 321
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A Q F ++P R+ + WT +I G A+ F E+ +++M
Sbjct: 351 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 410
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G +E G
Sbjct: 411 PDEVTFLGLLSACCHGGLVEEG 432
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M NK ++S+T +V GY +D+A + FD+MP++D V W MI GY+ NR +E
Sbjct: 264 KLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKE 323
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q NI DE T+VS L+A + LGAL++G WI YI+K+++ ++ G ALID
Sbjct: 324 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 383
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT +I GLA+ GN A+ FS+M+ S+ PDEV
Sbjct: 384 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 443
Query: 171 YVGVLSARTH 180
++G+LSA H
Sbjct: 444 FLGLLSACCH 453
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A++ ++ +D AR+ FD+ RD V W +MI+GY+R EAL ++E
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 198
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
++ I DE T++ ++++ A L L+LG YI++N +K + NAL+DMY KC
Sbjct: 199 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 258
Query: 131 -------------TVKFTWTTMIVGLAISG------------------------------ 147
+WTTM+VG A SG
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318
Query: 148 -NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +AL +F++M +I PDEV V LSA
Sbjct: 319 NRGKEALALFNEMQAMNINPDEVTMVSCLSA 349
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
W I G+L REA+ L++ + Q D +T + A A L + +G I ++
Sbjct: 74 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133
Query: 109 DKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKAL 153
+DIF NA+I + C V+ +W +MI G G +AL
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+ + +M IKPDEV +GV+S+
Sbjct: 194 NFYREMKVEGIKPDEVTMIGVVSS 217
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A Q F ++P R+ + WT +I G A+ F E+ +++M
Sbjct: 379 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 438
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G +E G
Sbjct: 439 PDEVTFLGLLSACCHGGLVEEG 460
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M K+V +T++V+GY+ Q+D AR F++ P RD VLWT MI+GY++ N F +
Sbjct: 265 EIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFED 324
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF E+Q + D+F +V++LT A LGALE G+WI YID+N++K D ALI+
Sbjct: 325 AIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIE 384
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +WT++I GLA++G +AL++F M +KPD++
Sbjct: 385 MYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDIT 444
Query: 171 YVGVLSARTH 180
+V VLSA H
Sbjct: 445 FVAVLSACGH 454
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 78/138 (56%), Gaps = 17/138 (12%)
Query: 37 QCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ-TSNIMGDEFTIVSILTARANL 95
Q F++MPERD V W MI GY+R RF EA+ +++ +Q SN +E T+VS L+A A L
Sbjct: 164 QVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVL 223
Query: 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMI 140
LELG+ I YI N++ GNAL+DMYCKC VK WT+M+
Sbjct: 224 RNLELGKEIHDYI-ANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMV 282
Query: 141 VGLAISGNGDKALDMFSQ 158
G I G D+A +F +
Sbjct: 283 TGYVICGQLDQARYLFER 300
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
FG +++D+++ S + + A + F+ + ++ MI +++ R A+
Sbjct: 34 FGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAI 93
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+LFQ+++ + D +T +L +G + GE I ++ K ++ D + N+L+DMY
Sbjct: 94 SLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMY 153
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAY 171
+ + +W MI G ++A+D++ +M + ++ KP+E
Sbjct: 154 AELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATV 213
Query: 172 VGVLSA 177
V LSA
Sbjct: 214 VSTLSA 219
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F+ + + D WT++I G + EAL LF+ +Q
Sbjct: 375 DAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQ 434
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
T + D+ T V++L+A + G +E G
Sbjct: 435 TCGLKPDDITFVAVLSACGHAGLVEEG 461
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 116/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M NK+VI +T++VSGY + +D AR+ F++ P RD VLWT MI+GY++ N F EA
Sbjct: 272 IFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEA 331
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+++Q + D F +V++L A GALE G+W+ YI +N + D G AL+D+
Sbjct: 332 LKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDV 391
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA++G KALD FSQM A +PD++ +
Sbjct: 392 YAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITF 451
Query: 172 VGVLSARTH 180
+GVL+A H
Sbjct: 452 IGVLTACNH 460
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 84/144 (58%), Gaps = 17/144 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSIL 89
++++A++ FD++PERD V W +I Y+ +F +A+ +F+ + + SN+ DE T+VS L
Sbjct: 164 KMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTL 223
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KF 134
+A + L E+GE I Y+D +++ GNAL+DMYCKC
Sbjct: 224 SACSVLRNQEVGEEIHRYVDA-ELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVI 282
Query: 135 TWTTMIVGLAISGNGDKALDMFSQ 158
WT+M+ G A +G+ D+A ++F +
Sbjct: 283 CWTSMVSGYASNGSLDEARELFER 306
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G N D ++ + +R + A + + V++ MI + FR+ L
Sbjct: 43 GLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLV 102
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY- 127
LF E++ + D FT+ + A LG + GE + Y+ K+ D N+++ MY
Sbjct: 103 LFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYG 160
Query: 128 --CKCTVK------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYV 172
K V +W +I + A+ +F +M R S +K DE V
Sbjct: 161 ALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVV 220
Query: 173 GVLSA 177
LSA
Sbjct: 221 STLSA 225
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+V Y V+ A + F +M ERD WT++I G +AL F +++
Sbjct: 381 DRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQME 440
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE-----WIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ D+ T + +LTA + G +E G KTY K + K++ ++ LID+ C+
Sbjct: 441 EAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTY--KIQPKSEHYS--CLIDLLCR 496
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 112/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+FG M ++V S+ A+V GY VDIAR FD MPERD V W +MI Y++ R EA
Sbjct: 214 LFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEA 273
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+ + + D I SIL+A A +GAL++G WI Y+ ++K++ND+F AL+DM
Sbjct: 274 LELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDM 333
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T W M+ GLAI G+G AL++F QM + P+++ +
Sbjct: 334 YAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITF 393
Query: 172 VGVLSARTH 180
V VLSA +H
Sbjct: 394 VAVLSACSH 402
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 14 KDVISYTAIVSGY-INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
KD T V Y ++ +D A F + D WTTMI G++ +AL +
Sbjct: 57 KDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGL 116
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ + ++FT + +L A + + G + + K D+F NALI MY KC
Sbjct: 117 MRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGS 176
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
TW TMI G G+ ++A +F +M
Sbjct: 177 ITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEM 218
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + A++ Y+ + A FD+MP + V W TMI G A LF E+
Sbjct: 160 DVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMP 219
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
N+ + +++ + LG +++ +L D+ + V
Sbjct: 220 ERNVG----SWNAVVGGYSKLGHVDIAR-------------------SLFDLMPERDV-V 255
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI +G +AL++F +M+ A + D + +LSA
Sbjct: 256 SWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSA 298
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y +D A F+ MP ++ W M+ G AL LF++++
Sbjct: 323 DVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQME 382
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIK-TYIDKN-KVKNDIFAGNALIDMYCK 129
++ + ++ T V++L+A +++G++E G W K +DK + + ++D+ C+
Sbjct: 383 STGVGPNDITFVAVLSACSHIGSVEEG-WKKFNQMDKEFNITPKVEHYGCMVDILCR 438
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++++++S+ A++ GY + AR+ FD MP RD + WT+MI Y + +F +A
Sbjct: 953 VFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKA 1012
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LFQE+ + + DE T+ S+L+A A++GAL++GE + YI K V DI+ GNALIDM
Sbjct: 1013 VRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDM 1072
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC +WT++I GLA++G+ D AL++FS MLR ++P +
Sbjct: 1073 YCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTF 1132
Query: 172 VGVLSARTH 180
VGVL A H
Sbjct: 1133 VGVLLACAH 1141
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 46/214 (21%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A++ GY ++ AR+ FD+M ERD V W ++I GY R R+ E L +F+E
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ +++ GD T+V ++ A LG + + + YI++NKV+ D++ GN LIDMY + ++
Sbjct: 887 MRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSM 946
Query: 133 ----------------------------------------------KFTWTTMIVGLAIS 146
+WT+MI + +
Sbjct: 947 VDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQA 1006
Query: 147 GNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
G KA+ +F +M+ +KPDE+ VLSA H
Sbjct: 1007 GQFGKAVRLFQEMMVTKVKPDEITVASVLSACAH 1040
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F Q+P W MI G+ + N+ EA+ + + + + G+ T +L A A
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-CTVKF--------------TWTTM 139
+ + + + K +D+F NALI Y C + F +W ++
Sbjct: 809 ISNVSCTT-VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSL 867
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
I G + L +F +M A +K D V V V+ A T
Sbjct: 868 ICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACT 907
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N D+ A++ Y V+ F++M +RD V WT++I G AL LF
Sbjct: 1060 NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSL 1119
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+ + T V +L A A+ G ++ G
Sbjct: 1120 MLREGVRPTHGTFVGVLLACAHAGVVDKG 1148
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 120/189 (63%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ ++++S+ A+V G+ + AR+ FD MP+RD + WT+MI GY + ++F +A
Sbjct: 274 VFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDA 333
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LFQE+ + + D+ T+ S+L+A A+LG L++G + YI ++ V+ DI+ GN+LIDM
Sbjct: 334 VKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDM 393
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC + +WT++I GLA++G + ALD+FSQMLR ++P +
Sbjct: 394 YCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTF 453
Query: 172 VGVLSARTH 180
VG+L A H
Sbjct: 454 VGILLACAH 462
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y Q+ A++ FD M +RD V W T+I GY + N+++E L LF + +NI
Sbjct: 156 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 215
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D T+V I+ A ++LG E + + YI +N ++ D++ GN LIDMY + ++
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275
Query: 134 ---------------------------------------FTWTTMIVGLAISGNGDKALD 154
+WT+MI G + + A+
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M+ A +KPD+V VLSA H
Sbjct: 336 LFQEMMAAKVKPDKVTVASVLSACAH 361
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 20/181 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI ++ S +++ A F+Q+ V+W MI G + + EA+ ++ +
Sbjct: 54 DVIRSYSLSSTNLHK-----AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMH 108
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK 133
I G+ T++ + A A + + G I + K ++ +F NALI MY C +
Sbjct: 109 HQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLG 168
Query: 134 F--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F +W T+I G + + L +F M A+IK D V V ++ A +
Sbjct: 169 FAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACS 228
Query: 180 H 180
H
Sbjct: 229 H 229
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M +++IS+T +VSGY Q+D AR F+Q E+D +LWT MI+ ++ F
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCF 262
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EALTLF+++Q + D FT+V++LT ANLGAL+ GEWI Y ++ K+K D G AL
Sbjct: 263 EEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTAL 322
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC WT +I GLA +G +AL++F M R+ +KPD
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 169 VAYVGVLSARTHN 181
V ++GVLSA H
Sbjct: 383 VTFIGVLSACCHG 395
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++++ Y +VDIAR+ FD+MP R VLW M+ Y+R R+ A+ L ++++
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQME 142
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--C-- 130
S + D T+V+ +TA + L LG I Y+D N ++ NAL+DMY K C
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLE 201
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQ 158
VK +WT ++ G ++G DKA +F+Q
Sbjct: 202 EAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ 240
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F +M RD WT +I G + AL LFQ++Q
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
S + D T + +L+A + G ++ G
Sbjct: 375 RSKVKPDGVTFIGVLSACCHGGLVDEGR 402
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M +++IS+T +VSGY Q+D AR F+Q E+D +LWT MI+ ++ F
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCF 262
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EALTLF+++Q + D FT+V++LT ANLGAL+ GEWI Y ++ K+K D G AL
Sbjct: 263 EEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTAL 322
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC WT +I GLA +G +AL++F M R+ +KPD
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 169 VAYVGVLSARTHN 181
V ++GVLSA H
Sbjct: 383 VTFIGVLSACCHG 395
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++++ Y +VDIAR+ FD+MP R VLW M+ Y+R + A+ L ++++
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQME 142
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--C-- 130
S + D T+V+ +TA + L LG I Y+D N ++ NAL+DMY K C
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLE 201
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQ 158
VK +WT ++ G ++G DKA +F+Q
Sbjct: 202 EAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ 240
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F +M RD WT +I G + AL LFQ++Q
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
S + D T + +L+A + G ++ G
Sbjct: 375 RSKVKPDGVTFIGVLSACCHGGLVDEGR 402
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +M++K+V +T++VSGY++ + D AR+ F++ P +D VLWT M++GY++ NRF EA
Sbjct: 188 IFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEA 247
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+ +QT+ I D F +VS+LT A GALE G+WI YI +N+V D G AL+DM
Sbjct: 248 LELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDM 307
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA +G +ALD++ +M ++ D++ +
Sbjct: 308 YAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITF 367
Query: 172 VGVLSARTH 180
V VL+A +H
Sbjct: 368 VAVLTACSH 376
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 19/145 (13%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSIL 89
+++I + FD+MPERD V W +I Y+ RF +A+++FQ + + SN+ DE TIVS L
Sbjct: 80 KMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTL 139
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVK 133
+A + L LE+GE I Y+ + + + GNAL+DM+CKC VK
Sbjct: 140 SACSVLKNLEIGERIYRYV-VTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVK 198
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQ 158
WT+M+ G +G D+A ++F +
Sbjct: 199 -CWTSMVSGYVSNGRTDEARELFER 222
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+V Y ++ A F +M ERD WT++I G AL L+ E++
Sbjct: 297 DKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEME 356
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCK 129
+ D+ T V++LTA ++ G + G I + +++K++ + LID+ C+
Sbjct: 357 NVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCR 412
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
M+ F + L LF E++ + D FT+ +L + L + GE + Y K
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 113 VKNDIFAGNALIDMYC-----KCTVK----------FTWTTMIVGLAISGNGDKALDMFS 157
+++D + N+L+ MY + T K +W +I G + A+ +F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 158 QMLRAS-IKPDEVAYVGVLSA 177
+M R S +K DE V LSA
Sbjct: 121 RMSRESNLKADEGTIVSTLSA 141
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 21/201 (10%)
Query: 1 MGFTLEIFG------TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMI 54
MGF E G + N DV A+V Y+ + AR+ F +MP ++ V W +MI
Sbjct: 219 MGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMI 278
Query: 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114
G + +F+E+L +F+++Q + D+ T+V++L + ANLG LELG+W+ Y+D+N+++
Sbjct: 279 SGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 338
Query: 115 NDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
D F GNAL+DMY KC +++T MIVGLA+ G G KALD+FS+M
Sbjct: 339 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 398
Query: 160 LRASIKPDEVAYVGVLSARTH 180
+ I+PDEV +VGVL+A +H
Sbjct: 399 PKMGIEPDEVTFVGVLTACSH 419
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 51/158 (32%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD P+RD V WTTMI GY+++ RE + L+ I+ SN+ N
Sbjct: 194 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-IRNSNV---------------N 237
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTM 139
L D+F GNAL+DMY KC VK +W +M
Sbjct: 238 L--------------------DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSM 277
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GLA G ++L MF +M R +KPD+V V VL++
Sbjct: 278 ISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 315
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 41 QMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99
Q+ + L+ +I G N E L +++++ + I+ D +TI +L A A A+
Sbjct: 98 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 157
Query: 100 LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMI---- 140
GE + K + +D++ N L+ MY C V +WTTMI
Sbjct: 158 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 217
Query: 141 --------VGLAISGNGDKALDMF 156
VGL I N + LD+F
Sbjct: 218 KMGFAREGVGLYIIRNSNVNLDVF 241
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +D A F M +D +T MI G + +AL LF E+ I
Sbjct: 346 ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP 405
Query: 81 DEFTIVSILTARANLGALELG 101
DE T V +LTA +++G +E G
Sbjct: 406 DEVTFVGVLTACSHVGLVEEG 426
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N DV A+V Y+ + AR+ F +MP ++ V W +MI G + +F+E+L +F++
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+Q + D+ T+V++L + ANLG LELG+W+ Y+D+N+++ D F GNAL+DMY KC
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+++T MIVGLA+ G G KALD+FS+M + I+PDEV +VGVL+A
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438
Query: 178 RTH 180
+H
Sbjct: 439 CSH 441
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 16/159 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD P+RD V WTTMI GY+++ RE + LF E+ N+ D T+V +L++ A
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238
Query: 95 LGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKC-------------TVK--FTWTT 138
LG L LG + YI +N N D+F GNAL+DMY KC VK +W +
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI GLA G ++L MF +M R +KPD+V V VL++
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNS 337
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 41 QMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99
Q+ + L+ +I G N E L +++++ + I+ D +TI +L A A A+
Sbjct: 83 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 142
Query: 100 LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLA 144
GE + K + +D++ N L+ MY C V +WTTMI G
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202
Query: 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G + + +F +M +++ D + V VLS+
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSS 235
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +D A F M +D +T MI G + +AL LF E+ I
Sbjct: 368 ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP 427
Query: 81 DEFTIVSILTARANLGALELG 101
DE T V +LTA +++G +E G
Sbjct: 428 DEVTFVGVLTACSHVGLVEEG 448
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ ++++S+ A++ GY + AR+ FD M +RD + WT MI Y + +F EA
Sbjct: 235 VFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEA 294
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+ S + DE T+ S+L+A A+ G+L++GE YI K VK DI+ GNALIDM
Sbjct: 295 LRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDM 354
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC V +WT++I GLA++G D ALD FS+MLR ++P A+
Sbjct: 355 YCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAF 414
Query: 172 VGVLSARTH 180
VG+L A H
Sbjct: 415 VGILLACAH 423
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y + + +A++ FD+MPERD V W +++ GY + RFRE L +F+ ++ + + G
Sbjct: 117 ALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKG 176
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
D T+V ++ A +LG + + + YI++N V+ D++ GN LIDMY + +
Sbjct: 177 DAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVF 236
Query: 133 --------------------------------------KFTWTTMIVGLAISGNGDKALD 154
+WT MI + +G +AL
Sbjct: 237 DQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALR 296
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M+ + +KPDE+ VLSA H
Sbjct: 297 LFKEMMESKVKPDEITVASVLSACAH 322
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 15/176 (8%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
Y I S ++ + A F Q+ W MI G+ ++ EA+ ++ + +
Sbjct: 14 YNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGL 73
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
+G+ T + + A A + + G I + K ++ ++ NALI+MY C
Sbjct: 74 LGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQK 133
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+W +++ G + L +F M A +K D V V V+ A T
Sbjct: 134 VFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACT 189
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +DV + A+V+GY VD AR F++MPER+ + WT +I GY +++R E
Sbjct: 195 QLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNE 254
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+T+F+ +Q + DE +++ L+A A+LGALELGEWI YIDK+ + + NALID
Sbjct: 255 AITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALID 314
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT+MI GLA+ G G +AL+MFS M R IKP+E+
Sbjct: 315 MYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEIT 374
Query: 171 YVGVLSARTH 180
+V +LSA H
Sbjct: 375 FVAILSACCH 384
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A + F M + + WT+MIDG REAL +F ++ + I
Sbjct: 311 ALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKP 370
Query: 81 DEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
+E T V+IL+A ++G +E+G W K K +K I +ID+
Sbjct: 371 NEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDL 417
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F D L+ T+I EA+ L+ I S++ D +++ +L A L A+
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKF-------- 134
+G I + +DI ALI MY C V F
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215
Query: 135 ----------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+WT +I G A ++A+ MF +M ++PDE+A +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275
Query: 173 GVLSARTH 180
LSA H
Sbjct: 276 AALSACAH 283
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +DV + A+V+GY VD AR F++MPER+ + WT +I GY +++R E
Sbjct: 195 QLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNE 254
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+T+F+ +Q + DE +++ L+A A+LGALELGEWI YIDK+ + + NALID
Sbjct: 255 AITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALID 314
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT+MI GLA+ G G +AL+MFS M R IKP+E+
Sbjct: 315 MYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEIT 374
Query: 171 YVGVLSARTH 180
+V +LSA H
Sbjct: 375 FVAILSACCH 384
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A + F M + + WT+MIDG REAL +F ++ + I
Sbjct: 311 ALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKP 370
Query: 81 DEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
+E T V+IL+A ++G +E+G W K K +K I +ID+
Sbjct: 371 NEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDL 417
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F D L+ T+I EA+ L+ I S++ D +++ +L A L A+
Sbjct: 96 FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI 155
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKF-------- 134
+G I + +DI ALI MY C V F
Sbjct: 156 HVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGY 215
Query: 135 ----------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+WT +I G A ++A+ MF +M ++PDE+A +
Sbjct: 216 AKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAML 275
Query: 173 GVLSARTH 180
LSA H
Sbjct: 276 AALSACAH 283
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 118/193 (61%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M ++++IS+T +VSGY Q+D AR F Q E+D ++WT MI+ ++ F
Sbjct: 200 AVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCF 259
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EAL+LF+E+Q + D FTIV++LT ANLGAL+ GEWI + K+K D G AL
Sbjct: 260 EEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTAL 319
Query: 124 IDMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC VK + WT++I GLA +G +AL++F M R+ +KPD
Sbjct: 320 IDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDS 379
Query: 169 VAYVGVLSARTHN 181
+ ++GVLSA H
Sbjct: 380 ITFIGVLSACCHG 392
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++++ Y + D+AR+ FD+MP R V+W MI Y+R R+ A+ L +E++
Sbjct: 80 DAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEME 139
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--C-- 130
S + D+ T+V+ +T + G L LG I Y+D + NAL+DMY K C
Sbjct: 140 RSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMD-GVFGFSLPVANALLDMYMKNGCLE 198
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQ 158
VK +WT ++ G A +G DKA +F Q
Sbjct: 199 EAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQ 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y V + + F+QM RD WT++I G + AL LF++++
Sbjct: 312 DAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDME 371
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
S + D T + +L+A + G ++ G
Sbjct: 372 RSKVKPDSITFIGVLSACCHGGLVDEGR 399
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 117/193 (60%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F +F MK K+++S+ A++ GY + A++ F++MP RD + WT+MI GY +
Sbjct: 267 FAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQ 326
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ LFQE+ S + DE T+ + L+A A+LG+L+ GE + YI K+ +K+D+F GN+
Sbjct: 327 HAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNS 386
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMYCKC V +WT++I GLA++G + AL++F QML+ I P
Sbjct: 387 LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 446
Query: 168 EVAYVGVLSARTH 180
+VGVL A H
Sbjct: 447 HGTFVGVLLACAH 459
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ ++ +A++ FD M ERD V W ++I GY + NRF++ L LF+E+Q N+
Sbjct: 153 ALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRA 212
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKF----- 134
D T++ ++A L E+G+++ YID++ V D++ GN LIDMY + + F
Sbjct: 213 DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVF 272
Query: 135 ----------------------------------------TWTTMIVGLAISGNGDKALD 154
+WT+MI+G +++ +A+
Sbjct: 273 YQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVK 332
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M+ + +KPDE+ LSA H
Sbjct: 333 LFQEMMVSMVKPDEITVATALSACAH 358
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGY-INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D S + ++ Y ++ + + A F+Q+ ++W MI G + +R +A+ + +
Sbjct: 45 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 104
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY-CKCTV 132
I G T + + + A + + G+ ++ + K ++ +F NALI MY C +
Sbjct: 105 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGEL 164
Query: 133 KF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W ++I G K LD+F +M +++ D V + +SA
Sbjct: 165 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 223
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 117/193 (60%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F +F MK K+++S+ A++ GY + A++ F++MP RD + WT+MI GY +
Sbjct: 226 FAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQ 285
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ LFQE+ S + DE T+ + L+A A+LG+L+ GE + YI K+ +K+D+F GN+
Sbjct: 286 HAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNS 345
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMYCKC V +WT++I GLA++G + AL++F QML+ I P
Sbjct: 346 LIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPT 405
Query: 168 EVAYVGVLSARTH 180
+VGVL A H
Sbjct: 406 HGTFVGVLLACAH 418
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ ++ +A++ FD M ERD V W ++I GY + NRF++ L LF+E+Q N+
Sbjct: 112 ALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRA 171
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKF----- 134
D T++ ++A L E+G+++ YID++ V D++ GN LIDMY + + F
Sbjct: 172 DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVF 231
Query: 135 ----------------------------------------TWTTMIVGLAISGNGDKALD 154
+WT+MI+G +++ +A+
Sbjct: 232 YQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVK 291
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M+ + +KPDE+ LSA H
Sbjct: 292 LFQEMMVSMVKPDEITVATALSACAH 317
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGY-INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D S + ++ Y ++ + + A F+Q+ ++W MI G + +R +A+ + +
Sbjct: 4 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 63
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY-CKCTV 132
I G T + + + A + + G+ ++ + K ++ F NALI MY C +
Sbjct: 64 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGEL 123
Query: 133 KF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W ++I G K LD+F +M +++ D V + +SA
Sbjct: 124 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 182
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + ++D++S+ ++ GYI V++A + F MPE++ + WT+MI G++R +EA
Sbjct: 168 LFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEA 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L L Q++ + I D+ T+ L+A A LGALE G+WI TYI KNK+K D G ALIDM
Sbjct: 228 LCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDM 287
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +TWT +I G A+ G G +ALD F+QM +A IKP +
Sbjct: 288 YVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTF 347
Query: 172 VGVLSARTH 180
VL+A +H
Sbjct: 348 TAVLTACSH 356
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 46/215 (21%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
GT+++K +S + + AR FD++ + V+W TMI Y N EAL
Sbjct: 38 GTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALL 97
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL----- 123
L+ ++ +I + +T +L A + L AL I I K ++++A N+L
Sbjct: 98 LYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYA 157
Query: 124 --------------------------IDMYCKC-TVKF--------------TWTTMIVG 142
ID Y KC V+ +WT+MIVG
Sbjct: 158 ISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVG 217
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL + QML A IKPD++ LSA
Sbjct: 218 FVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSA 252
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D + A++ Y+ ++ A F ++ ++ WT +I G+ + EAL
Sbjct: 271 KNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALD 330
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
F ++Q + I FT ++LTA ++ G +E G+
Sbjct: 331 WFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGK 364
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 121/190 (63%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M+ K+++S+ A+++GY + A++ F++MP R+ + WT MI G + N+ +
Sbjct: 314 RVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSD 373
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LFQE+ +N+ DE T+ S+L+A ++LG L+ G+ + Y+ ++ +K+D++ GNALID
Sbjct: 374 ALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALID 433
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC V +WT+MI+GLA++G D ++FSQMLR ++P +
Sbjct: 434 MYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGS 493
Query: 171 YVGVLSARTH 180
++G+L A TH
Sbjct: 494 FIGILLACTH 503
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 46/192 (23%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ FD+M +RD V W ++I GY + NRF+E L LF ++ +N+ D T+V ++ A +
Sbjct: 211 AQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSY 270
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
L + + + YI+ V D++ GN+LIDMY + + +W M
Sbjct: 271 LCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAM 330
Query: 140 IVGLAISGN-------------------------------GDKALDMFSQMLRASIKPDE 168
+ G A +G+ AL +F +M+ A++KPDE
Sbjct: 331 LTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDE 390
Query: 169 VAYVGVLSARTH 180
+ VLSA +H
Sbjct: 391 ITVSSVLSACSH 402
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGY-INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+ T +K+ S + ++ Y ++R ++ A F Q+ + +++ +I G +
Sbjct: 79 HLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPN 138
Query: 65 EALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EA+ ++ ++ I+GD T + + A + + + G+ + K + +F N+L
Sbjct: 139 EAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSL 198
Query: 124 IDMYC---------KCTVKF------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I MY K K +W ++I G + + LD+F+ M A++ D
Sbjct: 199 IRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADS 258
Query: 169 VAYVGVLSA 177
V V V+ A
Sbjct: 259 VTMVKVILA 267
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 119/189 (62%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +M++K+V +T++V GY++ ++D AR F++ P +D VLWT M++GY++ NRF EA
Sbjct: 204 VFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEA 263
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+ +QT+ I D F +VS+LT A GALE G+WI YI++N+V D G AL+DM
Sbjct: 264 LELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDM 323
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA++G +ALD++ +M ++ D + +
Sbjct: 324 YAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITF 383
Query: 172 VGVLSARTH 180
V VL+A H
Sbjct: 384 VAVLTACNH 392
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 50/200 (25%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFT 84
Y + +++I + FD+MP+RD V W +I Y+ RF +A+ +F+ + Q SN+ DE T
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGT 150
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------- 130
IVS L+A + L LE+GE I ++ + + + GNAL+DM+CKC
Sbjct: 151 IVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMR 209
Query: 131 --TVKFTWTTMIVGLAISG------------------------NG-------DKALDMFS 157
VK WT+M+ G +G NG D+AL++F
Sbjct: 210 DKNVK-CWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFR 268
Query: 158 QMLRASIKPDEVAYVGVLSA 177
M A I+PD V +L+
Sbjct: 269 CMQTAGIRPDNFVLVSLLTG 288
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
+++ M+ F + L LF E++ + D FT+ +L + L + GE + Y
Sbjct: 12 LMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGY 71
Query: 108 IDKNKVKNDIFAGNALIDMYC-----KCTVK----------FTWTTMIVGLAISGNGDKA 152
K ++ D + N+L+ MY + T K +W +I +G + A
Sbjct: 72 AVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDA 131
Query: 153 LDMFSQMLRAS-IKPDEVAYVGVLSA 177
+ +F +M + S +K DE V LSA
Sbjct: 132 IGVFKRMSQESNLKFDEGTIVSTLSA 157
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V + A+++ Y + A+ FD MP+R+ + WT +I GY +NR +A+ +F+ +
Sbjct: 175 RNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTM 234
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
Q N++ DE T++++L+A A LGALELGEWI+ YID + + ++ NALIDMY K
Sbjct: 235 QLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNI 294
Query: 131 --------TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
++K TWTTMI GLA+ G G +AL+MFS+M R +KP+E+ ++ VLSA
Sbjct: 295 KRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSAC 354
Query: 179 TH 180
+H
Sbjct: 355 SH 356
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+++V + A++ Y + A F+ M + V WTTMI G +AL +F
Sbjct: 275 HRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSR 334
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGE 102
++ + +E T +++L+A +++G ++L
Sbjct: 335 MERDRVKPNEITFIAVLSACSHVGLVQLAR 364
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/189 (38%), Positives = 118/189 (62%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++++ V+S+T ++ G+ +D AR+ FD+MPERD W ++ GY++ + +EA
Sbjct: 285 VFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEA 344
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+LF E+Q ++++ DE T+V++LTA + LGALE+G W+ YI+K+++ + G +LIDM
Sbjct: 345 LSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDM 404
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TWT MI GLA G+ ++A++ F M+ KPDE+ +
Sbjct: 405 YAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITF 464
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 465 IGVLSACCH 473
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 48/197 (24%)
Query: 29 REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI--QTSNIMGDEFTIV 86
R ++ AR+ FD+ P RD V W T+I GY+R EAL LF + + + + DE T++
Sbjct: 173 RGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMI 232
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------T 131
+ ++ + LELG + ++D + V + NAL+DMY KC
Sbjct: 233 AAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR 292
Query: 132 VKFTWTTMIVGLAISGNGD-------------------------------KALDMFSQML 160
+WTTMIVG A G D +AL +F +M
Sbjct: 293 TVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ 352
Query: 161 RASIKPDEVAYVGVLSA 177
AS+ PDE+ V +L+A
Sbjct: 353 EASVVPDEITMVNLLTA 369
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A F ++PE++ + WT MI G EA+ F+ +
Sbjct: 399 TSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQK 458
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G ++ G
Sbjct: 459 PDEITFIGVLSACCHAGLVKEG 480
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 114/193 (59%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M +++IS+T +VSGY Q+D AR F Q ++D +LWT MI+ ++ F
Sbjct: 200 AVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSF 259
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EALTLF+++Q + D+FT+V++LT AN+GAL+ GEWI Y + +K D G AL
Sbjct: 260 EEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTAL 319
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I+MY KC WT +I GLA +G KAL++F +M R+ KPD
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 169 VAYVGVLSARTHN 181
+ ++GVL+A H
Sbjct: 380 ITFIGVLNACCHG 392
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++++ Y +VD AR+ FD+MP+R VLW M+ Y+R RF A+ L +E++
Sbjct: 80 DAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEME 139
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
S D T+V+ +TA + G L LG I+ Y+D + NAL+DMY K
Sbjct: 140 RSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMD-GVFGFSLPVANALLDMYTKNGYLE 198
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQ 158
VK +WT ++ G A++G DKA +F Q
Sbjct: 199 EAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQ 237
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y VD + Q F +M RD WT +I G + +AL LF+E+Q
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S D T + +L A + G ++ G
Sbjct: 372 RSKTKPDGITFIGVLNACCHGGLVDEG 398
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 120/190 (63%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + KDV + A+V+GY+ ++ AR+ F++MP+R+ + WTT+I GY + NR E
Sbjct: 178 KLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHE 237
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+++Q + DE ++++L+A A+LGALELGEWI YI+K+ + + NALID
Sbjct: 238 AIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALID 297
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY K TW+T+I LA+ G G +A+DMF +M +A ++P+EV
Sbjct: 298 MYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVT 357
Query: 171 YVGVLSARTH 180
+V +LSA +H
Sbjct: 358 FVAILSACSH 367
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 46/185 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F D L+ T I + + A+ L+ I+ + D ++I S+L A L A+
Sbjct: 79 FSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAV 138
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------VKF------------- 134
E+G I T + + D+ +LI MY C V F
Sbjct: 139 EVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGY 198
Query: 135 ----------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+WTT+I G A + +A+++F +M ++PDE+A +
Sbjct: 199 VKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAML 258
Query: 173 GVLSA 177
VLSA
Sbjct: 259 AVLSA 263
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 114/184 (61%), Gaps = 16/184 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQE 72
KDV+S+ AI+ GY +Q+ A++ F M R+ V W TMI Y++ F A+++FQ+
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+Q+ N+ E T+VS+L+A A+LGAL++GEWI YI ++K D+ GNALIDMYCKC
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F W ++IVGL ++G G++A+ F M + IKPD V +VG+LS
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315
Query: 178 RTHN 181
+H+
Sbjct: 316 CSHS 319
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+I T ++ Y + A++ F MP RD V MI + EA LF +
Sbjct: 44 DMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT 103
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
N + S++T LG + + D N VK D+ + NA+ID YCK
Sbjct: 104 ERN----SCSWNSMITCYCKLGDINSA---RLMFDCNPVK-DVVSWNAIIDGYCKSKQLV 155
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
TW TMI G A+ MF QM ++KP EV V +LSA
Sbjct: 156 AAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215
Query: 179 TH 180
H
Sbjct: 216 AH 217
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 7 IFGTMKNK----DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
I G ++ K DV+ A++ Y ++ A F + ++ W ++I G R
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 286
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
EA+ F ++ I D T V IL+ ++ G L G+
Sbjct: 287 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 326
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ +F M +++V+S+T +VSGY QVD AR F Q E+D ++WT MI+ Y++ F
Sbjct: 200 AVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCF 259
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EAL+LF+++Q I D FT+V++LT ANLGAL+ G+ I + + +K D G AL
Sbjct: 260 IEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTAL 319
Query: 124 IDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC +V+ WT +I GLA +G +AL++F M R+ KPD
Sbjct: 320 IDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDS 379
Query: 169 VAYVGVLSARTHN 181
V ++GVLSA H
Sbjct: 380 VTFIGVLSACCHG 392
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++++ Y +++ AR+ FD+MP+R V+W M+ Y+R R EA+ L +E++
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CTV 132
+ D T+++ LTA + G L LG I Y+D + NAL+DMY K C
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMD-GVTGFSLPVANALLDMYVKNGCLE 198
Query: 133 K-------------FTWTTMIVGLAISGNGDKALDMFSQ 158
+ +WTT++ G A +G DKA +F Q
Sbjct: 199 EAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQ 237
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y V+ + + F++M RD WT +I G + AL LF++++
Sbjct: 312 DAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDME 371
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S D T + +L+A + G ++ G
Sbjct: 372 RSEAKPDSVTFIGVLSACCHGGLVDEG 398
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats.
Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ A++ GY +D AR+ FD MPE+D V WT MI GY + R+++
Sbjct: 247 KMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQD 306
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNA 122
L LF+ +QT SN+ +E T+VS+L+A ANL ALE G W+ +IDK+K + N+ G A
Sbjct: 307 TLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAA 366
Query: 123 LIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC VK W +I LA++GN ++D F QM R KP+
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPN 426
Query: 168 EVAYVGVLSARTH 180
++ +VGVL+A +H
Sbjct: 427 DITFVGVLTACSH 439
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 6 EIFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+FG+ DV+S+ ++ GY+ +++ A++ FD+MP R+ V W+TM+ GY
Sbjct: 151 EVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELD 210
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--------- 115
A +F + I + T S++T A G L L + D+ V+N
Sbjct: 211 VAREMFDRMPA--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRNLVSWNAMLR 265
Query: 116 ------DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDE 168
D+ L D+ + V +WT MI G A +G L++F M ++++P+E
Sbjct: 266 GYSVNSDMDGARELFDVMPEKDV-VSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 324
Query: 169 VAYVGVLSA 177
V V VLSA
Sbjct: 325 VTMVSVLSA 333
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 119/193 (61%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F L++F M+ ++V+S+T ++SG I+ + AR+ FD++P ++ V WT MI+GY+R +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EAL LF+ +Q NI +E+T+VS++ A +G L LG I Y KN ++ ++ G A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297
Query: 123 LIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC ++K TW +MI L + G G +AL++FS+M R ++KPD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 168 EVAYVGVLSARTH 180
+ ++GVL A H
Sbjct: 358 AITFIGVLCACVH 370
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMG 80
++ Y Q ++++ FD M E+D + W +MI Y + EAL +F ++ +
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
+ T+ ++L A A+ GAL G+ I + K ++ ++ G ++IDMYCKC
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 1411
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
VK +WT M+ G + G +ALD+F +M+RA +KP+ + +V VL+A +H
Sbjct: 1412 DRMKEKNVK-SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D+ +A++ Y Q+ AR FD++P R+ V WT+MI GY++ + AL LF++
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235
Query: 74 -------QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+N+ D +VS+L+A + + + E + ++ K I GN L+D
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295
Query: 127 YCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 170
Y KC +W +MI A SG +AL++F M+R ++ + V
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 171 YVGVLSARTH 180
VL A H
Sbjct: 1356 LSAVLLACAH 1365
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+I+ Y +V++A++ FD+M E++ WT M+ GY R +EAL +F ++ + +
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T VS+L A ++ G +E G W K ++ I ++D++ +
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR--------- 1502
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+G ++A ++ +M +KPD V + +L A R H
Sbjct: 1503 -------AGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIH 1535
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+AL L++ + I D+FT ++ A N +++LG+ + + K D+F N LI
Sbjct: 108 QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLI 167
Query: 125 DMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQM 159
D Y KC +F +WTT+I GL G+ +A +F ++
Sbjct: 168 DFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + A + F+ MP + W +MI +EAL LF E++ N+
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355
Query: 80 GDEFTIVSILTARANLGALELG 101
D T + +L A ++ ++ G
Sbjct: 356 PDAITFIGVLCACVHIKNVKEG 377
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
W ++I R EAL F ++ ++ + + + + L L G
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169
Query: 110 KNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALD 154
+ D+F +ALIDMY KC +K +WT+MI G + D AL
Sbjct: 1170 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229
Query: 155 MFSQMLRA--------SIKPDEVAYVGVLSA 177
+F L ++ D V V VLSA
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSA 1260
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K V+S+T +V GY ++ A + F++MPE+D VLW +I G+++ R +EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q S++ D+ T+V+ L+A + LGAL++G W+ Y+DK+ + ++ G AL+DM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K TWT +I GLA+ G A+ FS+M+ + PDE+ +
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 493 IGVLSACCH 501
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 2 GFTL-----EIFGTMK----NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTT 52
GF+L EI G + + D+ + AI+ ++ ++ AR+ FD+ RD V W +
Sbjct: 167 GFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
+I+GY+R EA L+ ++ N+M DE T++ +++A A L L LG + I++
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 113 VKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISG---------- 147
+ + NAL+DMY KC +WTTM++G A G
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 148 ---------------------NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M +S+ PD++ V LSA
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + A Q F++MP R+ + WT +I G + A++ F E+ + ++
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G ++ G
Sbjct: 487 PDEITFIGVLSACCHGGLVDQG 508
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 50 WTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
W I GY+ A+ L++ ++ + + D +T + A I ++
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHV 181
Query: 109 DKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKAL 153
+ +D+F NA+I + C V+ +W ++I G G D+A
Sbjct: 182 IQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAF 241
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
D++ +M ++ PDEV +GV+SA
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSA 265
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K V+S+T +V GY ++ A + F++MPE+D VLW +I G+++ R +EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q S++ D+ T+V+ L+A + LGAL++G W+ Y+DK+ + ++ G AL+DM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K TWT +I GLA+ G A+ FS+M+ + PDE+ +
Sbjct: 433 YAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITF 492
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 493 IGVLSACCH 501
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 55/231 (23%)
Query: 2 GFTL-----EIFGTMK----NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTT 52
GF+L EI G + + D+ + AI+ ++ ++ AR+ FD+ RD V W +
Sbjct: 167 GFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNS 226
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
+I+GY+R EA L+ ++ N+M DE T++ +++A A L L LG + I++
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 113 VKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISG---------- 147
+ + NAL+DMY KC +WTTM++G A G
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 148 ---------------------NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M +S+ PD++ V LSA
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSA 397
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + A Q F++MP R+ + WT +I G + A++ F E+ + ++
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G ++ G
Sbjct: 487 PDEITFIGVLSACCHGGLVDQG 508
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 50 WTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
W I GY+ A+ L++ ++ + + D +T + A I ++
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHV 181
Query: 109 DKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKAL 153
+ +D+F NA+I + C V+ +W ++I G G D+A
Sbjct: 182 IQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAF 241
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
D++ +M ++ PDEV +GV+SA
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSA 265
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + K ++S+T ++ GY +D AR+ FD+MPERD W ++ GY++ R +EA
Sbjct: 279 VFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEA 338
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++Q + + D+ T+V++L+A + LGALE+G W+ YID+ +V + G L+DM
Sbjct: 339 LRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDM 398
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TWT MI GLA G+ D A+ F +M+ ++PDE+ +
Sbjct: 399 YSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITF 458
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 459 IGVLSACCH 467
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILTARA 93
AR+ FD RD V W T+I GY+R REAL +F + + + DE T++ +++ A
Sbjct: 174 ARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSA 233
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTT 138
L LELG + Y++ + V+ + N ++DMY KC +WTT
Sbjct: 234 QLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTT 293
Query: 139 MIVGLAISG-------------------------------NGDKALDMFSQMLRASIKPD 167
MIVG A G G +AL +F M A ++PD
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPD 353
Query: 168 EVAYVGVLSA 177
++ V +LSA
Sbjct: 354 DITMVNLLSA 363
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +V Y ++ A + F ++PE++ + WT MI G A+ FQ + +
Sbjct: 393 TNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
DE T + +L+A + G ++ G E+ + K ++ + + ++D+
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDL 500
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV A++ Y+ Q +ARQ F MP ++ V W +MI G F+EAL +F+
Sbjct: 270 HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+QT + D T+V +L + ANLG LELG+W+ +YIDKN +K D + NAL+DMY KC
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 131 ---------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+K +++T MIVG A+ G D+AL +FS+M R ++PD V VGVLSA
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSA 449
Query: 178 RTH 180
+H
Sbjct: 450 CSH 452
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 25/172 (14%)
Query: 23 VSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82
VSG+I + + FDQ P D + WTT+I Y ++ EA+ F + N D
Sbjct: 185 VSGFI-----EAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADR 236
Query: 83 FTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKC---------- 130
T+V +L+A + LG LG+ I Y+D + V +D+F GNAL+DMY KC
Sbjct: 237 MTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLF 296
Query: 131 ---TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +W +MI GLA G +AL MF +M +KPD V VGVL++
Sbjct: 297 HLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNS 348
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +D A F M +D +T MI G+ + AL +F E+ +
Sbjct: 379 ALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRP 438
Query: 81 DEFTIVSILTARANLGALELG 101
D T+V +L+A ++ G LE G
Sbjct: 439 DHVTLVGVLSACSHAGLLEEG 459
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +D++S+ ++ GYI +D+A + F MPE++ + WTTMI G++R+ +EA
Sbjct: 167 LFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEA 226
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+L Q++ + I D T+ L+A A LGALE G+WI TYI+KN++K D G L DM
Sbjct: 227 LSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDM 286
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC WT +I GLAI G G +ALD F+QM +A I P+ + +
Sbjct: 287 YVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITF 346
Query: 172 VGVLSARTH 180
+L+A +H
Sbjct: 347 TAILTACSH 355
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 50/217 (23%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIA--RQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
GT++N+ +S T +VS Y E V++A R FD + + V+W TM+ Y N A
Sbjct: 37 GTIRNQLTVS-TLLVS-YARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAA 94
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L L+ ++ +++ + +T +L A + L A E + I +I K +++A N+L+ +
Sbjct: 95 LLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRV 154
Query: 127 YCKCT---------------------------VKF-------------------TWTTMI 140
Y +KF +WTTMI
Sbjct: 155 YAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMI 214
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VG G +AL + QML A IKPD + LSA
Sbjct: 215 VGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSA 251
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y+ +++ A F ++ ++ WT +I G + REAL F ++Q + I + T
Sbjct: 287 YVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITF 346
Query: 86 VSILTARANLGALELGE 102
+ILTA ++ G E G+
Sbjct: 347 TAILTACSHAGLTEEGK 363
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 116/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF TM DV+S+T++++GY V+ AR+ FD+MPE++ V W+TMI GY + N F +A
Sbjct: 596 IFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKA 655
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ L+ +Q+ + +E +VS++++ A+LGALELGE Y+ +NK+ ++ G AL+DM
Sbjct: 656 IELYNVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDM 715
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +WT +I G A+ G+ +KAL FS+M+R + P ++ +
Sbjct: 716 YARCGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITF 775
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 776 TAVLSACSH 784
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TA+V Y +D A Q FD++ E+D + WT +I G+ +AL F E+
Sbjct: 705 NLILGTALVDMYARCGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMI 764
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + + T ++L+A ++ G +E G
Sbjct: 765 RTGLTPRDITFTAVLSACSHRGLVERG 791
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 44 ERDYVLWTTMID-------GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
++ W ++ D GY ++ + + Q I D T ++ A LG
Sbjct: 494 QKKLSFWDSVTDSHAGAFKGYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLG 553
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK------CTVKF---------TWTTMIV 141
++++G ++ ++ +ND++ N+L++MY + F +WT+MI
Sbjct: 554 SIDMGMQAHGHVVRHGFENDVYVQNSLVNMYSNLGDIRAASYIFQTMSQLDVVSWTSMIA 613
Query: 142 GLAISGNGDKALDMFSQMLRASI 164
G SG+ + A +F +M ++
Sbjct: 614 GYNKSGDVESARKLFDKMPEKNL 636
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ A++ GY +D AR+ FD MPE+D V WT MI GY + R+++
Sbjct: 247 KMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQD 306
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNA 122
L LF+ +QT SN+ +E T+VS+L+A ANL ALE G W+ +IDK+K + N+ G A
Sbjct: 307 TLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAA 366
Query: 123 LIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC VK W +I LA++GN ++D F QM R KP+
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPN 426
Query: 168 EVAYVGVLSARTH 180
++ +VGVL+A +H
Sbjct: 427 DITFVGVLTACSH 439
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 6 EIFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+FG+ DV+S+ ++ GY+ +++ A++ FD+MP R+ V W+TM+ GY
Sbjct: 151 EVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELD 210
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--------- 115
A +F + I + T S++T A G L L + D+ V+N
Sbjct: 211 VAREMFDRMPA--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRNLVSWNAMLR 265
Query: 116 ------DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDE 168
D+ L D+ + V +WT MI G A +G L++F M ++++P+E
Sbjct: 266 GYSVNSDMDGARELFDVMPEKDV-VSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 324
Query: 169 VAYVGVLSA 177
V V VLSA
Sbjct: 325 VTMVSVLSA 333
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 119/193 (61%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F L++F M+ ++V+S+T ++SG I+ + AR+ FD++P ++ V WT MI+GY+R +
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EAL LF+ +Q NI +E+T+VS++ A +G L LG I Y KN ++ ++ G A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297
Query: 123 LIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC ++K TW +MI L + G G +AL++FS+M R ++KPD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357
Query: 168 EVAYVGVLSARTH 180
+ ++GVL A H
Sbjct: 358 AITFIGVLCACVH 370
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMG 80
++ Y Q ++++ FD M E+D + W +MI Y + EAL +F ++ +
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
+ T+ ++L A A+ GAL G+ I + K ++ ++ G ++IDMYCKC
Sbjct: 2225 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 2284
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
VK +WT M+ G + G +ALD+F +M+RA +KP+ + +V VL+A +H
Sbjct: 2285 DRMKEKNVK-SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 2339
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D+ +A++ Y Q+ AR FD++P R+ V WT+MI GY++ + AL LF++
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108
Query: 74 -------QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+N+ D +VS+L+A + + + E + ++ K I GN L+D
Sbjct: 2109 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168
Query: 127 YCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 170
Y KC +W +MI A SG +AL++F M+R ++ + V
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 171 YVGVLSARTH 180
VL A H
Sbjct: 2229 LSAVLLACAH 2238
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+I+ Y +V++A++ FD+M E++ WT M+ GY R +EAL +F ++ + +
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T VS+L A ++ G +E G W K ++ I ++D++ +
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGR--------- 2375
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+G ++A ++ +M +KPD V + +L A R H
Sbjct: 2376 -------AGCLNEAYNLIKRM---KMKPDFVVWGSLLGACRIH 2408
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+AL L++ + I D+FT ++ A N +++LG+ + + K D+F N LI
Sbjct: 108 QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLI 167
Query: 125 DMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQM 159
D Y KC +F +WTT+I GL G+ +A +F ++
Sbjct: 168 DFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + A + F+ MP + W +MI +EAL LF E++ N+
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355
Query: 80 GDEFTIVSILTARANLGALELG 101
D T + +L A ++ ++ G
Sbjct: 356 PDAITFIGVLCACVHIKNVKEG 377
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 25/188 (13%)
Query: 15 DVISYTAIVSGYIN--REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D I+Y +I+ G + + ++A + + + + W ++I R EAL F
Sbjct: 1946 DGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS 2005
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-T 131
++ ++ + + + + L L G + D+F +ALIDMY KC
Sbjct: 2006 LRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ 2065
Query: 132 VK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRA--------SIKPDEV 169
+K +WT+MI G + D AL +F L ++ D V
Sbjct: 2066 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125
Query: 170 AYVGVLSA 177
V VLSA
Sbjct: 2126 VMVSVLSA 2133
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF ++ + ++S+T ++SGY +D++R+ FD M E+D VLW MI G ++ R ++A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LFQE+QTSN DE T++ L+A + LGAL++G WI YI+K + ++ G +L+DM
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T+T +I GLA+ G+ A+ F++M+ A I PDE+ +
Sbjct: 434 YAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITF 493
Query: 172 VGVLSARTH 180
+G+LSA H
Sbjct: 494 IGLLSACCH 502
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+ P RD V W +I+GY ++ +A+ +++ +++ + D+ T++ ++++ +
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LG L G+ Y+ +N ++ I NAL+DM+ KC +WTTM
Sbjct: 270 LGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTM 329
Query: 140 IVGLAISG-------------------------------NGDKALDMFSQMLRASIKPDE 168
I G A G G AL +F +M ++ KPDE
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDE 389
Query: 169 VAYVGVLSA 177
+ + LSA
Sbjct: 390 ITMIHCLSA 398
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIM---GDEFTIVSILTARANLGALELGEWIKT 106
W I G+ +E+ L++++ D FT + A+L LG I
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 107 YIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDK 151
++ K +++ NA I M+ C V+ +W +I G G +K
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
A+ ++ M +KPD+V +G++S+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSS 266
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 121/195 (62%), Gaps = 23/195 (11%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF +I ++N V Y+ G ++ AR+ FD+MP+ D V W+ MI GY RV
Sbjct: 162 GFDCDIH--VQNTMVHMYSCCAGG------INSARKVFDEMPKSDSVTWSAMIGGYARVG 213
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
R EA+ LF+E+Q + + DE T+VS+L+A +LGALELG+WI+ YI+++++ + N
Sbjct: 214 RSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSN 273
Query: 122 ALIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALIDM+ KC +K +WT++IVG+A+ G G +A +F +M + + P
Sbjct: 274 ALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAP 333
Query: 167 DEVAYVGVLSARTHN 181
D+VA++G+LSA +H+
Sbjct: 334 DDVAFIGLLSACSHS 348
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
D L+ T+I Y + ++ AL L+ + I+ ++FT +L A A L L LG+ +
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154
Query: 105 KTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKFTWTTMIVGLAISGN 148
+ K DI N ++ MY C + TW+ MI G A G
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+A+ +F +M A + PDE+ V +LSA T
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACT 245
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+K V A++ + + A + F M E+ V WT++I G R +EA LF+E
Sbjct: 266 HKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEE 325
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ +S + D+ + +L+A ++ G +E G E+ + + K K+ I ++DMYC+
Sbjct: 326 MTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCR 383
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 70/189 (37%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + N+ +S+T ++ G+ ++ AR FD+MPERD W ++ GY++ + +EA
Sbjct: 281 VFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEA 340
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF E+Q S + +E T+V++L+A + LGALE+G W+ YID++K+ + G +L+DM
Sbjct: 341 IALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDM 400
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K TWT+MI GLA G+ D+A++ F +M+ ++PDE+ +
Sbjct: 401 YAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITF 460
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 461 IGVLSACCH 469
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 48/211 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A + + R + AR+ FD+ P RD V W T+I GY+R REAL LF +
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214
Query: 75 TSN--IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ DE T++ ++ A +G LELG+ + ++D V+ + NA++DMY KC
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274
Query: 131 -------------TVKFTWTTMIVGLAISG------------------------------ 147
+WTTMIVG A G
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334
Query: 148 -NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +A+ +F +M ++ + P+E+ V +LSA
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSA 365
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y + A F+++P ++ + WT+MI G EA+ FQ + +
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G +E G
Sbjct: 455 PDEITFIGVLSACCHAGLVEAG 476
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 113/187 (60%), Gaps = 16/187 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
+M DV + A+++GY + AR F++MP+R+ + WT +I GY + NR +A+ L
Sbjct: 142 SMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIAL 201
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYC 128
F+ +Q N+ DE ++ LTA A LGALELGEWI+ YID+ + +I NALIDMY
Sbjct: 202 FRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYA 261
Query: 129 KC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
K TWTTMI GLA+ G G +AL+MFS+M RA +KP+++ ++
Sbjct: 262 KSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIA 321
Query: 174 VLSARTH 180
+LSA +H
Sbjct: 322 ILSACSH 328
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A Q F+ M + + WTTMI G EAL +F ++ + +
Sbjct: 255 ALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKP 314
Query: 81 DEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
++ T ++IL+A +++G ++ G W I + ++ I +ID+
Sbjct: 315 NDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDL------------- 361
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ +A + +QM +P+ V + +L+A TH
Sbjct: 362 ---LGRAGHLKEAQTLLAQM---PFEPNAVIWGSLLAACNTH 397
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 117/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + NK V+S+T ++ G+ ++ AR FD+MPERD W ++ GY++ + +EA
Sbjct: 281 VFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEA 340
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF E+Q S + +E T+V++L+A + LGALE+G W+ YID++++ + G +L+DM
Sbjct: 341 IALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDM 400
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K TWT MI GLA G+ D+A++ F +M+ ++PDE+ +
Sbjct: 401 YAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITF 460
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 461 IGVLSACCH 469
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 48/192 (25%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI--QTSNIMGDEFTIVSILTA 91
+AR+ FD+ P RD V W T+I GY+R REAL LF + + DE T++ ++
Sbjct: 174 LARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSG 233
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTW 136
A +G LELG+ + ++D V+ + NA++DMY KC +W
Sbjct: 234 CAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSW 293
Query: 137 TTMIVGLAISG-------------------------------NGDKALDMFSQMLRASIK 165
TTMIVG A G G +A+ +F +M + +
Sbjct: 294 TTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVD 353
Query: 166 PDEVAYVGVLSA 177
P+E+ V +LSA
Sbjct: 354 PNEITMVNLLSA 365
Score = 39.7 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y + A F ++P+++ + WT MI G EA+ FQ + +
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G ++ G
Sbjct: 455 PDEITFIGVLSACCHAGLVKEG 476
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DVIS+ +++ GY+ Q++ AR+ FD MP R V WTTMI GY R+ + +
Sbjct: 167 KVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGD 226
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+E+Q I DE +I+++L A A LGALE+G+WI Y DKN NALI+
Sbjct: 227 ALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIE 286
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W+TMI GLA G G +A+ +F +M + + P+E+
Sbjct: 287 MYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEIT 346
Query: 171 YVGVLSARTH 180
++GVL A +H
Sbjct: 347 FLGVLLACSH 356
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D A FDQ+ E+D + W+TMI G + EA+ LF+E+ +
Sbjct: 283 ALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAP 342
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+E T + +L A ++ G + G ++ ++ +I LID+
Sbjct: 343 NEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDL------------- 389
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L SG +ALD S+M IKPD + +LS+ R H
Sbjct: 390 ---LGRSGCLGQALDTISKM---PIKPDSRIWNSLLSSCRIH 425
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 49/199 (24%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI---QTSNIMGDEFT 84
N V A F Q+ + + +I Y A+++F ++ T+++ D+FT
Sbjct: 54 NLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFT 113
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------CTV----- 132
++ + + LG + + K NALIDMY K C V
Sbjct: 114 FPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMS 173
Query: 133 ----------------------------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
+WTTMI G G ALD+F +
Sbjct: 174 HRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFRE 233
Query: 159 MLRASIKPDEVAYVGVLSA 177
M I+PDE++ + VL A
Sbjct: 234 MQMVGIEPDEISIIAVLPA 252
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 114/192 (59%), Gaps = 15/192 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M +++IS+T +VSGY Q+D AR F Q ++D +LWT+MI+ ++ F
Sbjct: 200 AVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSF 259
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EAL LF+++Q + D+FT+V++LT AN+GAL+ GEWI Y + +K D G AL
Sbjct: 260 EEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTAL 319
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I+MY KC WT +I GLA +G KAL++F +M R+ KPD
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 169 VAYVGVLSARTH 180
+ ++GVLSA H
Sbjct: 380 ITFIGVLSACCH 391
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + +++ Y + D AR+ FD+MP+R VLW M+ Y+R RF A+ L +++
Sbjct: 80 DAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME 139
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ D T+V+ +TA + G L LG I +Y+D + NAL+DMY K
Sbjct: 140 SGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMD-GVFGFSLPVANALLDMYTKNGYLE 198
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQ 158
VK +WT ++ G I+G DKA F Q
Sbjct: 199 EAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQ 237
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y VD + Q F +M +D WT +I G + +AL LF+E+Q
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
S D T + +L+A + G ++ G+
Sbjct: 372 RSKTKPDGITFIGVLSACCHGGLVDEGQ 399
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L + T + D ++ +++ Y +V AR FD+MP R+ V W+ M++GY++ R
Sbjct: 266 LVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL LF +Q + D+ +V +L A A LG LE G+W+ Y+ N ++ +F G AL+
Sbjct: 326 EALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALV 385
Query: 125 DMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +K WTTMI GLA+ G G +AL++FSQM R +KPD++
Sbjct: 386 DMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDI 445
Query: 170 AYVGVLSARTH 180
A++G L A TH
Sbjct: 446 AFIGALCACTH 456
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A + F M E++ + WTTMI G R EAL LF +++ +
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ + L A + G ++ G E + + K +K I ++D+
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 489
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A +M +M +KPD + + +++
Sbjct: 490 ----LARNGLLNEAREMVEKM---PMKPDALIWGALMAG 521
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L + T + D ++ +++ Y +V AR FD+MP R+ V W+ M++GY++ R
Sbjct: 266 LVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGR 325
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL LF +Q + D+ +V +L A A LG LE G+W+ Y+ N ++ +F G AL+
Sbjct: 326 EALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALV 385
Query: 125 DMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +K WTTMI GLA+ G G +AL++FSQM R +KPD++
Sbjct: 386 DMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDI 445
Query: 170 AYVGVLSARTH 180
A++G L A TH
Sbjct: 446 AFIGALCACTH 456
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A + F M E++ + WTTMI G R EAL LF +++ +
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ + L A + G ++ G E + + K +K I ++D+
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 489
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A +M +M +KPD + + +++
Sbjct: 490 ----LARNGLLNEAREMVEKM---PMKPDALIWGALMAG 521
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y QVD AR+ FDQM RD V W+ MI GY + +R REAL LF E+Q +NI
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+E T+VSIL++ A LGALE G+W+ +I K ++K + G AL+D Y KC
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
VK +WT +I GLA +G G KAL+ F ML +++P++V ++GVLSA +H
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 15/171 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y N +V++AR+ FD+M ER+ W +M GY + + E + LF E+ +I D
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFD 224
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK---- 133
E T+VS+LTA L LELGEWI Y+++ +K + +L+DMY KC T +
Sbjct: 225 EVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD 284
Query: 134 -------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G + + +ALD+F +M +A+I P+E+ V +LS+
Sbjct: 285 QMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSS 335
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A F Q+ E D + MI G+ EA+ LF+E+ +++ DEFT IL
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKFT 135
+ L AL GE I I K + F N LI MY C V+ T
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVR-T 192
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +M G SGN ++ + +F +ML I+ DEV V VL+A
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTA 234
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V+ + + F +MP ++ + WT +I G + ++AL F + N+
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424
Query: 80 GDEFTIVSILTARANLGALELG 101
++ T + +L+A ++ G ++ G
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEG 446
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+IS+ +++SGY+ VD A+ FD MPE+D V W++MI GY + + F E L LFQE+Q
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
S DE T+VS+++A A L ALE G+W+ YI +N + ++ G LIDMY KC
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW +I+GLA++G + +LDMFS M + + P+E+ ++GVL A
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620
Query: 180 H 180
H
Sbjct: 621 H 621
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
I+ M + +I+ +++ + R V A + FD+M E+D V W+ +I + + + E
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F + +M DE VS L+A ANL + +G+ I + K ++ I NALI
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 419
Query: 126 MYCKC-----------------------------------TVK-----------FTWTTM 139
MY KC K +W++M
Sbjct: 420 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 479
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A + D+ L +F +M + KPDE V V+SA
Sbjct: 480 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+IS+ +++SGY+ VD A+ FD MPE+D V W++MI GY + + F E L LFQE+Q
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
S DE T+VS+++A A L ALE G+W+ YI +N + ++ G LIDMY KC
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW +I+GLA++G + +LDMFS M + + P+E+ ++GVL A
Sbjct: 426 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 485
Query: 180 H 180
H
Sbjct: 486 H 486
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
I+ M + +I+ +++ + R V A + FD+M E+D V W+ +I + + + E
Sbjct: 165 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F + +M DE VS L+A ANL + +G+ I + K ++ I NALI
Sbjct: 225 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 284
Query: 126 MYCKC-----------------------------------TVK-----------FTWTTM 139
MY KC K +W++M
Sbjct: 285 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 344
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A + D+ L +F +M + KPDE V V+SA
Sbjct: 345 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D R+ F+ + + +W MI Y++ N A TL++ + ++ + D +T ++
Sbjct: 27 HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86
Query: 91 ARANLGALELGEW----IKTYIDKNKVKNDIFAGNALIDMYCKCTV-------------- 132
A ++ EW + ++ K +D++ N LI+ + C+
Sbjct: 87 A----CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVL 142
Query: 133 -KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+W +++ G GN ++A ++ QM SI
Sbjct: 143 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI 175
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+T++++GY VD AR+ F+ MPER+ V W MI Y++ NR EA
Sbjct: 177 VFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEA 236
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF ++ N++ D+F S+L+A LGALE G+WI YI+K+ ++ D +IDM
Sbjct: 237 FALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDM 296
Query: 127 YCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC +W MI GLA+ G G+ A+++F +M R + PD + +
Sbjct: 297 YCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITF 356
Query: 172 VGVLSARTHN 181
V VLSA H+
Sbjct: 357 VNVLSACAHS 366
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 16 VISYTAIV-SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
VI + AI SG +N A + FD++P D ++ T+ GYLR R + ++ +
Sbjct: 58 VIKFCAISKSGDLN-----YALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRML 112
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
++ ++FT ++ A A+E G+ I ++ K D F+ N LI MY V F
Sbjct: 113 HKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMY----VNF 168
Query: 135 -------------------TWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGV 174
+WT++I G + G DKA ++F M R S+ + + V
Sbjct: 169 QSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYV 228
Query: 175 LSARTH 180
S R H
Sbjct: 229 QSNRLH 234
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y ++ A + F+++P++ W MI G + A+ LF+E++ +
Sbjct: 291 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 350
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYI 108
D T V++L+A A+ G +E G+ Y+
Sbjct: 351 PDGITFVNVLSACAHSGLVEEGKHYFQYM 379
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y QVD AR+ FD+M +RD V W+ MI GY + +R +EAL LF E+Q N+
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK- 133
+E T+VS+L + A LGA E G+W+ YI K K+K + G LID Y KC +V+
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
FTWT +I GLA +G G AL+ FS ML +KP++V ++GVLSA +H
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 15/169 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y N Q+ +AR FD MPER V W +M+ GY + + E + LF++I I D
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFD 221
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK---- 133
+ T++S+L A L LE+GE I YI ++ + +LIDMY KC T +
Sbjct: 222 DVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281
Query: 134 -------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
W+ MI G A + +AL++F +M + ++ P+EV V VL
Sbjct: 282 EMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVL 330
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A F+ + + + + MI G AL LF+++ ++ D+FT S+L A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTW 136
+ + AL GE + I K+ K++ F N LI MY C W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+M+ G +G D+ + +F ++L I+ D+V + VL A
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMA 231
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 112/176 (63%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y +AR F++MPE++ W MI+G++ + + EAL+LF E+Q S +
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK----- 133
GD+ T+ S+L A +LGALELG+W+ YI+K K++ D+ G AL+DMY KC +++
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TWT +IVGLA+ G G KAL++F +M + +KPD + +VGVL+A +H
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+M + V W TMI Y + + EA+ LF+ ++ +++ +E T+V++LTA A
Sbjct: 191 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACAR 250
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
LE + + YID+ + +AL+D+YCKC F W M
Sbjct: 251 SRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIM 310
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I G + ++AL +F++M + +K D+V +L A TH
Sbjct: 311 INGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+Q+P ++I GY N R+A+ +Q + + D FT S+ +
Sbjct: 93 ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKS--- 149
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CKCTVK-------------FTWTTM 139
G L G+ + + K +D + N L++MY C C V +W TM
Sbjct: 150 CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 209
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I A +A+ +F +M AS+KP+E+ V VL+A
Sbjct: 210 IGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F +MPE+D + WT +I G + +AL LF E+Q
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S + D T V +L A ++ G + G + + +K ++ I ++DM
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM------- 485
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G +A D+ M A PD VG+LSA R H
Sbjct: 486 ---------LGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSACRIH 521
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F N+DV+++TA+++GY QV +ARQ FD+MPE++ V W+ MI GY ++ FREA
Sbjct: 145 LFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREA 204
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++Q + + IV LTA A LGAL+ G WI Y+D+N++ D G ALIDM
Sbjct: 205 LELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDM 264
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F +T++I GLA G+ A++MF++M + P+EV +
Sbjct: 265 YAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTF 324
Query: 172 VGVLSA 177
+ +LSA
Sbjct: 325 ICLLSA 330
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I TA++ Y V+ A + FD+M +RD +T++I G A+ +F +Q
Sbjct: 254 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 313
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ +E T + +L+A + +G +E G
Sbjct: 314 NEGVCPNEVTFICLLSACSRVGLVEEG 340
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 54/219 (24%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQ--CFDQMPERDYVLWTTMIDGYLRVNRFR 64
+F +IS+ A+ + Q DI+ F +P R +W TM+ +
Sbjct: 17 LFDPFAAGRIISFCAVSA------QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPA 70
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L+L++ + ++ + + +T +L A A L L G + + + F N L+
Sbjct: 71 TVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLL 130
Query: 125 DMYCKCTV----------------------------------------------KFTWTT 138
+Y C +W+
Sbjct: 131 HLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSA 190
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G A G +AL++F+ M A +P+ A VG L+A
Sbjct: 191 MITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTA 229
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F N+DV+++TA+++GY QV +ARQ FD+MPE++ V W+ MI GY ++ FREA
Sbjct: 170 LFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREA 229
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++Q + + IV LTA A LGAL+ G WI Y+D+N++ D G ALIDM
Sbjct: 230 LELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDM 289
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F +T++I GLA G+ A++MF++M + P+EV +
Sbjct: 290 YAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTF 349
Query: 172 VGVLSA 177
+ +LSA
Sbjct: 350 ICLLSA 355
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I TA++ Y V+ A + FD+M +RD +T++I G A+ +F +Q
Sbjct: 279 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ +E T + +L+A + +G +E G
Sbjct: 339 NEGVCPNEVTFICLLSACSRVGLVEEG 365
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 78/219 (35%), Gaps = 54/219 (24%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQ--CFDQMPERDYVLWTTMIDGYLRVNRFR 64
+F +IS+ A+ + Q DI+ F +P R +W TM+ +
Sbjct: 42 LFDPFAAGRIISFCAVSA------QGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPA 95
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L+L++ + ++ + + +T +L A A L L G + + + F N L+
Sbjct: 96 TVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLL 155
Query: 125 DMYCKCTV----------------------------------------------KFTWTT 138
+Y C +W+
Sbjct: 156 HLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSA 215
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G A G +AL++F+ M A +P+ A VG L+A
Sbjct: 216 MITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTA 254
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M DV+++ +++ G+ +D A+ FD+MP+R+ V W +MI G++R RF++A
Sbjct: 183 IFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDA 242
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+E+Q ++ D FT+VS+L A A LGA E G WI YI +N+ + + ALIDM
Sbjct: 243 LDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDM 302
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC W +MI+GLA +G ++A+D+FS++ R+ ++PD V++
Sbjct: 303 YCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSF 362
Query: 172 VGVLSARTHN 181
+GVL+A H+
Sbjct: 363 IGVLTACAHS 372
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQT 75
I TA++ Y ++ F+ P++ W +MI G L N F E A+ LF E++
Sbjct: 294 IVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG-LANNGFEERAMDLFSELER 352
Query: 76 SNIMGDEFTIVSILTARANLGALE 99
S + D + + +LTA A+ G +
Sbjct: 353 SGLEPDSVSFIGVLTACAHSGEVH 376
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 118/193 (61%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ A++ GY +D AR+ FD MPE+D V WT MI GY + R+++
Sbjct: 109 KMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQD 168
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNA 122
L LF+ +QT SN+ +E T+VS+L+A ANL ALE G W+ +IDK+K + N+ G A
Sbjct: 169 TLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAA 228
Query: 123 LIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC VK W +I LA++GN ++D F QM R KP+
Sbjct: 229 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPN 288
Query: 168 EVAYVGVLSARTH 180
++ +VGVL+A +H
Sbjct: 289 DITFVGVLTACSH 301
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 23/189 (12%)
Query: 6 EIFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+FG+ DV+S+ ++ GY+ +++ A++ FD+MP R+ V W+TM+ GY
Sbjct: 13 EVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELD 72
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--------- 115
A +F + I + T S++T A G L L + D+ V+N
Sbjct: 73 VAREMFDRMPA--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRNLVSWNAMLR 127
Query: 116 ------DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDE 168
D+ L D+ + V +WT MI G A +G L++F M ++++P+E
Sbjct: 128 GYSVNSDMDGARELFDVMPEKDV-VSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 186
Query: 169 VAYVGVLSA 177
V V VLSA
Sbjct: 187 VTMVSVLSA 195
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+T ++ GY + + A FD+MP+R+ V W+ +I GY+++ + +A
Sbjct: 224 LFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKA 283
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+Q + + DE + ++L+A A LGAL+ G W+ YIDK+ +K D ALIDM
Sbjct: 284 LELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDM 343
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F W++MI GLA+ G+KA+++F++M+ I+P E+ Y
Sbjct: 344 YSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITY 403
Query: 172 VGVLSARTHN 181
+ +L+A TH+
Sbjct: 404 INILAACTHS 413
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+ R+ FD++ D V W +I+GY++ EA LF E+ +++ +TI +L A
Sbjct: 189 VVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVS--WTI--MLVGYA 244
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153
+ G L + L D K + +W+ +I G G KAL
Sbjct: 245 DAGFLS-------------------EASCLFDEMPKRNL-VSWSALIKGYIQIGCYSKAL 284
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
++F +M A +K DEV +LSA
Sbjct: 285 ELFKEMQVAKVKMDEVIVTTLLSA 308
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
TA++ Y ++D+A + F + ++ +W++MI G L ++ F E A+ LF ++ I
Sbjct: 338 TALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG-LAMHSFGEKAIELFAKMIECGI 396
Query: 79 MGDEFTIVSILTARANLGALELG 101
E T ++IL A + G +++G
Sbjct: 397 EPSEITYINILAACTHSGLVDVG 419
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 19/155 (12%)
Query: 24 SGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN--IMG 80
+ + N ++ A++ FD + R+ ++TTMI Y REA + + +
Sbjct: 74 ASFDNLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYP 133
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK-- 133
++FT + +A + + G+ + K + + + N+L+D Y K V+
Sbjct: 134 NDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRV 193
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +I G SG+ D+A +F +M
Sbjct: 194 FDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEM 228
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 121/194 (62%), Gaps = 18/194 (9%)
Query: 2 GFTLEIFGTMKNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GF E++ + D++++ +++ G +VD +R+ FD+MP R+ V W +MI GY+
Sbjct: 174 GFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYV 233
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R R REAL LF ++Q I EFT+VS+L A A LGAL+ GEWI YI KN + ++
Sbjct: 234 RNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVI 293
Query: 119 AGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
++IDMYCKC +K +W TMI+GLA++G ++A+ +FS++ ++
Sbjct: 294 VTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSN 353
Query: 164 IKPDEVAYVGVLSA 177
++PD+V +VGVL+A
Sbjct: 354 LRPDDVTFVGVLTA 367
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 47/193 (24%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ-TSNIMGDEFTIVSILT 90
++ A F Q+ + W T+I G+ + + A++LF ++ S++ T S+
Sbjct: 74 INYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFK 133
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FT 135
A A LG G + + K ++ D F N +I MY C
Sbjct: 134 AYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVA 193
Query: 136 WTTMIVGLAISGNGD-------------------------------KALDMFSQMLRASI 164
W +MI+GLA G D +ALD+F QM I
Sbjct: 194 WNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERI 253
Query: 165 KPDEVAYVGVLSA 177
KP E V +L+A
Sbjct: 254 KPSEFTMVSLLNA 266
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++++ ++ ++ GY +VD+A F+QMP RD + WTTMI+ Y + RFREA
Sbjct: 168 LFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREA 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F E+ I DE T+ ++++A A+LGAL+LG+ I YI ++ D++ G+ALIDM
Sbjct: 228 LGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDM 287
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F W ++I GLA+ G ++AL MF +M R IKP+ V +
Sbjct: 288 YAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTF 347
Query: 172 VGVLSARTH 180
V VLSA H
Sbjct: 348 VSVLSACNH 356
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ V T++V Y + +++ + + FD+MPERD WTTM+ G +RV A LF
Sbjct: 112 DSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDM 171
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N+ T +++ A L +++ E + + +
Sbjct: 172 MPDRNLA----TWNTLIDGYARLREVDVAELLFNQMPARDI------------------- 208
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+WTTMI + + +AL +F++M + I PDEV V+SA H
Sbjct: 209 -ISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAH 255
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N DV +A++ Y +D + F ++ E++ W ++I+G EAL +F +
Sbjct: 275 NLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDK 334
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
++ I + T VS+L+A + G +E G
Sbjct: 335 MEREKIKPNGVTFVSVLSACNHAGLIEEG 363
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 111/190 (58%), Gaps = 30/190 (15%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M NK ++S+T ++ FD+MP++D V W MI GY+ NR +E
Sbjct: 236 KLFDSMTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKE 280
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q NI DE T+VS L+A + LGAL++G WI YI+K+++ ++ G ALID
Sbjct: 281 ALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALID 340
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT +I GLA+ GN A+ FS+M+ S+ PDEV
Sbjct: 341 MYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVT 400
Query: 171 YVGVLSARTH 180
++G+LSA H
Sbjct: 401 FLGLLSACCH 410
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 31/196 (15%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A++ ++ +D AR+ FD+ RD V W +MI+GY+R EAL ++E
Sbjct: 111 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 170
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
++ I DE T++ ++++ A L L+LG YI++N +K + NAL+DMY KC
Sbjct: 171 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 230
Query: 131 --------------------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLR 161
T+ F W MI G + G +AL +F++M
Sbjct: 231 LESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA 290
Query: 162 ASIKPDEVAYVGVLSA 177
+I PDEV V LSA
Sbjct: 291 MNINPDEVTMVSCLSA 306
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
W I G+L REA+ L++ + Q D +T + A A L + +G I ++
Sbjct: 46 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 105
Query: 109 DKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKAL 153
+DIF NA+I + C V+ +W +MI G G +AL
Sbjct: 106 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 165
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+ + +M IKPDEV +GV+S+
Sbjct: 166 NFYREMKVEGIKPDEVTMIGVVSS 189
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A Q F ++P R+ + WT +I G A+ F E+ +++M
Sbjct: 336 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 395
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G +E G
Sbjct: 396 PDEVTFLGLLSACCHGGLVEEG 417
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 16/183 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+S+ +++SGY+ + ++A + FD++P R+ V WT+MI GY + + F+EA+ LF+E+
Sbjct: 76 RDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM 135
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
Q D TI +L+A + GAL G WI Y ++N ++ D+ A NALI MY KC
Sbjct: 136 QIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDI 195
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
F+W+ +I GLA++G DKAL +FSQM + + I+P+E+ ++GVL A
Sbjct: 196 QKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCA 255
Query: 178 RTH 180
H
Sbjct: 256 CNH 258
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 113/193 (58%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ F K+++ + ++ + +++ +Q F MP+RD V W +MI G+ R+ +
Sbjct: 245 YAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQ 304
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
++EALT F E++ S + + T++S L+A A+ GAL+ G WI Y+DKN + D ++
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSS 364
Query: 123 LIDMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC V+ FTWT+++ GLA+ G G+KAL FS+M A ++PD
Sbjct: 365 LIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 168 EVAYVGVLSARTH 180
+V VGVLSA H
Sbjct: 425 DVTMVGVLSACAH 437
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ V RQ FD+M + VLWT +I Y+ V +AL LF+ ++ +
Sbjct: 131 ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTP 190
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF- 134
D I ++++A LG L + + + +I+K+ ++ D F + LI Y +C +F
Sbjct: 191 DMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 135 ----------------------------------------TWTTMIVGLAISGNGDKALD 154
+W +MI G A G +AL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
F +M + + P+ + + LSA
Sbjct: 311 WFHEMEFSGVSPNALTLLSTLSA 333
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+D ++++ Y +D A Q F++ RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
++ + + D+ T+V +L+A A+ G L+ G W ++K
Sbjct: 416 MKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 113/193 (58%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ F K+++ + ++ + +++ +Q F MP+RD V W +MI G+ R+ +
Sbjct: 245 YAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQ 304
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
++EALT F E++ S + + T++S L+A A+ GAL+ G WI Y+DKN + D ++
Sbjct: 305 YQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSS 364
Query: 123 LIDMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC V+ FTWT+++ GLA+ G G+KAL FS+M A ++PD
Sbjct: 365 LIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 168 EVAYVGVLSARTH 180
+V VGVLSA H
Sbjct: 425 DVTMVGVLSACAH 437
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ V RQ FD+M + VLWT +I Y+ V +AL LF+ ++ +
Sbjct: 131 ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTP 190
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF- 134
D + ++++A LG L + + + +I+K+ ++ D F + LI Y +C +F
Sbjct: 191 DMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 135 ----------------------------------------TWTTMIVGLAISGNGDKALD 154
+W +MI G A G +AL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
F +M + + P+ + + LSA
Sbjct: 311 WFHEMEFSGVSPNALTLLSTLSA 333
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+D ++++ Y +D A Q F++ RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
++ + + D+ T+V +L+A A+ G L+ G W ++K
Sbjct: 416 MKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ + ++ GY+ ++++AR FD+MP+R V W MI GY + F+EA+ +F+E+Q
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 228
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK 133
+ + + T+VS+L A + LGALELG+W+ Y +N + D G+ALIDMY KC +++
Sbjct: 229 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 288
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW+T+I GLA+ G LD F M RA + P +V Y+G+LSA +
Sbjct: 289 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 348
Query: 180 H 180
H
Sbjct: 349 H 349
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 48/84 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A Q F+ +P+R+ V W+T+I G R ++ L F++++ + +M
Sbjct: 275 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 334
Query: 80 GDEFTIVSILTARANLGALELGEW 103
+ T + +L+A ++ G + G W
Sbjct: 335 PSDVTYIGLLSACSHAGLVNEGRW 358
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 115/195 (58%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G E+F M+ ++V+S+T++VSGY V+ A+ FD MPE++ W MI GY +
Sbjct: 238 VGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQN 297
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R +AL LF+E+QT+++ +E T+V +L A A+LGAL+LG WI + + K+ G
Sbjct: 298 RRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIG 357
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALIDMY KC + F +W +I G A++G +AL++F++M+
Sbjct: 358 TALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFG 417
Query: 166 PDEVAYVGVLSARTH 180
P+EV +GVLSA H
Sbjct: 418 PNEVTMIGVLSACNH 432
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 24/177 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M + +S+TA++ GY + AR+ FD+M +RD V + MIDGY+++
Sbjct: 176 LGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKM 235
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
A LF E++ N++ + S+++ G +E + + + + V
Sbjct: 236 GCVGLARELFNEMRERNVV----SWTSMVSGYCGNGDVENAKLMFDLMPEKNV------- 284
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW MI G + AL++F +M AS++P+EV V VL A
Sbjct: 285 -------------FTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPA 328
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI--QTSNIMGDEFTIVSIL 89
++ AR+ F+ RD L +MI + +F + TLF+++ Q D +T +++
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KF 134
A A G + + KN V D++ AL+DMY K V K
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 135 TWTTMIVGLAISGNGDKALDMFSQM 159
+WT +IVG A G+ +A +F +M
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEM 217
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A+ F+ M ER+ W +I+G+ +EAL +F +
Sbjct: 358 TALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFG 417
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T++ +L+A + G +E G
Sbjct: 418 PNEVTMIGVLSACNHCGLVEEG 439
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 116/197 (58%), Gaps = 19/197 (9%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F +IF + D+ S+ +I++ + VD+AR FD MPER+ + W+ MI+G+++
Sbjct: 134 FARQIFDEIAQPDLPSWNSIINASVKVGLVDVARGLFDVMPERNVITWSCMINGFVKCGE 193
Query: 63 FREALTLFQEIQ---TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
++EAL LF+E+Q ++ +EFT+ S+L+A LGALE G+W YI+K ++K DI
Sbjct: 194 YKEALALFREMQMLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVL 253
Query: 120 GNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G +LIDMY KC W+ MI GLA+ G G++ L++FS+M+
Sbjct: 254 GTSLIDMYAKCGSIDRARLVFDNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQG 313
Query: 164 IKPDEVAYVGVLSARTH 180
++P+ V ++ VL A H
Sbjct: 314 LRPNNVTFLAVLYACVH 330
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 105/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ +++ + +V AR FD+MPER+ V W+ M++GY++ REAL +F ++Q
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ D+ +V +L A A LGALE G+W+ Y+ N ++ +F G AL+DMY KC
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
WTTMI GLA+ G G +L +FSQM + +KPD++A++G L A T
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337
Query: 180 H 180
H
Sbjct: 338 H 338
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +V + + F+ M +++ + WTTMI G R ++LTLF ++++S +
Sbjct: 264 TALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVK 323
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ + L A + G ++ G E + ++ +K I ++D+
Sbjct: 324 PDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDL------------ 371
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G +A DM +M +KPD + + +++
Sbjct: 372 ----LARNGLLSEARDMVEKM---PMKPDALIWGALMAG 403
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F M ++V S+ ++SGY+ ++ AR+ F + P ++ V W MI GY
Sbjct: 190 MELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHA 249
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RF E L LF+++Q + + D T+VS+L+A A++GAL GEW+ YIDKN + D F
Sbjct: 250 GRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVA 309
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC +++ TW ++I GL+ G+G AL +FS+ML K
Sbjct: 310 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 369
Query: 166 PDEVAYVGVLSA 177
P+EV +V VLSA
Sbjct: 370 PNEVTFVCVLSA 381
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 64/170 (37%), Gaps = 55/170 (32%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M +DV+S+ A++S Y R +++A FD+M ER+ W MI GY+ V EA +F
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVF 228
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E VKN +
Sbjct: 229 GE--------------------------------------TPVKNVV------------- 237
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W MI G + +G + L +F M A +KPD V VLSA H
Sbjct: 238 ----SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAH 283
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A VS + + + A F ++P + +W T+I Y ALT+F ++ ++++
Sbjct: 47 ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
D++T L + + +E G I ++ K + +D+F N LI +Y C
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASC 156
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A + F+ +D W ++I G + AL +F E+
Sbjct: 310 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 369
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+E T V +L+A + G L+ G E + + ++ I ++D+
Sbjct: 370 PNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDL 417
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 121/190 (63%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++ G+ + V A++ FD+ ERD + W++MI Y + + E
Sbjct: 192 DLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNE 251
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q +N++ D+ T+VS+L+A ++GAL +G+ I I++N+++ D+ G +L+D
Sbjct: 252 ALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVD 311
Query: 126 MYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +++ F W+ MI+GLA G G+ ALD FS+M+ IKP++V
Sbjct: 312 MYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVT 371
Query: 171 YVGVLSARTH 180
++GVLSA +H
Sbjct: 372 FIGVLSACSH 381
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARA 93
AR FD++P D +W TMI YL +E+++LF +++ + D +++ ++ A
Sbjct: 57 ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
L G+ + T + K + +D+F ALI+MY K
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAK 152
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y +D + + F+ M RD W+ MI G AL F ++ + +I
Sbjct: 307 TSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIK 366
Query: 80 GDEFTIVSILTARANLGALELG 101
++ T + +L+A +++G ++ G
Sbjct: 367 PNDVTFIGVLSACSHIGLVDEG 388
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDY--VLWTTMIDGYLRVNRFREALTLFQE 72
D+I T ++ Y V+ AR FD M ER+ V W TMI Y++ F A+++FQ+
Sbjct: 64 DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+Q+ N+ E T+VS+L+A A+LGAL++GEWI YI ++K D+ GNALIDMYCKC
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 183
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F W ++IVGL ++G G++A+ F M + IKPD V +VG+LS
Sbjct: 184 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 178 RTHN 181
+H+
Sbjct: 244 CSHS 247
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L + + ++++ + + IL + A G +LGE I K + D+ L+D
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 127 YCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y K + TW TMI G A+ MF QM ++KP EV
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134
Query: 170 AYVGVLSARTH 180
V +LSA H
Sbjct: 135 TMVSLLSACAH 145
Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 7 IFGTMKNK----DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
I G ++ K DV+ A++ Y ++ A F + ++ W ++I G R
Sbjct: 155 IHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 214
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
EA+ F ++ I D T V IL+ ++ G L G+
Sbjct: 215 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 72/183 (39%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + DV+ TA++ VD AR+ FD MP+RD+V W M+ GY+RV R REAL
Sbjct: 182 FAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREAL 241
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF E+Q + + E T+VS+LTA A +GALE G W+ +Y+ ++ + G AL+DMY
Sbjct: 242 GLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMY 301
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC V +TWT+ + GLA++G G++ L++F +M A ++P+ V +V
Sbjct: 302 SKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFV 361
Query: 173 GVL 175
VL
Sbjct: 362 AVL 364
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V ++ + F+ M ER+ WT+ + G E L LF+ ++++ +
Sbjct: 295 TALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGME 354
Query: 80 GDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T V++L + G +E G + DK+KV+ + ++D+Y +
Sbjct: 355 PNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGR--------- 405
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D A+D + M ++P E + +L+A R HN
Sbjct: 406 -------AGRLDDAVDFINSM---PVEPHEGVWGALLNASRIHN 439
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 119/190 (62%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M DV+++ +I+ G +D A++ FD+MP+R+ V W +MI G++R RF++A
Sbjct: 183 LFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDA 242
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+E+Q ++ D FT+VS+L A A LGA E G WI YI +N+ + + ALIDM
Sbjct: 243 LEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDM 302
Query: 127 YCKC--------------TVKFT-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC T + + W +MI+GLA +G ++A+D+F ++ R ++PD V++
Sbjct: 303 YCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSF 362
Query: 172 VGVLSARTHN 181
+GVL+A H+
Sbjct: 363 IGVLTACAHS 372
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN--IMGDEFTIVSILTARANLG 96
F ++ ++ +W T+I G+ R + A+++F ++ S+ + T S+ A A+LG
Sbjct: 81 FTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLG 140
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CKCTVK-------------FTWTTMIV 141
G + + K +++D F N ++ MY C C V+ W ++I+
Sbjct: 141 LARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIM 200
Query: 142 GLAISGNGDKALDMFSQM 159
GLA G D+A +F +M
Sbjct: 201 GLAKCGLIDQAQKLFDEM 218
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
I TA++ Y + + F+ P + W +MI G A+ LF E++ +
Sbjct: 294 IVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERT 353
Query: 77 NIMGDEFTIVSILTARANLGAL-ELGEWIKTYIDKNKVKNDI 117
+ D + + +LTA A+ G + + GE+ + +K ++ I
Sbjct: 354 GLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSI 395
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++ M KD++S TA+VSGY +V+IAR FD MPE+D V W+ MI GY+
Sbjct: 302 MEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 361
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N+ EAL+LF +Q I DE T++S+++A ANLG+L+ +WI +I + + +
Sbjct: 362 NQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHIC 421
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDM+ KC TWT+MI A+ G+G +L +F QM +
Sbjct: 422 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAE 481
Query: 166 PDEVAYVGVLSARTH 180
P+EV ++ +L A H
Sbjct: 482 PNEVTFLSLLYACCH 496
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 46/204 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ Y V R+ FD M RD V W M+D Y + ++EAL LF +++ S ++
Sbjct: 189 TALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV 248
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D+ + ++L A ++ L +G+ I +Y+ + + +ALI +Y C
Sbjct: 249 PDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKL 308
Query: 134 ----------------------------------------FTWTTMIVGLAISGNGDKAL 153
+W+ MI G S ++AL
Sbjct: 309 YNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEAL 368
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+F+ M I+ DE+ + V+SA
Sbjct: 369 SLFNGMQECGIRSDEITMLSVISA 392
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++A F++MP ++ + WT+MI + + +L LF++++ +E T +S+L A
Sbjct: 434 INLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYA 493
Query: 92 RANLGALELG 101
+ G + G
Sbjct: 494 CCHAGLVHEG 503
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 16/183 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIA-RQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
M +DV+S+ A++S Y R +++A R+ F + P ++ V W MI GY RF E L L
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVL 228
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F+++Q + + D T+VS+L+A A++GAL GEW+ YIDKN + D F AL+DMY K
Sbjct: 229 FEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSK 288
Query: 130 C-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C +++ TW ++I GL+ G+G AL +FS+ML KP+EV +V V
Sbjct: 289 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 348
Query: 175 LSA 177
LSA
Sbjct: 349 LSA 351
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 47/207 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A VS + + + A F ++P + +W T+I Y ALT+F ++ ++++
Sbjct: 47 ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D++T L + + +E G I ++ K + +D+F N LI +Y C
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166
Query: 131 -----------------------------------TVK--FTWTTMIVGLAISGNGDKAL 153
VK +W MI G + +G + L
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 226
Query: 154 DMFSQMLRASIKPDEVAYVGVLSARTH 180
+F M A +KPD V VLSA H
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAH 253
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A + F+ +D W ++I G + AL +F E+
Sbjct: 280 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 339
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+E T V +L+A + G L+ G E + + ++ I ++D+
Sbjct: 340 PNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDL 387
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++ M +D +S+ +++SG++ Q+ AR+ FD+MP R V WTTMI+GY R
Sbjct: 157 MSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARG 216
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +AL +F+E+Q I DE +++S+L A A LGALE+G+WI Y +K+ +
Sbjct: 217 GCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVF 276
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL++MY KC +W+TMI GLA G G A+ +F M +A +
Sbjct: 277 NALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVT 336
Query: 166 PDEVAYVGVLSARTH 180
P+ V +VGVLSA H
Sbjct: 337 PNGVTFVGVLSACAH 351
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 47/197 (23%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIV 86
N VD A F Q+ + + +I Y ++ A+T+F Q + T + D+FT
Sbjct: 51 NLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFP 110
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------- 130
++ + A L LG+ + ++ K K NALIDMY KC
Sbjct: 111 FVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTER 170
Query: 131 -----------TVKF-------------------TWTTMIVGLAISGNGDKALDMFSQML 160
V+ +WTTMI G A G AL +F +M
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 161 RASIKPDEVAYVGVLSA 177
I+PDE++ + VL A
Sbjct: 231 VVGIEPDEISVISVLPA 247
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E G +KN V + A+V Y +D A F+QM E+D + W+TMI G +
Sbjct: 265 EKSGFLKNAGV--FNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYA 322
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F+++Q + + + T V +L+A A+ G G Y D +V + I+
Sbjct: 323 AIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEG---LRYFDVMRVDYHL---EPQIE 376
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
Y C V L SG ++ALD +L+ ++PD + +LS+ R H+
Sbjct: 377 HY-GCLVDL--------LGRSGQVEQALDT---ILKMPMQPDSRTWNSLLSSCRIHH 421
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M K V+S+TA++SGY + A F+ MP ++ V W MI GY+ + F +A
Sbjct: 225 IFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQA 284
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F + D+ T++SIL+A A+LG+LE G+WI +YI KNK+ I GNALID
Sbjct: 285 LCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALID 344
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTM+ GLA++G +A+++F +M KPD+V
Sbjct: 345 MFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVI 404
Query: 171 YVGVLSARTH 180
++ VLSA TH
Sbjct: 405 FIAVLSACTH 414
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DVIS+ +++S Y+ R ++ A D+MPER+ V W +++ G +
Sbjct: 126 LGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKA 185
Query: 61 NRFREALTLFQEIQTSN------------IMGDEFTIVSILTARANLGALELGEWIKTYI 108
A ++F+++ N +GD SI + I Y
Sbjct: 186 GNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYA 245
Query: 109 DKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPD 167
+K+ A N M K V +W MI G + D+AL +F ML +PD
Sbjct: 246 TNGDLKS---AENIFNHMPVKNVV--SWNAMISGYVHNHEFDQALCVFHHMLINGECRPD 300
Query: 168 EVAYVGVLSARTH 180
+ + +LSA H
Sbjct: 301 QTTLISILSACAH 313
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
E + A + F++MPERD + W +MI Y+ + A+ L ++ NI+ T S++
Sbjct: 124 ENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIV----TWNSVV 179
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKF 134
+ G +EL + ++ ++N++ + N++I Y +
Sbjct: 180 CGLSKAGNMELAH---SVFEQMPLRNEV-SWNSMISGYVRIGDVRAAQSIFYQMPEKTVV 235
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+WT MI G A +G+ A ++F+ M ++ V++ ++S HN
Sbjct: 236 SWTAMISGYATNGDLKSAENIFNHMPVKNV----VSWNAMISGYVHN 278
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 12 KNKDVISYT---AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK +S A++ + V+ A++ F M +R + WTTM+ G + REA+
Sbjct: 329 KNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAIN 388
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMY 127
LF ++ D+ +++L+A + G +E G+ + + + +K I ++D+
Sbjct: 389 LFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLL 448
Query: 128 CKC-----TVKFT-----------WTTMIVGLAISGNGD 150
+ V+FT W T++ I GNGD
Sbjct: 449 GRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGD 487
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 116/190 (61%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F D S+ ++ GY+ AR+ F+ MP+RD V W+ MI+GY++ +RF+E
Sbjct: 193 VFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEG 252
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LFQ++ I +E +V+ L+A A+LGA+E G+WI+ Y+++ V+ + G ALIDM
Sbjct: 253 LGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDM 312
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +V+ W+ MI GLAI+G G AL++FSQM +KP+EV +
Sbjct: 313 YSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTF 372
Query: 172 VGVLSARTHN 181
+G+L+A +H+
Sbjct: 373 IGILNACSHS 382
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 47/196 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILT 90
+ AR F ++ + D + T+I Y +A+ + E+ ++S + D T +L
Sbjct: 85 IPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLK 144
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------------------ 132
A + + +L LGE I +++ K +++ N L+ MY C +
Sbjct: 145 ACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGAS 204
Query: 133 ----------------------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+W+ MI G + L +F M+ I
Sbjct: 205 WNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKI 264
Query: 165 KPDEVAYVGVLSARTH 180
+P+E V LSA H
Sbjct: 265 EPNESVLVNALSACAH 280
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 120/186 (64%), Gaps = 17/186 (9%)
Query: 13 NKDVISYTAIVSGYI-NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ DV +V Y R+ ++ AR+ FD+M +RD V W+ MI GY R+ R +A+ LF+
Sbjct: 168 DNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFR 227
Query: 72 EIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E+Q + DE T+VS+L+A +LGALELG+W+++YI+K KV+ + NALIDM+ KC
Sbjct: 228 EMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKC 287
Query: 131 -----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+K +WT++I GLA+ G G +A++ F +M+++ + PD+VA++G+L
Sbjct: 288 GDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLL 347
Query: 176 SARTHN 181
SA +H+
Sbjct: 348 SACSHS 353
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 19/153 (12%)
Query: 46 DYVLWTTMIDGYLRVNRFRE--ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103
D L+ T+I Y N + AL +++ + +++ ++FT +L A A +G L LG+
Sbjct: 98 DTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKS 157
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYC--KCTVKF--------------TWTTMIVGLAISG 147
+ + K ND+ N ++ MYC + ++F +W+ MI G A G
Sbjct: 158 VHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLG 217
Query: 148 NGDKALDMFSQM-LRASIKPDEVAYVGVLSART 179
A+D+F +M + +PDE+ V VLSA T
Sbjct: 218 RCSDAIDLFREMQIEGVCRPDEITMVSVLSACT 250
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
K V A++ + VD A + F M +R V WT++I G R EA+ F+E
Sbjct: 271 QKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEE 330
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ S ++ D+ + +L+A ++ G ++ G + Y D
Sbjct: 331 MIKSGVLPDDVAFIGLLSACSHSGLVDKG---REYFD 364
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + ++F M + V+S+T V+G + ++D AR FD+MP R+ V WT MI+GY++
Sbjct: 181 LDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKN 240
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R +EA LFQ +Q +N+ + FT+V +L A LG+LELG I Y +N K +F G
Sbjct: 241 QRPQEAFELFQRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLG 300
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALIDMY KC TW +MI L + G G +AL +F+QM A+++
Sbjct: 301 TALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVR 360
Query: 166 PDEVAYVGVLSA 177
PD + +VGVL A
Sbjct: 361 PDAITFVGVLFA 372
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 46/196 (23%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
++VD A FDQ+ W MI Y ++AL L+ + D+FT ++
Sbjct: 78 QKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVI 137
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--F 134
A + AL+ G+ + + K D F N L+D+Y KC V+
Sbjct: 138 KACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVV 197
Query: 135 TWTTMIVGLAISGNGD-------------------------------KALDMFSQMLRAS 163
+WTT + GL G D +A ++F +M A+
Sbjct: 198 SWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLAN 257
Query: 164 IKPDEVAYVGVLSART 179
++P+ VG+L A T
Sbjct: 258 VRPNGFTLVGLLRACT 273
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ + ++ GY+ ++++AR FD+MP+R V W MI GY + F+EA+ +F+E+Q
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ + + T+VS+L A + LGALELG+W+ Y +N + D G+ALIDMY KC
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW+T+I GLA+ G LD F M RA + P +V Y+G+LSA +
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371
Query: 180 H 180
H
Sbjct: 372 H 372
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 48/84 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A Q F+ +P+R+ V W+T+I G R ++ L F++++ + +M
Sbjct: 298 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 357
Query: 80 GDEFTIVSILTARANLGALELGEW 103
+ T + +L+A ++ G + G W
Sbjct: 358 PSDVTYIGLLSACSHAGLVNEGRW 381
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M K V+S+TA++SGY + A F+ MP ++ V W MI GY+ + F +A
Sbjct: 161 IFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQA 220
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F + D+ T++SIL+A A+LG+LE G+WI +YI KNK+ I GNALID
Sbjct: 221 LCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALID 280
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTM+ GLA++G +A+++F +M KPD+V
Sbjct: 281 MFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVI 340
Query: 171 YVGVLSARTH 180
++ VLSA TH
Sbjct: 341 FIAVLSACTH 350
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 18/193 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DVIS+ +++S Y+ R ++ A D+MPER+ V W +++ G +
Sbjct: 62 LGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKA 121
Query: 61 NRFREALTLFQEIQTSN------------IMGDEFTIVSILTARANLGALELGEWIKTYI 108
A ++F+++ N +GD SI + I Y
Sbjct: 122 GNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYA 181
Query: 109 DKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPD 167
+K+ A N M K V +W MI G + D+AL +F ML +PD
Sbjct: 182 TNGDLKS---AENIFNHMPVKNVV--SWNAMISGYVHNHEFDQALCVFHHMLINGECRPD 236
Query: 168 EVAYVGVLSARTH 180
+ + +LSA H
Sbjct: 237 QTTLISILSACAH 249
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
E + A + F++MPERD + W +MI Y+ + A+ L ++ NI+ T S++
Sbjct: 60 ENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIV----TWNSVV 115
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKF 134
+ G +EL + ++ ++N++ + N++I Y +
Sbjct: 116 CGLSKAGNMELAH---SVFEQMPLRNEV-SWNSMISGYVRIGDVRAAQSIFYQMPEKTVV 171
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+WT MI G A +G+ A ++F+ M ++ V++ ++S HN
Sbjct: 172 SWTAMISGYATNGDLKSAENIFNHMPVKNV----VSWNAMISGYVHN 214
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ A++ F M +R + WTTM+ G + REA+ LF ++ D+ +++L+A
Sbjct: 288 VENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSA 347
Query: 92 RANLGALELGE 102
+ G +E G+
Sbjct: 348 CTHGGLVEEGK 358
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++ M KD++S TA+V GY + +IAR FD MPE+D V W+ MI GY
Sbjct: 222 MEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADS 281
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N+ EAL+LF ++Q I DE T++S+++A ANLG+L+ +WI +I N + +
Sbjct: 282 NQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHIC 341
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDM+ KC TWT+MI A+ G+G AL +F QM ++
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVE 401
Query: 166 PDEVAYVGVLSARTH 180
P+EV ++ +L A H
Sbjct: 402 PNEVTFLNLLYACCH 416
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 46/204 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V AR+ FD M RD V W M+D Y + ++EAL F +++ S ++
Sbjct: 109 TALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVL 168
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+ + ++L+A ++ L G+ I +Y+ + + + +ALI++Y C
Sbjct: 169 SDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKL 228
Query: 133 -----------------------KF----------------TWTTMIVGLAISGNGDKAL 153
KF +W+ MI G A S ++AL
Sbjct: 229 YNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEAL 288
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+F+ M I+PDEV + V+SA
Sbjct: 289 SLFNDMQECGIRPDEVTMLSVISA 312
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 41/70 (58%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++A F++MP+++ + WT+MI + + AL LF++++ + +E T +++L A
Sbjct: 354 INLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYA 413
Query: 92 RANLGALELG 101
+ G + G
Sbjct: 414 CCHAGLVHEG 423
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 109/187 (58%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +DVI++TA+++GY+ V+ AR+ FDQMPER+ V W+ MI GY+ + FRE
Sbjct: 164 KLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFRE 223
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF ++Q + + + IV LTA + LG+L+ G WI Y+D+N + D G AL+D
Sbjct: 224 ALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVD 283
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC F +T++I GLA G A+ +F +M + P+EV
Sbjct: 284 MYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVT 343
Query: 171 YVGVLSA 177
++ VLSA
Sbjct: 344 FICVLSA 350
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 50/87 (57%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+V Y ++IA F++MP++D +T++I G + +A+ LF +Q
Sbjct: 274 DRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQ 333
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ ++ +E T + +L+A + +G ++ G
Sbjct: 334 SEKVIPNEVTFICVLSACSRMGLVDEG 360
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 23/183 (12%)
Query: 15 DVISYTAIVSGYINREQVDI--ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D + I+S + DI A + F +P R +W T+I ++ N AL+L++
Sbjct: 41 DPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKN 100
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--- 129
+ + + + +T +L A + + L + K ++ F N LI +Y
Sbjct: 101 MLQTGFLPNNYTFSFVLRACTDNSPVGLAS--HAQVIKLGWESYDFVLNGLIHLYANWSS 158
Query: 130 ------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
C TWT +I G SG+ + A ++F QM + +EV++ +++
Sbjct: 159 VEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQM----PERNEVSWSAMITG 214
Query: 178 RTH 180
H
Sbjct: 215 YVH 217
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVIS-YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++ +IS + A++SG+ V++AR+ FD+M ERD + W+ MIDGY++ F
Sbjct: 225 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 284
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL +F ++Q I +F + S+L+A ANLGAL+ G WI TY +N ++ D G +L+
Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 344
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W MI GLA+ G + A+D+FS+M I P+E+
Sbjct: 345 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEI 401
Query: 170 AYVGVLSARTH 180
+VGVL+A H
Sbjct: 402 TFVGVLNACAH 412
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ R D+ E D V W MIDGYLR A LF+ + +++ T ++++
Sbjct: 189 VEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISG 245
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151
+ G +E+ + + D+ K +++I +W+ MI G G +
Sbjct: 246 FSRCGMVEVA---REFFDEMKERDEI-----------------SWSAMIDGYIQEGCFME 285
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
AL++F QM + I+P + VLSA
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSA 311
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 122/191 (63%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++SGY VD AR FD M E++ V W+TMI GY R ++ +
Sbjct: 183 KLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYAD 242
Query: 66 ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ LF+++Q + ++ T+VS+L+A A+LGAL+LG+WI +I +NK++ +F GNAL
Sbjct: 243 AIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALA 302
Query: 125 DMYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W+ +I+GLA+ G ++A + F++M+ ++P+++
Sbjct: 303 DMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDI 362
Query: 170 AYVGVLSARTH 180
+++G+L+A TH
Sbjct: 363 SFMGLLTACTH 373
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 49/180 (27%)
Query: 50 WTTMIDGYLRVNRFREALTLF--QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
+ ++ + + N + ++ F Q + + DE+T S+L A A L + G+ + +
Sbjct: 93 YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152
Query: 108 IDKNKVKNDIFAGNALIDMY----CKCTVK-----------FTWTTMIVGLAISGNGDK- 151
+ K ++++F N+L+D+Y C C + +W T+I G SG DK
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 152 ------------------------------ALDMFSQMLR-ASIKPDEVAYVGVLSARTH 180
A+++F QM + P++V V VLSA H
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ F +M ERD + W+ +I G EA F E+ + ++ + + +LTA +
Sbjct: 314 AKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTH 373
Query: 95 LGALELG 101
G ++ G
Sbjct: 374 AGLVDKG 380
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 104/161 (64%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD MP+RD + WT+MI GY + ++F +A+ LFQE+ + + D+ T+ S+L+A A+
Sbjct: 179 ARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
LG L++G + YI ++ V+ DI+ GN+LIDMYCKC + +WT++
Sbjct: 239 LGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSV 298
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I GLA++G + ALD+FSQMLR ++P +VG+L A H
Sbjct: 299 ISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAH 339
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 15/175 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y Q+ A++ FD M +RD V W T+I GY + N+++E L LF + +NI
Sbjct: 64 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 123
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-----CTVKF- 134
D T+V I+ A ++LG E + + YI +N ++ D++ GN LIDMY + K
Sbjct: 124 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLF 183
Query: 135 ---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+WT+MI G + + A+ +F +M+ A +KPD+V VLSA H
Sbjct: 184 DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y +R +++ LF + S+ + +V++ T N+ A + I + K ++
Sbjct: 2 YSPCDRRQKSHFLFIIVALSSTIAPAALVVALTT---NINASTISSSIHVHALKLGFESY 58
Query: 117 IFAGNALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLR 161
+F NALI MY C + F +W T+I G + + L +F M
Sbjct: 59 LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 118
Query: 162 ASIKPDEVAYVGVLSARTH 180
A+IK D V V ++ A +H
Sbjct: 119 ANIKADAVTMVKIILACSH 137
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVIS-YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++ +IS + A++SG+ V++AR+ FD+M ERD + W+ MIDGY++ F
Sbjct: 226 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFM 285
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL +F ++Q I +F + S+L+A ANLGAL+ G WI TY +N ++ D G +L+
Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 345
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W MI GLA+ G + A+D+FS+M I P+E+
Sbjct: 346 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEI 402
Query: 170 AYVGVLSARTH 180
+VGVL+A H
Sbjct: 403 TFVGVLNACAH 413
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ R D+ E D V W MIDGYLR A LF+ + +++ T ++++
Sbjct: 190 VEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISG 246
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151
+ G +E+ + + D+ K +++I +W+ MI G G +
Sbjct: 247 FSRCGMVEVA---REFFDEMKERDEI-----------------SWSAMIDGYIQEGCFME 286
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
AL++F QM + I+P + VLSA
Sbjct: 287 ALEIFHQMQKEKIRPRKFVLPSVLSA 312
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 17/188 (9%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G ++N++++ TA++ Y ++ AR+ FD M RD V W+ MI GY + ++ REAL
Sbjct: 250 GLVRNRNLM--TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALA 307
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF E+Q + + ++ T+VS+L+A A LGALE G+W+ +YI + ++ I G AL+D Y
Sbjct: 308 LFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYA 367
Query: 129 KCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
KC +TWT +I G+A +G G +AL++FS M +ASI+P +V ++G
Sbjct: 368 KCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIG 427
Query: 174 VLSARTHN 181
VL A +H+
Sbjct: 428 VLMACSHS 435
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 17/184 (9%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G M ++ V+S +++ Y + V A+ FD + E V+W +I Y++ + E +
Sbjct: 149 GLMADRFVLS--SLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVE 206
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F+ + + DE T+VS++TA +G +LG+W+ Y+D+ + + ALIDMY
Sbjct: 207 MFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYA 266
Query: 129 KCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
KC W+ MI G + +AL +FS+M A ++P++V V
Sbjct: 267 KCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVS 326
Query: 174 VLSA 177
VLSA
Sbjct: 327 VLSA 330
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+I TA+V Y +D A + F+ MP ++ WT +I G R REAL LF ++
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK 415
Query: 76 SNIMGDEFTIVSILTARANLGALELG 101
++I + T + +L A ++ +E G
Sbjct: 416 ASIEPTDVTFIGVLMACSHSCLVEEG 441
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 112/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +K K+ +S+ ++ GY+ + A + FD+MPE+D + WT IDG+++ F +A
Sbjct: 154 IFDDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQA 213
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D TI+++L+A ANLGAL LG WI Y+ + + +N++ GN+LIDM
Sbjct: 214 LEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDM 273
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +W ++IVG A +G ++AL+ F M + KPD V++
Sbjct: 274 YSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSF 333
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 334 TGALTACSH 342
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 51/203 (25%)
Query: 24 SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
S I + ++ QC + + WT+ I + + EA +LF +++ + + +
Sbjct: 38 SHLIQHPRTNLKHQCNRSIDLT--IAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHI 95
Query: 84 TIVSILTARANLG--ALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKC---------- 130
T ++++ A+ +G I Y+ K + ++ G AL+DMY KC
Sbjct: 96 TFATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIF 155
Query: 131 ---TVK---------------------------------FTWTTMIVGLAISGNGDKALD 154
VK +WT I G G+ ++AL+
Sbjct: 156 DDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALE 215
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
F +M + ++PD V + VLSA
Sbjct: 216 WFREMQVSKVEPDYVTIIAVLSA 238
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++ARQ F +M +R V W ++I G+ EAL F +Q D + LTA
Sbjct: 280 IELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSFTGALTA 339
Query: 92 RANLGALELG 101
++ G ++ G
Sbjct: 340 CSHAGMVDEG 349
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+++ M KD++S TA+VS Y +V+IAR FD MPE+D V W+ MI GY+ N+ E
Sbjct: 66 KLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNE 125
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL+LF +Q I DE T++S+++A ANLG+L +WI +I N + + NALID
Sbjct: 126 ALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHICNALID 185
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC +K TWT+MI A+ G+G +L +F QM +P+EV
Sbjct: 186 MFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVT 245
Query: 171 YVGVLSARTH 180
++ +L A H
Sbjct: 246 FLSLLYACCH 255
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++A F++MP ++ + WT+MI + + +L LF++++ +E T +S+L A
Sbjct: 193 INLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYA 252
Query: 92 RANLG 96
++G
Sbjct: 253 CCHVG 257
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 110/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K ++S+T +V GY +D+AR+ ++PE+ V W +I G ++ + +EA
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q I D+ T+V+ L+A + LGAL++G WI YI+++K+ D+ G AL+DM
Sbjct: 376 LALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDM 435
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TWT +I GLA+ GN AL FS+M+ I PDE+ +
Sbjct: 436 YAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITF 495
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 496 LGVLSACCH 504
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ + A ++ ++ ++ +A F++ RD V W +MI G ++ EA+ +++E++
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ +E T++ ++++ + + L LG+ YI ++ ++ I NAL+DMY KC
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 135 T---------------WTTMIVGLA--------------------------ISG-----N 148
T WTTM++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +AL +F +M +I+PD+V V LSA
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSA 400
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y + A Q F+++P+R+ + WT +I G ++AL+ F ++
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMI 484
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
I+ DE T + +L+A + G +E G
Sbjct: 485 HIGIVPDEITFLGVLSACCHGGLVEEG 511
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F M ++ S+ A++ GY V+ A F QMP RD + WTTMI Y +
Sbjct: 92 MSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQN 151
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+FREAL +F E+QT+ I DE T+ +I++A A+LGAL+LG+ I Y + D++ G
Sbjct: 152 KQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIG 211
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+ALIDMY KC F W ++I GLA+ G ++AL MFS+M R IK
Sbjct: 212 SALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIK 271
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++ VL A TH
Sbjct: 272 PNGVTFISVLGACTH 286
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MGF L DV +A++ Y +D + F ++ +++ W ++I+G
Sbjct: 202 MGFDL---------DVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVH 252
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
EAL +F +Q I + T +S+L A + G +E G
Sbjct: 253 GYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEG 293
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 110/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K ++S+T +V GY +D+AR+ ++PE+ V W +I G ++ + +EA
Sbjct: 316 LFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEA 375
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q I D+ T+V+ L+A + LGAL++G WI YI+++K+ D+ G AL+DM
Sbjct: 376 LALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDM 435
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TWT +I GLA+ GN AL FS+M+ I PDE+ +
Sbjct: 436 YAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITF 495
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 496 LGVLSACCH 504
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ + A ++ ++ ++ +A F++ RD V W +MI G ++ EA+ +++E++
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ +E T++ ++++ + + L LG+ YI ++ ++ I NAL+DMY KC
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 135 T---------------WTTMIVGLA--------------------------ISG-----N 148
T WTTM++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +AL +F +M +I+PD+V V LSA
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSA 400
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y + A Q F+++P+R+ + WT +I G ++AL+ F ++
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMI 484
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
I+ DE T + +L+A + G +E G
Sbjct: 485 HIGIVPDEITFLGVLSACCHGGLVEEG 511
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K++ S+ +++G + AR+ FD+M ERD + W++M+DGY+ R++EA
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +FQ++Q F + S+L A +N+GA++ G W+ Y+ +N +K D G AL+DM
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDM 338
Query: 127 YCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K FTW MI GLAI G + AL++FS++ +KP+ +
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITL 398
Query: 172 VGVLSARTH 180
VGVL+A H
Sbjct: 399 VGVLTACAH 407
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A + Y + +++ AR+ F E D V W TMIDGYL+ A LF ++
Sbjct: 166 DVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
NI G +++ L NLG + D+ +++I
Sbjct: 225 VKNI-GSWNVMINGLAKGGNLGD------ARKLFDEMSERDEI----------------- 260
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++M+ G +G +AL++F QM R +P VL+A
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++D+ + F++M ER+ W MI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + T+V +LTA A+ G ++ G
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKG 414
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 110/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K++ S+ +++G + AR+ FD+M ERD + W++M+DGY+ R++EA
Sbjct: 219 LFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEA 278
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +FQ++Q F + S+L A +N+GA++ G W+ Y+ +N +K D G AL+DM
Sbjct: 279 LEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDM 338
Query: 127 YCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K FTW MI GLAI G + AL++FS++ +KP+ +
Sbjct: 339 YAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITL 398
Query: 172 VGVLSARTH 180
VGVL+A H
Sbjct: 399 VGVLTACAH 407
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A + Y + +++ AR+ F E D V W TMIDGYL+ A LF ++
Sbjct: 166 DVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
NI G +++ L NLG + D+ +++I
Sbjct: 225 VKNI-GSWNVMINGLAKGGNLGD------ARKLFDEMSERDEI----------------- 260
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++M+ G +G +AL++F QM R +P VL+A
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAA 303
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++D+ + F++M ER+ W MI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + T+V +LTA A+ G ++ G
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKG 414
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFR 64
++F M NK V+S+ ++ Y + A + F +M + W MI+G++ + +
Sbjct: 131 KVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYE 190
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL+LF E+Q S + GD+ T+ S+L A +LGALELG+W+ YI+K K++ D+ G AL+
Sbjct: 191 EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALV 250
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC TWT +IVGLA+ G G KAL++F +M + +KPD +
Sbjct: 251 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 310
Query: 170 AYVGVLSARTH 180
+VGVL+A +H
Sbjct: 311 TFVGVLAACSH 321
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 21/168 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F +MPE+D + WT +I G + +AL LF E+Q
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S + D T V +L A ++ G + G + + +K ++ I ++DM
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM------- 354
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G +A D+ M A PD VG+LSA R H
Sbjct: 355 ---------LGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSACRIH 390
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 50/193 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+Q+P ++I GY N R+A+ +Q + + D FT S+ +
Sbjct: 31 ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKS--- 87
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CKCTVK------------------- 133
G L G+ + + K +D + N L++MY C C V
Sbjct: 88 CGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 147
Query: 134 --------------------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
F W MI G + ++AL +F++M + +K D
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207
Query: 168 EVAYVGVLSARTH 180
+V +L A TH
Sbjct: 208 KVTMASLLIACTH 220
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ +VSGY ++ AR+ FDQM ERD + W MI GY++ ++ +
Sbjct: 169 QVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSD 228
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ +F E+Q ++ D+ T+VS+L+A A++GAL+ G WI ++ +++ GNALI
Sbjct: 229 AIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALI 288
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W+TMI G G+ D+A +S+ML +KP+EV
Sbjct: 289 DMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEV 348
Query: 170 AYVGVLSARTH 180
++G+LSA +H
Sbjct: 349 TFMGLLSACSH 359
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 49/195 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF--QEIQTSNIMGDEFTIVSILTAR 92
A+ F Q+P + W +I ++ + AL F Q S +E+ S++ A
Sbjct: 64 AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWT 137
A L A+ G + + K+ + N+I G +L+DMY K +W
Sbjct: 124 AGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWN 183
Query: 138 TMIVGLAISGNGDKALDMFSQMLR--------------------------------ASIK 165
TM+ G + G+ + A +F QML +
Sbjct: 184 TMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVV 243
Query: 166 PDEVAYVGVLSARTH 180
PD+V V VLSA H
Sbjct: 244 PDDVTLVSVLSACAH 258
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + DV++ +++ G +VD +R+ FD MP R V W +MI GY+R R EA
Sbjct: 181 VFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEA 240
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+++Q + EFT+VS+L+A A+LGAL+ GEW+ Y+ + + ++ A+IDM
Sbjct: 241 LELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDM 300
Query: 127 YCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC V W ++I+GLA++G KA++ FS++ + +KPD V++
Sbjct: 301 YCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSF 360
Query: 172 VGVLSA 177
+GVL+A
Sbjct: 361 IGVLTA 366
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 51/217 (23%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ V+++ A SG IN A F +P + W T+I G+ R + A++L
Sbjct: 57 TVAASRVLTFCASSSGDIN-----YAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISL 111
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC- 128
F ++ S+++ T S+ A A LGA G + + K ++ D F N +I MY
Sbjct: 112 FVDMLCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYAN 171
Query: 129 ------------------------------KC---------------TVKFTWTTMIVGL 143
KC + TW +MI G
Sbjct: 172 SGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGY 231
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ +AL++F +M ++P E V +LSA H
Sbjct: 232 VRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAH 268
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEI 73
+VI TAI+ Y + A + F+ P R W ++I G L +N + R+A+ F ++
Sbjct: 290 NVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIG-LALNGYERKAIEYFSKL 348
Query: 74 QTSNIMGDEFTIVSILTARANLGAL 98
+ S++ D + + +LTA +GA+
Sbjct: 349 EASDLKPDHVSFIGVLTACKYIGAV 373
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 121/190 (63%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+++S++ ++SGY ++ ARQ F+ MP R+ V W MI GY + ++ +A
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADA 274
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ LF+++Q + ++ T+VS+L+A A+LGAL+LG+WI +I +NK++ +F GNAL D
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 334
Query: 126 MYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W+ +I+GLA+ G ++A + F++M+ ++P++++
Sbjct: 335 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 394
Query: 171 YVGVLSARTH 180
++G+L+A TH
Sbjct: 395 FMGLLTACTH 404
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY----CKCTVK--- 133
DE+T S+L A A L + G+ + ++ K ++++F N+L+D+Y C C +
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+W T+I G SG DKA +F M+ ++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL 224
Score = 35.8 bits (81), Expect = 6.6, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ F +M ERD + W+ +I G EA F E+ + ++ + + +LTA +
Sbjct: 345 AKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTH 404
Query: 95 LGALELG 101
G ++ G
Sbjct: 405 AGLVDKG 411
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 111/165 (67%), Gaps = 15/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ AR+ FD+M + D V W+ MI GY+RV R +A+ LF+E+Q + DE T+VS+L+A
Sbjct: 65 IEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSA 124
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF---------TW 136
LGALELG+W+++Y++K +V+ ++ NALIDM+ KC T F +W
Sbjct: 125 CTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSW 184
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
T++I GLA+ G G +A+ +F +M+R+ + PD+V ++G+LSA +H+
Sbjct: 185 TSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHS 229
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----VK 133
+ ++FT +L A A +G L LG+ + + K +++ N L+ MYC C ++
Sbjct: 7 LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66
Query: 134 F--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F +W+ MI G G A+++F +M + PDE+ V VLSA T
Sbjct: 67 FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACT 126
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
K+V A++ + VD A F M ER+ V WT++I G R EA+ +F+E
Sbjct: 147 QKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEE 206
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG----NALIDMYC 128
+ S + D+ + +L+A ++ G ++ G K Y D + I ++DM C
Sbjct: 207 MVRSGVTPDDVVFIGLLSACSHSGLVDKG---KRYFDSMRKDFSIVPKIEHYGCMVDMLC 263
Query: 129 K 129
+
Sbjct: 264 R 264
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 120 VFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEA 179
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 180 LAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDL 239
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 240 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 299
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 300 TGALTACSH 308
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ AR+ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 246 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTA 305
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + +T +++ I L+D+Y + +G +
Sbjct: 306 CSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR----------------AGRLE 349
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+AL + M +KP+EV +L+A RTH
Sbjct: 350 EALKVVQSM---PMKPNEVVIGSLLAACRTH 377
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M+++ V S+ +VSG V AR+ F+ M E+D + W++MIDGY++ ++E
Sbjct: 216 ELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKE 275
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F +Q I +F + S+L A ANLGAL+ G WI Y+ KN + D G AL+D
Sbjct: 276 ALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVD 335
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T+K FTW MI GLA+ G + A+ +F +M + ++ +E+
Sbjct: 336 MYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEIT 395
Query: 171 YVGVLSARTH 180
+VG+L+A H
Sbjct: 396 FVGLLNACAH 405
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+V Y ++D+A F+ M E++ W MI G R +A+ LF ++Q
Sbjct: 326 DAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQ 385
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ +E T V +L A A+ G ++ G
Sbjct: 386 KEKVRSNEITFVGLLNACAHKGMVDEG 412
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A + Y + AR+ D+ E D + + MIDGY + A LF++++
Sbjct: 163 DVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKME 222
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
++ G +VS L + E E +K+++
Sbjct: 223 DRSV-GSWNVMVSGLAKNGMVK--EARELFNDMREKDEI--------------------- 258
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++MI G GN +AL++F+ M I+P + VL+A
Sbjct: 259 SWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAA 301
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
+ +D+A FD +P+ + ++ +I L + +A+ + ++ +N ++FT S+L
Sbjct: 77 KNIDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLL 136
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
A A + G + ++ K + D+ +A I MY
Sbjct: 137 KACGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMY 174
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 111/190 (58%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++VIS+T+++ GY N V AR FD MPE++ V W MI GY + + EA
Sbjct: 221 LFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEA 280
Query: 67 LTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF+E+Q+S + +E T+VSIL A A LGALELGEW+ ++ + K+ + +L+D
Sbjct: 281 LKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVD 340
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +I G A++G +AL+ FS+M + IKP+++
Sbjct: 341 MYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDIT 400
Query: 171 YVGVLSARTH 180
GVLSA +H
Sbjct: 401 MTGVLSACSH 410
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 62/130 (47%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y+ ++ AR+ F ++P+++ W +I+G+ EAL F E+Q I
Sbjct: 336 TSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIK 395
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
++ T+ +L+A ++ G +E G+ + ++ + I L+D+ + +
Sbjct: 396 PNDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENL 455
Query: 140 IVGLAISGNG 149
I + NG
Sbjct: 456 IKSMPFEANG 465
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M NK V+++ ++++G + +++A + FD+M ERD V W TMI ++V+ F E
Sbjct: 388 KVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEE 447
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+E+Q I GD T+V I +A LGAL+L +W+ TYI+KN + D+ G AL+D
Sbjct: 448 AIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVD 507
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ +C + WT I +A+ GN + A+++F++ML +KPD+V
Sbjct: 508 MFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVV 567
Query: 171 YVGVLSARTH 180
+V +L+A +H
Sbjct: 568 FVALLTACSH 577
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 70/116 (60%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y +VD+ R+ FD M ER+ V WT++I+GY + +EA++LF ++
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+ + + T+V +++A A L LELG+ + +YI + ++ NAL+DMY KC
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKC 279
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
I A+V Y+ + ARQ FD+ ++ V++ T++ Y+ + L + E+
Sbjct: 267 IMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQK 326
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK--- 133
D+ T++S + A A LG L +G+ Y+ +N ++ NA+IDMY KC +
Sbjct: 327 GPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAA 386
Query: 134 ------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
TW ++I GL G+ + A +F +ML
Sbjct: 387 CKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 30 EQVDIARQCF--DQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
E +D AR F D ++ +I GY +A+ L+ ++ I+ D++T
Sbjct: 76 ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPF 135
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------- 132
+L+A + + AL G + + K ++ DIF N+LI Y +C
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERN 195
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT++I G + +A+ +F QM A ++P+ V V V+SA
Sbjct: 196 VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISA 240
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V + A F +M +RD WT I A+ LF E+ +
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ V++LTA ++ G+++ G + ++K + ++ I ++D+
Sbjct: 563 PDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL------------ 610
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A+D+ M I+P++V + +L+A R H
Sbjct: 611 ----LGRAGLLEEAVDLIQSM---PIEPNDVVWGSLLAACRKH 646
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 15/178 (8%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+ AI+ GY VD+AR FDQM RD + + +MI GY+ R R+AL LF +++ +
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TV 132
D FT+VS+LTA A+LGAL G + I++ V+ D++ G AL+DMY KC T
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426
Query: 133 KF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
F TWT MI GLA +G G AL+ F QM R +P V Y+ VL+A +H+
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 47/217 (21%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD + + ++ G + +D AR+ Q PER+ V WT++I GY R R +A+
Sbjct: 163 FDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAV 222
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN---------DIF 118
F + + + DE ++ L+A + L L+LG + + + +++ D++
Sbjct: 223 YCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMY 282
Query: 119 AG-----------------------NALIDMYCK---------------CTVKFTWTTMI 140
A NA+ID YCK T+ +MI
Sbjct: 283 AKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMI 342
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G SG AL +F QM R ++ D V +L+A
Sbjct: 343 TGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTA 379
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV TA++ Y+ +VD A F +M ERD WT MI G ++AL F ++
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM 462
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ T +++LTA ++ L+ G + N++++ + + ++ Y
Sbjct: 463 KRDGFQPTSVTYIAVLTACSHSSLLDEGR-----LHFNEMRS-LHKLHPQVEHY------ 510
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
MI LA SG D+A+ + M ++P+ V + +LSA R H
Sbjct: 511 ---GCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWGSILSACRVH 552
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 114/195 (58%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F + K V+S+TA+++G I +++ AR FD RD ++WT M+ Y +
Sbjct: 278 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQA 337
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N +A LF +++TS + + TIVS+L+ A GAL+LG+W+ +YIDK +V+ D
Sbjct: 338 NCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN 397
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC W +I G A+ G G++ALD+F++M R +K
Sbjct: 398 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 457
Query: 166 PDEVAYVGVLSARTH 180
P+++ ++G+L A +H
Sbjct: 458 PNDITFIGLLHACSH 472
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 48/212 (22%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV A++ Y V+ AR FD+M ERD V W+TMI R F AL L +E
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKC 130
+ + E +VS++ A+ + +G+ + Y+ +N + AL+DMY KC
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275
Query: 131 -----------------TVKFT-----------------------------WTTMIVGLA 144
V +T WT M+ A
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYA 335
Query: 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ D+A ++F QM + ++P +V V +LS
Sbjct: 336 QANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 22/158 (13%)
Query: 41 QMPERDY-------VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
Q+P D+ W +I Y + N+ R AL ++ +++ + D F S+L A
Sbjct: 76 QIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACG 135
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKF--------------TWTT 138
+ +LG+ I ++ K + D+F GNAL+ MY +C V++ +W+T
Sbjct: 136 QVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWST 195
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
MI L+ + D AL++ +M ++P EVA V +++
Sbjct: 196 MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVN 233
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I TA+V Y ++ A + F + RD +W +I G+ EAL +F E++
Sbjct: 393 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 452
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ ++ T + +L A ++ G + G K +K F I+ Y C V
Sbjct: 453 RQGVKPNDITFIGLLHACSHAGLVTEG---KKLFEK---MVHTFGLVPQIEHY-GCMVDL 505
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G D+A +M M IKP+ + + +++A R H
Sbjct: 506 --------LGRAGLLDEAHEMIKSM---PIKPNTIVWGALVAACRLH 541
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 116/189 (61%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+++ +++GY+ + AR+ FD MPER+ V WTT+I GY ++ R EA
Sbjct: 136 VFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEA 195
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +F+ +Q I D ++S+L+A +LGA++LGEW+ ++ + ++ +I N++IDM
Sbjct: 196 VEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDM 255
Query: 127 Y--CKCTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y C C K TWTT+I G A+ G G +A++MF +M R ++ P++V +
Sbjct: 256 YMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTF 315
Query: 172 VGVLSARTH 180
+ +LSA +H
Sbjct: 316 LAILSACSH 324
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+++ +I+ Y+ ++ A + F+ M E+ V WTT+I G+ +A+ +F+
Sbjct: 243 RQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRR 302
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
++ N+ ++ T ++IL+A +++G +LG W + + ++K + ++D+
Sbjct: 303 MERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDL 357
>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
Length = 501
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 15/179 (8%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
+ AI+ GY VD+AR FDQM RD + + +MI GY+ R R+AL LF +++
Sbjct: 306 PWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHG 365
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------T 131
+ D FT+VS+LTA A+LGAL G + I++ V+ D++ G AL+DMY KC T
Sbjct: 366 MRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEAT 425
Query: 132 VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
F TWT MI GLA +G G AL+ F QM R +P V Y+ VL+A +H+
Sbjct: 426 AVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD + + ++ G + +D AR+ Q PER+ V WT++I GY R R +A+
Sbjct: 163 FDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAV 222
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F + + + DE ++ L+A + L L+LG + + + +++ ALIDMY
Sbjct: 223 YCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMY 282
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC W +I G G+ D A +F QM
Sbjct: 283 AKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQM 330
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 55/156 (35%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y + D AR+ FD++P +D V+W T+I G +R EA L +
Sbjct: 146 LIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLL-------VQAP 198
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIV 141
E +VS WT++I
Sbjct: 199 ERNVVS------------------------------------------------WTSLIA 210
Query: 142 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G + +G A+ F+ ML + PDEVA +G LSA
Sbjct: 211 GYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSA 246
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+DV TA++ Y+ +VD A F +M ERD WT MI G ++AL F +
Sbjct: 402 EEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQ 461
Query: 73 IQTSNIMGDEFTIVSILTA 91
++ T +++LTA
Sbjct: 462 MKRDGFQPTSVTYIAVLTA 480
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEA 190
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 191 LLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDL 250
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 311 TGALTACSH 319
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
I+ A+++ + N I R +Q V WT+ I+ R R EA F ++ +
Sbjct: 9 ITSPALIT-HKNHANPKIQRH--NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLA 65
Query: 77 NIMGDEFTIVSILTARANL--GALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCK---- 129
+ + T +++L+ + G+ LG+ + Y K + +N + G A+I MY K
Sbjct: 66 GVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRF 125
Query: 130 --CTVKF---------TWTTMIVGLAISGNGDKALDMFSQM 159
+ F TW TMI G SG D A MF +M
Sbjct: 126 KKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKM 166
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ F M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + + ++ I L+D+Y + +G +
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR----------------AGRLE 360
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL + M +KP+EV +L+A
Sbjct: 361 DALKLVQSM---PMKPNEVVIGSLLAA 384
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%), Gaps = 15/162 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ FD+ P +D V W+ MI GY R A+TLF+E+Q + + DE T+VS+L+A A+
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK----------FTWTTM 139
LGALELG+W+++YI++ + + NALIDM+ KC VK +WT+M
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
IVGLA+ G G +A+ +F +M+ + PD+VA++GVLSA +H+
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHS 447
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 43 PERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
P D L+ T+I + + + AL + ++ + ++FT +L A A + LELG
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------TVK--FTWTTMIV 141
+ + K + D N L+ MYC C VK TW+ MI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIG 306
Query: 142 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G A +GN +A+ +F +M + PDE+ V VLSA
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSA 342
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G LE + KN + V A++ + VD A + F +M R V WT+MI G
Sbjct: 351 LGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLA 410
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R EA+ +F E+ + D+ + +L+A ++ G ++ G + Y N ++N +F
Sbjct: 411 MHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHY---YF--NTMEN-MF 464
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ I+ Y M+ L+ +G ++AL+ M ++P++V + +++A
Sbjct: 465 SIVPKIEHY---------GCMVDMLSRAGRVNEALEFVRAM---PVEPNQVIWRSIVTA 511
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 114/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + DV+S+T++V+GYI V AR+ FD+MPE++ V W+ MI GY + + F +A
Sbjct: 170 VFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKA 229
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ L+ +Q+ + +E +VS++ + A+LGALELGE YI +NK+ ++ G AL+DM
Sbjct: 230 IELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDM 289
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +WTT+I G A+ G +KAL+ FS+M +A + P E+ +
Sbjct: 290 YARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITF 349
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 350 TAVLSACSH 358
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + + ++S IN+ +D A Q F Q+ + ++ + I G+ ++ + + +
Sbjct: 46 DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------ 128
+ ++ D T ++ A G+L++G I ++ +D++ N+L+ MY
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165
Query: 129 ---------KCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
C +WT+M+ G SG+ A +F +M
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKM 205
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 11 MKNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
++NK ++I TA+V Y +D A FDQ+P RD + WTT+I G+ +AL
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
F ++ + + E T ++L+A ++ G +E G
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 114/196 (58%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M N+D +S+ A+++GY +V++ + FD+MPER+ W +I GY++
Sbjct: 223 MAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKN 282
Query: 61 NRFREALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
F E L F+ + +++ ++FT+V++L+A + LGAL++G+W+ Y + K ++F
Sbjct: 283 GLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFV 342
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
GN LIDMY KC V +W T+I GLAI G+ AL MF +M
Sbjct: 343 GNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGE 402
Query: 165 KPDEVAYVGVLSARTH 180
+PD V +VG+LSA TH
Sbjct: 403 EPDGVTFVGILSACTH 418
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++FG M ++V+ +TAI++GYI V R+ FD PERD V+W+ +I GY+
Sbjct: 166 KVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAA 225
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF ++ + M + ++L A G +E+ E KV +++ N
Sbjct: 226 ARELFDKMPNRDTM----SWNAMLNGYAVNGEVEMFE---------KVFDEMPERNV--- 269
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G +G + L+ F +ML + P++ V VLSA
Sbjct: 270 --------FSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSA 314
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
+++ AR+ FD++P+ + W M GYL+ R+ + LF E+ M + FT I+
Sbjct: 58 KRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMII 117
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ L + GE + K+ K++ F +LIDMY K
Sbjct: 118 KSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSK 157
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + +D + W T+I+G +AL +F +++ D T V IL+A ++G +
Sbjct: 363 FNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLV 422
Query: 99 ELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFS 157
+ G + K+ +D + I ++D+ L +G D+AL+
Sbjct: 423 KDGFLYFKSMVDHYSIVPQIEHYGCMVDL----------------LGRAGLLDQALNFIR 466
Query: 158 QMLRASIKPDEVAYVGVLSA 177
+M I+PD V + +L A
Sbjct: 467 KM---PIEPDAVIWAALLGA 483
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI+G++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEA 190
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 191 LAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDL 250
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 251 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTF 310
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 311 TGALTACSH 319
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 257 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTA 316
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + + I ++ I L+D+Y + +G +
Sbjct: 317 CSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSR----------------AGRLE 360
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL + M +KP+EV +L+A R H
Sbjct: 361 DALKLVQSM---PMKPNEVVIGSLLAACRNH 388
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +++++ TA++SGY +V+ AR FDQM E+D V W+ MI GY ++ +E
Sbjct: 4 KLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQE 63
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q I D+ TI+S+++A A LG L+ +WI Y+DKN + + NALID
Sbjct: 64 ALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALID 123
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +WT+MI AI G+ AL F QM +IKP+ V
Sbjct: 124 MYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVT 183
Query: 171 YVGVLSARTH 180
+VGVL A +H
Sbjct: 184 FVGVLYACSH 193
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y + AR F++M R+ + WT+MI+ + AL F +++ NI
Sbjct: 119 NALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIK 178
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T V +L A ++ G +E G
Sbjct: 179 PNGVTFVGVLYACSHAGLVEEG 200
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF ++F + D+ S+ +I++ VD+AR F MPER+ + W+ MI+GY+R
Sbjct: 115 LGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRC 174
Query: 61 NRFREALTLFQEIQ---TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
+++EAL LF+E+Q +++ +EFT+ +L A LGALE G+W YIDK + D+
Sbjct: 175 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDV 234
Query: 118 FAGNALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMFSQMLR 161
G ALIDMY KC T F+ W+ MI GLA+ G ++ + +FS+M+
Sbjct: 235 VLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMIN 294
Query: 162 ASIKPDEVAYVGVLSARTH 180
++P+ V ++ V A H
Sbjct: 295 QGVRPNAVTFLAVFCACVH 313
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F TM K ++S TA+++ Y ++D AR FD M ERD V W MIDGY + E
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 239
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+ + + +E T++S+L+A LGALE G W+ +YI+ N ++ ++ G AL+D
Sbjct: 240 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 299
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W +MIVG A+ G +AL +F M R + P +
Sbjct: 300 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNIT 359
Query: 171 YVGVLSARTHN 181
++G+LSA H+
Sbjct: 360 FIGILSACGHS 370
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y + ++D + F + WT +I G+ +AL + ++ T + + FT
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---------------- 129
SIL L +E G+ + + K +D++ L+D+Y +
Sbjct: 132 SSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187
Query: 130 -----------CTVKF-------------------TWTTMIVGLAISGNGDKALDMFSQM 159
C K W MI G +G ++AL +F +M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247
Query: 160 LRASIKPDEVAYVGVLSA 177
L+A KP+EV + VLSA
Sbjct: 248 LKAKAKPNEVTVLSVLSA 265
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR FD++ ++D V W +MI GY +EAL LF+ + +
Sbjct: 295 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLH 354
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T + IL+A + G W+ D NK+K D + I+ Y C V
Sbjct: 355 PTNITFIGILSACGHSG------WVTEGWDIFNKMK-DEYGIEPKIEHY-GCMVNL---- 402
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ ++A ++ M +I+PD V + +L A R H
Sbjct: 403 ----LGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLH 438
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F TM K ++S TA+++ Y ++D AR FD M ERD V W MIDGY + E
Sbjct: 114 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 173
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+ + + +E T++S+L+A LGALE G W+ +YI+ N ++ ++ G AL+D
Sbjct: 174 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 233
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W +MIVG A+ G +AL +F M R + P +
Sbjct: 234 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNIT 293
Query: 171 YVGVLSARTHN 181
++G+LSA H+
Sbjct: 294 FIGILSACGHS 304
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR FD++ ++D V W +MI GY +EAL LF+ + +
Sbjct: 229 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLH 288
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T + IL+A + G W+ D NK+K D + I+ Y C V
Sbjct: 289 PTNITFIGILSACGHSG------WVTEGWDIFNKMK-DEYGIEPKIEHY-GCMVNL---- 336
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G+ ++A ++ M +I+PD V + +L A R H
Sbjct: 337 ----LGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLH 372
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ +V GY +++ AR+ FD+MPE+D V WT MI GY + + E
Sbjct: 231 KMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTE 290
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNA 122
L LF+ +Q+ SN++ +E T+VS+L+A A+L ALE G W +IDK+K + ++ G A
Sbjct: 291 TLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAA 350
Query: 123 LIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC VK W +I GLA++G+ ++D+F QM R+ KP+
Sbjct: 351 LIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPN 410
Query: 168 EVAYVGVLSARTH 180
+ +VGVL+A H
Sbjct: 411 GITFVGVLTACAH 423
Score = 65.5 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYL 58
+G +F M ++ +S++A+V Y ++D+AR+ FD+MP R+ V W +MI G+
Sbjct: 162 IGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFA 221
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R A +F E+ N++ W T + V ++
Sbjct: 222 RHGLLPLARKMFDEMPVRNLV----------------------SW-NTMVRGYAVNGEMN 258
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
L D + V +WT MI G A + + L++F M S + P+EV V VLSA
Sbjct: 259 DARELFDRMPEKDV-VSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSA 317
Query: 178 RTH 180
H
Sbjct: 318 CAH 320
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M + DV+S+ ++SGY N +V++ + F++MP R+ W +I GY+R F+E
Sbjct: 77 ELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKE 136
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL F+ + ++ +++T+V++L+A + LG LE+G+W+ Y D K ++F GNALI
Sbjct: 137 ALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALI 196
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V TW T+I LA+ + AL +F M RA +PD V
Sbjct: 197 DMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGV 256
Query: 170 AYVGVLSARTH 180
+VG+LSA TH
Sbjct: 257 TFVGILSACTH 267
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 87/173 (50%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M++K+V ++TA+V+ ++ + AR+ FD P+ D VLW ++ GY+ +
Sbjct: 15 KVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVA 74
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF + ++M + ++L+ AN G +EL ++K + ++ +N
Sbjct: 75 ARELFDRMPDCDVM----SWNTVLSGYANNGEVEL--FVKVF-EEMPARN---------- 117
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
++W +I G +G +AL+ F +ML + P++ V VLSA
Sbjct: 118 -------VYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSA 163
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y ++ A FD + +D + W T+I+ +AL+LF+ ++ +
Sbjct: 193 NALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGER 252
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V IL+A ++G V+N +++D Y + M
Sbjct: 253 PDGVTFVGILSACTHMGL---------------VRNGFLHFQSMVDDYLIVPQIEHYGCM 297
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ L +G ++A+D+ +M ++PD V + +L A
Sbjct: 298 VDLLGRAGLINQAVDIVRKM---PMEPDVVIWAALLGA 332
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 116/193 (60%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ A++ GY ++D+AR+ FD MPE+D V WT MI GY + R+ +
Sbjct: 245 KMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQ 304
Query: 66 ALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNA 122
L LF+ +Q+ +I +E T+VS+L+A A+L ALE G W +IDK+K + N+ G A
Sbjct: 305 TLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAA 364
Query: 123 LIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC T F W +I GLA++ + + +D+F QM + KPD
Sbjct: 365 LIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPD 424
Query: 168 EVAYVGVLSARTH 180
++ +V VL+A H
Sbjct: 425 DITFVSVLTACAH 437
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+ +V GY ++ AR+ FD+MP R+ V W+ M+ Y A +F +
Sbjct: 159 DVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMP 218
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------ 128
I + T ++T G L L + D+ ++N I + NA++ Y
Sbjct: 219 A--IGRNIITWNLMVTGFGRHGLLPLA---RKMFDEMPIRN-IVSWNAMLRGYAMNGEMD 272
Query: 129 -----------KCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLS 176
K V +WT MI G A +G + L++F M I+P+EV V VLS
Sbjct: 273 VARELFDVMPEKDVV--SWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLS 330
Query: 177 ARTH 180
A H
Sbjct: 331 ACAH 334
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y + D+A + F + +++ W +I G + R + +F++++ S
Sbjct: 363 AALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEK 422
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T VS+LTA A+ G ++ G ++ ++ V+ ++ ++D+ + +
Sbjct: 423 PDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEE 482
Query: 139 MIVGLAISGN 148
+I G+ ++ +
Sbjct: 483 LIRGMPMAPD 492
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F TM K ++S TA+++ Y ++D AR FD M ERD V W MIDGY + E
Sbjct: 127 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 186
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+ + + +E T++S+L+A LGALE G W+ +YI+ N ++ ++ G AL+D
Sbjct: 187 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVD 246
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W +MIVG A+ G +AL +F M R + P +
Sbjct: 247 MYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNIT 306
Query: 171 YVGVLSARTHN 181
++G+LSA H+
Sbjct: 307 FIGILSACGHS 317
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y + ++D + F + WT +I G+ +AL + ++ T + + FT
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---------------- 129
SIL L +E G+ + + K +D++ L+D+Y +
Sbjct: 79 SSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134
Query: 130 -----------CTVKF-------------------TWTTMIVGLAISGNGDKALDMFSQM 159
C K W MI G +G ++AL +F +M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 160 LRASIKPDEVAYVGVLSA 177
L+A KP+EV + VLSA
Sbjct: 195 LKAKAKPNEVTVLSVLSA 212
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR FD++ ++D V W +MI GY +EAL LF+ + +
Sbjct: 242 TALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLH 301
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T + IL+A + G + G W DIF N + D Y + M
Sbjct: 302 PTNITFIGILSACGHSGWVTEG-W------------DIF--NKMKDEYGIEPKIEHYGCM 346
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G+ ++A ++ M +I+PD V + +L A R H
Sbjct: 347 VNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLH 385
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IFG M +DV+S+T++V+GY V+ AR+ FD+MP R+ W+ MI+GY + N F +A
Sbjct: 176 IFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+ ++ ++ +E +VS++++ A+LGALE GE Y+ K+ + ++ G AL+DM
Sbjct: 236 IDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDM 295
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +W+++I GLA+ G+ KA+ FSQM+R P ++
Sbjct: 296 YWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITL 355
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 356 TAVLSACSH 364
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + ++ +I + +A + ++ S I D T ++ A + +
Sbjct: 76 FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 127
+GE + I + +ND++ N+L+ M Y
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGY 195
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
CKC + FTW+ MI G A + +KA+D+F M R + +E V
Sbjct: 196 CKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMV 255
Query: 173 GVLSARTH 180
V+S+ H
Sbjct: 256 SVISSCAH 263
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 48/87 (55%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TA+V Y +++ A + F+++P++D + W+++I G +A+ F ++
Sbjct: 285 NLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMV 344
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ T+ ++L+A ++ G ++ G
Sbjct: 345 RLGFSPRDITLTAVLSACSHGGLVDKG 371
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D IS+ +I+SG++ Q+ A FD MP R V WT MI GY R+ + +
Sbjct: 175 KVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYAD 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+++Q + DE +I+S+L A A LGALE+G+WI Y D+N + NAL++
Sbjct: 235 ALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALME 294
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W+TMI GLA G +A+++F +M +A I+P+ +
Sbjct: 295 MYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGIT 354
Query: 171 YVGVLSARTH 180
++G+LSA H
Sbjct: 355 FLGLLSACAH 364
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 85/227 (37%), Gaps = 62/227 (27%)
Query: 13 NKDVISYTAIVSGYINREQVDI---------ARQCFDQMPERDYVLWTTMIDGY------ 57
+ VI Y+ S ++ + VD+ A F Q+ E + L+ MI +
Sbjct: 34 HAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVY 93
Query: 58 -LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
L + ++E L L + I D FT ++ + + L LG+ + ++ K K++
Sbjct: 94 ALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSN 153
Query: 117 IFAGNALIDMYCKCTVKF------------------------------------------ 134
I NALIDMY KC
Sbjct: 154 ITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPY 213
Query: 135 ----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT MI G G+ AL +F QM ++PDE++ + VL A
Sbjct: 214 RTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPA 260
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q FDQM + D + W+TMI G + REA+ LF+ ++ + I + T + +L+A A+
Sbjct: 305 AYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAH 364
Query: 95 LGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153
G G + + ++ ++ L+D+ L +G +AL
Sbjct: 365 AGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDI----------------LGRAGRLSQAL 408
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
D+ +M +KPD + +LS+ RTH+
Sbjct: 409 DVIEKM---PMKPDSKIWGSLLSSCRTHS 434
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 114/182 (62%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI + ++ Y Q+D AR+ FD++P R+ V WT++I GY R+N ++E L LF+E+Q
Sbjct: 79 DVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELFRELQ 138
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ ++ D + +++A ++GAL G W+ TY ++N + ++ NALIDMY KC
Sbjct: 139 IAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIE 198
Query: 131 --------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSAR 178
VK F+WT MI G A++G D+AL++F+Q+ + +KP+EV ++GVLSA
Sbjct: 199 KAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQVETCNDVKPNEVTFLGVLSAC 258
Query: 179 TH 180
+H
Sbjct: 259 SH 260
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEW 103
RD V W +MI GYL+ R +AL +F E+ N + DE T+V+ LTA G + LG+
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKK 66
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGN 148
I I N D+ G+ LIDMY KC WT++IVG A
Sbjct: 67 IHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNM 126
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ L++F ++ A + D V+SA H
Sbjct: 127 YKEGLELFRELQIAGVIADAALVACVVSACGH 158
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 113/187 (60%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F MK+K+ ++ A+++ Y + A++ FDQ+P +D + W++MI Y + + F +
Sbjct: 1097 KVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSD 1156
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF+++Q + + D I S+L+A A+LGAL+LG+WI Y+ +N +K D N+LID
Sbjct: 1157 SLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLID 1216
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC +W ++I+GLA +G D+ALD+F ML +P+EV
Sbjct: 1217 MFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVT 1276
Query: 171 YVGVLSA 177
++GVL A
Sbjct: 1277 FLGVLIA 1283
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+S+ +++G+ +V+ AR FDQMP R+ V WT +IDGY R + E
Sbjct: 535 KVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAE 594
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
ALTL + + I E T+++++ A +NLG + +GE + Y +K + +D GN+LID
Sbjct: 595 ALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLID 654
Query: 126 MYCKC-----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+Y K ++K +WT++I G A+ G +AL++F++M RA IKP+ +
Sbjct: 655 LYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRI 714
Query: 170 AYVGVLSARTH 180
++ V++A +H
Sbjct: 715 TFLSVINACSH 725
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 55/226 (24%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF L+IF + N + Y A + + AR F++M +D V W ++I GY +
Sbjct: 969 LGFLLDIF--VSNSLIYLYAACGA-------LACARSVFNEMLVKDVVSWNSLIGGYSQH 1019
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NR +E LTLF+ +Q + D+ T+V +++A +LG + + + YI+ N ++ D++ G
Sbjct: 1020 NRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLG 1079
Query: 121 NALIDMYC-----------------KCTVKF----------------------------- 134
N LID YC K TV
Sbjct: 1080 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLI 1139
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W++MI + + + +L++F QM RA +KPD V VLSA H
Sbjct: 1140 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F Q+ LW T++ G + + ++A+ +++ Q + D T +L A A
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTM 139
A + GE + ++ K DIF N+LI +Y C VK +W ++
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I G + + L +F M ++ D+V V V+SA TH
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTH 1053
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 39 FDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
FD+M +R + V WT++I G+ EAL LF E++ + I + T +S++ A ++ G
Sbjct: 669 FDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGL 728
Query: 98 LELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN-------- 148
+E G + K+ + + + +I +IDM + +I GL + N
Sbjct: 729 VEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILL 788
Query: 149 -----------GDKALDMFSQMLRAS 163
G++A+ M S + R S
Sbjct: 789 GCCSKYGEVAMGERAIKMISDLERES 814
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEI 73
D I +++ + V A Q F M E+D + W ++I G L N F EAL +F +
Sbjct: 1207 DTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILG-LANNGFEDEALDIFHSM 1265
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
T +E T + +L A AN +E G +D + + + Y C V
Sbjct: 1266 LTEGPRPNEVTFLGVLIACANRQLVEEG------LDHFERMKSVHNLEPQMKHY-GCVVD 1318
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L+ +G +KA+ S+M + PD V + +L A RTH
Sbjct: 1319 I--------LSRAGQLEKAVSFISEM---PLAPDPVVWRILLGACRTH 1355
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD +++T ++ GY E + AR+ + MP++D V W +I Y + + EA
Sbjct: 291 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEA 350
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F E+Q NI ++ T+VS L+A A +GALELG WI +YI KN +K + + +ALI
Sbjct: 351 LLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIH 410
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +V+ F W+ MI GLA+ G G +A+DMF +M A++KP+ V
Sbjct: 411 MYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVT 470
Query: 171 YVGVLSARTH 180
+ V A +H
Sbjct: 471 FTNVFCACSH 480
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 19/182 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++ Y + +D A + F + E+D V W +MI+G+++ +AL LF++++
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ ++ T+V +L+A A + LE G + +YI++N+V ++ NA++DMY KC
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TWTTM+ G AIS + + A ++L A K D VA+ ++SA
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA----REVLNAMPKKDIVAWNALISAYE 342
Query: 180 HN 181
N
Sbjct: 343 QN 344
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI--QTSNIMGDEFTIVSIL 89
++ AR+ FD++P+ + W T+I Y ++ F ++ S +++T ++
Sbjct: 81 LEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLI 140
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVK----F 134
A A + +L LG+ + K+ V +D+F N+LI Y C T+K
Sbjct: 141 KAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVV 200
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI G G+ DKAL++F +M +K V VGVLSA
Sbjct: 201 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 243
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ AR+ F+ + +RD +W+ MI G EA+ +F ++Q +N+
Sbjct: 406 SALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVK 465
Query: 80 GDEFTIVSILTARANLGALELGE 102
+ T ++ A ++ G ++ E
Sbjct: 466 PNGVTFTNVFCACSHTGLVDEAE 488
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M NKDV+S+ +++GY N ++ + F++MPER+ W +I GY F E
Sbjct: 282 ELFHKMPNKDVMSWNTLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLE 341
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L+ F+ + I+ ++ T+V++L+A A LGAL+LG+W+ Y N K +++ GNALI
Sbjct: 342 VLSSFKRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALI 401
Query: 125 DMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V F +W T+I GLA+ G AL +FS+M A KPD +
Sbjct: 402 DMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGI 461
Query: 170 AYVGVLSARTH 180
++GVL A TH
Sbjct: 462 TFLGVLCACTH 472
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+FG M ++V+++T+++ G+I ++ AR+ F+ P+RD VLW MI GY+ +
Sbjct: 220 RVFGEMIERNVVAWTSMIKGFILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDLVR 279
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF ++ ++M + ++L AN G +E E + + + V
Sbjct: 280 AQELFHKMPNKDVM----SWNTLLNGYANGGDIEACERLFEEMPERNV------------ 323
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSA 177
F+W +I G A G + L F +ML I P++ V VLSA
Sbjct: 324 --------FSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSA 368
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
I++ + +++ A + FDQ+PE + W M+ GY + RE + LF+++ + +I+ +
Sbjct: 104 IITSFALFKRMRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPN 163
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT------ 135
F+ ++ + + A + GE + ++ K+ + + F G LID+Y + +
Sbjct: 164 CFSFPIVIKSSVKINAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFG 223
Query: 136 ---------WTTMIVGLAISGNGDKALDMF 156
WT+MI G + + + A +F
Sbjct: 224 EMIERNVVAWTSMIKGFILCNDIETARRLF 253
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 26 YINREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
YI +D+ +C F + ++D + W T+I G R +AL LF ++ +
Sbjct: 395 YIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDA 454
Query: 77 NIMGDEFTIVSILTARANLGALELG 101
D T + +L A ++G ++ G
Sbjct: 455 GEKPDGITFLGVLCACTHMGLVDDG 479
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D +S+ ++SG++ Q+ AR F++M ++ WT ++ GY R+ + +
Sbjct: 173 KVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYAD 232
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F+ +Q I DE ++VS+L A A LGALELG+WI Y DK +I NALI+
Sbjct: 233 ALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIE 292
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W+TMIVGLA G +A+++F +M +A I+P+ +
Sbjct: 293 MYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIIT 352
Query: 171 YVGVLSARTH 180
+VG+LSA H
Sbjct: 353 FVGLLSACAH 362
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ A++ Y +D R+ FDQM ERD + W+TMI G R EA+ LFQE+
Sbjct: 282 RNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEM 341
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
Q + I + T V +L+A A+ G L G Y + K +I G ++ Y C V
Sbjct: 342 QKAKIEPNIITFVGLLSACAHAGLLNEG---LRYFESMKRDYNIEPG---VEHY-GCLVN 394
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +SG D+AL++ +M +KPD + +LS+ R+H+
Sbjct: 395 L--------LGLSGRLDQALELIKKM---PMKPDSAIWGSLLSSCRSHS 432
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 51/201 (25%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-----QTSNIMGDE 82
+ + + A F ++ + + L+ MI Y + A+T+++++ + I D+
Sbjct: 58 HHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDK 117
Query: 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------ 130
FT ++ + A L +LG+ + ++ K K++ N+L++MY KC
Sbjct: 118 FTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEE 177
Query: 131 ----------------------------------TVKFTWTTMIVGLAISGNGDKALDMF 156
F+WT ++ G A G AL+ F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 157 SQMLRASIKPDEVAYVGVLSA 177
+M I+PDE++ V VL A
Sbjct: 238 RRMQMVGIEPDEISLVSVLPA 258
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD++S+T ++ GY + D A+ FD MP +D W +I Y + + +EA
Sbjct: 294 LFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEA 353
Query: 67 LTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF E+Q S DE T+VS L+A A LGA++LG WI YI K +K + +LID
Sbjct: 354 LELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLID 413
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC +V+ F W+ MI GLA+ G+G A+ +FS+M +KP+ V
Sbjct: 414 MYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVT 473
Query: 171 YVGVLSARTH 180
+ +L A +H
Sbjct: 474 FTNILCACSH 483
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++ Y ++ + + F +P RD V W +MI +++ EAL LFQE++
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK 133
T N+ + T+V +L+A A E G W+ +YI++N++ + NA++DMY KC +V+
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQM-------------------- 159
+WTTM+VG A G D A +F M
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349
Query: 160 ------------LRASIKPDEVAYVGVLSA 177
L + KPDEV V LSA
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSA 379
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILT 90
+D A+Q FDQ+P + W T+I Y + ++L +F + + S D+FT ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A + L L G+ + K + +D+F N+LI Y KC +
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI G ++AL++F +M ++KP+ + VGVLSA
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSA 246
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/189 (35%), Positives = 119/189 (62%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ +D++S+ ++ GY +VD+AR+ F+ M +RD W++M+ Y + R ++A
Sbjct: 128 VFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDA 187
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L L++E++ + + D T+VS+L+A +++GAL +G + +++ N V+ D+ G ALIDM
Sbjct: 188 LELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDM 247
Query: 127 YCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +V+ TW++MI+GLA G G AL +FS+ML ++P+EV +
Sbjct: 248 YAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTF 307
Query: 172 VGVLSARTH 180
+GVL + TH
Sbjct: 308 IGVLISCTH 316
Score = 42.4 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA++ Y ++ + + F MP +D + W++MI G +AL+LF +
Sbjct: 237 DVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRML 296
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
+ + +E T + +L + +LG + G+
Sbjct: 297 SEGLQPNEVTFIGVLISCTHLGLVSDGK 324
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 15/177 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V+ Y E + +A + FD++ +R+ V W+TMI GY R+ EAL LF+++Q + ++
Sbjct: 200 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 259
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
DE T+VS+++A A GAL+ G+W+ YI+K ++ D+ AL++MY KC
Sbjct: 260 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 319
Query: 131 ----TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
VK T W++MIVGLAI+G + AL+ F +M A +KP+ V ++GVLSA H+
Sbjct: 320 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 376
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNR-FREALTLFQE-IQTSNIMGDEFTIVSIL 89
+D AR+ F Q+ + W +MI G + +E + LF++ ++ + FT+ +L
Sbjct: 109 IDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVL 168
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKF 134
A + + ALE G+ + + K+ + F AL++ Y KC
Sbjct: 169 KACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLV 228
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+TMI G A G ++AL +F M +A + PDEV V V+SA
Sbjct: 229 AWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISA 271
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
TA+V+ Y ++ A++ FD MP +D W++MI G L +N E AL F ++ + +
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 359
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------CT 131
+ T + +L+A A+ G + G + + + + + ++D+ C+ CT
Sbjct: 360 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACT 419
Query: 132 VKFT---------WTTMIVGLAISGNGDKA 152
+ T W T++VG S N DK+
Sbjct: 420 LVETMPISPNPVIWRTLLVGCKKSKNLDKS 449
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 114/194 (58%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRF 63
++F K + A+++GY + AR F+ MPE RD V WTT+I GY + +
Sbjct: 183 KLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSP 242
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGN 121
EA+TLF+ + N+ DE I+++L+A A+LGAL+LGEWI YI+K NK++ + N
Sbjct: 243 NEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCN 302
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
+LIDMY K TWTT+I GLA+ G G +ALD+FS M +A +KP
Sbjct: 303 SLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKP 362
Query: 167 DEVAYVGVLSARTH 180
+EV + VLSA +H
Sbjct: 363 NEVTLIAVLSACSH 376
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K V +++ Y + ARQ F M + + WTT+I G +EAL +F +
Sbjct: 296 KTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCM 355
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALIDM 126
+ + + +E T++++L+A +++G +ELG I T + K ++ I +ID+
Sbjct: 356 EKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDL 409
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI G+++ EA
Sbjct: 128 VFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEA 187
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W Y+ +N++ N+LID+
Sbjct: 188 LAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDL 247
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN +++L F +M KPD V +
Sbjct: 248 YCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTF 307
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 308 TGALTACSH 316
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 254 VEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTA 313
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G ++ + ++ I L+D+Y + +G +
Sbjct: 314 CSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSR----------------AGRLE 357
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
A+ + M +KP+EV +L+A R H
Sbjct: 358 DAIKVVESM---PMKPNEVVIGSLLAACRNH 385
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 107/179 (59%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+S+T + +GY++ +D+AR FDQM +D V W +MI Y++ ++A+ LF+++
Sbjct: 238 RDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKM 297
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ + DE T+VS+L A A+L L+ G +I +N + D+F G ALIDMY KC
Sbjct: 298 ENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSL 357
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTWTT I GLA G+GDKAL +F++M + IKP++ +V VL A
Sbjct: 358 EEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMA 416
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 49/212 (23%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV A++ Y + QV AR+ FD MP RD W T++ Y + E L LF+
Sbjct: 106 DSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKR 163
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ I GD ++V + +A +G E G+ + Y+ K ++ + NAL+ +Y KC
Sbjct: 164 MMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGE 223
Query: 131 --------------------TVKF-------------------------TWTTMIVGLAI 145
T+ F +W +MI
Sbjct: 224 MDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVK 283
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ + KA+++F +M ++PDE V VL+A
Sbjct: 284 AKHPKKAIELFRKMENEMVEPDETTMVSVLAA 315
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D+ TA++ Y ++ A F +M RD WTT I+G +AL+LF E+
Sbjct: 339 QDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEM 398
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCK 129
+ I ++ T VS+L A + G ++ G + K ++ +++ I L+D+ +
Sbjct: 399 EKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSR 455
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 50 WTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
W +I + R A+ ++ I+ + D++T ++L A +G+L G+ + ++
Sbjct: 41 WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100
Query: 109 DKNKVKNDIFAGNALIDMYCKCTVKFT----------------WTTMIVGLAISGNGDKA 152
K + +D++ GNAL+ +Y T + T W T++ A + N +
Sbjct: 101 TKTGLDSDVYVGNALLHLY-GSTGQVTDARRLFDGMPHRDLASWNTLLG--AYNDNAVEV 157
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
L +F +M+ I D ++ V V SA
Sbjct: 158 LVLFKRMMYEGIGGDHISMVIVFSA 182
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L +F M K++++ TA+V+GY Q++ AR F+QM ++D V W+ MI GY
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EAL LF E+Q+ I D+ T++S++TA A+LGAL+ +WI ++DKN +
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN 393
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY KC +WT MI A+ G+ AL F QM +I+
Sbjct: 394 NALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE 453
Query: 166 PDEVAYVGVLSARTH 180
P+ + +VGVL A +H
Sbjct: 454 PNGITFVGVLYACSH 468
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 50/226 (22%)
Query: 5 LEIFGTMK----NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
LEI G + D T +V Y ++ AR FD+M RD V W+ MIDGY +
Sbjct: 142 LEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQS 201
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F +AL LF+E++ N+ DE + ++L+A G L G+ I +I +N + D
Sbjct: 202 GLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ 261
Query: 121 NALIDMYCKC---------------------TVKFT------------------------ 135
+AL+ MY C T T
Sbjct: 262 SALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLV 321
Query: 136 -WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ MI G A S + +AL++F++M IKPD+V + V++A H
Sbjct: 322 CWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K VIS A+ S +D A F+ +P+ + L + R + L +++ +
Sbjct: 60 KLVISSCALSS------SLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERM 113
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+T + D F+ +L A + + +L G I K +D F L+ MY C
Sbjct: 114 RTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRI 173
Query: 131 ---TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ F TW+ MI G SG + AL +F +M +++PDE+ VLSA
Sbjct: 174 AEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSA 232
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ AR+ FD+MP ++ + WT MI + AL F +++ NI
Sbjct: 395 ALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEP 454
Query: 81 DEFTIVSILTARANLGALELGEWI 104
+ T V +L A ++ G +E G I
Sbjct: 455 NGITFVGVLYACSHAGLVEEGRKI 478
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QV+ A + FD+MPERD + WT MI+G+++ EA
Sbjct: 125 VFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEA 184
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A +LGAL G W+ Y+ KN+I N+LID+
Sbjct: 185 LAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDL 244
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 245 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 304
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 305 TGALTACSH 313
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ AR+ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 251 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTA 310
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + +T +++ I L+D+Y + +G +
Sbjct: 311 CSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR----------------AGRLE 354
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL++ M +KP+EV +L+A R H
Sbjct: 355 DALNVVQSM---PMKPNEVVIGSLLAACRNH 382
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 116/187 (62%), Gaps = 17/187 (9%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G ++++++ TA+V Y ++D AR+ FD+M RD V W+ MI GY + +R REAL
Sbjct: 302 GMLRSRNLA--TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALA 359
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F E+Q + + ++ T+VS+L+A A LGALE G+W+ +YI + + + G AL+D Y
Sbjct: 360 IFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYA 419
Query: 129 KC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
KC VK +TWT +I G+A +G +AL++FS ML A+I+P +V ++G
Sbjct: 420 KCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIG 479
Query: 174 VLSARTH 180
VL A +H
Sbjct: 480 VLLACSH 486
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D +++ Y + V A F + + + W MI GY++ ++E + +F+ +
Sbjct: 205 DQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML 264
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
DE T++S+ TA LG LG+WI Y ++ + AL+DMY KC
Sbjct: 265 EVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G S +AL +F++M + P++V V VLSA
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSA 382
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 16/151 (10%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELG 101
P R + +I +LR +AL LF E + + + D+ T+ + + + + + L +G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVK----FTWTTMIVGLAIS 146
++ Y K D F N+LI MY C TV+ W MI G +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250
Query: 147 GNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G+ + ++MF ML DEV + V +A
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATA 281
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 15/184 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF ++F + D++ TA+VS V AR+ FD MP RD++ W+ MI GY +
Sbjct: 135 LGFCRQVFDLIPQPDLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQC 194
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ REAL LF +Q ++ E ++VS+L+A + LGAL+ G W YI++NK+ + G
Sbjct: 195 GQSREALALFHLMQLEDVKVSEVSMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLG 254
Query: 121 NALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC +K +TW++ I GLA++G G K L++FS M + +
Sbjct: 255 TALVDMYAKCGDMNKAMEVFWAMKEKNVYTWSSAIYGLAMNGAGHKCLELFSLMKKDGVL 314
Query: 166 PDEV 169
P+E+
Sbjct: 315 PNEL 318
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F N D IS+ +++SG + V+ AR FD MPE+D V W+ +I GY + + F E
Sbjct: 360 KLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSE 419
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF E+Q I DE +VS+++A +L AL+ G+W+ YI KN +K ++ G L+D
Sbjct: 420 TLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLD 479
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W +I+GLA++G +++LDMFS+M + P+E+
Sbjct: 480 MYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEIT 539
Query: 171 YVGVLSARTH 180
++GVL A H
Sbjct: 540 FMGVLGACRH 549
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 77/243 (31%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER----------------------------- 45
D +S+ +I++GY+ + V+ A+ FDQMP+R
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265
Query: 46 --DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103
D V W+ +I GY + + EAL +F E+ + + DE +VS+L+A A+L ++ G+
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 325
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGN 148
I + + +++ + NALI MY + +W +MI G G+
Sbjct: 326 IHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGS 385
Query: 149 GDKA-------------------------------LDMFSQMLRASIKPDEVAYVGVLSA 177
+KA L +F +M I+PDE V V+SA
Sbjct: 386 VEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445
Query: 178 RTH 180
TH
Sbjct: 446 CTH 448
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D + Q FD++ + +W TM+ Y++ N +AL L++ + +N+ D +T ++ A
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 92 RANLGALEL-GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A + LE G+ I ++ K +D++ N LI+MY C +
Sbjct: 151 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASI 164
W +++ G G+ ++A +F QM + +I
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNI 238
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 24/146 (16%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+ P D V W +++ GY++ EA +F ++ NI+ IV
Sbjct: 195 ARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVL------- 247
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
LG ++G+ ++ + N++ DM +W+ +I G +G ++AL
Sbjct: 248 LG--KMGQVMEAWKLFNEMDEK--------DM-------VSWSALISGYEQNGMYEEALV 290
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
MF +M ++ DEV V VLSA H
Sbjct: 291 MFIEMNANGMRLDEVVVVSVLSACAH 316
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEI 73
+VI T ++ Y+ V+ A + F+ M E+ W +I G L VN E +L +F E+
Sbjct: 470 NVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG-LAVNGLVERSLDMFSEM 528
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDM 126
+ + ++ +E T + +L A ++G ++ G + I+K+ ++ ++ ++D+
Sbjct: 529 KNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDL 582
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S+T ++ G ++ Q+D A F+QMP R+ V WT MI Y++ R E
Sbjct: 175 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDE 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+ +Q ++ +EFTIV++L A LG+L +G W+ Y KN D F G ALID
Sbjct: 235 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALID 294
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEV 169
MY KC TW +MI L + G G++AL +F AS++PD +
Sbjct: 295 MYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAI 354
Query: 170 AYVGVLSA 177
+VGVLSA
Sbjct: 355 TFVGVLSA 362
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSIL 89
+ A F+Q+ W MI ++ REAL LF + S+ D+FT ++
Sbjct: 67 ETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVI 126
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
A ++ LG + K ND+F N L+D+Y KC
Sbjct: 127 KACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIV 186
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+WTTM+ GL + D A +F+QM ++ V++ +++A N
Sbjct: 187 SWTTMLYGLVSNSQLDSAEIVFNQMPMRNV----VSWTAMITAYVKN 229
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M DV+S+T+++ G+ V+ AR+ FDQMPE++ V W+TMI GY + N F +A
Sbjct: 176 IFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+ +Q+ + +E +VS++++ A+LGALELGE Y+ KN + ++ G AL+DM
Sbjct: 236 VELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDM 295
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +WT +I GLA+ G +++L F+ M+ A + P ++ +
Sbjct: 296 YARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITF 355
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 356 TAVLSACSH 364
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F Q+ + ++ MI G+ +A + + Q ++ D T ++ +
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------KCTVKF---------TW 136
L + +G +I K+ + D++ N+L+ MY T+ F +W
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 137 TTMIVGLAISGNGDKALDMFSQM 159
T+MI G G+ + A +F QM
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQM 211
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TA+V Y +D A F+ +PERD + WT +I G +L F +
Sbjct: 285 NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMV 344
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + + T ++L+A ++ G +E G
Sbjct: 345 EAGLTPRDITFTAVLSACSHGGLVERG 371
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 119/191 (62%), Gaps = 17/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++ GY R +V +AR+ FD +RD W++MI Y + R +E
Sbjct: 44 KVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKE 103
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L++E+ ++I+ D T+VS+++A ++LGAL +G + +++ N+++ D+ G ALID
Sbjct: 104 ALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALID 163
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC V+ TW++MI+GLA G G ++L +FS+M+ +KP+ V
Sbjct: 164 MYAKCGDIESAQRVFDRMPEKDVQ-TWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGV 222
Query: 170 AYVGVLSARTH 180
+VGVL A TH
Sbjct: 223 TFVGVLIACTH 233
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 19/163 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A++ FD+MPE+D W++MI G E+L+LF ++ + +
Sbjct: 159 TALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMK 218
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T V +L A ++G + G K Y + N++ ++ Y C V
Sbjct: 219 PNGVTFVGVLIACTHVGLVSEG---KKYF---RSMNEVHGIEPTVEHY-GCMVDL----- 266
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L SG+ ++A + M + +PD + + +L A R H
Sbjct: 267 ---LGRSGHVEEARQLIRSM---TFEPDTIIWRALLGACRIHK 303
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V+ Y V ARQ FD++P+R+ V W +I GY FR+ + +F+E+Q +
Sbjct: 181 TALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK 240
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
E T+V +L A A+LGAL G WI YID N+++ ++F G ALIDMY KC V
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKI 300
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+TW +I G A++G G+ AL FS+M+ KPDEV ++GVL A H
Sbjct: 301 FKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCH 356
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D L +MI Y N+ ++ ++ ++ + I D T ++L + A L ELG+ I
Sbjct: 106 DSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIH 165
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGD 150
I + +++++ AL++MY C+ +W +I G +
Sbjct: 166 CCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFR 225
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSARTH 180
K +D+F +M A KP EV VGVL A H
Sbjct: 226 KVIDVFREMQIAGAKPVEVTMVGVLLACAH 255
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y VD A + F M ++ W +I GY R AL F +
Sbjct: 282 TALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFK 341
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
DE T + +L A + G + G +TY K + F I+ Y M
Sbjct: 342 PDEVTFLGVLCACCHQGLVNEG---RTYFTSMK---EEFGLRPRIEHY---------GCM 386
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G D+A + M S++PD + + +L A R H
Sbjct: 387 VDLLGRAGFLDEAQQLIQAM---SMQPDPIIWRELLGACRIH 425
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++VIS+T+++ GY + V AR FD MPER+ W MI GY + N+ EA
Sbjct: 207 LFDKMPARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEA 266
Query: 67 LTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF E+Q+ + D+ T+VS+L A A+LGAL+LG WI + K+ I AL+D
Sbjct: 267 LKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVD 326
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC + +W +I G A++G D+AL FS+M R +KP++V
Sbjct: 327 MYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVT 386
Query: 171 YVGVLSARTH 180
+ VLSA H
Sbjct: 387 MISVLSACNH 396
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 29/175 (16%)
Query: 22 IVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIM 79
I S Y + + ARQ FD P + D L +MI ++ + +F E+ TL+Q+++ + +
Sbjct: 26 IPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLYQDLRKGTGFL 85
Query: 80 GDEFTIVSILTARANLGALELGEW----IKTYIDKNKVKNDIFAGNALIDMYCK----CT 131
D FT TA A L + W I ++ K D++ AL+DMY K C
Sbjct: 86 PDNFT----FTALAKSCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCM 141
Query: 132 VK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+ +WT +I G SG+ A +F QM + D AY +L
Sbjct: 142 ARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQM----PEKDSAAYNAML 192
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR+ FD MP+++ W +I+G+ EALT F E++ +
Sbjct: 322 TALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVK 381
Query: 80 GDEFTIVSILTARANLGALELGE-WIKT 106
++ T++S+L+A + G +E G+ W K
Sbjct: 382 PNDVTMISVLSACNHGGLVEEGKRWFKA 409
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ +++ Y ++ AR FD+MP R+ V W+ M++GY++ REAL +F +Q
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
++ D+ +V +L A A GALE G+W+ Y+ + +K ++F G AL+DMY KC
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
WTTMI GLA+ G G +A+ +F+QM + I+PD++A++GVL A T
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321
Query: 180 H 180
H
Sbjct: 322 H 322
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +V +A F++M ++ + WTTMI G R EA+ LF ++++S I
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIR 307
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
D+ + +L A + G ++ G E + + K +K I ++D+ +
Sbjct: 308 PDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 358
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 117/191 (61%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVS-GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M+ +DV ++ ++ Y V+ AR+ FD MPER+ V WT+MI GY +V +F++
Sbjct: 255 VFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQ 314
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+++Q S + D+ TI +++++ +GAL+LG ++ Y D + + I N+LID
Sbjct: 315 AVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLID 374
Query: 126 MYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEV 169
MY KC VK F+WT MI+G A++G +ALD+F+QM + P+E+
Sbjct: 375 MYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEI 434
Query: 170 AYVGVLSARTH 180
++GVL++ +H
Sbjct: 435 TFLGVLTSCSH 445
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + KD Y +++ Y+ +V++A + F+ MPER+ M+ GY A
Sbjct: 161 VFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSA 220
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID- 125
+F + +N + + ++++ A G+++ ++ D + + D+ N +I
Sbjct: 221 KHVF---EMANGVVNMVLCTAMISGFAKTGSVDDA---RSVFDGMR-QRDVATWNVMIGV 273
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC + WT+MI G G +A+ +F M + +K D+
Sbjct: 274 MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDAT 333
Query: 171 YVGVLSA 177
V+S+
Sbjct: 334 IATVVSS 340
Score = 35.8 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 64 REALTLFQEIQTS--NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
R+A+ L+ ++ + FT+ S+L A A L GE + ++ KN + D
Sbjct: 84 RDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIAT 143
Query: 122 ALIDMYCKC 130
L+D+Y +C
Sbjct: 144 TLVDLYARC 152
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++ + +++ ++ GY+ QVD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 122 VFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEA 181
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 182 LVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDL 241
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 242 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 301
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 302 TGALTACSH 310
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ AR+ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 248 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTA 307
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + +T + I L+D+Y + +G +
Sbjct: 308 CSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSR----------------AGRLE 351
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL + M +KP+EV +L+A RTH
Sbjct: 352 DALKVIESM---PMKPNEVVIGSLLAACRTH 379
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 74 VFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEA 133
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G WI Y+ KN++ N+LID+
Sbjct: 134 LAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDL 193
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +G+ ++L F +M KP+ V +
Sbjct: 194 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTF 253
Query: 172 VGVLSARTH 180
G L+A H
Sbjct: 254 TGALAACNH 262
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+++Q + T L A
Sbjct: 200 VEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAA 259
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
++G +E G + ++ ++ I L+D+Y + +G +
Sbjct: 260 CNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSR----------------AGRLE 303
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL + M +KP+EV +L+A
Sbjct: 304 DALKVVQSM---PMKPNEVVIGSLLAA 327
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F + F + D+ S+ AI+ + IAR+ FDQMPE++ + W+ MI GY+
Sbjct: 113 FARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172
Query: 63 FREALTLFQEIQT---SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
++ AL+LF+ +QT S + +EFT+ S+L+A A LGAL+ G+W+ YIDK +K D+
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232
Query: 120 GNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G +LIDMY KC W+ MI ++ G ++ L++F++M+
Sbjct: 233 GTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDG 292
Query: 164 IKPDEVAYVGVLSARTH 180
++P+ V +V VL A H
Sbjct: 293 VRPNAVTFVAVLCACVH 309
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV+ T+++ Y ++ A+ FD + PE+D + W+ MI + E L LF +
Sbjct: 229 DVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARM 288
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ + T V++L A + G + G E+ K +++ V I ++D+Y +
Sbjct: 289 VNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSR 345
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F N+DVI++TA+++GY+ QV I R+ FD+MPER+ V W+ MI GY+RV F E
Sbjct: 167 KLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEE 226
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF + S + IV + A A+LGAL+ G WI YI +N++ D G ALID
Sbjct: 227 ALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALID 286
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +T +I GLA G A+++F +M + P+EV
Sbjct: 287 MYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVT 346
Query: 171 YVGVLSA 177
+V VL+A
Sbjct: 347 FVSVLNA 353
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 5 LEIFGTMKNK----DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
L + GT+K+ +IS+ A+ S N+ + A + F + R +W T+I +
Sbjct: 33 LTVSGTLKDPYAAAKIISFCALSS---NQFSLSHAYRLFLGLRHRSTFIWNTVIRAFAEK 89
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI--F 118
N R+A+ LF+ + SN + + +T + A +L L LG + + K+ + F
Sbjct: 90 NEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLG--LACHCQSIKLGWEFYDF 147
Query: 119 AGNALIDMY----CKCTVK-----------FTWTTMIVGLAISGNGDKALDMFSQM 159
N L+ M+ C + + TWT +I G +G ++F +M
Sbjct: 148 VQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKM 203
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + A++ Y ++IA F ++ RD ++T +I G + A+ LF+ +
Sbjct: 277 DRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMH 336
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-----KTYIDKNKVKN 115
+ ++ +E T VS+L A + +G ++ G I K Y D+ +V++
Sbjct: 337 SEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQH 382
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M +S++ ++SGY VD AR FD+ PE+D +W MI GY++ + F+E
Sbjct: 161 HVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKE 220
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF+ +Q ++++ DE VSIL+A A+LGAL++G WI Y+++ V I +L+D
Sbjct: 221 GLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLD 280
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC K W MI GLA+ G+G AL MFS+M + IKPD++
Sbjct: 281 MYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDIT 340
Query: 171 YVGVLSARTHN 181
++ V +A +++
Sbjct: 341 FIAVFTACSYS 351
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y +++A++ FD MPERD V W MI G AL +F E++ + I
Sbjct: 276 TSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIK 335
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T +++ TA + G G
Sbjct: 336 PDDITFIAVFTACSYSGMAHEG 357
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 48/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQC--FDQMPERDYVLWTTMIDGYLRVNRF 63
++F T + + + + +++ + Q + C F+++ + T+I +L F
Sbjct: 27 QVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNF 86
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+F ++ + + D +TI +L A A L LG+ + Y K + DIF GN+L
Sbjct: 87 YGTFHVFTKMLHNGLGPDNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSL 146
Query: 124 IDMYCKC---------------TVKFTWTTMIVGLAISGNGDKA---------------- 152
+ MY C +W+ MI G A G+ D A
Sbjct: 147 MAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWG 206
Query: 153 ---------------LDMFSQMLRASIKPDEVAYVGVLSARTH 180
L +F + + PDE +V +LSA H
Sbjct: 207 AMISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAH 249
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+E+ ++ +V+ + ++ G + + A+ FD+MP+R V W MI GY + F
Sbjct: 193 MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFI 252
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA+ LFQE+Q+SNI + T+VS+L A A +GALELG+WI Y KNK++ D G+AL+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALV 312
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC TW+ +I A+ G + A+ F M +A + P++V
Sbjct: 313 DMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372
Query: 170 AYVGVLSARTH 180
AY+G+LSA +H
Sbjct: 373 AYIGILSACSH 383
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
T +I + +VI + A S +D AR F QMPE + W T++ N
Sbjct: 45 TGQIQDPLTAAEVIKFCAFSS-----RDIDYARAVFRQMPEPNCFCWNTILRVLAETNDE 99
Query: 64 R---EALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
EAL LF + + + FT S+L A A L G+ I I K D F
Sbjct: 100 HLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFV 159
Query: 120 GNALIDMYCKCTV 132
+ L+ MY C V
Sbjct: 160 ISNLVRMYVMCAV 172
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D + +A+V Y +D A Q F+ +P+R+ + W+ +I + R +A+
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
F + + + ++ + IL+A ++ G +E G +++ K + I+ Y
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVK------VVGLQPRIEHY- 410
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
C V L +G+ ++A ++ M I+PD+V + +L A
Sbjct: 411 GCMVDL--------LGRAGHLEEAEELIRNM---PIEPDDVIWKALLGA 448
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M DV+S++ +V ++ ++++ARQ FD+MPERD V WT M+ GY + R RE
Sbjct: 401 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSRE 460
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E++ + DE +V +++A +LG LE G + YID+N + NALID
Sbjct: 461 ALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALID 520
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +MI A GN + A +F+ ML + I+PD V
Sbjct: 521 MYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVT 580
Query: 171 YVGVLSARTHN 181
++ +L+A TH
Sbjct: 581 FLALLTAYTHK 591
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD+ S+T ++ GY R D AR FD MP +D W +I Y + + +EA
Sbjct: 290 LFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEA 349
Query: 67 LTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F E+Q S DE T+VS L+A A LGA+++G WI YI K +K + +LID
Sbjct: 350 LAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLID 409
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +V F W+ MI GLA+ G G A+D+F +M ++P+ V
Sbjct: 410 MYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVT 469
Query: 171 YVGVLSARTH 180
+ +L A +H
Sbjct: 470 FTNLLCACSH 479
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y + +D A F ++ E+D V W +MI G++ +AL LFQ ++
Sbjct: 166 DLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMK 225
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
N+ ++ T+V +L+A A LE G + YI++N + ++ NA++DMY K
Sbjct: 226 AENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLE 285
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASI--------------- 164
F+WTTMI G A + D A +F M R I
Sbjct: 286 DARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGK 345
Query: 165 -----------------KPDEVAYVGVLSA 177
KPDEV V LSA
Sbjct: 346 PKEALAIFHELQLSKTAKPDEVTLVSTLSA 375
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILT 90
+D AR+ F+++ + + W T+I + +L +F + + S ++FT ++
Sbjct: 81 LDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIK 140
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------VKF------T 135
A A + +L + I K + +D+F N+LI Y C VK +
Sbjct: 141 AAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVS 200
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI G + G DKAL++F M +++P++V VGVLSA
Sbjct: 201 WNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSA 242
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y +V+ A F + RD +W+ MI G R R A+ LF E+Q + +
Sbjct: 405 TSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVR 464
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T ++L A ++ G + G ++ + K F L K V + +
Sbjct: 465 PNAVTFTNLLCACSHTGLVNEGRMFFNQMESSTFKRLQFHDLVLSRTIAKSHVAYDSAEV 524
Query: 140 IVGL 143
VG
Sbjct: 525 SVGF 528
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 26/201 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++DV+S+ ++SGY +V+ + F++MP R+ W +I GY+R F+E
Sbjct: 240 ELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKE 299
Query: 66 ALTLFQ-----------EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114
AL F+ E ++ +++T+V++LTA + LG LE+G+W+ Y + K
Sbjct: 300 ALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYK 359
Query: 115 NDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
++F GNALIDMY KC V TW T+I GLA+ G+ AL +F +M
Sbjct: 360 GNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERM 419
Query: 160 LRASIKPDEVAYVGVLSARTH 180
RA +PD V +VG+LSA TH
Sbjct: 420 KRAGERPDGVTFVGILSACTH 440
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 24/155 (15%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M++K+V ++TAIV+ ++ + AR+ FD P+RD VLW ++ GY+ +
Sbjct: 178 KVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVA 237
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF + ++M + ++L+ A G +E ++K + ++ V+N
Sbjct: 238 ARELFDRMPDRDVM----SWNTVLSGYATNGEVE--SFVKLF-EEMPVRN---------- 280
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160
++W +I G +G +AL+ F +ML
Sbjct: 281 -------VYSWNGLIGGYVRNGLFKEALECFKRML 308
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+ + + W M GY + N + + LF + + + FT ++ + A
Sbjct: 73 ARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCAT 132
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
A + GE + + K K++ F G ALI MY
Sbjct: 133 ANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMY 165
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ A FD + +D + W T+I+G +AL+LF+ ++ +
Sbjct: 367 ALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERP 426
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T V IL+A ++G V+N + +++D Y + M+
Sbjct: 427 DGVTFVGILSACTHMGL---------------VRNGLLHFQSMVDDYSIVPQIEHYGCMV 471
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G DKA+D+ +M ++PD V + +L A
Sbjct: 472 DLLGRAGLIDKAVDIVRKM---PMEPDAVIWAALLGA 505
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+E+ ++ +V+ + ++ G + + A+ FD+MP R V W MI GY + F
Sbjct: 193 MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFI 252
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA+ LFQE+Q+SNI + T+VS+L A A +GALELG+WI Y KNKV+ D G+AL+
Sbjct: 253 EAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALV 312
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC TW+ +I A+ G + A+ F M +A + P++V
Sbjct: 313 DMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDV 372
Query: 170 AYVGVLSARTH 180
AY+G+LSA +H
Sbjct: 373 AYIGILSACSH 383
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
T +I + +VI + A S +D AR F QMPE + W T++ N
Sbjct: 45 TGQIQDPLTAAEVIKFCAFSS-----RDIDYARAVFRQMPEPNCFCWNTILRILAETNDE 99
Query: 64 R---EALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
EAL LF + + + FT S+L A A L G+ I I K D F
Sbjct: 100 HLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFV 159
Query: 120 GNALIDMYCKCTV 132
+ L+ MY C V
Sbjct: 160 ISNLVRMYVMCAV 172
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D + +A+V Y +D A Q F+ +P+R+ + W+ +I + R +A+
Sbjct: 298 KNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
F + + + ++ + IL+A ++ G +E G +++ K + I+ Y
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVK------VVGLQPRIEHY- 410
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
C V L +G+ ++A ++ M I+PD+V + +L A
Sbjct: 411 GCMVDL--------LGRAGHLEEAEELIRNM---PIEPDDVIWKALLGA 448
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 40/190 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF M K VI +T++VSGY+N Q+D AR+ F++ P RD VLWT MI+GY++ NRF +
Sbjct: 223 QIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 282
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+E+Q + D FT+V++LT D G ALI+
Sbjct: 283 AVALFREMQIKRVSPDRFTLVALLT-------------------------DAVVGTALIE 317
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +WT++I GLA++G KAL++F++M++ +KPD++
Sbjct: 318 MYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDIT 377
Query: 171 YVGVLSARTH 180
++GVLSA +H
Sbjct: 378 FIGVLSACSH 387
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
++ +I + + FR+A+ LF++++ + D FT + A LG + GE + ++
Sbjct: 99 IYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158
Query: 109 DKNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKAL 153
K+ ++ D + N+L+DMY + V+ +W +I G + A+
Sbjct: 159 VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAV 218
Query: 154 DMFSQML 160
D+F Q+
Sbjct: 219 DVFRQIF 225
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y ++ + + F+ + E+D WT++I G + +AL LF E+
Sbjct: 308 DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMV 367
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + D+ T + +L+A ++ G +E G
Sbjct: 368 QTGVKPDDITFIGVLSACSHGGLVEEG 394
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 107/191 (56%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD++S+T ++ GY D AR+ FD MP D W +I Y + + +EA
Sbjct: 289 LFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEA 348
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F+E+Q N +E T+ S L A A LGA++LG WI YI K +K + +LID
Sbjct: 349 LAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLID 408
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +V+ F W+ MI GLA+ G+G A+D+FS+M +KP+ V
Sbjct: 409 MYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVT 468
Query: 171 YVGVLSARTHN 181
+ +L A +H+
Sbjct: 469 FTNLLCACSHS 479
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y + +D A F ++ E+D V W +MI G+++ EAL LF+ ++
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
N + T+V +L+A A LE G W YI++N + ++ NA++DMY KC
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+WTTMI G A G+ D A +F M R I
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI 329
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSIL 89
+D A + FDQ+P + W T+I + + + L +F Q + S + +T ++
Sbjct: 79 SLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVI 138
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-------------KCTVK--F 134
A + +L G+ I + K +D+F N+LI Y K K
Sbjct: 139 KAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIV 198
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI G G+ ++AL +F +M + +P+ V VGVLSA
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A + F + RD +W+ MI G R A+ LF ++Q + +
Sbjct: 404 TSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVK 463
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T ++L A ++ G ++ G
Sbjct: 464 PNAVTFTNLLCACSHSGLVDEG 485
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D IS+ +++SGY+ +++ AR FD MP++D V W+ MI GY + +RF E L LFQE+Q
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CTV 132
DE +VS+++A +L AL+ G+WI YI KN +K +I G LI+MY K C
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVE 473
Query: 133 KF-------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW +I+GLA++G DK+L FS+M + P+E+ +V VL A
Sbjct: 474 DALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACR 533
Query: 180 H 180
H
Sbjct: 534 H 534
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 46/221 (20%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+++ M ++VI+ +++ + + V+ A + F++M ++D V W+ +I Y + + E
Sbjct: 213 DVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEE 272
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ + IM DE ++S+L+A + L + G+ + + K ++ + NALI
Sbjct: 273 ALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIH 332
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKA------------------ 152
MY C + +W +MI G G +KA
Sbjct: 333 MYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAM 392
Query: 153 -------------LDMFSQMLRASIKPDEVAYVGVLSARTH 180
L +F +M KPDE V V+SA TH
Sbjct: 393 ISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTH 433
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ + Q F + + + TM+ GY++ N +A+ +++ + SN+ D +T IL
Sbjct: 76 INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYT-YPILFQ 134
Query: 92 RANLGALEL-GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
++ E G+ I+ ++ K +D++ N LI+MY C +
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194
Query: 136 WTTMIVGLAISGNGDKALDMFSQM 159
W +M+ G + GN ++A D++ +M
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRM 218
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I T +++ Y+ V+ A + F + E+ W +I G ++L F E++
Sbjct: 455 NIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMK 514
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDM 126
+ +E T V++L A ++G ++ G + I ++K+ +I ++D+
Sbjct: 515 EHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDL 567
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 26/166 (15%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV +++ Y + AR+ FD D V W +M+ GY+ V EA ++
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCT 131
+ N++ IV + + N + E K + N++K D+ + +ALI Y +
Sbjct: 218 MPERNVIASNSMIV-LFGKKGN-----VEEACKLF---NEMKQKDLVSWSALISCYEQNE 268
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ ++AL +F +M I DEV + VLSA
Sbjct: 269 MY----------------EEALILFKEMNANGIMVDEVVVLSVLSA 298
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 15/177 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V+ Y E + +A + FD++ +R+ V W+TMI GY R+ EAL LF+++Q + ++
Sbjct: 131 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 190
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
DE T+VS+++A A GAL+ G+W+ YI+K ++ D+ AL++MY KC
Sbjct: 191 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 250
Query: 131 ----TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
VK T W++MIVGLAI+G + AL+ F +M A +KP+ V ++GVLSA H+
Sbjct: 251 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVN-RFREALTLFQE-IQTSNIMGDEFTIVSIL 89
+D AR+ F Q+ + W +MI G + +E + LF++ ++ + FT+ +L
Sbjct: 40 IDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVL 99
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKF 134
A + + ALE G+ + + K+ + F AL++ Y KC
Sbjct: 100 KACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLV 159
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+TMI G A G ++AL +F M +A + PDEV V V+SA
Sbjct: 160 AWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISA 202
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
TA+V+ Y ++ A++ FD MP +D W++MI G L +N E AL F ++ + +
Sbjct: 232 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 290
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------CT 131
+ T + +L+A A+ G + G + + + + + ++D+ C+ CT
Sbjct: 291 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACT 350
Query: 132 VKFT---------WTTMIVGLAISGNGDKA 152
+ T W T++VG S N DK+
Sbjct: 351 LVETMPISPNPVIWRTLLVGCKKSKNLDKS 380
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 15/179 (8%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S+ AI+ GY VD+AR FD+M RD + + +M+ GY+ + REAL LF ++ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------T 131
+ D FT+V++LTA A+LGAL+ G + I++ V+ DI+ G AL+DMY KC T
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 132 VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ F TWT MI GLA +G G AL+ F QM +P+ V+Y+ VL+A +H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD +++T ++SG + + Q P RD + WT++I Y R NR REA+
Sbjct: 165 FDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAV 224
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ + + I DE T++++L+A A L LELG + +++ + ALIDMY
Sbjct: 225 GCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMY 284
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC +W +I G G+ D A +F +M
Sbjct: 285 AKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ TA++ Y+ +VD A F +M +RD WT MI G + AL F +++
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ + +++LTA ++ L G + Y D+ ++ +I + I+ Y
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEG---RLYFDEMRILYNI---HPQIEHY------- 512
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
MI L SG D+A+D+ M I+P+ V + +LSA R H
Sbjct: 513 --GCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSACRVH 554
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 111/184 (60%), Gaps = 15/184 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++ D++ TA+VS V AR+ FD+M +D + W MI GY++ + REA
Sbjct: 168 VFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREA 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+LF +Q + +E ++VS+L+A ++LGAL+ G W YI++NK++ + G ALIDM
Sbjct: 228 LSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDM 287
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +TW++ I GLA++G G+K L++FS M + S++P+E+ +
Sbjct: 288 YAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITF 347
Query: 172 VGVL 175
V VL
Sbjct: 348 VSVL 351
Score = 35.8 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A + F M E++ W++ I G + L LF ++ ++
Sbjct: 282 TALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQ 341
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T VS+L + +G +E G
Sbjct: 342 PNEITFVSVLRGCSVVGLVEEG 363
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 15/179 (8%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S+ AI+ GY VD+AR FD+M RD + + +M+ GY+ + REAL LF ++ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------T 131
+ D FT+V++LTA A+LGAL+ G + I++ V+ DI+ G AL+DMY KC T
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 132 VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ F TWT MI GLA +G G AL+ F QM +P+ V+Y+ VL+A +H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD +++T ++SG + + Q P RD + WT++I Y R NR REA+
Sbjct: 165 FDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAV 224
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ + + I DE T++++L+A A L LELG + +++ + ALIDMY
Sbjct: 225 GCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMY 284
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC +W +I G G+ D A +F +M
Sbjct: 285 AKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ TA++ Y+ +VD A F +M +RD WT MI G + AL F +++
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ + +++LTA ++ L G + Y D+ ++ +I + I+ Y
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEG---RLYFDEMRILYNI---HPQIEHY------- 512
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
MI L SG D+A+D+ M I+P+ V + +LSA R H
Sbjct: 513 --GCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSACRVH 554
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M NKDV+S+ +++GY + V + F++MPER+ W +I GY R F E
Sbjct: 169 ELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSE 228
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L+ F+ + ++ ++ T+V++L+A A LGAL+LG+W+ Y + + K +++ NAL+
Sbjct: 229 VLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALM 288
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V +W T+I GLA+ G+G AL++FS M A PD +
Sbjct: 289 DMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGI 348
Query: 170 AYVGVLSARTH 180
++G+L A TH
Sbjct: 349 TFIGILCACTH 359
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FDQ+PE + +W M GY + ++ + LF++++ ++M + FT IL +
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+ AL+ GE + ++ K+ + + F LIDMY
Sbjct: 64 INALKEGEEVHCFVIKSGFRANPFVATTLIDMY 96
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 106/176 (60%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++V+ Y E++ IAR+ FD++ ER+ V W+ M+ GY R+ EAL +F+E+Q I
Sbjct: 131 SSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIE 190
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
DE ++V +L+A A +GAL++G+W+ YI K + D+ ALI+MY KC
Sbjct: 191 PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREI 250
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W++MIVGLAI G + AL++FS+M A KP+ V ++G+LSA H
Sbjct: 251 FDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAH 306
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMG-DEFTIVSILT 90
D AR+ F Q+P + ++I G L +E + LF+++ + FT+ +L
Sbjct: 41 DYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLK 100
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---TVK------------FT 135
A + + ALE G+ I I ++ + + ++L++ Y KC T+
Sbjct: 101 ACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVC 160
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ M+ G A G ++AL MF +M I+PDEV+ VGVLSA
Sbjct: 161 WSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSA 202
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 56/110 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+++ Y ++ AR+ FD+M +D W++MI G +AL +F ++ +
Sbjct: 232 TALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAK 291
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ T + IL+A A+ G + G+ + + + ++ + ++D+ C+
Sbjct: 292 PNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCR 341
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y EQV +AR FD M P++ V W+ MI+GY RV EAL LF+E+Q +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGV 224
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+V +++A A GAL+LG+W+ YID+ + D+ ALIDMY KC +
Sbjct: 225 EPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSA H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ AR FD M E+D W+ MI G+ +AL LF + +
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 326
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A A+ G ++ G + + +K + +ID+ C+ + +
Sbjct: 327 PNNVTFIGVLSACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMIDLLCRSGLLDDAYSF 386
Query: 140 IVGLAISGN 148
++ + IS N
Sbjct: 387 VIDMPISPN 395
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV- 132
+ FT+ L A A + A G + + ++ + L+++Y KC TV
Sbjct: 125 NTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVF 184
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G + G +AL +F +M ++PDEV VGV+SA
Sbjct: 185 DGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISA 237
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M DV+S++ +V ++ ++++ARQ F +MPERD V WT M+ GY + R RE
Sbjct: 342 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 401
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E++ + DE +VS+++A +LG LE G + YID+N + NALID
Sbjct: 402 ALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALID 461
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +MI A GN + A +F+ ML + I+PD V
Sbjct: 462 MYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVT 521
Query: 171 YVGVLSARTHN 181
++ +L+A TH
Sbjct: 522 FLALLTAYTHK 532
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ K V+S+T ++ GY +D+A + F MPE++ V W MI ++ N EA
Sbjct: 312 LFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEA 371
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+Q SN+ D+ T++ L+A + LGAL+ G W YI K+ + D+ G ALIDM
Sbjct: 372 LELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDM 431
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TWT +I GLA+ GN + A+ FS+M+ + + PDE+ +
Sbjct: 432 YAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITF 491
Query: 172 VGVLSARTH 180
+GVL+A H
Sbjct: 492 LGVLTACCH 500
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 52/227 (22%)
Query: 1 MGFTLEIFGTMK----NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
MGF EI G + +KD+ Y I+ ++ + +A + FD+ RD V W ++I+G
Sbjct: 172 MGF--EILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y+R + REA+ ++Q++ T ++ DE T++ +++A A L +L+LG I YI+++ +
Sbjct: 230 YVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLK 289
Query: 117 IFAGNALIDMYCKC------TVKF---------TWTTMIVGLAISGNGD----------- 150
I NAL+DMY KC V F +WTTMIVG A +G D
Sbjct: 290 ISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPE 349
Query: 151 --------------------KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL++F +M +++KPD+V + LSA
Sbjct: 350 KNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA++ Y + A Q F++MP R+ + WT +I G +A+ F ++
Sbjct: 421 DVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMI 480
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114
S +M DE T + +LTA + G +E G + Y D+ K +
Sbjct: 481 DSGLMPDEITFLGVLTACCHGGLVEEG---RKYFDQMKSR 517
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G L+ F + + +IS+ AI +D + + + + W +I G +
Sbjct: 80 GLILDGFASSR---LISFCAISES----RNLDYCIKILNNLQNPNVFSWNAVIRGCVESE 132
Query: 62 RFREALTLFQEIQT-SNIMGDEFTIVSILTARANL-----GALELGEWIKTYIDKNKVKN 115
++ L L++ + T + D +T + ANL G LG+ +K DK
Sbjct: 133 NPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDK----- 187
Query: 116 DIFAGNALIDMYCK--------------CTVKF-TWTTMIVGLAISGNGDKALDMFSQML 160
D++ N +I M C +W ++I G +A+ ++ QM+
Sbjct: 188 DMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMI 247
Query: 161 RASIKPDEVAYVGVLSA 177
+KPDEV +GV+SA
Sbjct: 248 TEHVKPDEVTMIGVVSA 264
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 114/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IFG M +DV+S+T++V+GY V+ AR+ FD+MP R+ W+ MI+GY + N F +A
Sbjct: 174 IFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKA 233
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+ ++ ++ +E +VS++++ A+LGALE GE Y+ K+ + ++ G AL+DM
Sbjct: 234 IDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDM 293
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ +C T +W+++I GLA+ G+ KA+ FSQM+ P +V +
Sbjct: 294 FWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTF 353
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 354 TAVLSACSH 362
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + ++ +I + +A + ++ S I D T ++ A + + +
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 127
+GE + I + +ND++ N+L+ M Y
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
CKC + FTW+ MI G A + +KA+D+F M R + +E V
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253
Query: 173 GVLSARTH 180
V+S+ H
Sbjct: 254 SVISSCAH 261
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TA+V + ++ A F+ +PE D + W+++I G +A+ F ++
Sbjct: 283 NLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + + T ++L+A ++ G +E G
Sbjct: 343 SLGFIPRDVTFTAVLSACSHGGLVEKG 369
>gi|242054205|ref|XP_002456248.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
gi|241928223|gb|EES01368.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
Length = 402
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 15/177 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV+ TA+V VD AR FD MP+RD+V W MI GY+ V R REAL LF E+
Sbjct: 178 PDVVCVTAMVGALAAGGDVDAARGLFDGMPQRDHVAWNAMIAGYVHVGRSREALRLFDEM 237
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
++ E T+VS+LTA A +GAL+ G+W+ Y+ ++ + G AL+DMY KC
Sbjct: 238 LSAGTTVGEATLVSVLTACAQIGALDRGKWVHWYVRSRGMQMSVKLGTALVDMYSKCGAV 297
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+TWT+ + GLA++G G + L +F +M+ A I+P+ V++V VL
Sbjct: 298 VTAMEVFESMAERNVYTWTSAVSGLAMNGMGVECLQLFKRMVSAGIQPNGVSFVAVL 354
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M NK V+S+ ++ +G+I V+ A + F+Q+PER+ V W TMI G ++ + F +A
Sbjct: 390 VFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDA 449
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+E+Q I D T++ I +A LGA EL +W+ TYI+KN + D+ AL+DM
Sbjct: 450 IELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDM 509
Query: 127 YCKCT---------VKFT------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ +C K T WT I +A+ GNG+ A +F+QML +KPD V +
Sbjct: 510 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 569
Query: 172 VGVLSARTH 180
V VL+A +H
Sbjct: 570 VQVLTACSH 578
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV ++ Y +D + F+ M ER+ V WT++I GY R +R +EA++LF E+
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ I T+V +++A A L L++GE + YI + +K + NAL+DMY KC
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAI 283
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ T++ A G +AL + +ML+ +PD V + +SA
Sbjct: 284 DAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y+ +D A++ FD+ +R+ VL+ T++ Y R REAL + E+
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D T++S ++A A L L G+ Y+ +N ++ GN +IDMY KC
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391
Query: 131 --------------TVKFT----------------------WTTMIVGLAISGNGDKALD 154
T F W TMI GL + A++
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +M IK D V +G+ SA
Sbjct: 452 LFREMQGEGIKADRVTMMGIASA 474
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 30 EQVDIARQCFDQMPE---RDYVLW--TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
E +D AR+ F+ E D L+ ++I GY REA+ L+ + + + +T
Sbjct: 74 ESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYT 133
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK----------- 133
+L+ + A G + + K ++ D+F N LI Y +C
Sbjct: 134 FPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193
Query: 134 ----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT++I G A +A+ +F +M+ A I+P V V V+SA
Sbjct: 194 ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V + A Q F++M ERD WT I A LF ++ +
Sbjct: 504 TALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D V +LTA ++ G +E G I + ++ + + I ++D+
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDL------------- 610
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G +A D+ M ++P++V + +L+A R H
Sbjct: 611 ---LGRAGLLREAFDLIKSM---PMEPNDVVWGSLLAACRVH 646
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M DV+S++ +V ++ ++++ARQ F +MPERD V WT M+ GY + R RE
Sbjct: 155 QVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSRE 214
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E++ + DE +VS+++A +LG LE G + YID+N + NALID
Sbjct: 215 ALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALID 274
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +MI A GN + A +F+ ML + I+PD V
Sbjct: 275 MYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVT 334
Query: 171 YVGVLSARTHN 181
++ +L+A TH
Sbjct: 335 FLALLTAYTHK 345
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G IF DV+++ ++ G ++D +R+ FD+M R+ V W +MI GY+R
Sbjct: 148 LGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRK 207
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RF EA+ LF +Q I EFT+VS+L A A LGAL GEWI YI KN +
Sbjct: 208 GRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVI 267
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
A+IDMY KC W ++I+GLA+SG G++A+ +FS++ +++K
Sbjct: 268 TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLK 327
Query: 166 PDEVAYVGVLSARTH 180
PD V+++GVL+A H
Sbjct: 328 PDHVSFIGVLTACNH 342
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ V+++ +G IN A F Q+ + +W T+I G+ + + A++L
Sbjct: 28 TIAASRVLAFCTSPAGDIN-----YAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISL 82
Query: 70 FQEIQ--TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F ++ + T S+ A A LG G + + K ++ND F N +++MY
Sbjct: 83 FIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMY 142
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML 160
C TW TMI+GLA G DK+ +F +ML
Sbjct: 143 VNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKML 190
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
I TAI+ Y +D A Q F P++ W ++I G R EA+ LF ++++S
Sbjct: 265 IVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESS 324
Query: 77 NIMGDEFTIVSILTARANLGALE 99
N+ D + + +LTA + G ++
Sbjct: 325 NLKPDHVSFIGVLTACNHAGMVD 347
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 17/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K VI++T ++ GY N +D AR+ FD MPER+ V W TMI GY + + +EA
Sbjct: 198 LFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEA 257
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ LFQE+Q T+++ D+ TI+S+L A ++ GAL LGEW ++ + + + A++D
Sbjct: 258 IRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILD 317
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W MI G A++GN ALD+F M + KPDE+
Sbjct: 318 MYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEIT 376
Query: 171 YVGVLSARTH 180
+ V+SA H
Sbjct: 377 MLAVISACNH 386
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
VIS +A+ GY AR+ FDQ P R D L +MI YL + ++ +++++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLR 69
Query: 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---- 129
+ D FT ++ + + G + + I ++ D++ ++DMY K
Sbjct: 70 KETCLAPDNFTFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKM 129
Query: 130 -CT----------VKFTWTTMIVGLAISGNGDKALDMFSQM 159
C + +WT +I G G D A +F QM
Sbjct: 130 GCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQM 170
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 111/190 (58%), Gaps = 17/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K VI++T ++ GY N + +D AR+ FD MPER+ V W TMI GY + + +E
Sbjct: 198 LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEG 257
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+TLFQE+Q T+++ D+ TI+S+L A ++ GAL LGEW ++ + K+ + A++D
Sbjct: 258 ITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILD 317
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W MI G A++GN ALD+F M+ KPDE+
Sbjct: 318 MYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEIT 376
Query: 171 YVGVLSARTH 180
+ V++A H
Sbjct: 377 MLAVITACNH 386
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLR 59
MG F M ++ +S+TA++SGYI ++D+A + FDQMP +D V++ M+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
A LF E+ ++ T +++ N+ DI A
Sbjct: 189 SGDMTSARRLFDEMTHKTVI----TWTTMIHGYCNI-------------------KDIDA 225
Query: 120 GNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
L D + + +W TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 226 ARKLFDAMPERNL-VSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPA 283
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
VIS +A+ GY AR+ FDQ P+R D L +MI YL ++ ++ L+++++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---- 129
D FT ++ + + + G + + I + D++ ++DMY K
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 130 -CT----------VKFTWTTMIVGLAISGNGDKALDMFSQM 159
C + +WT +I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +D +S+ +++ GY ++++A + F+ MPER+ + WT+MI G + + +EA
Sbjct: 175 LFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEA 234
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +QT+ I D +VS L A A+LG L+ G+WI YI K++++ D G LIDM
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Query: 127 YCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC ++ WT MI G AI G G +AL+ F +M A ++P+++ +
Sbjct: 295 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTF 354
Query: 172 VGVLSARTH 180
G+L+A +H
Sbjct: 355 TGILTACSH 363
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 46/196 (23%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N + AR FD++ + +W TMI GY EAL L+ + ++ + +T
Sbjct: 64 NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPF 123
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------- 130
+L A +++ ALE + I +I K ++I+ N+L+++Y K
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183
Query: 131 TVKF-----------------------------TWTTMIVGLAISGNGDKALDMFSQMLR 161
TV + +WT+MI G +G +AL++F +M
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243
Query: 162 ASIKPDEVAYVGVLSA 177
A IK D VA V L A
Sbjct: 244 AGIKLDNVALVSTLQA 259
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I ++ Y ++ A + F +M E+ +WT MI GY R REAL F ++Q
Sbjct: 284 DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQ 343
Query: 75 TSNIMGDEFTIVSILTARANLG 96
T+ + ++ T ILTA ++ G
Sbjct: 344 TAGVEPNQMTFTGILTACSHAG 365
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S+T ++ G ++ Q+D A F+QMP R+ V WT MI Y++ R E
Sbjct: 174 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDE 233
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+ +Q ++ +EFTIV++L A LG+L +G W+ Y KN D + G ALID
Sbjct: 234 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALID 293
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEV 169
MY KC TW +MI L + G G++AL +F AS++PD +
Sbjct: 294 MYSKCGSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAI 353
Query: 170 AYVGVLSA 177
+VGVLSA
Sbjct: 354 TFVGVLSA 361
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+ A F+Q+ W MI ++ REAL LF + + D+FT ++
Sbjct: 67 ETQYASLVFNQLQSPSTFTWNLMIRSLSLNHKPREALLLFILMLSHQPQFDKFTFPFVIK 126
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FT 135
A +L LG + K ND+F N L+D+Y KC +
Sbjct: 127 ACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGRKVFDKMPGRSIVS 186
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
WTTM+ GL + D A +F+QM ++ V++ +++A N
Sbjct: 187 WTTMLYGLVSNSQLDSAEIVFNQMPTRNV----VSWTAMITAYVKN 228
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 114/187 (60%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F MK +++++ A+++ Y + + AR+ FDQ+P++D + W++MI GY + N F +
Sbjct: 244 KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 303
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+++Q + + D I S++++ A+LGAL+LG+W+ Y+ +N +K D N+LID
Sbjct: 304 ALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLID 363
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W ++I+GLA +G ++L++F ML +P+ V
Sbjct: 364 MYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVT 423
Query: 171 YVGVLSA 177
++GVL A
Sbjct: 424 FLGVLIA 430
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y + AR FD+M +D V W ++I GY + NRF++ L LF+ +Q
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ D+ T++ +++A LG + +++ YI+ ++ D++ GN L+D +
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240
Query: 128 --------CKCTVKFTWTTMIVGLA--------------------------ISG-----N 148
K T MI A ISG +
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
AL++F QM RA +KPD + V+S+ H
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 332
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FDQ+ LW +I G + + +A+ +++ Q ++ D T IL A A
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTM 139
+ AL GE + +I K + +DIF N+LI +Y C VK +W ++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
I G + L +F M +K D+V + V+SA T
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 199
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I +++ Y+ A Q F +M E+D + W ++I G +E+L LFQ +
Sbjct: 354 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 413
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
T + T + +L A AN +E G +D + +++ + Y C V
Sbjct: 414 TEGFRPNGVTFLGVLIACANAKLVEEG------LDHFESMKRLYSLEPQMKHY-GCVVDL 466
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL-SARTH 180
L +G +KAL ++M I PD V + +L S TH
Sbjct: 467 --------LGRAGQLEKALRFITEM---PIDPDPVVWRILLGSCNTH 502
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +D +S+ +++ GY ++++A + F+ MPER+ + WT+MI G + + +EA
Sbjct: 175 LFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEA 234
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +QT+ I D +VS L A A+LG L+ G+WI YI K++++ D G LIDM
Sbjct: 235 LNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDM 294
Query: 127 YCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC ++ WT MI G AI G G +AL+ F +M A ++P+++ +
Sbjct: 295 YAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTF 354
Query: 172 VGVLSARTH 180
G+L+A +H
Sbjct: 355 TGILTACSH 363
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N + AR FD++ + +W TMI GY EAL L+ + ++ + +T
Sbjct: 64 NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPF 123
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------- 130
+L A +++ A E + I +I K ++I+ N+L+++Y K
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183
Query: 131 TVKF-----------------------------TWTTMIVGLAISGNGDKALDMFSQMLR 161
TV + +WT+MI G +G +AL++F +M
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243
Query: 162 ASIKPDEVAYVGVLSA 177
A IK D VA V L A
Sbjct: 244 AGIKLDNVALVSTLQA 259
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I ++ Y ++ A + F +M E+ +WT MI GY R REAL F ++Q
Sbjct: 284 DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQ 343
Query: 75 TSNIMGDEFTIVSILTARANLG 96
T+ + ++ T ILTA ++ G
Sbjct: 344 TAGVEPNQMTFTGILTACSHAG 365
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F +M++K+V S+ +VSG ++ AR+ F++M E++ + W+ MIDGY++ ++E
Sbjct: 217 ELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKE 276
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F +Q I +F + S+L A ANLGAL+ G WI Y++ N D G AL+D
Sbjct: 277 ALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVD 336
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC FTW MI GL + G + A+++F +M + +P+ +
Sbjct: 337 MYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGIT 396
Query: 171 YVGVLSARTHN 181
+GVLSA H+
Sbjct: 397 LLGVLSACAHS 407
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A + Y + +V+ AR+ + D + + MIDGYL+ A LF ++
Sbjct: 164 DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME 223
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
N+ G +VS A G +E + ++ K KN+I
Sbjct: 224 DKNV-GSWNVMVS---GMAKCGMIEEA---RELFNEMKEKNEI----------------- 259
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ MI G G +AL++F+ M R I+P + VL+A
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAA 302
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+V Y ++D+A F++M +++ W MI G R +A+ LF ++Q
Sbjct: 327 DAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQ 386
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ T++ +L+A A+ G ++ G
Sbjct: 387 KQKFRPNGITLLGVLSACAHSGMVDEG 413
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 112/187 (59%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F MK+K+ ++ A++ Y + A++ FDQ+P +D + W++MI Y + + F +
Sbjct: 567 KVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSD 626
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF+++Q + + D I S+L+A A+LGAL+LG+WI Y+ +N +K D N+LID
Sbjct: 627 SLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLID 686
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC +W ++I+GLA +G D+AL++F ML +P+EV
Sbjct: 687 MFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVT 746
Query: 171 YVGVLSA 177
++GVL A
Sbjct: 747 FLGVLIA 753
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 110/186 (59%), Gaps = 16/186 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+V+S+ +++G+ +++ AR FDQMP R+ V WT +IDGY R + EA+ LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+ + I E T+++++ A +NLG + +GE + Y K + +D GN+LID+Y K
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 131 -----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
++K +WT++I G A+ G +AL++F++M RA I+P+ + ++ V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 175 LSARTH 180
++A +H
Sbjct: 181 INACSH 186
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 55/226 (24%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF L+IF + +++ Y + AR FD+M +D V W ++I GY +
Sbjct: 439 LGFLLDIFVS---------NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQR 489
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NRF+E L LF+ +Q + D+ T+V +++A +LG + + + YI++N ++ D++ G
Sbjct: 490 NRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLG 549
Query: 121 NALIDMYC-----------------KCTVKF----------------------------- 134
N LID YC K TV
Sbjct: 550 NTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLI 609
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W++MI + + + +L++F QM RA +KPD V VLSA H
Sbjct: 610 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAH 655
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 30 EQVDI--ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
+Q D+ A + F+Q+ LW T++ G + + ++A+ +++ Q + D T
Sbjct: 356 QQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPF 415
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK- 133
+L A A A + GE + +++ K DIF N+LI +Y C VK
Sbjct: 416 VLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKD 475
Query: 134 -FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W ++I G + + L +F M ++ D+V V V+SA TH
Sbjct: 476 VVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 37 QCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95
+ FD+M +R + V WT++I G+ EAL LF E++ + I + T +S++ A ++
Sbjct: 128 KVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHG 187
Query: 96 GALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
G +E G + K+ + + + +I +IDM + +I GL + N
Sbjct: 188 GLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVN 241
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 116/192 (60%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M F +F +D +S+TA+++GY+++ +D AR+ FD++P +D V W MI GY++
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RF EA+ F E+Q +N++ ++ T+V +L+A + + ELG+WI +++ N +++
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301
Query: 121 NALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMYCKC +W TMI G + ++AL +F MLR+++K
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361
Query: 166 PDEVAYVGVLSA 177
P++V ++G+L A
Sbjct: 362 PNDVTFLGILHA 373
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 19/178 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y + DIAR+ FD + E+D + W TMI GY ++ + EAL LF+ + SN+
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG--NALIDMYCKCTV----- 132
++ T + IL A A LGAL+LG+W+ YIDKN ++N A +LIDMY KC
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKN-LRNSSNASLWTSLIDMYAKCGCIEAAE 420
Query: 133 ----------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSART 179
+W M+ G A+ G+ ++AL +FS+M+ + +PD++ +VGVLSA T
Sbjct: 421 RVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACT 478
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+T+++ Y ++ A + F M R+ W M+ G+ AL LF E+ +
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGL 462
Query: 79 M-GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
D+ T V +L+A G ++LG ++ ++ I + + +ID+
Sbjct: 463 FRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDL 512
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 116/191 (60%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D+ S+T +++ Y N V+ AR+ FD+MPER V ++ M+ Y+R NRFREA
Sbjct: 144 VFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREA 203
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALID 125
L LF+E+ + I + ++S+L A ANLGAL++G W+ +++ +K D ALID
Sbjct: 204 LELFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALID 263
Query: 126 MYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC +++ WT M+ GLA+ G G++ ++ F +M+ + IKPDEV
Sbjct: 264 MFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVT 323
Query: 171 YVGVLSARTHN 181
+V +LS +H+
Sbjct: 324 FVALLSGCSHS 334
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 114/187 (60%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F MK +++++ A+++ Y + + AR+ FDQ+P++D + W++MI GY + N F +
Sbjct: 709 KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 768
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+++Q + + D I S++++ A+LGAL+LG+W+ Y+ +N +K D N+LID
Sbjct: 769 ALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLID 828
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W ++I+GLA +G ++L++F ML +P+ V
Sbjct: 829 MYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVT 888
Query: 171 YVGVLSA 177
++GVL A
Sbjct: 889 FLGVLIA 895
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M K+ +S+ +++G+ +V+ AR F++MP R+ V W+ MIDGY R R EA+
Sbjct: 147 FEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAV 206
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+ + I E T+++++ A +N+G + +GE + Y +K + D+ GN+LID+Y
Sbjct: 207 ALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLY 266
Query: 128 CKC-TVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
K +++ +WT++I G A+ G KA+++F+ M RA I+P+ + +
Sbjct: 267 AKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITF 326
Query: 172 VGVLSARTH 180
+ VL A +H
Sbjct: 327 LSVLHACSH 335
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y + AR FD+M +D V W ++I GY + NRF++ L LF+ +Q
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ D+ T++ +++A LG + +++ YI+ ++ D++ GN L+D +
Sbjct: 646 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705
Query: 128 --------CKCTVKFTWTTMIVGLA--------------------------ISG-----N 148
K T MI A ISG +
Sbjct: 706 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
AL++F QM RA +KPD + V+S+ H
Sbjct: 766 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 797
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FDQ+ LW +I G + + +A+ +++ Q ++ D T IL A A
Sbjct: 505 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTM 139
+ AL GE + +I K + +DIF N+LI +Y C VK +W ++
Sbjct: 565 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
I G + L +F M +K D+V + V+SA T
Sbjct: 625 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 664
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I +++ Y+ A Q F +M E+D + W ++I G +E+L LFQ +
Sbjct: 819 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 878
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
T + T + +L A AN +E G +D + +++ + Y C V
Sbjct: 879 TEGFRPNGVTFLGVLIACANAKLVEEG------LDHFESMKRLYSLEPQMKHY-GCVVDL 931
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL-SARTH 180
L +G +KAL ++M I PD V + +L S TH
Sbjct: 932 --------LGRAGQLEKALRFITEM---PIDPDPVVWRILLGSCNTH 967
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 39 FDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
FD+M +R + V WT++I G+ +A+ LF +++ + I + T +S+L A ++ G
Sbjct: 279 FDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGL 338
Query: 98 LELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+E G + K+ I + + D+ +IDM
Sbjct: 339 VEQGVAFFKSMIYEYNINPDVKHFGCIIDM 368
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/195 (35%), Positives = 114/195 (58%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F +DV+S+ A++ GY+ ++ AR FD+M RD + W TMI+GY
Sbjct: 217 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL LF +++ + E T+VS+L+A A+LGAL+ G + TYI+ N+++ + G
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 336
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC T F W T+I G+AI GN +A +F +M A ++
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 166 PDEVAYVGVLSARTH 180
P+++ +V +LSA +H
Sbjct: 397 PNDITFVAILSACSH 411
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A Q F+ M +D + W T+I G +EA LF+E++ + +
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 80 GDEFTIVSILTARANLGALELGE 102
++ T V+IL+A ++ G ++ G+
Sbjct: 397 PNDITFVAILSACSHAGMVDEGQ 419
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + DV+SY A++ G + Q+ AR+ FD+MP RD + W TMI GY + +
Sbjct: 165 KLFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQ 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF E+ + D +VS+L+A A LG LE G + YI +N+++ D + L+D
Sbjct: 225 AIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVD 284
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC T + FTW M+VG AI G G L+ FS+M+ +KPD V
Sbjct: 285 LYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVT 344
Query: 171 YVGVLSARTH 180
+GVL +H
Sbjct: 345 LLGVLVGCSH 354
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 15/184 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +++ D++ T +VS + AR FD MP+RD+V W MI GY + + REA
Sbjct: 167 VFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREA 226
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+ +Q + +E +++S++TA +LGAL+ G+W YI+KNK++ + G AL+DM
Sbjct: 227 LNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDM 286
Query: 127 YCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K +TW+T I GLA++G G K L++FS M I P+E+ +
Sbjct: 287 YFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITF 346
Query: 172 VGVL 175
+ VL
Sbjct: 347 ISVL 350
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 26/162 (16%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y VD A + F +M E++ W+T I G ++ L LF ++ I
Sbjct: 281 TALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIA 340
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG----NALIDMYCKCTVKFT 135
+E T +S+L + +G ++ G +++ D K + I ++D+Y +
Sbjct: 341 PNEITFISVLKGCSVVGFVDEG---RSHFDSMKRDHGIEPRLEHYGCMVDLYGR------ 391
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G ++AL+ + M +KP A+ +L+A
Sbjct: 392 ----------AGRLEEALNFINTM---PLKPHAGAWGALLNA 420
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 119/191 (62%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M N+DV+S+ ++++GY+ ++++A++ F+ M ++D V WT+MI Y++ +A
Sbjct: 166 VFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKA 225
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALID 125
L LF+E+ + + D IVS+L+A A+LG +E G+W+ Y+ NK++ + F G+ALID
Sbjct: 226 LDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALID 285
Query: 126 MYCKC-----------TVKF-----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC ++ W +MI GLAI G +ALD+F +M R I+P+E+
Sbjct: 286 MYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEI 345
Query: 170 AYVGVLSARTH 180
++G+LS +H
Sbjct: 346 TFLGLLSTCSH 356
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 56/198 (28%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSIL 89
+D A F ++ + ++ +I G+ + E+L L+ + + + G EF+I S+L
Sbjct: 57 LDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVL 116
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF--------------- 134
A L A + G + + K + D F GN+++ MY + F
Sbjct: 117 KACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMY----IDFGEIELARRVFDRMPN 172
Query: 135 ----TWTTMIVGLAISGNGD-------------------------------KALDMFSQM 159
+W +MI G +G + KALD+F +M
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM 232
Query: 160 LRASIKPDEVAYVGVLSA 177
L ++PD A V VLSA
Sbjct: 233 LSLGLRPDGPAIVSVLSA 250
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 24 SGYINREQVDIARQC---------FDQMPERDYV-LWTTMIDGYLRVNRFREALTLFQEI 73
SG+I +D+ +C F + R + W +MI G REAL +F E+
Sbjct: 276 SGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEM 335
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMY 127
+ +I +E T + +L+ ++ G +E G+ + ++ +K K+ I +ID++
Sbjct: 336 ERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLF 390
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 116/195 (59%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F + K+ +S+ +++G++ ++++A Q FD+MP RD + WT +I+G L+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL F ++Q S + D +I+++L A A+LGAL LG W+ ++ + K++I
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265
Query: 121 NALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY +C ++F +W ++IVG A++G D++L+ F M + K
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFK 325
Query: 166 PDEVAYVGVLSARTH 180
PD V+Y G L+A +H
Sbjct: 326 PDGVSYTGALTACSH 340
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 49/179 (27%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE--LGEWIK 105
VLWT+ + Y R + EA F ++ + + + T +++L+A A+ + +
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 106 TYIDKNKVK-NDIFAGNALIDMYCKCT-------------VK------------------ 133
Y K + + G ALIDMY KC VK
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT +I GL G ++AL+ F QM R+ + D V+ + VL+A
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILT 90
++ ARQ F +M +R V W ++I G+ VN F E+L F +Q D + LT
Sbjct: 278 IEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFXAMQKEGFKPDGVSYTGALT 336
Query: 91 ARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG 149
A ++ G + G E +K+ I ++D+Y + +G
Sbjct: 337 ACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGR----------------AGRL 380
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ AL+M +M +KP+EV +L+A RTH
Sbjct: 381 EDALNMIEEM---PMKPNEVVLGSLLAACRTH 409
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 108/182 (59%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++++ Y Q++ AR+ FD++P R+ V WT+MI GY + + F+EA+ LF+E+Q
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
D TI +L+A + GAL G WI Y ++N ++ D+ A NALI MY KC
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 384
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAR 178
F+W+ +I GLA++G DKAL +FSQM + + I+P+E+ ++GVL A
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444
Query: 179 TH 180
H
Sbjct: 445 NH 446
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQE 72
DV A++S + + V+ AR FD +P RD V W +MI GYL+ +R+ AL +F E
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220
Query: 73 I-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ ++ DE T+VS L+ LG L+LG+ I + D+F G++LIDMY KC
Sbjct: 221 LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCG 280
Query: 132 V---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
WT+MI G A S +A+++F +M D VLS
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340
Query: 177 ARTH 180
A H
Sbjct: 341 ACGH 344
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
+R F Q+ + + W M Y R + E + L+ + + + D ++ +L A A
Sbjct: 80 SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-----------------KFTWT 137
L L G I + K V D+F NALI + C +W
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199
Query: 138 TMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLS 176
+MI G S + AL +F ++L S+ PDEV V LS
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALS 239
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 15/187 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
+M ++ IS+T ++SGY VD A + F MPER+ W MI Y++ NRF E+ L
Sbjct: 204 SMPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFAL 263
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F ++ ++ D+F ++L+A LGALE G+WI YI+K ++ D A+IDMYCK
Sbjct: 264 FDRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCK 323
Query: 130 CTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C +W MI GLA+ G G+ A+++F +M + + PD + +V +
Sbjct: 324 CGSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNL 383
Query: 175 LSARTHN 181
LSA H+
Sbjct: 384 LSACAHS 390
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
G +K V++ S N + A + FD +P D + T+I YL+ ++
Sbjct: 70 LGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAYLQHLSPTNSI 129
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ + ++ ++FT S++ A ++LG+ I ++ K + + N LI MY
Sbjct: 130 LLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNNLIHMY 189
Query: 128 --------CKCTVK-------FTWTTMIVGLAISGNGDKALDMFSQM 159
+C + +WTT+I G + G D+A +F M
Sbjct: 190 ARFQAFEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEAFRVFQSM 236
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E++ + +K ++ TA++SGY V AR FD+M E+D V W+ MI GY
Sbjct: 268 MHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL LF E+Q I+ D+ T++S+++A AN+GAL +WI TY DKN +
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPIN 387
Query: 121 NALIDMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC VK +W++MI A+ G+ D A+ +F +M +I+
Sbjct: 388 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIE 447
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++GVL A +H
Sbjct: 448 PNGVTFIGVLYACSH 462
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 46/204 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+++ Y ++ AR FD+M RD V W MIDGY + + L L++E++TS
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D + ++L+A A+ G L G+ I +I N + +L++MY C
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274
Query: 131 --------------------------TVKFT-----------WTTMIVGLAISGNGDKAL 153
+F W+ MI G A S +AL
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEAL 334
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+F++M R I PD++ + V+SA
Sbjct: 335 QLFNEMQRRRIVPDQITMLSVISA 358
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ F+ MP ++ + W++MI+ + A+ LF ++ NI + T + +L A ++
Sbjct: 403 AREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSH 462
Query: 95 LGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVKFTWTTMIVG 142
G +E G+ + + I+++++ ++D+YC+ T+ F +I G
Sbjct: 463 AGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWG 522
Query: 143 LAISG---NGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+S +G+ L F+ ++PD + VLS
Sbjct: 523 SLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLS 559
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A F +P ++ + R L+L+ ++ + D F+ +L A
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124
Query: 92 RANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKC----TVKF-----------T 135
+ L AL LG I K D F +ALI MY C +F T
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W MI G + + + D L ++ +M + +PD + VLSA H
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH 229
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 15/183 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + DV+ TA+V+ VD AR FD MP+RD+V W+ MI GY+ V R REAL
Sbjct: 1377 FAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREAL 1436
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF E+ ++ E T+VS+LTA A +G L+ G+W+ Y+ ++ I G AL+DMY
Sbjct: 1437 MLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 1496
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +TWT+ + GLA++G G + L +F +M A I+P+ V++V
Sbjct: 1497 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 1556
Query: 173 GVL 175
VL
Sbjct: 1557 AVL 1559
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V A + F+ M ER+ WT+ + G E L LF+ ++ + I
Sbjct: 1490 TALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQ 1549
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ + V++L + G ++ G +DK V ++D+Y +
Sbjct: 1550 PNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGR---------- 1599
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D A+ + M ++P E + +L+A R HN
Sbjct: 1600 ------AGRLDDAISFINDM---PMEPHEGVWGALLNASRIHN 1633
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 15/183 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + DV+ TA+V+ VD AR FD MP+RD+V W+ MI GY+ V R REAL
Sbjct: 172 FAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREAL 231
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF E+ ++ E T+VS+LTA A +G L+ G+W+ Y+ ++ I G AL+DMY
Sbjct: 232 MLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMY 291
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +TWT+ + GLA++G G + L +F +M A I+P+ V++V
Sbjct: 292 SKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFV 351
Query: 173 GVL 175
VL
Sbjct: 352 AVL 354
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V A + F+ M ER+ WT+ + G E L LF+ ++ + I
Sbjct: 285 TALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQ 344
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ + V++L + G ++ G +DK V ++D+Y +
Sbjct: 345 PNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLYGR---------- 394
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D A+ + M ++P E + +L+A R HN
Sbjct: 395 ------AGRLDDAISFINDM---PMEPHEGVWGALLNASRIHN 428
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + K+V+S+T+++S Y +++ARQ FDQMP ++ V W +MI YLR ++REA
Sbjct: 318 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 377
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +++ S ++ DE T+VSIL A + LG L +G+ I YI NK + N+LIDM
Sbjct: 378 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 437
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T W +I LA+ G G +A+ +F +M PDE+
Sbjct: 438 YAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITL 497
Query: 172 VGVLSARTHN 181
G+LSA +H+
Sbjct: 498 TGLLSACSHS 507
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 40/173 (23%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMI----------------DGYLRVNRFR 64
A+++ Y+ + AR+ FD + ++ V W +MI D Y +
Sbjct: 254 ALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLH 313
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A +F Q N++ + S+++A A G++E+ I D+ KN +
Sbjct: 314 SAQAIFDRTQEKNVV----SWTSMISAYAQHGSIEVARQI---FDQMPGKNVV------- 359
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI G +ALD+F++M + + PDE V +L+A
Sbjct: 360 ----------SWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAA 402
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
Y +++ Y V A F +MP ++ V W +I EA+ LF+E+Q
Sbjct: 431 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 490
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ DE T+ +L+A ++ G +++G + Y D+ V I+ I+ Y C V
Sbjct: 491 LPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV---IYRVXREIEHY-ACMVDLLGRG 543
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
++G AI G R +KPD V + +L A R H
Sbjct: 544 GLLGEAIELIG-----------RMPMKPDVVVWGALLGACRIHG 576
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 118/196 (60%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KD++S+ +++GY R +++ AR+ FD++P+RD V W MI GY+
Sbjct: 195 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 254
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFA 119
++AL +F+E+++ + DE T++S+L+A +LG L+ G+ I I + ++ +
Sbjct: 255 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314
Query: 120 GNALIDMYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASI 164
GNALIDMY KC TW +++ GLA G+ +K++ +F++M + I
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 374
Query: 165 KPDEVAYVGVLSARTH 180
+PDE+ +VGVL A +H
Sbjct: 375 RPDEITFVGVLVACSH 390
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
+ N + +AR FD +RD V W+ + GY R A LF E+ +++ I
Sbjct: 158 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMI 217
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI 145
T A G +E + + K V TW MI G +
Sbjct: 218 ----TGYAKRGEMESARKLFDEVPKRDV--------------------VTWNAMIAGYVL 253
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
G+ +AL+MF +M PDEV + +LSA T
Sbjct: 254 CGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 287
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F + E D +W TMI G + A++L+ +++ + D+FT +L A
Sbjct: 66 AHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTR 125
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------TVK---FTWTTM 139
L +++G + + + +++ F N LI + C + K W+ +
Sbjct: 126 LCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSAL 185
Query: 140 IVGLAISGNGDKALDMFSQM 159
G A G A +F +M
Sbjct: 186 TAGYARRGELGVARQLFDEM 205
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ V+ A++ Y + A + F M E+D W +++ G +++ LF
Sbjct: 308 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 367
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E++ I DE T V +L A ++ G +E G ++ D+ ++ +I ++D+
Sbjct: 368 EMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDL---- 423
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A D M I+P+ + + +L A R H
Sbjct: 424 ------------LGRAGLLNEAFDFIDTM---KIEPNAIVWRTLLGACRIH 459
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F W TMI G A S + A+ ++SQM ++PD+ + VL A T
Sbjct: 79 FMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 124
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 107/181 (59%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y+ + ++ A + FD+MP ++ V W MI G R+REAL F+ +Q
Sbjct: 247 DVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ 306
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ DE T+V +L + ANLG LE+G+W+ Y+ +N + D F GNAL+DMY KC
Sbjct: 307 DKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSID 366
Query: 131 -------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
++K +++T MI GLA+ G + A +FS+M R I+P+EV ++G+L A +
Sbjct: 367 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426
Query: 180 H 180
H
Sbjct: 427 H 427
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 88/161 (54%), Gaps = 22/161 (13%)
Query: 36 RQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95
++ FD+ P RD V WTT+I + + + A+ F E+ + D T+V +L+A +NL
Sbjct: 166 QKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNL 225
Query: 96 GALELGE----WIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
G L LG+ +I+ YID +K D+F GNAL+DMY KC VK TW
Sbjct: 226 GDLNLGQKVHSYIRHYID---MKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTW 282
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI GLA G +ALD F M +KPDEV VGVL++
Sbjct: 283 NAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNS 323
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + K+V+S+T+++S Y +++ARQ FDQMP ++ V W +MI YLR ++REA
Sbjct: 179 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 238
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +++ S ++ DE T+VSIL A + LG L +G+ I YI NK + N+LIDM
Sbjct: 239 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 298
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T W +I LA+ G G +A+ +F +M PDE+
Sbjct: 299 YAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITL 358
Query: 172 VGVLSARTHN 181
G+LSA +H+
Sbjct: 359 TGLLSACSHS 368
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 84/225 (37%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA--- 91
A++ FDQ+P+ + ++ ++I GY + +A+ LF+ + S + +EFT+ +L A
Sbjct: 41 AQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGC 100
Query: 92 ---------------RANLGALELGE--WIKTYI----------------DKNKVKNDIF 118
+ +G+L + I Y+ DK + DI
Sbjct: 101 KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI--DII 158
Query: 119 AGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGD------------- 150
NAL+DMY KC +WT+MI A G+ +
Sbjct: 159 VRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKN 218
Query: 151 ------------------KALDMFSQMLRASIKPDEVAYVGVLSA 177
+ALD+F++M + + PDE V +L+A
Sbjct: 219 VVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 19/163 (11%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
Y +++ Y V A F +MP ++ V W +I EA+ LF+E+Q
Sbjct: 292 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 351
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ DE T+ +L+A ++ G +++G + Y D+ V I+ I+ Y C V
Sbjct: 352 LPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV---IYRVPREIEHY-ACMVDLLGRG 404
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
++G AI G R +KPD V + +L A R H
Sbjct: 405 GLLGEAIELIG-----------RMPMKPDVVVWGALLGACRIH 436
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 119/195 (61%), Gaps = 23/195 (11%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF +IF ++N V Y G ++ AR+ FD+MP+ D V WT MI GY R+
Sbjct: 139 GFDDDIF--VQNTMVHMYCCCSGG------MEFARKLFDEMPKLDPVTWTAMIGGYARLG 190
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+ A+ LF+++Q + + D+ T+VS+L+A +LGALELG+WI++YI+K +V + N
Sbjct: 191 QSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSN 250
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
AL+DM+ KC +WT++IVGLA+ G G +A+ +F +M + + P
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVP 310
Query: 167 DEVAYVGVLSARTHN 181
+++A++G+LSA +H+
Sbjct: 311 EDIAFIGLLSACSHS 325
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
D L++T+I Y ++ + A+ + + I +++ +L A A L L LG+ +
Sbjct: 72 DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131
Query: 105 KTYIDKNKVKNDIFAGNALIDMYCKCT--VKF--------------TWTTMIVGLAISGN 148
+ K +DIF N ++ MYC C+ ++F TWT MI G A G
Sbjct: 132 HGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQ 191
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSART 179
A+ +F +M A + PD+V V VLSA T
Sbjct: 192 SAGAVGLFRKMQIAGVCPDDVTMVSVLSACT 222
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V + VD A F M +R V WT++I G R EA++LF+E++ S ++
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVP 310
Query: 81 DEFTIVSILTARANLGALELG 101
++ + +L+A ++ G +E G
Sbjct: 311 EDIAFIGLLSACSHSGLVERG 331
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+ V+ T ++ Y V +AR FD+ E++ W MI+G++ + + EAL LF+E+
Sbjct: 220 RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM 279
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
QT I GD+ T+ S+L A +LGALELG+W+ YI K ++ D+ G AL+DMY KC
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSI 339
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
TWT +I+GLA+ G + AL F +M +KPD + +VGVL+A
Sbjct: 340 ETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAAC 399
Query: 179 TH 180
+H
Sbjct: 400 SH 401
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D + +++ Y N + AR+ FD+M ++ V W TMI + + ++ EA+ LF +
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ N+ +E T+V++LTA A L + + I YID++ + L+D+YCKC
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
F+W MI G N ++AL +F +M IK D+V +L A
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298
Query: 179 TH 180
TH
Sbjct: 299 TH 300
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F Q+P ++I G N +EAL +QE+ ++ D +T S+ + N
Sbjct: 41 ARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRN 100
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CKCTVK-------------FTWTTM 139
G+ I + K +D +A N L++MY C C V +W TM
Sbjct: 101 SSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATM 157
Query: 140 IVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 177
I A ++A+ +F +M+++ ++KP+EV V VL+A
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTA 196
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A Q F +MPE+D + WT +I G + AL F E+
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ D T V +L A ++ G ++ G
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEG 408
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M +S+T ++SGY V+ AR FD+ P +D +W ++I GY++ N F+E
Sbjct: 162 IFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEG 221
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+ +Q++ + DE +VSIL A A+LGA+E+G W+ Y+D+ + LIDM
Sbjct: 222 LQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDM 281
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC W MI G+A++G+GD AL +FS+M +A +KPD++ +
Sbjct: 282 YAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITF 341
Query: 172 VGVLSARTHN 181
+ + +A +++
Sbjct: 342 IAIFTACSYS 351
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + TMI ++ + + ++ ++ + + D +T+ +L A A L +
Sbjct: 62 FQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSC 121
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMY--------CKC-------TVKFTWTTMIVGL 143
LGE K DIF GN LI MY +C +WT MI G
Sbjct: 122 HLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGY 181
Query: 144 AISGNGDKA-------------------------------LDMFSQMLRASIKPDEVAYV 172
A G+ + A L MF M ++PDE V
Sbjct: 182 AKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILV 241
Query: 173 GVLSARTH 180
+L A H
Sbjct: 242 SILCACAH 249
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +++K+ +++ ++ GY+ QVD A FD+MP+RD + WT MI G+++ EA
Sbjct: 116 VFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEA 175
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I+S + A NLGAL G W+ Y+ +N++ N+LID+
Sbjct: 176 LAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDL 235
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN +++L F +M R PD V +
Sbjct: 236 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTF 295
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 296 TGALTACSH 304
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 242 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTA 301
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G ++ + ++ I L+D+Y + +G +
Sbjct: 302 CSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSR----------------AGRLE 345
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
A + M +KP+EV +L+A R H
Sbjct: 346 DAFIVVESM---PMKPNEVVIGSLLAACRNH 373
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 116/195 (59%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F + K+ +S+ +++G++ ++++A Q FD+MP RD + WT +I+G L+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL F ++Q S + D +I+++L A A+LGAL LG W+ ++ + K++I
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265
Query: 121 NALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY +C ++F +W ++IVG A++G D++L+ F M + K
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFK 325
Query: 166 PDEVAYVGVLSARTH 180
PD V+Y G L+A +H
Sbjct: 326 PDGVSYTGALTACSH 340
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 49/179 (27%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE--LGEWIK 105
VLWT+ + Y R + EA F ++ + + + T +++L+A A+ + +
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 106 TYIDKNKVK-NDIFAGNALIDMYCKCT-------------VK------------------ 133
Y K + + G ALIDMY KC VK
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT +I GL G ++AL+ F QM R+ + D V+ + VL+A
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILT 90
++ ARQ F +M +R V W ++I G+ VN F E+L F +Q D + LT
Sbjct: 278 IEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFYAMQKEGFKPDGVSYTGALT 336
Query: 91 ARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG 149
A ++ G + G E +K+ I ++D+Y + +G
Sbjct: 337 ACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGR----------------AGRL 380
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ AL+M +M +KP+EV +L+A RTH
Sbjct: 381 EDALNMIEEM---PMKPNEVVLGSLLAACRTH 409
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 118/196 (60%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KD++S+ +++GY R +++ AR+ FD++P+RD V W MI GY+
Sbjct: 160 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 219
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFA 119
++AL +F+E+++ + DE T++S+L+A +LG L+ G+ I I + ++ +
Sbjct: 220 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 279
Query: 120 GNALIDMYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASI 164
GNALIDMY KC TW +++ GLA G+ +K++ +F++M + I
Sbjct: 280 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 339
Query: 165 KPDEVAYVGVLSARTH 180
+PDE+ +VGVL A +H
Sbjct: 340 RPDEITFVGVLVACSH 355
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
+ N + +AR FD +RD V W+ + GY R A LF E+ +++ I
Sbjct: 123 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMI 182
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI 145
T A G +E + + K V TW MI G +
Sbjct: 183 ----TGYAKRGEMESARKLFDEVPKRDV--------------------VTWNAMIAGYVL 218
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
G+ +AL+MF +M PDEV + +LSA T
Sbjct: 219 CGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 252
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F + E D +W TMI G + A++L+ +++ + D+FT +L A
Sbjct: 31 AHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTR 90
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------TVK---FTWTTM 139
L +++G + + + +++ F N LI + C + K W+ +
Sbjct: 91 LCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSAL 150
Query: 140 IVGLAISGNGDKALDMFSQM 159
G A G A +F +M
Sbjct: 151 TAGYARRGELGVARQLFDEM 170
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ V+ A++ Y + A + F M E+D W +++ G +++ LF
Sbjct: 273 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 332
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E++ I DE T V +L A ++ G +E G ++ D+ ++ +I ++D+
Sbjct: 333 EMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDL---- 388
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A D M I+P+ + + +L A R H
Sbjct: 389 ------------LGRAGLLNEAFDFIDTM---KIEPNAIVWRTLLGACRIH 424
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F W TMI G A S + A+ ++SQM ++PD+ + VL A T
Sbjct: 44 FMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 89
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + K+V+S+T+++S Y +++ARQ FDQMP ++ V W +MI YLR ++REA
Sbjct: 246 IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 305
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +++ S ++ DE T+VSIL A + LG L +G+ I YI NK + N+LIDM
Sbjct: 306 LDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDM 365
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T W +I LA+ G G +A+ +F +M PDE+
Sbjct: 366 YAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITL 425
Query: 172 VGVLSARTHN 181
G+LSA +H+
Sbjct: 426 TGLLSACSHS 435
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y+ + AR+ FD + ++ V W +MI GY + ++EA LF++++ +
Sbjct: 128 ALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEP 187
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D FT V++L+ + L+LG ++ I+ VK DI NAL+DMY KC
Sbjct: 188 DGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIF 247
Query: 131 -----TVKFTWTTMIVGLAISGNGD-------------------------------KALD 154
+WT+MI A G+ + +ALD
Sbjct: 248 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 307
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F++M + + PDE V +L+A
Sbjct: 308 LFNKMRNSRVVPDEATLVSILAA 330
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ FDQ+P+ + ++ ++I GY + +A+ LF+ + S + +EFT+ +L A
Sbjct: 41 AQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGC 100
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
A + K + + +F NALI +Y C + +W +M
Sbjct: 101 KSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSM 160
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
I G A GN +A +F +M ++PD +V +LS
Sbjct: 161 IGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLS 197
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V Y +++ Y V A F +MP ++ V W +I EA+ LF+E+Q
Sbjct: 356 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 415
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
+ DE T+ +L+A ++ G +++G + Y D+ V I+ I+ Y C V
Sbjct: 416 DGTLPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV---IYRVPREIEHY-ACMVDLL 468
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
++G AI G R +KPD V + +L A R H
Sbjct: 469 GRGGLLGEAIELIG-----------RMPMKPDVVVWGALLGACRIH 503
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y EQV +AR FD M +++ V W+ M+ GY RV EAL LF+E+Q +
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 273
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+VS+++A A GAL+LG+W+ YID+ + D+ ALIDMY KC +
Sbjct: 274 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 333
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSA H+
Sbjct: 334 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 391
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 61/129 (47%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ AR FD M E+D W+ MI G+ +AL LF + +
Sbjct: 316 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 375
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A A+ G +E G + + +K + ++D+ C+ + +
Sbjct: 376 PNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSF 435
Query: 140 IVGLAISGN 148
++G+ +S N
Sbjct: 436 VIGMPVSPN 444
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 36 RQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARAN 94
R FDQ+P+ + ++I L AL +++ ++ + + FT+ L A A
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 187
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV---------KFTWTT 138
+ A G + + + + L+++Y KC TV W+
Sbjct: 188 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 247
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
M+ G + G ++AL +F +M ++PDEV V V+SA
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISA 286
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y EQV +AR FD M +++ V W+ M+ GY RV EAL LF+E+Q +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 224
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+VS+++A A GAL+LG+W+ YID+ + D+ ALIDMY KC +
Sbjct: 225 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSA H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 61/129 (47%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ AR FD M E+D W+ MI G+ +AL LF + +
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 326
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A A+ G +E G + + +K + ++D+ C+ + +
Sbjct: 327 PNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSF 386
Query: 140 IVGLAISGN 148
++G+ +S N
Sbjct: 387 VIGMPVSPN 395
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 36 RQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARAN 94
R FDQ+P+ + ++I L AL +++ ++ + + FT+ L A A
Sbjct: 80 RNLFDQIPDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACAA 138
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV---------KFTWTT 138
+ A G + + + + L+++Y KC TV W+
Sbjct: 139 VPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSA 198
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
M+ G + G ++AL +F +M ++PDEV V V+SA
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISA 237
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F +DV+++T ++SGY+N QV IAR+ FD+MPE++ V W +I GY+R+
Sbjct: 163 MDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRI 222
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F+EAL +F ++Q S + +IV LTA A LGAL+ G WI Y+ ++ + D G
Sbjct: 223 GFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLG 282
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALIDMY KC + +T +I GLA + A+D+F++M +
Sbjct: 283 TALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV 342
Query: 166 PDEVAYVGVLSA 177
P+EV +V VL+A
Sbjct: 343 PNEVTFVCVLNA 354
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y +++A FD+M +RD +T +I G ++ A+ LF +Q ++
Sbjct: 283 TALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV 342
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T V +L A + +G ++ G
Sbjct: 343 PNEVTFVCVLNACSRMGMVDEG 364
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 14 KDVISYTAIVSGYIN---REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
KD + I+S + + R + A + F + + +W TM+ ++ N A +L+
Sbjct: 41 KDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLY 100
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+ + SN + + FT ++ A ++ L++G + K ++ F N LI +Y C
Sbjct: 101 KHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANC 160
Query: 131 ------------TVK---FTWTTMIVGLAISGNGDKALDMFSQM 159
++K TWT +I G SG A ++F +M
Sbjct: 161 GFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRM 204
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + IS+ I+SG++ Q+ AR FD+MP R V WT +I GY R+ + +A
Sbjct: 152 LFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDA 211
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+E+Q + I DE +I+S+L A A LGALE G+WI + +N + NALI+M
Sbjct: 212 LDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEM 271
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +W+TMI GLA G +A+ +F +M + +IKP+ + +
Sbjct: 272 YTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITF 331
Query: 172 VGVLSARTH 180
VG+LSA H
Sbjct: 332 VGLLSACAH 340
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y +D A Q FDQM RD + W+TMI G + REA+ +F+ ++ +NI
Sbjct: 266 NALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIK 325
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T V +L+A A+ G E G + T ++ +I +L+D+
Sbjct: 326 PNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDL------------ 373
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G +ALD+ +M +KPD + +LS+ RTH
Sbjct: 374 ----LGRAGRLSQALDIVEKM---PMKPDSKIWGSLLSSCRTH 409
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 55/203 (27%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDG-------YLRVNRFREALTLFQEIQTSN--IMG 80
E +D A F ++ + + L+ MI L ++ +++ L ++ QTS I+
Sbjct: 34 EDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILP 93
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
DEFT ++ A A LG LG+ + K K+ + NALIDMY KC
Sbjct: 94 DEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLF 153
Query: 131 -----------------TVKF-------------------TWTTMIVGLAISGNGDKALD 154
V+ +WT +I G G+ ALD
Sbjct: 154 DEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALD 213
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +M A I+PDE + + VL A
Sbjct: 214 VFREMQIAGIEPDEASIISVLPA 236
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++VI +TA++ Y+ +D AR FD+MP RD V W+TMI GY + R E+L LF+ +
Sbjct: 338 QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ +N +E T+V +L+A A LG+ ELGE I YI+ + + G+ALIDMY KC
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V TW +MI GLA++G + A+ ++ +M+ I+P+EV +V +L+A
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517
Query: 179 TH 180
TH
Sbjct: 518 TH 519
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L F M KD I +++GY V+ AR+ FD MP R W +MI Y
Sbjct: 225 MDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHG 284
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
FREALTLF ++ + TI ++ + A G L+ G + +I + ++N +
Sbjct: 285 GEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQN-VIVH 343
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++MY KC W+TMI G + +G ++L++F +M + K
Sbjct: 344 TALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCK 403
Query: 166 PDEVAYVGVLSA 177
P+EV VGVLSA
Sbjct: 404 PNEVTLVGVLSA 415
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M++K+ +++ ++ GY+ QV+ A + FD+M RD + WT M++G+++ EA
Sbjct: 78 IFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEA 137
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+ F+E+Q S + D I++ L A NLGAL G WI Y+ KN++ N+LID+
Sbjct: 138 LSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDL 197
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 198 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTF 257
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 258 TGALTACSH 266
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 204 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTA 263
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + +T ++ I ++D+Y + +G +
Sbjct: 264 CSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSR----------------AGRLE 307
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL + M +KP+EV +L+A
Sbjct: 308 DALKVVQSM---PMKPNEVVIGSLLAA 331
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ +DV+S+T I+ GY + IAR FD MP +D W +I GY + R +EA
Sbjct: 400 LFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEA 459
Query: 67 LTLFQEIQ--TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L +F+E+Q S D+ T++S L+A A LGA+++GEWI YI K +++ + +LI
Sbjct: 460 LAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLI 519
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY K F W+ MI GLA+ G G+ A+++F M +KP+ V
Sbjct: 520 DMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSV 579
Query: 170 AYVGVLSARTHN 181
+ +L A +H+
Sbjct: 580 TFTNLLCACSHS 591
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
DV +++ Y + +D+A F+ + +D V W +M+ G+++ +AL LF+
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER 333
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-T 131
++ + + T+VS+++A A L LG + YID+N++ ++ NA IDM+ KC
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGE 393
Query: 132 VKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
V+ +WTT+I G A A D+F M R I
Sbjct: 394 VEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIP 441
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 18/164 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYL-RVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D AR+ FDQ+P+ + W +I + + L + + S ++FT ++
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK----------------- 133
A A +G+ + K +D+F N+LI Y C
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDI 308
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +M+ G G DKALD+F +M + P+ V V V+SA
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSA 352
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 15/178 (8%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+ I+ GY VDIAR FDQM RD + + +MI GY+ R R+AL LF +++ +
Sbjct: 305 WNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGM 364
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TV 132
D FT+VS+LTA A+LGAL G + I++ V+ D++ AL+DMY KC T
Sbjct: 365 RADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATA 424
Query: 133 KF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
F TW+ MI GLA +G G AL+ F QM R +P V Y+ VL+A +H+
Sbjct: 425 VFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD + + ++ G + +D AR+ Q PER+ V WT++I GY R R +A+
Sbjct: 161 FDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAV 220
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F + + + DE ++ L+A + L LE G + + K +++ LIDMY
Sbjct: 221 YCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMY 280
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC W +I G G+ D A +F QM
Sbjct: 281 AKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQM 328
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 55/145 (37%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
D AR+ FD++P +D V+W T+I G +R EA L + E +VS
Sbjct: 155 DDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLL-------VQAPERNVVS----- 202
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA 152
WT++I G + +G A
Sbjct: 203 -------------------------------------------WTSLIAGYSRAGRPADA 219
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
+ F+ ML ++PDEVA +G LSA
Sbjct: 220 VYCFNCMLSDGVEPDEVAVIGALSA 244
Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV TA+V Y+ +VD A F +M ERD W+ MI G +AL F ++
Sbjct: 401 EDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM 460
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ T +++LTA ++ L G + +K+ I +ID+
Sbjct: 461 KRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDL------ 514
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
LA SG D+A+ + M ++P+ V + +LSA R H
Sbjct: 515 ----------LARSGLLDEAMHLVQTM---PMQPNAVIWASILSACRVH 550
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K+ +++ ++ GY+ QV A + FD+MPE D + WT M++G+++ EA
Sbjct: 106 VFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEA 165
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL LG W+ Y+ KN++ N+LID+
Sbjct: 166 LVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDL 225
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KP+ V +
Sbjct: 226 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTF 285
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 286 TGALTACSH 294
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ AR+ FD+M +R V W ++I G+ E+L F+++Q + T LTA
Sbjct: 232 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTA 291
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G ++ G + ++ + I L+D+Y + +G +
Sbjct: 292 CSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSR----------------AGRLE 335
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL + M +KP+EV +L+A R H
Sbjct: 336 DALKVVQSM---PMKPNEVVIGSLLAACRNH 363
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/190 (36%), Positives = 112/190 (58%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD +++T ++ GY E + AR+ + MP++D V W +I Y + + EA
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F E+Q N+ ++ T+VS L+A A +GALELG WI +YI K+ ++ + +ALI
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIH 408
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +V+ F W+ MI GLA+ G G++A+DMF +M A++KP+ V
Sbjct: 409 MYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVT 468
Query: 171 YVGVLSARTH 180
+ V A +H
Sbjct: 469 FTNVFCACSH 478
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 19/182 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++ Y + +D A + F + E+D V W +MI+G+++ +AL LF++++
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ ++ T+V +L+A A + LE G + +YI++N+V ++ NA++DMY KC
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TWTTM+ G AIS + + A ++ + M + I VA+ ++SA
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI----VAWNALISAYE 340
Query: 180 HN 181
N
Sbjct: 341 QN 342
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLR-VNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
++ AR+ FD++P+ + W T+I Y + + S +++T ++
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVK----FT 135
A A + +L LG+ + K+ V +D+F N+LI Y C T+K +
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI G G+ DKAL++F +M +K V VGVLSA
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 48/92 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ +R+ F+ + +RD +W+ MI G EA+ +F ++Q +N+
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKN 111
+ T ++ A ++ G ++ E + ++ N
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DVI++T++V GY R ++ AR+ FD MP R+ V W M+ GY+ + EA
Sbjct: 214 VFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEA 273
Query: 67 LTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L F ++ + + +E +VSIL+A A+LGAL+ G+WI YIDKN++ ALID
Sbjct: 274 LQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALID 333
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TWT+MI GL++ G G + L FS+ML KPD++
Sbjct: 334 MYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDIT 393
Query: 171 YVGVLSARTHN 181
+GVL+ +H+
Sbjct: 394 LLGVLNGCSHS 404
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 22 IVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN--I 78
++ YI + AR FDQ P ++W MI Y + +E+L LF ++
Sbjct: 93 LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152
Query: 79 MGDEFTIVSILTARANLGALE-LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---- 133
D++T + TA + L GE + + K+ ++DIF GN+L++MY +
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212
Query: 134 -----------FTWTTMIVGLAISGNGDKALDMFSQM 159
TWT+++ G A+ G +A ++F M
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMM 249
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 12 KNKDVISY---TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KN+ ++S TA++ Y ++D AR+ FD + +RD + WT+MI G E L
Sbjct: 318 KNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLW 377
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
F E+ D+ T++ +L ++ G +E G
Sbjct: 378 TFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEG 410
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 17/188 (9%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G +N ++ TA++ Y ++ AR+ FD M RD V W+ MI GY + ++ REAL
Sbjct: 251 GLARNPKLV--TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALG 308
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF E+Q + + ++ T+VS+L+A A LGALE G+W+ +Y+ + ++ G AL+D Y
Sbjct: 309 LFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYA 368
Query: 129 KCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
KC +TWT +I G+A +G G +AL++FS M A I+P +V ++G
Sbjct: 369 KCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIG 428
Query: 174 VLSARTHN 181
VL A +H+
Sbjct: 429 VLMACSHS 436
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++++ Y + V AR FD E V+W ++ YL+ + E + +F+ +
Sbjct: 154 DRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGML 213
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ DE T+VS++TA +G +LG+W+ ++D+ + + AL+DMY KC
Sbjct: 214 EVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIG 273
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G + +AL +FS+M A ++P++V V VLSA
Sbjct: 274 KARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSA 331
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +D A + F+ MP ++ WT +I G R REAL LF ++ + I
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIE 420
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T + +L A ++ +E G
Sbjct: 421 PTDVTFIGVLMACSHSCLVEEG 442
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DVIS+ +++SGY Q+ A+ F M ++ V WT MI GY + + E
Sbjct: 165 KVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVE 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+E+Q + I DE +++S+L + A+LG+LELG+WI Y ++ + NALI+
Sbjct: 225 AMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIE 284
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC + +W+TMI G A GN +A + F +M RA +KP+ +
Sbjct: 285 MYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGIT 344
Query: 171 YVGVLSARTH 180
++G+LSA +H
Sbjct: 345 FLGLLSACSH 354
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 55/200 (27%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSILT 90
+D A + F+Q+ + L+ ++I Y + + + + +++++ I D FT +
Sbjct: 58 MDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFK 117
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF---------------- 134
+ A+LG+ LG+ + ++ K + + NALIDMY +KF
Sbjct: 118 SCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMY----MKFDDLVDAHKVFDEMSER 173
Query: 135 ---TWTTMIVGLAISGNGDK-------------------------------ALDMFSQML 160
+W +++ G A G K A+D F +M
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233
Query: 161 RASIKPDEVAYVGVLSARTH 180
A I+PDE++ + VL + H
Sbjct: 234 LAGIEPDEISLISVLPSCAH 253
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G +K V + A++ Y + A Q F+Q +D + W+TMI GY A
Sbjct: 271 GLLKQTGVCN--ALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFE 328
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
F E+Q + + + T + +L+A +++G + G ++ +++ I LID+
Sbjct: 329 TFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDV- 387
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A+++ M +KPD + +LS+
Sbjct: 388 ---------------LARAGKLERAVEITKTM---PVKPDSKIWGSLLSS 419
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 112/189 (59%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+++ +++GY+ AR+ FD MPER+ V WTT+I GY ++ R +A
Sbjct: 135 VFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKA 194
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +F+ +Q I D ++S+L A +LGA++LGEW+ ++ + + +I N++IDM
Sbjct: 195 VEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDM 254
Query: 127 Y--CKCTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y C C K TWTT+I G A+ G G +A++MF +M R ++ P+ V +
Sbjct: 255 YMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTF 314
Query: 172 VGVLSARTH 180
+ +LSA +H
Sbjct: 315 LAILSACSH 323
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ +I+ Y+ ++ A + F+ M E+ V WTT+I G+ +A+ +F +
Sbjct: 243 QEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRM 302
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
+ N+ + T ++IL+A +++G +LG W + + ++K + ++D+
Sbjct: 303 ERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDL 356
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 115/190 (60%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++ GY R V +AR+ FD +RD W++MI Y + +E
Sbjct: 137 KVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKE 196
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L++E++ + + D ++VS+L+A + +GAL +G + +++ N+V+ D+ G AL+D
Sbjct: 197 ALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVD 256
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC VK TW++MI+GLA G G AL +FS+M+ ++P+E+
Sbjct: 257 MYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEIT 316
Query: 171 YVGVLSARTH 180
++GVL A TH
Sbjct: 317 FIGVLIACTH 326
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ + + F MP +D + W++MI G +AL+LF E+ + +
Sbjct: 252 TALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQ 311
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+E T + +L A ++G + G K Y +++ D++ + M
Sbjct: 312 PNEITFIGVLIACTHVGLVNDG---KKYF------------SSMSDVHGVVPRMEHYGCM 356
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G+ ++A+++ M + KPD + + +L A R H
Sbjct: 357 VDLLGRAGHVEEAMELIRSM---TFKPDPIIWRTLLGACRIH 395
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 16/197 (8%)
Query: 1 MGFTLEIFGTM-KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLR 59
+G E+F + + + S+ A++ GY VD+AR FDQM +RD V + ++I GY+
Sbjct: 288 IGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIH 347
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R REAL LF +++ ++ D FT+VS+LTA A+LGAL G + I++ V+ DI+
Sbjct: 348 GGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYL 407
Query: 120 GNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
G AL+DMY KC +V+ TW+ MI GLA +G G AL+ F M
Sbjct: 408 GTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGF 467
Query: 165 KPDEVAYVGVLSARTHN 181
+P+ V Y+ +L+A +H+
Sbjct: 468 QPNSVTYIAILTACSHS 484
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD +++T ++SG +D A P R+ + WT +I GY R R EA+
Sbjct: 163 FDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAV 222
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN---ALI 124
F + + I DE T++ +L+A A L L G + + + K + +G ALI
Sbjct: 223 DCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGE---KGMLMSGKLVVALI 279
Query: 125 DMYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
DMY KC +W MI G G+ D A +F QM
Sbjct: 280 DMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQM 330
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ TA++ Y+ +V+ A F M RD W+ MI G + AL F ++
Sbjct: 404 DIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMK 463
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ T ++ILTA ++ L+ G + Y ++ ++ ++I LI+ Y
Sbjct: 464 VDGFQPNSVTYIAILTACSHSCLLDEG---RLYFEEMRLLHNI---RPLIEHY------- 510
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
MI L SG D+A+D+ M ++P+ V + +LSA R H
Sbjct: 511 --GCMIDLLGRSGLLDEAMDLVRTM---PMQPNAVIWASILSACRVH 552
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT +I G + +G +A+D F+ ML I+PDEV +G+LSA
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSA 246
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 16/196 (8%)
Query: 2 GFTLEIFGTM-KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
G E+F + + + S+ AI+ GY VD+AR FDQM RD + + +MI GY+
Sbjct: 230 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 289
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ REAL LF ++ ++ D FT+VS+L+A A+LGAL G + I+ V+ DI+ G
Sbjct: 290 GQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIG 349
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC T+ F WT MI GLA +G G L+ F QM +
Sbjct: 350 TALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQ 409
Query: 166 PDEVAYVGVLSARTHN 181
P+ V+Y+ VL+A +H+
Sbjct: 410 PNPVSYIAVLTACSHS 425
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD +S+T ++SG + AR Q P RD + WT++I Y R +R +EA+
Sbjct: 104 FDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAV 163
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ + + I D+ T++ +L+A + L LELG + + + + ALIDMY
Sbjct: 164 DCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMY 223
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC +W +I G G+ D A +F QM
Sbjct: 224 AKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQM 271
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT++I + + +A+D F ML I PD+V +GVLSA
Sbjct: 145 SWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSA 187
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
+ VD + D + E D + W +++ Y +EA+ +++ M + VS+L
Sbjct: 884 DSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLL 942
Query: 90 TARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKC--------------TVKF 134
G +LG I + K + + LIDMY KC ++
Sbjct: 943 ALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIAL 1002
Query: 135 TWTTMIVGLAISGNG-DKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ ++ N D AL++ M+ + PD+V + + A
Sbjct: 1003 ECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKA 1046
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 16/196 (8%)
Query: 2 GFTLEIFGTM-KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
G E+F + + + S+ AI+ GY VD+AR FDQM RD + + +MI GY+
Sbjct: 292 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 351
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ REAL LF ++ ++ D FT+VS+L+A A+LGAL G + I+ V+ DI+ G
Sbjct: 352 GQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIG 411
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC T+ F WT MI GLA +G G L+ F QM +
Sbjct: 412 TALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQ 471
Query: 166 PDEVAYVGVLSARTHN 181
P+ V+Y+ VL+A +H+
Sbjct: 472 PNPVSYIAVLTACSHS 487
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KD +S+T ++SG + AR Q P RD + WT++I Y R +R +EA+
Sbjct: 166 FDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAV 225
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ + + I D+ T++ +L+A + L LELG + + + + + ALIDMY
Sbjct: 226 DCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMY 285
Query: 128 CKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
KC +W +I G G+ D A +F QM
Sbjct: 286 AKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQM 333
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT++I + + +A+D F ML I PD+V +GVLSA
Sbjct: 207 SWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSA 249
Score = 39.3 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA- 97
F+++P ++I LR N F AL + + + D+ T + + A +L A
Sbjct: 1056 FNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKA-ISLSAS 1114
Query: 98 --LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT----------------WTTM 139
L + + + + K + D+ ++LI Y C + + +T +
Sbjct: 1115 PSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYA-CAGQLSSSHLIFEGLLDPNVICFTAI 1173
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I A G+G +A+++F QM+ + +KPD V ++ ++
Sbjct: 1174 ISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAG 1211
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
+ VD + D + E D + W +++ Y +EA+ +++ M + VS+L
Sbjct: 946 DSVDTVKALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLL 1004
Query: 90 TARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKC--------------TVKF 134
G +LG I + K + + LIDMY KC ++
Sbjct: 1005 ALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIAL 1064
Query: 135 TWTTMIVGLAISGNG-DKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ ++ N D AL++ M+ + PD+V + + A
Sbjct: 1065 ECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKA 1108
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D +S+ ++SG++ Q+ AR F++M ++ WT ++ GY R+ + +A
Sbjct: 174 VFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADA 233
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+ +Q I DE ++VS+L A LGALELG+WI Y DK +I NALI+M
Sbjct: 234 LEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEM 293
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +W+TMIVGLA G +A+++F +M +A I+P + +
Sbjct: 294 YAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITF 353
Query: 172 VGVLSARTH 180
VG+L+A H
Sbjct: 354 VGLLTACAH 362
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ A++ Y +D R+ FDQM ERD + W+TMI G R REA+ LFQE+
Sbjct: 282 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 341
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
Q + I T V +LTA A+ G L G Y + K +I G ++ Y C V
Sbjct: 342 QKAKIEPSIITFVGLLTACAHAGLLNEG---LRYFESMKRDYNIEPG---VEHY-GCLVN 394
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +SG D+AL++ +M R KPD + +LS+ R+H
Sbjct: 395 L--------LGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSCRSH 431
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 51/197 (25%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-----QTSNIMGDEFTI 85
+ + A F + + + L+ MI Y + A+T+++++ + I D+FT
Sbjct: 61 ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTF 120
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
++ + A L +LG+ + ++ K K++ N+L++MY KC
Sbjct: 121 PFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 180
Query: 131 -------------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
F+WT ++ G A G AL+ F +M
Sbjct: 181 RDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM 240
Query: 160 LRASIKPDEVAYVGVLS 176
I+PDE++ V VL
Sbjct: 241 QMVGIEPDEISLVSVLP 257
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 48/228 (21%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINR--EQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG E+F M KD S+ ++ GY + VD AR+ FDQMPERD V W +MIDGY
Sbjct: 197 MGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYA 256
Query: 59 RVNRFREALTLFQEIQTSNIMG-------------------------------DEFTIVS 87
R R EA +LF+E+ N++ D V
Sbjct: 257 RHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVG 316
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------- 132
++A A LGALE G W+ +Y++K K+ +D+ ALIDMY KC
Sbjct: 317 AVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERS 376
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW MIVGL G G A+ +F +M S+ D+++ +G+L+A TH
Sbjct: 377 VVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTH 424
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA++ Y+ +D+A F+ M ER V W MI G +A+TLF ++
Sbjct: 345 DVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRME 404
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
++ D+ +++ +LTA + G + G
Sbjct: 405 AESVAVDDLSVLGMLTACTHAGLVSEG 431
Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 21/146 (14%)
Query: 34 IARQCFDQMP---ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+A F ++P RD W T I + R R AL F ++ + D +T ++L
Sbjct: 63 LADVVFARLPLPAARDPFAWNTAIRLHAPA-RPRAALLYFARMRRCGVRPDAYTFPAVLK 121
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-----------------CTVK 133
A G + + + D+F NALI YC+
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDL 181
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G A +MF +M
Sbjct: 182 VSWNSMVAGYVGCGEMGLAQEMFDEM 207
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++F M K+ +S++ ++ G+ +D A + FDQMPE++ V WTTM+DG+ R
Sbjct: 266 MKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRN 325
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL++F ++ + + FTIVS L+A A +G LE G I YI N + G
Sbjct: 326 GDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALG 385
Query: 121 NALIDMYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
AL+DMY KC +++ TWT MI G AI G+ ++A+ F QM+ A I
Sbjct: 386 TALVDMYAKCGNIESASEVFGETEQKSIR-TWTVMIWGWAIHGHSEQAIACFKQMMFAGI 444
Query: 165 KPDEVAYVGVLSARTHN 181
KPDEV ++ +L+A H+
Sbjct: 445 KPDEVVFLALLTACMHS 461
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++S R+ ++ + F+ ++ + +I G + F A+ F+ + S I
Sbjct: 117 TQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIK 176
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D T +L + A L + ELG I I + ++ D F +L+DMY K
Sbjct: 177 PDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKV 236
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+ W +I G +G+ KA+ +F M
Sbjct: 237 FDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAM 276
Score = 40.4 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A + F + ++ WT MI G+ +A+ F+++ + I
Sbjct: 386 TALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIK 445
Query: 80 GDEFTIVSILTARANLGALELG 101
DE +++LTA + G +++G
Sbjct: 446 PDEVVFLALLTACMHSGQVDIG 467
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K VI++T ++ GY N + +D AR+ FD MPER+ V W TMI GY + + +E
Sbjct: 198 LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEG 257
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ LFQE+Q T+++ D+ TI+S+L A ++ GAL LGEW ++ + K+ + A++D
Sbjct: 258 IRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILD 317
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W MI G A++GN ALD+F M+ KPDE+
Sbjct: 318 MYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEIT 376
Query: 171 YVGVLSARTH 180
+ V++A H
Sbjct: 377 MLAVITACNH 386
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLR 59
MG F M ++ +S+TA++SGYI ++D+A + FDQMP +D V++ M+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
A LF E+ ++ T +++ N+ DI A
Sbjct: 189 SGDMTSARRLFDEMTHKTVI----TWTTMIHGYCNI-------------------KDIDA 225
Query: 120 GNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
L D + + +W TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 226 ARKLFDAMPERNL-VSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
VIS +A+ GY AR+ FDQ P+R D L +MI YL ++ ++ L+++++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---- 129
D FT ++ + + + G + + I + D++ ++DMY K
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 130 -CT----------VKFTWTTMIVGLAISGNGDKALDMFSQM 159
C + +WT +I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DVIS+ +++SGY Q+ A+ F M ++ V WT MI GY + + E
Sbjct: 165 KVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVE 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+E+Q + I DE +++S+L + A LG+LELG+WI Y ++ NALI+
Sbjct: 225 AMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIE 284
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V +W+TMI G A GN A++ F++M RA +KP+ +
Sbjct: 285 MYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGIT 344
Query: 171 YVGVLSARTH 180
++G+LSA +H
Sbjct: 345 FLGLLSACSH 354
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 47/195 (24%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSI 88
E +D A + F+Q+ + L+ ++I Y + + + + +++++ + S + D FT +
Sbjct: 56 EDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFM 115
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------ 130
+ A+LG+ LG+ + ++ K + + NALIDMY K
Sbjct: 116 FKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV 175
Query: 131 ----------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
+WT MI G G +A+D F +M A
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235
Query: 163 SIKPDEVAYVGVLSA 177
I+PDE++ + VL +
Sbjct: 236 GIEPDEISLISVLPS 250
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A Q F QM +D + W+TMI GY A+ F E+Q + +
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKP 340
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A +++G + G + +++ I LID+
Sbjct: 341 NGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDV------------- 387
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A+++ M +KPD + +LS+
Sbjct: 388 ---LARAGKLERAVEITKTM---PMKPDSKIWGSLLSS 419
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 16/180 (8%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
+++T++V+G+ V+ AR+ F++MPERD V W MI G + EAL LF+ +
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---- 132
+ + T+VS+L+A GALE G+W+ +++K +++ D F G AL+DMY KC
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228
Query: 133 -----------KFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSARTH 180
TW MI GLA++G KALDMF QM L ++ PDEV +VGVL A +H
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 116/192 (60%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G+ +F +D +S+TA+++GY R +D AR+ F+++P RD V W MI GY +
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RF EAL FQE++ +N+ +E T+V++L+A A G+LELG W++++I+ + + +++
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC +W MI G + + +AL +F +M +++++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 166 PDEVAYVGVLSA 177
P++V +V +L A
Sbjct: 363 PNDVTFVSILPA 374
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 16/176 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D AR F+ + E+D + W MI GY +N ++EAL LF+++Q SN+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKC--------- 130
++ T VSIL A A LGAL+LG+WI YIDK + + +LIDMY KC
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W MI GLA+ G+ + AL++F QM +PD++ +VGVLSA +H
Sbjct: 424 FAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 46/185 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + + + +W TMI G + A+ + + + + +T +L + A +GA
Sbjct: 89 FESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGAT 148
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT------ 135
+ G+ I ++ K +++D F +LI+MY + V FT
Sbjct: 149 QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGY 208
Query: 136 -----------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
W MI G A SG ++AL F +M RA++ P+E V
Sbjct: 209 TLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268
Query: 173 GVLSA 177
VLSA
Sbjct: 269 TVLSA 273
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+T+++ Y ++ A+Q F M + W MI G AL LF++++
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 79 MGDEFTIVSILTARANLGALELG 101
D+ T V +L+A ++ G +ELG
Sbjct: 464 EPDDITFVGVLSACSHAGLVELG 486
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 116/192 (60%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G+ +F +D +S+TA+++GY R +D AR+ F+++P RD V W MI GY +
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
RF EAL FQE++ +N+ +E T+V++L+A A G+LELG W++++I+ + + +++
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC +W MI G + + +AL +F +M +++++
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362
Query: 166 PDEVAYVGVLSA 177
P++V +V +L A
Sbjct: 363 PNDVTFVSILPA 374
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 16/176 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D AR F+ + E+D + W MI GY +N ++EAL LF+++Q SN+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKC--------- 130
++ T VSIL A A LGAL+LG+WI YIDK + + +LIDMY KC
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W MI GLA+ G+ + AL++F QM +PD++ +VGVLSA +H
Sbjct: 424 FAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 46/185 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + + + +W TMI G + A+ + + + + +T +L + A +GA
Sbjct: 89 FESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGAT 148
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT------ 135
+ G+ I ++ K +++D F +LI+MY + V FT
Sbjct: 149 QEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGY 208
Query: 136 -----------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
W MI G A SG ++AL F +M RA++ P+E V
Sbjct: 209 TLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMV 268
Query: 173 GVLSA 177
VLSA
Sbjct: 269 TVLSA 273
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+T+++ Y ++ A+Q F M + W MI G AL LF++++
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 79 MGDEFTIVSILTARANLGALELG 101
D+ T V +L+A ++ G +ELG
Sbjct: 464 EPDDITFVGVLSACSHAGLVELG 486
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 109/181 (60%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++++ Y D A + F++MP ++ V W+ +I GY++ NRF++AL LFQ++
Sbjct: 231 DVYIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDML 290
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+++ ++ T+ S+LTA A LGAL+ G W+ YID+N ++ + G ALIDMY KC
Sbjct: 291 LTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNSLEMNSILGTALIDMYAKCGCIS 350
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TWT MI GLA+ G+ +L++FS M+ ++P+ V +VG+L+A
Sbjct: 351 EAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQPNGVTFVGILNACA 410
Query: 180 H 180
H
Sbjct: 411 H 411
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++++ + N V A Q D+ P R+ V WT MIDGY+R + + F+++++ +
Sbjct: 135 SLITAFSNCGCVQFAHQVLDESPHRNLVTWTAMIDGYVRNGFPVDGIKCFKKMRSMGVKI 194
Query: 81 DEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALIDMYCKC--------- 130
DE T+VS+L A G + G W+ Y++ +VK D++ G++L+DMYCKC
Sbjct: 195 DEITVVSVLCAAGMAGDVWFGRWVHGFYVESGRVKWDVYIGSSLLDMYCKCGYCDDACKL 254
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK W+ +I G AL +F ML ++P++ VL+A
Sbjct: 255 FNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDMLLTDVRPNQCTLSSVLTA 307
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + A F+++ ++ WT MI+G +L LF + ++ +
Sbjct: 337 TALIDMYAKCGCISEAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQ 396
Query: 80 GDEFTIVSILTARANLGALELGE 102
+ T V IL A A+ G + +G
Sbjct: 397 PNGVTFVGILNACAHGGLVHIGR 419
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+IS+ +++SGY+ + A F MPE+D V W+ MI GY + F EAL LFQE+Q
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ DE +VS ++A +L L+LG+WI YI +NK++ ++ LIDMY KC
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW +I+GLA++G+ +++L+MF+ M + P+E+ ++GVL A
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515
Query: 180 H 180
H
Sbjct: 516 H 516
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 49/223 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFR 64
+F M ++ I+ ++++ + + V+ AR+ F+ + ERD V W+ M+ Y +
Sbjct: 193 VFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGE 252
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL LF E++ S + DE +VS L+A + + +E+G W+ K V++ + NALI
Sbjct: 253 EALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALI 312
Query: 125 DMYCKC---------------------------------TVK--------------FTWT 137
+Y C +++ +W+
Sbjct: 313 HLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWS 372
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
MI G A +AL +F +M ++PDE A V +SA TH
Sbjct: 373 AMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTH 415
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 18/197 (9%)
Query: 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GF E IF DV+S+ +++ G ++D +R+ FD+MP ++ + W +MI GY+
Sbjct: 173 GFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYV 232
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R F+EAL LF ++Q I EFT+VS+L A A +GAL G WI YI KN ++ +
Sbjct: 233 RNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAI 292
Query: 119 AGNALIDMYCK---------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
A+IDMYCK C +W +MI GLA++G +A+ +F + +S
Sbjct: 293 VVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSS 352
Query: 164 IKPDEVAYVGVLSARTH 180
+KPD ++++ VL+A H
Sbjct: 353 LKPDCISFMAVLTACNH 369
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 102/177 (57%), Gaps = 15/177 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V+ Y E++ AR+ F++MP R+ V WT MI G+ RV EA+ LF+E+Q + I
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D T+VS+++A A GAL++G W+ YI+K V D+ AL+DMY KC
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 131 ----TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
VK T W++MI+G A G A+D F QML + PD V ++ VLSA H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHG 307
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEI-QTSNIMGDEFTIVSIL 89
++ AR F Q+P + W ++I GY +++ +E + LF+++ +T + + FT+ +L
Sbjct: 40 INYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVL 99
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF-------------- 134
A A + A G + +++ K+ + +F +L++ Y KC + F
Sbjct: 100 KACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLV 159
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT MI G A G D+A+++F +M +A I+PD + V V+SA
Sbjct: 160 AWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSA 202
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A+Q F MP +D W++MI G+ ++A+ FQ++ + +
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVT 291
Query: 80 GDEFTIVSILTARANLGALELGE--W-------IKTYIDKNKVKNDIFAGNALIDMYCKC 130
D T +++L+A A+ G + G W I+ ++ K D+ + L++ +
Sbjct: 292 PDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRI 351
Query: 131 TVKF-------TWTTMIVG 142
T TW ++++G
Sbjct: 352 TTTMKIPPNAATWRSLLMG 370
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y E+V +AR FD M E ++ V W++MI GY R+ EAL LF+++Q +
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+VS+++A A GAL+LG+W+ +ID+ + D+ ALIDMY KC +
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVGLA+ G + AL +FS+ML+ ++P+ V +VGVLSA H+
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHS 343
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 4/159 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A+ FD M ERD W+ MI G +AL LF + +
Sbjct: 268 TALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVR 327
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T V +L+A A+ G ++ G + + ++ + ++D+ C+ + +
Sbjct: 328 PNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLDEAFSF 387
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ G+ IS N ++ +L AS + + V + S R
Sbjct: 388 VTGMPISPNS----VIWRNLLVASKSSNRIDIVELASRR 422
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F KDV+ TA+V GY V AR+ FD+MPER+ V W+ M+ Y RV+ F+E
Sbjct: 167 LFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEV 226
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q +E +V++LTA A+LGAL G W+ +Y + ++++ AL+DM
Sbjct: 227 LALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDM 286
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC W MI G A++G+ K+L +F QM + KP+E +
Sbjct: 287 YSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTF 346
Query: 172 VGVLSARTH 180
V VL+A TH
Sbjct: 347 VAVLTACTH 355
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V+ A FD + ++D W MI G ++L LF+++ S
Sbjct: 281 TALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTK 340
Query: 80 GDEFTIVSILTARANLGALELGEWI 104
+E T V++LTA + ++ G W+
Sbjct: 341 PNETTFVAVLTACTHAKMVQQGLWL 365
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+G ++F M+ +DV + A+++GY ++D AR + MP R+ V WT +I GY
Sbjct: 167 LGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYA 226
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R R EA+ +FQ + N+ DE T++++L+A A+LG+LELGE I +Y+D + +
Sbjct: 227 RSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 119 AGNALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NA+IDMY K +V TWTT+I GLA G+G +AL MF +M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAG 346
Query: 164 IKPDEVAYVGVLSARTH 180
+KP++V ++ +LSA +H
Sbjct: 347 VKPNDVTFIAILSACSH 363
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+ V A++ Y + A + F+ + ER+ V WTT+I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDR 341
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+ + + ++ T ++IL+A +++G ++LG
Sbjct: 342 MVKAGVKPNDVTFIAILSACSHVGWVDLG 370
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ +S+ ++ G + +V A FDQM ERD + WT+MI G+++ F +A
Sbjct: 149 MFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQA 208
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q + + D TI+S+L A ANLGAL LG WI ++ K K++I N+LIDM
Sbjct: 209 LEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDM 268
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +W +MIVG A++G+ ++AL+ F+ M + +PD V++
Sbjct: 269 YSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSF 328
Query: 172 VGVLSARTHN 181
G L+A +H+
Sbjct: 329 TGALTACSHS 338
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ +ARQ F+QMP+R V W +MI G+ EAL F ++ D + LTA
Sbjct: 275 IRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTA 334
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
++ G ++ G ++ K+ I L+D+Y + +G +
Sbjct: 335 CSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSR----------------AGRLE 378
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL++ + M +KP+EV +L+A RTH
Sbjct: 379 DALNVIANM---PMKPNEVVLGSLLAACRTH 406
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 49/184 (26%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN--LGALEL 100
P V WT+ I + R + EA F +Q + + + T +++L+A + L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 101 GEWIKTYIDKNKVKND-IFAGNALIDMYCKC----------------------------- 130
G I Y+ K + + + G AL+DMY KC
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 131 --------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
V F +WT+MI G G ++AL+ F +M A ++PD V +
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 174 VLSA 177
VL+A
Sbjct: 230 VLAA 233
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V+ Y E++ AR+ F++MP R+ V WT MI G+ RV EA+ LF+E+Q + I
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D T+VS+++A A GAL++G W+ YI+K V D+ AL+DMY KC
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 131 ----TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
VK T W++MI+G A G A+D F QML + PD V ++ VLSA H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAH 306
Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEI-QTSNIMGDEFTIVSIL 89
++ AR F Q+P + W ++I GY +++ +E + LF+++ +T + + FT+ +L
Sbjct: 40 INYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVL 99
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF-------------- 134
A A + A G + +++ K+ + +F +L++ Y KC + F
Sbjct: 100 KACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLV 159
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT MI G A G D+A+++F +M +A I+PD + V V+SA
Sbjct: 160 AWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSA 202
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A+Q F MP +D W++MI G+ ++A+ FQ++ + +
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVT 291
Query: 80 GDEFTIVSILTARANLGALELGE--W-------IKTYIDKNKVKNDIFAGNALIDMYCKC 130
D T +++L+A A+ G + G W I+ ++ K D+ + L++ +
Sbjct: 292 PDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRI 351
Query: 131 TVKF-------TWTTMIVG 142
T TW ++++G
Sbjct: 352 TTTMKIPPNAATWRSLLMG 370
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 111/177 (62%), Gaps = 15/177 (8%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
++A++ Y + A + F+++P RD V WT ++ GY++ N+F++AL F ++ + N+
Sbjct: 247 FSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNV 306
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
++FT+ S+L+A A +GAL+ G + YI+ NK+ ++ G AL+DMY KC
Sbjct: 307 APNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALR 366
Query: 131 -----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
VK +TWT +I GLA+ G+ AL++F ML++ I+P+EV +VGVL+A +H
Sbjct: 367 VFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSH 423
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF + D+ A++ + N V+ ARQ FD+ P +D V WT +I+GY++ + E
Sbjct: 132 QIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGE 191
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALI 124
AL F +++ + D T+ SIL A A +G + G W+ Y++ +V+ D + +AL+
Sbjct: 192 ALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALM 251
Query: 125 DMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC K WT ++ G S AL F ML ++ P++
Sbjct: 252 DMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDF 311
Query: 170 AYVGVLSA 177
VLSA
Sbjct: 312 TLSSVLSA 319
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N +V TA+V Y +D A + F+ MP ++ WT +I+G AL +F
Sbjct: 342 NMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCC 401
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGE 102
+ S I +E T V +L A ++ G +E G+
Sbjct: 402 MLKSGIQPNEVTFVGVLAACSHGGFVEEGK 431
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G L++F +DV++Y ++ G + ++ AR+ FD MP RD V W ++I GY ++
Sbjct: 582 IGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQM 641
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N+ REA++LF E+ + D IVS L+A A G LE G+ I Y K ++ D F
Sbjct: 642 NQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLA 701
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
L+D Y KC FTW MI GLA+ GNG+ +D F +M+ + IK
Sbjct: 702 TGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIK 761
Query: 166 PDEVAYVGVLSARTHN 181
PD V+++ VL +H+
Sbjct: 762 PDGVSFISVLVGCSHS 777
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 103/164 (62%), Gaps = 15/164 (9%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
+ A + FD P+ D V W+ MI G++R+ A+ LF+E+Q + DE T+VS+L+A
Sbjct: 179 EFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSAC 238
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF----------TWT 137
A+LGALELG+W+++Y++K + + NALIDM+ KC +K +WT
Sbjct: 239 ADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWT 298
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
++I GLA+ G G A+ +F +M+ I PD+VA++GVLSA +H+
Sbjct: 299 SVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHS 342
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILTARANLGALELG 101
P D L+ T+I Y + + LF + + + ++FT +L A +G+L LG
Sbjct: 85 PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------------------FTWTTMIVGL 143
+ + + K + D+ N LI MYC C + TW+ MI G
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYC-CLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGF 203
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +A+D+F +M + PDE+ V VLSA
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSA 237
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G +E + KN K V A++ + VD A + F QM R V WT++I G
Sbjct: 246 LGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLA 305
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDI 117
R +A++LF E+ + I D+ + +L+A ++ G ++ G + +++N + +
Sbjct: 306 MHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKV 365
Query: 118 FAGNALIDMYCK 129
++D+ C+
Sbjct: 366 EHYGCMVDLLCR 377
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 20/195 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F N++V+ +T++VSGY + V+ AR FD+MP R+ ++ M+ GY+R F E
Sbjct: 141 QVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSE 200
Query: 66 ALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ LF+E++ + + + +VS+L A +GA E G+WI +Y+++N ++ D+ G
Sbjct: 201 GVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELG 260
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALID Y KC VK TW+ MI+GLAI+GN AL++F +M + K
Sbjct: 261 TALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 320
Query: 166 PDEVAYVGVLSARTH 180
P+EV +VGVL+A H
Sbjct: 321 PNEVTFVGVLTACNH 335
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+G ++F M KDV + A+++GY ++D AR + MP R+ V WT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ R EA+ +FQ + N+ DE T++++L+A A+LG+LELGE I +Y+D + +
Sbjct: 227 KSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 119 AGNALIDMYCK------------CTVK---FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NA+IDMY K C + TWTT+I GLA G+G +AL MF++M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG 346
Query: 164 IKPDEVAYVGVLSARTH 180
++P++V ++ +LSA +H
Sbjct: 347 VRPNDVTFIAILSACSH 363
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+ V A++ Y + A F+ + ER+ V WTT+I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNR 341
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGE 102
+ + + ++ T ++IL+A +++G ++LG+
Sbjct: 342 MVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L F + K S+ +++ G+ VD AR F+++PE+D V W TM++ Y++ + F
Sbjct: 422 ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLF 481
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
E+ +F ++Q+SN+ D+ T++S+L++ A +GAL G W+ YI+KN++ D G AL
Sbjct: 482 NESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTAL 541
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC F WT M+ A+ G +A+D++ +M +KPD
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601
Query: 169 VAYVGVLSARTH 180
V ++ +L+A +H
Sbjct: 602 VTFIALLAACSH 613
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 15/165 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ +T +VSGY+ ++D ARQ FD+M ER V WTTM+ GY++ + E+L LFQ+++
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----- 129
N++ DE +V++L+A +L +LG + +I + D F GNAL+D+Y K
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420
Query: 130 ----------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
C +W +M+ G SG DKA D F+++ I
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDI 465
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 87/192 (45%), Gaps = 48/192 (25%)
Query: 37 QCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
Q F++M RD + W TMI Y+ +REAL LF E+ S ++ DE T+VS+++ A L
Sbjct: 189 QLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK 248
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------------- 131
LE+G+ + YI NK+ N L+DMY KC
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTL 308
Query: 132 ----VK-------------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
VK +WTTM+ G G ++L++F QM ++ PDE
Sbjct: 309 VSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368
Query: 169 VAYVGVLSARTH 180
VA V VLSA H
Sbjct: 369 VALVTVLSACVH 380
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+ +++ ++ +D A Q E + ++W T+++ L+ +E L + + T ++
Sbjct: 71 SQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL 130
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK----- 133
D T ++ A ++LG + I K + N L+ +Y KC +K
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W TMI + G +ALD+F +ML + + PDE+ V ++S
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVS 242
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA++ Y V++A + F Q+ E++ +WT M+ Y + EA+ L+ E++
Sbjct: 534 DAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEME 593
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ D T +++L A ++ G ++ G
Sbjct: 594 ERGVKPDHVTFIALLAACSHGGLVDEG 620
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F + N+DV+ +TA++ GY V+ AR F+ MPER+ + W+ ++ Y RV
Sbjct: 165 MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRV 224
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F+E L LF+ +Q + M +E +VS+LTA A+LGAL G W+ +Y + ++
Sbjct: 225 GDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILA 284
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC W MI G+A++G+ K+L++F++M+ +
Sbjct: 285 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 344
Query: 166 PDEVAYVGVLSARTH 180
P E +V VL+A TH
Sbjct: 345 PTETTFVAVLTACTH 359
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 107/181 (59%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y D A + F++MP R+ V W +I GY++ NR++EAL +FQE+
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
I ++ T+ S LTA A LG+L+ G W+ Y+D++K+ + G AL+DMY KC
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+ WT MI GLA+ G+ +L++FSQM+R+ ++P+ V ++GVLSA
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 180 H 180
H
Sbjct: 419 H 419
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++VS + + VD +R+ F + ++D V WT +I+G LR R EAL F E++
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALIDMYCKC--- 130
+S + DE T+VS+L A A L + G W+ Y++ +V D++ G+AL+DMY KC
Sbjct: 197 SSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 131 --TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +W +I G +AL +F +M+ I+P++ L+A
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD++ LW T++ + ++ + L + ++ ++ D T +L A + L
Sbjct: 61 FDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN- 119
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------TVK---FTWTTMIVGL 143
E +I K + D F N+L+ + C T K +WT +I G
Sbjct: 120 ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL+ F +M + ++ DEV V VL A
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCA 213
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y VD A F+++P +D WT MI+G +L LF ++ S +
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ T + +L+A A+ G ++ G E + I +++ ++ ++D+
Sbjct: 405 PNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 107/181 (59%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y D A + F++MP R+ V W +I GY++ NR++EAL +FQE+
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
I ++ T+ S LTA A LG+L+ G W+ Y+D++K+ + G AL+DMY KC
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+ WT MI GLA+ G+ +L++FSQM+R+ ++P+ V ++GVLSA
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 180 H 180
H
Sbjct: 419 H 419
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++VS + + VD +R+ F + ++D V WT +I+G LR R EAL F E++
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALIDMYCKC--- 130
+S + DE TIVS+L A A L + G W+ Y++ +V D++ G+AL+DMY KC
Sbjct: 197 SSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 131 --TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +W +I G +AL +F +M+ I+P++ L+A
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD++ LW T+I G+ ++ + L + ++ ++ D T +L A + L
Sbjct: 61 FDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN- 119
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------TVK---FTWTTMIVGL 143
E +I K + D F N+L+ + C T K +WT +I G
Sbjct: 120 ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL+ F +M + ++ DEV V VL A
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCA 213
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y VD A F+++P +D WT MI+G +L LF ++ S +
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ T + +L+A A+ G ++ G E + I +++ ++ ++D+
Sbjct: 405 PNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V+S+T ++ GY + +D AR FD MPE++ W MI GY + + E
Sbjct: 380 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYE 439
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF E+Q T+++ DE TIVS+L A A+LGAL+LG W+ ++ + K+ G ALI
Sbjct: 440 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALI 499
Query: 125 DMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC VK +W +I AI+G +AL +F +M P+E+
Sbjct: 500 DMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEI 559
Query: 170 AYVGVLSARTHN 181
+GVLSA H+
Sbjct: 560 TMIGVLSACNHS 571
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F M ++ +S+TA++ GY+ +D A + FDQM E+D + TMID Y+++
Sbjct: 313 MDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKL 372
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
A LF E+ +++ I ++ NL + ++ D KN
Sbjct: 373 GDMCSARKLFDEMPERSVVSWTIMIYG-YSSNGNLDS------ARSLFDAMPEKN----- 420
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
F+W MI G + +AL +F +M S++PDEV V VL A
Sbjct: 421 ------------LFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPA 466
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ +R FD MPE++ W +I+ + R +EAL LF E+ M
Sbjct: 496 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM 555
Query: 80 GDEFTIVSILTARANLGALELGE-WIKT 106
+E T++ +L+A + G +E G+ W K
Sbjct: 556 PNEITMIGVLSACNHSGLVEEGKRWFKA 583
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 107/176 (60%), Gaps = 15/176 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y+ E + AR+ FD++P+RD V WT++I G ++ + +++L LF ++Q S +
Sbjct: 243 ALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEP 302
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
D + S+L+A A+LGAL+ G W++ YI++ ++ DI G AL+DMY KC
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 133 -------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
FTW ++ GLA+ G+G +AL F M+ A I+P+EV ++ +L+A H+
Sbjct: 363 NGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M RD V WT +I GY+R F EA+ LF ++ +++ + T VS+L A
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGR 215
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
+G L +G+ + + K + GNAL+DMY KC +WT++
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL +L++F M + ++PD + VLSA
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +++A F+ +P R+ W ++ G EAL F+ + + I
Sbjct: 343 TALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIR 402
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T ++ILTA + G + G
Sbjct: 403 PNEVTFLAILTACCHSGLVAEG 424
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ T+I Y + A ++ I + + D +T +L A ++ GE +
Sbjct: 73 YNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAV 132
Query: 110 KNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALD 154
K D++ N+L+ Y C V+ +WT +I G +G D+A++
Sbjct: 133 KMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAIN 192
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F L+ + P+ +V VL A
Sbjct: 193 LF---LKMDVVPNVATFVSVLVA 212
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 15/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A FD+MPE D W+TM+ GY + + EAL LF+E+Q N+ D FT+ S++
Sbjct: 158 MDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGV 217
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF----------TW 136
+LGAL+LG+W+ +Y+DK VK D+ G AL+ MY KC +K W
Sbjct: 218 CGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAW 277
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+TMI G AI G+G+KAL +F M R+ P+ V + VLSA +H+
Sbjct: 278 STMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHS 322
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V Y +D A + F M ERD W+TMI GY +AL LF ++
Sbjct: 242 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCK 129
S + + T S+L+A ++ G +E G I +T + K+ I ++D++C+
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCR 357
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+DV+ + ++ GY V+ F++MPER+ W +I GY F E
Sbjct: 317 KLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 376
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L F+ + S++ ++ T+V++L+A A LGAL+LG+W+ Y + + +K +++ GNAL+
Sbjct: 377 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 436
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC + +W T+I GLA+ G AL++F QM A KPD +
Sbjct: 437 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGI 496
Query: 170 AYVGVLSARTH 180
++G+L A TH
Sbjct: 497 TFIGILCACTH 507
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +IF M ++V+++T++++GYI + AR+ FD PERD VLW M+ GY+
Sbjct: 250 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 309
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
EA LF E+ ++M ++L A G +E E + + + +
Sbjct: 310 GDMVEARKLFXEMPNRDVM----FWNTVLKGYATNGNVEALEGLFEEMPERNI------- 358
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
F+W +I G A +G + L F +ML S + P++ V VLSA
Sbjct: 359 -------------FSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSA 403
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
ARQ FDQ+P+ + LW +M GY + +RE + LF +++ +I + FT +L +
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 211
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY-------------CKCTVK--FTWTTM 139
+ AL GE + ++ K + + F G LIDMY C+ + WT+M
Sbjct: 212 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 271
Query: 140 IVGLAISGNGDKALDMF 156
I G +S + A +F
Sbjct: 272 INGYILSADLVSARRLF 288
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 29/162 (17%)
Query: 26 YINREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
Y+ +D+ +C F M +D + W T+I G +R +AL LF +++ +
Sbjct: 430 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNA 489
Query: 77 NIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
D T + IL A ++G +E G + ++ D + I ++DM
Sbjct: 490 GQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDM--------- 540
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A +M ++ D V + G+L A
Sbjct: 541 -------LARAGRLEQAXAFVRKM---PVEADGVIWAGLLGA 572
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ ++V ++T ++SG + ++D AR+ F+QMP ++ V WT MIDGY++ + E
Sbjct: 179 KVFDKMRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIE 238
Query: 66 ALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A LF+ + Q N+ +E+T+VS++ A +G+L+LG + + KN + + F G ALI
Sbjct: 239 AFNLFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALI 298
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC TW TMI L + G D+AL +F +M +A+ PD +
Sbjct: 299 DMYSKCGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAI 358
Query: 170 AYVGVLSA 177
+VGVLSA
Sbjct: 359 TFVGVLSA 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FDQ+ D W MI + + AL LF+ + D+FT ++ A AL
Sbjct: 80 FDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMASSAL 139
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------VK--FTWTTMIVGL 143
+LG K D++ N ++++Y KC V+ F WTT+I GL
Sbjct: 140 DLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGL 199
Query: 144 AISGNGDKALDMFSQM 159
G D A ++F QM
Sbjct: 200 VACGKLDTARELFEQM 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF LE F TA++ Y +D AR FD M R W TMI L V+
Sbjct: 286 GFELEPFLG---------TALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITS-LGVH 335
Query: 62 RFR-EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
+R EAL+LF E++ +N + D T V +L+A + LEL +
Sbjct: 336 GYRDEALSLFDEMEKANEVPDAITFVGVLSACVYMNDLELAQ 377
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 107/176 (60%), Gaps = 15/176 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y+ E + AR+ FD++P+RD V WT++I G ++ + +++L LF ++Q S +
Sbjct: 243 ALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEP 302
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
D + S+L+A A+LGAL+ G W++ YI++ ++ DI G AL+DMY KC
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 133 -------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
FTW ++ GLA+ G+G +AL F M+ A I+P+EV ++ +L+A H+
Sbjct: 363 NGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M RD V WT +I GY+R F EA+ LF ++ +++ + T VS+L A
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGR 215
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
+G L +G+ + + K + GNAL+DMY KC +WT++
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL +L++F M + ++PD + VLSA
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +++A F+ +P R+ W ++ G EAL F+ + + I
Sbjct: 343 TALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIR 402
Query: 80 GDEFTIVSILTARANLGALELGE 102
+E T ++ILTA + G + G
Sbjct: 403 PNEVTFLAILTACCHSGLVAEGR 425
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ T+I Y + A ++ I + + D +T +L A ++ GE +
Sbjct: 73 YNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAV 132
Query: 110 KNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALD 154
K D++ N+L+ Y C V+ +WT +I G +G D+A++
Sbjct: 133 KMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAIN 192
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F L+ + P+ +V VL A
Sbjct: 193 LF---LKMDVVPNVATFVSVLVA 212
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V+S+T ++ GY + +D AR FD MPE++ W MI GY + + E
Sbjct: 206 KLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYE 265
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF E+Q T+++ DE TIVS+L A A+LGAL+LG W+ ++ + K+ G ALI
Sbjct: 266 ALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALI 325
Query: 125 DMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC VK +W +I AI+G +AL +F +M P+E+
Sbjct: 326 DMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEI 385
Query: 170 AYVGVLSARTHN 181
+GVLSA H+
Sbjct: 386 TMIGVLSACNHS 397
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +S+TA++ GY+ +D A + FDQM E+D + TMID Y+++
Sbjct: 144 KLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCS 203
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF E+ +++ I ++ NL + ++ D KN
Sbjct: 204 ARKLFDEMPERSVVSWTIMIYG-YSSNGNLDS------ARSLFDAMPEKN---------- 246
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
F+W MI G + +AL +F +M S++PDEV V VL A
Sbjct: 247 -------LFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPA 292
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ +R FD MPE++ W +I+ + R +EAL LF E+ M
Sbjct: 322 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFM 381
Query: 80 GDEFTIVSILTARANLGALELGE-WIKT 106
+E T++ +L+A + G +E G+ W K
Sbjct: 382 PNEITMIGVLSACNHSGLVEEGKRWFKA 409
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y E+V +AR FD M +++ W+ MI GY RV EAL LF+E+Q +++
Sbjct: 167 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 226
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+VS+++A A GAL+LG W+ +ID+ + D+ ALIDMY KC +
Sbjct: 227 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 286
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVGLAI G + AL +FS+ML ++P+ V ++GVLSA H+
Sbjct: 287 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 344
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A+ FD M ERD W+ MI G AL LF + +
Sbjct: 269 TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVR 328
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A A+ G + G + + + +K + ++D++C+ ++ +
Sbjct: 329 PNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSF 388
Query: 140 IVGLAISGN 148
+ G+AI N
Sbjct: 389 VTGMAIPPN 397
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREA----LTLFQEIQTSNIMGDEFTIVSILT 90
AR FDQ+PE + ++I A L + ++ + + + FT+ L
Sbjct: 77 ARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 136
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV---------KF 134
A + + AL G + + + ++ + L+++Y KC TV
Sbjct: 137 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 196
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G + G ++AL +F +M A + PDEV V V+SA
Sbjct: 197 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISA 239
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
T +++ Y E+V +AR FD M +++ W+ MI GY RV EAL LF+E+Q +++
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
DE T+VS+++A A GAL+LG W+ +ID+ + D+ ALIDMY KC +
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 289
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W+ MIVGLAI G + AL +FS+ML ++P+ V ++GVLSA H+
Sbjct: 290 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 347
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A+ FD M ERD W+ MI G AL LF + +
Sbjct: 272 TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVR 331
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A A+ G + G + + + +K + ++D++C+ ++ +
Sbjct: 332 PNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAYSF 391
Query: 140 IVGLAISGN 148
+ G+AI N
Sbjct: 392 VTGMAIPPN 400
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFR----EALTLFQEIQTSNIMGDEFTIVSILT 90
AR FDQ+PE + ++I L + ++ + + + FT+ L
Sbjct: 80 ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV---------KF 134
A + + AL G + + + ++ + L+++Y KC TV
Sbjct: 140 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 199
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G + G ++AL +F +M A + PDEV V V+SA
Sbjct: 200 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISA 242
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 107/189 (56%), Gaps = 17/189 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++++S+ A+V GY VD AR+ FD MPE+D V WT M+ GY R R +
Sbjct: 245 KMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQ 304
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIF-AGNAL 123
AL LF+ +Q+ ++ +E T+VS+ +A A L AL+ G W +I K V +D F G AL
Sbjct: 305 ALELFRTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAAL 364
Query: 124 IDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC K W +I GLA +G+ + +D+F QM + KPD
Sbjct: 365 IDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDS 424
Query: 169 VAYVGVLSA 177
V +V VL+A
Sbjct: 425 VTFVSVLAA 433
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF---- 70
DV+S+ +V+GY ++ AR+ FD MP R+ W+ M+ Y + A +F
Sbjct: 159 DVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP 218
Query: 71 ---QEIQTSNIMGDEFTIVSILT-ARA---NLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+ + T N M +L AR + A L W + V D+ L
Sbjct: 219 AAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSW-NAMVRGYAVNGDVDGAREL 277
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
D + V +WT M+ G A +G +AL++F M ++P+EV V V SA
Sbjct: 278 FDAMPEKDV-VSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSA 330
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + D+A + F + ++ W +I G R + +F++++ S+
Sbjct: 363 ALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKP 422
Query: 81 DEFTIVSILTARANLGALELG 101
D T VS+L A A G ++ G
Sbjct: 423 DSVTFVSVLAACARAGLVDEG 443
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 110/186 (59%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V ++T +++G++ ++D AR+ F+QMP ++ V WT +IDGY++ + EA
Sbjct: 179 VFDKMCVRNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEA 238
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ +Q N+ +E+T+VS++ A +G+L+LG + + KN + + F G ALIDM
Sbjct: 239 FDLFERMQADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDM 298
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TW TMI L + G D+AL +F +M +A+ PD + +
Sbjct: 299 YSKCGNLDDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITF 358
Query: 172 VGVLSA 177
VGVLSA
Sbjct: 359 VGVLSA 364
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FDQ+ D W MI Y + A LF+ + D+FT ++ A AL
Sbjct: 79 FDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMAYNAL 138
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGL 143
++G K D++ N ++++Y KC V+ F WTT+I G
Sbjct: 139 DVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTVIAGF 198
Query: 144 AISGNGDKALDMFSQMLRASI 164
G D A ++F QM ++
Sbjct: 199 VACGKLDTARELFEQMPSKNV 219
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF LE F TA++ Y +D AR FD M R W TMI L V+
Sbjct: 284 GFELEPFLG---------TALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITS-LGVH 333
Query: 62 RFR-EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
+R EAL++F+E++ +N + D T V +L+A + LEL +
Sbjct: 334 GYRDEALSIFEEMEKANEVPDAITFVGVLSACVYMNDLELAQ 375
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M ++DVIS+T+++ Y ++ A + FD +P +D V WT M+ GY +
Sbjct: 191 LGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQN 250
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIF 118
R REAL +F+ +Q + + DE T+V +++A A LGA + W++ +++ +++
Sbjct: 251 ARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVV 310
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G+ALIDMY KC +V+ +++++MIVG A+ G A+++F +ML+
Sbjct: 311 VGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTE 370
Query: 164 IKPDEVAYVGVLSARTH 180
IKP+ V ++GVL+A +H
Sbjct: 371 IKPNRVTFIGVLTACSH 387
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
R F Q+ + LWT +I GY F E++ L+ ++ I FT ++L A +
Sbjct: 92 PRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSA 151
Query: 95 LGALELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT- 135
+ LG + T I +D++ GN LIDMY KC + +T
Sbjct: 152 ALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTS 211
Query: 136 ----------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
WT M+ G A + +AL++F +M A +K D
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271
Query: 168 EVAYVGVLSA 177
EV VGV+SA
Sbjct: 272 EVTLVGVISA 281
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
FG N V+ +A++ Y V+ A + F++M ER+ +++MI G+ A+
Sbjct: 303 FGPTSN--VVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAM 360
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
LF E+ + I + T + +LTA ++ G +E G+ +
Sbjct: 361 ELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQL 397
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+DV+ + ++ GY V+ F++MPER+ W +I GY F E
Sbjct: 254 KLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 313
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L F+ + S++ ++ T+V++L+A A LGAL+LG+W+ Y + + +K +++ GNAL+
Sbjct: 314 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 373
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC + +W T+I GLA+ G AL++F QM A KPD +
Sbjct: 374 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGI 433
Query: 170 AYVGVLSARTH 180
++G+L A TH
Sbjct: 434 TFIGILCACTH 444
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +IF M ++V+++T++++GYI + AR+ FD PERD VLW M+ GY+
Sbjct: 187 VGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEG 246
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
EA LF E+ ++M ++L A G +E E + + + +
Sbjct: 247 GDMVEARKLFHEMPNRDVM----FWNTVLKGYATNGNVEALEGLFEEMPERNI------- 295
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
F+W +I G A +G + L F +ML S + P++ V VLSA
Sbjct: 296 -------------FSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSA 340
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
ARQ FDQ+P+ + LW +M GY + +RE + LF +++ +I + FT +L +
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMY-------------CKCTVK--FTWTTM 139
+ AL GE + ++ K + + F G LIDMY C+ + WT+M
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 140 IVGLAISGNGDKALDMF 156
I G +S + A +F
Sbjct: 209 INGYILSADLVSARRLF 225
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 26 YINREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
Y+ +D+ +C F M +D + W T+I G +R +AL LF +++ +
Sbjct: 367 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNA 426
Query: 77 NIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
D T + IL A ++G +E G + ++ D + I ++DM
Sbjct: 427 GQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDM--------- 477
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A+ +M ++ D V + G+L A
Sbjct: 478 -------LARAGRLEQAMAFVRKM---PVEADGVIWAGLLGA 509
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 115/192 (59%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+DVIS+T ++S Y+ ++ A + FD +P +D V WT M+ G+ + + RE
Sbjct: 203 KVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPRE 262
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNAL 123
A+ F+++Q + DE T++ +++A A LGA + +WI+ +K++ K+ + G+AL
Sbjct: 263 AIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSAL 322
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC +++++MI+G A+ G A+ +F +M++ IKP+
Sbjct: 323 IDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNR 382
Query: 169 VAYVGVLSARTH 180
V ++GVL+A +H
Sbjct: 383 VTFIGVLTACSH 394
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 47/186 (25%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+Q+ + L+ +I GYL R +E+ + ++ ++ FT ++ A +
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162
Query: 99 ELGEWIK-TYIDKNKVKNDIFAGNALIDMYCKC--------------------------- 130
LG I I D+ GN++IDMY KC
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISA 222
Query: 131 -----------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
VK WT M+ G A + +A+ F +M ++ DE+
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282
Query: 172 VGVLSA 177
+GV+SA
Sbjct: 283 IGVISA 288
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
V+ +A++ Y V A + F M ER+ +++MI G+ R +A+ LF E
Sbjct: 313 KHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDE 372
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
+ + I + T + +LTA ++ G +E G I ++K
Sbjct: 373 MVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+DV+ + ++ GY V+ F++MPER+ W +I GY F E
Sbjct: 96 KLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 155
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L F+ + S++ ++ T+V++L+A A LGAL+LG+W+ Y + + +K +++ GNAL+
Sbjct: 156 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 215
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC + +W T+I GLA+ G AL++F QM A KPD +
Sbjct: 216 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGI 275
Query: 170 AYVGVLSARTH 180
++G+L A TH
Sbjct: 276 TFIGILCACTH 286
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M ++V+++T++++GYI + AR+ FD PERD VLW M+ GY+ E
Sbjct: 34 EIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVE 93
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF E+ ++M ++L A G +E E + + + +
Sbjct: 94 ARKLFHEMPNRDVM----FWNTVLKGYATNGNVEALEGLFEEMPERNI------------ 137
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
F+W +I G A +G + L F +ML S + P++ V VLSA
Sbjct: 138 --------FSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSA 182
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 26 YINREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
Y+ +D+ +C F M +D + W T+I G +R +AL LF +++ +
Sbjct: 209 YVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNA 268
Query: 77 NIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
D T + IL A ++G +E G + ++ D + I ++DM
Sbjct: 269 GQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDM--------- 319
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A+ +M ++ D V + G+L A
Sbjct: 320 -------LARAGRLEQAMAFVRKM---PVEADGVIWAGLLGA 351
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 19/186 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D T+++S Y + VD+AR F MPER+ + W+ MI+GY+R +++EAL LF+E+Q
Sbjct: 98 DPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQ 157
Query: 75 ---TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC- 130
+++ +EFT+ +L A LGALE G+W YIDK + D+ G ALIDMY KC
Sbjct: 158 MLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCG 217
Query: 131 -----TVKFT----------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
T F+ W+ MI GLA+ G ++ + +FS+M+ ++P+ V ++ V
Sbjct: 218 SVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVF 277
Query: 176 SARTHN 181
A H
Sbjct: 278 CACVHG 283
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + D +S+ +++ GY+ ++DIA F +M E++ + WTTMI GY++ + +EA
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q S++ D ++ + L+A A LGALE G+WI +Y++K +++ D G LIDM
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDM 291
Query: 127 YCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +V+ WT +I G A G+G +A+ F +M + IKP+ +
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQ-AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 350
Query: 171 YVGVLSA 177
+ VL+A
Sbjct: 351 FTAVLTA 357
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ FD D LW MI G+ + +L L+Q + S+ + +T S+L A +N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-------------------------- 128
L A E I I K +ND++A N+LI+ Y
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 129 -KCTVK-------------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
K VK +WTTMI G + +AL +F +M + ++PD
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 169 VAYVGVLSA 177
V+ LSA
Sbjct: 248 VSLANALSA 256
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++ Y +++ A + F + ++ WT +I GY REA++ F E+Q
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVK 133
I + T ++LTA + G +E G+ I ++++ +K I ++D+
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDL------- 393
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A +M +KP+ V + +L A R H
Sbjct: 394 ---------LGRAGLLDEAKRFIQEM---PLKPNAVIWGALLKACRIHK 430
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 107/183 (58%), Gaps = 15/183 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KD +S+ +++GY+ + +D+A F Q+ ++D VLW M+ GY++ R +AL LF+++
Sbjct: 254 KDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKM 313
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ DE T+V IL A A+L L+ G + +I++N +K DIF ALIDMY KC
Sbjct: 314 DNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGSP 373
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
FTWT +I GLA +G G+ AL++F QM I+P+E +V L++
Sbjct: 374 EEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGIQPNEATFVSALTSC 433
Query: 179 THN 181
H+
Sbjct: 434 RHS 436
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG-YLRVNRFREALTLFQ 71
+ D+ A++ Y + +Q++ AR FD+M ERD W T + Y N + + LF+
Sbjct: 116 DSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDLMDLFK 175
Query: 72 EIQTSNIMGDEFTIVSILTARANLG---ALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+ + + D+ T+V + +A A +LE G + + K + + + NAL++MY
Sbjct: 176 RLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLVSMLNVSNALLNMYT 235
Query: 129 K 129
K
Sbjct: 236 K 236
Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D+ TA++ Y + A F +M +D WT +I+G AL LF+++
Sbjct: 355 QDIFVKTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQM 414
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG 101
+ I +E T VS LT+ + G ++ G
Sbjct: 415 EEQGIQPNEATFVSALTSCRHSGLVKEG 442
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 24/197 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ +++EA
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK V+ DI G
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238
Query: 122 ALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA-S 163
ALIDMY KC VK ++ MI LA+ G D+ +FS+M + +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVK-AYSAMICCLAMYGLTDECFQLFSEMTTSDN 297
Query: 164 IKPDEVAYVGVLSARTH 180
I P+ V +VG+L A H
Sbjct: 298 INPNSVTFVGILGACVH 314
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D+ S+T +++ Y N V AR+ FD+MPER + ++ MI Y+R NRFREA
Sbjct: 145 VFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREA 204
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALID 125
L LF+E+ + I + ++S+L A ANLGAL++G W+ +Y+ ++K D ALID
Sbjct: 205 LDLFRELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALID 264
Query: 126 MYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC +++ WT M+ GLA+ G G++ ++ F +M+ + +KP+ V
Sbjct: 265 MFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVT 324
Query: 171 YVGVLSARTHN 181
+V +LS +H+
Sbjct: 325 FVALLSGCSHS 335
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +I+ + +K +I TA++SGY V AR FDQM ERD V W+ MI GY
Sbjct: 273 MDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES 332
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++ +EAL LF E+ + D+ T++S+++A +++GAL WI TY+D++ +
Sbjct: 333 DQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVN 392
Query: 121 NALIDMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC VK +W++MI A+ GN D A+ +F +M +I+
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIE 452
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++GVL A H
Sbjct: 453 PNGVTFIGVLYACGH 467
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 50/226 (22%)
Query: 5 LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
LEI G D T +++ Y + ++ AR FD+M D V W +IDGY +
Sbjct: 141 LEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQN 200
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +AL LF+++++S++ D + ++L+A + G L G I ++ N D
Sbjct: 201 GHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQ 260
Query: 121 NALIDMYCKC-----------------------------------TVKF----------- 134
ALI+MY C +F
Sbjct: 261 TALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLV 320
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ MI G A S +AL +F +ML+ PD++ + V+SA +H
Sbjct: 321 CWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ F+ MP ++ + W++MI+ + A+ LF+ ++ NI + T + +L A +
Sbjct: 408 AREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGH 467
Query: 95 LGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKC-----------TVKFTWTTMIVG 142
G +E GE + + I+++ + ++D+YC+ T+ F +I G
Sbjct: 468 AGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWG 527
Query: 143 LAISG---NGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+S +G+ L F+ ++PD + VLS
Sbjct: 528 SLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLS 564
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGA 97
F Q+P ++ R + + + L+ ++ N D F+ S+L A + + A
Sbjct: 77 FSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSA 136
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVG 142
G I K +D F LI MY C W +I G
Sbjct: 137 FNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDG 196
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+G+ D AL +F M + +KPD V VLSA H
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGH 234
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 14/188 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
I T +DV+ T +V Y V+IAR FD MPERD V W MI Y + +EA
Sbjct: 136 IIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEA 195
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L ++ ++ N+ D FT+V +L++ +++GAL +G + + + ++F GNALIDM
Sbjct: 196 LRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDM 255
Query: 127 YCKCTV--------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
Y KC FTW +MIVG + G GD+A+ F+QML A ++P+ +A++
Sbjct: 256 YAKCGSLDGALEVFNGMPRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFL 315
Query: 173 GVLSARTH 180
G+L +H
Sbjct: 316 GLLCGCSH 323
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F + N+DV+ +TA++ GY V+ AR F+ MPER+ + W+ ++ Y RV
Sbjct: 437 MGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRV 496
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F+E L LF+ +Q + M +E +VS+LTA A+LGAL G W+ +Y + ++
Sbjct: 497 GDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILA 556
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC W MI G+A++G+ K+L++F++M+ +
Sbjct: 557 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 616
Query: 166 PDEVAYVGVLSARTH 180
P E +V VL+A TH
Sbjct: 617 PTETTFVAVLTACTH 631
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 24/197 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ +++EA
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK V+ DI G
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238
Query: 122 ALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA-S 163
ALIDMY KC VK ++ MI LA+ G D+ +FS+M + +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVK-AYSAMICCLAMYGLTDECFQLFSEMTTSDN 297
Query: 164 IKPDEVAYVGVLSARTH 180
I P+ V +VG+L A H
Sbjct: 298 INPNSVTFVGILGACVH 314
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 7 IFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M + DV+SY A++ Y+N +V +AR+ F++MP RD W T+I G + R E
Sbjct: 153 VFEEMPSAPDVVSYNALMHAYVNAGRVGVAREVFEEMPVRDATSWGTVIAGCAKAGRLEE 212
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF ++ D +V++L+ A LGAL+ G+ + YI ++ ++F L+D
Sbjct: 213 AVLLFDRMREEGFRPDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTGLVD 272
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC FTW +IVGLA+ G+G AL+ F+QML I+ D V
Sbjct: 273 LYAKCGCVEEAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQMLADGIQSDGVT 332
Query: 171 YVGVLSARTHN 181
++GVL A +HN
Sbjct: 333 FLGVLIACSHN 343
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F N+D+ S+ ++SGY ++D ARQ FD+MPE+D V WTTMI G L+V F E
Sbjct: 158 KVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFME 217
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F + + +E+T+ S L A ANL AL+ G W+ YI KN ++ + LID
Sbjct: 218 ALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLID 277
Query: 126 MYCKC-TVKF----------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC ++F W MI G A+ G +A+++F QM + P++
Sbjct: 278 MYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNK 337
Query: 169 VAYVGVLSARTH 180
V +V +L+A +H
Sbjct: 338 VTFVALLNACSH 349
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGY-LRVNRFREALTLFQE-IQTSNIMGDEFTIV-SI 88
+ A FD P+ D L+ T+I ++ T F+ I+ ++ ++++ +
Sbjct: 50 ISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAF 109
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------K 133
+ +G LE GE ++ + K ++N++F NALI MY
Sbjct: 110 KGCGSGVGVLE-GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDM 168
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM 159
++W M+ G A G D+A +F +M
Sbjct: 169 YSWNIMLSGYARLGKMDEARQLFDEM 194
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 72/161 (44%), Gaps = 22/161 (13%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
++ Y +++ A + F+ P +R W MI G+ + +EA+ +F++++
Sbjct: 273 AGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEK 332
Query: 78 IMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTW 136
+ ++ T V++L A ++ +E G + ++ +VK ++ L+D+
Sbjct: 333 VSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDL---------- 382
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G +A ++ S M + PD + +LSA
Sbjct: 383 ------LGRAGRLKEAEEIISSM---HLTPDVAIWGALLSA 414
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 46/227 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG---- 56
+G EIF M +D+ ++ +++SGY+ ++ AR FD+MP RD V W MIDG
Sbjct: 240 LGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARI 299
Query: 57 ---------------------------YLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
YLR ++ + L F + + + DE ++VS+L
Sbjct: 300 KDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVL 359
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
TA A L L+ G+W+ +Y+ N +K D+ AL+ MY KC
Sbjct: 360 TACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVV 419
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W +MI+G I G+GDKAL+MF +M + P++ ++ VLSA +H+
Sbjct: 420 SWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHS 466
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D++ TA+++ Y +D+AR+ FD+MPE+ V W +MI GY +AL +F+E+
Sbjct: 385 PDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREM 444
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW 103
+ M ++ T +S+L+A ++ G + G W
Sbjct: 445 EKGGPMPNDATFMSVLSACSHSGMVWNGWW 474
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGA 97
++ + E D + T++ ++ VN AL + E + ++ + +T + A++G+
Sbjct: 114 YNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVCADIGS 173
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVG 142
L G+ + + K + D+F N+ I Y C +W +MI G
Sbjct: 174 LREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDG 233
Query: 143 LAISGNGDKALDMFSQMLRASI 164
+G A ++F +M I
Sbjct: 234 YVKNGELGLAREIFDEMYERDI 255
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 17/180 (9%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S+ A+VSG+I VD AR+ FD MPERD W+TMI GY + ++ R AL LF ++ S
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TV 132
I +E T+VS+ +A A LG L+ G W YI + + ALIDMY KC +
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSAL 720
Query: 133 KF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+F W +I GLA G+ LD+FS M R +IKP+ + ++GVLSA H
Sbjct: 721 QFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCH 780
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 46/223 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +++S+ +++GY VD+AR+ F+++P++D + W TMIDGY+ +
Sbjct: 452 VGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILM 511
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
NR EAL +++ + S + +E +V++++A L A+ G + + K F
Sbjct: 512 NRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQ 571
Query: 121 NALIDMYCKCTVK----------------------------------------------F 134
+I Y C + F
Sbjct: 572 TTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVF 631
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+TMI G A + AL++F +M+ + IKP+EV V V SA
Sbjct: 632 SWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + IS +V GY Q+D AR+ FD MP++ V +TTMI G ++ FREA
Sbjct: 326 LFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREA 385
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+++++ ++ ++ T+V+++ A ++ G + I K V+ + L+
Sbjct: 386 LEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRA 445
Query: 127 YCKCT--------------VKF-TWTTMIVGLAISGNGDKALDMFSQM 159
YC C+ V +W M+ G A +G D A ++F ++
Sbjct: 446 YCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERV 493
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 17/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDY--VLWTTMIDGYLRVNRFREALTLFQE 72
D S ++ Y+N + ++ AR+ FD MP+RD V W MI Y++ NR EA LF
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ N++ D+F S+L+A LGALE G+WI YI+K+ ++ D +IDMYCKC
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI GLA+ G G+ A+++F +M R + PD + +V VLSA
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307
Query: 178 RTHN 181
H+
Sbjct: 308 CAHS 311
Score = 43.5 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y ++ A + F+++P++ W MI G + A+ LF+E++ +
Sbjct: 236 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 295
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYI 108
D T V++L+A A+ G +E G+ Y+
Sbjct: 296 PDGITFVNVLSACAHSGLVEEGKHYFQYM 324
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++VI +TA++ Y+ +D AR+ FD+MP RD V W+TMI GY R E+L LF+ +
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ +N +E T+V +L+A A LG+ ELGE I +YI+ + + G+ALIDMY KC
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V W +MI GLA++G + A+ ++ +M+ ++P+E+ ++ +L+A
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 179 TH 180
TH
Sbjct: 422 TH 423
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 91/185 (49%), Gaps = 16/185 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M KD I +++GY V+ AR+ FD MP + W +MI Y F+EAL
Sbjct: 136 FEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEAL 195
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
TLF ++ + TI ++ + A G LE G K ++ + ++N + AL++MY
Sbjct: 196 TLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMY 254
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC W+TMI G + +G ++L++F +M + KP+EV V
Sbjct: 255 VKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLV 314
Query: 173 GVLSA 177
GVLSA
Sbjct: 315 GVLSA 319
Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
+A++ Y V AR F +M ++ + W +MI G L +N F E A+ L+ E+ +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGV 407
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCK 129
+E T +++LTA + G ++ G + KNK + ++D+ CK
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCK 460
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 109/182 (59%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++VI +TA++ Y+ +D AR+ FD+MP RD V W+TMI GY R E+L LF+ +
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ +N +E T+V +L+A A LG+ ELGE I +YI+ + + G+ALIDMY KC
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V W +MI GLA++G + A+ ++ +M+ ++P+E+ ++ +L+A
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 179 TH 180
TH
Sbjct: 422 TH 423
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M KD I ++ GY V+ AR+ FD MP + W +MI Y F+EAL
Sbjct: 136 FEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEAL 195
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
TLF ++ + TI ++ + A G LE G K ++ + ++N + AL++MY
Sbjct: 196 TLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMY 254
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC W+TMI G + +G ++L++F +M + KP+EV V
Sbjct: 255 VKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLV 314
Query: 173 GVLSA 177
GVLSA
Sbjct: 315 GVLSA 319
Score = 44.7 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
+A++ Y V AR F +M ++ + W +MI G L +N F E A+ L+ E+ +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGV 407
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCK 129
+E T +++LTA + G ++ G + KNK + ++D+ CK
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCK 460
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+ ++ ++ GY +++A F+QMP +D + WTTMI+GY R R+REA+ +F
Sbjct: 968 MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVF 1027
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ I+ DE T+ ++++A A+LG LE+G+ + Y +N D++ G+AL+DMY KC
Sbjct: 1028 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKC 1087
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 1088 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVF 1147
Query: 176 SARTH 180
+A TH
Sbjct: 1148 TACTH 1152
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 14 KDVISYTA----IVSGYINREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRV 60
K+V YT ++ YI VD+ +C F +P+++ W ++I+G
Sbjct: 1059 KEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAH 1118
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFA 119
+EAL +F +++ ++ + T VS+ TA + G +E G I ++ ID + +++
Sbjct: 1119 GFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEH 1178
Query: 120 GNALIDMYCKCTVKFTWTTMIVGLAISGNG 149
++ ++ K + + +I + N
Sbjct: 1179 YGCMVHLFSKAGLIYEALELIGSMEFEPNA 1208
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 16/194 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L FG +K KD++S+ IV+G +++ AR F QMP RD V W +++ GY
Sbjct: 219 LALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGD 278
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
F L ++ ++ D T++S+++A GAL+ G W ++ + ++K D F G+A
Sbjct: 279 FASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSA 338
Query: 123 LIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMYCKC + F WTTMI GLA G G KAL++FS+M + + PD
Sbjct: 339 LIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPD 397
Query: 168 EVAYVGVLSARTHN 181
+V +V VLSA +H+
Sbjct: 398 DVTFVSVLSACSHS 411
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
FG ++N ++ Y+ V +A Q F++MP D V + MI GY + EA+
Sbjct: 97 FGYLQN-------TLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAM 149
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALID 125
LF E+ + DEFTI+ +L + LG ++ G+ + ++++ K + +++ GNAL+D
Sbjct: 150 RLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLD 209
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQM 159
MY KC +K +W ++ G A G ++A F QM
Sbjct: 210 MYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 24 SGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82
S + + +D+A F+ P + ++ T+I + + + E+ L+ + +S D+
Sbjct: 8 SAVSHPDNLDLAITLFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPDK 66
Query: 83 FTIVSILTA--------RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
T++ +L A + + A+ G + Y+ +K ++ N L+ + + K
Sbjct: 67 QTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIK--VYLENGLVRLAHQVFEKM 124
Query: 135 ------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
++ MIVG A G G +A+ +F +M+ ++PDE +G+L
Sbjct: 125 PSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLL 171
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++D+ S+ ++ GY+ ++ A++ FD+M ERD V WTT+I GY++V F+EA
Sbjct: 174 VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEA 233
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + +EFT+ S L A ANL AL+ G WI YIDK+++K + +L+DM
Sbjct: 234 LDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDM 293
Query: 127 YCKC-TVKF----------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC + F W MI G A+ G +A+D+F QM + P++V
Sbjct: 294 YAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKV 353
Query: 170 AYVGVLSARTH 180
+V +L+A +H
Sbjct: 354 TFVALLNACSH 364
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRV-----NRFREALTLFQEIQTSNIMGDEFTIVSIL 89
A Q FDQ+P+ D ++ TMI + + N R L++ ++ S + + +T V +
Sbjct: 68 AHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSM---VRVSGFLPNRYTFVFVF 124
Query: 90 TARAN-LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK--------------- 133
A N LG LE GE I+ + K +++++F NA+I MY +
Sbjct: 125 KACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDL 183
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM 159
++W MI G SG +A +MF +M
Sbjct: 184 YSWNIMIGGYVGSGEIGRAKEMFDEM 209
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYI 108
W MI GY + +EA+ LF++++ + ++ T V++L A ++ +E G + K+
Sbjct: 320 WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMA 379
Query: 109 DKNKVKNDIFAGNALIDM 126
++ +I ++D+
Sbjct: 380 SSYGIEPEIEHYGCMVDL 397
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F KD +S+ I++GY ++++A F+Q+P RD V W ++I GY + +
Sbjct: 285 KVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVT 344
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
LF + N+ D+ TIV++++A A +GAL+ G WI K K + F+G+ALID
Sbjct: 345 VKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALID 404
Query: 126 MYCKCT------VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC V F TWTTMI G A G G+KAL++FS M +A KP++V
Sbjct: 405 MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVT 463
Query: 171 YVGVLSARTHN 181
+V VL+A +H+
Sbjct: 464 FVSVLAACSHS 474
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 47/217 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+FG + ++ + +++ Y++ + ARQ FD+M +R+ V + TMI G+ +V
Sbjct: 155 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 213
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++++ + D+FT++ +L LG +LG+ + I+K+ +++ NAL+DM
Sbjct: 214 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 273
Query: 127 YCKCT-VKF--------------TWTTMIVGLAISGNGDKALDMFSQ------------- 158
Y KC +K +W T+I G A G + A D+F+Q
Sbjct: 274 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 333
Query: 159 ------------------MLRASIKPDEVAYVGVLSA 177
M ++KPD+V V ++SA
Sbjct: 334 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISA 370
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 24/184 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYI------NREQVDIARQCFDQM-PERDYVLWTTMIDGYL 58
+I G M +++ T +S + + E +++A F+ P + ++ TMI G+
Sbjct: 49 QILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFP 108
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSIL--------TARANLGALELG-----EWIK 105
N +A T+++ + + D T + +L + + AL G E+++
Sbjct: 109 FSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLR 166
Query: 106 TYIDKNKVKNDIF-AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+ K V N F L D V ++ TMI+G A GN L++F M +
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNV-VSYNTMILGFAKVGNILGILELFHDMRSHGL 225
Query: 165 KPDE 168
+PD+
Sbjct: 226 EPDD 229
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F KD +S+ I++GY ++++A F+Q+P RD V W ++I GY + +
Sbjct: 220 KVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVT 279
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
LF + N+ D+ TIV++++A A +GAL+ G WI K K + F+G+ALID
Sbjct: 280 VKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALID 339
Query: 126 MYCKCT------VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC V F TWTTMI G A G G+KAL++FS M +A KP++V
Sbjct: 340 MYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVT 398
Query: 171 YVGVLSARTHN 181
+V VL+A +H+
Sbjct: 399 FVSVLAACSHS 409
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+FG + ++ + +++ Y++ + ARQ FD+M +R+ V + TMI G+ +V
Sbjct: 90 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 148
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++++ + D+FT++ +L LG +LG+ + I+K+ +++ NAL+DM
Sbjct: 149 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 208
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ------------- 158
Y KC +W T+I G A G + A D+F+Q
Sbjct: 209 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 268
Query: 159 ------------------MLRASIKPDEVAYVGVLSA 177
M ++KPD+V V ++SA
Sbjct: 269 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISA 305
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 116/195 (59%), Gaps = 20/195 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F N++V+ +T++VSGY + V+ R FD+MP+R+ + M+ GY+R + F E
Sbjct: 177 QVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSE 236
Query: 66 ALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ LF+E++ + + + +VS+L A +GA E G+WI +Y+++N ++ D+ G
Sbjct: 237 GVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELG 296
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALID Y KC VK TW+ MI+GLAI+GN AL++F +M + K
Sbjct: 297 TALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPK 356
Query: 166 PDEVAYVGVLSARTH 180
P+EV +VGVL+A H
Sbjct: 357 PNEVTFVGVLTACNH 371
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M NK V+++ ++++G + ++++A + F +MPE + V W TMI ++ + F E
Sbjct: 380 KVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEE 439
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ L +E+Q I GD T+V I +A LGAL+L +WI TYI+KN + D+ G AL+D
Sbjct: 440 AIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVD 499
Query: 126 MYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ +C WT I A+ GN A+++F +ML+ +K D+
Sbjct: 500 MFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFV 559
Query: 171 YVGVLSARTH 180
+V +L+A +H
Sbjct: 560 FVALLTAFSH 569
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KD+ +++ Y +VD+ R+ FD+M ER+ V WT++I+GY VN +EA+ LF E+
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 214
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ + T+V ++A A L LELG+ + + + VK++ NAL+DMY KC
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274
Query: 134 FT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ + T++ G + L + +ML+ +PD+V + ++A
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAA 333
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ + R+ FD+ +++ V++ T++ Y++ E L + E+
Sbjct: 263 ALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRP 322
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D+ T++S + A A LG L +G+ Y+ +N ++ NA+IDMY KC +
Sbjct: 323 DKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVF 382
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW ++I GL G + AL +F +M +++
Sbjct: 383 DSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNL 421
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYIN---REQVDIARQCFDQMPERDYVLWT--TMIDGYLRV 60
++ M K V + +++ + E ++ A F + L+T T+I GY
Sbjct: 40 QLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAAS 99
Query: 61 NRFREALTLF-QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
+EA+ ++ I I+ D FT +L+A + + A G + + K + D+F
Sbjct: 100 GLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFV 159
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
N+LI Y C +WT++I G ++ +A+ +F +M+ +
Sbjct: 160 ANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGV 219
Query: 165 KPDEVAYVGVLSA 177
+P+ V V +SA
Sbjct: 220 EPNPVTMVCAISA 232
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ M +RD WT I + A+ LF E+ ++ D+F V++LTA ++
Sbjct: 510 AMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSH 569
Query: 95 LGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153
G ++ G + ++K + V I ++D+ L +G ++A
Sbjct: 570 GGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDL----------------LGRAGLLEEAF 613
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA-RTH 180
D+ M IKP++V + L+A R H
Sbjct: 614 DLMKSM---PIKPNDVIWGSFLAACRKH 638
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++D+ S+ ++ GY+ ++ A++ FD+M ERD V WTT+I GY++V F+EA
Sbjct: 89 VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEA 148
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + +EFT+ S L A ANL AL+ G WI YIDK+++K + +L+DM
Sbjct: 149 LDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDM 208
Query: 127 YCKC-TVKF----------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC + F W MI G A+ G +A+D+F QM + P++V
Sbjct: 209 YAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKV 268
Query: 170 AYVGVLSARTH 180
+V +L+A +H
Sbjct: 269 TFVALLNACSH 279
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 73 IQTSNIMGDEFTIVSILTARAN-LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ S + + +T V + A N LG LE GE I+ + K +++++F NA+I MY
Sbjct: 23 VRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWG 81
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQM 159
+ ++W MI G SG +A +MF +M
Sbjct: 82 LVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEM 124
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYI 108
W MI GY + +EA+ LF++++ + ++ T V++L A ++ +E G + K+
Sbjct: 235 WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMA 294
Query: 109 DKNKVKNDIFAGNALIDM 126
++ +I ++D+
Sbjct: 295 SSYGIEPEIEHYGCMVDL 312
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + ++++ A++ Y+ + V AR+ FD+MPE+D + WT+MI G ++ RE+
Sbjct: 233 VFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRES 292
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++Q S D + S+L+A A+LG L+ G W+ YID +++K D+ G L+DM
Sbjct: 293 LDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDM 352
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TW I GLAI+G G +AL F ++ + +P+EV +
Sbjct: 353 YAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTF 412
Query: 172 VGVLSARTHN 181
+ V +A HN
Sbjct: 413 LAVFTACCHN 422
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ M RD V WT +I GY++ F EA++LF + +G T VSIL A
Sbjct: 163 AGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVG---TFVSILGACGK 219
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
LG L LG+ I + K ++ NA++DMY KC +WT+M
Sbjct: 220 LGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSM 279
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL + ++LD+FSQM + +PD V VLSA
Sbjct: 280 IGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSA 317
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 21/166 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEI 73
DV T +V Y +D+A++ F+ MP ++ W I G L +N + +EAL F+++
Sbjct: 342 DVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGG-LAINGYGKEALKQFEDL 400
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S +E T +++ TA + G ++ G + Y N++ + ++ + ++ Y C V
Sbjct: 401 VESGTRPNEVTFLAVFTACCHNGLVDEG---RKYF--NEMTSPLYNLSPCLEHY-GCMVD 454
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG-VLSAR 178
+VG A+ ++++ P +V +G +LS+R
Sbjct: 455 LLCRAGLVGEAV------------ELIKTMPMPPDVQILGALLSSR 488
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 115/198 (58%), Gaps = 18/198 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ F +F + +D+ ++ A+++GY ++ A + F MP+R+ V WT MI GY +
Sbjct: 133 VAFAHRVFDEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQN 192
Query: 61 NRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R+ +AL LF +++ N + +E TI SIL A ANLGALE+G+ I+TY +N + +++
Sbjct: 193 GRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVGDRIETYARENGLLRNLYV 252
Query: 120 GNALIDMYCKCTV-----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
NAL++MY +C +W +MI+GLAI G AL ++++ML
Sbjct: 253 SNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIE 312
Query: 163 SIKPDEVAYVGVLSARTH 180
I PD+V +VG+L A TH
Sbjct: 313 GIAPDDVTFVGILLACTH 330
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 23/172 (13%)
Query: 27 INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86
I V A + D +P + L+ +I Y N+ + +++ ++++ N G++ T
Sbjct: 27 IQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQNQLHQCFSIYSQMRSRNCTGNQHTFT 86
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF----------- 134
+ A A+ + + + T+ K+ ++D+ A AL+DMYCK V F
Sbjct: 87 FLFAACASFFSPLHAQMLHTHFKKSGFESDVIALTALVDMYCKLGMVAFAHRVFDEIPVR 146
Query: 135 ---TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE--VAYVGVLSARTHN 181
TW +I G + G+ + AL +F M PD V++ ++S + N
Sbjct: 147 DIPTWNALIAGYSRCGDMEGALKIFKLM------PDRNVVSWTAMISGYSQN 192
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-R 64
++F KDV+SY A++ G+I D AR+ FD+MP RD V W T++ GY +
Sbjct: 185 QVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCM 244
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+A+ LF + S + D +VS L+A A LG LE G+ I YI +N++ + F L+
Sbjct: 245 DAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLV 304
Query: 125 DMYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D+Y KC T + FTW ++VGL + G G +L FS+M+ A IKPD V
Sbjct: 305 DLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGV 364
Query: 170 AYVGVLSARTH 180
+++G+L H
Sbjct: 365 SFLGILVGCGH 375
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 109/193 (56%), Gaps = 16/193 (8%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
E+F M ++V+S++ +VSGY + +++AR FD+MP ++ V WT M+ +
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EA LF +++ +++ D +VSIL A A G+L LG+ I Y+ K + NAL
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 240
Query: 124 IDMYCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
IDM+CKC TV+ +W ++I G A+ G+GDKAL++F+QM + PD
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300
Query: 168 EVAYVGVLSARTH 180
V + VLSA TH
Sbjct: 301 AVTMINVLSACTH 313
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + ++ R+ FD+MPE+D V W T++DGY +
Sbjct: 61 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++ G LE+ + DK KN +
Sbjct: 121 AFELFQRMPERNVV----SWSTMVSGYCKKGDLEMA---RVIFDKMPSKNLV-------- 165
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G D+A +F+QM AS++ D A V +L+A
Sbjct: 166 ---------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 208
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 112/191 (58%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M NK+V+S+T++++ Y + V+ AR+ FDQMPE++ V W +MI Y++ + RE
Sbjct: 245 RVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCRE 304
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+ + ++ +E T++S+L+A +G L +G+ I YI + N+LID
Sbjct: 305 ALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLID 364
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W +I LA+ G G +A+++F +M A + PDE+
Sbjct: 365 MYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPDEIT 424
Query: 171 YVGVLSARTHN 181
++G+LSA +H+
Sbjct: 425 FMGLLSACSHS 435
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ YI + AR+ FD M ER V W +MI GY ++ +E LF+E++
Sbjct: 128 GLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEA 187
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D+FT+V++L + + LG ++ YI +K D+ A NALIDMY KC
Sbjct: 188 DDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVF 247
Query: 131 -------TVKFT-----------------------------WTTMIVGLAISGNGDKALD 154
V +T W +MI G +ALD
Sbjct: 248 QQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALD 307
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +M + P+E + VLSA
Sbjct: 308 LFHEMHSFRVVPNEATLLSVLSA 330
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-E 65
I GT V +++ Y + IA F++MP ++ V W +I G L ++ + E
Sbjct: 347 ICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVII-GALALHGYGVE 405
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
A+ LF+++Q + + DE T + +L+A ++ G ++ G + Y DK
Sbjct: 406 AVELFRKMQAAGVWPDEITFMGLLSACSHSGLVDSGLY---YFDK 447
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A F+Q+ + ++ ++I GY N +++ L++++ S + +EFT +L A
Sbjct: 38 LDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKA 97
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKF--------------TW 136
A+ A + + + K + I N LI+ Y C +++ +W
Sbjct: 98 CASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSW 157
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+MI G + G + +F +M + D+ V +L
Sbjct: 158 NSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLL 196
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VSGY + +++AR FD+MP ++ V WT M+ +
Sbjct: 245 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 304
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF +++ +++ D +VSIL A A G+L LG+ I Y+ K + NALI
Sbjct: 305 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 364
Query: 125 DMYCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC TV+ +W ++I G A+ G+GDKAL++F+QM + PD
Sbjct: 365 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 424
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 425 VTMINVLSACTH 436
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + ++ R+ FD+MPE+D V W T++DGY +
Sbjct: 184 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 243
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++ G LE+ I DK KN +
Sbjct: 244 AFELFQRMPERNVV----SWSTMVSGYCKKGDLEMARVI---FDKMPSKNLV-------- 288
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G D+A +F+QM AS++ D A V +L+A
Sbjct: 289 ---------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 331
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VSGY + +++AR FD+MP ++ V WT M+ +
Sbjct: 552 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 611
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF +++ +++ D +VSIL A A G+L LG+ I Y+ K + NALI
Sbjct: 612 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 671
Query: 125 DMYCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC TV+ +W ++I G A+ G+GDKAL++F+QM + PD
Sbjct: 672 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 731
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 732 VTMINVLSACTH 743
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + ++ R+ FD+MPE+D V W T++DGY +
Sbjct: 491 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 550
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++ G LE+ I DK KN +
Sbjct: 551 AFELFQRMPERNVV----SWSTMVSGYCKKGDLEMARVI---FDKMPSKNLV-------- 595
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G D+A +F+QM AS++ D A V +L+A
Sbjct: 596 ---------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAA 638
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + TA+V Y + A Q FD+MPER+ V W +I GY +F +A+ F+ +
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
E T+V +L+A ++LGA G+WI +I N+++ ++F G ALIDMY KC
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TW +I G A++G GD AL FS+ML + KPDEV ++GVL A
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 180 H 180
H
Sbjct: 303 H 303
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 51 TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
+MI YL +N+ +L +F + +I+ D T ++L A A L +G+ I + +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 111 NKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDM 155
D++ AL+ +YC C TW +I G + KA+D
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
F ML +P E V VLSA +H
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSH 202
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V + F+++ E++ W +I GY + AL F + N
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFK 288
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
DE T + +L A + G + G W + + F I+ Y M
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ------FGLQPRIEHY---------GCM 333
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G ++AL++ M SI+PD + + +L A R H
Sbjct: 334 VDLLGRAGLLEEALELIQSM---SIEPDPIIWRALLCACRVH 372
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/191 (34%), Positives = 110/191 (57%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V+S TA+++ Y N +D AR+ FD +P +D++ W MIDGY + + EA
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALID 125
L LF+ + S+ DE T+V +L+A A LG +E G+W+ +Y+ ++ V+ ++ AL+D
Sbjct: 236 LQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVD 295
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC W MI G A+ G+ KAL+MF Q+ + P ++
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355
Query: 171 YVGVLSARTHN 181
++G+L+A +H+
Sbjct: 356 FIGLLNACSHS 366
Score = 42.4 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ A F + +D V+W MI+GY R+AL +F +++ +
Sbjct: 291 TALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLW 350
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T + +L A ++ G +E G
Sbjct: 351 PTDITFIGLLNACSHSGLVEEG 372
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 100/181 (55%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + TA+V Y + A Q FD+MPER+ V W +I GY +F +A+ F+ +
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
E T+V +L+A ++LGA G+WI +I N+++ ++F G ALIDMY KC
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TW +I G A++G GD AL FS+ML + KPDEV ++GVL A
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 180 H 180
H
Sbjct: 303 H 303
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 51 TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
+MI YL +N+ +L +F + +I+ D T ++L A A L +G+ I + +
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117
Query: 111 NKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDM 155
D++ AL+ +YC C TW +I G + KA+D
Sbjct: 118 MGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDA 177
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
F ML +P E V VLSA +H
Sbjct: 178 FRGMLADGAQPSERTVVVVLSACSH 202
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V + F+++ E++ W +I GY + AL F + N
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFK 288
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
DE T + +L A + G + G W + + F I+ Y M
Sbjct: 289 PDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ------FGLQPRIEHY---------GCM 333
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G ++AL++ M SI+PD + + +L A R H
Sbjct: 334 VDLLGRAGLLEEALELIQSM---SIEPDPIIWRALLCACRVH 372
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 18/197 (9%)
Query: 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GFT E +F + D++++ ++ G VD +R+ FD+M R+ V W +MI GY+
Sbjct: 171 GFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYV 230
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R RF +AL LFQ++Q I EFT+VS+L A A LGA+ GEWI Y+ K K + +
Sbjct: 231 RNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPI 290
Query: 119 AGNALIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
A+IDMY KC V+ W +MI+GLA++G ++AL +FS + +
Sbjct: 291 VVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSD 350
Query: 164 IKPDEVAYVGVLSARTH 180
++PD+V+++ VL+A H
Sbjct: 351 LRPDDVSFIAVLTACDH 367
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+ I TAI+ Y +D A Q F P R W +MI G + EAL LF +Q
Sbjct: 288 NPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQ 347
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+S++ D+ + +++LTA + G ++ ++ DK K+K I + ++D+
Sbjct: 348 SSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDV 400
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 21/160 (13%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQ 74
++++ A +G IN A F Q+ + W T+I G+ R + + +++L+ + +
Sbjct: 60 ILAFCASPAGDIN-----YAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLL 114
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
TS + T S+ A A L G + + K ++ND F N ++ MY C
Sbjct: 115 TSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTS 174
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQM 159
W TMI+G+A G D++ +F +M
Sbjct: 175 EARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKM 214
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/191 (34%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+S+ +++G+ +V+ AR FDQMP R+ V WT +IDGY R + E
Sbjct: 535 KVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAE 594
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
ALTL + + I E T+++++ A +NLG + +GE + Y +K + +D GN+LID
Sbjct: 595 ALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLID 654
Query: 126 MYCKC-----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+Y K ++K +WT++I G A+ G +AL++F++M RA IKP+ +
Sbjct: 655 LYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRI 714
Query: 170 AYVGVLSARTH 180
++ V++A +H
Sbjct: 715 TFLSVINACSH 725
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++ Y V + + FD+M +R + V WT++I G+ EAL LF E++ + I
Sbjct: 651 SLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIK 710
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T +S++ A ++ G +E G + K+ + + + +I +IDM +
Sbjct: 711 PNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQ 770
Query: 139 MIVGLAISGN-------------------GDKALDMFSQMLRAS 163
+I GL + N G++A+ M S + R S
Sbjct: 771 IIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERES 814
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M DV+S+T +++GY AR+ FD+MPER+ V W+TMI GY R N F +A
Sbjct: 174 VFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKA 233
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ F+ +Q ++ +E +V ++++ A+LGAL +GE Y+ +NK+ ++ G A++DM
Sbjct: 234 VETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDM 293
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C V+ WT +I GLA+ G +KAL FS+M + P ++ +
Sbjct: 294 YARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITF 353
Query: 172 VGVLSARTH 180
VL+A +H
Sbjct: 354 TAVLTACSH 362
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 11 MKNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
M+NK ++I TA+V Y V+ A F+Q+PE+D + WT +I G +AL
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
F E+ + + T ++LTA ++ G +E G
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSHAGMVERG 369
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
+ T +V+ + ++ GY+ + +R+ FD MP + V W MI G + F+EA+
Sbjct: 182 YQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAI 241
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F ++Q ++ + T+VS+L A + LGA+ELG+W+ + +KN+++ D G+ALIDMY
Sbjct: 242 EMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMY 301
Query: 128 CKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
KC TW+ +I GLA+ G ALD F +M +A + P +V Y
Sbjct: 302 SKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVY 361
Query: 172 VGVLSARTH 180
+GVLSA +H
Sbjct: 362 IGVLSACSH 370
Score = 35.8 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 20 TAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+A++ Y +D A Q F+ + +++ + W+ +I G R R+AL F +Q + +
Sbjct: 295 SALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGV 354
Query: 79 MGDEFTIVSILTARANLGALELGEWI 104
+ + +L+A ++ G +E G I
Sbjct: 355 TPSDVVYIGVLSACSHAGLVEEGRSI 380
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 111/188 (59%), Gaps = 15/188 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F +M +D++S+ +++ GY ++++AR+ FD+M +++ + W+ MIDGY + +EAL
Sbjct: 231 FDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEAL 290
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+++ I D ++V ++A + LGAL+ G WI Y+ +N++ DI AL+DMY
Sbjct: 291 NLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMY 350
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC + +W MIVGL ++G G +AL+ F+QM I D++ ++
Sbjct: 351 LKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFL 410
Query: 173 GVLSARTH 180
GVL A +H
Sbjct: 411 GVLMACSH 418
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 31/180 (17%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLR-- 59
G+ +F KD++S+ +++ GY+ +++ A+ FD+MPERD V W+ MIDGY +
Sbjct: 162 GWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM 221
Query: 60 --VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
VNR R F + T +++ + S++ A +G +E+ I DK KN I
Sbjct: 222 GEVNRAR---VFFDSMPTRDLV----SWNSMIDGYAKVGEMEVAREI---FDKMLQKNVI 271
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ MI G A + +AL++F QML IKPD V+ VG +SA
Sbjct: 272 -----------------SWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++VS +N V+ A F Q+ + + + TM+ Y + AL + E++ ++G
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLG 108
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D +T +L A + L G ++ K D+F N LI MYC+C
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 18/190 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ F ++F + D+ S+ AI+ + IAR+ FDQMP R+ + W+ MI GY
Sbjct: 109 LTFARQVFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCMIHGYASC 168
Query: 61 NRFREALTLFQEIQT---SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
++ AL+LF+ +QT S + +E A LGALE G+W+ YIDK +K D+
Sbjct: 169 GEYKAALSLFRSLQTLEGSKVQPNEXC--------ARLGALEHGKWVHAYIDKTGMKIDV 220
Query: 118 FAGNALIDMYCKCTVKF-------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
G +LIDMY KC F W+ MI A+ G ++ L++F++M+ ++P+ V
Sbjct: 221 VLGTSLIDMYAKCGXIFGPEKDVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAVT 280
Query: 171 YVGVLSARTH 180
+VGVL A H
Sbjct: 281 FVGVLCACVH 290
Score = 36.2 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG- 101
PE+D + W+ MI + E L LF + + + T V +L A + G + G
Sbjct: 239 PEKDVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAVTFVGVLCACVHGGLVSEGN 298
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFTWT----------TMIVGLAISGNG 149
E+ K + + V I ++D+Y + ++ W+ MI G +SG G
Sbjct: 299 EYFKKRMKEYGVSPTIQHYGCIVDLYSRAGRIEDAWSVVKSMPVEPDVMIWGALLSGLG 357
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 115/195 (58%), Gaps = 20/195 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G LE++ + DV++ +++ GY ++D +R FD M R V W +MI GY+R
Sbjct: 187 GKKLELY----DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNG 242
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+ EAL LF ++Q EFT+VS+L A A+LGAL+ G+W+ YI +N + ++
Sbjct: 243 KLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVT 302
Query: 122 ALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IK 165
A+IDMYCKC +V+ W ++I+GLA++G+ +A + FS++ + +K
Sbjct: 303 AIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLK 362
Query: 166 PDEVAYVGVLSARTH 180
PD V+++GVL+A H
Sbjct: 363 PDSVSFIGVLTACKH 377
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 58/229 (25%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G TL + + +++ A SG IN A + F +MP + W T+I + R +
Sbjct: 55 GLTLNPIASTR---ALTFCASPSGNIN-----YAYKLFVRMPNPNLYSWNTIIRAFSRSS 106
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+ A++LF ++ S I T S+ A A LG G + + K ++ND F N
Sbjct: 107 TPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICN 166
Query: 122 ALIDM-----------------------------------YCKC---------------T 131
+I M Y KC
Sbjct: 167 TIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITR 226
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W +MI G +G +AL++F++M + E V +L+A H
Sbjct: 227 TSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAH 275
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F TM +D +S+ +++GY N V+ Q F++MPER+ W +I GY F E
Sbjct: 283 KLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 342
Query: 66 ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L F+ + ++ ++ T+V++L+A A LGAL+LG+W+ Y K I+ GNALI
Sbjct: 343 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 402
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC + TW +MI GLA G G AL +F QM KPD +
Sbjct: 403 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 462
Query: 170 AYVGVLSARTH 180
++GVL + TH
Sbjct: 463 TFIGVLCSCTH 473
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M ++++++T+++SGYI +V +AR+ FD PERD VLW M+ GY+ +
Sbjct: 216 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 275
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A LF + + M + ++L AN G +E E + + + V
Sbjct: 276 GDMKAARKLFDTMPYRDTM----SWNTMLNGYANNGDVEACEQLFEEMPERNV------- 324
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G A +G + L F +ML + P++ V VLSA
Sbjct: 325 -------------FSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSA 369
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+V+ ++ +Q+ AR FD P+ LW + GY +RE + LF ++++ ++ +
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
FT +L + A +GA GE I + K ++ + F LID+Y
Sbjct: 165 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVY 210
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ A + F+ M +D + W +MI G +ALTLF +++ +
Sbjct: 400 ALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKP 459
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
D T + +L + +LG +E G + + +++ + I ++D++
Sbjct: 460 DGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLF 507
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 15/168 (8%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N E+ I + FD M E+D V+W MI G ++ R ++AL LFQE+QTSN DE T++
Sbjct: 242 NLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIH 301
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TV 132
L+A + LGAL++G WI YI+K+ + ++ G +L+DMY KC
Sbjct: 302 CLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRN 361
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
T+T +I GLA+ G+ A+ F++M+ A I PDE+ ++G+LSA H
Sbjct: 362 SLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 409
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 28/187 (14%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+ A + + + +++ AR+ FD+ P RD V W +I+GY ++ +A+ +++ +++ +
Sbjct: 119 HNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGV 178
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
D+ T++ ++++ A LG L G+ Y+ N ++ I NAL+DM+ KC
Sbjct: 179 KPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARR 238
Query: 131 ----TVKFT----------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
K T W MI G + AL +F +M ++ PDE+
Sbjct: 239 IFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEIT 298
Query: 171 YVGVLSA 177
+ LSA
Sbjct: 299 MIHCLSA 305
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIM---GDEFTIVSILTARANLGALELGEWIKT 106
W I G+ ++A+ ++++ D FT + A+L LG I
Sbjct: 46 WNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILG 105
Query: 107 YIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDK 151
++ K +++ NA I M+ C V+ +W +I G G G+K
Sbjct: 106 HVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEK 165
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
A++++ M +KPD+V +G++S+
Sbjct: 166 AIEVYKVMESEGVKPDDVTMIGLVSS 191
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 113/193 (58%), Gaps = 22/193 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F TM+ KDV S+T++++G+I ++ AR+ FD+MP R+ V WT MI GY++
Sbjct: 160 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 219
Query: 67 LTLFQEIQTSNIMGDEF----TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
L LFQE++ G ++ TIV++L+ A++GA +LG + Y++K + D+ NA
Sbjct: 220 LELFQEMRAE---GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNA 276
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DMY K F+WTTMI GLA+ G G AL+ FS M ++ + P+
Sbjct: 277 LMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPN 336
Query: 168 EVAYVGVLSARTH 180
EV + VLSA +H
Sbjct: 337 EVTLLSVLSACSH 349
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y + +A + F +MP+RD WTTMI G + AL F ++
Sbjct: 270 DVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMS 329
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S ++ +E T++S+L+A ++ G + G + + + + +K I ++D+
Sbjct: 330 KSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDL------- 382
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G +A ++ M IKPD V + +LSA
Sbjct: 383 ---------LGRAGLLREAKELIEHM---PIKPDSVIWRSLLSA 414
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ F+ + D V WT +I YL ++ +A ++F + S + D F +V ++A +
Sbjct: 56 AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 115
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------CTVKFT--------WTTM 139
L G + + + ++ +D GNALIDMY + C+V T WT++
Sbjct: 116 RKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSL 175
Query: 140 IVGLAISGNGDKALDMFSQM-LRASI 164
+ G + + A +F +M +R S+
Sbjct: 176 LNGFIKCNDIEAARRIFDEMPMRNSV 201
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F M+ K+VIS+T++V GY VD AR FD MPE++ + W MI GY +
Sbjct: 236 MDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQN 295
Query: 61 NRFREALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R +AL LF E++ + ++ +E T+VS+L A A+L AL+LG W+ ++ +N++ +
Sbjct: 296 GRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHV 355
Query: 120 GNALIDMYCKC-------------TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASI 164
NAL+DMY KC T K T W +I G ++G +AL++F+ MLR
Sbjct: 356 CNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGF 415
Query: 165 KPDEVAYVGVLSARTH 180
+P+++ VLSA H
Sbjct: 416 EPNQITMTSVLSACNH 431
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF ++F M + ++S+TA++ GY + AR+ FD M +RD + MIDGY+++
Sbjct: 174 VGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKM 233
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R A LF +++ N++ + S++ + G ++ ++ + + V
Sbjct: 234 GRMDLARDLFDKMRVKNVI----SWTSMVHGYSEDGDVDEARFLFDCMPEKNV------- 282
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
+W MI G +G AL +F +M ++ +EV V VL A
Sbjct: 283 -------------LSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPA 327
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 18/147 (12%)
Query: 32 VDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-GDEFTIVSI 88
V AR F+ P D L T+I+ + + +F TL+ + +T I
Sbjct: 70 VQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLI 129
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-CTVKF------------- 134
L + A G I + KN D++ G +L+DMY K V F
Sbjct: 130 LKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSL 189
Query: 135 -TWTTMIVGLAISGNGDKALDMFSQML 160
+WT +IVG A G+ +A +F M+
Sbjct: 190 VSWTAVIVGYARCGDMVEARKLFDGMV 216
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y ++ A+ F++M E+D W +I+GY +EAL +F +
Sbjct: 357 NALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFE 416
Query: 80 GDEFTIVSILTARANLGALELG 101
++ T+ S+L+A + G +E G
Sbjct: 417 PNQITMTSVLSACNHCGLVEEG 438
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 117/195 (60%), Gaps = 16/195 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DV++ T ++S Y ++ V+ A F ++ +D V WT MIDG++R
Sbjct: 198 LGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
AL F+ +Q N+ +EFTIV +L+A + LGALE+G W+ +Y+ K +++ ++F G
Sbjct: 257 EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316
Query: 121 NALIDMYCKC-------TV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY +C TV T+ TMI GL+++G +A+++F M+ ++
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 376
Query: 166 PDEVAYVGVLSARTH 180
P V +VGVL+A +H
Sbjct: 377 PTNVTFVGVLNACSH 391
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 45/191 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F + L+T +IDG++ + +A+ L+ + +I+ D + + SIL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------------T 131
+ AL G + + K + ++ ++++Y KC T
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 132 VKFT-------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
V + WT MI G + ++AL+ F M +++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 276
Query: 167 DEVAYVGVLSA 177
+E V VLSA
Sbjct: 277 NEFTIVCVLSA 287
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A+ FD+M +RD + + TMI G + R+A+ LF+ + +
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 377
Query: 81 DEFTIVSILTARANLGALELG 101
T V +L A ++ G ++ G
Sbjct: 378 TNVTFVGVLNACSHGGLVDFG 398
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F TM +D +S+ +++GY N V+ Q F++MPER+ W +I GY F E
Sbjct: 241 KLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 300
Query: 66 ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L F+ + ++ ++ T+V++L+A A LGAL+LG+W+ Y K I+ GNALI
Sbjct: 301 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 360
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC + TW +MI GLA G G AL +F QM KPD +
Sbjct: 361 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 420
Query: 170 AYVGVLSARTH 180
++GVL + TH
Sbjct: 421 TFIGVLCSCTH 431
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 25/178 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M ++++++T+++SGYI +V +AR+ FD PERD VLW M+ GY+ +
Sbjct: 174 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEI 233
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A LF + + M + ++L AN G +E E + + + V
Sbjct: 234 GDMKAARKLFDTMPYRDTM----SWNTMLNGYANNGDVEACEQLFEEMPERNV------- 282
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G A +G + L F +ML + P++ V VLSA
Sbjct: 283 -------------FSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSA 327
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+V+ ++ +Q+ AR FD P+ LW + GY +RE + LF ++++ ++ +
Sbjct: 63 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
FT +L + A +GA GE I + K ++ + F LID+Y
Sbjct: 123 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVY 168
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ A + F+ M +D + W +MI G +ALTLF +++ +
Sbjct: 358 ALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKP 417
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
D T + +L + +LG +E G + + +++ + I ++D++
Sbjct: 418 DGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLF 465
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F DV+S++ +V ++ ++++ARQ FD MPE+D V WT M+ GY + N REA
Sbjct: 179 VFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREA 238
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + I DE TIVS+++A NLG +E G + +YI++N + NALI+M
Sbjct: 239 LELFWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINM 298
Query: 127 YCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC TW +MI A G + A ++FS ML + I PD + +
Sbjct: 299 YAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITF 358
Query: 172 VGVLSARTH 180
+ +L A TH
Sbjct: 359 LALLIAYTH 367
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 54/198 (27%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ FDQMP+ + + T+I GY + + + LF +++ +++ DEFT ++ AR+
Sbjct: 69 AQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSR 128
Query: 95 L-------GALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKFTW---------- 136
+ LE E I + K + +F NALI++Y K + W
Sbjct: 129 VHKVHNFPSTLECDE-IHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVD 187
Query: 137 -----------------------------------TTMIVGLAISGNGDKALDMFSQMLR 161
T M+ G + + +AL++F +M
Sbjct: 188 VVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSD 247
Query: 162 ASIKPDEVAYVGVLSART 179
A I+PDEV V V+SA T
Sbjct: 248 AGIRPDEVTIVSVISACT 265
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ Y+ +VD A + FD+MP+ D + WT MI+G+++ EA
Sbjct: 77 VFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEA 136
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 137 LVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDL 196
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M PD V +
Sbjct: 197 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTF 256
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 257 TGALTACSH 265
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ AR+ FD+M +R V W ++I G E+L F+++Q D T LTA
Sbjct: 203 VEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTA 262
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G ++ +T K+ I L+D+Y + +G +
Sbjct: 263 CSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSR----------------AGRLE 306
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL + M S+KP+EV +L+A RTH
Sbjct: 307 DALKLVQSM---SMKPNEVVIGSLLAACRTH 334
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D AR FDQMP+++ V W MI GY +R+ EA
Sbjct: 265 LFDLMDRKDVVSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEA 324
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ++ M DE T+VS+++A A LG++E WI +YI K+ + GNALID
Sbjct: 325 LRTFQQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALID 384
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G +AL ++S + R + D+
Sbjct: 385 MFAKCGDVGRARLAFDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTI 444
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 445 FIAALAACAH 454
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+E+F + ++V+S+ IV+ + + A FD+MP RD + W MI GY
Sbjct: 200 AMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNV 259
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
A TLF + +++ + ++++A A +G L+ + D+ KN +
Sbjct: 260 ESARTLFDLMDRKDVV----SWTAMVSAYAKIGDLDSA---RVLFDQMPDKNLV------ 306
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQ-MLRASIKPDEVAYVGVLSA 177
+W MI G + D+AL F Q ML PDE V V+SA
Sbjct: 307 -----------SWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVSA 350
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V AR FD+M R + WTTMI G+ +FREAL ++ +I +
Sbjct: 381 ALIDMFAKCGDVGRARLAFDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTL 440
Query: 81 DEFTIVSILTARANLGALELG 101
D+ ++ L A A+ G L+ G
Sbjct: 441 DDTIFIAALAACAHGGLLQEG 461
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 116/199 (58%), Gaps = 24/199 (12%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L IF +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ +++
Sbjct: 116 LRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYK 175
Query: 65 EALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 176 EALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVL 235
Query: 120 GNALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
G ALIDMY KC VK ++ MI LA+ G D+ +FS+M +
Sbjct: 236 GTALIDMYAKCGSLERAKRVFDALGSKKDVK-AYSAMICCLAMYGLTDECFQVFSEMTTS 294
Query: 163 -SIKPDEVAYVGVLSARTH 180
+I P+ V +VG+L A H
Sbjct: 295 NNINPNSVTFVGILGACVH 313
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 18/178 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVL--WTTMIDGYLRVNRFREALTLFQEIQTSNI 78
A++ Y+ V AR+ FD M ERD + WT MI GY + + EA+ LF+ +Q N+
Sbjct: 181 AMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENV 240
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
DE I+++L+A A+LGAL LGEWI YI+K+K+ + N+LIDMY K
Sbjct: 241 KPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALE 300
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
TWTTMI GLA+ G G +AL +FS M + +KP+EV ++ +LSA +H
Sbjct: 301 LFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSH 358
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+K V Y +++ Y + A + F+ M + + WTTMI G +EAL +F
Sbjct: 276 SKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSC 335
Query: 73 IQTSN-IMGDEFTIVSILTARANLGALELG 101
++ + + +E T ++IL+A +++G +ELG
Sbjct: 336 MEKEDRVKPNEVTFIAILSACSHVGLVELG 365
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ ++ GY V +AR F+QMP R+ V W M+ YL+ + E
Sbjct: 274 KLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGE 333
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L LF I+ + ++ +++S+LTA AN L+LG+WI +YI N+V++D AL+
Sbjct: 334 CLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALL 393
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC + +W +MI+G AI+G+ +KAL+ F +M ++S+ P+
Sbjct: 394 TMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAA 453
Query: 170 AYVGVLSARTH 180
+V VLSA +H
Sbjct: 454 TFVSVLSACSH 464
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 25/164 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++S+ +++ GY+ + +AR+ FD+MPERD W +MI GY+ A LF +
Sbjct: 221 DLVSWNSMIIGYVKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMP 280
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ +++ + ++ A + + + W+ ++ +N I + N ++ +Y KC
Sbjct: 281 SRDVV----SWNCMIDGYAKIRNVSVARWL---FNQMPFRN-IVSWNIMLALYLKCK--- 329
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 177
N + L +F +M+ ++P++ + + VL+A
Sbjct: 330 -------------NYGECLKLFDRMIEERELRPNKASLMSVLTA 360
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + TA+++ Y +D AR F +MP + V W +MI GY +AL F E++
Sbjct: 385 DELLSTALLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEME 444
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYID----KNKVKNDIFAGNALIDM 126
S++M + T VS+L+A ++ L G W Y D K K++ + ++D+
Sbjct: 445 KSSMMPNAATFVSVLSACSHAELLLEGWW---YFDLMQRKYKIEPKVEHCGCMVDL 497
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K +S+ A+V YI V A + F MP+RD V W T+I GY + RF EA
Sbjct: 180 LFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEA 239
Query: 67 LTLFQEIQTSN---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
L LF+++ + + + + TI ++L A A G LE G W+ YID+N++ +D +L
Sbjct: 240 LELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSL 299
Query: 124 IDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
IDMY KC ++WTT+I GLA+ G AL MF M I+PD
Sbjct: 300 IDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPD 359
Query: 168 EVAYVGVLSARTHN 181
+V VGVL+A H
Sbjct: 360 DVTLVGVLNACAHG 373
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++ Y ++ A Q F++ P +RD WTT+I G + +AL +F +Q + I
Sbjct: 298 SLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIR 357
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
D+ T+V +L A A+ G ++ G ++K + I +ID+
Sbjct: 358 PDDVTLVGVLNACAHGGLVDEGLHHFYSLEKYAITPKIEHYGCVIDL 404
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 56/203 (27%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y + AR FD+MP+ V T M + + +AL +F ++ ++
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVL 110
Query: 80 GDEFTIV----------SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY-- 127
D + S A A G+ + I + + D+F LI +Y
Sbjct: 111 PDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGE 170
Query: 128 ---------------CKCTVKF-----------------------------TWTTMIVGL 143
K TV + +W T+I G
Sbjct: 171 YGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGY 230
Query: 144 AISGNGDKALDMFSQMLRASIKP 166
+ G +AL++F QM+ S P
Sbjct: 231 CLIGRFMEALELFRQMMSPSSCP 253
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F KDV+ +T +V GY ++ AR FD+MPER+ + W+ M+ Y RV+ FRE
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+++Q NI+ ++ IVS+LTA A+LGA+ G W+ +Y + + ++ AL+DM
Sbjct: 228 LCLFRQMQKKNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDM 287
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC W MI G A++GN K+L++F +M+ + + E +
Sbjct: 288 YSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATF 347
Query: 172 VGVLSARTH 180
V +L+A TH
Sbjct: 348 VSILAACTH 356
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ + I TA+V Y ++ A + F+ + +D W MI G+ ++L LF +
Sbjct: 275 DSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDK 334
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+ S E T VSIL A + +E G
Sbjct: 335 MIASGTQATEATFVSILAACTHAKMVERG 363
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 107/187 (57%), Gaps = 17/187 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + D +S+ +++ GY ++DIA F +M E++ + WTTMI GY++ +EA
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q S++ D ++ + L+A A LGALE G+WI +Y+ K +++ D G LIDM
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320
Query: 127 YCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +V+ WT +I G A G+G +A+ F +M + IKP+ +
Sbjct: 321 YAKCGDMGEALEVFKNIQRKSVQ-AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 379
Query: 171 YVGVLSA 177
+ VL+A
Sbjct: 380 FTTVLTA 386
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 84/213 (39%), Gaps = 49/213 (23%)
Query: 14 KDVISYTAIVSGYINREQVDI---ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+D + T +S I+ D A+ FD D LW MI G+ + +L L+
Sbjct: 73 QDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLY 132
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-- 128
Q + + + +T S+L A +NL ALE I I K +ND++A N+LI+ Y
Sbjct: 133 QRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAAT 192
Query: 129 --------------------------------KCTVKFT------------WTTMIVGLA 144
K + T WTTMI G
Sbjct: 193 GNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYV 252
Query: 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL +F +M + ++PD V+ LSA
Sbjct: 253 QAGMHKEALQLFHEMQNSDVEPDNVSLANALSA 285
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F + + WT +I GY REA++ F E+Q I + T ++LTA +
Sbjct: 330 ALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSY 389
Query: 95 LGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153
G +E G+ I ++++ +K I ++D+ L+ +G D+A
Sbjct: 390 TGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDL----------------LSRAGLLDEAK 433
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+M +KP+ V + +L A R H
Sbjct: 434 RFIQEM---PLKPNAVIWGALLKACRIHK 459
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 113/187 (60%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ ++V+S+T +++G + ++D AR+ F+++P ++ V WT MI+GY++ + +
Sbjct: 175 KVFDKMRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIK 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+ + N+ +EFT+VS++ A +LG+L+LG + + KN + F G AL+D
Sbjct: 235 AFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVD 294
Query: 126 MYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC VK TW TM+ + G G++ LD+F +M +A + PD +
Sbjct: 295 MYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAIT 354
Query: 171 YVGVLSA 177
+VGVLSA
Sbjct: 355 FVGVLSA 361
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 47/196 (23%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
++D A FDQ+ + D W MI Y ++++ LF+++ + D+FT ++
Sbjct: 67 KIDYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVIN 126
Query: 91 ARANLG-----------ALELGEWIKTYIDKN------KVKNDIFAGNALID-MYCKCTV 132
A G A+++G W Y+ N K+ D+ G + D M + V
Sbjct: 127 ACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVV 186
Query: 133 KFT-----------------------------WTTMIVGLAISGNGDKALDMFSQMLRAS 163
+T WT MI G + N KA D+F +ML +
Sbjct: 187 SWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDN 246
Query: 164 IKPDEVAYVGVLSART 179
++P+E V ++ A T
Sbjct: 247 VRPNEFTLVSLIKACT 262
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +D A + F M R+ W TM+ + E L LF+E++ + ++
Sbjct: 290 TALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVV 349
Query: 80 GDEFTIVSILTARANLGALELGE 102
D T V +L+A + LELG+
Sbjct: 350 PDAITFVGVLSACVQINDLELGQ 372
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ ++V S+ ++SGY V AR+ FD MP +D V W M+ Y V + E
Sbjct: 198 LFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEV 257
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F + S D FT+V++L+A A+LG+L GEW+ YIDK+ ++ + F AL+D
Sbjct: 258 LEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVD 317
Query: 126 MYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K TW ++I GL++ G G AL++FS+M+ KP+ +
Sbjct: 318 MYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGIT 377
Query: 171 YVGVLSARTH 180
++GVLSA H
Sbjct: 378 FIGVLSACNH 387
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V A +++ + ++I Y + ALT+F+E+ + D+++ +L A
Sbjct: 60 VSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKA 119
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
A E G I K+ + D+F N LI++Y +
Sbjct: 120 CAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGR 157
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++D A + F +RD W ++I G ++AL +F E+
Sbjct: 313 TALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFK 372
Query: 80 GDEFTIVSILTARANLGALE 99
+ T + +L+A ++G L+
Sbjct: 373 PNGITFIGVLSACNHVGLLD 392
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M +DV+S+T ++ Y ++ A FD +P +D V WT M+ GY +
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQN 253
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIF 118
R +EAL FQ++Q + DE T+ +++A A LGA++ WI+ +++ ++
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVV 313
Query: 119 AGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G+ALIDMY KC F++++MI+G A+ G AL +F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 164 IKPDEVAYVGVLSARTH 180
I+P++V ++G+LSA +H
Sbjct: 374 IRPNKVTFIGILSACSH 390
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 47/186 (25%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + LWT MI GY E+ + ++ + FT ++ A +
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 99 ELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT----- 135
+LG+ + I +D++ GN++ID+Y KC V +T
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 136 ------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
WT M+ G A +G +AL+ F +M ++ DEV
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 172 VGVLSA 177
GV+SA
Sbjct: 279 AGVISA 284
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
FG N V+ +A++ Y D A + F+ M ER+ +++MI GY R AL
Sbjct: 306 FGPSGN--VVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSAL 363
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF ++ + I ++ T + IL+A ++ G +E G + ++K F G A +
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-------FFGVAPSPDH 416
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
C V L +G ++ALD+ M ++P+ + +L A R H
Sbjct: 417 YACMVDL--------LGRAGCLEEALDLVKTM---PMEPNGGVWGALLGACRIH 459
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VSGY + +++AR FD+MP ++ V WT M+ +
Sbjct: 270 FELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVE 329
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF +++ + + D +VSIL A A G+L LG+ I Y+ ++ NA+I
Sbjct: 330 EAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMI 389
Query: 125 DMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC +W T+I G A+ G+GDKALD F+QM +PD
Sbjct: 390 DMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDA 449
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 450 VTMINVLSACTH 461
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D +S+ + ++ + + +V AR+ FD+MP++D V W T++DGY + + +
Sbjct: 209 KVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMED 268
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++ G +E+ I DK KN +
Sbjct: 269 AFELFQCMPERNVV----SWSTVVSGYCKKGDIEMARVI---FDKMPTKNLV-------- 313
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A +G ++A +F+QM A+++ D A V +L+A
Sbjct: 314 ---------TWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAA 356
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 25 GYINREQVDIARQCFD-QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
G +NR A FD ++ E+D V W T+I G+ +AL F +++ D
Sbjct: 396 GCVNR-----ADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAV 450
Query: 84 TIVSILTARANLGALELG 101
T++++L+A ++G +E G
Sbjct: 451 TMINVLSACTHMGFVEEG 468
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV+ T ++ Y ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 158 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 217
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ SN+ D FT+VS+L++ A++GAL +G + + + ++ +IF GNALIDMY KC
Sbjct: 218 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 277
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 278 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 337
Query: 178 RTH 180
+H
Sbjct: 338 CSH 340
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG + F + +++ A++ Y + A F+ MP+RD W +MI GY
Sbjct: 245 MGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYG 304
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
R EA+T F + + + + T + +L ++ G ++ G
Sbjct: 305 VHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 347
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV+ T ++ Y ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 140 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 199
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ SN+ D FT+VS+L++ A++GAL +G + + + ++ +IF GNALIDMY KC
Sbjct: 200 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 259
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 260 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 319
Query: 178 RTH 180
+H
Sbjct: 320 CSH 322
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG + F + +++ A++ Y + A F+ MP+RD W +MI GY
Sbjct: 227 MGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYG 286
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
R EA+T F + + + + T + +L ++ G ++ G
Sbjct: 287 VHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 329
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++F TM + V++Y +VSG + VD A + FD MP D V WT +IDG+++ R
Sbjct: 125 LALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F+ + ++ D T++++++A A +GAL LG W+ + + ++ ++ N+
Sbjct: 185 HDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANS 244
Query: 123 LIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C VK +W +MIVGLA +G +A+++F +M R KPD
Sbjct: 245 LIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPD 304
Query: 168 EVAYVGVLSARTH 180
V GVL+A +H
Sbjct: 305 AVTLTGVLTACSH 317
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++V +++ Y QV +A Q F + +R V W +MI G EA+ LF+E
Sbjct: 236 ERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEE 295
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
++ D T+ +LTA ++ G E G
Sbjct: 296 MRRQGFKPDAVTLTGVLTACSHAGLTEHG 324
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F TM+ KDV S+T++++G+I ++ AR+ FD+MP R+ V WT MI GY++
Sbjct: 411 VFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPG 470
Query: 67 LTLFQEIQTSNIMGDEF----TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
L LFQE++ G ++ TIV++L+ A++GA +LG + Y++K + D+ NA
Sbjct: 471 LELFQEMRAE---GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNA 527
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DMY K F+WTTMI GLA+ G G AL+ FS M ++ P+
Sbjct: 528 LMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPN 587
Query: 168 EVAYVGVLSARTH 180
EV + VLSA +H
Sbjct: 588 EVTLLSVLSACSH 600
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ F+ + D V WT +I YL ++ +A ++F + S + D F +V ++A +
Sbjct: 307 AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 366
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------CTVKFT--------WTTM 139
L G + + + ++ +D GNALIDMY + C+V T WT++
Sbjct: 367 RKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSL 426
Query: 140 IVGLAISGNGDKALDMFSQM-LRASI 164
+ G + + A +F +M +R S+
Sbjct: 427 LNGFIKCNDIEAARRIFDEMPMRNSV 452
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y + +A + F +MP+RD WTTMI G + AL F ++
Sbjct: 521 DVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMS 580
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S +E T++S+L+A ++ G + G + + + + +K I ++D+
Sbjct: 581 KSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDL------- 633
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G +A ++ M IKPD V + +LSA
Sbjct: 634 ---------LGRAGLLREAKELIEHM---PIKPDSVIWRSLLSA 665
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 105/184 (57%), Gaps = 15/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV+ T ++ Y ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 533 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 592
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ SN+ D FT+VS+L++ A++GAL +G + + + ++ +IF GNALIDMY KC
Sbjct: 593 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 652
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 653 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 712
Query: 178 RTHN 181
+H
Sbjct: 713 CSHQ 716
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG + F + +++ A++ Y + A F+ MP+RD W +MI GY
Sbjct: 620 MGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYG 679
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDI 117
R EA+T F + + + + T + +L ++ G ++ G ++ + +K I
Sbjct: 680 VHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGI 739
Query: 118 FAGNALIDMY 127
++D++
Sbjct: 740 KHYGCMVDLF 749
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +++++S+ ++++GY+ VD AR+ FD+MPER+ V WTTMI G ++ R ++A
Sbjct: 90 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 149
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND----IFAGNA 122
L LF E++ + + D+ +V+ L+A A LG L+LG WI +YID+ + + N+
Sbjct: 150 LHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNS 209
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI--- 164
LI MY C V +WT+MI G A G+ ++AL +F M R
Sbjct: 210 LIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEG 269
Query: 165 KPDEVAYVGVLSARTH 180
+PD + ++GVL A +H
Sbjct: 270 RPDGITFIGVLCACSH 285
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M NK +S+ ++++G++ ++ A + F MP+ D V W TMI ++ + F+EA
Sbjct: 398 VFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEA 457
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+ +Q+ I D+ T+V + +A LGAL+L +WI YI K + D+ G AL+DM
Sbjct: 458 IELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDM 517
Query: 127 YCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ +C VK WT I +A+ GNG A+++F +ML+ IKPD V +
Sbjct: 518 FARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVF 577
Query: 172 VGVLSARTH 180
V +L+A +H
Sbjct: 578 VALLTALSH 586
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D+ +++ Y ++D R+ FD+M ER+ V WT++I GY + ++EA++LF E+
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM 231
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
I + T+V +++A A L L+LGE + T I + +++ + NAL+DMY KC
Sbjct: 232 VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ T++ G + L + +ML+ +PD + + +SA
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSA 350
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y+ +D AR+ FD+ +++ VL+ T++ Y+R RE L + E+
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRP 339
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D T++S ++A + L + G+W Y+ +N ++ NA+I+MY KC
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399
Query: 131 -----TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+ +W ++I G +G+ + A +FS M
Sbjct: 400 DRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM 433
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKT 106
+ +++++I G+ +A+ +F+++ + D FT +L+A AL G +
Sbjct: 104 HYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHG 163
Query: 107 YIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDK 151
I K + D+F N+LI Y +C +WT++I G A G +
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKE 223
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
A+ +F +M+ I+P+ V VGV+SA
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISA 249
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 7 IFGTMKNKDVI----SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
I G +K KD+ TA+V + A Q F++M +RD WT I
Sbjct: 495 IHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGN 554
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
A+ LF E+ I D V++LTA ++ G +E G W IF +
Sbjct: 555 GTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQG-W------------HIF--RS 599
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ D+Y + M+ L +G +AL + + M ++P++V + +L+A R H
Sbjct: 600 MKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSM---QMEPNDVIWGSLLAACRVH 655
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M KDV+S+TA+VS Y ++D AR FDQMP+++ V W MI GY R+ +
Sbjct: 267 SLFDIMDRKDVVSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDD 326
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL FQ++ M DE T+VS+++A A LG++E WI +YI K+ + GNAL+
Sbjct: 327 ALCTFQQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALV 386
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DM+ KC TWTTMI G A +G +AL +++ M R + D+
Sbjct: 387 DMFAKCGDVGRAHLVFNKMKTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDT 446
Query: 170 AYVGVLSARTH 180
+V L A H
Sbjct: 447 VFVAALGACAH 457
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M N+DV+S+ +IV Y++ A + F+ MPER+ V W T++ + R
Sbjct: 169 VGIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAAFTRA 228
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
A +F + + D + +++ A G +E + +D + D+ +
Sbjct: 229 GDMVSARAVFDRMP----IRDAISWNLMISGYATSGNVESAWSLFDIMD----RKDVVSW 280
Query: 121 NALIDMYCK------CTVKF---------TWTTMIVGLAISGNGDKALDMFSQ-MLRASI 164
A++ Y K V F +W MI G + D AL F Q ML
Sbjct: 281 TAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRF 340
Query: 165 KPDEVAYVGVLSA 177
PDE V V+SA
Sbjct: 341 MPDEATLVSVVSA 353
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V + V A F++M R + WTTMI G+ +FREAL ++ ++ +
Sbjct: 384 ALVDMFAKCGDVGRAHLVFNKMKTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTL 443
Query: 81 DEFTIVSILTARANLGALELG 101
D+ V+ L A A+ G L+ G
Sbjct: 444 DDTVFVAALGACAHGGLLQEG 464
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +++++S+ ++++GY+ VD AR+ FD+MPER+ V WTTMI G ++ R ++A
Sbjct: 176 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND----IFAGNA 122
L LF E++ + + D+ +V+ L+A A LG L+LG WI +YID+ + + N+
Sbjct: 236 LHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNS 295
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI--- 164
LI MY C V +WT+MI G A G+ ++AL +F M R
Sbjct: 296 LIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEG 355
Query: 165 KPDEVAYVGVLSARTH 180
+PD + ++GVL A +H
Sbjct: 356 RPDGITFIGVLCACSH 371
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++S YI + A + F+++ +W MI G+ + + + L+ + + +
Sbjct: 56 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 115
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------------- 128
EFT ++ A L GE + + N ++F +L+++Y
Sbjct: 116 EFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 175
Query: 129 ---------------------KC-----------------TVKFTWTTMIVGLAISGNGD 150
+C V +T TMI G A G
Sbjct: 176 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWT--TMIAGCAQIGRCK 233
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M RA +K D+VA V LSA
Sbjct: 234 QALHLFHEMRRAGVKLDQVALVAALSA 260
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 107/193 (55%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++FG+M + +++Y +++G + V AR+ FD MPE D V WT +IDG ++ R
Sbjct: 124 LALQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGR 183
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F + + D T+V+ ++A A +GAL LG W+ + + +++ +I N+
Sbjct: 184 HDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIRIANS 243
Query: 123 LIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C V+F +W +MIVG A +G A++ F M R +PD
Sbjct: 244 LIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPD 303
Query: 168 EVAYVGVLSARTH 180
V + GVL+A +H
Sbjct: 304 AVTFTGVLTACSH 316
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y QV+ ARQ FD M R V W +MI G+ R +A+ F+ ++
Sbjct: 243 SLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRP 302
Query: 81 DEFTIVSILTARANLGALELG 101
D T +LTA ++ G + G
Sbjct: 303 DAVTFTGVLTACSHAGLTDEG 323
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F N+D++ + +++ GY + ++D AR F++MPER+ + W+ ++DGY+R E
Sbjct: 227 ELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSE 286
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LFQ + I D V TA A LGALE G W+ +Y++K KV D+ ALID
Sbjct: 287 ALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALID 346
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MI+GL G A+ +F QM D+++
Sbjct: 347 MYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLS 406
Query: 171 YVGVLSARTH 180
+ VL+A TH
Sbjct: 407 VLAVLTACTH 416
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL---G 101
RD W T+I + + R AL F ++ + + D +T ++L A A G L L
Sbjct: 76 RDAFPWNTLIRLHAPASP-RNALAYFACMRRAAVEPDAYTFPAVLKACA-CGVLGLPVHA 133
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCK---CTVK-----------FTWTTMIVGLAISG 147
E ++T +D D+F NAL+ YC+ C +W +M+ G G
Sbjct: 134 EAVRTGMD-----GDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSWNSMVAGYVACG 188
Query: 148 NGDKALDMFSQM 159
+ A ++F M
Sbjct: 189 ELELAQELFDGM 200
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 22/196 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +++++S+ ++++GY+ VD AR+ FD+MPER+ V WTTMI G ++ R ++A
Sbjct: 192 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 251
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND----IFAGNA 122
L LF E++ + + D+ +V+ L+A A LG L+LG WI +YID+ + + N+
Sbjct: 252 LHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNS 311
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI--- 164
LI MY C V +WT+MI G A G+ ++AL +F M R
Sbjct: 312 LIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEG 371
Query: 165 KPDEVAYVGVLSARTH 180
+PD + ++GVL A +H
Sbjct: 372 RPDGITFIGVLCACSH 387
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++S YI + A + F+++ +W MI G+ + + + L+ + + +
Sbjct: 72 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 131
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------------- 128
EFT ++ A L GE + + N ++F +L+++Y
Sbjct: 132 EFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 191
Query: 129 ---------------------KC-----------------TVKFTWTTMIVGLAISGNGD 150
+C V +T TMI G A G
Sbjct: 192 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWT--TMIAGCAQIGRCK 249
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M RA +K D+VA V LSA
Sbjct: 250 QALHLFHEMRRAGVKLDQVALVAALSA 276
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 117/195 (60%), Gaps = 16/195 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DV++ T ++S Y ++ V+ A F ++ +D V WT MIDG++R
Sbjct: 198 LGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
AL F+ +Q N+ +EFTIV +L+A + LGALE+G W+ +Y+ K +++ ++F G
Sbjct: 257 EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316
Query: 121 NALIDMYCKC-------TV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY +C TV T+ TMI GL+++G +A+++F M+ ++
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLR 376
Query: 166 PDEVAYVGVLSARTH 180
P V +VGVL+A +H
Sbjct: 377 PTNVTFVGVLNACSH 391
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 45/191 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F + L+T +IDG++ + EA+ L+ + +I+ D + + SIL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------------T 131
+ AL G + + K ++ ++++Y KC T
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 132 VKFT-------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
V + WT MI G + ++AL+ F M +++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276
Query: 167 DEVAYVGVLSA 177
+E V VLSA
Sbjct: 277 NEFTIVCVLSA 287
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A+ FD+M +RD + + TMI G + R+A+ LF+ + +
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 377
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T V +L A ++ G ++ G E + +V+ I ++D+
Sbjct: 378 TNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL------------- 424
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L G ++A D+ M + PD + +LSA
Sbjct: 425 ---LGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSA 456
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +DV+SYTA+++GY +R +D A + FD++P RD V W MI GY + RF EA
Sbjct: 181 VFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEA 240
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+ +N+ + T++S+L+A A G+L++G W+ ++I+++ ++++I NALIDM
Sbjct: 241 LIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDM 300
Query: 127 YCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K +W MI G +AL +F QML+++++P++V
Sbjct: 301 YAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTL 360
Query: 172 VGVLSA 177
+ +L A
Sbjct: 361 LSILPA 366
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 22/179 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ A F+ + ++ + W MI GY ++ ++EAL LF+++ SN+
Sbjct: 296 ALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEP 355
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA----LIDMYCKC------ 130
++ T++SIL A ANLGAL LG+WI YIDKN +KN A NA LIDMY KC
Sbjct: 356 NDVTLLSILPACANLGALGLGKWIHAYIDKN-MKN--LANNALWTSLIDMYAKCGNIEVA 412
Query: 131 ---------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W MI G A+ G D A+ +FS+M + + PD + ++GVLSA H
Sbjct: 413 NQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNH 471
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+T+++ Y +++A Q FD M + W MI G+ + A++LF + +
Sbjct: 396 WTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGL 455
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYID 109
+ D T + +L+A + G L+LG +ID
Sbjct: 456 VPDNITFIGVLSACNHAGLLDLGHINHFHID 486
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 16/187 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+ + V+S TA+++ Y + +D AR FD +P +D+V W MIDGY + R EAL LF
Sbjct: 448 LPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLF 507
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALIDMYCK 129
+ + S + DE T+V +L+A A LG +E G+W+ +Y+ + +V+ + G ALIDMYCK
Sbjct: 508 RRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCK 567
Query: 130 CTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C W MI G A+ G+ KAL+MF Q + P ++ ++G+
Sbjct: 568 CGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGL 627
Query: 175 LSARTHN 181
L+A +H+
Sbjct: 628 LNACSHS 634
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + A F + ++D V+W MI+GY R+AL +F + + +
Sbjct: 559 TALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLW 618
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T + +L A ++ G +E G E+ ++ + + I ++D+
Sbjct: 619 PTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDL------------ 666
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G +A + M I PD V +V +L+A R H
Sbjct: 667 ----LGRAGLIKEAFCLVQSM---KITPDAVMWVSLLAACRLH 702
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +DV+SY ++ G++ V AR+ FD MP RD V W T+I G + + E
Sbjct: 180 KVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEE 239
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF + I D +VS L+A A LG LE G+ I YI++N +K D F L+D
Sbjct: 240 AIELFDFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVD 299
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC FTW M+VGLA+ G G+ L+ FS+M+ A +KPD ++
Sbjct: 300 FYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGIS 359
Query: 171 YVGVLSARTHN 181
+GVL +H+
Sbjct: 360 ILGVLVGCSHS 370
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 107/186 (57%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F D+++ TA+++ +D AR+ FD+MPERD+V W MI GY + R REA
Sbjct: 169 VFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREA 228
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F +Q + +E ++V +L+A +L L+ G W+ Y+++ KV+ + G AL+DM
Sbjct: 229 LDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDM 288
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +TW++ I GLA++G G+++LD+F+ M R ++P+ + +
Sbjct: 289 YAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITF 348
Query: 172 VGVLSA 177
+ VL
Sbjct: 349 ISVLKG 354
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNI 78
TA+V Y VD A Q F M ER+ W++ I G L +N F E+L LF +++ +
Sbjct: 283 TALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGG-LAMNGFGEESLDLFNDMKREGV 341
Query: 79 MGDEFTIVSILTARANLGALELG 101
+ T +S+L + +G +E G
Sbjct: 342 QPNGITFISVLKGCSVVGLVEEG 364
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW MI G A G +ALD+F M +K +EV+ V VLSA TH
Sbjct: 211 TWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTH 256
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + D IS+ +++SGY+ +++ A+ FD M ++D V W+ MI GY + +RF E
Sbjct: 215 KLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAE 274
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LFQE+Q + DE T+VS+++A +L AL+ G+WI Y+ KN +K ++ G LID
Sbjct: 275 TLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLID 334
Query: 126 MYCK--CTVKF-------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY K C TW +I+GLA++G +LD FS+M + P+E+
Sbjct: 335 MYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEIT 394
Query: 171 YVGVLSARTH 180
+V VL A H
Sbjct: 395 FVAVLVACRH 404
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 49/226 (21%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F D++S+ +I++G + V A + F +M ++D V W+ +I GY +
Sbjct: 81 LGDARKVFDESPVLDLVSWNSILAG---KGDVTEAYRLFSEMCKKDLVSWSALISGYEQN 137
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R+ EAL F ++ IM DE +VS+L+A A+L A++ G+ + + K +++ +
Sbjct: 138 GRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQ 197
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKA------------- 152
NALI MY C + +W +MI G G +KA
Sbjct: 198 NALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLV 257
Query: 153 ------------------LDMFSQMLRASIKPDEVAYVGVLSARTH 180
L +F +M +KPDE V V+SA TH
Sbjct: 258 SWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTH 303
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VI T ++ Y+ V+ A + F M E+ W +I G +L F E++
Sbjct: 325 NVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMK 384
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKND 116
++ +E T V++L A ++G +E G + I ++K++ +
Sbjct: 385 DCGVVPNEITFVAVLVACRHMGLVEEGRCHFSSMIQEHKIEPN 427
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ ++V S+ ++SGY V A++ FD MP RD V W M+ Y V + E
Sbjct: 228 LFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F + + S D FT+VS+L+A A+LG+L GEW+ YIDK+ ++ + F AL+D
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVD 347
Query: 126 MYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K TW ++I L++ G G AL++FS+M+ KP+ +
Sbjct: 348 MYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGIT 407
Query: 171 YVGVLSARTH 180
++GVLSA H
Sbjct: 408 FIGVLSACNH 417
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111
++I Y + ALT+F+E+ + D+++ +L A A E G I K+
Sbjct: 110 SVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKS 169
Query: 112 KVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMF 156
+ D+F N L+++Y + +W +++ G D+A +F
Sbjct: 170 GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALF 229
Query: 157 SQM 159
+M
Sbjct: 230 DEM 232
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M ++V+S++ +V GY +D+AR FD+MP ++ V WT MI GY
Sbjct: 230 MNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEK 289
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++A+ L+ +++ + + D+ T++SIL+A A G L LG+ + I++ + K
Sbjct: 290 GLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS 349
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC +W +I GLA+ G+G+KAL +FS+M
Sbjct: 350 NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFV 409
Query: 166 PDEVAYVGVLSARTH 180
PD+V +VGVL A TH
Sbjct: 410 PDKVTFVGVLCACTH 424
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D +S+ +++ G + ++ AR+ FD+MPERD V W T++DGY++
Sbjct: 173 KVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNA 232
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+++ N++ + +++ + G +++ + DK VKN +
Sbjct: 233 AFELFEKMPARNVV----SWSTMVLGYSKAGDMDMA---RILFDKMPVKNLV-------- 277
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT MI G A G A+++++QM A +K D+ + +LSA
Sbjct: 278 ---------PWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSA 320
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
Q+ +A F+Q+ + D +L+ T+I ++R + A ++F E+Q S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK----------------- 133
A + + + E I ++K DIF N+LID Y KC +
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDT 183
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +MI GL G +A +F +M
Sbjct: 184 VSWNSMIGGLVKVGELGEARRLFDEM 209
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F T+ + D +S+T+++SGY +D A F MP+++ W M+ Y++ NRF EA
Sbjct: 179 VFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEA 238
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
LF ++ +N + D+F ++L+A LGAL+ G+WI YI +N ++ D A++D
Sbjct: 239 FALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVD 298
Query: 126 MYCKCTVK-----------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MYCKC +W MI GLA+ GNG+ A+ +F +M R + PD+
Sbjct: 299 MYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDD 358
Query: 169 VAYVGVLSARTHN 181
+ ++ +L+A H+
Sbjct: 359 ITFLNLLTACAHS 371
Score = 39.7 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
TAIV Y ++ A Q F +P R W MI G A+ LF+E++
Sbjct: 294 TAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQR 353
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYI 108
+ D+ T +++LTA A+ G +E G +Y+
Sbjct: 354 VAPDDITFLNLLTACAHSGLVEEGRNYFSYM 384
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF--REALTLFQEIQTSNIMGDEFTIVSILTAR 92
A + FD +P+ D L+ T+I G+L L L+ + ++++ + FT S+L A
Sbjct: 76 ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIA- 134
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWT 137
++ G I ++ K N+LI MY +WT
Sbjct: 135 --CRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWT 192
Query: 138 TMIVGLAISGNGDKALDMFSQM 159
++I G + G D+A +F M
Sbjct: 193 SLISGYSKWGLIDEAFTIFQLM 214
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 15/175 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ + A+Q FD++ E+D V WT++I G ++ N +EAL LFQ++Q+S I
Sbjct: 172 ALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEP 231
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
D + S+L+A A LGAL+ G W+ +ID+ +K DI G A++DMY KC
Sbjct: 232 DGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIF 291
Query: 133 -------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW ++ GLA+ G+ K L++F +M+R ++P+EV ++ +L+A H
Sbjct: 292 NGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M RD V WT +I GY+R F EA+ LF + ++ + T VS+L A
Sbjct: 88 ASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGR 144
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
G L +G+ I K+ + NAL+DMY KC +WT++
Sbjct: 145 KGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSI 204
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL +AL++F M + I+PD + VLSA
Sbjct: 205 ISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSA 242
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ ++ GY +R + A +++ I + D FT ++L + A + G + I
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 110 KNKVKNDIFAGNALIDMYCKCTVKF----------------TWTTMIVGLAISGNGDKAL 153
K +I+ N+L+ Y C +F +WT +I G +G D+A+
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCK-RFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+F LR ++P+ +V VL A
Sbjct: 121 GLF---LRMDVEPNAATFVSVLVA 141
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ TA+V Y ++++ Q F+ MP ++ + W +++G + L LF+E+
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE----WIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ +E T ++ILTA + G + G W+K + + + ++D+ C+
Sbjct: 327 RVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKG--QQYNLPPRLEHYGCMVDLLCR 383
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV++ T ++ + V+ A + F++M RD V WT +IDG +R F
Sbjct: 181 KMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNR 240
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F+E+Q + +E T V +L+A A LGALELG WI Y+ K V+ + F ALI+
Sbjct: 241 GLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALIN 300
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY +C VK T+ +MI GLA+ G +A+++FS+ML+ ++P+ +
Sbjct: 301 MYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGIT 360
Query: 171 YVGVLSARTH 180
+VGVL+A +H
Sbjct: 361 FVGVLNACSH 370
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 46/198 (23%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y +D A + F + L+T++IDG++ + +A+ LF ++ +++ D + +
Sbjct: 69 YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAV 128
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------------- 132
++L A AL G+ + + K+ + D L+++Y KC V
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPE 188
Query: 133 ---------------------------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
WT +I GL +G ++ L++F +M
Sbjct: 189 RDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM 248
Query: 160 LRASIKPDEVAYVGVLSA 177
++P+EV +V VLSA
Sbjct: 249 QVKGVEPNEVTFVCVLSA 266
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A+ FD + +D + +MI G + EA+ LF E+ +
Sbjct: 297 ALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRP 356
Query: 81 DEFTIVSILTARANLGALELG 101
+ T V +L A ++ G ++LG
Sbjct: 357 NGITFVGVLNACSHGGLVDLG 377
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F M ++V+S++ +VSGY +++AR FD+MP ++ V WT +I G+
Sbjct: 236 MSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEK 295
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+EA TL+ +++ + + D+ T++SIL A A G L LG+ + I K ++K +
Sbjct: 296 GLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVS 355
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+DMY KC +++ +W M+ GLA+ G+G+KA+ +FS+M + K
Sbjct: 356 NALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFK 415
Query: 166 PDEVAYVGVLSARTH 180
PD+V + +L A TH
Sbjct: 416 PDKVTLIAILCACTH 430
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 89/175 (50%), Gaps = 24/175 (13%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ +++F M KD++S+ +++ G + + AR+ FD+M ERD V W T++DGY++
Sbjct: 176 YAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGE 235
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A LF+++ N++ + ++++ G +E+ + DK KN +
Sbjct: 236 MSQAFNLFEKMPERNVV----SWSTMVSGYCKTGDMEMA---RMLFDKMPFKNLV----- 283
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT +I G A G +A +++QM A +KPD+ + +L+A
Sbjct: 284 ------------TWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAA 326
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ ++S + Q+++A F+Q+ + + L+ T+I +++ ++ +A F +
Sbjct: 52 HNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFD 111
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+Q + + D FT +L A G L + I +++K D+F N+LID Y KC +
Sbjct: 112 MQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGL 171
Query: 133 -----------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
+W +MI GL +G+ +A +F +M
Sbjct: 172 LGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +VD A F++M RD V W M+ G +A+ LF ++Q
Sbjct: 357 ALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKP 416
Query: 81 DEFTIVSILTARANLGALELG 101
D+ T+++IL A + G ++ G
Sbjct: 417 DKVTLIAILCACTHAGFVDQG 437
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ +++GY+ + +++ AR FD+ P +D V W MI GY+ ++
Sbjct: 195 KLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQ 254
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALI 124
AL LF E+ + + DE T++S+L+A A+LG LE G+ + + + + K GNALI
Sbjct: 255 ALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALI 314
Query: 125 DMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +K +W ++IVG+A+ G+G ++L +F M R I P+E+
Sbjct: 315 DMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEI 374
Query: 170 AYVGVLSARTH 180
+VGVL A +H
Sbjct: 375 TFVGVLVACSH 385
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++A FD + D V W+++I GY R + A LF E+ +++ I T
Sbjct: 159 LNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMI----TG 214
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151
G +E + D+ VK+ + +W MI G + G +
Sbjct: 215 YVKQGEMESA---RMLFDEAPVKDVV-----------------SWNAMIAGYVVCGLSKQ 254
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
AL++F++M RA + PDEV + +LSA
Sbjct: 255 ALELFNEMCRAGVFPDEVTLLSLLSA 280
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V + A Q F Q+P+ D ++ MI G + A++L+ E+ +
Sbjct: 46 TSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVK 105
Query: 80 GDEFTIVSILTAR-----ANLGALELGEWIKTYIDKNK-VKN----------DIFAGNAL 123
GD +T +L A N G+ G ++ N V+N D+ +L
Sbjct: 106 GDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSL 165
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
D CK V W+++I G A G+ A +F++M
Sbjct: 166 FDDSCKGDV-VAWSSLIAGYARRGDLKVARKLFNEM 200
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 29 REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
+E +D+ F + ++D + W ++I G +E+L+LF+ +Q + I +E T V +
Sbjct: 324 KESLDV----FWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGV 379
Query: 89 LTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
L A ++ G ++ G ++ + K++ +I ++DM
Sbjct: 380 LVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDM 418
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 109/191 (57%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ +DV+S+ ++S + Q+ AR F+ MP++ V WT ++ GY F
Sbjct: 174 KVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSG 233
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+ +Q D+ +IV++L A A LGALELG WI Y +++++ + + NAL++
Sbjct: 234 AVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVE 293
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEV 169
MY KC +W+TM+ GLA G +A+ +F++M R ++KP+ +
Sbjct: 294 MYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGI 353
Query: 170 AYVGVLSARTH 180
+VG+LSA +H
Sbjct: 354 TFVGLLSACSH 364
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 53/196 (27%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-------QTSNIMGDEFTIVS 87
A + F Q+ E + L MI Y + +R +A+T++ + S GD FT
Sbjct: 64 ATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPF 123
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------- 130
+L A L AL+LG+ + ++ ++ +++ N+LI+MY +
Sbjct: 124 LLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERD 183
Query: 131 -----------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161
+WT ++ G +G+ A++ F M
Sbjct: 184 VVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQM 243
Query: 162 ASIKPDEVAYVGVLSA 177
+PD+V+ V VL A
Sbjct: 244 EGFEPDDVSIVAVLPA 259
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 110/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +++K+ +++ ++ GY+ +VD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 120 VFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEA 179
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D +++ L A ANLGAL G W+ ++ KN++ N+LID+
Sbjct: 180 LAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDL 239
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +G+ ++L F +M KPD V +
Sbjct: 240 YCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTF 299
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 300 TGALTACSH 308
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+ +Q D T LTA
Sbjct: 246 VEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTA 305
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + + ++ I L+D+Y + +G +
Sbjct: 306 CSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSR----------------AGRLE 349
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+AL + M +KP+EV +L+A RTH
Sbjct: 350 EALKVVESM---PMKPNEVVIGSLLAACRTH 377
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M +D++ + +++ GY ++D AR F++MPER+ + W+ +IDG++R +E
Sbjct: 235 ELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKE 294
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL FQ + I D V ++A A LGALE G W+ +Y++K KV +D+ ALID
Sbjct: 295 ALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALID 354
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MIVGL G G A+ +F +M + D+++
Sbjct: 355 MYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLS 414
Query: 171 YVGVLSARTH 180
+ +L+A TH
Sbjct: 415 LLAMLTACTH 424
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 34 IARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+A F ++PE RD W T I + R R AL F +++ + D +T ++L
Sbjct: 63 LADAVFARLPEPAARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCGVRPDAYTFPAVLK 121
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---CTVK-------------- 133
A G + + + D+F NALI YC+ C
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDL 181
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G A ++F +M
Sbjct: 182 VSWNSMVAGYVGCGEMGLAQELFDEM 207
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V+ TA+++ Y +D AR+ FD MP +D++ W MIDGY + R EA
Sbjct: 187 LFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEA 246
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALID 125
L LF+ + S + DE I+ L+A A LG E G W+ +Y+ + +V+ + G ALID
Sbjct: 247 LRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALID 306
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC W MI G A+ G+ KAL+MFSQ+ + P ++
Sbjct: 307 MYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDIT 366
Query: 171 YVGVLSARTHN 181
++G+L+A +H+
Sbjct: 367 FIGLLNACSHS 377
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A F+ + ++D V+W MI+GY R+AL +F ++++ +
Sbjct: 302 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T + +L A ++ G ++ G ++ ++ ++ + I ++D+
Sbjct: 362 PTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL------------ 409
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A + M +I PD V +V +L+A R H
Sbjct: 410 ----LGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAACRLH 445
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V+ TA+++ Y +D AR+ FD MP +D++ W MIDGY + R EA
Sbjct: 186 LFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEA 245
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALID 125
L LF+ + S + DE I+ L+A A LG E G W+ +Y+ + +V+ + G ALID
Sbjct: 246 LRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALID 305
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC W MI G A+ G+ KAL+MFSQ+ + P ++
Sbjct: 306 MYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDIT 365
Query: 171 YVGVLSARTHN 181
++G+L+A +H+
Sbjct: 366 FIGLLNACSHS 376
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ A F+ + ++D V+W MI+GY R+AL +F ++++ +
Sbjct: 301 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ T + +L A ++ G ++ G ++ ++ ++ + I ++D+
Sbjct: 361 PTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDL------------ 408
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A + M +I PD V +V +L+A R H
Sbjct: 409 ----LGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAACRLH 444
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M +DV+S+T ++ Y ++ A FD +P +D V WT M+ GY +
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQN 253
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIF 118
R +EAL FQ++Q + DE T+ +++A A LGA++ WI+ +++ ++
Sbjct: 254 GRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVV 313
Query: 119 AGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G+ALIDMY KC F++++MI+G A+ G AL +F ML+
Sbjct: 314 VGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTE 373
Query: 164 IKPDEVAYVGVLSARTH 180
I+P++V ++G+LSA +H
Sbjct: 374 IRPNKVTFIGILSACSH 390
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 47/186 (25%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + LWT MI GY E+ + ++ + FT ++ A +
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 99 ELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT----- 135
+LG+ + I +D++ GN++ID+Y KC V +T
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 136 ------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
WT M+ G A +G +AL+ F +M ++ DEV
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 172 VGVLSA 177
GV+SA
Sbjct: 279 AGVISA 284
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
FG N V+ +A++ Y D A + F+ M ER+ +++MI GY R AL
Sbjct: 306 FGPSGN--VVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSAL 363
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF ++ + I ++ T + IL+A ++ G +E G + ++K F G A +
Sbjct: 364 QLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK-------FFGVAPSPDH 416
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
C V L +G ++ALD+ M ++P+ + +L A R H
Sbjct: 417 YACMVDL--------LGRAGCLEEALDLVKTM---PMEPNGGVWGALLGACRIH 459
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F KDV+ +T +V GY ++ AR FD+MPER+ + W+ M+ Y RV+ FRE
Sbjct: 168 LFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREV 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+++Q NI+ ++ I S+LTA A+LGA+ G W+ +Y + + ++ AL+DM
Sbjct: 228 LCLFRQMQKKNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDM 287
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC W MI G A++GN K+L++F +M+ + + E +
Sbjct: 288 YSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATF 347
Query: 172 VGVLSARTH 180
V +L+A TH
Sbjct: 348 VSILAACTH 356
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ + I TA+V Y ++ A + F+ + +D W MI G+ ++L LF +
Sbjct: 275 DSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDK 334
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+ S E T VSIL A + +E G
Sbjct: 335 MIASGTQATEATFVSILAACTHAKMVERG 363
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + ++F ++DV+SY A+V G++ + AR+ FD MP RD V W ++I GY +
Sbjct: 188 LNYACQVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQG 247
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA+ LF + + D +VS L+A A LG LE G+ I YI KN+++ D F
Sbjct: 248 SYCNEAIGLFDLMMGLKLEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLS 307
Query: 121 NALIDMYCK-----CTVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
L+D Y K +K TW M++G+A+ GN L+ FS+M+ A IK
Sbjct: 308 TGLVDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIK 367
Query: 166 PDEVAYVGVLSARTH 180
PD ++++GVL +H
Sbjct: 368 PDGISFLGVLVGCSH 382
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D S++ ++ GY R + AR+ FD+MP ++ V WT MI+GY + R +E+
Sbjct: 201 VFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKES 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++LF+E++ I D T+V ++++ + +G+ L W+ Y+D+ +++ + AL+DM
Sbjct: 261 ISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDM 320
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ KC + +T +I GLA G+ AL +F +M +++PD + +
Sbjct: 321 HAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITF 380
Query: 172 VGVLSARTH 180
VGVL+A +H
Sbjct: 381 VGVLTACSH 389
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 24/168 (14%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
++ D +S+ +++ + V A F MP R V W M+ Y+ F A +
Sbjct: 142 SIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLV 201
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F E+ T + IV + A EL DK KN +
Sbjct: 202 FDEMPTRDSSSWSVLIVGYCKRGSMQSAREL-------FDKMPGKNLV------------ 242
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT MI G A G +++ +F ++ I+PD VGV+S+
Sbjct: 243 -----TWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISS 285
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+N+ V+ TA+V + V+ A CF ++ + D +T +I G AL +F+
Sbjct: 309 RNEKVL--TALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFE 366
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
++ + D T V +LTA ++ G +++G
Sbjct: 367 RMRAQAVRPDPITFVGVLTACSHAGLVDMG 396
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + +V+S++ ++SGY VD AR FD+ PE+D +W MI GY++ + F+E+
Sbjct: 164 VFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKES 223
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALID 125
L LF+ +Q ++I+ DE VSIL+A A+LGALE+G WI ++++ K V + +L+D
Sbjct: 224 LYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLD 283
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC K W MI G+A+ G+G AL +F M + +KPD++
Sbjct: 284 MYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDIT 343
Query: 171 YVGVLSARTHN 181
++ V +A +++
Sbjct: 344 FIAVFTACSYS 354
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 46/199 (23%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
+ E + A + F+Q+ ++ T+I +L N+F+ AL +F ++ S + D +TI
Sbjct: 53 HHESLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPY 112
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC---------------KCTV 132
+L A G+ I Y K + DI+ GN+L+ MYC
Sbjct: 113 VLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLN 172
Query: 133 KFTWTTMIVGLAISGNGDKA-------------------------------LDMFSQMLR 161
+W+ MI G A G+ D A L +F M
Sbjct: 173 VVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQL 232
Query: 162 ASIKPDEVAYVGVLSARTH 180
I PDE +V +LSA H
Sbjct: 233 TDIVPDESIFVSILSACAH 251
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 109/183 (59%), Gaps = 16/183 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+SYT +++ Y+ +D+AR FD++ ++D VLW M+ Y++ EAL LF+++
Sbjct: 245 DVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMD 304
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKC--- 130
++ ++ DE T+VS+L A A++ L+ + +I++N V+ D+F ALI MY KC
Sbjct: 305 SAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSV 364
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
T FTWT MI GLA +G G++AL MF++M I+P+E V VL+A
Sbjct: 365 EEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTAC 424
Query: 179 THN 181
H+
Sbjct: 425 IHS 427
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 49/188 (26%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT--ARANLG 96
FD+MP+RD W +++ Y N F E + LF+++ + D+ ++V +L+ A+A +
Sbjct: 134 FDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQME 193
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------TVKFT--- 135
LE G + Y+ K + NAL++ Y KC V +T
Sbjct: 194 GLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTILI 253
Query: 136 --------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
W M+ + ++ALD+F +M A + PDE
Sbjct: 254 NAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDEN 313
Query: 170 AYVGVLSA 177
V VL A
Sbjct: 314 TMVSVLLA 321
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV TA+++ Y V+ A F +M D WT MI+G EAL++F +
Sbjct: 346 QDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRM 405
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ I +E T+VS+LTA + G ++ G + K+ + K++ + LID+
Sbjct: 406 ENQGIRPNESTLVSVLTACIHSGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDL 459
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
IF M KD++S+ +++S YI E ++ A F +MP ++ + W TM+ G+L+ + E
Sbjct: 168 SIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAE 227
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF E++T+N + D T+ +L+A A+ G+L+ G + Y N + + ALID
Sbjct: 228 VLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALID 287
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC VK + W +I GLA+ G+G AL++F++M + +PD++
Sbjct: 288 MYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDIT 347
Query: 171 YVGVLSARTHN 181
++G+LSA +H+
Sbjct: 348 FIGLLSACSHS 358
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 17/181 (9%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-- 70
+ V TA+++ Y + V A + F++MP +D V W +++D Y ++ +AL +F
Sbjct: 82 SSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNS 141
Query: 71 ---QEIQTSNIMGDEF-TIVSILTARA---NLGALELGEW---IKTYIDKNKVKNDIFAG 120
+++ + NIM + +I L+AR+ N+ ++ W I YI ++ A
Sbjct: 142 MPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMER---AC 198
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ +M K + TW TM+ G + + LD+F +M + PD + GVLSA H
Sbjct: 199 DLFREMPAKNII--TWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAH 256
Query: 181 N 181
+
Sbjct: 257 S 257
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F KD++S+ +++ Y R + +AR+ FDQ+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--DIF 118
AL LF+++Q D T++S+L+A A+ G L++G+ + + + +N +
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC ++K TW +++ GLA+ G+ +++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 164 IKPDEVAYVGVLSARTH 180
++PDE+ +V VL A +H
Sbjct: 344 VRPDEITFVAVLIACSH 360
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI----QTSNIMGDEFTIVSILTARAN 94
FDQ+P D ++ T+I G R+A++L+ + + D+ T +L A
Sbjct: 35 FDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTA 94
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
+GA + G + ++ K ++D F NALI M+ C W+ M
Sbjct: 95 MGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAM 154
Query: 140 IVGLAISGNGDKALDMFSQ 158
I G A G+ A D+F +
Sbjct: 155 ITGCARRGDIGAARDLFDE 173
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ A++ Y + A + F M ++D W +++ G E++ +F+++
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 76 SNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ DE T V++L A ++ G ++ G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLK 401
Query: 128 --------CKCTV-KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
KC W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F KD++S+ +++ Y R + +AR+ FDQ+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--DIF 118
AL LF+++Q D T++S+L+A A+ G L++G+ + + + +N +
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC ++K TW +++ GLA+ G+ +++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 164 IKPDEVAYVGVLSARTH 180
++PDE+ +V VL A +H
Sbjct: 344 VRPDEITFVAVLIACSH 360
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI----QTSNIMGDEFTIVSILTARAN 94
FDQ+P D ++ T+I G R+A++L+ + + D+ T +L A
Sbjct: 35 FDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTA 94
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
+GA + G + ++ K ++D F NALI M+ C W+ M
Sbjct: 95 MGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAM 154
Query: 140 IVGLAISGNGDKALDMFSQ 158
I G A G+ A D+F +
Sbjct: 155 ITGCARRGDIGAARDLFDE 173
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ A++ Y + A + F M ++D W +++ G E++ +F+++
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 76 SNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ DE T V++L A ++ G ++ G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLK 401
Query: 128 --------CKCTV-KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
KC W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F KD++S+ +++ Y R + +AR+ FDQ+PERD V W MI GY+R
Sbjct: 164 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 223
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--DIF 118
AL LF+++Q D T++S+L+A A+ G L++G+ + + + +N +
Sbjct: 224 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 283
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC ++K TW +++ GLA+ G+ +++DMF +ML+
Sbjct: 284 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 343
Query: 164 IKPDEVAYVGVLSARTH 180
++PDE+ +V VL A +H
Sbjct: 344 VRPDEITFVAVLIACSH 360
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI----QTSNIMGDEFTIVSILTARAN 94
FDQ+P D ++ T+I G R+A++L+ + + D+ T +L A
Sbjct: 35 FDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTA 94
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
+GA + G + ++ K ++D F NALI M+ C W+ M
Sbjct: 95 MGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAM 154
Query: 140 IVGLAISGNGDKALDMFSQ 158
I G A G+ A D+F +
Sbjct: 155 ITGCARRGDIGAARDLFDE 173
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ A++ Y + A + F M ++D W +++ G E++ +F+++
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 76 SNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ DE T V++L A ++ G ++ G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLK 401
Query: 128 --------CKCTV-KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
KC W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L++F +DV++Y ++ G + ++ AR+ FD MP RD V W ++I GY ++N
Sbjct: 171 ALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHC 230
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
REA+ LF E+ + D IVS L+A A G + G+ I Y + ++ D F L
Sbjct: 231 REAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGL 290
Query: 124 IDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+D Y KC FTW MI GLA+ GNG+ +D F +M+ + IKPD
Sbjct: 291 VDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Query: 169 VAYVGVLSARTHN 181
V ++ VL +H+
Sbjct: 351 VTFISVLVGCSHS 363
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 19/200 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + +F M ++ I++ A++ Y +VD A + F MP RD V W T++ GY
Sbjct: 167 LAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVA 226
Query: 61 NRFREALTLFQEIQTSN---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R REAL LF+++ + + + + T+ +IL A A G LE G W+ YI++N++ +D
Sbjct: 227 GRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDG 286
Query: 118 FAGNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ LIDMYCKC F+WTT+I GLA+ G AL MF M
Sbjct: 287 YLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQD 346
Query: 162 ASIKPDEVAYVGVLSARTHN 181
I PD+V VGVL+A H
Sbjct: 347 NGICPDDVTLVGVLNACAHG 366
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 19/164 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y D AR+ FD+MPE+ V T M ++ + +A+ +F ++ +
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109
Query: 80 GDEFTIVSILTARANLGA----LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----- 130
D + L A G+ G+ I I + ++ D+F LI +Y +C
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169
Query: 131 ----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW M+ A G D A ++F M R +
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDV 213
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 26 YINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
Y +D A Q F++ P +RD WTT+I G R +AL +F +Q + I D+ T
Sbjct: 296 YCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVT 355
Query: 85 IVSILTARANLGALELG 101
+V +L A A+ G ++ G
Sbjct: 356 LVGVLNACAHGGLVDEG 372
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D +S+ ++SG++ Q+ AR F+++ ++ WT ++ GY R+ A
Sbjct: 148 VFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVA 207
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+ +Q +I DE ++VS+L A A LGALELG+WI Y DK DI NALI++
Sbjct: 208 LEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEV 267
Query: 127 YCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y K +W+TMIVGLA G +A+++F +M +A ++P+ + +
Sbjct: 268 YAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITF 327
Query: 172 VGVLSARTH 180
VG+LSA H
Sbjct: 328 VGLLSACAH 336
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 21/169 (12%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D+ A++ Y R +D R+ F +M ERD + W+TMI G R REA+ LFQE+
Sbjct: 256 RDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEM 315
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
Q + + + T V +L+A A+ G L G Y + + ++I G ++ Y C V
Sbjct: 316 QKAKVEPNIITFVGLLSACAHAGLLNEG---LGYFESMERDDNIEPG---VEHY-GCLVN 368
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA--RTH 180
L +SG D+AL++ +M +KPD + G+LS+ R+H
Sbjct: 369 L--------LGLSGRLDQALELIKKM---PMKPDSDIW-GLLSSSCRSH 405
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 46/226 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG T +F M +DVIS+ I++GY ++D A++ FD+MPER+ V W +M+ G+++
Sbjct: 82 MGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKC 141
Query: 61 NRFREALTLFQEIQTSNIMG-------------------------------DEFTIVSIL 89
EA LF E+ +++ E T+VS+L
Sbjct: 142 GNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 201
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF--------- 134
+A A+LGAL+ G + TYI+ N+++ + G AL+DMY KC T F
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W T+I G+AI G+ +A +F +M AS++P+++ +V +LSA +H
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSH 307
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F ++DV+S+ A++ GY+ R ++ R FD+M RD + W T+I+GY V
Sbjct: 51 LGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIV 110
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA LF E+ N++ + S+L+ G +E A
Sbjct: 111 GKIDEAKRLFDEMPERNLV----SWNSMLSGFVKCGNVEE------------------AF 148
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+M C+ V +W +M+ A G ++AL +F QM +KP E V +LSA H
Sbjct: 149 GLFSEMPCRDVV--SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 206
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 49/83 (59%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A Q F+ M +D + W T+I G +EA LF+E++ +++
Sbjct: 233 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVE 292
Query: 80 GDEFTIVSILTARANLGALELGE 102
++ T V++L+A ++ G ++ G+
Sbjct: 293 PNDITFVAMLSACSHAGMVDEGQ 315
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 102/175 (58%), Gaps = 15/175 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y+ E + +Q FD++PE+D V WT++I G ++ +E L LF ++Q+S I
Sbjct: 181 ALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEP 240
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
D + S+L+ARA+ GAL+ G ++ YID +K DI G A++DMY KC
Sbjct: 241 DGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIF 300
Query: 133 -------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW M+ GLA+ G+G KAL +F +M+R ++P+EV ++ L+A H
Sbjct: 301 NVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCH 355
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +++A Q F+ MP ++ + W M++G ++AL LF+E+ +
Sbjct: 281 TAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMR 340
Query: 80 GDEFTIVSILTARANLGALELG----EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+E T + LTA + G + G W+K+ + + + ++D+ C+
Sbjct: 341 PNEVTFLVTLTACCHCGFVGEGRRYFHWMKS--QQYNLPPRLEHYGCMVDLLCR 392
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 51/180 (28%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ ++V Y +D A + FD+M RD V WT +I ++
Sbjct: 110 DIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVIYPGIK--------------- 154
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
G L LG+ I I + + NAL+DMY KC
Sbjct: 155 ---------------------GYLILGKGIHGLIIERGFGLGLEVSNALMDMYVKCESLP 193
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+WT++I G+ + L++F + + I+PD + VLSAR
Sbjct: 194 EEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSARA 253
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 108/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F M K+ ++ ++ GY ++ A F QM ERD + WTTM++ Y +
Sbjct: 92 MSSARRLFDMMPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQN 151
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+F EAL +F ++ + I DE T+ ++++A A+LGAL+LG+ I Y+ +N D++ G
Sbjct: 152 KKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIG 211
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
++LIDMY KC F W ++I GLA G +AL+MF +M R IK
Sbjct: 212 SSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIK 271
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++ VL+A H
Sbjct: 272 PNGVTFISVLNACAH 286
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 24/165 (14%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V TA+V Y ++ +++ FD+MPERD W TM+ R+ A LF +
Sbjct: 45 VFVQTALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMPE 104
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
N +++ + L LE E++ + + + + +
Sbjct: 105 KNTAAWN----TLIYGYSKLRDLESAEFLFSQMHERDI--------------------IS 140
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
WTTM+ A + +AL +F+QM++ I PDEV V+SA H
Sbjct: 141 WTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAH 185
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++++ Y +D + F ++ E++ W ++I+G +EAL +F+++
Sbjct: 207 DVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMG 266
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
I + T +S+L A A+ G +E G
Sbjct: 267 REKIKPNGVTFISVLNACAHAGLVEEG 293
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ G ++ ++ A++SGY+ +VD AR+ FD M +D W+ +I GY + EA
Sbjct: 148 VLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEA 207
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LFQ++ S+I+ +E +VS+L+A LG L G WI YIDK +V ALIDM
Sbjct: 208 LALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDM 267
Query: 127 YCK-----CTVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y K C TW MI AI G+ K +F +ML I+P++V +
Sbjct: 268 YAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIF 327
Query: 172 VGVLSARTH 180
V +LSA +H
Sbjct: 328 VAILSACSH 336
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ F +M RD V W MI + + LF E+ I
Sbjct: 262 TALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIR 321
Query: 80 GDEFTIVSILTARANLGALELG 101
++ V+IL+A ++ G +E G
Sbjct: 322 PNKVIFVAILSACSHAGCVEEG 343
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 48/222 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYV------------------ 48
+F M N+DV+S+ ++++GY+ ++++A + FD+MPERD V
Sbjct: 166 VFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELA 225
Query: 49 -------------LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95
WT+MI Y++ +AL LF+E+ + + D IVS+L+A A+L
Sbjct: 226 EKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADL 285
Query: 96 GALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKC-----------TVKF-----TWTT 138
G +E G+W+ Y+ NK++ + F G+ALIDMY KC ++ W +
Sbjct: 286 GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNS 345
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
MI GLAI G +ALD+F +M R I+P+E+ ++G+LS +H
Sbjct: 346 MISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSH 387
Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSIL 89
+D A F ++ + ++ +I G+ + E+L L+ + + + G EF+I S+L
Sbjct: 57 LDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVL 116
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF--------------- 134
A L A + G + + K + D F GN+++ MY + F
Sbjct: 117 KACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMY----IDFGEIELARRVFDRMPN 172
Query: 135 ----TWTTMIVGLAISGNGDKALDMFSQM 159
+W +MI G +G + A ++F +M
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELASELFDEM 201
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 24 SGYINREQVDIARQC---------FDQMPERDYV-LWTTMIDGYLRVNRFREALTLFQEI 73
SG+I +D+ +C F + R + W +MI G REAL +F E+
Sbjct: 307 SGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEM 366
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMY 127
+ +I +E T + +L+ ++ G +E G+ + ++ +K K+ I +ID++
Sbjct: 367 ERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLF 421
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+S+ +++G+ ++V+ AR FDQMP R+ V WT +IDGY + E
Sbjct: 255 KVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAE 314
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
ALTL + + I E +++++ A +NLG + +GE + Y +K + +D+ GN+LID
Sbjct: 315 ALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLID 374
Query: 126 MYCKC-----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+Y K ++K +WT++I G A+ G +AL++F++M RA IKP+ +
Sbjct: 375 LYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRI 434
Query: 170 AYVGVLSARTH 180
++ V++ +H
Sbjct: 435 TFLSVINVCSH 445
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 21/170 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV +++ Y V + + FD+M +R + V WT++I G+ EAL LF E+
Sbjct: 365 DVRVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEM 424
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + I + T +S++ ++ G ++ G + K+ + + + +I +IDM +
Sbjct: 425 RRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGR 484
Query: 133 KFTWTTMIVGLAISGN-------------------GDKALDMFSQMLRAS 163
+I GL + N G++A+ M S + R S
Sbjct: 485 LCEAEQIIEGLPMEVNVTVWRILLGCFSKYGEVEMGERAIKMISDLERES 534
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 113/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+S+ +++G+ ++V+ AR FDQMP R+ V WT +IDGY + E
Sbjct: 255 KVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAE 314
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
ALTL + + I E +++++ A +NLG + +GE + Y +K + +D+ GN+LID
Sbjct: 315 ALTLLRHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLID 374
Query: 126 MYCKC-----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+Y K ++K +WT++I G A+ G +AL++F++M RA IKP+ +
Sbjct: 375 LYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRI 434
Query: 170 AYVGVLSARTH 180
++ V++ +H
Sbjct: 435 TFLSVINVCSH 445
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 21/170 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV +++ Y V + + FD+M +R + V WT++I G+ EAL LF E+
Sbjct: 365 DVRVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEM 424
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + I + T +S++ ++ G ++ G + K+ + + + +I +IDM +
Sbjct: 425 RRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDMLGRAGR 484
Query: 133 KFTWTTMIVGLAISGN-------------------GDKALDMFSQMLRAS 163
+I GL + N G++A+ M S + R S
Sbjct: 485 LCEAEQIIEGLPMEVNVTVWRILLGCFSKYGEVEMGERAIKMISDLERES 534
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 18/188 (9%)
Query: 11 MKNKD-VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
+ +KD V S+ A++SG++ ++ ARQ FD+MPERD W++MI GY + + AL L
Sbjct: 376 LGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQL 435
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F E+ + +E T+VS+ +A A LG L G W YI N + + ALIDMY K
Sbjct: 436 FHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAK 495
Query: 130 C---TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
C T+ W +I GLA+ G+ + +L +FSQ+ R IKP+ + ++
Sbjct: 496 CGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFI 555
Query: 173 GVLSARTH 180
GVLSA H
Sbjct: 556 GVLSACCH 563
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 46/223 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F + ++V+++ +++GY VD+AR F+++P +D V W T+IDGY+++
Sbjct: 235 LGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQI 294
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV------- 113
R EAL +++ + + + +E IV +++A A+ G+ I +
Sbjct: 295 ERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQ 354
Query: 114 ------------------------KNDIFAGNALIDMYCKCTV---------------KF 134
K+ + + NALI + + + F
Sbjct: 355 ATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVF 414
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++MI G + + D AL +F +M+ ++P+E+ V V SA
Sbjct: 415 SWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSA 457
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F T D +S +++GY+ +D AR F++MP + V +TTM+ G + N + E
Sbjct: 108 SLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLE 167
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F++++ + ++ +E T+ S+++A +++G + + K ++ L+
Sbjct: 168 AIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVH 227
Query: 126 MYCKCT------VKF---------TWTTMIVGLAISGNGD-------------------- 150
MYC C+ V F TW M+ G + SG D
Sbjct: 228 MYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTI 287
Query: 151 -----------KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL M+ MLR + P+EV V ++SA
Sbjct: 288 IDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISA 325
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 46/145 (31%)
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------- 132
E T+VS L + ++L AL G+ I + + K+ + ++IF N+LI Y KC +
Sbjct: 52 ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111
Query: 133 -------------------------------------KFTWTTMIVGLAISGNGDKALDM 155
++TTM++GLA + +A+ +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
F M A + P+EV V+SA +H
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSH 196
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 15/184 (8%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ +++ + ++ GY+ AR FD+M +R V W TMI GY F++A+ +F+
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
E++ +I + T+VS+L A + LG+LELGEW+ Y + + ++ D G+ALIDMY KC
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 132 V---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ TW+ MI G AI G A+D F +M +A ++P +VAY+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 177 ARTH 180
A +H
Sbjct: 384 ACSH 387
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE--AL 67
T+ +++ + A + ++ +D A + F+QMP+R+ W T+I G+ + + A+
Sbjct: 55 TLAAAEILRFCA--TSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAI 112
Query: 68 TLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
TLF E+ + + + FT S+L A A G ++ G+ I K D F + L+ M
Sbjct: 113 TLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRM 172
Query: 127 YCKC 130
Y C
Sbjct: 173 YVMC 176
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A F+++P + + W+ MI+G+ + +A+ F +++ + +
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ +++LTA ++ G +E G + + + ++ I ++D+
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDL------------ 420
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG D+A + +L IKPD+V + +L A
Sbjct: 421 ----LGRSGLLDEAEEF---ILNMPIKPDDVIWKALLGA 452
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D S++ ++ GY + AR+ FD+MP ++ V WT MI+GY + +E+
Sbjct: 201 VFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKES 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E++ + I D T+V +++A + +G+ EL W+ +Y+DK +++ + AL+DM
Sbjct: 261 LALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDM 320
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ KC + +T +I GLA G+ AL +F +M S+ PD + +
Sbjct: 321 HAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITF 380
Query: 172 VGVLSARTH 180
VGVL+A +H
Sbjct: 381 VGVLTACSH 389
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 15/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DVI T +V Y V IARQ FD+MP RD V W MI + + +EAL + +
Sbjct: 137 DADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQ 196
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+++ N+ D FT+V ++++ A+LGAL +G + + +N + ++ GNALIDMY KC
Sbjct: 197 MRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGS 256
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW +MIVG + G G +A+ F QML A I+P+ V ++G+L
Sbjct: 257 LDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCG 316
Query: 178 RTHN 181
+H
Sbjct: 317 CSHQ 320
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D A FD+M +D W +MI GY R EA+ FQ++ + I
Sbjct: 246 ALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQP 305
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L ++ G ++ G ++ K ++K ++ L+D+Y +
Sbjct: 306 NPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGR---------- 355
Query: 140 IVGLAISGNGDKALDMFS 157
+G DKAL++ S
Sbjct: 356 ------AGKLDKALEIVS 367
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 111/188 (59%), Gaps = 15/188 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F +K K+ S+ ++ G++ ++ A + FD+MPER + WT +I+G++++ F EAL
Sbjct: 71 FDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEAL 130
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+++Q S + D TIV++L+A ANLGAL LG W+ Y K +++++ N+LID+Y
Sbjct: 131 EWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLY 190
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+C +W ++I GLA +G ++AL+ F M + KP++V++
Sbjct: 191 SRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFT 250
Query: 173 GVLSARTH 180
G L+A +H
Sbjct: 251 GALTACSH 258
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILT 90
+++ARQ F++M ER V W ++I G L N F EAL F +Q ++ + LT
Sbjct: 196 IELARQVFEKMGERTLVSWNSIIGG-LAANGFTEEALEHFDLMQKQGFKPNDVSFTGALT 254
Query: 91 ARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG 149
A ++ G ++ G ++ +K+ I ++D+Y + +G
Sbjct: 255 ACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSR----------------AGRL 298
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ A+ + M +KP+EV +L+A
Sbjct: 299 EDAMSVVQNM---PMKPNEVVVGSLLAA 323
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 49/146 (33%)
Query: 81 DEFTIVSILTARANLGAL--ELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKC------- 130
+ T +++L+ A+L + LG + Y K + ++ G AL+DMY KC
Sbjct: 9 NHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSR 68
Query: 131 ------TVK--FTWTTMIVGLAISG------------------------NG-------DK 151
VK F+W TMI G +G NG ++
Sbjct: 69 LCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEE 128
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
AL+ F +M + ++PD V V VLSA
Sbjct: 129 ALEWFRKMQVSKVEPDRVTIVTVLSA 154
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 29/191 (15%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M N+DV+S+ ++++GY+ ++++A + FD+MPERD V MIDGY +E
Sbjct: 166 VFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY-----GKEM 220
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALID 125
L+L + D IVS+L+A A+LG +E G+W+ Y+ NK++ + F G+ALID
Sbjct: 221 LSL-------GLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALID 273
Query: 126 MYCKC-----------TVKF-----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC ++ W +MI GLAI G +ALD+F +M R I+P+E+
Sbjct: 274 MYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEI 333
Query: 170 AYVGVLSARTH 180
++G+LS +H
Sbjct: 334 TFLGLLSTCSH 344
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 44/186 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSIL 89
+D A F ++ + ++ +I G+ + E+L L+ + + + G EF+I S+L
Sbjct: 57 LDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVL 116
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF--------------- 134
A L A + G + + K + D F GN+++ MY + F
Sbjct: 117 KACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMY----IDFGEIELARRVFDRMPN 172
Query: 135 ----TWTTMIVGLAISGNGDKALDMF-------------------SQMLRASIKPDEVAY 171
+W +MI G +G + A ++F +ML ++PD A
Sbjct: 173 RDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAI 232
Query: 172 VGVLSA 177
V VLSA
Sbjct: 233 VSVLSA 238
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 24 SGYINREQVDIARQC---------FDQMPERDYV-LWTTMIDGYLRVNRFREALTLFQEI 73
SG+I +D+ +C F + R + W +MI G REAL +F E+
Sbjct: 264 SGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEM 323
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMY 127
+ +I +E T + +L+ ++ G +E G+ + ++ +K K+ I +ID++
Sbjct: 324 ERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLF 378
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 101/182 (55%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV+++ A+V Y A + F +MP +++ V W TM+ + R EAL LFQE+
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
Q + + D+ T V+ L A A LGAL+ G W+ Y+ + D GNAL+DMY KC
Sbjct: 247 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 306
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+T+T+MI+GLA+ G G+ AL +F+ M RA + P+EV +GVL+A
Sbjct: 307 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 366
Query: 179 TH 180
H
Sbjct: 367 CH 368
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IM 79
+V Y+ R ++ AR D P RD V T M+ G+ R EA+ LF + +
Sbjct: 91 LVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCVA 150
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D + +A A +G L LG + + KV D+ A NAL+DMY KC
Sbjct: 151 IDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRW 210
Query: 131 ----TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +W TM+ A +G ++AL +F +M A+++PD+ +V L A
Sbjct: 211 FRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGA 264
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ D + A++ Y VD A + FD M RD +T+MI G R +AL+LF
Sbjct: 286 HSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFA 345
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
+Q + + +E T++ +LTA + G +E G
Sbjct: 346 GMQRAGVTPNEVTLLGVLTACCHAGLVEEG 375
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F KD++S+ +++ Y R + +AR+ FDQ+PERD V W MI GY+R
Sbjct: 194 IGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRC 253
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IF 118
AL LF+++Q D T++S+L+A A+ G L++G+ + + + +N +
Sbjct: 254 GSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVV 313
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC ++K TW +++ GLA+ G+ +++DMF +ML+
Sbjct: 314 LGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGK 373
Query: 164 IKPDEVAYVGVLSARTH 180
++PDE+ +V VL A +H
Sbjct: 374 VRPDEITFVAVLIACSH 390
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI----QTSNIMGDEFTIVSILTARAN 94
FDQ+P D ++ T+I G R+A++L+ + + D+ T +L A
Sbjct: 65 FDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTA 124
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
+GA + G + ++ K ++D F NALI M+ C W+ M
Sbjct: 125 MGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAM 184
Query: 140 IVGLAISGNGDKALDMFSQ 158
I G A G+ A D+F +
Sbjct: 185 ITGCARRGDIGAARDLFDE 203
Score = 39.3 bits (90), Expect = 0.70, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ A++ Y + A + F M ++D W +++ G E++ +F+++
Sbjct: 312 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 371
Query: 76 SNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ DE T V++L A ++ G ++ G E+ K +V+ +I ++DM
Sbjct: 372 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDM 423
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + +FG K KD IS+ +++G+ N +D+A + F P RD + W T++ GY R
Sbjct: 271 MNTAMRVFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRC 330
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F + LF ++ +S + D+ T V++++A + GAL LG+ + ++ K D F
Sbjct: 331 REFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLA 390
Query: 121 NALIDMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+ L+DMYCKC VK WT MI GLA G+G +ALD+F M +
Sbjct: 391 STLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVA 450
Query: 166 PDEVAYVGVLSARTH 180
P+ V V VLSA +H
Sbjct: 451 PNGVTLVTVLSACSH 465
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 48/205 (23%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y++ + A F +P D V M+ GY++ AL LF+++ + I
Sbjct: 157 SLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGV 216
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKC-------- 130
D++ V++L+ L LG + + + D + NAL+DMY KC
Sbjct: 217 DQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMR 276
Query: 131 -------TVKFTWTTMIVGLAISGNGDKA------------------------------- 152
+W TMI G A G D A
Sbjct: 277 VFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAV 336
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
+++F+ ML + ++PD+V V ++SA
Sbjct: 337 MELFNDMLSSRVRPDKVTAVTLISA 361
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G+ L+ GT +D + +V Y V +A F++ ++D LWT MI G
Sbjct: 376 GWVLKEHGT---QDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHG 432
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
EAL LF +Q + + T+V++L+A ++ G L+ G
Sbjct: 433 HGTEALDLFWNMQNEGVAPNGVTLVTVLSACSHAGLLDEG 472
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 108/188 (57%), Gaps = 15/188 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F +M +D++S+ +++ GY ++++AR+ FB+M +++ + W+ MIDGY +EAL
Sbjct: 231 FDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEAL 290
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+++ I D ++V ++A + LGAL+ G WI Y+ +N++ DI AL+DMY
Sbjct: 291 NLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMY 350
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +W MIVGL ++G G +AL+ F QM I D++ ++
Sbjct: 351 LKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFL 410
Query: 173 GVLSARTH 180
GVL A +H
Sbjct: 411 GVLMACSH 418
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 31/180 (17%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLR-- 59
G+ +F KD++S+ +++ GY+ +++ A+ FD+MPERD V W+ MIDGY +
Sbjct: 162 GWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKM 221
Query: 60 --VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
VNR R F + T +++ + S++ A +G +E+ I BK KN I
Sbjct: 222 GEVNRAR---VFFDSMPTRDLV----SWNSMIDGYAKVGEMEVAREI---FBKMLQKNVI 271
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ MI G A + +AL++F QML IKPD V+ VG +SA
Sbjct: 272 -----------------SWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++VS +N V+ A F Q+ + + + TM+ Y + AL + E++ ++G
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLG 108
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D +T +L A + L G ++ K D+F N LI MYC+C
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V ++ A+++G+ +D+A + F MP R+ V WTTMI GY R ++ E
Sbjct: 139 KLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGE 198
Query: 66 ALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF + Q +M + T+ SI A ANLGALE+G+ ++ Y KN +++ NA++
Sbjct: 199 ALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVL 258
Query: 125 DMYCKC--------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+MY KC +++ +W +MI+GLA+ G K L ++ QML PD+
Sbjct: 259 EMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDD 318
Query: 169 VAYVGVLSARTH 180
V +VG+L A TH
Sbjct: 319 VTFVGLLLACTH 330
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEFTIVSILT 90
+ A + P+ L+ +I Y + + + +L+ ++ + + ++ T + +
Sbjct: 32 LHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFS 91
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF--------------T 135
A +L + LG+ + T+ K+ + D+FA AL+DMY K T++ T
Sbjct: 92 ACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPT 151
Query: 136 WTTMIVGLAISGNGDKALDMFSQM 159
W M+ G A G+ D AL++F M
Sbjct: 152 WNAMMAGHARFGDMDVALELFRLM 175
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F K ++I A++ Y+ E++D+AR+ FD + RD V WT MI G ++ R EAL
Sbjct: 243 FRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEAL 302
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F +Q S + D+ + ++L+A A+LGALE G W+ YI++ ++ D+ G +++DMY
Sbjct: 303 EVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMY 362
Query: 128 CKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC T W +I G A+ G G +ALD F +M+ + + P+EV ++
Sbjct: 363 VKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFI 422
Query: 173 GVLSARTHN 181
VL A H+
Sbjct: 423 TVLGACCHS 431
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y Q AR+ FD+M ERD V WT ++ + R F EAL + E+ ++
Sbjct: 158 ALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTP 214
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
+E T+ S+L A NLG G+ + + + + + ++ GNAL+DMY KC
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT MI GL +AL++F+ M + +KPD+V VLSA
Sbjct: 275 DMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSA 326
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T++V Y+ +D A F +MP ++ W +I+G+ R REAL F +
Sbjct: 351 DVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMV 410
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S + +E T +++L A + G ++ G
Sbjct: 411 ASGLHPNEVTFITVLGACCHSGLVQEG 437
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F K ++I A++ Y+ E++D+AR+ FD + RD V WT MI G ++ R EAL
Sbjct: 243 FRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEAL 302
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F +Q S + D+ + ++L+A A+LGALE G W+ YI++ ++ D+ G +++DMY
Sbjct: 303 EVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMY 362
Query: 128 CKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC T W +I G A+ G G +ALD F +M+ + + P+EV ++
Sbjct: 363 VKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFI 422
Query: 173 GVLSARTHN 181
VL A H+
Sbjct: 423 TVLGACCHS 431
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y Q AR+ FD+M ERD V WT ++ + R F EAL + E+ ++
Sbjct: 158 ALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTP 214
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
+E T+ S+L A NLG G+ + + + + + ++ GNAL+DMY KC
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT MI GL +AL++F+ M + +KPD+V VLSA
Sbjct: 275 DMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSA 326
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T++V Y+ +D A F +MP ++ W +I+G+ R REAL F +
Sbjct: 351 DVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMV 410
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S + +E T +++L A + G ++ G
Sbjct: 411 ASGLHPNEVTFITVLGACCHSGLVQEG 437
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV S+T ++ GY D AR F+ MP ++ W +I Y + + +E
Sbjct: 283 KLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKE 342
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL +F E+Q S I DE T+VS L+A A LGA++LG WI YI + + + ++L+
Sbjct: 343 ALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLV 402
Query: 125 DMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +V+ + W+ MI GL + G G A+D+F +M A +KP+ V
Sbjct: 403 DMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSV 462
Query: 170 AYVGVLSARTH 180
+ VL A +H
Sbjct: 463 TFTNVLCACSH 473
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 47/193 (24%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ +A + F + +D V W +MI + + N +AL LF +++ N+M + T+V +L+A
Sbjct: 177 LSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSA 236
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTW 136
A LE G W+ +YI++ +K D+ NA++DMY KC F+W
Sbjct: 237 CAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSW 296
Query: 137 TTMIVGLAISGNGD-------------------------------KALDMFSQMLRASI- 164
T M+ G A G+ D +AL +F+++ + I
Sbjct: 297 TIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIA 356
Query: 165 KPDEVAYVGVLSA 177
KPDEV V LSA
Sbjct: 357 KPDEVTLVSTLSA 369
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILT 90
+D AR FDQ+P+ + W T+I Y + ++ +F ++ + ++FT ++
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FT 135
A + L A +G + K D++ N+L+ Y C + K +
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI A + AL++F +M R ++ P+ V VGVLSA
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSA 236
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G + N +IS ++V Y ++ A + F + ERD +W+ MI G R + A+
Sbjct: 390 GIVLNCHLIS--SLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAID 447
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
LF E+Q + + + T ++L A ++ G ++ G
Sbjct: 448 LFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEG 480
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF M K+ +S+ A++SGY +++ AR+ FD+MP+RD W+ M+ GY ++ E
Sbjct: 199 KIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 258
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF E+ T + M +E +VS ++A A L ALE G W+ +YI + K++ ++ G L+
Sbjct: 259 ALDLFMEMVTGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLL 318
Query: 125 DMYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W +MI GLA++G G +AL +F +M P+ +
Sbjct: 319 DMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAI 378
Query: 170 AYVGVLSARTHN 181
++ +L+ +H+
Sbjct: 379 TFIALLTGCSHS 390
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A F+ M ER+ W +MI G +EAL LF ++Q + T +++LT ++
Sbjct: 330 AAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIALLTGCSH 389
Query: 95 LGALELGEWI 104
G + G W+
Sbjct: 390 SGLITEGRWL 399
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ ++ ++ GY V+ A F+QMP +D + WTTMI Y + ++++
Sbjct: 225 KLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQD 284
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL ++ E++ + I+ DE T+ ++ +A A++GALELG+ I Y+ + D++ G+AL+D
Sbjct: 285 ALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVD 344
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K + W +I GLA+ G +KAL MF+ M R I P+ V
Sbjct: 345 MYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVT 404
Query: 171 YVGVLSARTH 180
++ +LSA TH
Sbjct: 405 FISILSACTH 414
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
F QM + ++ MI G++ FR ++ SN++ +T S++ A + A
Sbjct: 94 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVG 142
+ELG+ + +I K ++ +F AL+D Y K + F WT M+
Sbjct: 154 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSA 213
Query: 143 LAISGNGDKALDMFSQM 159
LA G+ D A +F +M
Sbjct: 214 LARVGDMDSARKLFEEM 230
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQ 71
N DV +A+V Y +D++ F ++ +++ W +I+G L V+ + E AL +F
Sbjct: 333 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG-LAVHGYAEKALRMFA 391
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKC 130
++ IM + T +SIL+A + G ++ G + ++ ++ DI ++DM K
Sbjct: 392 IMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKS 451
Query: 131 -----------TVKFT-----WTTMIVGLAISGNGDKALDMFSQML 160
+++F W ++ G + GN + A D Q++
Sbjct: 452 GYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLM 497
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+ + +++GY+ ++ A F+QMP +D + WTTMI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ I+ DE T+ ++++A A+LG LE+G+ + Y +N D++ G+AL+DMY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 176 SARTH 180
+A TH
Sbjct: 396 TACTH 400
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y ++ A F +P+++ W ++I+G +EAL +F +++
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ + T VS+ TA + G ++ G I ++ ID + +++ ++ ++ K +
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLI 440
Query: 134 FTWTTMIVGLAISGNG 149
+ +I + N
Sbjct: 441 YEALELIGNMEFEPNA 456
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 16/195 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ E+F M+ KDV S+T++V+ Y ++ A Q F MP R+ V W+ MI Y ++N+
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGN 121
EA+ LF+E+ + + + T+VS+L+A A LG L+LG WI + YI NK+ + GN
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417
Query: 122 ALIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALIDM+ KC K +W TMI+ A+ G ++A+ +F Q+ +I P
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 167 DEVAYVGVLSARTHN 181
D++ ++G+L++ +H+
Sbjct: 478 DQITFLGLLASCSHS 492
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QE 72
+ V+ A+V Y N + +D A + FD+MPERD V WTT++DGY R EA LF +
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ + + T+V+ ++A +G L G + Y+ + V + NAL+DM+ KC
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 131 -----------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
VK ++WT+M+ A G+ + A +F M R ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M ER+ V W TMI + + EA+ LF++++ NI+ D+ T + +L + ++
Sbjct: 432 ASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH 491
Query: 95 LGALELG 101
G + G
Sbjct: 492 SGLVSEG 498
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL------G 96
P + + TM+ G+LR AL LF+ + + D T V + A A G
Sbjct: 97 PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156
Query: 97 ALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMI 140
GE I K V + GNAL+ Y +WTT++
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLV 216
Query: 141 VGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
G A +G D+A +F +M + ++P+ V V +SA
Sbjct: 217 DGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA 254
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 16/195 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ E+F M+ KDV S+T++V+ Y ++ A Q F MP R+ V W+ MI Y ++N+
Sbjct: 298 YAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQ 357
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGN 121
EA+ LF+E+ + + + T+VS+L+A A LG L+LG WI + YI NK+ + GN
Sbjct: 358 PEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGN 417
Query: 122 ALIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALIDM+ KC K +W TMI+ A+ G ++A+ +F Q+ +I P
Sbjct: 418 ALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVP 477
Query: 167 DEVAYVGVLSARTHN 181
D++ ++G+L++ +H+
Sbjct: 478 DQITFLGLLASCSHS 492
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QE 72
+ V+ A+V Y N + +D A + FD+MPERD V WTT++DGY R EA LF +
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ + + T+V+ ++A +G L G + Y+ + V + NAL+DM+ KC
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 131 -----------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
VK ++WT+M+ A G+ + A +F M R ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M ER+ V W TMI + + EA+ LF++++ NI+ D+ T + +L + ++
Sbjct: 432 ASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH 491
Query: 95 LGALELG 101
G + G
Sbjct: 492 SGLVSEG 498
Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL------G 96
P + + TM+ G+LR AL LF+ + + D T V + A A G
Sbjct: 97 PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156
Query: 97 ALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMI 140
GE I K V + GNAL+ Y +WTT++
Sbjct: 157 TPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLV 216
Query: 141 VGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
G A +G D+A +F +M + ++P+ V V +SA
Sbjct: 217 DGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA 254
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 111/193 (57%), Gaps = 19/193 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDY--VLWTTMIDGYLRVNRFR 64
+F K+V +T++V+GY N V+ AR FD +PER+ V ++ M+ GY++ FR
Sbjct: 152 LFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFR 211
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK--NDIFAGNA 122
E + LF+E++ N+ + + S+L+A A++GA E G+WI Y+D+NK + ++ G A
Sbjct: 212 EGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYELELGTA 271
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LID Y KC W+ M++GLAI+ +AL++F +M + +P+
Sbjct: 272 LIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPN 331
Query: 168 EVAYVGVLSARTH 180
V ++GVL+A H
Sbjct: 332 AVTFIGVLTACNH 344
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M ++ I++ A++ Y +VD A + F MP RD V W T++ GY R RE
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230
Query: 66 ALTLFQEIQTSN---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
AL LF+++ + + + + T+ +IL A A G LE G W+ YI++N++ +D +
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRC 290
Query: 123 LIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
LIDMYCKC F+WTT+I GLA+ G AL MF M I P
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 167 DEVAYVGVLSARTHN 181
D+V VGVL+A H
Sbjct: 351 DDVTLVGVLNACAHG 365
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y D AR+ FD+MPE+ V T M ++ + +A+ +F ++ +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 80 GDEFTIVSILTARANLGA----LELGEWIKTYIDKNKVKNDIFAGNALI----------- 124
D + L A G+ G+ I + + + D+F LI
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 125 ------DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
DM + T+ TW M+ A G D A +MF M R +
Sbjct: 169 SRRVFDDMPSRSTI--TWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 26 YINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
Y +D A Q F++ P ++D WTT+I G R +AL +F +Q + I D+ T
Sbjct: 295 YCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVT 354
Query: 85 IVSILTARANLGALELG 101
+V +L A A+ G ++ G
Sbjct: 355 LVGVLNACAHGGLVDEG 371
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+ + +++GY+ ++ A F+QMP +D + WTTMI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ I+ DE T+ ++++A A+LG LE+G+ + Y +N D++ G+AL+DMY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 176 SARTH 180
+A TH
Sbjct: 396 TACTH 400
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y ++ A F +P+++ W ++I+G +EAL +F +++
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ + T VS+ TA + G ++ G I ++ ID + +++ ++ ++ K +
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLI 440
Query: 134 FTWTTMIVGLAISGNG 149
+ +I + N
Sbjct: 441 YEALELIGNMEFEPNA 456
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 68/192 (35%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
++F M ++V+S++ +VSGY + +++AR FD+MP ++ V WT M+ +
Sbjct: 236 FKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVE 295
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF +++ +++ D +VSIL A A G+L LG+ I Y+ ++ NALI
Sbjct: 296 EAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALI 355
Query: 125 DMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC +W T+I G A+ G+GDKALD F+QM PD
Sbjct: 356 DMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDA 415
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 416 VTMINVLSACTH 427
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ + ++ + + +V+ AR+ FD+M E+D V W T++DGY + E
Sbjct: 175 KVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEE 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++ G +E+ I DK KN +
Sbjct: 235 AFKLFQCMPERNVV----SWSTVVSGYCKKGDMEMARVI---FDKMPTKNLV-------- 279
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A +G ++A +F+QM AS++ D A V +L+A
Sbjct: 280 ---------TWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAA 322
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 25 GYINREQVDIARQCFD-QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
G INR A FD ++ E+D V W T+I G+ +AL F +++ D
Sbjct: 362 GCINR-----ADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAV 416
Query: 84 TIVSILTARANLGALELG 101
T++++L+A ++G +E G
Sbjct: 417 TMINVLSACTHMGFVEEG 434
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 15/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DVI T +V Y V IARQ FD+MP RD V W MI + + +EAL + +
Sbjct: 137 DADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQ 196
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+++ N+ D FT+V ++++ A+LGAL +G + + +N + ++ GNALIDMY KC
Sbjct: 197 MRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGS 256
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
FTW +MIVG + G G +A+ F QML A I+P+ V ++G+L
Sbjct: 257 LDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCG 316
Query: 178 RTHN 181
+H
Sbjct: 317 CSHQ 320
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D A FD+M +D W +MI GY R EA+ FQ++ + I
Sbjct: 246 ALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQP 305
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L ++ G ++ G ++ K ++K ++ L+D+Y +
Sbjct: 306 NPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGR---------- 355
Query: 140 IVGLAISGNGDKALDMFS 157
+G DKAL++ S
Sbjct: 356 ------AGKLDKALEIVS 367
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M ++ I++ A++ Y +VD A + F MP RD V W T++ GY R RE
Sbjct: 171 RVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCRE 230
Query: 66 ALTLFQEIQTSN---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
AL LF+++ + + + + T+ +IL A A G LE G W+ YI++N++ +D +
Sbjct: 231 ALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRC 290
Query: 123 LIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
LIDMYCKC F+WTT+I GLA+ G AL MF M I P
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 167 DEVAYVGVLSARTHN 181
D+V VGVL+A H
Sbjct: 351 DDVTLVGVLNACAHG 365
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y D AR+ FD+MPE+ V T M ++ + +A+ +F ++ +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 80 GDEFTIVSILTARANLGAL----ELGEWIKTYIDKNKVKNDIFAGNALI----------- 124
D + L A G+ G+ I + + + D+F LI
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168
Query: 125 ------DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
DM + T+ TW M+ A G D A +MF M R +
Sbjct: 169 SRRVFDDMPSRSTI--TWNAMLHQYARHGKVDTAYEMFLAMPRRDV 212
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 26 YINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
Y +D A Q F++ P ++D WTT+I G R +AL +F +Q + I D+ T
Sbjct: 295 YCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVT 354
Query: 85 IVSILTARANLGALELG 101
+V +L A A+ G ++ G
Sbjct: 355 LVGVLNACAHGGLVDEG 371
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++F +M + V++Y ++SG + VD A + FD MP D V WT +IDG+++ R
Sbjct: 125 LALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F+ + + D T+V++++A A +GAL LG W+ + + +++ ++ N+
Sbjct: 185 HDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANS 244
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C +W +MIVG A +G A+++F +M R KPD
Sbjct: 245 LIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPD 304
Query: 168 EVAYVGVLSARTH 180
V GVL+A +H
Sbjct: 305 AVTLTGVLTACSH 317
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++V +++ Y QV++A Q F + +R V W +MI G+ R +A+ LF+E
Sbjct: 236 ERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEE 295
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ D T+ +LTA ++ G E G Y D + + A ++ Y C V
Sbjct: 296 MRRQGFKPDAVTLTGVLTACSHAGLTEHG---LRYYDLMTTEYGV---AARMEHY-GCVV 348
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A+ + M ++P+EV +L+ RTH
Sbjct: 349 DL--------LGRAGRLDEAMHVVETM---PMRPNEVVLGALLAGCRTHG 387
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 66/177 (37%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++VS Y V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF+++Q + +
Sbjct: 235 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 294
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ +GAL+LG ++ Y D + + ++ N+LIDMY KC
Sbjct: 295 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 354
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
T + FTWT MI+G A++G +ALD+F+QM + P+EV ++GVL+A +H
Sbjct: 355 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 411
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQE 72
D A+++ Y + AR D P D V W T+I GY+R +AL F +
Sbjct: 127 DSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQ 186
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + DE T++++L A A GA+++G + N + + + G++L+ MY KC +
Sbjct: 187 MAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM 246
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT+MI G SG +A+D+F M A +K D+ V+S+
Sbjct: 247 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 306
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK-- 133
+N+ D +++ ++A A + +L++G K + +D F NALI+MY C
Sbjct: 87 ANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPAS 146
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W T+I G G +KAL F QM + ++ DEV + VL A
Sbjct: 147 ARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVA 205
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ +++ Y V+ A Q F + +RD WT MI G+ EAL LF ++
Sbjct: 330 KELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQM 389
Query: 74 QTSN-IMGDEFTIVSILTARANLGALELG 101
+ + +M +E + +LTA ++ G +E G
Sbjct: 390 EGEDKVMPNEVIFLGVLTACSHGGLVEQG 418
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+ + +++GY+ ++ A F+QMP +D + WTTMI GY + R+REA+ +F
Sbjct: 961 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 1020
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ I+ DE T+ ++++A A+LG LE+G+ + Y +N D++ G+AL+DMY KC
Sbjct: 1021 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 1080
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 1081 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 1140
Query: 176 SARTH 180
+A TH
Sbjct: 1141 TACTH 1145
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y ++ A F +P+++ W ++I+G +EAL +F +++
Sbjct: 1066 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 1125
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ + T VS+ TA + G ++ G I ++ ID + +++ ++ ++ K +
Sbjct: 1126 MESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLI 1185
Query: 134 FTWTTMIVGLAISGNG 149
+ +I + N
Sbjct: 1186 YEALELIGNMEFEPNA 1201
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 111/178 (62%), Gaps = 16/178 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
++++S Y QV+ AR+ FD MP+R+ V WT+MI GY ++ + +EA+ LF+++Q + +
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ +GAL+LG ++ Y D + + DI N+LIDMY KC
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 131 ---TVK---FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSARTHN 181
VK F+WT +I+G A +G +ALD+F+QM + P+E+ ++GVL++ +H
Sbjct: 355 FCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHG 412
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLF 70
+ D +++ Y + AR D P+ D V W T+I GY+ +AL F
Sbjct: 125 SSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAF 184
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ +M D+ T+++ L A A +++G+ + N + + + G++LI MY KC
Sbjct: 185 SQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKC 244
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
WT+MI G G +A+ +F M A +K D+ V+
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 176 SA 177
S+
Sbjct: 305 SS 306
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT----- 135
D +++ + L+ A + ++ +G + K + +D F N LI+MY C+ T
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 136 ------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W T+I G +G +KAL FSQM + + D+V + L A
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVA 205
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
KD+ +++ Y + A F M +RD WT +I G+ EAL LF +
Sbjct: 329 GKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQ 388
Query: 73 I-QTSNIMGDEFTIVSILTARANLGALELG 101
+ + +M +E T + +LT+ ++ G +E G
Sbjct: 389 MEEEGGVMPNEITFLGVLTSCSHGGLVEQG 418
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ ++ ++ GY V+ A F+QMP +D + WTTMI Y + ++++
Sbjct: 322 KLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQD 381
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL ++ E++ + I+ DE T+ ++ +A A++GALELG+ I Y+ + D++ G+AL+D
Sbjct: 382 ALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVD 441
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K + W +I GLA+ G +KAL MF+ M R I P+ V
Sbjct: 442 MYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVT 501
Query: 171 YVGVLSARTH 180
++ +LSA TH
Sbjct: 502 FISILSACTH 511
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
F QM + ++ MI G++ FR ++ SN++ +T S++ A + A
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 250
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVG 142
+ELG+ + +I K ++ +F AL+D Y K + F WT M+
Sbjct: 251 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSA 310
Query: 143 LAISGNGDKALDMFSQM 159
LA G+ D A +F +M
Sbjct: 311 LARVGDMDSARKLFEEM 327
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQ 71
N DV +A+V Y +D++ F ++ +++ W +I+G L V+ + E AL +F
Sbjct: 430 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG-LAVHGYAEKALRMFA 488
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKC 130
++ IM + T +SIL+A + G ++ G + ++ ++ DI ++DM K
Sbjct: 489 IMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKS 548
Query: 131 -----------TVKFT-----WTTMIVGLAISGNGDKALDMFSQML 160
+++F W ++ G + GN + A D Q++
Sbjct: 549 GYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLM 594
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +S+T ++ GY N VD AR+ FD +D +W MI GY++ N F+E
Sbjct: 161 QVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKE 220
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F+ +Q + + DE IV+IL+A A++GAL+ G WI Y+ + + + LID
Sbjct: 221 GLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLID 280
Query: 126 MYCKC----TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC K+ W MI G+A+ G+G+ A+ +F +M +A IKPD +
Sbjct: 281 MYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 171 YVGVLSA 177
++ VL+A
Sbjct: 341 FIAVLAA 347
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y +D+A+ F++M +RD V W MI G A+ LF E++ + I
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 80 GDEFTIVSILTARANLGALELG 101
D T +++L A +N G ++ G
Sbjct: 336 PDNITFIAVLAACSNSGMVDEG 357
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D A+Q FD MP ++ V W MI GY +R+ EA
Sbjct: 262 VFDRMDQKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEA 321
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+K+ + GNALID
Sbjct: 322 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALID 381
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G +AL +++ M R I+ D+
Sbjct: 382 MFAKCGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTV 441
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 442 FIAALAACAH 451
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KDV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R
Sbjct: 168 QVFDQMVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMVT 227
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A T+F + + N + I T+ G +E + +D + D+ + A++
Sbjct: 228 ARTVFDRMPSRNAVSWNLMISGYATS----GDVEAAHSVFDRMD----QKDVVSWTAMVS 279
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 280 AYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 339
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 340 TLVSVVSA 347
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V A+ F +M R + WTTMI G+ REAL ++ + I
Sbjct: 378 ALIDMFAKCGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIEL 437
Query: 81 DEFTIVSILTARANLGALELG-----EWIKTY 107
D+ ++ L A A+ G L+ G E +K Y
Sbjct: 438 DDTVFIAALAACAHGGLLQEGWSIFNEMVKQY 469
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 15/193 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+++F +M ++ V++Y +++G + V AR+ FD+MP D V WT +IDG ++ R
Sbjct: 124 LAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGR 183
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F + + D T+V+ ++A A +GAL LG W+ ++ ++++++ N+
Sbjct: 184 HDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANS 243
Query: 123 LIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C V F +W +MIVG A +G A++ F M R KPD
Sbjct: 244 LIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPD 303
Query: 168 EVAYVGVLSARTH 180
V + GVL+A +H
Sbjct: 304 TVTFTGVLTACSH 316
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y QVD ARQ F ++ +R V W +MI G+ ++ +A+ F+ ++
Sbjct: 243 SLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKP 302
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
D T +LTA ++ G + G Y D + ++ I A
Sbjct: 303 DTVTFTGVLTACSHAGLTDEG---LRYYDAMRTEHGIAA 338
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S T +++ Y ++D AR F+ M ERD V W MI GY + E
Sbjct: 197 QLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNE 256
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF+ + + + +E T++++L+A LGALE G WI +YI+ ++ ++ G ALID
Sbjct: 257 SLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALID 316
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W +MIVG A+ G AL +F +M KP ++
Sbjct: 317 MYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDIT 376
Query: 171 YVGVLSARTH 180
++G+LSA H
Sbjct: 377 FIGILSACGH 386
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ AR FD++ ++D V W +MI GY + AL LF+E+ +
Sbjct: 312 TALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHK 371
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T + IL+A + G +E G
Sbjct: 372 PTDITFIGILSACGHGGLVEEG 393
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+V ++ A++ GY + A F+QMP RD + WTTM++ Y R R++E
Sbjct: 164 LFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEV 223
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF ++ ++ DE T+ ++++A A+LGAL LG+ + Y+ D++ G++LIDM
Sbjct: 224 IALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDM 283
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F W +I GLA G ++AL MF +M R I+P+ V +
Sbjct: 284 YAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTF 343
Query: 172 VGVLSARTH 180
+ +L+A TH
Sbjct: 344 ISILTACTH 352
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ V T ++ Y V +R+ FD MPERD WTTMI ++R A LF E
Sbjct: 108 DSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDE 167
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N+ T +++ LG E E++ + +
Sbjct: 168 MPEKNVA----TWNAMIDGYGKLGNAESAEFLFNQMPARDI------------------- 204
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+WTTM+ + + + + +F ++ + PDEV V+SA H
Sbjct: 205 -ISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAH 251
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++++ Y +D+A F ++ ++ W +IDG EAL +F E++
Sbjct: 273 DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEME 332
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
I + T +SILTA + G +E G W + + + + ++D+ K +
Sbjct: 333 RKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLL 392
Query: 134 FTWTTMIVGLAISGN 148
MI + + N
Sbjct: 393 EDALEMIRNMTVEPN 407
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T +D +S N +++A F + + +++ +I G + +AL
Sbjct: 4 TNTTQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVH 63
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ + +N+M ++ S++ A L GE + ++ K+ + +F LI+ Y
Sbjct: 64 YMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYST 123
Query: 130 C---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
F WTTMI G+ A +F +M ++
Sbjct: 124 FGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNV 173
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D S++ +++GY V AR+ FD+MP ++ V T MI+GY + + + A
Sbjct: 202 VFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKAA 261
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF++++ + I D T+V +++A + +G+ EL W+ Y+D+ K++ ++ AL+DM
Sbjct: 262 LALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDM 321
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ KC + +T +I GLA G+ AL +F +M ++KPD + +
Sbjct: 322 HAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPITF 381
Query: 172 VGVLSARTH 180
VGVL+A +H
Sbjct: 382 VGVLTACSH 390
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 24/164 (14%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D +S+ +++ + V A F M R V W M+ Y+ A +F E+
Sbjct: 147 PDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVSARRVFDEM 206
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
T + S+L A G L + + DK KN +
Sbjct: 207 PTRDTAS-----WSVLIAGYCKGGLV--QNARELFDKMPSKNLV---------------- 243
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T MI G A +G AL +F + A I+PD VGV+SA
Sbjct: 244 -ARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISA 286
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + KDV+S+ I++G +++AR FDQMP RD+V W ++I Y F
Sbjct: 286 FSALTEKDVVSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVR 345
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L ++ N++ + T+ S+++A A +GAL+ G W ++ + ++K D G+ALIDMY
Sbjct: 346 DLLYDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALIDMY 405
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
CKC WTTMI G A G G KAL++F +M +A++ P+E+ +V
Sbjct: 406 CKCGSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKALELFYEM-QANVTPNEITFV 464
Query: 173 GVLSARTHN 181
VL+A +H+
Sbjct: 465 SVLAACSHS 473
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y+ +A + F QMP D V + MI G + EA+ L ++ ++
Sbjct: 165 SLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCKC-------- 130
DEFT++ +L + LG G+ + +I++ K +++ GNAL+DMY KC
Sbjct: 225 DEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHR 284
Query: 131 -----TVK--FTWTTMIVGLAISGNGDKALDMFSQM 159
T K +W T+I G A +G+ + A +F QM
Sbjct: 285 TFSALTEKDVVSWNTIIAGCAKAGDLELARTLFDQM 320
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYI------NREQVDIARQCFDQ-MPERDYVLWTTMIDGYL 58
+I G M ++I T +S I + E +D+A F+ P + ++ TMI
Sbjct: 49 QILGQMMRSNLIGQTFPMSRLIFFSAISHPENLDMALILFNHYTPYPNLYIYNTMISALS 108
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG--------ALELGEWIKTYIDK 110
A L+ + ++ I D+ T++ +L + ++ A+ LG Y+
Sbjct: 109 SAT----AQPLYNSMLSTGIGPDKHTLLYLLHSARHVSEVKQVQCHAIILGLSTYRYLQN 164
Query: 111 NKVK----NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
+ +K N +F I ++ MI G A G G +A+ + M+ +KP
Sbjct: 165 SLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 167 DEVAYVGVL 175
DE +G+L
Sbjct: 225 DEFTMLGLL 233
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++VS Y V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF+++Q + +
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ +GAL+LG ++ Y D + + ++ N+LIDMY KC
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
T + FTWT MI+G A++G +ALD+F+QM + P+EV ++GVL+A +H
Sbjct: 267 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 323
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQ 71
D A+++ Y + AR D P D V W T+I GY+R +AL F
Sbjct: 38 SDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFH 97
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + DE T++++L A A GA+++G + N + + + G++L+ MY KC
Sbjct: 98 QMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCG 157
Query: 132 V---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ WT+MI G SG +A+D+F M A +K D+ V+S
Sbjct: 158 MVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVS 217
Query: 177 A 177
+
Sbjct: 218 S 218
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D +++ ++A A + +L++G K + +D F NALI+MY C
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 134 ----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W T+I G G +KAL F QM + ++ DEV + VL A
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVA 117
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ +++ Y V+ A Q F + +RD WT MI G+ EAL LF ++
Sbjct: 242 KELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQM 301
Query: 74 QTSN-IMGDEFTIVSILTARANLGALELG 101
+ + +M +E + +LTA ++ G +E G
Sbjct: 302 EGEDKVMPNEVIFLGVLTACSHGGLVEQG 330
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 16/193 (8%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
IF M NK V+++ +IV+GY+ +VD A + F+ MPE++ V W T+I G ++ + F
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 64 REALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ +F +Q+ + D T++SI +A +LGAL+L +WI YI+KN ++ D+ G
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DM+ +C + WT I +A++GN ++A+++F M+ +KPD
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570
Query: 168 EVAYVGVLSARTH 180
VA+VG L+A +H
Sbjct: 571 GVAFVGALTACSH 583
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL-FQE 72
KD+ ++V Y ++D AR+ FD+M ER+ V WT+MI GY R + ++A+ L F+
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ + + T+V +++A A L LE GE + +I + ++ + +AL+DMY KC
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 133 ---------KFTWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y+ +D+A++ FD+ + L M Y+R REAL +F + S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D +++S +++ + L + G+ Y+ +N ++ NALIDMY KC +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 29 REQVDIARQCFDQMPERDYV-LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
RE + A++ F+ ++ ++I GY EA+ LF + S I D++T
Sbjct: 80 RESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF 139
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------- 132
L+A A A G I I K D+F N+L+ Y +C
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERN 199
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+WT+MI G A A+D+F +M+R + P+ V V V+SA
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISA 245
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +D +S+TA+++GY++ VD AR+ FD++P +D V W MI GY++ RF EA
Sbjct: 184 VFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEA 243
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F +Q +++ ++ T+VS+L+A +L +LELG+WI +++ ++ NAL+DM
Sbjct: 244 LACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDM 303
Query: 127 YCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T + W TMI G ++AL +F MLR ++ P++V +
Sbjct: 304 YSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTF 363
Query: 172 VGVLSA 177
+ VL A
Sbjct: 364 LAVLPA 369
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/191 (35%), Positives = 109/191 (57%), Gaps = 21/191 (10%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G KN +++ A+V Y ++ AR+ FD M ++D +LW TMI GY ++ + EAL
Sbjct: 289 GFGKNLQLVN--ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALV 346
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK----NDIFAGNALI 124
LF+ + N+ ++ T +++L A A+LGAL+LG+W+ YIDKN N++ ++I
Sbjct: 347 LFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSII 406
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC +W MI GLA++G+ ++AL +F +M+ +PD++
Sbjct: 407 VMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDI 466
Query: 170 AYVGVLSARTH 180
+VGVLSA T
Sbjct: 467 TFVGVLSACTQ 477
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
GT +V +T+I+ Y V++A Q F M R W MI G AL
Sbjct: 392 GTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALG 451
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111
LF+E+ D+ T V +L+A G +ELG + ++K+
Sbjct: 452 LFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKD 494
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F M +DV+++ +++ I + + A F +MPER+ WT+MI GY++
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EA+ LF +++ + + +E T+V++L A A+LGAL+LG I Y +++ K ++
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N LIDMY KC +W+ MI GLA+ G ++AL +FS M + I+
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A +H
Sbjct: 359 PNGVTFIGLLHACSH 373
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 49/188 (26%)
Query: 37 QCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
+C ++ +V W + + + +A+ LF ++ ++ D FT S+L A NL
Sbjct: 84 ECVEKQKPETFV-WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLL 142
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------------------- 130
L G + ++K +++++ N ++ +Y C
Sbjct: 143 DLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
Query: 131 ---------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
V+ +WT+MI G G +A+ +F++M A +K +EV
Sbjct: 203 QLIKQGDHEGAYDLFSRMPERNVR-SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEV 261
Query: 170 AYVGVLSA 177
V VL+A
Sbjct: 262 TVVAVLAA 269
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y+ ++ A + F++M ER V W+ MI G R EAL LF ++ I +
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 82 EFTIVSILTARANLGALELG 101
T + +L A +++G + G
Sbjct: 361 GVTFIGLLHACSHMGLISEG 380
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I+ M+ KD++S TA+V GY +++IAR F+ M E+D V W+ MI Y N+ E
Sbjct: 150 KIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSE 209
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF ++Q + DE T++S+++A AN+G+L+ WI + + + + NALID
Sbjct: 210 VLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALID 269
Query: 126 MYCKC---TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC T+ TWT+MI A+ G+G AL +F QM ++P+ V
Sbjct: 270 MFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVT 329
Query: 171 YVGVLSARTH 180
++ +L A H
Sbjct: 330 FLVLLYACCH 339
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 46/204 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++V AR+ FD MPERD V W M+D Y +RE L L +++ S ++
Sbjct: 32 TALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVV 91
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D+ + ++L+ + L G+ I +YI + + D +ALI+MY C
Sbjct: 92 PDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKI 151
Query: 134 ----------------------------------------FTWTTMIVGLAISGNGDKAL 153
+W+ MI A + + L
Sbjct: 152 YSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVL 211
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
++F++M + PDE+ + V+SA
Sbjct: 212 NLFNKMQGCGVSPDEITMLSVISA 235
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 15/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A FD+MPE D W+TM+ GY + + E L L +E+Q N+ D FT+ S++
Sbjct: 118 MDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGV 177
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF----------TW 136
+LG L+LG+W+ +YIDK VK D+ G AL+ MY KC +K TW
Sbjct: 178 CGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTW 237
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ MI G AI G+ +KAL +F M R+ I P+ V + VLSA +H+
Sbjct: 238 SIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHS 282
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V Y +D A + F M ERD W+ MI GY +AL LF ++
Sbjct: 202 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMK 261
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCK 129
S I+ + T S+L+A ++ G +E G I +T + K+ I ++D++C+
Sbjct: 262 RSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCR 317
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 15/160 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
V A F + +W T+I GY + A+ L++++ I + +T +L
Sbjct: 16 HVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLN 75
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF---------T 135
A L L G+ + + I K + + N LI +Y C V F +
Sbjct: 76 ACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSAS 135
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
W+TM+ G + +G + L + +M ++ D V+
Sbjct: 136 WSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVV 175
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++++S+ ++ GY+ VD A + FD++P ++ V WT +I G+++ + EA
Sbjct: 148 VFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEA 207
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q + ++ D T+++I++A ANLGAL LG W+ + K + ++++ N+LIDM
Sbjct: 208 LECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDM 267
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +W ++IVG A++G DKAL F M + ++P+ V+Y
Sbjct: 268 YARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSY 327
Query: 172 VGVLSARTH 180
L+A +H
Sbjct: 328 TSALTACSH 336
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA---LELGEWI 104
V WT+ I + + N F +A + F ++ + + + T++++L+A A+ + + G +
Sbjct: 53 VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112
Query: 105 KTYIDKNKVK-NDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGN 148
T+ K+ ND+ G ALIDMY KC V+ +W TMI G +G+
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGD 172
Query: 149 GDKALDMFSQM 159
D AL +F ++
Sbjct: 173 VDDALKLFDKL 183
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+++ARQ FD M +R+ V W ++I G+ +AL+ F+ ++ + + + S LTA
Sbjct: 274 IELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTA 333
Query: 92 RANLGALELGEWIKTYID-KNKVKND--IFAGNALIDMYCKC-TVKFTW 136
++ G ++ G +K + D K +N I L+D+Y + +K W
Sbjct: 334 CSHAGLIDEG--LKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAW 380
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 19/165 (11%)
Query: 35 ARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
AR+ F++MPE +D V WT MIDG++R AL F+ +Q N+ +EFTIV +L+
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV--------KFT 135
A + LGALE+G W+ +Y+ K +++ ++F GNALI+MY +C TV T
Sbjct: 251 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 310
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TMI GL+++G +A+++F M+ ++P V +VGVL+A +H
Sbjct: 311 YNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 355
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F + L+T +IDG++ + EA+ L+ + +I+ D + + SIL A
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKF 134
+ AL G + + K ++ ++++Y KC K
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 206
Query: 135 T--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T WT MI G + ++AL+ F M +++P+E V VLSA
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSA 251
Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A+ FD+M +RD + + TMI G + R+A+ LF+ + +
Sbjct: 282 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 341
Query: 81 DEFTIVSILTARANLGALELG 101
T V +L A ++ G ++ G
Sbjct: 342 TNVTFVGVLNACSHGGLVDFG 362
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 19/165 (11%)
Query: 35 ARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
AR+ F++MPE +D V WT MIDG++R AL F+ +Q N+ +EFTIV +L+
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TV--------KFT 135
A + LGALE+G W+ +Y+ K +++ ++F GNALI+MY +C TV T
Sbjct: 244 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 303
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TMI GL+++G +A+++F M+ ++P V +VGVL+A +H
Sbjct: 304 YNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 348
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F + L+T +IDG++ + +A+ L+ + +I+ D + + SIL A
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKF 134
+ AL G + + K + ++ ++++Y KC K
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 199
Query: 135 T--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T WT MI G + ++AL+ F M +++P+E V VLSA
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSA 244
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y +D A+ FD+M +RD + + TMI G + R+A+ LF+ + +
Sbjct: 274 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 333
Query: 80 GDEFTIVSILTARANLGALELG 101
T V +L A ++ G ++ G
Sbjct: 334 PTNVTFVGVLNACSHGGLVDFG 355
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F M +DV+++ +++ I + + A F +MPER+ WT+MI GY++
Sbjct: 179 MGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQC 238
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EA+ LF +++ + + +E T+V++L A A+LGAL+LG I Y +++ K ++
Sbjct: 239 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 298
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N LIDMY KC +W+ MI GLA+ G ++AL +FS M + I+
Sbjct: 299 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 358
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A +H
Sbjct: 359 PNGVTFIGLLHACSH 373
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 49/188 (26%)
Query: 37 QCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
+C ++ +V W + + + +A+ LF ++ ++ D FT S+L A NL
Sbjct: 84 KCVEKQKPETFV-WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLL 142
Query: 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------------------- 130
L G + ++K +++++ N ++ +Y C
Sbjct: 143 DLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
Query: 131 ---------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
V+ +WT+MI G G +A+ +F++M A +K +EV
Sbjct: 203 QLIKQGDHEGAYDLFSRMPERNVR-SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEV 261
Query: 170 AYVGVLSA 177
V VL+A
Sbjct: 262 TVVAVLAA 269
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y+ ++ A + F++M ER V W+ MI G R EAL LF ++ I +
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 82 EFTIVSILTARANLGALELG 101
T + +L A +++G + G
Sbjct: 361 GVTFIGLLHACSHMGLISEG 380
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 16/193 (8%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
IF M NK V+++ +IV+GY+ +VD A + F+ MPE++ V W T+I G ++ + F
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 64 REALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ +F +Q+ + D T++SI +A +LGAL+L +WI YI+KN ++ D+ G
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DM+ +C + WT I +A++GN ++A+++F M+ +KPD
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570
Query: 168 EVAYVGVLSARTH 180
VA+VG L+A +H
Sbjct: 571 GVAFVGALTACSH 583
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL-FQE 72
KD+ ++V Y ++D AR+ FD+M ER+ V WT+MI GY R + ++A+ L F+
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ + + T+V +++A A L LE GE + +I + ++ + +AL+DMY KC
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 133 ---------KFTWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y+ +D+A++ FD+ + L M Y+R REAL +F + S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D +++S +++ + L + G+ Y+ +N ++ NALIDMY KC +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 13 NKDVISYTAIVSGYIN---REQVDIARQCFDQMPERDYV-LWTTMIDGYLRVNRFREALT 68
+ DV + T +V+ RE + A++ F+ ++ ++I GY EA+
Sbjct: 61 DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF + S I D++T L+A A A G I I K D+F N+L+ Y
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180
Query: 129 KCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYV 172
+C +WT+MI G A A+D+F +M+R + P+ V V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 173 GVLSA 177
V+SA
Sbjct: 241 CVISA 245
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ K+ +++ ++ GY+ + ++D A + FD+MPER + WT MI+G+++ EA
Sbjct: 127 VFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEA 186
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q+S + D I+++L A NLGAL G W+ Y+ +N++ N+ ID+
Sbjct: 187 LVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDL 246
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+C+C +W ++IV + +G+ D++L F +M KP+ V +
Sbjct: 247 HCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTF 306
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 307 TGALTACSH 315
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V++A+ FD M +R V W ++I + E+L F+ +Q + T LTA
Sbjct: 253 VELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTA 312
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + +T + ++ I L+D+Y + +G +
Sbjct: 313 CSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSR----------------AGRLE 356
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL++ M +KP+EV +L+A RTH
Sbjct: 357 DALNVVQSM---PMKPNEVVIGSLLAACRTH 384
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 49/229 (21%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG---- 56
+G ++F M ++DV+S+ +++GY+ +D A + F+ +PERD V W MIDG
Sbjct: 189 IGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARV 248
Query: 57 -----------------------------YLRVNRFREALTLF-QEIQTSNIMGDEFTIV 86
+ RV + E L LF + ++ + +E T+V
Sbjct: 249 GNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLV 308
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------------- 133
S+LTA ANLG L +G W+ ++I N +K D+ L+ MY KC
Sbjct: 309 SVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVR 368
Query: 134 --FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W +MI+G + G GDKAL++F +M +A +P++ ++ VLSA TH
Sbjct: 369 SVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTH 417
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D++SY +++ GY+ ++ AR+ F++MP+RD + W +I GY+ V A LF+ I
Sbjct: 172 DLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETI 230
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ T +++ Y +D+A+ FD+MP R V W +MI GY +AL LF E++
Sbjct: 338 DVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEME 397
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEW 103
+ ++ T +S+L+A + G + G W
Sbjct: 398 KAGQQPNDATFISVLSACTHAGMVMEGWW 426
Score = 35.4 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 28/182 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ + +++ Y ++ AR FD+ D V + +MIDGY++ A +F E+
Sbjct: 141 DLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMP 200
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+++ I + A EL E I + D + N +ID +
Sbjct: 201 DRDVLSWNCLIAGYVGVGDLDAANELFETIP--------ERDAVSWNCMIDGCARVGNVS 252
Query: 131 -TVKF------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGVL 175
VKF +W +++ A N + L +F +M+ R ++ P+E V VL
Sbjct: 253 LAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAV-PNEATLVSVL 311
Query: 176 SA 177
+A
Sbjct: 312 TA 313
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +IF M KD++S+ +++GY+ +++ AR FD+ PE+D V W TMI GY+
Sbjct: 195 LGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLR 254
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFA 119
R+AL +F+E++ DE T++S+L+A A+LG L++G + I + + +
Sbjct: 255 GEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLL 314
Query: 120 GNALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLR-AS 163
GNAL+DMY KC +++ TW ++I GLA G+ ++++ +F++M +
Sbjct: 315 GNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKN 374
Query: 164 IKPDEVAYVGVLSARTH 180
IKP+E+ +VGV+ A +H
Sbjct: 375 IKPNEITFVGVIVACSH 391
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 24/144 (16%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
IAR F +PER V W+ + GY R A +F E+ +++ I T
Sbjct: 166 IARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMI----TGYV 221
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153
G +E +T D+ K+ + TW TMI G + G +AL
Sbjct: 222 KNGEMENA---RTLFDEAPEKDVV-----------------TWNTMIAGYVLRGEQRQAL 261
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
+MF +M PDEV + +LSA
Sbjct: 262 EMFEEMRNVGECPDEVTMLSLLSA 285
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 23 VSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82
+SG IN A Q F Q+ E D +W TM+ G + + + L+ +++ + D+
Sbjct: 59 ISGAIN-----YAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDK 113
Query: 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------ 130
FT +L L + G + + K + + F N LI + C
Sbjct: 114 FTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYD 173
Query: 131 ---TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+W+ + G A G A +F +M
Sbjct: 174 LPERSVVSWSALTAGYARRGELGVARQIFDEM 205
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYIN----REQVDIARQC---FDQMPERDYVLWTTMIDG 56
++F + K+V ++TAI+SGYI RE +D+ R+ FD M E+D V W++MI G
Sbjct: 162 AFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQG 221
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y +EAL LF ++ D + +V +L A A LGALELG W +D+N+ +
Sbjct: 222 YASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGN 281
Query: 117 IFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
G ALIDMY KC W I GLA+SG+ A +F QM +
Sbjct: 282 PVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEK 341
Query: 162 ASIKPDEVAYVGVLSARTH 180
+ I+PD +VG+L A TH
Sbjct: 342 SGIEPDGNTFVGLLCACTH 360
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N + + + F Q E + L+ TMI G + + F+E++ ++ ++ + D FT
Sbjct: 54 NFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPF 113
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------- 132
+L A A L +LG + + K ++D F +L+ +Y KC
Sbjct: 114 LLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKN 173
Query: 133 KFTWTTMIV--------------------------------------GLAISGNGDKALD 154
WT +I G A +G +ALD
Sbjct: 174 VAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALD 233
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +ML +PD A VGVL A
Sbjct: 234 LFFKMLNEGFRPDCYAMVGVLCA 256
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++D A + F M ++D V+W I G + A LF +++ S I
Sbjct: 286 TALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIE 345
Query: 80 GDEFTIVSILTARANLGALELG 101
D T V +L A + G ++ G
Sbjct: 346 PDGNTFVGLLCACTHAGLVDEG 367
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V + D AR+ FD MP+RD+V W MI GY+ R REAL LF E++
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ E T+VS LTA A LGALE G+W+ + ++ + G ALIDMY KC
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+TWT+ + GLA++G G L +F +M ++P+ V +V VL
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 442
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V A + FD M ER+ WT+ + G R+ L LF+ ++++ +
Sbjct: 373 TALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVE 432
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T V +L + G ++ G
Sbjct: 433 PNGVTFVVVLRGCSMAGLVDEG 454
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V + D AR+ FD MP+RD+V W MI GY+ R REAL LF E++
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ E T+VS LTA A LGALE G+W+ + ++ + G ALIDMY KC
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+TWT+ + GLA++G G L +F +M ++P+ V +V VL
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 442
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V A + FD M ER+ WT+ + G R+ L LF+ ++++ +
Sbjct: 373 TALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVE 432
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T V +L + G ++ G
Sbjct: 433 PNGVTFVVVLRGCSMAGLVDEG 454
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V + D AR+ FD MP+RD+V W MI GY+ R REAL LF E++
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ E T+VS LTA A LGALE G+W+ + ++ + G ALIDMY KC
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+TWT+ + GLA++G G L +F +M ++P+ V +V VL
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVL 435
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y V A + FD M ER+ WT+ + G R+ L LF+ ++++ +
Sbjct: 366 TALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVE 425
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T V +L + G ++ G
Sbjct: 426 PNGVTFVVVLRGCSMAGLVDEG 447
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++VS Y V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF+++Q + +
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ +GAL+LG ++ Y D + + ++ N+LIDMY KC
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
T + FTWT MI+G A++G +ALD+F+QM + P+EV ++GVL+A +H
Sbjct: 267 FRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 323
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQE 72
D A+++ Y + AR D P D V W T+I GY+R +AL F +
Sbjct: 39 DSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQ 98
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + DE T++++L A A GA+++G + N + + + G++L+ MY KC +
Sbjct: 99 MAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM 158
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT+MI G SG +A+D+F M A +K D+ V+S+
Sbjct: 159 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 218
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------- 133
D +++ ++A A + +L++G K + +D F NALI+MY C
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 134 ----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W T+I G G +KAL F QM + ++ DEV + VL A
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVA 117
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ +++ Y V+ A Q F + +RD WT MI G+ EAL LF ++
Sbjct: 242 KELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQM 301
Query: 74 QTSN-IMGDEFTIVSILTARANLGALELG 101
+ + +M +E + +LTA ++ G +E G
Sbjct: 302 EGEDKVMPNEVIFLGVLTACSHGGLVEQG 330
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 16/182 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF +M KDV S+T++V+GY +++IAR+ FD MP+R+ V W MI GY + N+ ++
Sbjct: 415 EIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKK 474
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY-IDKNKVKNDIFAGNALI 124
A+ LF + ++ E T+V +L+A LG L+LG I Y I++ + + NALI
Sbjct: 475 AIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANALI 534
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V +W +MI A G+ +AL MF QM+ KPD++
Sbjct: 535 DMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPDDI 594
Query: 170 AY 171
+
Sbjct: 595 TF 596
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+AR+ FD+ P RD V WT+MIDGY + + +AL LF + S++ +E T++S+L+A +
Sbjct: 311 LARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACS 370
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTT 138
G L LG+ I Y+ + + + NA++DMY KC F+WT+
Sbjct: 371 QKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTS 430
Query: 139 MIVGLAISGNGDKALDMFSQMLRASI 164
M+ G A +G + A F M + ++
Sbjct: 431 MVNGYAKTGELEIARKFFDDMPKRNV 456
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 17/159 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A F+Q+ + +W TMI G+ L+ F ++ + D + V L A
Sbjct: 211 AHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQ 270
Query: 95 -LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC--KCTV-------------KFTWTT 138
L ALE GE I I K + N LI Y C V +WT+
Sbjct: 271 FLTALE-GESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTS 329
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI G + AL +F ML + ++P+EV + VLSA
Sbjct: 330 MIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSA 368
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVL--WTTMIDGYLRVNRF 63
+F + + + ++V Y+ + +D A + F++M ERD + WT ++ GY R+ +
Sbjct: 187 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCY 246
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+AL F+ +Q I DE ++VS+L A LGALELG+WI Y DK +I NAL
Sbjct: 247 ADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNAL 306
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I+MY KC +W+TMIVGLA G +A+++F +M +A I+P
Sbjct: 307 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 366
Query: 169 VAYVGVLSARTH 180
+ +VG+L+A H
Sbjct: 367 ITFVGLLTACAH 378
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ A++ Y +D R+ FDQM ERD + W+TMI G R REA+ LFQE+
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
Q + I T V +LTA A+ G L G Y + K +I G ++ Y C V
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEG---LRYFESMKRDYNIEPG---VEHY-GCLVN 410
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +SG D+AL++ +M R KPD + +LS+ R+H
Sbjct: 411 L--------LGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSCRSH 447
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-----QTSNIMGDEFTI 85
+ + A F + + + L+ MI Y + A+T+++++ + I D+FT
Sbjct: 106 ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTF 165
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
++ + A L +LG+ + ++ K K++ N+L++MY KC
Sbjct: 166 PFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 225
Query: 131 --TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
F+WT ++ G A G AL+ F +M I+PDE++ V VL
Sbjct: 226 RDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 273
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 25/200 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M + V+S+ ++++GY+ D AR+ FD MP R+ V WTTM+ G R + R+
Sbjct: 97 HVFDGMPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQ 156
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-----KNKVKNDIFAG 120
AL LF E++ + + D+ +V+ L+A A LG L+LG WI Y+ +N + +
Sbjct: 157 ALLLFGEMRRACVELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLN 216
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI MY C + +WT+MI+ A G G +ALD+F ML +K
Sbjct: 217 NALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVK 276
Query: 166 -----PDEVAYVGVLSARTH 180
PDE+ ++GVL A +H
Sbjct: 277 VDGVRPDEITFIGVLCACSH 296
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 19/200 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F +M K I++ +V Y+ + ++ A + F MP RD V W T+I GY V
Sbjct: 167 MTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLV 226
Query: 61 NRFREALTLFQEI---QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R +EAL LF+++ + + + T+ ++L+A A G LE G W+ YIDKN++ ++
Sbjct: 227 GRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNG 286
Query: 118 FAGNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
LIDMY KC ++WTT+I GLA+ G + L MFS M
Sbjct: 287 TLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQD 346
Query: 162 ASIKPDEVAYVGVLSARTHN 181
+ + PD+V +VGVL+A H
Sbjct: 347 SGMCPDDVTFVGVLNACAHG 366
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 53/211 (25%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y + AR FD+MP + V T M + + +AL LFQ++ M
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 80 GDEFTIVSILTARANLGAL----ELGEWIKTYIDKNKVKNDIFAGNALIDMY-------- 127
D + +L A G+ G + +I ++ D+F LI +Y
Sbjct: 110 PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTV 169
Query: 128 ---------CKCTVKF-----------------------------TWTTMIVGLAISGNG 149
K T+ + +W T+I G + G
Sbjct: 170 ARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRC 229
Query: 150 DKALDMFSQMLRAS---IKPDEVAYVGVLSA 177
+AL +F QM+ S + P+ VLSA
Sbjct: 230 KEALGLFRQMVSPSSCTVHPNGPTMSTVLSA 260
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 26 YINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
Y +D A Q F++ P +RD WTT+I G R + L +F +Q S + D+ T
Sbjct: 296 YAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVT 355
Query: 85 IVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
V +L A A+ G ++ G + +K ++ I +ID+
Sbjct: 356 FVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDL 398
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 110/192 (57%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF M K+ +S+ A++SGY +++ AR+ FD+MP+RD W+ M+ GY ++ E
Sbjct: 197 KIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNE 256
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF E+ T + M +E +VS ++A A L ALE G W+ +YI + K++ ++ G L+
Sbjct: 257 ALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLL 316
Query: 125 DMYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W +MI GLA++G G +AL +F +M P+ +
Sbjct: 317 DMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAI 376
Query: 170 AYVGVLSARTHN 181
++ +L+ +H+
Sbjct: 377 TFIALLTGCSHS 388
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ M ER+ W +MI G +EAL LF ++Q + T +++LT ++ G +
Sbjct: 332 FNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLI 391
Query: 99 ELGEWI 104
G W+
Sbjct: 392 TEGRWL 397
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 18/188 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVL-WTTMIDGYLRVNRFRE 65
+F ++ D +S+ +++ GY+ ++D+A F +MPE++ + WTTMI GY++ +E
Sbjct: 167 LFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKE 226
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+Q SN+ D ++ S L+A + LGALE G+WI +Y +K + + D LID
Sbjct: 227 ALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLID 286
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC +V+ WT +I G A G G +A+ F +M +KP+ +
Sbjct: 287 MYAKCGEMEEALGVFKNMKTKSVQ-VWTALISGYAYHGLGREAISKFLEMQNMGVKPNAI 345
Query: 170 AYVGVLSA 177
+ VL+A
Sbjct: 346 TFTAVLTA 353
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 47/186 (25%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ D LW MI G ++ +L L+ + + + +T +L A +NL A
Sbjct: 67 FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYC---------------------------KCT 131
+ I +I K +DI+A N+LI+ Y K
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY 186
Query: 132 VK--------------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
VK +WTTMI G +G +AL +F +M +++ PD V+
Sbjct: 187 VKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSL 246
Query: 172 VGVLSA 177
LSA
Sbjct: 247 ASALSA 252
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++ Y +++ A F M + +WT +I GY REA++ F E+Q
Sbjct: 277 DSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQ 336
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDM 126
+ + T ++LTA + G +E G+ + I+++ +K I ++D+
Sbjct: 337 NMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDL 389
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ +++ Y +++ AR+ FD+ P +D V W +I GY+ N RE
Sbjct: 194 KLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNRE 253
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALI 124
AL LF E+ DE T++S+L+A A+LG LE GE + I+ NK K GNAL+
Sbjct: 254 ALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALV 313
Query: 125 DMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V+ +W ++I GLA G+ +++L +F +M + PDEV
Sbjct: 314 DMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEV 373
Query: 170 AYVGVLSARTH 180
+VGVL+A +H
Sbjct: 374 TFVGVLAACSH 384
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F Q+P+ D +W T I G + + A+ L+ ++ ++ D FT +L A
Sbjct: 60 ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTK 119
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF---------TWTTM 139
L + G + + + +++ N L+ + KC T F W+ +
Sbjct: 120 LFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSAL 179
Query: 140 IVGLAISGNGDKALDMFSQMLR 161
I G A G+ A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y + A + F + ++D V W ++I G E+L LF+E++ + +
Sbjct: 311 ALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCP 370
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
DE T V +L A ++ G ++ G + +K K++ I ++DM
Sbjct: 371 DEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDM 417
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++D++ + +++ GY ++D AR F++MPER+ + W+ +IDGY+R E
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL FQ + + I D V + A A LGALE G W+ +Y++K KV D+ ALID
Sbjct: 294 ALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALID 353
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MIVGL G G A+ +F+QM D+++
Sbjct: 354 MYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLS 413
Query: 171 YVGVLSARTH 180
+ VL++ TH
Sbjct: 414 VLAVLTSCTH 423
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 33 DIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
D A F + E R W T++ + + R +L F ++ + D +T ++L
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRVAVAPDAYTFPAVL 123
Query: 90 TA-----RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---CTVK-------- 133
A +G + GE ++T +D D+F NALI YC+ C
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDA-----DLFTRNALISFYCRIGDCRSGRKVFDHGV 178
Query: 134 ---FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G D A D+F +M
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 16/185 (8%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ +V+ + ++ GY+ AR FD+M +R V W TMI GY + F++A+ +F+
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256
Query: 72 EIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E++ +I + T+VS+L A + LG+LELGEW+ Y + + ++ D G+ALIDMY KC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+ TW+ MI G AI G A+D F +M +A ++P +VAY+ +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376
Query: 176 SARTH 180
+A +H
Sbjct: 377 TACSH 381
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I T+ +++ + A + ++ +D A + F+QMP+R+ W T+I G+ + +
Sbjct: 44 QIRDTLAAAEILRFCA--TSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKA 101
Query: 66 --ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
A+TLF E+ + I + FT S+L A A G ++ G+ I K D F +
Sbjct: 102 LIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSN 161
Query: 123 LIDMYCKC 130
L+ MY C
Sbjct: 162 LVRMYVIC 169
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 45/82 (54%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A F+++P + + W+ MI+G+ + +A+ F +++ + +
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366
Query: 80 GDEFTIVSILTARANLGALELG 101
+ +++LTA ++ G +E G
Sbjct: 367 PSDVAYINLLTACSHAGLVEEG 388
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M+ DV+S+ A+V GY+ ++ +A + F+ MPERD V W T++ G + R +
Sbjct: 154 RVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEK 213
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF ++ D+ + ++L+ A LGAL+ G+ + Y+ + + + +++ ++D
Sbjct: 214 AVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVD 273
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC FTW +IVGLA+ G+G ALD F +ML +PD
Sbjct: 274 LYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTT 333
Query: 171 YVGVLSARTH 180
++GVL +H
Sbjct: 334 FLGVLIGCSH 343
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T +V T IV Y +V++AR+ FD PE++ W +I G AL
Sbjct: 259 TRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDY 318
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYC 128
F + D T + +L ++ G ++ I + N V ++ + D+
Sbjct: 319 FDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADL-- 376
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A++M S M ++ D + G+L+ R H
Sbjct: 377 --------------LGRAGLIDEAMEMISSM---PMEADTYVWGGILAGCRMHG 413
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M+ DV+S+ A+V GY+ ++ +A + F+ MPERD V W T++ G + R +
Sbjct: 154 RVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEK 213
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF ++ D+ + ++L+ A LGAL+ G+ + Y+ + + + +++ ++D
Sbjct: 214 AVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVD 273
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC FTW +IVGLA+ G+G ALD F +ML +PD
Sbjct: 274 LYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTT 333
Query: 171 YVGVLSARTH 180
++GVL +H
Sbjct: 334 FLGVLIGCSH 343
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T +V T IV Y +V++AR+ FD PE++ W +I G AL
Sbjct: 259 TRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDY 318
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYC 128
F + D T + +L ++ G ++ I + N V ++ + D+
Sbjct: 319 FDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADL-- 376
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A++M S M ++ D + G+L+ R H
Sbjct: 377 --------------LGRAGLIDEAMEMISSM---PMEADTYVWGGILAGCRMHG 413
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F T ++DV+SYTA+++GY +R +D A++ FD++P +D V W MI GY + R++E
Sbjct: 134 KVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKE 193
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E+ ++ DE T+ ++L+ + G +ELG I ++ID + +++ NALID
Sbjct: 194 ALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALID 253
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +W T+I G A + +AL +F +ML+ P++V
Sbjct: 254 LYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVT 313
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 314 MLSILPACAH 323
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F+ + +D + W T+I GY +N +EAL +FQE+
Sbjct: 250 ALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETP 309
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN---ALIDMYCKC------- 130
++ T++SIL A A+LGA+++G WI YIDK K+K I + +LIDMY KC
Sbjct: 310 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGIITNTSLQTSLIDMYAKCGNIEAAN 368
Query: 131 --------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ MI G A+ G D A D+ S+M + I+PD++ +VG+LSA +H
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSH 426
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 55/167 (32%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +T+++S Y V+ A + FD RD V +T MI GY +A +F
Sbjct: 112 DLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMF---- 167
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
DE I +++
Sbjct: 168 ------DEIPIKDVVS-------------------------------------------- 177
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W MI G A G +AL++F++M++ +KPDE VLS TH+
Sbjct: 178 -WNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 28/203 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD +S+ I+ GY +V+ A + F +MPER+ V W+TM+ GY +
Sbjct: 534 KLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM 593
Query: 66 ALTLFQEIQTSNIMG------------DEFTIVSILTARANLGALELGEWIKTYIDKNKV 113
A +F ++ N++ D +VSIL A A G+L LG+ I Y+ K +
Sbjct: 594 ARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL 653
Query: 114 KNDIFAGNALIDMYCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFS 157
NALIDM+CKC TV+ +W ++I G A+ G+GDKAL++F+
Sbjct: 654 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFA 713
Query: 158 QMLRASIKPDEVAYVGVLSARTH 180
QM + PD V + VLSA TH
Sbjct: 714 QMKQQGFNPDAVTMINVLSACTH 736
Score = 38.1 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 22 IVSGYINREQVDIARQCFDQM--PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+VS Y + +R+ FD + P D L TM+ Y R+AL F +
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRR--- 446
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
D FT ++ A + G + + +++ K D F GNALID Y K
Sbjct: 447 -DSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSK 494
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +FG DV++ +++ +VD AR FD MPER W+ M+ Y R R
Sbjct: 187 ALALFGQCPELDVVACNSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARC 246
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EAL LF +Q + + +VS+L A+LGAL G W+ YID++ V + AL
Sbjct: 247 SEALALFSAMQADGMEPNANVLVSVLGCCASLGALVQGAWVHEYIDRHGVAMNALVVTAL 306
Query: 124 IDMYCKCT-----------------VKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+DMYCKC K +W +M+ GLA+ G +A+ +FS++ +
Sbjct: 307 VDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLS 366
Query: 166 PDEVAYVGVLSARTHN 181
PD V ++ VL+A H+
Sbjct: 367 PDNVTFIAVLTAYGHS 382
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y VD ARQ FD + W +M+ G ++REA+ LF E+++
Sbjct: 304 TALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSY 363
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T +++LTA + G
Sbjct: 364 GLSPDNVTFIAVLTAYGHSG 383
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M KDV S+T++V+GY ++ AR+ FDQ P ++ V W+ MI GY + N+ +E
Sbjct: 414 ELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKE 473
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALI 124
+L LF E+ ++ E T+VS+L+A L L LG+WI Y K + + NA++
Sbjct: 474 SLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIV 533
Query: 125 DMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC T F +W TMI G A +G +A+++F QM +P+ +
Sbjct: 534 DMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNI 593
Query: 170 AYVGVLSARTH 180
+V +L+A +H
Sbjct: 594 TFVSLLTACSH 604
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 24/176 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MGF E+ ++N ++ Y R + ARQ FD+ ++D V WTTMIDGY
Sbjct: 286 MGFDCELL--VRN-------GLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAH 336
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA+ +F+ + S++ +E T++++++A +++G LE+G+ + +++ ++ +
Sbjct: 337 DCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLH 396
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
NAL+DMY KC ++WT+M+ G A G+ + A F Q R
Sbjct: 397 NALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPR 452
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AIV Y +D A + F MPER+ + W TMI GY R ++A+ +F +++
Sbjct: 531 AIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEP 590
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
+ T VS+LTA ++ G + G + Y D + K I + M+
Sbjct: 591 NNITFVSLLTACSHGGLISEG---REYFDNMERKYGIKPERG------------HYACMV 635
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G ++A + + M ++P E A+ +L+A R H
Sbjct: 636 DLLGRTGLLEEAYKLIANM---PMQPCEAAWGALLNACRMH 673
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
VI++ A+ + + A F+++ + + +W TMI GY + A + F +
Sbjct: 195 VIAFCALA----HSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQ 250
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--- 132
+ D + V L A + GE + + K ++ N LI Y + +
Sbjct: 251 LRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKN 310
Query: 133 ------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWTTMI G A ++A+++F ML + ++P+EV + V+SA
Sbjct: 311 ARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSA 367
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +S+ A+++GY+ + A++ FDQMPER V W +MI GY R +F +
Sbjct: 232 DVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTK 291
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+ + +I + TI+ ++A + + +L G W+ +YI K+ K D G LI+
Sbjct: 292 ALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIE 351
Query: 126 MYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +VK WT++IVGL + G ++ L++F +M R +KP +
Sbjct: 352 MYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAIT 411
Query: 171 YVGVLSARTH 180
++GVL+A +H
Sbjct: 412 FIGVLNACSH 421
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 28/194 (14%)
Query: 2 GFTLEI-FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
G L+I FG D +++VS Y ++++ R+ FD+M ++D V W ++IDGY R
Sbjct: 138 GLVLKIGFGV----DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARC 193
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
AL +F+E+ D F+ ++ + G LE + D+ ++N + +
Sbjct: 194 GEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAA---RDVFDRMPIRNSV-SW 245
Query: 121 NALIDMYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NA+I+ Y K T K TW +MI G + KAL +F MLR I
Sbjct: 246 NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDIS 305
Query: 166 PDEVAYVGVLSART 179
P+ +G +SA +
Sbjct: 306 PNYTTILGAVSAAS 319
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 32/190 (16%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVD----------------IARQCFDQMPE 44
+ F L+ GT + + + +I + +N V A FD + E
Sbjct: 18 LHFPLQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQE 77
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
V W +I Y+ R +A+ LF ++ + + D FT+ +L A LGAL+ G+ I
Sbjct: 78 PTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQI 136
Query: 105 KTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNG 149
+ K D F ++L+ MY KC +W ++I G A G
Sbjct: 137 HGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEI 196
Query: 150 DKALDMFSQM 159
+ AL+MF +M
Sbjct: 197 ELALEMFEEM 206
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y V A + F +P++ WT++I G + L LF E+ + +
Sbjct: 347 TLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLK 406
Query: 80 GDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T + +L A ++ G A + + K +K I LID+ C+
Sbjct: 407 PHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCR--------- 457
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS-ARTH 180
+G+ ++A D +M IK ++V + +LS +R H
Sbjct: 458 -------AGHLEEAKDTIERM---PIKANKVIWTSLLSGSRKH 490
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M DV+SY A++ GYI ++ +A + F +MP+RD V W T++ G + R+ EA
Sbjct: 35 VFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEA 94
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF ++ D+ + ++L+ A LGALE G + Y+ +++ + ++F L+D+
Sbjct: 95 VLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGLVDL 154
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC FTW +IVGLA+ G+G L F +ML +PD V +
Sbjct: 155 YAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTF 214
Query: 172 VGVLSARTH 180
+GVL +H
Sbjct: 215 LGVLIGCSH 223
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
+ +V T +V Y V+IAR+ FD PER+ W +I G L
Sbjct: 139 SRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKY 198
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
F + D T + +L ++ G +++ + I
Sbjct: 199 FDRMLAEGFRPDGVTFLGVLIGCSHAGLIDMAKRI 233
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 109/196 (55%), Gaps = 17/196 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ ++F K+++S+ ++V GY +D+AR FD MPERD W+ +IDGY +
Sbjct: 63 YARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGN 122
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+ +A+ +F++++TS +E T+VS+L A A+LGAL+ G + Y+ N + ++ +
Sbjct: 123 YGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTS 182
Query: 123 LIDMYCKCTV-----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
LIDMY KC W MI GLA G ++LD++++M A IK
Sbjct: 183 LIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIK 242
Query: 166 PDEVAYVGVLSARTHN 181
PDE+ ++ +LSA H
Sbjct: 243 PDEITFLCLLSACAHG 258
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQE 72
+++ T+++ Y V+ A F + R D ++W MI G +E+L L+ E
Sbjct: 176 NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTE 235
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--- 129
+Q + I DE T + +L+A A+ G ++ ++ + KN + ++D+ +
Sbjct: 236 MQIAGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQ 295
Query: 130 --------CTVKFTWTTMIVGLAISG 147
C + T ++G +SG
Sbjct: 296 VAEAYQFLCQMPLEPTASMLGALLSG 321
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M +++++S+ A+++GY+ +A + FD+MPE++ + W +M+ GY RF+E
Sbjct: 225 ELFDKMPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKE 284
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF + + + T+VS +A + L +L G+W+ +Y+ KN + D +LI+
Sbjct: 285 ALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLIN 344
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K WT +IVGL + G D AL+ F +M R ++P +
Sbjct: 345 MYSKCGNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAIT 404
Query: 171 YVGVLSARTH 180
++GVL+A +H
Sbjct: 405 FIGVLNACSH 414
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M +KD++S+ +++ GY+ QV++ + F++MPERD WT +IDG+ + +
Sbjct: 163 KVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDV 222
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF ++ + N++ I + A + A EL DK KN I
Sbjct: 223 ARELFDKMPSRNLVSWNAMINGYMKAGDFVLASEL-------FDKMPEKNLI-------- 267
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +M+ G ++ +ALD+F ML P+ V SA
Sbjct: 268 ---------SWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATLVSTFSA 310
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+++ E VL+ +I Y++ +A+TLF ++ D FT+ ++ A L A
Sbjct: 65 FNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQL-LHEFNPDGFTLPCVIKGCARLHAT 123
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK-----------FTWTTMIVGL 143
+ G+ I + K + F ++L++MY KC + K +W ++I G
Sbjct: 124 KEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGY 183
Query: 144 AISGNGDKALDMFSQM 159
G + + +F +M
Sbjct: 184 VKCGQVELGMKLFEEM 199
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 22/175 (12%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLR 59
+ L IF ++ ++ Y ++ YI + A F Q+ D +I G R
Sbjct: 60 YVLSIFNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQLLHEFNPDGFTLPCVIKGCAR 119
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
++ +E + + ++F S++ + ++ + + +D D+ +
Sbjct: 120 LHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMD----DKDLVS 175
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
N+LID Y KC F+WT +I G + G D A ++F +M
Sbjct: 176 WNSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKM 230
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 18/198 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F MK + V+S+T I+ G I E V R FD+MPER+ V WT MI GYL
Sbjct: 169 MGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDS 228
Query: 61 NRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNKVKN-DIF 118
+E+ L +E+ M + T+ SILTA + G L +G W+ Y K K K +I
Sbjct: 229 GLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIM 288
Query: 119 AGNALIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G A++DMY KC KF +W M+ GLA+ G G ALD+F QM + +
Sbjct: 289 VGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA 348
Query: 164 IKPDEVAYVGVLSARTHN 181
KPD+V + VLSA +H+
Sbjct: 349 -KPDDVTFTSVLSACSHS 365
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 35 ARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
AR+ FD++P +D V WTT++ ++R N EAL +F E++ + DE T+V +
Sbjct: 69 ARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGC 128
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
A LG + +G + K + A NA++DMY K
Sbjct: 129 ARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAK 165
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKN--DIFAGNALIDMYCKCTVKFT---------- 135
+L + A +L++GE + I + + F NAL+ Y C +
Sbjct: 19 LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78
Query: 136 -------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
WTT++ D+AL +F +M R +KPDEV V
Sbjct: 79 SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLV 122
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y + AR+ FD M ERD + W MI GY + ++EAL LF+E+ S +
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
E T +SIL + A+LGA++LG+WI YI+KN +LID+Y KC
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+K +W MI GLA+ G DKA ++FS+M I+P+E+ +VG+LSA H
Sbjct: 420 FDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +D IS+TA+++GY +D ARQ FD+MP +D V W MI GY ++ R +EA
Sbjct: 186 VFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEA 245
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF++++ +N+ +E TIVS+L+A A AL+LG ++++I+ + +++ NALIDM
Sbjct: 246 LLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDM 305
Query: 127 YCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T + +W MI G + +AL +F +ML + ++P E+ +
Sbjct: 306 YSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITF 365
Query: 172 VGVLSARTH 180
+ +L + H
Sbjct: 366 LSILPSCAH 374
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 46/192 (23%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ A F+ + E + +W +MI G AL F + S + + +T +L +
Sbjct: 79 ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKS 138
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKF 134
A L + G+ I ++ K +D+F +LI+MY + + F
Sbjct: 139 CAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISF 198
Query: 135 T-----------------------------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
T W MI G A G +AL +F M +A++
Sbjct: 199 TALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP 258
Query: 166 PDEVAYVGVLSA 177
P+E V VLSA
Sbjct: 259 PNESTIVSVLSA 270
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
ARQ FD M + W MI G + +A LF ++ + I +E T V IL+A +
Sbjct: 416 ARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475
Query: 95 LGALELGE 102
G ++LG+
Sbjct: 476 AGLVDLGQ 483
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 24/200 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFR 64
++F M N+DV+S+ +++ GY+ +D + F +M R+ + W ++I G+++ R +
Sbjct: 164 KLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPK 223
Query: 65 EALTLFQEIQT--------SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
EAL F E+Q + + D+ TI S+L+A A+LGA++ G+W+ +Y+ ++ ++ D
Sbjct: 224 EALEFFHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECD 283
Query: 117 IFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ G AL+DMY KC WT MI A++G G +A DMF++M
Sbjct: 284 MVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEA 343
Query: 162 ASIKPDEVAYVGVLSARTHN 181
+KP+ V +VG+LSA H+
Sbjct: 344 GGVKPNLVTFVGLLSACAHS 363
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++ TA+V Y + A + F +M E+D + WT MI + +EA +F E++
Sbjct: 283 DMVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEME 342
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE---WI 104
+ + T V +L+A A+ G +E G WI
Sbjct: 343 AGGVKPNLVTFVGLLSACAHSGLVETGRCPNWI 375
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDI--ARQCFDQMPERDYVLWTTMIDGYL 58
+ + +IF +K ++ Y ++ Y ++ VD AR C
Sbjct: 51 LAYAADIFHYIKKPNLPFYNIMIRAYASKSNVDYDDARLC-------------------- 90
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+AL L++++ ++I D T +L A+ G I + K + +D+F
Sbjct: 91 ------QALILYKQMLCNDISPDCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLF 144
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
N+LI Y C +W +MI+G SG+ D++L++F +M
Sbjct: 145 VQNSLISFYSACEFVSNSRKLFDEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKM 200
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 18/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+ +VSGY + AR+ F +MPER+ V W+ M+D +R F EAL +F +
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNALIDMYCKCT 131
D +VS+L A A+LGA+E G W+ Y++ + ++ AL+DMYCKC
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
W MI GLA++G G++AL++F +ML+ P+E ++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 177 ARTH 180
A TH
Sbjct: 324 ACTH 327
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
TA+V Y ++ A Q FD + RD VLW MI G L +N + E AL LF+ +
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 79 MGDEFTIVSILTARANLGALELGE 102
M +E T +++L A + G ++ G+
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGK 335
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 18/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+ +VSGY + AR+ F +MPER+ V W+ M+D +R F EAL +F +
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNALIDMYCKCT 131
D +VS+L A A+LGA+E G W+ Y++ + ++ AL+DMYCKC
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
W MI GLA++G G++AL++F +ML+ P+E ++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 177 ARTH 180
A TH
Sbjct: 324 ACTH 327
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
TA+V Y ++ A Q FD + RD VLW MI G L +N + E AL LF+ +
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 79 MGDEFTIVSILTARANLGALELGE 102
M +E T +++L A + G ++ G+
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGK 335
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 19/194 (9%)
Query: 7 IFGTM-KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F TM +K +++++V GY ++++AR+ F+ M ERD + WT MI GY + + E
Sbjct: 271 VFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSE 330
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALI 124
AL LF+E++ I DE T+V++L+A A LGA +LG+ + YI+ + A++
Sbjct: 331 ALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVM 390
Query: 125 DMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
DMY KC F + +MI GLA G G+ A+ +F +++ +KPD
Sbjct: 391 DMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPD 450
Query: 168 EVAYVGVLSARTHN 181
EV +VGVL A H+
Sbjct: 451 EVTFVGVLCACGHS 464
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 49/212 (23%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A++ Y +++AR FD+ RD V + TMI GY VN+ AL LF E+Q
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKC-- 130
S I+ DEFT V++ + + L +G+ I + KN + ++I +A++DMY KC
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264
Query: 131 ------------TVK---------------------------------FTWTTMIVGLAI 145
T K +WT MI G +
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL++F +M IKPDEV V VLSA
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSA 356
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G +IF + +IS+ +++ +++ +D +R F Q+ + +W TMI GY R +
Sbjct: 36 GLHHQIFSISR---LISFFSLLG---SKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSD 89
Query: 62 RFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
REA+ L+ + I + FT +L + A L +LE G + ++I K+ ++D+F
Sbjct: 90 NPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVR 149
Query: 121 NALIDMYC-------------KCTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI +Y + V+ ++ TMI G A + AL +F +M + I
Sbjct: 150 NALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGIL 209
Query: 166 PDEVAYVGVLS 176
PDE +V + S
Sbjct: 210 PDEFTFVALFS 220
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+++ + K+++ T +V GY +V+IA F+ MP +D V W+ MI GY ++ E
Sbjct: 66 KLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPME 125
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF ++Q S + DE T++S+++A AN+GALE I ++++ + + + GNALID
Sbjct: 126 ALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALID 185
Query: 126 MYCKC---TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC T+ TWT++I A+ G+G AL +F M I+P+ V
Sbjct: 186 MFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVT 245
Query: 171 YVGVLSARTH 180
++G+L A H
Sbjct: 246 FLGLLYACCH 255
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+A F+ MP+++ V WT++I R ALTLF+ +++ I + T + +L A
Sbjct: 195 LALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACC 254
Query: 94 NLGALELG 101
+ G +E G
Sbjct: 255 HAGLVEEG 262
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 46/226 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F M +DVIS+ +++GY ++D A++ FD+MPER+ V W +M+ G+++
Sbjct: 277 MGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKC 336
Query: 61 NRFR-------------------------------EALTLFQEIQTSNIMGDEFTIVSIL 89
EAL LF +++ + E T+VS+L
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 396
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF--------- 134
+A A+LGAL+ G + TYI+ N+++ + G AL+DMY KC T F
Sbjct: 397 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 456
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W T+I G+AI GN +A +F +M A ++P+++ +V +LSA +H
Sbjct: 457 AWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSH 502
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F +DV+S+ A++ GY+ ++ AR FD+M RD + W TMI+GY V
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIV 305
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA LF E+ N++ + S+L G +E D F
Sbjct: 306 GKIDEAKRLFDEMPERNLV----SWNSMLAGFVKCGNVE----------------DAFG- 344
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+M C+ V +W +M+ A G ++AL +F QM +KP E V +LSA H
Sbjct: 345 -LFSEMPCRDVV--SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 401
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A Q F+ M +D + W T+I G +EA LF+E++ + +
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487
Query: 80 GDEFTIVSILTARANLGALELGE 102
++ T V+IL+A ++ G ++ G+
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQ 510
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +FG D ++ + + +VD AR FD MPER W+ M+ Y R R
Sbjct: 186 ALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAARC 245
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
EAL LF +Q + + +VS+L A+LGAL+ G W+ YID++ V + AL
Sbjct: 246 GEALALFSAMQADGVEPNANVLVSVLGCCASLGALDQGAWVHAYIDRHGVAMNALVVTAL 305
Query: 124 IDMYCKC-----------------TVKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+DMYCKC + K +W +M+ GLA+ G +A+ +FS++ +
Sbjct: 306 VDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRSYGLS 365
Query: 166 PDEVAYVGVLSARTH 180
PD V ++ VL+A H
Sbjct: 366 PDNVTFIAVLTAYGH 380
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y VD ARQ FD + W +M+ G ++REA+ LF E+++
Sbjct: 303 TALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRSY 362
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T +++LTA + G
Sbjct: 363 GLSPDNVTFIAVLTAYGHAG 382
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + +F M + +S+ A+V YI V A + F MP RD V W TMI GY V
Sbjct: 173 LALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLV 232
Query: 61 NRFREALTLFQEI---QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
RF EAL L +++ + + + T+ ++L A A G LE G W+ ++D+N++ +D
Sbjct: 233 GRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDG 292
Query: 118 FAGNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
+LIDMY KC ++WTTMI GLA+ G AL MF M
Sbjct: 293 SLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQD 352
Query: 162 ASIKPDEVAYVGVLSARTH 180
I PD+V VGVL+A H
Sbjct: 353 NGIHPDDVTLVGVLNACAH 371
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++ Y+ ++ A Q F++ PE RD WTTMI G R +AL +F +Q + I
Sbjct: 297 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 356
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T+V +L A A+ G ++ G
Sbjct: 357 PDDVTLVGVLNACAHCGLVDEG 378
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 55/202 (27%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++S Y + AR FD+MP+ V T M + + +AL +F+++ ++
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVL 110
Query: 80 GDEFT---------IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--- 127
D + L A A G+ + I + + D+F LI +Y
Sbjct: 111 PDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEY 170
Query: 128 --------------CKCTVKF-----------------------------TWTTMIVGLA 144
+ TV + +W TMI G +
Sbjct: 171 GELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYS 230
Query: 145 ISGNGDKALDMFSQMLRASIKP 166
+ G +AL++ QM+ S P
Sbjct: 231 LVGRFMEALELSRQMISPSSCP 252
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 111/191 (58%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ G+M K+V+S+ +++ YI +++ A+ F +MPERD V W +MI GY+++ + A
Sbjct: 207 LIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARA 266
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E++ +N+ + T++S+L A A GALE+G I + + + K + + NAL+DM
Sbjct: 267 LALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDM 326
Query: 127 YCKC-----------TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEV 169
Y KC +K W MIV LA+ G ++AL +FS M + +P+ V
Sbjct: 327 YAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRV 386
Query: 170 AYVGVLSARTH 180
++GVL A +H
Sbjct: 387 TFIGVLIACSH 397
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 19/195 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++V GY+ +V++A F +M R+ + W ++I G ++ +E
Sbjct: 185 KVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKE 244
Query: 66 ALTLFQEIQTSN----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+L +F E+Q + + D+ TI S+L+A A LG+++ G+W+ Y+ KN ++ D+ G
Sbjct: 245 SLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGT 304
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
AL++MY KC WT MI A+ G G KA D F +M +A +KP
Sbjct: 305 ALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKP 364
Query: 167 DEVAYVGVLSARTHN 181
+ V +VG+LSA +H+
Sbjct: 365 NHVTFVGLLSACSHS 379
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V+ Y V A + F+ MPE+D WT MI + ++A F E++
Sbjct: 299 DVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEME 358
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + + T V +L+A ++ G +E G
Sbjct: 359 KAGVKPNHVTFVGLLSACSHSGLVEQG 385
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV------NRFREALTLFQEIQTSNIM 79
+ N + A F + + ++ MI Y + N +AL L++++ I+
Sbjct: 66 FSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIV 125
Query: 80 GDEFTIVSIL--TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---- 133
+ T ++ +R G +GE I ++ K ND+F GN+LI ++ +
Sbjct: 126 PNNLTFPFLVKGCSRLQYGG-TVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNAR 184
Query: 134 -----------FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+VG +G + AL++F +M
Sbjct: 185 KVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKM 221
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G F S+ A+++ + + AR+ FD MPERD V W+TMI GY++
Sbjct: 328 IGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQT 387
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R AL LF + ++I +E T+ S L+A A+ G L+ G+WI YI V+
Sbjct: 388 GRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLS 447
Query: 121 NALIDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+ LIDMY KC V+F W MI LAI G +LD+FSQ+ R S
Sbjct: 448 SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTS 507
Query: 164 IKPDEVAYVGVLSARTH 180
IKP+ + ++GVLSA H
Sbjct: 508 IKPNSITFIGVLSACCH 524
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ +++ +++GY+ + +D+A + F ++PERD V W T+IDGY+ + +A
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 67 LTLFQEIQTSNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ + ++ D E +V ++ A A A+ G+ + T I KN F L+
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVH 320
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y C + +W+TM
Sbjct: 321 FYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTM 380
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +G D AL +F ML SI+P+EV LSA
Sbjct: 381 ISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+D + ++++ +D A+ ++MP RD V +TT++ + R A+ +F+
Sbjct: 74 RDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFR 133
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY---- 127
+ + N++ +E T+ +TA A GA I + + + + L+ Y
Sbjct: 134 SMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVL 193
Query: 128 --CKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
C F TW M+ G + K +DM +++ + DEV+++ ++
Sbjct: 194 ELCSARALFDGMTYRNTVTWNVMLNGYVKA----KMIDMAAEVFWRIPERDEVSWLTLI 248
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD++S+T ++ G+ D A FD MP + W +I Y + + R
Sbjct: 330 DLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRV 389
Query: 66 ALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL+LF E+Q S + DE T++ L A A LGA++ G WI YI K+ + + +L+
Sbjct: 390 ALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLL 449
Query: 125 DMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V+ + W+ MI LA+ G G ALD+FS ML A IKP+ V
Sbjct: 450 DMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAV 509
Query: 170 AYVGVLSARTH 180
+ +L A H
Sbjct: 510 TFTNILCACNH 520
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ ++++ Y + D+A + F MP +D V W MI+ + +AL LFQE
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE 264
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ ++ + T+VS+L+A A LE G WI +YI+ N + NA++DMY KC
Sbjct: 265 MEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC 324
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
+WTTM+ G A GN D+A +F M
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAM 366
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILTARA 93
A+ F+Q+P+ + W T+I GY + ++ +F + + + ++FT + A +
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTT 138
L L LG + + K + +D+F N+LI+ Y +W
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
MI A+ G DKAL +F +M +KP+ + V VLSA
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSA 283
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF KDV+S+TA++S Y +D+A++ FDQMP ++ V W MI GY +R+ EA
Sbjct: 256 IFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEA 315
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG+ E W+ ++I KN + GNALID
Sbjct: 316 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDLTVALGNALID 375
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI GL +G +AL +++ M R + D+
Sbjct: 376 MFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLDDTV 435
Query: 171 YVGVLSARTH 180
++ VL+A +H
Sbjct: 436 FIAVLAACSH 445
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KDVIS+ +IV Y++ V A + F+ MPER+ V W T++ + RV
Sbjct: 157 VGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVASFARV 216
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
A +F + T N + I + A G +E I D + D+ +
Sbjct: 217 GDMASAQAVFDRMPTRNAISWNLMI----SGYAAGGDVEAARSIFYQTD----QKDVVSW 268
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASI 164
A+I Y K VK +W MI G + D+AL F ML
Sbjct: 269 TAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF 328
Query: 165 KPDEVAYVGVLSA 177
+PDE V V+SA
Sbjct: 329 RPDEATLVSVVSA 341
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV S+T+++ GY ++D A + F+ MP R+ V W MI G+L R+ E
Sbjct: 234 KVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPE 293
Query: 66 ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
ALT F + + + +E +V +L+A A+LGAL+ G WI YIDK ++ ALI
Sbjct: 294 ALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALI 353
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC ++T+MI GL+ G G AL +F QML ++ P+E+
Sbjct: 354 DMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEI 413
Query: 170 AYVGVLSARTHN 181
+GVL+ +H+
Sbjct: 414 TILGVLNGCSHS 425
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYV--LWTTMIDGYLRVNRFREALTLFQEIQTSN- 77
+++ Y+ + AR FD P LW MI Y ++ +E + LF + T +
Sbjct: 111 SLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDG 170
Query: 78 ---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
++ DE+T ++T+ ++ +L GE + + K+ +++++ GN++I+M C+V
Sbjct: 171 PMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINM---CSVFA 227
Query: 133 ----------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
F+WT+++ G A G D+A ++F+ M
Sbjct: 228 RMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMM 270
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 19/163 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++D A + F+ + +RD + +T+MI G ++AL +F ++ N+M
Sbjct: 350 TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM 409
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+E TI+ +L ++ G +E G I ++ ++ I+ Y C +
Sbjct: 410 PNEITILGVLNGCSHSGLVEEGSSILANME------SLWGIAPKIEHY-GCYIDL----- 457
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G ++AL++ M ++PD V + +LSA R H+
Sbjct: 458 ---LGRAGYLERALEVVKTM---PMEPDIVIWRALLSASRIHH 494
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G F S+ A+++ + + AR+ FD MPERD V W+TMI GY++
Sbjct: 328 IGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQT 387
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R AL LF + ++I +E T+ S L+A A+ G L+ G+WI YI V+
Sbjct: 388 GRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLS 447
Query: 121 NALIDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+ LIDMY KC V+F W MI LAI G +LD+FSQ+ R S
Sbjct: 448 SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTS 507
Query: 164 IKPDEVAYVGVLSARTH 180
IKP+ + ++GVLSA H
Sbjct: 508 IKPNSITFIGVLSACCH 524
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 47/218 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +++ +++ +++GY+ + +D+A + F ++PERD V W T+IDGY+ + +A
Sbjct: 201 LFDGMTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 67 LTLFQEIQTSNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ + ++ D E +V ++ A A A+ G+ + T I KN F L+
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVH 320
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y C + +W+TM
Sbjct: 321 FYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTM 380
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +G D AL +F ML SI+P+EV LSA
Sbjct: 381 ISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+D + +I++ +D A+ ++MP RD V +TT++ + R A+ +F+
Sbjct: 74 RDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAVAVFR 133
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY---- 127
+ + N++ +E T+ +TA A GA I + + + + L+ Y
Sbjct: 134 SMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVL 193
Query: 128 --CKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
C F TW M+ G + K +DM +++ + DEV+++
Sbjct: 194 ELCSARALFDGMTHRNTVTWNVMLNGYVKA----KMIDMAAEVFWRIPERDEVSWL 245
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 108/186 (58%), Gaps = 15/186 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T DV+S+ ++ GY+ + AR+ FD MP R+ V WT +I Y ++ + EA+ +
Sbjct: 132 TAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEV 191
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F+ +Q I D ++S+L+A +LG ++LGEW+ ++ + + +I NA+IDMY K
Sbjct: 192 FRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVK 251
Query: 130 C-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C +VK TWTTMI G A+ G G +A+++F +M + ++ P+++ ++ V
Sbjct: 252 CGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAV 311
Query: 175 LSARTH 180
LS +H
Sbjct: 312 LSVCSH 317
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ AI+ Y+ V A + F+ M ++ V WTTMI G+ EA+ LF+ +
Sbjct: 237 QEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRM 296
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
+ N+ ++ T +++L+ +++G +LG W KT + + K+K + +ID+
Sbjct: 297 EKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDL 350
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 109/186 (58%), Gaps = 15/186 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T + DV+S+ ++ GY+ + AR+ FD MP R+ V WT +I Y ++ + EA+ +
Sbjct: 136 TAASADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEV 195
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F+ +Q I D ++S+L+A +LG ++LGEW+ ++ + + +I NA+IDMY K
Sbjct: 196 FRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVK 255
Query: 130 C-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C +VK TWTTMI G A+ G G +A+++F +M + ++ P+++ ++ V
Sbjct: 256 CGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAV 315
Query: 175 LSARTH 180
LS +H
Sbjct: 316 LSVCSH 321
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++ AI+ Y+ V A + F+ M ++ V WTTMI G+ EA+ LF+ +
Sbjct: 241 QEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRM 300
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
+ N+ ++ T +++L+ +++G +LG W KT + + K+K + +ID+
Sbjct: 301 EKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDL 354
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++D++ + +++ GY ++D AR F++MPER+ + W+ +IDGY+R E
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL FQ + I D V + A A LGALE G W+ +Y++K KV D+ ALID
Sbjct: 294 ALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALID 353
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MIVGL G G A+ +F+QM D+++
Sbjct: 354 MYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLS 413
Query: 171 YVGVLSARTH 180
+ VL++ TH
Sbjct: 414 ILAVLTSCTH 423
Score = 42.0 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 33 DIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
D A F + E R W T++ + + R +L F ++ + + D +T ++L
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 90 TA-----RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---CTVK-------- 133
A +G + GE ++T +D D+F NALI YC+ C
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDA-----DLFTRNALISFYCRIGDCRSGRKVFDHGV 178
Query: 134 ---FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G D A D+F +M
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F DV+S++ +V ++ +++ AR FDQMPERD V WTTM+ Y + RE
Sbjct: 159 RVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSRE 218
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L+ + + DE T+VS+++A NLG L++G + +YID+N + + NALID
Sbjct: 219 ALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALID 278
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +MI A + N + A +FS+M + PD V
Sbjct: 279 MYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVT 338
Query: 171 YVGVLSARTH 180
++ VL+A H
Sbjct: 339 FLAVLTAYAH 348
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 54/199 (27%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA- 93
A++ FDQ+P + + T+I GY + + +L L +++ + + DEFT ++ AR+
Sbjct: 48 AQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSR 107
Query: 94 -------NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----------------- 129
NL + + I + K + +F NALI +Y
Sbjct: 108 VRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGV 167
Query: 130 ----------CTVK-------------------FTWTTMIVGLAISGNGDKALDMFSQML 160
V+ +WTTM+ + + +AL+++ ML
Sbjct: 168 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 227
Query: 161 RASIKPDEVAYVGVLSART 179
++PDEV V V+SA T
Sbjct: 228 DKGVRPDEVTLVSVISACT 246
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M +++++ T +VSGY+ +++ AR F+QM E+D + W+ MI GY
Sbjct: 276 MDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAES 335
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++ +EAL LF E+Q I DE T++S+++A A+LG L+ + I ++DKN +
Sbjct: 336 DQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVN 395
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC +WT+MI AI G+ + AL+ F QM +++
Sbjct: 396 NALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVE 455
Query: 166 PDEVAY 171
P+ V +
Sbjct: 456 PNAVTF 461
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 50/226 (22%)
Query: 5 LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+EI G + KD T ++ Y+ ++ AR FD+M RD V W+TMI+GY +
Sbjct: 144 MEIHGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQG 203
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F +AL LF+E+++SN+ D+ + +I++A A L G+ + I +N D
Sbjct: 204 GHFDDALQLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLE 263
Query: 121 NALIDMYCKCTVK------FT--------------------------------------- 135
+ LI +Y C FT
Sbjct: 264 SGLISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLI 323
Query: 136 -WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ MI G A S +AL +F++M I+PDEV + V+SA H
Sbjct: 324 CWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAH 369
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IFG KD IS+ +VSG++N +D+A + F + P RD + W ++ GY R F E
Sbjct: 281 IFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEV 340
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF ++ S + D+ T V++++A A G+L + + ++ K D F +AL+DM
Sbjct: 341 MKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVVKEFGHQDAFLASALVDM 400
Query: 127 YCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC VK WT MI GLA +G+G +AL++F +M + P+ V
Sbjct: 401 YCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEVVAPNGVTL 460
Query: 172 VGVLSARTHN 181
+ VLSA +H+
Sbjct: 461 LAVLSACSHS 470
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G+ ++ FG ++D +A+V Y V IA F++ ++D LWT MI G
Sbjct: 380 GWVVKEFG---HQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNG 436
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
EAL LF ++QT + + T++++L+A ++ G L+ G
Sbjct: 437 HGTEALELFWKMQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ YI+ V+ A F D V M+ GY+ +AL F+++ + I+
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKC-------T 131
D++T V++LT L +G + I + D + NAL+DMY KC T
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 132 V--------KFTWTTMIVGLAISGNGDKALDMFSQ 158
+ +W TM+ G +G D A FS+
Sbjct: 281 IFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D S++ ++ GY + AR+ FD+MP ++ V WT MI+GY + +E+
Sbjct: 201 VFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKES 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E++ + I D T+V +++A + +G+ EL W+ +Y+DK +++ + AL+DM
Sbjct: 261 LALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDM 320
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ KC + +T +I GLA G+ AL +F +M S+ PD + +
Sbjct: 321 HAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITF 380
Query: 172 VGVLSARTH 180
VGVL+A +H
Sbjct: 381 VGVLTACSH 389
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + +F M + +S+ A+V YI V A + F MP RD V W TMI GY V
Sbjct: 101 LALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLV 160
Query: 61 NRFREALTLFQEI---QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
RF EAL L +++ + + + T+ ++L A A G LE G W+ ++D+N++ +D
Sbjct: 161 GRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDG 220
Query: 118 FAGNALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
+LIDMY KC ++WTTMI GLA+ G AL MF M
Sbjct: 221 SLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQD 280
Query: 162 ASIKPDEVAYVGVLSARTH 180
I PD+V VGVL+A H
Sbjct: 281 NGIHPDDVTLVGVLNACAH 299
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++ Y+ ++ A Q F++ PE RD WTTMI G R +AL +F +Q + I
Sbjct: 225 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 284
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T+V +L A A+ G ++ G
Sbjct: 285 PDDVTLVGVLNACAHCGLVDEG 306
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++D++ + +++ GY ++D AR F++MPER+ + W+ +IDGY+R E
Sbjct: 234 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 293
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL FQ + I D V + A A LGALE G W+ +Y++K KV D+ ALID
Sbjct: 294 ALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALID 353
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MIVGL G G A+ +F+QM D+++
Sbjct: 354 MYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLS 413
Query: 171 YVGVLSARTH 180
+ VL++ TH
Sbjct: 414 ILAVLTSCTH 423
Score = 42.0 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 28/149 (18%)
Query: 33 DIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
D A F + E R W T++ + + R +L F ++ + + D +T ++L
Sbjct: 65 DHADSVFAHLAEEASRHAFPWNTLVRLHAAASP-RRSLLYFSRMRRAAVAPDAYTFPAVL 123
Query: 90 TA-----RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---CTVK-------- 133
A +G + GE ++T +D D+F NALI YC+ C
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDA-----DLFTRNALISFYCRIGDCRSGRKVFDHGV 178
Query: 134 ---FTWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ G G D A D+F +M
Sbjct: 179 RDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G F S+ A+++ + + AR+ FD MPERD V W+TMI GY++
Sbjct: 328 IGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQT 387
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R AL LF + ++I +E T+ S L+A A+ G L+ G+WI YI V+
Sbjct: 388 GRSDMALKLFYSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLS 447
Query: 121 NALIDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+ LIDMY KC V+F W MI LAI G +LD+FSQ+ R S
Sbjct: 448 SGLIDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTS 507
Query: 164 IKPDEVAYVGVLSARTH 180
IKP+ + ++GVLSA H
Sbjct: 508 IKPNSITFIGVLSACCH 524
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ +++ +++GY+ + +D+A + F ++PERD V W T+IDGY+ + +A
Sbjct: 201 LFDGMTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 67 LTLFQEIQTSNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ + ++ D E +V ++ A A A+ G+ + T I KN F L+
Sbjct: 261 MKAYVQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVH 320
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y C + +W+TM
Sbjct: 321 FYGCCGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTM 380
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +G D AL +F ML SI+P+EV LSA
Sbjct: 381 ISGYVQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+D + ++++ +D A+ ++MP RD V +TT++ + R A+ +F+
Sbjct: 74 RDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFR 133
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY---- 127
+ + N++ +E T+ +TA A GA I + + + + L+ Y
Sbjct: 134 SMLSENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDGFVIVATNLVHAYAGVL 193
Query: 128 --CKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
C F TW M+ G + K +DM +++ + DEV+++
Sbjct: 194 ELCSARALFDGMTYRNTVTWNVMLNGYVKA----KMIDMAAEVFWRIPERDEVSWL 245
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F DV+S++ +V ++ +++ AR FDQMPERD V WTTM+ Y + RE
Sbjct: 127 RVFDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSRE 186
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L+ + + DE T+VS+++A NLG L++G + +YID+N + + NALID
Sbjct: 187 ALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALID 246
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW +MI A + N + A +FS+M + PD V
Sbjct: 247 MYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVT 306
Query: 171 YVGVLSARTH 180
++ VL+A H
Sbjct: 307 FLAVLTAYAH 316
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 54/200 (27%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA- 93
A++ FDQ+P + + T+I GY + + +L L +++ + + DEFT ++ AR+
Sbjct: 16 AQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSR 75
Query: 94 -------NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----------------- 129
NL + + I + K + +F NALI +Y
Sbjct: 76 VRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGV 135
Query: 130 ----------CTVK-------------------FTWTTMIVGLAISGNGDKALDMFSQML 160
V+ +WTTM+ + + +AL+++ ML
Sbjct: 136 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 195
Query: 161 RASIKPDEVAYVGVLSARTH 180
++PDEV V V+SA T+
Sbjct: 196 DKGVRPDEVTLVSVISACTN 215
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ S+ ++++G++ +D AR+ F QMPE++ V WTTMI+G+ + +A
Sbjct: 230 LFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKA 289
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L++F + + ++ T+VS L A +GAL++GE I Y+ N + + G AL+DM
Sbjct: 290 LSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDM 349
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K TW+ MI G AI G D+AL F +M A I PDEV +
Sbjct: 350 YAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIF 409
Query: 172 VGVLSARTHN 181
+ +L+A +H+
Sbjct: 410 LAILTACSHS 419
Score = 42.4 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + A + F + +D + W+ MI G+ F +AL F +++++ I
Sbjct: 344 TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGIN 403
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
DE ++ILTA ++ G ++ G F + +D + T+K +T +
Sbjct: 404 PDEVIFLAILTACSHSGNVDQGL--------------NFFESMRLDYSIEPTMKH-YTLI 448
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G D+AL M I PD V + + A R H
Sbjct: 449 VDLLGRAGRLDEALSFIQSM---PINPDFVIWGALFCACRAH 487
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ F +F M +KDV+S+T++V+ Y N+ V+ A Q F+ MP ++ V W ++I ++
Sbjct: 289 LQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQE 348
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++ EA+ LF + S +M D+ T+VSIL+ +N G L LG+ YI N + +
Sbjct: 349 GQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLC 408
Query: 121 NALIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC T W +I LA+ G G++A++MF M + +
Sbjct: 409 NSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLY 468
Query: 166 PDEVAYVGVLSARTHN 181
PDE+ + G+LSA +H+
Sbjct: 469 PDEITFTGLLSACSHS 484
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI++ Y+ + ARQ FD + +R V W +MI GY ++ EA+ LFQE+ +
Sbjct: 177 AILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF----- 134
D FT+VS+L+A + L+LG ++ YI V+ D NALIDMY KC ++F
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVF 296
Query: 135 ---------TWTTMIVGLAISGNGDKALDMFSQM 159
+WT+M+ A G + A+ +F+ M
Sbjct: 297 DQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHM 330
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V++ ++S + + A FDQ+P+ + ++ +I GY N ++L LF+++ +
Sbjct: 71 VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK----NDIFAGNALIDMYCKCT 131
+ M ++FT +L A A + W + +K NA++ Y C
Sbjct: 131 AGPMPNQFTFPFVLKA----CAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACR 186
Query: 132 VKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ +W +MI G + G D+A+ +F +ML+ ++ D V +LS
Sbjct: 187 LILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLS 246
Query: 177 ARTHN 181
A + +
Sbjct: 247 ASSKH 251
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
F MPE++ V W +I G L ++ F EA+ +F+ +Q S + DE T +L+A ++ G
Sbjct: 428 FFGMPEKNVVSWNVII-GALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGL 486
Query: 98 LELGEW 103
+++G +
Sbjct: 487 VDMGRY 492
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 17/189 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M+ +DV S+T++++GY + AR+ FD+MPER+ V W MI GY + ++ E
Sbjct: 309 EIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPME 368
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIK-TYIDKNKVKNDIFAGNAL 123
AL LF + ++ E T+V +L+A LG LE+G+ I +++K ++ + NA+
Sbjct: 369 ALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAV 428
Query: 124 IDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DMY KC K +W +MI A G+ KAL +F QM+ + +KPD
Sbjct: 429 MDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDH 488
Query: 169 VAYVGVLSA 177
+ ++GVLSA
Sbjct: 489 ITFIGVLSA 497
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ ++ Y+ + ARQ FD+ +D V WTTMI+GY R N EA+ LF
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNS 243
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ +S++ +E T++++L+A + G E+G+ + +I + + + NA++DMY KC
Sbjct: 244 MLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGC 303
Query: 131 --TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
T + F+WT+++ G A +G+ A +F +M +I
Sbjct: 304 LTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI 350
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ A FDQ + W TMI GY + N + F+++ + D + V L A
Sbjct: 102 IHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKA 161
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALID-------------MYCKCTVK--FTW 136
+G + + I K +D+F N LI M+ + +VK TW
Sbjct: 162 CGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTW 221
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TTMI G A + D+A+ +F+ ML + +KP+EV + +LSA
Sbjct: 222 TTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSA 262
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+I A++ Y +D A + F MPE++ V W +MI Y ++ALTLF ++
Sbjct: 422 LILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIG 481
Query: 76 SNIMGDEFTIVSILTARANLGALELGE 102
S + D T + +L+A + G + G+
Sbjct: 482 SGLKPDHITFIGVLSACSYGGFVSEGQ 508
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG + +F M +D +++ +++ R +D A F +MP ++ WT+MI G+++
Sbjct: 61 MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA+ LF +++ + +E T+VS+L A A+LG L+LG + Y K+ K ++
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N LIDMY KC +W+ MI GLA+ G ++AL +FS+M++ +K
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A +H
Sbjct: 241 PNGVTFIGLLHACSH 255
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++V ++ Y+ ++ AR+ F +M ER V W+ MI G + EAL LF E
Sbjct: 174 KRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSE 233
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ + + T + +L A +++G ++ G + + V I ++D++ +
Sbjct: 234 MIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAG 293
Query: 132 VKFTWTTMIVGLAISGNG 149
+ I+ + I NG
Sbjct: 294 LLEEAHEFILSMPIKPNG 311
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG ++ KN ++I TA++ Y+ VD R FD M RD V W+ MI GY
Sbjct: 24 MGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYA 83
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ R EAL LF+ ++++ I ++ T+VS+L+A A LG++E GE I +Y++ + ++++
Sbjct: 84 QNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVY 143
Query: 119 AGNALIDMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+AL+ MY KC +K TW +MI+GLAI+G + A+ ++++M
Sbjct: 144 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 203
Query: 164 IKPDEVAYVGVLSARTH 180
+KP+ + +VG+L+A TH
Sbjct: 204 VKPNNITFVGLLTACTH 220
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
BE T+ ++L+ A LG LE+G IK D + +++ A+++MY KC
Sbjct: 5 BEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 64
Query: 133 -------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G A +G ++AL++F M A IKP++V V VLSA
Sbjct: 65 DHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSA 116
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +E G + N V S A++ Y + ARQ FD++P+RD V W +MI G L +
Sbjct: 129 IGSYVESRGLISNVYVAS--ALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAI 185
Query: 61 NRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIF 118
N F E A+ L+ ++ + + T V +LTA + G +ELG E+ ++ + + +I
Sbjct: 186 NGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNIE 245
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA- 177
++D++C+ SG + +D + + R ++P+ V + +LSA
Sbjct: 246 HFACIVDLFCR----------------SG---RLIDAYEFICRMEVEPNVVIWGTLLSAS 286
Query: 178 RTH 180
R H
Sbjct: 287 RIH 289
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+T +V G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F E++
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
+ G+ F S L A GAL G I +++++ ++ D A++DMYCKC
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW MI G A+ G D AL++F QM A + PD+V + VL+A
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 180 H 180
H
Sbjct: 343 H 343
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y VD A FD +P R W MI G+ R +AL LF +++ + +
Sbjct: 269 TAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T++++LTA A+ G + G
Sbjct: 329 PDDVTLLNVLTACAHAGEVSEG 350
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+T +V G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F E++
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
+ G+ F S L A GAL G I +++++ ++ D A++DMYCKC
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW MI G A+ G D AL++F QM A + PD+V + VL+A
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 180 H 180
H
Sbjct: 343 H 343
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y VD A + FD +P R W MI G+ R +AL LF +++ + +
Sbjct: 269 TAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T++++LTA A+ G + G
Sbjct: 329 PDDVTLLNVLTACAHAGEVSEG 350
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++ D + TA+V+ V AR+ F+ MPE+D + W MI GY +V RE
Sbjct: 172 KVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESRE 231
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF +Q + + +++S+L+A LGAL+ G W +YI++NK+K + G L+D
Sbjct: 232 ALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVD 291
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +TW++ + GLA++G G+K L +FS M + + P+ V
Sbjct: 292 LYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVT 351
Query: 171 YVGVL 175
+V VL
Sbjct: 352 FVSVL 356
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYIN--REQVDIARQC--FDQMPERDYVLWTTMIDGYLRVNR 62
I G + V+ +V+ +N + D+ C F+ + ++ V W TMI +L+
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 718
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
E L F + + D+ T +++L ++G + L + I I + A
Sbjct: 719 AEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTA 778
Query: 123 LIDMYCK-------CTV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+D+Y K TV WT M+ A G G A+ F M+ + PD
Sbjct: 779 LLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD 838
Query: 168 EVAYVGVLSARTHN 181
V + +L+A +H+
Sbjct: 839 HVTFTHLLNACSHS 852
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F M +DV+++T +VSGY V+ AR+ FD MPE++ V WT++I GY R
Sbjct: 234 MGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARH 293
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +AL LF ++ NI D+FT S L A A++ +L G+ I Y+ + ++ +
Sbjct: 294 DLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVV 353
Query: 121 NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
++LIDMY KC W T+I LA G G +A+ MF M+R +
Sbjct: 354 SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGM 413
Query: 165 KPDEVAYVGVLSARTHN 181
KPD + + +L+A +H+
Sbjct: 414 KPDRITLIVLLNACSHS 430
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ ++SGY ++ AR+ FD+MPE+D V W TM+ Y + +
Sbjct: 107 KVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCND 166
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL ++E++ I +E++ +L + LEL + + +++ ++++D
Sbjct: 167 ALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLD 226
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGN---------------------- 148
Y KC+ WTTM+ G A G+
Sbjct: 227 AYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSL 286
Query: 149 ---------GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G KAL++F++M+ +I+PD+ + L A
Sbjct: 287 IAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQ----VDIARQCFDQMPER-DYVLWTTMIDGYLRV 60
+I G + ++ T +VS I+ +++ R FD M ++ D VLW T+I +
Sbjct: 336 QIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQH 395
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
R +EA+ +F ++ + D T++ +L A ++ G ++ G
Sbjct: 396 GRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEG 436
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 69 LFQEIQTSNIMG------DEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGN 121
LFQ I + ++ T+ +L AN +L+LG+W+ ++ +K + F N
Sbjct: 31 LFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLAN 90
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
LI+MY KC ++W M+ G A G A +F +M
Sbjct: 91 HLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKM 143
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S++ ++ ++ ++++AR+ FD+MP+RD V WT M+ GY + R REAL LF E++
Sbjct: 176 DVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMR 235
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
S + DE T+VS+++A A+LG +E G + ++++N + NALIDMY KC
Sbjct: 236 RSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLE 295
Query: 131 ---------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T K TW TM+ A GN D+A +F M+ + + PD V + +L A
Sbjct: 296 EAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYA 355
Query: 180 H 180
H
Sbjct: 356 H 356
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y ++ A + F M + + W TM+ EA LF+ + S ++
Sbjct: 283 ALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVP 342
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDM 126
D T++++L A A+ G ++ G + +D++ V+ I A+IDM
Sbjct: 343 DSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDM 389
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 113/195 (57%), Gaps = 18/195 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ IF M +DV+S+T++V+ Y +++ A F QM E++ V WT +I G+ + R
Sbjct: 202 SFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRG 261
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN---DIFAG 120
EAL LF++++ I FT S+L+A A+L + G+ I +I ++ + +IF
Sbjct: 262 DEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFIL 321
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMYCKC T F +W ++I G A +G+G+++L +F +M+ A I+
Sbjct: 322 NALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIR 381
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+LSA H
Sbjct: 382 PNHVTFLGLLSACCH 396
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 48/220 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + K+ S+ I+S Y + A DQMP+ + V + ++I G +E
Sbjct: 70 KVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKE 129
Query: 66 ALTLFQEI--QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+L +F+ + Q SN++ DEFT+VS++ + A+LGA EL + + ++I GNAL
Sbjct: 130 SLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNAL 189
Query: 124 IDMYCKC-----------------TVKFT-----------------------------WT 137
ID Y KC V +T WT
Sbjct: 190 IDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWT 249
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+I G A +G GD+AL +F QM I P + VLSA
Sbjct: 250 ALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSA 289
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 6 EIFGTMKNKDVISY-------TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
EI G + I Y A++ Y Q+ A F M E+D V W ++I G+
Sbjct: 301 EIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFA 360
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111
+ E+L +F+ + ++I + T + +L+A + G + G I ++K+
Sbjct: 361 QNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKD 413
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 109/182 (59%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++I +TA++ Y+ + +D AR+ FD+M +RD V W+TMI GY + R E+L LF+ +
Sbjct: 249 QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ ++ +E T+V +L+A A LG+ ELG I ++++ + + G+ALIDMY KC
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V TW +M+ GLA++G A+ ++ +M ++P+E+ +V +L+A
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 179 TH 180
TH
Sbjct: 429 TH 430
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++F M KD I +++GY V AR+ FD M R W +MI Y
Sbjct: 136 MDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHG 195
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++EAL LF+ + + + TI ++ + A G LE G+W ++ I + ++N +
Sbjct: 196 GEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVH 254
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++MY KC W+TMI G A +G ++L++F +M S K
Sbjct: 255 TALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCK 314
Query: 166 PDEVAYVGVLSA 177
P+EV VGVLSA
Sbjct: 315 PNEVTLVGVLSA 326
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 12 KNKDVISY--TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALT 68
+N + SY +A++ Y V AR F++M + + W +M+ G L +N F ++A+T
Sbjct: 346 QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAIT 404
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
L++E+ ++ +E T V++LTA + G ++ G + K + V + ++D+
Sbjct: 405 LYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLL 464
Query: 128 CK 129
CK
Sbjct: 465 CK 466
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD +P L T+I R+ +E L F + + ++ + A
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-----CTVK----------FTWTTM 139
L A G+ + + + DIF AL+D Y K C VK +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 140 IVGLAISGNGDKALDMFSQMLR 161
I G + SG+ KA +F M+R
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVR 179
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DVI + ++ G+ +++ + F QM +R V W +MI G + R E
Sbjct: 163 KVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGE 222
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND-IFAGNALI 124
AL LF+E+ D+ T+V+IL A LGA+++GEWI +Y + +++ D I GN+L+
Sbjct: 223 ALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLV 282
Query: 125 DMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D YCKC + T W MI GL +G G+ D+F +M+ ++P++
Sbjct: 283 DFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDA 342
Query: 170 AYVGVLSARTH 180
+VGVLS H
Sbjct: 343 TFVGVLSCCAH 353
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 48/211 (22%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ ++S+ V G +++ + A F Q + +L+ +MI GY +L LF
Sbjct: 39 QSNQILSHFISVCGALDK--MGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFS 96
Query: 72 EIQTSNIMGDEFTIVSILTARAN--------------------------LGALELGEWIK 105
+++ I DEFT +L + + +G ++L
Sbjct: 97 QMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCG 156
Query: 106 TYIDKNKV-----KNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAI 145
D KV D+ N +I +CK +W +MI GL
Sbjct: 157 RMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQ 216
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
SG +AL++F +M +PD+ V +L
Sbjct: 217 SGRDGEALELFREMWDHGFEPDDATVVTILP 247
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 14 KDVISY-TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+D IS ++V Y ++ A + F++MP+++ V W MI G + LF+E
Sbjct: 272 RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEE 331
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFAGNALIDMYCKCT 131
+ + ++ T V +L+ A+ G +E G + T + +K++ + ++D+
Sbjct: 332 MINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDL----- 386
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A D+ M ++P+ V + +LSA
Sbjct: 387 -----------LARNGCMEEARDLVRTM---PMRPNAVLWGSLLSA 418
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D A++ FD MP ++ V W MI GY +R+ EA
Sbjct: 265 VFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEA 324
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + GNALID
Sbjct: 325 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALID 384
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G +AL +++ M R ++ D
Sbjct: 385 MFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTV 444
Query: 171 YVGVLSARTH 180
++ L+A TH
Sbjct: 445 FIAALAACTH 454
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +KDV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R
Sbjct: 171 QVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVT 230
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A T+F + + N + I + A G +E + +D + D+ + A++
Sbjct: 231 ARTVFDRMPSRNAVSWNLMI----SGYATSGDVEAARSVFDRMD----QKDVVSWTAMVS 282
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K T K +W MI G + D+AL F ML +PDE
Sbjct: 283 AYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 342
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 343 TLVSVVSA 350
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY +R ++ A++ FD++P +D V W MI GY ++E
Sbjct: 190 KVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 249
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +NI DE T+V++++A A G++ELG + ++ID + +++ N+L+D
Sbjct: 250 ALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMD 309
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +W T+I G +AL +F +MLR+ +P++V
Sbjct: 310 LYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVT 369
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 370 MLSILPACAH 379
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 19/165 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+++ A F+ + +D + W T+I GY +N ++EAL LFQE+ S ++ T++SIL
Sbjct: 316 ELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILP 375
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGN---ALIDMYCKC---------------TV 132
A A+LGA+++G WI YIDK ++K+ A + +LIDMY KC
Sbjct: 376 ACAHLGAIDIGRWIHVYIDK-RLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G A+ G D A D+FS+M + I+PD++ +VG+LSA
Sbjct: 435 LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ KD +S+ ++S + Q+ AR+ F MP++ V WT ++ GY V F
Sbjct: 173 KVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAG 232
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F+++Q D+ +IV++L A A LGALELG WI Y +K+ + I+ NAL++
Sbjct: 233 AVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALME 292
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEV 169
MY KC +W+T I GLA G +A+ +F M R + P+ +
Sbjct: 293 MYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGI 352
Query: 170 AYVGVLSARTH 180
+VG+LSA +H
Sbjct: 353 TFVGLLSACSH 363
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 55/198 (27%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI---------QTSNIMGDEFTI 85
A + F +P + L MI Y + + R+A+ ++ + +GD FT
Sbjct: 61 AARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTY 120
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
+L A L A +LG + ++ ++ ++ N+LI+MY +C
Sbjct: 121 PFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMRE 180
Query: 131 -------------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+WT ++ G G+ A+++F QM
Sbjct: 181 KDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQM 240
Query: 160 LRASIKPDEVAYVGVLSA 177
+PD+V+ V VL A
Sbjct: 241 QMEGFEPDDVSIVAVLPA 258
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + DV S+ +VSGY + AR+ F +MP R+ V W+ MID + F EA
Sbjct: 133 VFDSGAALDVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEA 192
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNAL 123
L++F ++ D +VS+L A A+LGA++ G W Y++ + ++ AL
Sbjct: 193 LSVFDQMMREGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETAL 252
Query: 124 IDMYCKC-----------TVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DMYCKC V++ W +MI GLA++G+GD+AL++F +ML+ P++
Sbjct: 253 VDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQ 312
Query: 169 VAYVGVLSARTH 180
+ G L A TH
Sbjct: 313 STFAGALCACTH 324
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ ++V+ TA+V Y ++ A FD + RD VLW +MI G AL LFQ
Sbjct: 242 RQRNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQ 301
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
+ + ++ T L A + G ++ G I
Sbjct: 302 RMLQEGFVPNQSTFAGALCACTHTGHVDEGREI 334
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ Y + V AR FD+MP V WT MI GY + N F+E L +F+ +Q
Sbjct: 64 DIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQ 123
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
++ + DE +VSIL A A+LGA+E+G W+ Y+D+ + LIDMY KC
Sbjct: 124 STGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLD 183
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W MI G+A++G+GD AL +FS+M +A +KPD++ ++ + +A
Sbjct: 184 IAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTA 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
MI ++ + + ++ ++ + + D +T+ +L A A L + LGE K
Sbjct: 1 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 60
Query: 113 VKNDIFAGNALIDMY--------CKCT-------VKFTWTTMIVGLAISGNGDKALDMFS 157
DIF GN LI MY +C +WT MI G A + + L MF
Sbjct: 61 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFR 120
Query: 158 QMLRASIKPDEVAYVGVLSARTH 180
M ++PDE V +L A H
Sbjct: 121 LMQSTGLEPDEAILVSILCACAH 143
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y +DIA++ FD M +RD + W MI G AL LF E++ + +
Sbjct: 170 TGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVK 229
Query: 80 GDEFTIVSILTARA 93
D+ T ++I TA A
Sbjct: 230 PDDITFIAIFTASA 243
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ KDV+S+TA+VS Y +D A++ FD MP ++ V W MI GY +R+ EAL FQ
Sbjct: 264 QKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQ 323
Query: 72 EIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+ DE T+VS+++A A LG++E WI ++I K+ V I GNALIDM+ KC
Sbjct: 324 LMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKC 383
Query: 131 ---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
TWTTMI G A +G +AL +++ M R ++ D++ ++ L
Sbjct: 384 GDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAAL 443
Query: 176 SARTH 180
+A H
Sbjct: 444 AACVH 448
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +I+ Y++ A + F+ MPER+ V W T++ G+ RV
Sbjct: 164 QVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVT 223
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A T+F + + N + I + A+ G +E ++ D+ K D+ + A++
Sbjct: 224 AQTVFDRMPSRNAISWNLMI----SGYASSGDVEAA---RSMFDRMDQKKDVVSWTAMVS 276
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K T K +W MI G + +AL F ML +PDE
Sbjct: 277 AYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEA 336
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 337 TLVSVVSA 344
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V A+ F +M R + WTTMI G+ REAL ++ + +
Sbjct: 375 ALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVEL 434
Query: 81 DEFTIVSILTARANLGALELG 101
D+ ++ L A + G L+ G
Sbjct: 435 DDMVFIAALAACVHGGLLQEG 455
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 115/193 (59%), Gaps = 16/193 (8%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
IF M NK V+++ +IV+GYI +VD A + F+ MPE++ V W T+I ++ N +
Sbjct: 390 AFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMY 449
Query: 64 REALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ +F +Q+ + D T++SI +A +LGAL+L +WI YI+KN+++ D+ G
Sbjct: 450 EEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTT 509
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DM+ +C + WT I +A++GN ++A+++F++M+ +KPD
Sbjct: 510 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPD 569
Query: 168 EVAYVGVLSARTH 180
V ++G L+A H
Sbjct: 570 GVVFIGALTACCH 582
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL-FQE 72
KD+ ++V Y ++D AR+ FD+M ER+ V WT+MI GY R ++A+ L F+
Sbjct: 166 KDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRM 225
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ +++ + T+V +++A A L LE GE + +I + ++ + +AL+DMY KC
Sbjct: 226 VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNA 285
Query: 133 ---------KFTWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ + + + A++ N +AL + + M+ + I+PD ++ + +S+
Sbjct: 286 IDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISS 345
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y+ +DIA++ FD+ + L M Y+R +EAL + + S I
Sbjct: 274 SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIR 333
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D +++S +++ + L + G+ Y+ +N ++ NALIDMY KC +
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW +++ G +G D A + F+ M +I
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNI 433
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 20/195 (10%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYIN---REQVDIARQCFDQMPERDYV-LWTTMIDGYL 58
F L + + DV + T +V+ RE + A++ F+ ++ ++I GY
Sbjct: 50 FHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYA 109
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EA+ LF + S I D++T L+ A G I I K D+F
Sbjct: 110 SSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLF 169
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-A 162
N+L+ Y +C +WT+MI G A A+D+F +M+R
Sbjct: 170 VQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDE 229
Query: 163 SIKPDEVAYVGVLSA 177
+ P+ V V V+SA
Sbjct: 230 DVIPNSVTMVCVISA 244
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +S+T ++ GY N VD AR+ FD +D +W MI GY++ N F+E
Sbjct: 161 QVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKE 220
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F+ +Q + + DE IV+IL+A A++GAL+ G WI Y+ + + + LID
Sbjct: 221 GLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLID 280
Query: 126 MYCKC----TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC K+ W MI G+A+ G+G+ A+ +F +M +A IKPD +
Sbjct: 281 MYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNIT 340
Query: 171 YVGVLSA 177
++ V A
Sbjct: 341 FIAVWXA 347
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y +D+A+ F++M +RD V W MI G A+ LF E++ + I
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 80 GDEFTIVSILTARANLGALELG 101
D T +++ A +N G ++ G
Sbjct: 336 PDNITFIAVWXACSNSGMVDEG 357
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +E F M +++ TA+VSGY ++D AR FDQ +D V WTTMI Y
Sbjct: 266 MDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAES 325
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EAL +F+E+ S I D T++S+++A NLG L+ +W+ Y N +++ +
Sbjct: 326 DHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPID 385
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY KC +W++MI A+ G +L +F+QM + +++
Sbjct: 386 NALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVE 445
Query: 166 PDEVAYVGVLSARTHN 181
P+EV +VGVL +H+
Sbjct: 446 PNEVTFVGVLYGCSHS 461
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D T ++ Y +++ AR FD+M +RD V W TMI+ Y R EA LF+E++
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------ 128
SN+M DE + +I++A G + I ++ +N V+ D AL+ MY
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267
Query: 129 -------KCTVK---------------------------------FTWTTMIVGLAISGN 148
K +V+ WTTMI A S +
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M + IKPD V + V+SA
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISA 356
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D AR F++MP R+ V W++MI+ + ++L+LF +++ N+
Sbjct: 387 ALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEP 446
Query: 81 DEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+E T V +L ++ G +E G+ I + D+ + I ++D++ + + +
Sbjct: 447 NEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEV 506
Query: 140 IVGLAISGN 148
I + ++ N
Sbjct: 507 IESMPMAPN 515
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
P + +++ +++ R R + +Q I+ D + IL A + + AL G
Sbjct: 75 PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF--------------TWTTMIVGLAISG 147
+ + K +D F L+DMY C + + TW TMI G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA--RTHN 181
D+A +F +M +++ PDE+ ++SA RT N
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 230
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 114/191 (59%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++++S+ +++GY ++++AR+ F +MP +D V W+TMI G+ F E
Sbjct: 193 ELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A + F+E+Q + +E ++ +L+A A GALE G+ + +I+K+ + + NAL+D
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLD 312
Query: 126 MYCKC------TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC + F +WT+M+ LA+ G+G++A+ +F +M + I+PDE+
Sbjct: 313 TYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEI 372
Query: 170 AYVGVLSARTH 180
A++ +L A +H
Sbjct: 373 AFISLLYACSH 383
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++S Y V AR+ FD+MPE + + W M+ R + LF + N+M
Sbjct: 145 TTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLM 204
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ +L G LEL + + +K+D+ +W+TM
Sbjct: 205 ----SWNVMLAGYTKAGELELA---REMFLEMPMKDDV-----------------SWSTM 240
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
IVG A +G ++A F ++ R ++P+E + GVLSA
Sbjct: 241 IVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSA 278
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQ-MPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +A+ F++ M ER+ V WT+M+ EA+ +F +++ S I
Sbjct: 309 ALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIR 368
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK----VKNDIFAGNALIDMY-------- 127
DE +S+L A ++ G +E G Y DK K ++ I ++D+Y
Sbjct: 369 PDEIAFISLLYACSHAGLVEQG---CEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQK 425
Query: 128 -----CKCTVKFT---WTTMIVGLAISGN 148
C+ + T W T++ ++ G+
Sbjct: 426 AYEFVCQMPIPCTAIIWRTLLGACSMHGD 454
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSI 88
+ +D A + F P D + T+I G +R +++L F E++ ++ D F+ I
Sbjct: 53 DSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFI 112
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+ A ANL ++ +G + + + +F G LI MY +C
Sbjct: 113 VKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGEC 154
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 111/192 (57%), Gaps = 17/192 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ G+M K+V+S+ +++ YI +++ A+ F +MPERD V W +MI GY+++ + A
Sbjct: 313 LIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARA 372
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E++ +N+ + T++S+L A A GALE+G I + + + K + + NAL+DM
Sbjct: 373 LALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDM 432
Query: 127 YCKC-----------TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEV 169
Y KC +K W MIV LA+ G ++AL +FS M + +P+ V
Sbjct: 433 YAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRV 492
Query: 170 AYVGVLSARTHN 181
++GVL A +H
Sbjct: 493 TFIGVLIACSHK 504
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VS Y + +++AR FD+MP ++ V WT M+ +
Sbjct: 321 FELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVG 380
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF E++ + I D +VSIL A A G L LG+ I ++ + K+ NAL+
Sbjct: 381 EAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALM 440
Query: 125 DMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC +W +I G A+ G+G+KAL++F+QM + PD
Sbjct: 441 DMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDA 500
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 501 VTLINVLSACTH 512
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + + +VD AR FD+MPE+D V W TM+DGY + E
Sbjct: 260 KVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEE 319
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++A G +E+ I DK KN +
Sbjct: 320 AFELFQRMPGRNVV----SWSTVVSAYCKKGDMEMARVI---FDKMPAKNLV-------- 364
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G +A +F++M A+I+ D VA V +L+A
Sbjct: 365 ---------TWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAA 407
Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 25 GYINREQVDIARQCFD-QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
G +NR A FD ++ E+D V W +I G+ +AL LF +++ D
Sbjct: 447 GCVNR-----ADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAV 501
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGL 143
T++++L+A ++G +E G F N D K ++ + M+ L
Sbjct: 502 TLINVLSACTHMGLVEEGRR--------------FFANMETDYGIKPEIEH-YGCMVDLL 546
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
G +A+DM M +P+EV + +LSA R H
Sbjct: 547 GRGGLIKEAVDMIKSM---PWEPNEVIWGSLLSACRLH 581
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IFG KD IS+ +VSG++N +D+A + F + P RD + W ++ GY R F E
Sbjct: 281 IFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKSFNEV 340
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF ++ S + D+ T V++++A G+L + + ++ K D F +AL+DM
Sbjct: 341 MKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFDHQDAFLASALVDM 400
Query: 127 YCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC VK WT MI GLA +G+G +AL++F +M + P+ V
Sbjct: 401 YCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCKMQTEVVAPNGVTL 460
Query: 172 VGVLSARTHN 181
+ VLSA +H+
Sbjct: 461 LAVLSACSHS 470
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ YI+ V+ A F D V M+ GY+ +AL F+++ + I+
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKC-------T 131
D++T V++LT L +G + I + D + NAL+DMY KC T
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 132 V--------KFTWTTMIVGLAISGNGDKALDMFSQ 158
+ +W TM+ G +G D A FS+
Sbjct: 281 IFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++D +A+V Y V A F++ ++D LWT MI G EAL LF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCK 447
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+QT + + T++++L+A ++ G L+ G
Sbjct: 448 MQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 20/189 (10%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K VIS+ +++ YI V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 218 MPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 277
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E+Q + + E T++SIL A A GALE+G I + + K + + GNAL++MYCKC
Sbjct: 278 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 337
Query: 131 ----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM---LRASIKPDEVAY 171
TV W M++GLA+ G ++ +F++M L SI+PD V +
Sbjct: 338 GNLSLAWEIFNGMKMKTVS-CWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTF 396
Query: 172 VGVLSARTH 180
+GVL A +H
Sbjct: 397 IGVLVACSH 405
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M + ++ A+++G+ + A + F +M ERD V WT +I GY + E
Sbjct: 66 HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L +F +++ + + D F + S+L+A A+L ALELG Y+ ++ DI G+AL+D
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185
Query: 126 MYCK-------CTV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY K C V + +W ++I G A G G+ A+ +F QML+A IKP+E++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245
Query: 171 YVGVLSARTH 180
+VGVLSA +H
Sbjct: 246 FVGVLSACSH 255
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++ +A+V Y ++ A Q FD+MP+R+ V W ++I G + R +A+ LF+++
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML 235
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ I +E + V +L+A ++ G + G
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEG 262
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 46/143 (32%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
++FT+ +++ A A++ +LE G+ YI K ++D+ AL+ MY +C
Sbjct: 9 NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68
Query: 131 --------------------------TVKF----------TWTTMIVGLAISGNGDKALD 154
+K +WT +I G A +G GD++L+
Sbjct: 69 DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F+QM + +K D VLSA
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSA 151
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++D++ + +++ GY ++D AR F++MPER+ + W+ +IDGY+R E
Sbjct: 128 ELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNE 187
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL FQ + I D V + A A LGALE G W+ +Y++K KV D+ ALID
Sbjct: 188 ALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALID 247
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW MIVGL G G A+ +F+QM D+++
Sbjct: 248 MYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLS 307
Query: 171 YVGVLSARTH 180
+ VL++ TH
Sbjct: 308 ILAVLTSCTH 317
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 108/190 (56%), Gaps = 17/190 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M +DV ++ ++++GY ++ A + F MP R+ WT MI GY + ++ +AL
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKAL 199
Query: 68 TLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++F ++ M +E T+ S+L A ANLGALE+GE I+ Y N +++ NAL++M
Sbjct: 200 SMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEM 259
Query: 127 YCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y +C +W +MI+GLA+ G D+A+++F +MLR PD+V
Sbjct: 260 YARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVT 319
Query: 171 YVGVLSARTH 180
+VGVL A TH
Sbjct: 320 FVGVLLACTH 329
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ A + FD +P+ L+ +I Y + +L+ ++ +E + + +A
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
A+L + + G + T+ K+ D+FA AL+DMY K TV+ TW
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 137 TTMIVGLAISGNGDKALDMFSQM 159
+MI G A G+ + AL++F M
Sbjct: 152 NSMIAGYARCGDLEGALELFRLM 174
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ YI +V+ A F+ + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
+E T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 335 NEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQ 394
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 395 VFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY + + A++ FD++P +D V W +I GY ++E
Sbjct: 159 KVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKE 218
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+V++L+A A ++ELG + ++ID + +++ NALID
Sbjct: 219 ALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALID 278
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P+EV
Sbjct: 279 LYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVT 338
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 339 MLSILPACAH 348
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 46/185 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD + E + ++W TM G+ + AL L+ + + ++ + +T +L A A A
Sbjct: 60 FDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAF 119
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT------ 135
G+ I ++ K D++ +LI MY K V +T
Sbjct: 120 REGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGY 179
Query: 136 -----------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
W +I G A +GN +AL++F +M++ ++KPDE V
Sbjct: 180 ASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMV 239
Query: 173 GVLSA 177
VLSA
Sbjct: 240 TVLSA 244
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD M R W MI G+ R A +F ++ I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T V +L+A ++ G L+LG I ++ + K+ + +ID+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDL------------ 484
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG +A +M + M + PD V + +L A
Sbjct: 485 ----LGHSGLFKEAEEMINSM---EMDPDGVIWCSLLKA 516
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M +DVI++ +++ + + A + F +MPER+ WT+MI GY +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EA+ LF E++ + ++ +E T+V++L A A++G L LG I + +++ + +I
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N LIDMY KC +W+ MI GLA G + AL +F++M+ +K
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A +H
Sbjct: 344 PNAVTFIGILHACSH 358
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ F + + W T + + + +A++LF ++ +I D +T +L A +
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------------ 130
L + G+ + Y++K +++++F N ++ +Y C
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 131 ---TVKF-------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
VK +WT+MI G A G +A+D+F +M A + P+E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 169 VAYVGVLSA 177
V V VL A
Sbjct: 246 VTVVAVLVA 254
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ ++ Y+ ++ A + FD M ER V W+ MI G R +AL LF ++
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + + T + IL A +++G +E G ++ + + I ++D++ + +
Sbjct: 338 INTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGL 397
Query: 133 KFTWTTMIVGLAISGNG 149
I+ + I+ NG
Sbjct: 398 LQEAHEFIMNMPIAPNG 414
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG ++ KN ++I TA++ Y+ VD R FD M RD V W+ MI GY
Sbjct: 246 MGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYA 305
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ R EAL LF+ ++++ I ++ T+VS+L+A A LG++E GE I +Y++ + ++++
Sbjct: 306 QNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVY 365
Query: 119 AGNALIDMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+AL+ MY KC +K TW +MI+GLAI+G + A+ ++++M
Sbjct: 366 VASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIE 425
Query: 164 IKPDEVAYVGVLSARTH 180
+KP+ + +VG+++A TH
Sbjct: 426 VKPNNITFVGLMTACTH 442
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G IF + KD I+Y ++S Y +V AR+ FD+M +R V W MI Y +
Sbjct: 147 LGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQN 206
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ + +FQ +Q +E T+ ++L+ A LG LE+G IK D + +++
Sbjct: 207 GDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVS 266
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
A+++MY KC TW+ MI G A +G ++AL++F M A IK
Sbjct: 267 TAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIK 326
Query: 166 PDEVAYVGVLSA 177
P++V V VLSA
Sbjct: 327 PNDVTLVSVLSA 338
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +E G + N V S A++ Y + ARQ FD++P+RD V W +MI G L +
Sbjct: 351 IGSYVESRGLISNVYVAS--ALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAI 407
Query: 61 NRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIF 118
N F E A+ L+ ++ + + T V ++TA + G +ELG E+ ++ + + +I
Sbjct: 408 NGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIE 467
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA- 177
++D++C+ SG + +D + + R ++P+ V + +LSA
Sbjct: 468 HFACIVDLFCR----------------SG---RLIDAYEFICRMEVEPNVVIWGTLLSAS 508
Query: 178 RTH 180
R H
Sbjct: 509 RIH 511
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 16 VISYTAIVSGYINR----EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+I Y ++ +I R + ARQ FDQ+P D + + I Y R++ EAL F
Sbjct: 26 IIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFV 85
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ +N+ FTI I + A+L A+++G+ + + + + + +F NALI+ Y K
Sbjct: 86 SMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAK 143
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 15/183 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K+++ ++ Y+ E V A++ FD++PE+D V WT+MI G ++ +E+L LF E+
Sbjct: 315 KELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEM 374
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
S D + S+L+A A+LG L+ G W+ YID +++K D+ G +LIDMY KC
Sbjct: 375 LGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCI 434
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
TW I GLAI+G+G +AL F ++ + +P+E+ ++ V SA
Sbjct: 435 EMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSAC 494
Query: 179 THN 181
H+
Sbjct: 495 CHS 497
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD MP RD V WT +I GY++ F +A+ LF + ++ + T VSIL A
Sbjct: 238 ASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRM---DVAPNAATFVSILGACGK 294
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
LG L LG+ I + K ++ N L+DMY KC +WT+M
Sbjct: 295 LGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSM 354
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL ++LD+F +ML + +PD V VLSA
Sbjct: 355 ISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSA 392
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
+I GY N A+ +++ + + + D +T+ ++L + A + + I T K
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214
Query: 113 VKNDIFAGNALIDMYCKC--TVK-------------FTWTTMIVGLAISGNGDKALDMFS 157
+ D+F N+ + +Y C TV +WT +I G +G + A+ +F
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALF- 273
Query: 158 QMLRASIKPDEVAYVGVLSA 177
LR + P+ +V +L A
Sbjct: 274 --LRMDVAPNAATFVSILGA 291
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T+++ Y +++A+Q F+ +P ++ W I G +EAL F +
Sbjct: 417 DVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLV 476
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S +E T +++ +A + G ++ G
Sbjct: 477 ESGTRPNEITFLAVFSACCHSGLVDEG 503
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 2 GFTLEIFGTM-KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
G E+F + + + + A++ GY VDIAR FDQM + D + + ++I GY+
Sbjct: 289 GRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHG 348
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R REAL LF +++ + D FT+V +LTA A+LGAL G + I++ V+ D++ G
Sbjct: 349 GRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLG 408
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC V F TW+ MI GLA +G G AL+ F M
Sbjct: 409 TALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFH 468
Query: 166 PDEVAYVGVLSARTHN 181
+ V Y+ VL+A +H+
Sbjct: 469 ANSVTYIAVLTACSHS 484
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/163 (31%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KDV+++T ++SG +D AR+ + P R+ V WT +I GY R R EA+ F +
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALIDMYCKC-- 130
+ I DE T++ +L+A L L G + + DK + +D ALIDMY KC
Sbjct: 229 LSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLV-VALIDMYAKCGD 287
Query: 131 --------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
W MI G G+ D A +F QM
Sbjct: 288 TGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQM 330
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV TA++ Y+ +V+ A F QM RD W+ MI G + AL F +
Sbjct: 403 RDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWM 462
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ + T +++LTA ++ L+ G + Y D+ ++ ++I I+ Y
Sbjct: 463 KCDGFHANSVTYIAVLTACSHSCLLDEG---RLYFDEMRLLHNI---RPQIEHY------ 510
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
MI L SG D+A+D+ M ++P+ V + +LSA R H
Sbjct: 511 ---GCMIDLLGRSGLLDEAMDLVQTM---PMQPNAVIWASILSACRVH 552
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 55/143 (38%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+ +D V WTT+I G ++ +A L ARA
Sbjct: 159 ARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLL--------------------ARA- 197
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
V+N + TWT +I G + +G +A+D
Sbjct: 198 -----------------PVRNVV-----------------TWTGLISGYSRAGRAAEAVD 223
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
F+ ML I PDEV +G+LSA
Sbjct: 224 CFNSMLSDGIAPDEVTVIGMLSA 246
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 108/190 (56%), Gaps = 17/190 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M +DV ++ ++++GY ++ A + F MP R+ WT MI GY + ++ +AL
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKAL 199
Query: 68 TLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++F ++ M +E T+ S+L A ANLGALE+GE I+ Y N +++ NAL++M
Sbjct: 200 SMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEM 259
Query: 127 YCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y +C +W +MI+GLA+ G D+A+++F +MLR PD+V
Sbjct: 260 YARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVT 319
Query: 171 YVGVLSARTH 180
+VGVL A TH
Sbjct: 320 FVGVLLACTH 329
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+ A + FD +P+ L+ +I Y + +L+ ++ +E + + +A
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
A+L + + G + T+ K+ D+FA AL+DMY K TV+ TW
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 137 TTMIVGLAISGNGDKALDMFSQM 159
+MI G A G+ + AL++F M
Sbjct: 152 NSMIAGYARCGDLEGALELFRLM 174
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++ ++ +++SGY+++ VD AR FDQM +D W+ +I G + EAL LF+++
Sbjct: 151 ENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDM 210
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
S+ + +E +VS+L+A A+LGAL G WI YID+ I ALIDMY KC
Sbjct: 211 MVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDI 270
Query: 131 --TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
KF TW +I G AI G K ++F +ML I P+ V +V +LSA
Sbjct: 271 QSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSAC 330
Query: 179 TH 180
+H
Sbjct: 331 SH 332
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y+ ++ AR F+++P D ++ TMI G + R ++L LF E+ + D
Sbjct: 27 LLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGCLKPD 86
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--------CKCTVK 133
+T +L A +N AL G+ + I K + + ++LI MY +C ++
Sbjct: 87 NYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVLR 146
Query: 134 -------FTWTTMIVGLAISGNGDKALDMFSQM 159
+MI G G+ DKA MF QM
Sbjct: 147 EFSEENTLAKNSMISGYLSKGHVDKARAMFDQM 179
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 19/163 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + + F +MP RD V W +I G+ + ++ LF+E+ I
Sbjct: 258 TALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIY 317
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ V+IL+A ++ G +E G K Y ++ ++D+ + +++ + M
Sbjct: 318 PNGVIFVAILSACSHAGYVEEG---KLYFNQ-----------MMVDLGIRPSIEH-YGCM 362
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+ L +G +A + M KP+ V + +LSA RTHN
Sbjct: 363 VDLLGRAGRLKEAEEFIISMPE---KPNSVIWGSMLSACRTHN 402
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M +DVI++ +++ + + A + F +MPER+ WT+MI GY +
Sbjct: 164 IGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQC 223
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EA+ LF E++ + ++ +E T+V++L A A++G L LG I + +++ + +I
Sbjct: 224 GKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVC 283
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N LIDMY KC +W+ MI GLA G + AL +F++M+ +K
Sbjct: 284 NTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVK 343
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A +H
Sbjct: 344 PNAVTFIGILHACSH 358
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ F + + W T + + + +A++LF ++ +I D +T +L A +
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------------ 130
L + G+ + Y++K +++++F N ++ +Y C
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 131 ---TVKF-------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
VK +WT+MI G A G +A+D+F +M A + P+E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 169 VAYVGVLSA 177
V V VL A
Sbjct: 246 VTVVAVLVA 254
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ ++ Y+ ++ A + FD M ER V W+ MI G R +AL LF ++
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + + T + IL A +++G +E G ++ + + I ++D++ + +
Sbjct: 338 INTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGL 397
Query: 133 KFTWTTMIVGLAISGNG 149
I+ + I+ NG
Sbjct: 398 LQEAHEFIMNMPIAPNG 414
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY +R + A++ FD++P +D V W MI GY ++E
Sbjct: 120 KVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKE 179
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ N+ DE T V++L+A A+ G++ELG + +++D + +++ NALID
Sbjct: 180 ALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALID 239
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 240 LYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 299
Query: 171 YVGVLSARTH 180
+ VL A H
Sbjct: 300 MLSVLPACAH 309
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +V+ A F + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++S+L A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G D + D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 356 VFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 55/167 (32%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +T+++S Y+ +++ A + FD+ RD V +T +I GY R A LF
Sbjct: 98 DLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLF---- 153
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
DE + +++
Sbjct: 154 ------DEIPVKDVVS-------------------------------------------- 163
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W MI G A +G +AL++F +M++ +++PDE YV VLSA H+
Sbjct: 164 -WNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHS 209
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VS Y + +++AR FD+MP ++ V WT M+ +
Sbjct: 318 FELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVE 377
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF E+ + I D +VSIL A A G+L LG+ I ++ + K+ NAL+
Sbjct: 378 EAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALM 437
Query: 125 DMYCKCTVK----------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC +W +I G A+ G G+KAL++F+QM + PD
Sbjct: 438 DMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDA 497
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 498 VTLINVLSACTH 509
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + + +VD AR FD+MPE+D V W TM+DGY + +
Sbjct: 257 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEK 316
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++A G +E+ I DK KN +
Sbjct: 317 AFELFQRMPGRNVV----SWSTVVSAYCKKGDMEMARVI---FDKMPAKNLV-------- 361
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G ++A +F++M+ A+I+ D +A V +L+A
Sbjct: 362 ---------TWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAA 404
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 25 GYINREQVDIARQCFD-QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
G +NR A FD ++ E+D V W +I G+ +AL LF +++ D
Sbjct: 444 GCVNR-----ADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAV 498
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGL 143
T++++L+A ++G +E G F N D K ++ + M+ L
Sbjct: 499 TLINVLSACTHMGLVEEGRR--------------FFANMETDYGIKPQIEH-YGCMVDLL 543
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
G +A+DM +M +P+EV + +LSA R H
Sbjct: 544 GRGGLIKEAVDMIKRM---PWEPNEVIWGSLLSACRLH 578
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E+F M ++V+S++ +VS Y + +++AR FD+MP ++ V WT M+ +
Sbjct: 246 FELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVE 305
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EA LF E+ + I D +VSIL A A G+L LG+ I ++ + K+ NAL+
Sbjct: 306 EAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALM 365
Query: 125 DMYCKCTVK----------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
DM+CKC +W +I G A+ G G+KAL++F+QM + PD
Sbjct: 366 DMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDA 425
Query: 169 VAYVGVLSARTH 180
V + VLSA TH
Sbjct: 426 VTLINVLSACTH 437
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ ++ + + +VD AR FD+MPE+D V W TM+DGY + +
Sbjct: 185 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEK 244
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LFQ + N++ + ++++A G +E+ I DK KN +
Sbjct: 245 AFELFQRMPGRNVV----SWSTVVSAYCKKGDMEMARVI---FDKMPAKNLV-------- 289
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT M+ A G ++A +F++M+ A+I+ D +A V +L+A
Sbjct: 290 ---------TWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAA 332
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 25 GYINREQVDIARQCFD-QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF 83
G +NR A FD ++ E+D V W +I G+ +AL LF +++ D
Sbjct: 372 GCVNR-----ADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAV 426
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGL 143
T++++L+A ++G +E G F N D K ++ + M+ L
Sbjct: 427 TLINVLSACTHMGLVEEGRR--------------FFANMETDYGIKPQIEH-YGCMVDLL 471
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
G +A+DM +M +P+EV + +LSA R H
Sbjct: 472 GRGGLIKEAVDMIKRM---PWEPNEVIWGSLLSACRLH 506
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++ + K+++ T +V GY +V+IA F+ MP +D V W+ MI GY
Sbjct: 221 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 280
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++ EAL LF ++Q S + DE T++S+++A AN+GALE I ++++ + + + G
Sbjct: 281 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 340
Query: 121 NALIDMYCKC---TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDM+ KC T+ TWT++I A+ G+G AL +F M I+
Sbjct: 341 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQ 400
Query: 166 PDEVAYVGVLSARTH 180
P+ V ++G+L A H
Sbjct: 401 PNGVTFLGLLYACCH 415
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 46/204 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +V+ AR+ FD MP+RD V W M+D Y + + EAL LF ++ S ++
Sbjct: 108 TALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ I ++L+ A+ L G+ I +Y+ + D AL++MY C
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKL 227
Query: 131 -------------TVKF------------------------TWTTMIVGLAISGNGDKAL 153
T+ + +W+ MI G A S +AL
Sbjct: 228 YNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEAL 287
Query: 154 DMFSQMLRASIKPDEVAYVGVLSA 177
++F M R+ +KPDE+ + V+SA
Sbjct: 288 NLFHDMQRSGVKPDEITMLSVISA 311
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+A F+ MP+++ V WT++I R ALTLF+ +++ I + T + +L A
Sbjct: 355 LALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACC 414
Query: 94 NLGALELG 101
+ G +E G
Sbjct: 415 HAGLVEEG 422
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+V+GY +R ++ AR FD++P +D V W MI GY+ ++E
Sbjct: 119 KVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKE 178
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+V++++A A G++ELG + ++I + +++ NALID
Sbjct: 179 ALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALID 238
Query: 126 MYCKCTVKFTWTTMIVGLA----ISGN-----------GDKALDMFSQMLRASIKPDEVA 170
Y KC T + +GL+ IS N +AL +F +MLR+ P++V
Sbjct: 239 FYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVT 298
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 299 MLSILHACAH 308
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 17/177 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F + +D + W +I GY +N ++EAL LFQE+ S
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESP 294
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 295 NDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQ 354
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W MI G A+ G + A D+FS+M + IKPD++ +VG+LSA +H
Sbjct: 355 VFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSH 411
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G E+F KD++S+ +++ Y + AR+ FD P+RD V W MI GY+R
Sbjct: 196 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 255
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIF 118
++A+ LF+++Q D T++S+L+A A+ G ++ G + ++ +++
Sbjct: 256 GSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTV 315
Query: 119 AGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC TW ++I GLA+ G+ +A+D+F +ML+ +
Sbjct: 316 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGN 375
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPDE+ +V VL A +H
Sbjct: 376 VKPDEITFVAVLVACSHG 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 21/145 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN------IMGDEFTIVSI 88
AR FD++P D ++ T+I G R+A++++ + + + D+ T +
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFV 120
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVK 133
L A A +GA E G + ++ K ++D F NALI M+ C
Sbjct: 121 LRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDA 180
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQ 158
W+ MI G A G+ A ++F +
Sbjct: 181 VAWSAMISGFARRGDIGAARELFDE 205
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D A++ + + A FD D V W+ MI G+ R A LF E
Sbjct: 148 DAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESP 207
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+++ + ++TA A LG + ++F G D+
Sbjct: 208 VKDLV----SWNVMITAYAKLGDM-------------APARELFDGAPDRDV-------V 243
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G G+ +A+++F QM KPD V + +LSA
Sbjct: 244 SWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSA 286
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + F M +++ W ++I G EA+ +FQ++ N+
Sbjct: 319 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKP 378
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
DE T V++L A ++ G ++ G E+ + ++ ++ ++DM +
Sbjct: 379 DEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSR 428
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 108/182 (59%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+++I +TA++ Y+ +D AR+ FD+M +RD V W+TMI GY + R E+L LF+ +
Sbjct: 249 QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ ++ +E T+V +L+A A LG+ ELG I ++++ + + G+ALIDMY KC
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V TW +M+ GLA++G A+ ++ +M ++P+E+ +V +L+A
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 179 TH 180
TH
Sbjct: 429 TH 430
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +++F M KD I +++GY V AR+ FD M R W +MI Y
Sbjct: 136 MDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHG 195
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++EAL LF+ + + + TI ++ + A G LE G+W ++ I + ++N +
Sbjct: 196 GEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVH 254
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++MY KC W+TMI G A +G ++L++F +M S K
Sbjct: 255 TALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCK 314
Query: 166 PDEVAYVGVLSA 177
P+EV VGVLSA
Sbjct: 315 PNEVTLVGVLSA 326
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 12 KNKDVISY--TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALT 68
+N + SY +A++ Y V AR F++M + + W +M+ G L +N F ++A+T
Sbjct: 346 QNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAIT 404
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMY 127
L++E+ ++ +E T V++LTA + G ++ G + K + V + ++D+
Sbjct: 405 LYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLL 464
Query: 128 CK 129
CK
Sbjct: 465 CK 466
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD +P L T+I R+ +E L F + + ++ + A
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-----CTVK----------FTWTTM 139
L A G+ + + + DIF AL+D Y K C VK +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 140 IVGLAISGNGDKALDMFSQMLR 161
I G + SG+ KA +F M+R
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVR 179
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M KD +++ +++ GYI VD A FDQ+P R V WT +I G+++ +
Sbjct: 167 AVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQP 226
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
AL LF + TIV +L+A A++GAL+LG I Y K +I NAL
Sbjct: 227 VRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNAL 286
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DMY K FTWTTMI + G+G KAL++F MLRA + P+
Sbjct: 287 MDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNS 346
Query: 169 VAYVGVLSARTHN 181
V +V VLSA +H+
Sbjct: 347 VTFVSVLSACSHS 359
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 46/198 (23%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y + +V AR+ FD++P D + +T+++ +L+++ REA++LF + + D F +
Sbjct: 57 YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK------- 133
V L+A + G +G + I + + ++ GNALIDMY +C VK
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176
Query: 134 ----------------------------------FTWTTMIVGLAISGNGDKALDMFSQM 159
WT +I G +AL++F +M
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236
Query: 160 LRASIKPDEVAYVGVLSA 177
+ +P V VGVLSA
Sbjct: 237 VLEGHRPTHVTIVGVLSA 254
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 1 MGFTLEIFGTMKNK--DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G + +G+ N ++I A++ Y +++A F ++ +D WTTMI
Sbjct: 263 LGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCT 322
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
++AL LFQ++ + ++ + T VS+L+A ++ G +E G
Sbjct: 323 VQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEG 365
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + AR FD RD ++WT M+ Y + N +A LF +++TS +
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+ TIVS+L+ A GAL+LG+W+ +YIDK +V+ D AL+DMY KC
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W +I G A+ G G++ALD+F++M R +KP+++ ++G+L A +H
Sbjct: 457 FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V + TA++ Y + +ARQ F+ + ++ V WT MI G +R NR E LF +Q
Sbjct: 232 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VK- 133
NI +E T++S++ GAL+LG+ + YI +N + AL+DMY KC+ ++
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRN 351
Query: 134 -------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
WT M+ A + D+A ++F QM + ++P +V V +LS
Sbjct: 352 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV A++ Y V+ AR FD+M ERD V W+TMI R F AL L +E
Sbjct: 126 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 185
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI--DKNKVKNDIFAGNALIDMYCKC 130
+ + E +VS++ A+ + +G+ + Y+ + N + AL+DMY KC
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245
Query: 131 ---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+WT MI G S ++ +F +M +I P+E+ + ++
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 15/109 (13%)
Query: 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKF------- 134
F S+L A + +LG+ I ++ K + D+F GNAL+ MY +C V++
Sbjct: 95 FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154
Query: 135 -------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W+TMI L+ + D AL++ +M ++P EVA V +++
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVN 203
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I TA+V Y ++ A + F + RD +W +I G+ EAL +F E++
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ ++ T + +L A ++ G + G K +K F I+ Y C V
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEG---KKLFEK---MVHTFGLVPQIEHY-GCMVDL 545
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L +G D+A +M M IKP+ + + +++A R H
Sbjct: 546 --------LGRAGLLDEAHEMIKSM---PIKPNTIVWGALVAACRLH 581
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 20/189 (10%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K V+S+ +++ YI V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
E+Q + + E T++SIL A A GALE+G I + + K + + GNAL++MYCKC
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335
Query: 131 ----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM---LRASIKPDEVAY 171
TV W M++GLA+ G ++ +F++M L SI+PD V +
Sbjct: 336 GNLSLAWEIFNGMKMKTVS-CWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTF 394
Query: 172 VGVLSARTH 180
+GVL A +H
Sbjct: 395 IGVLVACSH 403
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/190 (37%), Positives = 111/190 (58%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + ++ D S+ +++SGY+ +V+ A+ F+ MP++D V W+ MI G ++ N+ EA
Sbjct: 326 LFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEA 385
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LT+F ++ I DE T+VS+++A NL ALE G+ + YI + + I G +LIDM
Sbjct: 386 LTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDM 445
Query: 127 YCKCTV-------------KFT--WTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVA 170
Y KC K T W +IVGLA++G ++LDMFS+M + I P E+
Sbjct: 446 YMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEIT 505
Query: 171 YVGVLSARTH 180
+ GVLSA H
Sbjct: 506 FTGVLSACRH 515
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 46/220 (20%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + + +++V+ + V+ AR FD RD WT MI + R + F EA
Sbjct: 194 VFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEA 253
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F +++ DE +VS++ A A ++ GE + + + + + NALI M
Sbjct: 254 LAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHM 313
Query: 127 YCKC----------------------------------------------TVKFTWTTMI 140
Y C +W+ MI
Sbjct: 314 YSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMI 373
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
G + +AL +F M IKPDEV V V+SA T+
Sbjct: 374 AGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTN 413
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+++++ A++ GY +++AR+ F+ MPE+D V W+++IDGY++ + E
Sbjct: 169 KVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGE 228
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+ + M +E T+VS L A A+LGALE G + YI +N++ I +L+D
Sbjct: 229 AMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVD 288
Query: 126 MYCKCTV-----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC W +I GLA G +A+++F +M I PDE
Sbjct: 289 MYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDE 348
Query: 169 VAYVGVLSARTH 180
+ Y+ +LS H
Sbjct: 349 ITYLCLLSCCAH 360
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
FTL G +++ + S + S +D + + +P W T+I +
Sbjct: 37 FTL---GISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKN 93
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
++T+F ++ + + D T ++ A + L ELG + +I K+ + D F N+
Sbjct: 94 PNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNS 153
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
LI MY C TW M+ G A G+ + A ++F+ M
Sbjct: 154 LIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLM 205
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 29 REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
E + + R C + E D ++W +I G +EA+ LF E++ I+ DE T + +
Sbjct: 297 HEALTVFRAC--SLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCL 354
Query: 89 LTARANLGALE 99
L+ A+ G +E
Sbjct: 355 LSCCAHGGLVE 365
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F+++P +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G D + D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY +R ++ A++ FD++P +D V W MI GY ++E
Sbjct: 190 KVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 249
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+++ +N+ DE T+V++++A A G++ELG + +ID + +++ NALID
Sbjct: 250 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALID 309
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +W T+I G +AL +F +MLR+ P++V
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 370 MLSILPACAH 379
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M N+DV + A+++GY R + A + FD MP ++ WTT+I G+ + + EA
Sbjct: 139 VFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEA 198
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
LT+F ++ ++ + T+VS+L A ANLG LE+G ++ Y +N ++I+ NA ++
Sbjct: 199 LTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLE 258
Query: 126 MYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC + +W +MI LA G D+AL++++QML+ +PD V
Sbjct: 259 MYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAV 318
Query: 170 AYVGVLSARTH 180
+VG+L A H
Sbjct: 319 TFVGLLLACVH 329
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 40/203 (19%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ ++F +N + Y ++ Y Q P VL+ + +R N
Sbjct: 34 YARKLFDLHRNPCIFLYNKLIQSYSVHHQ-----------PHESIVLYNLLSFDGIRPNH 82
Query: 63 F---------------REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
R L + S D F +++TA A LGAL +
Sbjct: 83 HTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDE 142
Query: 108 IDKNKV------------KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM 155
+ V + D+ A L D V +WTT+I G + +GN +AL M
Sbjct: 143 MSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVT-SWTTVISGFSQNGNYSEALTM 201
Query: 156 FSQMLR-ASIKPDEVAYVGVLSA 177
F M + S+KP+ + V VL A
Sbjct: 202 FLCMEKDKSVKPNHITLVSVLPA 224
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 32 VDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D+A++ FD++ +R+ + W +MI + EAL L+ ++ D T V +L
Sbjct: 266 IDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLL 325
Query: 91 ARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG 149
A + G + G E +K+ + +K+ + +ID+ L G
Sbjct: 326 ACVHGGMVLKGKELLKSMEEVHKISPKLEHYGCMIDL----------------LGRVGKL 369
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA 177
+A D+ M +KPD V + +L A
Sbjct: 370 QEACDLIKTM---PMKPDAVVWGTLLGA 394
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +M ++V+S++ +VSGY +++AR FD+MP ++ V WT ++ GY ++A
Sbjct: 65 LFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDA 124
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ F++++ + + D+ T++SIL + A G L LG+ + T I++ + K + NAL+DM
Sbjct: 125 IRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDM 184
Query: 127 YCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +W M+ GLA+ G+G+KAL +FS M + +PD+V
Sbjct: 185 YAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTL 244
Query: 172 VGVLSARTH 180
V VL A H
Sbjct: 245 VAVLCACVH 253
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 24/173 (13%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+ +F M +DV+S+ +++ G + ++ A + FD+MP +D V W T++DGY++
Sbjct: 1 MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMN 60
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+A LF+ + N++ + ++++ G +E+ + D+ VKN +
Sbjct: 61 KAFGLFESMPERNVV----SWSTMVSGYCKAGDMEMA---RMLFDRMPVKNLV------- 106
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT ++ G A+ G A+ F QM A +KPD+ + +L++
Sbjct: 107 ----------SWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILAS 149
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y QVD A F+ M ++D V W M+ G +AL LF ++
Sbjct: 179 NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T+V++L A + G ++ G
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEG 260
>gi|413943921|gb|AFW76570.1| hypothetical protein ZEAMMB73_758095 [Zea mays]
Length = 397
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 108/191 (56%), Gaps = 15/191 (7%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+++F M +++IS+T +VSGY Q + AR + Q ++D +LWT MI+ ++ F
Sbjct: 155 VKMFEQMPERNIISWTILVSGYGITGQSNKARVLYYQCTQKDLILWTAMINACVQHGSFD 214
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EALTLFQ++Q ++ D+F+++++LT AN+GA + EWI Y + +K D L+
Sbjct: 215 EALTLFQDMQLQHVEPDKFSVITLLTCYANIGAFDQCEWIHWYAEDKNMKIDAVRDTTLM 274
Query: 125 DMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+M KC +++ WT +I GL +G KAL++F + R+ KPD +
Sbjct: 275 EMCSKCGHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGI 334
Query: 170 AYVGVLSARTH 180
+ VLSA H
Sbjct: 335 TFTRVLSACCH 345
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
VD + Q F +M +D V WT +I G + +AL LF+E Q S D T +L+
Sbjct: 282 HVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVLS 341
Query: 91 ARANLGALELGE 102
A + G ++ G+
Sbjct: 342 ACCHGGLVDEGQ 353
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 110/177 (62%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
++++S Y V+ AR+ F M ER+ V WT+MI GY ++ +F+EA+ LF+++Q + +
Sbjct: 235 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMK 294
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ A +GAL+LG ++ Y D + + ++ N+LIDMY KC
Sbjct: 295 VDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
T + F+WT MI+G ++G +ALD+F+QM + P+EV ++GVL++ +H
Sbjct: 355 FCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 411
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQE 72
D ++++ Y + ARQ D P+ D V W T+I GYLR +AL F +
Sbjct: 127 DTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQ 186
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + D+ T+++ L A A G +++G + + N + + G++LI MY KC +
Sbjct: 187 MVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGL 246
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT+MI G G +A+++F M +K D+ V+S+
Sbjct: 247 VEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSS 306
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT----- 135
D +++ +A + L ++ +G + + K + +D F N+LI+MY C+ T
Sbjct: 92 DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVL 151
Query: 136 ------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W T+I G G +KAL F QM++ + D+V + L A
Sbjct: 152 DSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVA 205
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ +++ Y ++ A + F + +RD WT MI G+ EAL LF ++
Sbjct: 330 KELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQM 389
Query: 74 Q-TSNIMGDEFTIVSILTARANLGALELG 101
+ +M +E T + +LT+ ++ G +E G
Sbjct: 390 EGEGKVMPNEVTFLGVLTSCSHGGLVEQG 418
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + D S+ ++++GY+ V A++ F MP++D V WTTMI G ++ ++ EA
Sbjct: 323 LFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEA 382
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LT+F +Q I DE T+VS+++A N+ +LE G+ + YI +++ + G +LIDM
Sbjct: 383 LTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDM 442
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVA 170
Y KC + W +IVGLA++G K+LDMFS+M +S P+E+
Sbjct: 443 YMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEIT 502
Query: 171 YVGVLSARTH 180
+ GVLSA H
Sbjct: 503 FTGVLSACRH 512
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + + +++VS + R VD AR+ FD + +D WT MI + R +F EA
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +++ DE +V ++ A A L GE + + + + NALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 127 YC---------------KCTVKFTWTTMIVGLAISGN----------------------- 148
Y +C +F+W +MI G +G+
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMI 370
Query: 149 --------GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+AL +F+ M IKPDEV V V+SA T+
Sbjct: 371 SGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + D S+ ++++GY+ V A++ F MP++D V WTTMI G ++ ++ EA
Sbjct: 323 LFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEA 382
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LT+F +Q I DE T+VS+++A N+ +LE G+ + YI +++ + G +LIDM
Sbjct: 383 LTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDM 442
Query: 127 YCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVA 170
Y KC + W +IVGLA++G K+LDMFS+M +S P+E+
Sbjct: 443 YMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEIT 502
Query: 171 YVGVLSARTH 180
+ GVLSA H
Sbjct: 503 FTGVLSACRH 512
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + + +++VS + R VD AR+ FD + +D WT MI + R +F EA
Sbjct: 191 VFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEA 250
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF +++ DE +V ++ A A L GE + + + + NALI M
Sbjct: 251 LALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHM 310
Query: 127 YC---------------KCTVKFTWTTMIVGLAISGN----------------------- 148
Y +C +F+W +MI G +G+
Sbjct: 311 YSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMI 370
Query: 149 --------GDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+AL +F+ M IKPDEV V V+SA T+
Sbjct: 371 SGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 107/177 (60%), Gaps = 17/177 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ--TSNI 78
A+++ Y + + + FD+MP RD + W+++I + + EALTLFQ++Q S+I
Sbjct: 133 ALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDI 192
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK 133
+ D ++S+++A ++LGALELG W+ +I + V + G+ALIDMY +C +VK
Sbjct: 193 LPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVK 252
Query: 134 ----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TWT +I GLA+ G G +AL+ F M+ + +KPD +A++GVL A +H
Sbjct: 253 VFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSH 309
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y +D + + FD+MP R+ V WT +I+G R REAL F ++ S +
Sbjct: 235 SALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLK 294
Query: 80 GDEFTIVSILTARANLGALELG 101
D + +L A ++ G +E G
Sbjct: 295 PDRIAFMGVLVACSHGGLVEEG 316
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 115/194 (59%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M++++++S+ ++G I +V++A F+QMP R V WT +IDGY R N+ +
Sbjct: 193 QVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIK 252
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNAL 123
ALTLF++ I+ I E T+++I A AN+G +++ + + Y++K D+ NAL
Sbjct: 253 ALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNAL 312
Query: 124 IDMYCKCTV-----KF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
+D+Y KC +F +WT+ I G A++G G +AL+ F M +A ++P
Sbjct: 313 LDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRP 372
Query: 167 DEVAYVGVLSARTH 180
+ V ++GVLSA +H
Sbjct: 373 NHVTFLGVLSACSH 386
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQ------------VDIARQC---------FDQMP 43
L IF + N I V GY+ + +D+ +C F ++P
Sbjct: 274 LTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIP 333
Query: 44 E--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
+ R+ V WT+ I G+ REAL F+ ++ + + + T + +L+A ++ G +E G
Sbjct: 334 DQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEG 393
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 101/185 (54%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M+ DV+S+ A+V GY+ ++ +A + F+ MPERD V W T++ G + R +A+ LF
Sbjct: 1 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 60
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ D+ + ++L+ A LGAL+ G+ + Y+ + + + +++ ++D+Y KC
Sbjct: 61 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 120
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
FTW +IVGLA+ G+G ALD F +ML +PD ++GVL
Sbjct: 121 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 180
Query: 176 SARTH 180
+H
Sbjct: 181 IGCSH 185
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T +V T IV Y +V++AR+ FD PE++ W +I G AL
Sbjct: 101 TRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDY 160
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYC 128
F + D T + +L ++ G ++ I + N V ++ + D+
Sbjct: 161 FDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADL-- 218
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A++M S M ++ D + G+L+ R H
Sbjct: 219 --------------LGRAGLIDEAMEMISSM---PMEADTYVWGGILAGCRMHG 255
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + N ++I TAI+ Y IAR F++MP+R+ V W +MI+ Y + R +EAL
Sbjct: 228 FMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEAL 287
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF ++ TS I D+ T +S+L+ A+L AL LG+ + Y+ K + DI AL+DMY
Sbjct: 288 DLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMY 347
Query: 128 CK------CTVKFT---------WTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAY 171
K F+ WT+MI GLA+ G+G++AL MF M +S+ PD + Y
Sbjct: 348 AKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITY 407
Query: 172 VGVLSARTH 180
+GVL A +H
Sbjct: 408 IGVLFACSH 416
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + T ++ Y++ + + FD +P + V WT +I GY+ N+ EAL +F+++
Sbjct: 127 DAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMS 186
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-------NKVKNDIFAGNALIDMY 127
+ +E T+V+ L A + G+W+ +I K + ++I A+++MY
Sbjct: 187 HCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMY 246
Query: 128 CKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC + K +W +MI +ALD+F M + I PD+ ++
Sbjct: 247 AKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFL 306
Query: 173 GVLSARTH 180
VLS H
Sbjct: 307 SVLSVCAH 314
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ +W +MI G++ + R ++ L++++ + D FT +L A +
Sbjct: 50 FRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVLKACCAIADQ 109
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----VK----------FTWTTMIVGL 143
+ G+ I I K+ + D + L+ MY C +K WT +I G
Sbjct: 110 DCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGY 169
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+ +AL +F M ++P+E+ V L
Sbjct: 170 VNNNQPYEALKVFKDMSHCGVEPNEITMVNAL 201
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D A + FD MP ++ V W MI GY +R+ EA
Sbjct: 167 VFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEA 226
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 227 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 286
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 287 MFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 346
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 347 FIAALAACAH 356
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 73 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 132
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I + A G +E + +D + D+ + A++
Sbjct: 133 AWAVFDRMPSRNAVSWNLMI----SGYATSGDVEAARSVFDRMD----QKDVVSWTAMVS 184
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 185 AYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 244
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 245 TLVSVVSA 252
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V A+ F +M R + WTTMI G+ R+AL ++ + +
Sbjct: 283 ALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQL 342
Query: 81 DEFTIVSILTARANLGALELG 101
D+ ++ L A A+ G L+ G
Sbjct: 343 DDTVFIAALAACAHGGLLQEG 363
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/177 (34%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
++++S Y V+ AR+ F M ER+ V WT+MI GY ++ +F++A+ LF+++Q + +
Sbjct: 99 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMK 158
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ A +GAL+LG ++ Y D + + ++ N+LIDMY KC
Sbjct: 159 ADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHEI 218
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
T + F+WT MI+G ++G ++ALD+F+QM + P+EV ++GVL++ +H
Sbjct: 219 FCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 275
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 35 ARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
ARQ D P+ D V W T+I GYLR +AL F ++ + D+ T+++ L A
Sbjct: 11 ARQVLDSAPQGACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVAS 70
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWT 137
A G ++G + + N + + G++LI MY KC + WT
Sbjct: 71 AKAGKAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWT 130
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+MI G G KA+D+F M +K D+ V+S+
Sbjct: 131 SMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSS 170
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K++ +++ Y + A + F + +RD WT MI G+ EAL LF ++
Sbjct: 194 KELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQM 253
Query: 74 Q-TSNIMGDEFTIVSILTARANLGALELG 101
+ +M +E T + +LT+ ++ G +E G
Sbjct: 254 EGEGKVMPNEVTFLGVLTSCSHGGLVEQG 282
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 111/178 (62%), Gaps = 17/178 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
++++S Y QV+ AR+ FD MP+R+ V WT+MI GY ++ + +EA+ LF+++Q + +
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+ TI +++++ +GAL+LG ++ Y D + + DI N+LIDMY KC
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 131 ---TVK---FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSARTHN 181
VK F+W T+I+G A +G +ALD+F+QM + P+E+ ++GVL++ +H
Sbjct: 355 FCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHG 411
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLF 70
+ D +++ Y + AR D P+ D V W T+I GY+ +AL F
Sbjct: 125 SSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAF 184
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ +M D+ T+++ L A A +++G+ + N + + + G++LI MY KC
Sbjct: 185 SQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKC 244
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
WT+MI G G +A+ +F M A +K D+ V+
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 176 SA 177
S+
Sbjct: 305 SS 306
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT----- 135
D +++ + L+ A + ++ +G + K + +D F N LI+MY C+ T
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 136 ------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W T+I G +G +KAL FSQM + + D+V + L A
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVA 205
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K ++S TA+++ Y +D AR FD + ERD + W MIDGY + E L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+++ + + +E T++++L+A GALE G W+ +YI+ N + ++ G +LIDMY KC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
W +M+VG A+ G AL +F +M +P ++ ++GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 176 SARTH 180
+A +H
Sbjct: 181 NACSH 185
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ AR F+++ +D V W +M+ GY ++AL LF+E+
Sbjct: 111 TSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQ 170
Query: 80 GDEFTIVSILTARANLGALELG 101
+ T + +L A ++ G + G
Sbjct: 171 PTDITFIGVLNACSHAGLVSEG 192
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 103/188 (54%), Gaps = 15/188 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M ++++S+ ++ GY+ + + A Q FD +P ++ + WT +I G+++ + EAL
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEAL 212
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+E+Q S + D T+++++ A ANLG L LG W+ + +N++ N+LIDMY
Sbjct: 213 ECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMY 272
Query: 128 CKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+C +W ++IVG A++G D+AL F+ M KPD V+Y
Sbjct: 273 SRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYT 332
Query: 173 GVLSARTH 180
G L A +H
Sbjct: 333 GALMACSH 340
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D+ARQ FD+MP+R V W ++I G+ EAL+ F +Q D + L A
Sbjct: 278 IDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMA 337
Query: 92 RANLGALELGEWIKTYIDKNKVKN---DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
++ G +GE ++ + +V+ I L+D+Y + +G
Sbjct: 338 CSHAGL--IGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSR----------------AGR 379
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL++ M +KP+EV +L+A
Sbjct: 380 LEEALNVLKNM---PMKPNEVILGSLLAA 405
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL---GALELGEWI 104
V WTT I Y + +A + F +++ + I + T +++L+A A+ ++ G I
Sbjct: 57 VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116
Query: 105 KTYIDKNKVK-NDIFAGNALIDMYCKC------TVKF---------TWTTMIVGLAISGN 148
++ K + ND+ G ALIDMY KC + F +W TMI G +G
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176
Query: 149 GDKALDMF 156
+ AL +F
Sbjct: 177 FEDALQVF 184
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+WTT I SG+ KA F QM A+I+P+ + ++ +LSA H
Sbjct: 58 SWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 22/197 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++SYTA+++ Y + AR F+ M +D V W MIDGY + E
Sbjct: 173 KLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNE 232
Query: 66 ALTLFQEIQTS-------NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
AL F+++ + +E T+V++L++ +GALE G+W+ +Y++ N +K ++
Sbjct: 233 ALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVR 292
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G AL+DMYCKC W +MI+G I G D+AL +F +M
Sbjct: 293 VGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIG 352
Query: 164 IKPDEVAYVGVLSARTH 180
+KP ++ +V VL+A H
Sbjct: 353 VKPSDITFVAVLTACAH 369
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR+ FD M +D V W +MI GY EAL LF E+ +
Sbjct: 295 TALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVK 354
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T V++LTA A+ G + G W ++F +++ D Y + M
Sbjct: 355 PSDITFVAVLTACAHAGLVSKG-W------------EVF--DSMKDGYGMEPKVEHYGCM 399
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+ L +G +A D+ M ++PD V + +L A R H+
Sbjct: 400 VNLLGRAGRMQEAYDLVRSM---EVEPDPVLWGTLLWACRIHS 439
Score = 38.9 bits (89), Expect = 0.87, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F + P + LWT +I+ + + F AL+ + ++ T I + FT+ S+L A L
Sbjct: 78 FHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKA----CTL 133
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ ++ K + + ++ L+D Y +
Sbjct: 134 HPARAVHSHAIKFGLSSHLYVSTGLVDAYAR 164
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D A + FD MP ++ V W MI GY +R+ EA
Sbjct: 268 VFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEA 327
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 328 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 387
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 388 MFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 447
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 448 FIAALAACAH 457
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 174 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 233
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I T+ G +E + +D + D+ + A++
Sbjct: 234 ARAVFDRMPSRNAVSWNLMISGYATS----GDVEAARSVFDRMD----QKDVVSWTAMVS 285
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 286 AYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 345
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 346 TLVSVVSA 353
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V A+ F +M R + WTTMI G+ R+AL ++ + +
Sbjct: 384 ALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQL 443
Query: 81 DEFTIVSILTARANLGALELG 101
D+ ++ L A A+ G L+ G
Sbjct: 444 DDTVFIAALAACAHGGLLQEG 464
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D A + FD MP ++ V W MI GY +R+ EA
Sbjct: 264 VFDRMDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEA 323
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 324 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 383
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 384 MFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 443
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 444 FIAALAACAH 453
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 170 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 229
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I T+ G +E + +D + D+ + A++
Sbjct: 230 ARAVFDRMPSRNAVSWNLMISGYATS----GDVEAARSVFDRMD----QKDVVSWTAMVS 281
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 282 AYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 341
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 342 TLVSVVSA 349
Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ + V A+ F +M R + WTTMI G+ R+AL ++ + +
Sbjct: 380 ALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQL 439
Query: 81 DEFTIVSILTARANLGALELG 101
D+ ++ L A A+ G L+ G
Sbjct: 440 DDTVFIAALAACAHGGLLQEG 460
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV + A+++GY R + A + FD MP ++ WTT+I G+ + + EA
Sbjct: 132 VFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEA 191
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++ ++ + T+VS+L A ANLG LE+G ++ Y +N ++I+ NA I+
Sbjct: 192 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 251
Query: 126 MYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC + +W +MI LA G D+AL +F+QMLR KPD V
Sbjct: 252 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAV 311
Query: 170 AYVGVLSARTH 180
+VG+L A H
Sbjct: 312 TFVGLLLACVH 322
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---------- 113
R L + S D F +++TA A LGAL + + K V
Sbjct: 92 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 151
Query: 114 --KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 170
+ D+ A L D + V +WTT+I G + +GN +AL MF M + S+KP+ +
Sbjct: 152 QRRGDMKAAMELFDSMPRKNVT-SWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHIT 210
Query: 171 YVGVLSA 177
V VL A
Sbjct: 211 VVSVLPA 217
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%)
Query: 21 AIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A + Y +D+A++ F+++ +R+ W +MI + EALTLF ++
Sbjct: 248 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 307
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D T V +L A + G + G E K+ + +K+ + +ID+
Sbjct: 308 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 355
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L G +A D+ M +KPD V + +L A
Sbjct: 356 ----LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGA 387
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+++++ A++ GY +++AR+ F+ MPE+D V W+++IDGY++ + E
Sbjct: 169 KVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGE 228
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+ + M +E T+VS L A A+LGALE G + YI +N++ I +L+D
Sbjct: 229 AMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVD 288
Query: 126 MYCKCTV-----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC W +I GLA G +A+++F +M I PDE
Sbjct: 289 MYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDE 348
Query: 169 VAYVGVLSARTH 180
+ Y+ +LS H
Sbjct: 349 ITYLCLLSCCAH 360
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
FTL G +++ + S + S +D + + +P W T+I +
Sbjct: 37 FTL---GISQDETIKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKN 93
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
++T+F ++ + + D T ++ A + L ELG + +I K+ + D F N+
Sbjct: 94 PNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNS 153
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
LI MY C TW M+ G A G+ + A ++F+ M
Sbjct: 154 LIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLM 205
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 29 REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
E + + R C + E D ++W +I G +EA+ LF E++ I+ DE T + +
Sbjct: 297 HEALTVFRAC--SLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCL 354
Query: 89 LTARANLGALE 99
L+ A+ G +E
Sbjct: 355 LSCCAHGGLVE 365
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 112/196 (57%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E F M +++ TA+VSGY ++D A+ FDQ ++D V WTTMI Y+
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EAL +F+E+ S I D ++ S+++A ANLG L+ +W+ + I N +++++
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY KC +W++MI L++ G AL +F++M + +++
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 166 PDEVAYVGVLSARTHN 181
P+EV +VGVL +H+
Sbjct: 443 PNEVTFVGVLYGCSHS 458
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D T + Y + +++ AR FD+M RD V W TMI+ Y R EA LF+E++
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND---------IFAGNALID 125
SN+M DE + +I++A G + I ++ +N V+ D ++AG +D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 126 M----------------------YCKC------TVKF---------TWTTMIVGLAISGN 148
M Y KC V F WTTMI S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M + IKPD V+ V+SA
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y +D R F++MP R+ V W++MI+ +AL+LF ++ N+
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+E T V +L ++ G +E G+ I + D+ + + ++D++ + +
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALE 502
Query: 139 MIVGLAISGN 148
+I + ++ N
Sbjct: 503 VIESMPVASN 512
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 111/192 (57%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +M+ K+++S+ +++ GY ++ +A++ F+ M ERD W++ IDGY++ +RE
Sbjct: 170 KVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYRE 229
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F++++ +E T+VS+L+A A+LGAL+ G + YI N + + +L+D
Sbjct: 230 AMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVD 289
Query: 126 MYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC T F W MI GLA G +++L +F +M A I+ DE
Sbjct: 290 MYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDE 349
Query: 169 VAYVGVLSARTH 180
+ Y+ +L+A H
Sbjct: 350 ITYLCLLAACAH 361
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 78/211 (36%), Gaps = 50/211 (23%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
++S++A+ N +D + + F Q+ W +I GY +L++F ++
Sbjct: 52 ILSFSALS----NSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLR 107
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----- 130
+ D T ++ A A L + G + I K ++D F N+LI MY C
Sbjct: 108 HGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMW 167
Query: 131 ------------TVKF-----------------------------TWTTMIVGLAISGNG 149
V + +W++ I G +G
Sbjct: 168 AHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEY 227
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+A+ +F +M K +EV V VLSA H
Sbjct: 228 REAMAVFEKMRAVGPKANEVTMVSVLSACAH 258
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
+ D +W MI G E+L LF+E+Q + I DE T + +L A A+ G
Sbjct: 311 QTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGG 363
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY +R ++ A++ FD++P +D V W MI GY ++E
Sbjct: 147 KVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKE 206
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+++ +N+ DE T+V++++A A G++ELG + ++ID + +++ NALID
Sbjct: 207 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALID 266
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC T W T+I G +AL +F +MLR+ P++V
Sbjct: 267 LYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 326
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 327 MLSILPACAH 336
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F+ +P +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 323 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQ 382
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G D + D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 383 VFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++ GY + ++IA + F+ MP R+ V W M+ Y+R+ + E
Sbjct: 277 DLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDE 336
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALI 124
L +F ++ M +E T+VS+LTA A+LG L+ G+WI +YI N+V + D+ AL+
Sbjct: 337 CLRMFDKMM-GETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALL 395
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC +W +MI+G + G DKAL+MF M + P++
Sbjct: 396 TMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDA 455
Query: 170 AYVGVLSARTHN 181
++ VLSA H+
Sbjct: 456 TFICVLSACAHS 467
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV+ TA+++ Y +D+AR FD+M R V W +MI GY + +AL +F ++
Sbjct: 386 PDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 445
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW 103
+ M ++ T + +L+A A+ G + G W
Sbjct: 446 EKRGPMPNDATFICVLSACAHSGMILEGWW 475
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 31/182 (17%)
Query: 9 GTMKNKDVISYTAIVSGYINR---------------EQVDIARQCFDQMPERDYVLWTTM 53
G+ K + I IVSG + + + V A F+ + E D + T+
Sbjct: 70 GSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNTI 129
Query: 54 IDGYLRVNRFREALTLF-QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
+ Y+ VN AL + +++ + + +T ++ +G++ GE I I K
Sbjct: 130 MRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFG 189
Query: 113 VKNDIFAGNALIDMY---------------CKCTVKFTWTTMIVGLAISGNGDKALDMFS 157
+ D+F N+LI MY C + TW +MI G +G A ++F
Sbjct: 190 FELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFE 249
Query: 158 QM 159
+M
Sbjct: 250 EM 251
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV + A+++GY R + A + FD MP ++ WTT+I G+ + + EA
Sbjct: 139 VFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEA 198
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++ ++ + T+VS+L A ANLG LE+G ++ Y +N ++I+ NA I+
Sbjct: 199 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 258
Query: 126 MYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC + +W +MI LA G D+AL +F+QMLR KPD V
Sbjct: 259 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAV 318
Query: 170 AYVGVLSARTH 180
+VG+L A H
Sbjct: 319 TFVGLLLACVH 329
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---------- 113
R L + S D F +++TA A LGAL + + K V
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 114 --KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 170
+ D+ A L D + V +WTT+I G + +GN +AL MF M + S+KP+ +
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVT-SWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHIT 217
Query: 171 YVGVLSA 177
V VL A
Sbjct: 218 VVSVLPA 224
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%)
Query: 21 AIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A + Y +D+A++ F+++ +R+ W +MI + EALTLF ++
Sbjct: 255 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 314
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D T V +L A + G + G E K+ + +K+ + +ID+
Sbjct: 315 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 362
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L G +A D+ M +KPD V + +L A
Sbjct: 363 ----LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGA 394
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M +DV+S++ +++ ++ Q+D AR FDQMP RD V WT MI Y R +R ++
Sbjct: 178 RVFDEMPVRDVVSFSGLLTAHLKNNQLDSARMVFDQMPHRDVVSWTAMISAYARASRPQD 237
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF + + DE T+VS+++A LG L GE ++ Y+D N + NAL+D
Sbjct: 238 ALALFDAMP---VQPDEVTMVSVVSACTALGDLATGERLRLYVDSNGFGWMVSLRNALMD 294
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDE 168
MY KC +W T+I+ A G+ + + +F QML S+KPD
Sbjct: 295 MYAKCGCLPEARELFDGMAIRSLASWNTLILAYASHGDEESTIALFHQMLAHDNSVKPDG 354
Query: 169 VAYVGVLSARTHN 181
V + VL+ H
Sbjct: 355 VTLLAVLTMYAHK 367
>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 599
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 113/192 (58%), Gaps = 18/192 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M +DV+S+T++V Y ++D A + F +MP ++ V WT++I G+ + +A
Sbjct: 156 IFSRMFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKA 215
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF---AGNAL 123
L LF ++Q N++ FT V++L A A+L +E G+ I +I ++ + D+F NAL
Sbjct: 216 LELFLQMQEENVLPSAFTFVTVLGACADLALIERGKQIHGHIIRSSGRTDLFNMYVYNAL 275
Query: 124 IDMYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMYCKC + K +W ++I GLA +G+ +++LD+F +M+ + P+
Sbjct: 276 IDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNH 335
Query: 169 VAYVGVLSARTH 180
V + GVLSA +H
Sbjct: 336 VTFSGVLSACSH 347
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 28/189 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F K++ S+ ++ GY D AR FD+MPE + + + ++I G
Sbjct: 63 KVFDDNPIKNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISG--------- 113
Query: 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTY-IDKNKVKNDIFAGNAL 123
+L L +++ + I+ G EF ++ + G + G+ +Y I + D+ + ++
Sbjct: 114 SLDLLRQVHGAAILIGLEFNVIVYNALIDSYG--KCGQHNTSYCIFSRMFERDVVSWTSM 171
Query: 124 IDMYCKCT-------------VKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+D Y + + VK T WT++I G A +G+ KAL++F QM ++ P
Sbjct: 172 VDAYARASRMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSA 231
Query: 169 VAYVGVLSA 177
+V VL A
Sbjct: 232 FTFVTVLGA 240
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
Y A++ Y + ++ F+ M E+D V W ++I G + E+L LF+++ N
Sbjct: 272 YNALIDMYCKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNR 331
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
+ + T +L+A ++ G K ID+ +V +
Sbjct: 332 LPNHVTFSGVLSACSHTGR-------KKEIDRRQVSQE 362
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + K ++S TA+++ + V AR FD + +RD V W MIDGY++ E
Sbjct: 185 LFDEIPEKSLVSSTAMITCFAKHGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHGLANEG 244
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+++ + E T++++L+A +GALE G W+ +YI N ++ + G+ALIDM
Sbjct: 245 LVLFRQMLKDRVRPSEVTVLAVLSACGQIGALESGRWVHSYIQNNGIEINAHVGSALIDM 304
Query: 127 YCKC-----------TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +K+ W +M+ G A G AL +F++M +P ++ +
Sbjct: 305 YSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQPTDITF 364
Query: 172 VGVLSARTH 180
+GVLSA H
Sbjct: 365 IGVLSACGH 373
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103
+ D + T ++D Y R F A LF EI +++ +++T A G +
Sbjct: 160 DSDLYVRTCLVDVYARGGDFVSARNLFDEIPEKSLVSS----TAMITCFAKHGMV----- 210
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
K +F G D+ C W MI G G ++ L +F QML+
Sbjct: 211 --------KEARVLFDGLEDRDLVC-------WNVMIDGYVQHGLANEGLVLFRQMLKDR 255
Query: 164 IKPDEVAYVGVLSA 177
++P EV + VLSA
Sbjct: 256 VRPSEVTVLAVLSA 269
Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ AR F+++ +D V+W +M+ GY ++AL LF E+
Sbjct: 299 SALIDMYSKCGNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQ 358
Query: 80 GDEFTIVSILTARANLG 96
+ T + +L+A + G
Sbjct: 359 PTDITFIGVLSACGHAG 375
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++ GY + ++IA + F+ MP R+ V W M+ Y+R+ + E
Sbjct: 128 DLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDE 187
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALI 124
L +F ++ M +E T+VS+LTA A+LG L+ G+WI +YI N+V + D+ AL+
Sbjct: 188 CLRMFDKMM-GETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALL 246
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC +W +MI+G + G DKAL+MF M + P++
Sbjct: 247 TMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDA 306
Query: 170 AYVGVLSARTHN 181
++ VLSA H+
Sbjct: 307 TFICVLSACAHS 318
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV+ TA+++ Y +D+AR FD+M R V W +MI GY + +AL +F ++
Sbjct: 237 PDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM 296
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEW 103
+ M ++ T + +L+A A+ G + G W
Sbjct: 297 EKRGPMPNDATFICVLSACAHSGMILEGWW 326
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 34/205 (16%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MGF L+IF +++ Y ++ AR+ FD+MPERD V W T++DGY++
Sbjct: 144 MGFCLDIFVP---------NSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKA 194
Query: 61 NRFREALTLFQEIQTSNIMG----------DEFTIVSILTARANLGALELGEWIKTYIDK 110
A LF+++ N++ D+ T++SIL+A A G L LG+ + I++
Sbjct: 195 GEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIER 254
Query: 111 NKVKNDIFAGNALIDMYCKC------------TVK---FTWTTMIVGLAISGNGDKALDM 155
+ K NALIDMY KC V+ +W +I GLA+ G+G+KAL +
Sbjct: 255 TRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQL 314
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
FS+M PD+V +VGVL A TH
Sbjct: 315 FSRMKGEGFVPDKVTFVGVLCACTH 339
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
Q+ +A F+Q+ + D +L+ T+I ++R + A ++F E+Q S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A + + + E I ++K DIF N+LID Y K +
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVS 183
Query: 136 WTTMIVGLAISGNGDKALDMFSQM----------LRASIKPDEVAYVGVLSA 177
W T++ G +G + A ++F +M + A +K D+ + +LSA
Sbjct: 184 WNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSA 235
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY +R ++ A++ FD++P +D V W MI GY ++E
Sbjct: 144 KVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 203
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+++ +N+ DE T+V++++A A G++ELG + +ID + +++ NALID
Sbjct: 204 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALID 263
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 264 LYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 323
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 324 MLSILPACAH 333
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +V+ A F+ + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 260 ALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+++G WI YI+K V N +LIDMY KC
Sbjct: 320 NDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQ 379
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I PD++ +VG+LSA +H+
Sbjct: 380 VFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 437
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD M R W MI G+ + A LF +++ + I
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T V +L+A ++ G L+LG I + ++ K+ + +ID+ C +
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 481
Query: 139 MIVGLAISGNG 149
MI + + +G
Sbjct: 482 MIRTMPMEPDG 492
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 18/181 (9%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+IS TA+ Y QV +AR FDQM + ++W MI GY + EA+ LFQE+ +
Sbjct: 308 LISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMIS 364
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF 134
NI D T+ S + A A +G+L+L +W+ YI+K + +ND+F ALIDM+ KC +V
Sbjct: 365 KNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDL 424
Query: 135 T--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ MIVG + G G A+D+F M +A + P++V +VG+L+A H
Sbjct: 425 AREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNH 484
Query: 181 N 181
+
Sbjct: 485 S 485
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T V+ N ++ AR+ FD+ PE LW +I GY N F +A+ ++ +Q S +
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVK 133
D FT+ +L A + + LE+G+ + I + ++D+F N L+ +Y KC +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226
Query: 134 F---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F +WT+MI G +G +AL +F QM + ++KPD +A V VL A T
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYT 281
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF DV +V+ Y +V+ AR F+ + +R+ V WT+MI GY + E
Sbjct: 194 QIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F +++ N+ D +VS+L A ++ LE G+ I + K ++ + +L
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTA 313
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC W MI G A +G ++A+ +F +M+ +I+ D +
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSI 372
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T DV TA++ + VD+AR+ FD+ ++D V+W+ MI GY R ++A+ L
Sbjct: 400 TEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDL 459
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELG 101
F ++ + + ++ T V +LTA + G +E G
Sbjct: 460 FYAMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 18/196 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +FG + DV++ + + +VD AR FD MP R W+ M+ Y R RF
Sbjct: 185 ALALFGQCQVFDVVACNSAIVALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARF 244
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+A+ LF +Q + + +VS+L A+LGALE G W+ YIDK V + AL
Sbjct: 245 HDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIAL 304
Query: 124 IDMYCKCT-----------------VKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+DMYCKC K +W M++GLA G +AL +FS++ ++
Sbjct: 305 VDMYCKCGSIHKARQVFDTSRSQGLAKLSSWNAMMLGLAAHGQCQEALALFSELESYGLR 364
Query: 166 PDEVAYVGVLSARTHN 181
PD V ++ +L A H+
Sbjct: 365 PDNVTFIAMLMAYGHS 380
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 113/195 (57%), Gaps = 23/195 (11%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF ++F + + DV+S+ +++SG ++ V+ +Q FD+M +R V W +IDGY++
Sbjct: 177 IGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKA 236
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
EA LF +++ FT+VS+LTA + LGALE GEW++ +I+KN + + G
Sbjct: 237 GLLMEARELFDQMR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLG 288
Query: 121 NALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++M+ KC +++ W ++I LA G+G +A +FS MLR++
Sbjct: 289 TALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTL 348
Query: 166 PDEVAYVGVLSARTH 180
D + ++G+LS H
Sbjct: 349 LDGIIFLGLLSVCRH 363
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
G +KN ++ S ++ A+ F+ + + MI GY + + AL
Sbjct: 51 LGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENAL 110
Query: 68 TLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+LF + +N ++ T +L A + + A+E G+ + + K+ + D+F N+LI M
Sbjct: 111 SLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISM 170
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
Y C + +W +MI GL G ++ MF +M + S+
Sbjct: 171 YSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSL 223
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 15/192 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
++F M ++V+S++ +V GY +++AR FD+MP ++ V WT ++ G+
Sbjct: 237 AFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLA 296
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
REA++LF +++ + + D T++SIL A A G L LGE I I N K NAL
Sbjct: 297 REAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNAL 356
Query: 124 IDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DMY KC +K +W M+ GLA+ G+G KAL++F +M P++
Sbjct: 357 VDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNK 416
Query: 169 VAYVGVLSARTH 180
V +GVL A TH
Sbjct: 417 VTMIGVLCACTH 428
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+S+ +++SG + AR+ FD+MPE+D + W TM+DGY++V + +A LF E+
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
N++ ++ A G +E+ + DK VKN +
Sbjct: 245 PERNVVSWSTMVLGYCKA----GDMEMA---RMLFDKMPVKNLV---------------- 281
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT ++ G A G +A+ +F QM +A +K D + +L+A
Sbjct: 282 -SWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I + + D+ ++S + Q+ +A F+Q+ + L+ TMI + ++ +
Sbjct: 42 QILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQ 101
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A F +Q D FT +L L + E + I+K +D+F N+LID
Sbjct: 102 AFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLID 161
Query: 126 MYCKCTV------------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
Y KC +W +MI GLA G ++A +F +M
Sbjct: 162 SYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEM 213
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 1 MGFTLEIFGTMKNKDVISYT----AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
+G +I ++KN + T A+V Y +++IA F+ + +D V W M+ G
Sbjct: 331 LGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQG 390
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
+AL LF+ ++ ++ T++ +L A + G ++ G
Sbjct: 391 LAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDG 435
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D + + +++ Y ++ AR FD+M ERD V WTTMI YL+ R E LF+
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ SNIM ++FT +L A A+L A +LG+ I Y+ + + A +AL+ MY KC
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGD 402
Query: 131 -------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F+WT+++VG A G DKAL F +L++ KPD +A++GVLSA
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSA 462
Query: 178 RTH 180
H
Sbjct: 463 CAH 465
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++D+ S+ ++SGY+ + AR FD+MP RD WT +I G ++ NR E
Sbjct: 174 KVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEE 233
Query: 66 ALTLFQEIQTSNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL L++ +Q + ++ TI S L A A + +L +G+ I +I + + +D +L+
Sbjct: 234 ALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLL 293
Query: 125 DMYCKC----TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC ++ +WTTMI +G ++ +F ++ ++I P++
Sbjct: 294 DMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDF 353
Query: 170 AYVGVLSA 177
+ GVL+A
Sbjct: 354 TFAGVLNA 361
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y ++ A+ F+ +P+ D WT+++ GY + + +AL F+ + S
Sbjct: 391 SALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTK 450
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
D + +L+A A+ G ++ G E+ + +K+ + I +ID+ +
Sbjct: 451 PDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAES 510
Query: 131 --------TVKFTWTTMIVGLAISGN 148
K+ W ++ G I GN
Sbjct: 511 IINEMPIKPDKYIWAALLGGCRIHGN 536
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 112/189 (59%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M K+V+S+ +++G+ R +++ AR F++MP R+ V WT +IDGY R EA+
Sbjct: 152 FDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAV 211
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L + + I E T+++++ A +++G + +GE + Y +KN + DI GN+LID+Y
Sbjct: 212 ALLRRMMAEGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLY 271
Query: 128 CK-----CTVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
K ++K +WT++I G A+ G +A+++F++M R+ I+P+ V +
Sbjct: 272 AKIGSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTF 331
Query: 172 VGVLSARTH 180
+ VL+A +H
Sbjct: 332 LSVLNACSH 340
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EW 103
R+ V WT++I G+ EA+ LF E++ S I + T +S+L A ++ G +E G E+
Sbjct: 291 RNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEF 350
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
K+ + + + +I +IDM + +I GL + N
Sbjct: 351 FKSMVYEYNINPEIKHFGCIIDMLGRAGRLCEAEQVIGGLPMEVN 395
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 15/192 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L++F K V+++TA+++GY+ ++ +A + F++MPE++ V W MI GY+ +R
Sbjct: 119 ALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRA 178
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+ + LF+ + I + T+ S L + L AL+LG + + K+ + +D AG +L
Sbjct: 179 EDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSL 238
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I MYCKC V TW MI G A G G KAL +F +M+ +KPD
Sbjct: 239 ISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDW 298
Query: 169 VAYVGVLSARTH 180
+ +V VL A H
Sbjct: 299 ITFVAVLMACNH 310
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 24/160 (15%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M KD S+ +++G+ +Q+D AR F MP ++ V W MI GY+ AL
Sbjct: 61 FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSAL 120
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF++ +++ +++T LG + L E + +K KN +
Sbjct: 121 KLFEKAPFKSVVA----WTAMITGYMKLGRIGLAERL---FEKMPEKNLV---------- 163
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
TW MI G + + + +F M+ I+P+
Sbjct: 164 -------TWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPN 196
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + T+++S Y ++ + F Q+P RD V W MI GY + ++AL LF E+
Sbjct: 231 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ D T V++L A + G +LG
Sbjct: 291 EKGMKPDWITFVAVLMACNHAGFTDLG 317
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 24/202 (11%)
Query: 1 MGFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGY 57
MG LE +F M +DV+S+ ++ GY N ++ + FD MPER+ W +I GY
Sbjct: 103 MGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 162
Query: 58 LRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTY---IDKNKV 113
+ R E L F+ + +++ ++ T+ +L+A A LGA + G+W+ Y + NKV
Sbjct: 163 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV 222
Query: 114 KNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
D+ NALIDMY KC +W TMI GLA G+G +AL++F +
Sbjct: 223 --DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE 280
Query: 159 MLRASIKPDEVAYVGVLSARTH 180
M + I PD+V +VGVL A H
Sbjct: 281 MKNSGISPDKVTFVGVLCACKH 302
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+ +T++++GY+ + + AR+ FD PERD VLW TMI GY+ + E
Sbjct: 49 KVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLE 108
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +LF ++ ++M + ++L AN+G +E E +V +D+ N
Sbjct: 109 ARSLFDQMPCRDVM----SWNTVLEGYANIGDMEACE---------RVFDDMPERNV--- 152
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G A +G + L F +M+ S+ P++ VLSA
Sbjct: 153 --------FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSA 197
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y ++IA + F + RD + W TMI+G EAL LF E++
Sbjct: 223 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMK 282
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S I D+ T V +L A ++G +E G
Sbjct: 283 NSGISPDKVTFVGVLCACKHMGLVEDG 309
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 15/185 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++ D + TA+V+ V AR+ F+ MPERD + W MI GY +V RE
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F +Q + + ++S+L+A LGAL+ G W +YI++NK+K + L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +TW++ + GLA++G G+K L++FS M + + P+ V
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 171 YVGVL 175
+V VL
Sbjct: 344 FVSVL 348
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 18/193 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFRE 65
+F TM + +V+S+T++VSGY VD A + F+ MP +++ V W MI +++ NRFRE
Sbjct: 157 VFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFRE 216
Query: 66 ALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A LF+ ++ M D F ++L+A +GALE G WI Y++K + D +I
Sbjct: 217 AFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTII 276
Query: 125 DMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDE 168
DMYCKC VK +W MI G A+ G G+ A+ +F +M A + PD
Sbjct: 277 DMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDS 336
Query: 169 VAYVGVLSARTHN 181
+ +V VL+A H+
Sbjct: 337 ITFVNVLTACAHS 349
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + KD IS+ +++GY ++IA F+ MP RD V W ++I GY +
Sbjct: 287 IFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMV 346
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ + NI D TI+++++A A +GAL G WI ++ + ++K D F G+A IDM
Sbjct: 347 QRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDM 406
Query: 127 YCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC ++K WTTMI G A G G KAL +F +M + + P++V +
Sbjct: 407 YWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQVTF 465
Query: 172 VGVLSARTHN 181
V VL+A +H+
Sbjct: 466 VAVLTACSHS 475
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y+ E++ +A Q F QM D V + MI GY + EAL E+ + DEFT+
Sbjct: 172 YLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTM 231
Query: 86 VSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNALIDMYCKCTV----------- 132
+ +L LG +LG+ + +I++ + +++ NAL+DMY KC
Sbjct: 232 LGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVI 291
Query: 133 ----KFTWTTMIVGLAISGNGDKALDMFSQM 159
+W TMI G A GN + A + F M
Sbjct: 292 VRKDTISWNTMIAGYAKVGNLEIAHNFFEDM 322
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 110/192 (57%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D+ ++ ++++GY ++ A + F MP R V WTTMI GY + + +
Sbjct: 66 QVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTK 125
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL +F +++ + +E TI S+ +A A LGALE+GE I++Y N + +++ N L+
Sbjct: 126 ALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLL 185
Query: 125 DMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+MY +C +W +M++GLA+ G ++AL ++ QML I+PD+
Sbjct: 186 EMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDD 245
Query: 169 VAYVGVLSARTH 180
V +VG++ A TH
Sbjct: 246 VTFVGLILACTH 257
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF------ 134
+E T + A A+ +L G+ I T+ K+ D++A AL+DMY K V
Sbjct: 9 NELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVF 68
Query: 135 ---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TW ++I G + SG+ + AL++F M S+ V++ ++S + N
Sbjct: 69 DEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSV----VSWTTMISGYSQN 120
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREAL 67
G MKN V + ++ Y ++D AR F+++ +R + W +M+ G R EAL
Sbjct: 173 GLMKNLYVSN--TLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEAL 230
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ ++ I D+ T V ++ A + G + G + ++ N F+ ++ Y
Sbjct: 231 QLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETN------FSIVPKLEHY 284
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
C V L +G +A D+ M +KPD V + +L A
Sbjct: 285 -GCMVDL--------LGRAGELQEAYDLVKSM---PMKPDSVIWGTLLGA 322
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 108/191 (56%), Gaps = 18/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ +++ Y +++ AR+ FD+ P +D V W M+ GY+ N +E
Sbjct: 194 KLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQE 253
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALI 124
AL LF E+ DE T++S+L+A A+LG + GE + I + NK K GNAL+
Sbjct: 254 ALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALV 311
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W ++I GLA G+ +++L +F +M R + PDE+
Sbjct: 312 DMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEI 371
Query: 170 AYVGVLSARTH 180
+VGVL+A +H
Sbjct: 372 TFVGVLAACSH 382
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-E 102
++D V W ++I G E+L LF+E+Q + + DE T V +L A ++ G ++ G
Sbjct: 332 DKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNR 391
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
+ +K K++ +I +C C V LA +G +A D + M
Sbjct: 392 YFYLMKNKYKIEPNI--------RHCGCVVDM--------LARAGLLKEAFDFIASM--- 432
Query: 163 SIKPDEVAYVGVLSA 177
I+P+ + + +L A
Sbjct: 433 KIEPNAIVWRSLLGA 447
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F Q+P+ D +W T I G + + A+ L+ ++ ++ D FT +L A
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTM 139
L + G + + + +++ N L+ + KC +K W+ +
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 140 IVGLAISGNGDKALDMFSQMLR 161
I G A G+ A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 108/202 (53%), Gaps = 24/202 (11%)
Query: 1 MGFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGY 57
MG LE +F M +DV+S+ ++ GY N ++ + FD MPER+ W +I GY
Sbjct: 50 MGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGY 109
Query: 58 LRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTY---IDKNKV 113
+ R E L F+ + +++ ++ T+ +L+A A LGA + G+W+ Y + NKV
Sbjct: 110 AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV 169
Query: 114 KNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
D+ NALIDMY KC +W TMI GLA G+G +AL++F +
Sbjct: 170 --DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE 227
Query: 159 MLRASIKPDEVAYVGVLSARTH 180
M + I PD+V +VGVL A H
Sbjct: 228 MKNSGISPDKVTFVGVLCACKH 249
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+V+ +T++++GY+ + + AR+ FD PERD VLW TMI GY+ + EA +LF
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ ++M + ++L AN+G +E E +V +D+ N
Sbjct: 61 DQMPCRDVM----SWNTVLEGYANIGDMEACE---------RVFDDMPERNV-------- 99
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G A +G + L F +M+ S+ P++ VLSA
Sbjct: 100 ---FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSA 144
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y ++IA + F + RD + W TMI+G EAL LF E++
Sbjct: 170 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMK 229
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S I D+ T V +L A ++G +E G
Sbjct: 230 NSGISPDKVTFVGVLCACKHMGLVEDG 256
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G F MK KD+ S+ +V G++ ++ A+ FDQMP+RD V W +++ GY +
Sbjct: 286 GLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKG 345
Query: 62 -RFREALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R LF E+ + D T+VS+++ AN G L G W+ + + ++K D F
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+ALIDMYCKC + WT+MI GLA GNG +AL +F +M +
Sbjct: 406 SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465
Query: 165 KPDEVAYVGVLSARTHN 181
P+ V + VL+A +H+
Sbjct: 466 TPNNVTLLAVLTACSHS 482
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+ ++V Y+ +A + F +MP D + MI GY + EAL L+ ++ + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNALIDMYCKCTVK--- 133
DE+T++S+L +L + LG+ + +I++ +++ NAL+DMY KC
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 134 ------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+W TM+VG G+ + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D +A++ Y ++ A F E+D LWT+MI G ++AL LF +Q
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALIDMYCKCTVK 133
+ + T++++LTA ++ G +E G + ++ DK + +L+D+ C+
Sbjct: 462 EEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCR---- 517
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G ++A D+ + + ++P + + +LSA
Sbjct: 518 ------------AGRVEEAKDIVQK--KMPMRPSQSMWGSILSA 547
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + +F +D IS+ +V+G+ N +D+A + F + P RD + W ++ GY R
Sbjct: 165 MNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARY 224
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F + LF ++ S+++ D+ T V++++A A G L + ++ K D F
Sbjct: 225 EEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLA 284
Query: 121 NALIDMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL+DMYCKC ++K WT MI GLA G+GD ALD+F +M +
Sbjct: 285 SALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTE 344
Query: 166 PDEVAYVGVLSARTH 180
P+ V V VLSA +H
Sbjct: 345 PNGVTLVAVLSACSH 359
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y++ V+ A F P D V M+ GY++ +AL F+ + + I
Sbjct: 51 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 110
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKCTVKFT--- 135
D++T V++L L LG + + + D + NAL+DMY KC T
Sbjct: 111 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 170
Query: 136 ------------WTTMIVGLAISGNGDKA------------------------------- 152
W TM+ G A +G D A
Sbjct: 171 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 230
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
+ +F ML +S+ PD+V V ++SA
Sbjct: 231 MILFHDMLASSVIPDKVTAVTLISA 255
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + +F +D IS+ +V+G+ N +D+A + F + P RD + W ++ GY R
Sbjct: 282 MNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARY 341
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F + LF ++ S+++ D+ T V++++A A G L + ++ K D F
Sbjct: 342 EEFSATMILFHDMLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLA 401
Query: 121 NALIDMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL+DMYCKC ++K WT MI GLA G+GD ALD+F +M +
Sbjct: 402 SALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTE 461
Query: 166 PDEVAYVGVLSARTH 180
P+ V V VLSA +H
Sbjct: 462 PNGVTLVAVLSACSH 476
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y++ V+ A F P D V M+ GY++ +AL F+ + + I
Sbjct: 168 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 227
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKCTVKFT--- 135
D++T V++L L LG + + + D + NAL+DMY KC T
Sbjct: 228 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 287
Query: 136 ------------WTTMIVGLAISGNGDKA------------------------------- 152
W TM+ G A +G D A
Sbjct: 288 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 347
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
+ +F ML +S+ PD+V V ++SA
Sbjct: 348 MILFHDMLASSVIPDKVTAVTLISA 372
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D S ++ GY V AR+ FD+MP +D V T MI+GY + R + A
Sbjct: 202 VFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVA 261
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF++++ + I D T+V +++A + +G+ EL W+ Y+D+ K++ + AL+DM
Sbjct: 262 LALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLTALVDM 321
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ KC + +T +I GLA G+ + AL +F +M IKP + +
Sbjct: 322 HAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHPITF 381
Query: 172 VGVLSARTH 180
VGVL+A +H
Sbjct: 382 VGVLTACSH 390
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 61/164 (37%), Gaps = 24/164 (14%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D +S+ +++ + V A F MP R V W M+ Y+ A +F E+
Sbjct: 147 PDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVSAGDLAAACRVFDEM 206
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
T + IV A EL DK K D+ +
Sbjct: 207 PTRDTASSMVLIVGYCKCGLVQNAREL-------FDKMPTK----------DLVAR---- 245
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T MI G A +G AL +F + A I+PD VGV+SA
Sbjct: 246 ---TAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISA 286
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 108/183 (59%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+++V +++ Y ++D AR+ FD++ E V + MI GY R +R EAL+LF+E
Sbjct: 153 SENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRE 212
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+Q N+ + T++S+L++ A LGAL+LG+W+ Y+ KN + ALIDMY KC
Sbjct: 213 LQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGS 272
Query: 131 -----------TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
V+ T W+ MI+ AI G+G KA+ +F +M +A +PDE+ ++G+L A
Sbjct: 273 LDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYA 332
Query: 178 RTH 180
+H
Sbjct: 333 CSH 335
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A FDQ+P+ D VL+ TM GY R + A TLF +I S + D++T S+L A A+
Sbjct: 74 AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
ALE G + K + +++ LI+MY C T+ M
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A ++AL +F ++ ++KP +V + VLS+
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSS 231
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+ V TA++ Y +D A F+ M RD W+ MI Y +A++LF+E
Sbjct: 254 NRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKE 313
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + DE T + +L A ++ G +E G E+ DK V I ++D+ +
Sbjct: 314 MRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAG 373
Query: 132 VKFTWTTMIVGLAI 145
IVGL I
Sbjct: 374 RLEEAYEFIVGLPI 387
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 114/190 (60%), Gaps = 20/190 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++V+S+T ++ GY + AR F++ PERD V W+ +I GY++ + E
Sbjct: 241 KMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNE 300
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN---A 122
A+ +F E+ + N+ DEF +VS+++A + +G+LEL +W+ Y+ K+ + D+ + A
Sbjct: 301 AVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI--DVHRAHVIAA 358
Query: 123 LIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDM KC T F ++ +M+ GL+I G G +A+ +FS+ML + PD
Sbjct: 359 LIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPD 418
Query: 168 EVAYVGVLSA 177
+VA+ +L+A
Sbjct: 419 DVAFTVILTA 428
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+S+TA+++GY + + AR+ FD+MPE++ V W +I GY++ R
Sbjct: 179 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRS 238
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F E+ N++ + +++ A G + ++ + + D+ A
Sbjct: 239 ARKMFDEMPHRNVV----SFTTMIDGYAKSGDMASAR----FVFEEAPERDVVA------ 284
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ +I G +G ++A+ +F +M ++KPDE V ++SA
Sbjct: 285 ----------WSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSA 326
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + VLW T I GY ++LF ++ S+ + D+FT S++ A + + +
Sbjct: 80 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF---------------TWTTMIVGL 143
+ G + V D+F +LID+Y KC +WT MI G
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 144 AISGNGDKALDMFSQM 159
A + +A +F +M
Sbjct: 200 ASFSDLVEARKLFDEM 215
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D A + F++MP+RD + + +M+ G +A++LF + + D+ ILT
Sbjct: 368 SMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 427
Query: 91 ARANLGALELG 101
A + G ++ G
Sbjct: 428 ACSRAGLVDEG 438
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ M ERD V W +MI+G+ R EALTLF+E+ + D FT+VS+L+A A
Sbjct: 172 AYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAE 231
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
LGALELG + Y+ K + + N+L+D+Y KC +WT++
Sbjct: 232 LGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSL 291
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
IVGLA++G G++AL++F +M + P E+ +VGVL A +H
Sbjct: 292 IVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
W T+I GY + A ++++ S + D T +L A + + GE I +
Sbjct: 86 WNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 145
Query: 110 KNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALD 154
+N ++ +F N+L+ +Y C W +MI G A++G ++AL
Sbjct: 146 RNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALT 205
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +M ++PD V +LSA
Sbjct: 206 LFREMSVEGVEPDGFTVVSLLSA 228
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARA 93
A++ F +M ER+ V WT++I G L VN F EAL LF+E++ ++ E T V +L A +
Sbjct: 273 AQRVFSEMSERNAVSWTSLIVG-LAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACS 331
Query: 94 NLGALELG 101
+ G L+ G
Sbjct: 332 HCGMLDEG 339
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++ D S+ +++SGY+ +V+ A+ FD MP++D V W+ MI G + N+ EA
Sbjct: 326 LFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEA 385
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F ++ I D+ T+VS+++A +NL ALE G+ + YI K + I G +LIDM
Sbjct: 386 LNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDM 445
Query: 127 YCKCTV-------------KFT--WTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVA 170
Y KC K T W +IVGLA++G ++LDMFS+M + P+E+
Sbjct: 446 YMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEIT 505
Query: 171 YVGVLSARTH 180
+ GVLSA H
Sbjct: 506 FTGVLSACRH 515
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 46/219 (21%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+++F M + + +A+V+ + R V+ AR FD RD WT M+ + R + F
Sbjct: 192 VKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFM 251
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL +F +++ DE +VS++ A A G ++ GE + + + + + N LI
Sbjct: 252 EALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLI 311
Query: 125 DMYCKCT---------------VKFTWTTMIVGLAISG---------------------- 147
MY C F+W +MI G +G
Sbjct: 312 HMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSA 371
Query: 148 ---------NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL++F M IKPD+V V V+SA
Sbjct: 372 MIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISA 410
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D + FD MP ++ V W MI GY +R+ EA
Sbjct: 266 VFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEA 325
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 326 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 385
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 386 MFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 445
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 446 FIAALAACAH 455
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 172 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 231
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I + A G +E + +D + D+ + A++
Sbjct: 232 ARAVFDRMPSRNAVSWNLMI----SGYAMSGDVEAARSVFDRMD----QKDVVSWTAMVS 283
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 284 AYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 343
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 344 TLVSVVSA 351
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 105/181 (58%), Gaps = 15/181 (8%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+I A++ Y+ E++D+AR+ FD++ RD + WT MI G ++ +AL +F E+Q
Sbjct: 246 LIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQK 305
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135
S + D+ + ++L+A +LGALE G W+ YI++ ++ D+ G +L+DMY KC T
Sbjct: 306 SRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLET 365
Query: 136 ---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W +I G A+ G+G +AL+ F +M+ + + P+EV+++ VL A H
Sbjct: 366 SLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCH 425
Query: 181 N 181
+
Sbjct: 426 S 426
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+M RD V WT ++ ++R RF EAL L ++ +++ +E T+ +L A
Sbjct: 167 ARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLVACGR 223
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------VK--FTWTTM 139
LGA G+ + + + + + GNA++DMY KC V+ +WT M
Sbjct: 224 LGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIM 283
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
I GL KAL++F++M ++ +KPD+V VLSA T
Sbjct: 284 ISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACT 323
Score = 36.2 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T++V Y ++ + F +MP ++ W +I+G+ REAL F +
Sbjct: 346 DVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMV 405
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
S + +E + + +L A + G ++ G
Sbjct: 406 ASGLAPNEVSFIIVLGACCHSGLVQEG 432
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 17/177 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++ Y+ ++ A F+++ +++ V W MI GY ++ ++EAL LF+ + SNI
Sbjct: 301 GLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDP 360
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKC-------- 130
++ T +SIL A ANLGAL+LG+W+ Y+DKN +KN + +LIDMY KC
Sbjct: 361 NDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKR 420
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW MI G A+ G+ D AL +FS+M PD++ +VGVL+A H
Sbjct: 421 IFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKH 477
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 107/187 (57%), Gaps = 16/187 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +D +S+TA+++GY ++ +D AR+ FD++P RD V W MI GY + R EA
Sbjct: 185 VFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEA 244
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ F+E++ + + + T++S+L+A A G +L+LG W++++I+ + ++I N LID
Sbjct: 245 MAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLID 304
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W MI G +AL +F +M++++I P++V
Sbjct: 305 MYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVT 364
Query: 171 YVGVLSA 177
++ +L A
Sbjct: 365 FLSILPA 371
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
+MKN V +T+++ Y + +A++ FD M + W MI G+ AL L
Sbjct: 394 SMKNT-VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGL 452
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYC 128
F + + + D+ T V +LTA + G L LG + + I KV + +ID++
Sbjct: 453 FSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFG 512
Query: 129 KCTVKFTWTTMIVGLAISGNG 149
+ + T++ + + +G
Sbjct: 513 RAGLFDEAETLVKNMEMKPDG 533
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 104/190 (54%), Gaps = 26/190 (13%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQM-PERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
DV++ A+V Y A +CF M P ++ V W TMI + R +EAL LF+E+
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 74 Q-----TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG---NALID 125
TS+ + D+ T V++L A A LGAL+ G W+ YI + D AG NALID
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYI--VRTGRDAAAGVVGNALID 315
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +T+T+MI GLA+ G G++AL +F M +A ++P+EV
Sbjct: 316 MYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVT 375
Query: 171 YVGVLSARTH 180
++GVLSA H
Sbjct: 376 FLGVLSACCH 385
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA-LELG 101
P D V WT M+ + R+ FREA LF + + + + A L L
Sbjct: 124 PAPDVVSWTAMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAGELVLA 183
Query: 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK----------------FTWTTMIVGLAI 145
+ + + V D+ A NAL+DMY KC TW TMI A
Sbjct: 184 REVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHAR 243
Query: 146 SGNGDKALDMFSQMLR-----ASIKPDEVAYVGVLSA 177
+G +AL++F +ML+ +S PD+ +V VL A
Sbjct: 244 AGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGA 280
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y V+ A + FD M RD +T+MI G R EAL LF +++ + +
Sbjct: 312 ALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRP 371
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
+E T + +L+A + G +E G + D + + G I+ Y C V
Sbjct: 372 NEVTFLGVLSACCHAGNIEDG---LRHFDAMAELHGVTPG---IEHY-GCVVDM------ 418
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A ++ S M I+PD + + +L+A R H
Sbjct: 419 --LGRAGRLDEAEELVSVM---PIRPDAIIWGSLLAACRAHG 455
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M + V + A ++ + ++ A + F +MP RD V W ++I GY ++ R+ +AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVF 276
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+E+Q S + E T+VS+L A A +G LELG+ + YI V D + GNAL+DMY KC
Sbjct: 277 REMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKC 336
Query: 131 --------------TVKFT-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
T T W MIVG ++ G KAL++F M ++PD V ++GVL
Sbjct: 337 GSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAM---RVEPDHVTFLGVL 393
Query: 176 SARTHN 181
A +H
Sbjct: 394 IACSHG 399
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 114/194 (58%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M++++++S+ ++G I +V++A F+QMP R V WT +IDGY R N+ +
Sbjct: 179 QVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIK 238
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNAL 123
ALTLF++ I+ I E T+++I A AN+G +++ + + Y++K D+ NAL
Sbjct: 239 ALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITNAL 298
Query: 124 IDMYCKCTV-----KF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
+D+Y KC +F +WT+ I G A++G G +AL+ F M + ++P
Sbjct: 299 LDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRP 358
Query: 167 DEVAYVGVLSARTH 180
+ V ++GVLSA +H
Sbjct: 359 NHVTFLGVLSACSH 372
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 39 FDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
F ++P+ R+ V WT+ I G+ REAL F+ ++ + + + T + +L+A ++ G
Sbjct: 315 FQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTFLGVLSACSHGG 374
Query: 97 ALELG 101
+E G
Sbjct: 375 LVEEG 379
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M +++ S+ +++GY + AR+ FD MP+RD V W +I GY + + E
Sbjct: 315 ELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE 374
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F E++ + T L+ A++ ALELG+ + + K + F GNAL+
Sbjct: 375 ALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLG 434
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W TMI G A G G +AL +F M +A +KPDE+
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494
Query: 171 YVGVLSARTHN 181
VGVLSA +H+
Sbjct: 495 MVGVLSACSHS 505
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 27/190 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + N ++IS+ ++ GY+ R + ARQ FD+MP RD + W TMI GY +V +A
Sbjct: 192 LFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQA 251
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF E + + D FT ++++ G ++ + Y D+ VKN+I + NA++
Sbjct: 252 KRLFNE----SPIRDVFTWTAMVSGYVQNGMVDEA---RKYFDEMPVKNEI-SYNAMLAG 303
Query: 127 YCK---------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y + C +W TMI G +G +A +F M + D V++
Sbjct: 304 YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMM----PQRDCVSW 359
Query: 172 VGVLSARTHN 181
++S N
Sbjct: 360 AAIISGYAQN 369
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 27/192 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KDV+S+ A++SGY VD AR+ F++MP R+ + W ++ Y+
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHN 183
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R +EA LF E Q++ + ++ R LG + D+ V+ D+ +
Sbjct: 184 GRLKEARRLF-ESQSNWELISWNCLMGGYVKRNMLGD------ARQLFDRMPVR-DVISW 235
Query: 121 NALIDMYCK-------------CTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N +I Y + ++ FTWT M+ G +G D+A F +M +K
Sbjct: 236 NTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM---PVK 292
Query: 166 PDEVAYVGVLSA 177
+E++Y +L+
Sbjct: 293 -NEISYNAMLAG 303
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +M + +SY A++SGY+ + +AR FD+MPERD W M+ GY+R R
Sbjct: 65 ALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRL 124
Query: 64 REALTLFQEIQTSNIM 79
EA LF + +++
Sbjct: 125 GEAHKLFDLMPKKDVV 140
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
K+ D++++ +S ++ D A + F+ MP R V + MI GYLR +F A LF
Sbjct: 42 KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ ++ + + R LGE + L D+ K
Sbjct: 102 KMPERDLFSWNVMLTGYVRNR------RLGE-----------------AHKLFDLMPKKD 138
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
V +W M+ G A +G D+A ++F++M + +++ G+L+A HN
Sbjct: 139 V-VSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHN 183
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y D A F+ + E+D V W TMI GY R R+AL LF+ ++ + +
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T+V +L+A ++ G ++ G
Sbjct: 490 PDEITMVGVLSACSHSGLIDRG 511
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + ++D S+ ++ Y+ + +A++ FD+M ERD V W+T+I GY++V F EA
Sbjct: 335 VFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEA 394
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F ++ S + +E+T+VS L A +NL AL+ G+WI YI ++ +K + +LIDM
Sbjct: 395 LDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDM 454
Query: 127 YCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC VK + W MI G A+ G ++A+++F +M + P++V
Sbjct: 455 YAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVT 514
Query: 171 YVGVLSARTH 180
++ +L+A +H
Sbjct: 515 FIALLNACSH 524
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 48/191 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGY-LRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTAR 92
A + FDQ+P+ D ++ TMI + + + + +++ +F+ I+ S + ++ V A
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWT 137
N + GE + T+ K + ++F NALI M+ K ++W
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWN 348
Query: 138 TMIVGLAISGNGD-------------------------------KALDMFSQMLRASIKP 166
TMI SGN +ALD F +ML++ +KP
Sbjct: 349 TMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKP 408
Query: 167 DEVAYVGVLSA 177
+E V L+A
Sbjct: 409 NEYTMVSALAA 419
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DVIS+T ++ Y + AR FD +P +D V WT M+ GY + +A
Sbjct: 167 VFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDA 226
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALI 124
L +F+ ++ + DE T+V +++A A LGA + WI+ + + V +++ G+ALI
Sbjct: 227 LEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALI 286
Query: 125 DMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V+ F++++MIVG AI G A+ +F ML +KP+ V
Sbjct: 287 DMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHV 346
Query: 170 AYVGVLSARTH 180
+VGVL+A +H
Sbjct: 347 TFVGVLTACSH 357
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
R F Q+ + WT +I Y +AL+ + ++ + FT ++ +A A
Sbjct: 62 PRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAA 121
Query: 95 LGALELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKC----------------------- 130
+ LG + + +D++ NA+IDMY KC
Sbjct: 122 VRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTG 181
Query: 131 ---------------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
VK TWT M+ G A + AL++F ++ ++ D
Sbjct: 182 LIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEID 241
Query: 168 EVAYVGVLSA 177
EV VGV+SA
Sbjct: 242 EVTLVGVISA 251
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 15/175 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI+ Y + ++ A++ F+++ E+D + WT+M+ G + F+EAL LFQ++Q + I
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
DE T+V +L+A A GAL+ G++I IDK ++ D+ AL+DMY KC
Sbjct: 313 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372
Query: 131 ---TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
V+ FTW +I GLA+ G+G+ A+ +F QM + PD+V ++ +L A +H
Sbjct: 373 RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSH 427
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F E+ D+ A++ Y N A FD+ RD V W MI+ +L
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192
Query: 63 FREALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+A L E+ + N+ DE T+VS++ A A LG LE G+++ +Y + + ++ N
Sbjct: 193 SEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNN 252
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
A++DMYCKC +WT+M+ GLA SG +AL +F +M I+
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312
Query: 167 DEVAYVGVLSA 177
DE+ VGVLSA
Sbjct: 313 DEITLVGVLSA 323
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 16 VISYTAIV-SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+IS+ A+ SG +N AR+ F QM D + TMI GY R EA++L+ +
Sbjct: 49 LISFLALSHSGDLN-----YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMV 103
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY------- 127
+ D +T +L A A LGA++LG + KN +D+F NALI Y
Sbjct: 104 ERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFG 163
Query: 128 CKCTV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 177
C C V TW MI G +KA D+ +M + +++PDEV V ++ A
Sbjct: 164 CACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPA 222
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N D++ TA+V Y +D+A Q F +M R+ W +I G +A++LF +
Sbjct: 346 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQ 405
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
++ +M D+ T +++L A ++ G ++ G + +K +++ + ++D+ C+
Sbjct: 406 MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCR 463
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++ ++++V+GY + AR FD++P R+ V W +I GY ++ +
Sbjct: 207 EVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQ 266
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F + + DEFT+ S+L+A A LG+LE G+ + +I++ ++ + F N LID
Sbjct: 267 ALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLID 326
Query: 126 MYCKC-----------TVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC ++++ W TMI LA G D+AL +F QM R+ KP+ +
Sbjct: 327 MYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTIT 386
Query: 171 YVGVLSARTH 180
+ VL A TH
Sbjct: 387 VLAVLGACTH 396
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 21/185 (11%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M +++VISY A+++GY +D A F M +V W T+I G+ EA
Sbjct: 114 FDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEAR 173
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ T M T ++ G +E + D+ +N F ++++ Y
Sbjct: 174 RWFE--ATPPGMRTVVTWTVLVQGYVCAGDMETA---REVFDRMPARN-AFVWSSMVTGY 227
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
K W +I G A G ++AL+ F ML+ +KPDE
Sbjct: 228 FKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMA 287
Query: 173 GVLSA 177
+LSA
Sbjct: 288 SLLSA 292
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD M ++ W TMI + EAL LF +++ S + T++++L A +
Sbjct: 337 ARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTH 396
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G ++ G I +D V+ + L+D+ L +G +A +
Sbjct: 397 GGFVDEGLQIFNKLDAYGVEAGVEHYGCLVDL----------------LGRAGKLKEAYE 440
Query: 155 MFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ + M S +P+EV + +L A R H
Sbjct: 441 IVNNM---SEEPNEVIWGSLLGACRVH 464
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA-LELGEWIKTYI 108
W ++ Y + REA ++ V + A A+ A L LG+ +
Sbjct: 23 WAHLVKEYASQSLVREAALVYARNLPRRTHHQPLLPVLLKAAAASSPAELGLGKSLHAEA 82
Query: 109 DKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKAL 153
K+ D+ G ++ MYCKC ++ ++ G A++G+ D AL
Sbjct: 83 LKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGAL 142
Query: 154 DMFSQM 159
+F M
Sbjct: 143 ALFGGM 148
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S T++VSGY V AR F M ER+ V W +I GY + EA
Sbjct: 310 VFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV------KNDIFAG 120
+ LF ++ +I +T ++L A ANL L+LG T+I K+ +DIF G
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVG 429
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC + +W MIVG A +G G +AL++F +ML + +
Sbjct: 430 NSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGER 489
Query: 166 PDEVAYVGVLSARTH 180
PD V +GVLSA +H
Sbjct: 490 PDHVTMIGVLSACSH 504
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 95/187 (50%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ ++ S+ A++ +D A F MPERD W M+ G+ + +RF E
Sbjct: 75 KVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEE 134
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL ++ + + + +E++ S L+A A L L +G I I K++ D++ G+AL+D
Sbjct: 135 ALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVD 194
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V +W ++I +G KAL++F +M+ I+PDE+
Sbjct: 195 MYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEIT 254
Query: 171 YVGVLSA 177
V SA
Sbjct: 255 LASVASA 261
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 20/183 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y V A++ FD M R+ V W ++I Y + +AL +F +
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKC--- 130
I DE T+ S+ +A A+L A+ G I + K+ K +ND+ GNAL+DMY KC
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304
Query: 131 -TVKFTW-----------TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ + T+M+ G A + + A MFS M+ ++ V++ +++
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGY 360
Query: 179 THN 181
T N
Sbjct: 361 TQN 363
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + ++ D+ +++ Y+ V+ R F++M ERD V W MI GY + EAL
Sbjct: 418 FKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEAL 477
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F+E+ S D T++ +L+A ++ G +E G + Y +++ +
Sbjct: 478 EIFREMLVSGERPDHVTMIGVLSACSHAGLVEEG---RCYFQSMTIEHGLV--------- 525
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +T M+ L +G D+A ++ M ++PD V + +L+A
Sbjct: 526 ---PVKDHYTCMVDLLGRAGCLDEANNLIQTM---PMEPDAVVWGSLLAA 569
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 15/174 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++ Y VD A++ FD++ E V + +I GY R +R EAL+LF+++Q + +
Sbjct: 168 LINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPN 227
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
+ T++S+L++ A LGAL+LG+WI Y+ KN + + ALIDMY KC
Sbjct: 228 DVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFE 287
Query: 131 --TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+V+ T W+ MIV A+ G G + MF +M RA ++PDE+ ++G+L A +H
Sbjct: 288 SMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSH 341
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A Q F+ +P+ D VL+ +M GY R N +A++LF + N++ D++T S+L A
Sbjct: 77 MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKA 136
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTW 136
A + G+ + K + + + LI+MY C ++
Sbjct: 137 CVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSY 196
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+I G A S ++AL +F Q+ +KP++V + VLS+
Sbjct: 197 NAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSS 237
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+K V TA++ Y +D A F+ M RD W+ MI Y + ++ +++F+E
Sbjct: 260 DKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEE 319
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG 101
+ + + DE T + +L A ++ G ++ G
Sbjct: 320 MARAKVQPDEITFLGLLYACSHTGLVDEG 348
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++ ++++V+GY + AR FD++P R+ V W +I GY ++ +
Sbjct: 207 EVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQ 266
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F + + DEFT+ S+L+A A LG+LE G+ + +I++ ++ + F N LID
Sbjct: 267 ALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLID 326
Query: 126 MYCKC-----------TVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC ++++ W TMI LA G D+AL +F QM R+ KP+ +
Sbjct: 327 MYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTIT 386
Query: 171 YVGVLSARTH 180
+ VL A TH
Sbjct: 387 VLAVLGACTH 396
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 21/185 (11%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M +++VISY A+++GY +D A F M +V W T+I G+ EA
Sbjct: 114 FDEMPDRNVISYNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEAR 173
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
F+ T M T ++ G +E + D+ +N F ++++ Y
Sbjct: 174 RWFE--ATPPGMRTVVTWTVLVQGYVCAGDMETA---REVFDRMPARN-AFVWSSMVTGY 227
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
K W +I G A G ++AL+ F ML+ +KPDE
Sbjct: 228 FKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMA 287
Query: 173 GVLSA 177
+LSA
Sbjct: 288 SLLSA 292
Score = 37.0 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD M ++ W TMI + EAL LF +++ S + T++++L A +
Sbjct: 337 ARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVLGACTH 396
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G ++ G I +D V + L+D+ L +G +A +
Sbjct: 397 GGFVDEGLQIFNKLDAYGVGAGVEHYGCLVDL----------------LGRAGKLKEAYE 440
Query: 155 MFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ + M S +P+EV + +L A R H
Sbjct: 441 IVNNM---SEEPNEVIWGSLLGACRVH 464
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++ G ++VI +TA++ Y+ +D AR+ FD+M +RD V W+TMI GY + R E
Sbjct: 275 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 334
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF+ ++ ++ +E T+V +++A A LG+ EL E I Y + ++ + G+ALID
Sbjct: 335 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 394
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY +C TW +MI GLA++G + A+ ++ +M ++P+E+
Sbjct: 395 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 454
Query: 171 YVGVLSARTH 180
+V +L+A TH
Sbjct: 455 FVALLAACTH 464
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + +F M KD I +++GY VD AR+ FD M R W +MI Y
Sbjct: 170 MESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 229
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
FREALTLF + + + TI S+ + A G L+ G+ ++ I ++ ++N +
Sbjct: 230 GEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVH 288
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++MY KC W+TMI G A +G ++L++F +M +
Sbjct: 289 TALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCR 348
Query: 166 PDEVAYVGVLSA 177
P+EV VGV+SA
Sbjct: 349 PNEVTLVGVISA 360
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 63/190 (33%), Positives = 110/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++ G ++VI +TA++ Y+ +D AR+ FD+M +RD V W+TMI GY + R E
Sbjct: 226 DLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLE 285
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF+ ++ ++ +E T+V +++A A LG+ EL E I Y + ++ + G+ALID
Sbjct: 286 SLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALID 345
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY +C TW +MI GLA++G + A+ ++ +M ++P+E+
Sbjct: 346 MYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEIT 405
Query: 171 YVGVLSARTH 180
+V +L+A TH
Sbjct: 406 FVALLAACTH 415
Score = 99.8 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + F M KD I +++GY VD AR+ FD M R W +MI Y
Sbjct: 121 MESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHG 180
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
FREAL LF + + + TI S+ + A G L+ G+ ++ I ++ ++N +
Sbjct: 181 GEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVH 239
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL++MY KC W+TMI G A +G ++L++F +M +
Sbjct: 240 TALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCR 299
Query: 166 PDEVAYVGVLSA 177
P+EV VGV+SA
Sbjct: 300 PNEVTLVGVISA 311
>gi|255560231|ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539702|gb|EEF41284.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 16/179 (8%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ + ++ GY+ + ++R FD MP R V W MI GY + F+EA+ LF ++Q
Sbjct: 93 VVLWNVMIDGYVRLGDLAVSRDLFDNMPYRTVVSWNVMISGYAQNGYFKEAIELFHDMQM 152
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----- 130
++ + T+VS+L A + LGALELG+W+ Y +KN ++ + G+ALIDMY KC
Sbjct: 153 DDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEKNNIEVNDVLGSALIDMYSKCGSIEK 212
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
T F TW+ +I GLA+ G ALD + +M A + P +V Y L +
Sbjct: 213 ATQVFESIHNKMNVVTWSAIIGGLAMHGRAKDALDYYRRMQEAGVTPSDVVYRAKLKGK 271
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ FT S+L A A L+ G+ + Y+ K ++ ND F + L+ MY C V
Sbjct: 10 NRFTFPSVLKACAKTARLQEGKQVHGYVIKLRLDNDEFVASNLVRMYVMCGV 61
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y QV+ A F+ + +D V W T+I GY +N ++EAL LFQE+ S
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 297
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ TIVSIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 298 NDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQ 357
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 358 VFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY + + A++ FD++P +D V W MI GY ++E
Sbjct: 122 KVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKE 181
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+V++L+A A ++ELG + ++ID + +++ NALID
Sbjct: 182 ALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALID 241
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 242 LYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 301
Query: 171 YVGVLSARTH 180
V +L A H
Sbjct: 302 IVSILPACAH 311
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 46/185 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F + E + ++W TM+ GY + AL L+ + + ++ + +T +L + A A
Sbjct: 23 FATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAF 82
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYC-----------------KCTVKFT------ 135
E G+ I ++ K + D++ +LI MY + V +T
Sbjct: 83 EEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGY 142
Query: 136 -----------------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
W MI G A +G+ +AL++F +M++ +++PDE V
Sbjct: 143 ASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMV 202
Query: 173 GVLSA 177
VLSA
Sbjct: 203 TVLSA 207
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D + FD MP ++ V W MI GY +R+ EA
Sbjct: 266 VFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEA 325
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 326 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 385
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 386 MFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 445
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 446 FIAALAACAH 455
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 172 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 231
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I + A G +E + +D + D+ + A++
Sbjct: 232 ARAVFDRMPSRNAVSWNLMI----SGYAMSGDVEAARSVFDRMD----QKDVVSWTAMVS 283
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 284 AYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 343
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 344 TLVSVVSA 351
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 102/179 (56%), Gaps = 33/179 (18%)
Query: 35 ARQCFDQMPERDYV------------------LWTTMIDGYLRVNRFREALTLFQEIQTS 76
AR+ FD+MPERD V WT MIDG +R AL +F+ +Q
Sbjct: 184 ARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE 243
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------ 130
++M +E TIV +L+A + LGAL+LG W+++Y+DK++++ + F G ALI+MY +C
Sbjct: 244 DVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEA 303
Query: 131 -----TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+K T+ +MI+G A+ G +A+++F +++ P V +VGVL+A +H
Sbjct: 304 QRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSH 362
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N + A + F + L+T +IDG + + + + L+ ++ S+++ D + + S
Sbjct: 76 NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTS 135
Query: 88 ILTARANLGALELGEWIKTYI--------------------------DKNKV-----KND 116
+L A AL+ G + + + D +V + D
Sbjct: 136 VLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
Query: 117 IFAGNALIDMYCKCTVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
+ A +I+ Y +K T WT MI GL +G ++AL++F M R + P+EV V V
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255
Query: 175 LSA 177
LSA
Sbjct: 256 LSA 258
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A++ F+QM E++ + + +MI G+ + EA+ LF+ +
Sbjct: 289 ALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTP 348
Query: 81 DEFTIVSILTARANLGALELG 101
T V +L A ++ G ELG
Sbjct: 349 SSVTFVGVLNACSHGGLAELG 369
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F M +D++S++ +V GY +D+AR FD+ P ++ VLWTT+I GY
Sbjct: 237 MDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEK 296
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EA+ L E++ S + D+ +SIL A A G L LG+ + +++ +
Sbjct: 297 GQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVL 356
Query: 121 NALIDMYCKC--------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
N+ IDMY KC T K +W +MI G I G+G+K++++F+ M+R
Sbjct: 357 NSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGF 416
Query: 165 KPDEVAYVGVLSARTH 180
KPD ++G+L A TH
Sbjct: 417 KPDRYTFIGLLCACTH 432
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 90/174 (51%), Gaps = 24/174 (13%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+++F M+ +DV+S+ ++V G + +D A + FD+MPERD V W TM+DG+ +
Sbjct: 178 AMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEM 237
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+A LF+ + +I+ + +++ + G +++ + D+ VKN +
Sbjct: 238 DKAFKLFERMAERDIV----SWSTMVCGYSKNGDMDMA---RMLFDRCPVKNLVL----- 285
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WTT+I G A G +A+++ +M ++ ++ D+ ++ +L+A
Sbjct: 286 ------------WTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAA 327
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ- 71
++D +++ Y + A F+Q+P+ + L+ +I Y +L F
Sbjct: 51 HQDPYIAPKLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGV 110
Query: 72 --EIQTSNIMGDEFTIVSILTA-RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
++ ++ D FT +L + L L + + +++K DIF N+LID YC
Sbjct: 111 LLKMHVDGVLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYC 170
Query: 129 KC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQM 159
+C +K +W +M+ GL +G+ D AL +F +M
Sbjct: 171 RCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEM 216
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD+MP+ V W+ MI GY+R +A+ LF+E+Q + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATD 242
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LGALEL W++ ++++ + + NALID KC +WT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I LA+ G G +A+ +F +M A + PD+VA++GVL+A +H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K V A++ VD A F+ M +R V WT++ID R +EA+ +F+E+
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG----NALIDMYCK 129
+ + + D+ + +LTA ++ G ++ G Y D KV+ I ++DM+ +
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGIEPKIEHYGCMVDMFGR 379
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+G ++A++ M I+P+ V + ++SA R H
Sbjct: 380 ----------------AGMVERAMEFVRTM---PIQPNPVIWRSLVSACRAH 412
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+TA+VS Y +D + FD MP ++ V W MI GY +R+ EA
Sbjct: 145 VFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEA 204
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALID
Sbjct: 205 LRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALID 264
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC TWTTMI G A +G AL +++ M R ++ D+
Sbjct: 265 MFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTV 324
Query: 171 YVGVLSARTH 180
++ L+A H
Sbjct: 325 FIAALAACAH 334
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTT-----------MI 54
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T MI
Sbjct: 71 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGNAVSWNLMI 130
Query: 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114
GY A ++F + +++ + ++++A A +G L+ + D VK
Sbjct: 131 SGYAMSGDVEAARSVFDRMDQKDVV----SWTAMVSAYAKIGDLDT---VNELFDHMPVK 183
Query: 115 NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVG 173
N + +W MI G + D+AL F ML +PDE V
Sbjct: 184 NLV-----------------SWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVS 226
Query: 174 VLSA 177
V+SA
Sbjct: 227 VVSA 230
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD+MP+ V W+ MI GY+R +A+ LF+E+Q + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LGALEL W++ ++++ + + NALID KC +WT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I LA+ G G +A+ +F +M A + PD+VA++GVL+A +H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K V A++ VD A F+ M +R V WT++ID R +EA+ +F+E+
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG----NALIDMYCK 129
+ + + D+ + +LTA ++ G ++ G Y D KV+ I ++DM+ +
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGIEPKIEHYGCMVDMFGR 379
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+G ++A++ M I+P+ V + ++SA R H
Sbjct: 380 ----------------AGMVERAMEFVRTM---PIQPNPVIWRSLVSACRAH 412
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D + T+++ Y NR D AR+ FD+MP RD V W +I Y R R ++AL LF+E+
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227
Query: 74 --QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CK 129
+ S D+ T + +L A ++LGAL+ GE + Y +++ ++ N+LI MY C
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287
Query: 130 CTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
C K TWT MI GLA +G G+ A+ +F +M+R+ + PDE + GVLS
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347
Query: 177 ARTHN 181
A +H+
Sbjct: 348 ACSHS 352
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIM 79
++++ Y+ VD A + F P++ V WT MI G L N F +A+++F+E+ S++
Sbjct: 278 SLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISG-LAANGFGNDAISVFEEMIRSDVA 336
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T +L+A ++ G ++ G
Sbjct: 337 PDEQTFTGVLSACSHSGLVDEG 358
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 14/189 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F T++ KD +S+ +++SG +D AR F++MP+RD V WT +I Y++
Sbjct: 611 HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEV 670
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF ++ I ++ T+ S+L+A NLGA++LGE I K +F GN+LI
Sbjct: 671 ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLIT 730
Query: 126 MYCKCTVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
MY KC + TW ++VG A +G G +A+ +F QM I PD++++
Sbjct: 731 MYFKCGYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSF 790
Query: 172 VGVLSARTH 180
+GVL A +H
Sbjct: 791 LGVLCACSH 799
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 46/217 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + N +V+++ AI++GY + A+ F +MP ++ W MI G+++ REA
Sbjct: 480 IFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREA 539
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L L E+ S + + + S L+A AN+G +E+G I + K + + + N LI M
Sbjct: 540 LELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISM 599
Query: 127 YCKC-----------------TVKF-----------------------------TWTTMI 140
Y KC TV + +WT +I
Sbjct: 600 YAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAII 659
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G+G+ ALD+F ML IKP+++ +LSA
Sbjct: 660 SAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 696
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V S+ ++V+GY + ++ AR+ FDQMPER+ V W MI GY+ ++ + E
Sbjct: 285 KLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWE 344
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F ++ + D+ V +L+A L LEL ++ K + D+ G+A+++
Sbjct: 345 AWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN 404
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
Y + +++WTTMI A G D A+ ++ ++ ++
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 5 LEIFGTMK--------NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
LE+ G+++ DV+ +AI++ Y +D+A F+ MPER+ WTTMI
Sbjct: 377 LELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAA 436
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVK- 114
+ + R +A+ L++ + + T +++TA A +G ++ I ++ N V
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAW 492
Query: 115 NDIFAG---NALI----DMYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N I AG N ++ D++ K VK +W MI G + +AL++ ++ R+
Sbjct: 493 NAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV 552
Query: 166 PDEVAYVGVLSA 177
P + ++ LSA
Sbjct: 553 PSDSSFTSALSA 564
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+ ++++GY +VD AR FD ++ WT ++ GY + R EA
Sbjct: 193 VFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEA 252
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+F+ + N++ + ++++ G L+ + D+ KN + + N+++
Sbjct: 253 REVFESMTERNVV----SWNAMISGYVQNGDLKNA---RKLFDEMPEKN-VASWNSVVTG 304
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC C +W MI G + +A D+F +M R +PD+ +
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364
Query: 172 VGVLSART 179
V VLSA T
Sbjct: 365 VVVLSAIT 372
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F++MPE D + W ++ G + +EA+ +F++++ I+ D+ + + +L A ++ G +
Sbjct: 744 FEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLV 803
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQ 158
+ G W N++ Y + + +T M+ L +G +A +
Sbjct: 804 DEG-WAHF--------------NSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIEN 848
Query: 159 MLRASIKPDEVAYVGVLSA-RTH 180
M +KPD V + +L A R H
Sbjct: 849 M---PVKPDSVIWEALLGACRIH 868
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 17/185 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D + T+++ Y NR D AR+ FD+MP RD V W +I Y R R ++AL LF+E+
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213
Query: 74 --QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CK 129
+ S D+ T + +L A ++LGAL+ GE + Y +++ ++ N+LI MY C
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273
Query: 130 CTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
C K TWT MI GLA +G G+ A+ +F +M+R+ + PDE + GVLS
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333
Query: 177 ARTHN 181
A +H+
Sbjct: 334 ACSHS 338
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIM 79
++++ Y+ VD A + F P++ V WT MI G L N F +A+++F+E+ S++
Sbjct: 264 SLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISG-LAANGFGNDAISVFEEMIRSDVA 322
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T +L+A ++ G ++ G
Sbjct: 323 PDEQTFTGVLSACSHSGLVDEG 344
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G E+F KD++S+ +++ Y + AR+ FD P+RD V W MI GY+R
Sbjct: 197 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 256
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIF 118
++A+ LF+++Q D T++S+L+A A+ G L+ G + ++ +++
Sbjct: 257 GSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTA 316
Query: 119 AGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC TW ++I GLA+ G+ +++ +F +ML+ +
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPDE+ +V VL+A +H
Sbjct: 377 VKPDEITFVAVLAACSHG 394
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-------IMGDEFTIVS 87
AR FD++P D ++ T+I G + R+A++++ + + + D+ T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------KCTVKF------- 134
+L A A +GA E G + ++ K ++D F NALI M+ F
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 135 --TWTTMIVGLAISGNGDKALDMFSQ 158
W+ MI G A G+ A ++F +
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFDE 206
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D A++ + + A FD D V W+ MI G+ R A LF E
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESP 208
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+++ + ++TA A LG + ++F G D+
Sbjct: 209 VKDLV----SWNVMITAYAKLGDM-------------APARELFDGAPDRDV-------V 244
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G G+ +A+++F QM KPD V + +LSA
Sbjct: 245 SWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSA 287
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + F M +++ W ++I G E++ +F+++ N+
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
DE T V++L A ++ G ++ G E+ + +++ +I ++DM +
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSR 429
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G E+F KD++S+ +++ Y + AR+ FD P+RD V W MI GY+R
Sbjct: 197 IGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRC 256
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIF 118
++A+ LF+++Q D T++S+L+A A+ G L+ G + ++ +++
Sbjct: 257 GSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTA 316
Query: 119 AGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
GNALIDMY KC TW ++I GLA+ G+ +++ +F +ML+ +
Sbjct: 317 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN 376
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPDE+ +V VL+A +H
Sbjct: 377 VKPDEITFVAVLAACSHG 394
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-------IMGDEFTIVS 87
AR FD++P D ++ T+I G + R+A++++ + + + D+ T
Sbjct: 61 ARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPF 120
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------KCTVKF------- 134
+L A A +GA E G + ++ K ++D F NALI M+ F
Sbjct: 121 VLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEARED 180
Query: 135 --TWTTMIVGLAISGNGDKALDMFSQ 158
W+ MI G A G+ A ++F +
Sbjct: 181 AVAWSAMISGFARRGDIGAARELFDE 206
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D A++ + + A FD D V W+ MI G+ R A LF E
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDESP 208
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+++ + ++TA A LG + ++F G D+
Sbjct: 209 VKDLV----SWNVMITAYAKLGDM-------------APARELFDGAPDRDV-------V 244
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G G+ +A+++F QM KPD V + +LSA
Sbjct: 245 SWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSA 287
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + F M +++ W ++I G E++ +F+++ N+
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
DE T V++L A ++ G ++ G E+ + +++ +I ++DM +
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSR 429
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+FG KD IS+ +VSG+ N +D+A + F + P RD + W ++ GY R F E
Sbjct: 284 VFGEASEKDGISWNTMVSGFANAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEV 343
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF ++ S + D+ T V++++ A G+L + I ++ K D F +AL+DM
Sbjct: 344 MKLFHDMLASCVNPDKVTAVTLISVAAGKGSLNHAKSIHGWVVKQFGHQDAFLASALVDM 403
Query: 127 YCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+CKC VK WT MI GLA +G+G +AL++F +M +I P+ V
Sbjct: 404 HCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEAIAPNGVTL 463
Query: 172 VGVLSARTH 180
+ VLSA +H
Sbjct: 464 LAVLSACSH 472
Score = 55.5 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ YI+ V+ A F D V M+ GY+ +AL F+++ + I+
Sbjct: 164 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVA 223
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNALIDMYCKC-------- 130
D +T V++LT L + LG + I + D + NAL+DMY KC
Sbjct: 224 DRYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAER 283
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQ 158
+W TM+ G A +G D A FS+
Sbjct: 284 VFGEASEKDGISWNTMVSGFANAGMLDLASRFFSE 318
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G+ ++ FG ++D +A+V + V +A F++ ++D LWT MI G
Sbjct: 383 GWVVKQFG---HQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNG 439
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
EAL LF ++QT I + T++++L+A ++ G L+ G I +D K K I G
Sbjct: 440 HGTEALELFWKMQTEAIAPNGVTLLAVLSACSHAGLLDEGCRI---LDAMKQKYSIEPG- 495
Query: 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I+ + C V LA SG K +D + R ++P + +L+A
Sbjct: 496 --IEHF-GCMVDL--------LARSG---KLIDALALARRMPMRPSRSIWGSILNA 537
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + N ++I TAI+ Y ++ IAR F++MP+R+ V W +MI+ Y + R +EAL
Sbjct: 239 FMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEAL 298
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF ++ TS + D+ T +S+L+ A+ AL LG+ + Y+ K + DI AL+DMY
Sbjct: 299 DLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMY 358
Query: 128 CK------CTVKFT---------WTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAY 171
K F+ WT+MI GLA+ G+G++AL MF M +S+ PD + Y
Sbjct: 359 AKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITY 418
Query: 172 VGVLSARTH 180
+GVL A +H
Sbjct: 419 IGVLFACSH 427
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 22/188 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + T ++ Y++ + + FD +P+ + V WT +I GY++ N+ EAL +F+++
Sbjct: 138 DAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMS 197
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-------NKVKNDIFAGNALIDMY 127
N+ +E T+V+ L A A+ ++ G W+ I K + ++I A+++MY
Sbjct: 198 HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMY 257
Query: 128 CKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +K +W +MI +ALD+F M + + PD+ ++
Sbjct: 258 AKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFL 317
Query: 173 GVLSARTH 180
VLS H
Sbjct: 318 SVLSVCAH 325
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 14 KDVISYTAIVSGYINREQVDI--ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
K +I + ++ ++ E DI A Q+ +W +MI G++ + R ++ L++
Sbjct: 34 KSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYR 93
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + D FT +L A + + G+ I + I K+ + D + L+ MY C
Sbjct: 94 QMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCA 153
Query: 132 -----VK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+K WT +I G + +AL +F M +++P+E+ V L
Sbjct: 154 DMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALI 213
Query: 177 ARTHN 181
A H+
Sbjct: 214 ACAHS 218
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 18/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D S+ +VSGY ++ AR+ F +MPER V W+ MID +R F EAL +F ++
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKCT 131
+ D + S+L A A+LGALE G W+ ++ + +++ AL+DMYCKC
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
W MI GLA++G+G +AL++F +ML P+E +V VL
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362
Query: 177 ARTH 180
A TH
Sbjct: 363 ACTH 366
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V+ TA+V Y +D A FD + +D VLW MI G + AL LF+ +
Sbjct: 287 NVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRML 346
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI 104
+ +E T V +L A + G ++ G+ I
Sbjct: 347 DMGFVPNESTFVVVLCACTHTGRVDEGKEI 376
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ M ER+ V W ++I+GY R EALTLF+E+ + D FT+VS+L+A A
Sbjct: 194 AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 253
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTM 139
LGAL LG Y+ K + ++ AGNAL+D+Y KC +++ +WT++
Sbjct: 254 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 313
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
IVGLA++G G +AL++F ++ R + P E+ +VGVL A +H
Sbjct: 314 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F Q+ + W TMI GY AL L++++ S I D T +L A A
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTM 139
L + GE + + +N ++ +F N L+ MY C TW ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A++G ++AL +F +M ++PD V +LSA
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSA 250
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARA 93
A + FD+M E+ V WT++I G L VN F +EAL LF+E++ +M E T V +L A +
Sbjct: 295 AHKVFDEMEEKSVVSWTSLIVG-LAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS 353
Query: 94 NLGALELG 101
+ G ++ G
Sbjct: 354 HCGMVDEG 361
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F+ M ER+ V W ++I+GY R EALTLF+E+ + D FT+VS+L+A A
Sbjct: 49 AHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAE 108
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK--------------FTWTTM 139
LGAL LG Y+ K + ++ AGNAL+D+Y KC +++ +WT++
Sbjct: 109 LGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSL 168
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
IVGLA++G G +AL++F ++ R + P E+ +VGVL A +H
Sbjct: 169 IVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARA 93
A + FD+M E+ V WT++I G L VN F +EAL LF+E++ +M E T V +L A +
Sbjct: 150 AHKVFDEMEEKSVVSWTSLIVG-LAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS 208
Query: 94 NLGALELG 101
+ G ++ G
Sbjct: 209 HCGMVDEG 216
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD+MP+ V W+ MI GY+R +A+ LF+E+Q + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LGALEL W++ ++++ + + NALID KC +WT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
I LA+ G G +A+ +F +M A + PD+VA++GVL+A +H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
K V A++ VD A F+ M +R V WT++ID R +EA+ +F+E
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
++ + + D+ + +LTA ++ G ++ G Y D KV+ I
Sbjct: 322 MKVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGI 363
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 111/191 (58%), Gaps = 18/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+ G +N +++ A++S Y+ +D AR+ F+ MP R+ V W +MI GY + +
Sbjct: 161 EMLGAYRNS--VTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAM 218
Query: 66 ALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ LF+E+ T+ + DE T+VS+++A +LGALELG W+ ++ +N++K I NA+I
Sbjct: 219 AIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMI 278
Query: 125 DMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY +C ++ T+I G A G+G +A+++ S M I+PD V
Sbjct: 279 FMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV 338
Query: 170 AYVGVLSARTH 180
++GVL+A +H
Sbjct: 339 TFIGVLTACSH 349
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 23/175 (13%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++VI++TA+V+GY + ++ AR+ FD MPER V W M+ GY + EA
Sbjct: 96 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 155
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + + T ++++A +G L+ K+ N + N +
Sbjct: 156 LRLFDEMLGA--YRNSVTWNAMISAYMRVGDLD---------SARKLFNTMPGRNVV--- 201
Query: 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
TW +MI G A +G A+++F +M+ A + PDEV V V+SA H
Sbjct: 202 --------TWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 248
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ + A++ Y ++ A++ F +M RD V + T+I G+ EA+ L ++
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 330
Query: 76 SNIMGDEFTIVSILTARANLGALELG 101
I D T + +LTA ++ G LE G
Sbjct: 331 GGIEPDRVTFIGVLTACSHAGLLEEG 356
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD++S+ +++ Y +++ AR+ FD++P++D V W MI GY+ +E
Sbjct: 200 QLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKE 259
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALI 124
AL +F ++ D+ T++SIL+A A+LG LE+G+ I ++ D + NALI
Sbjct: 260 ALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALI 319
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +W ++I GLA+ G+ ++++++F +MLR +KP+E+
Sbjct: 320 DMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEI 379
Query: 170 AYVGVLSARTH 180
+V VL A +H
Sbjct: 380 TFVAVLVACSH 390
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ VS + +D A Q F Q+ + D +W TMI G + + A++L+ +++
Sbjct: 47 VLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMEN 106
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----T 131
+ D+FT +L A L ++LG I + K+ +++ F N LI + C T
Sbjct: 107 RGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLAT 166
Query: 132 VK-----------FTWTTMIVGLAISGNGDKALDMFSQM 159
+ W+ + G A G D A +F +M
Sbjct: 167 ARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEM 205
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 24/143 (16%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD +R+ V W+ + GY R + A LF E+ M D + ++TA A
Sbjct: 167 ARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMP----MKDLVSWNVMITAYAK 222
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G +E + + K V TW MI G +S +AL+
Sbjct: 223 HGEMEKARKLFDEVPKKDV--------------------VTWNAMIAGYVLSRLNKEALE 262
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
MF M +PD+V + +LSA
Sbjct: 263 MFDAMRDLGQRPDDVTMLSILSA 285
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V+ A++ Y + A + F M ++D W ++I G E++ LFQE+
Sbjct: 312 VLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLR 371
Query: 76 SNIMGDEFTIVSILTARANLGALELGE 102
+ +E T V++L A ++ G + G
Sbjct: 372 LKMKPNEITFVAVLVACSHAGKVREGR 398
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 110/191 (57%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M ++ S+ +++GYI +++ A++ F +MP RD V W+TMI G+ F E
Sbjct: 360 EIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNE 419
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ + F+E+ + + +E ++ +L+A + GA E G+ + +++K+ + NALID
Sbjct: 420 SFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALID 479
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY +C +WT+MI GLA+ G+G++A+ +F++M + + PDE+
Sbjct: 480 MYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEI 539
Query: 170 AYVGVLSARTH 180
+++ +L A +H
Sbjct: 540 SFISLLYACSH 550
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 24/149 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F+ M E R V WT+MI G EA+ +F E+ S +M
Sbjct: 476 ALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVM 535
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK----VKNDIFAGNALIDMY-------- 127
DE + +S+L A ++ G ++ GE Y K K ++ + ++D+Y
Sbjct: 536 PDEISFISLLYACSHAGLIKEGE---GYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQK 592
Query: 128 -----CKCTVKFT---WTTMIVGLAISGN 148
C+ + T W T++ + GN
Sbjct: 593 AYSFICQMPIPPTAIVWRTLLGACSSHGN 621
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARA 93
AR+ PE D ++ T++ GY + ++ +F E+ I D F+ ++ A A
Sbjct: 225 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAA 284
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
N +L G + K+ + + +F LI MY +C
Sbjct: 285 NFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGEC 321
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 18/164 (10%)
Query: 35 ARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
A + FD++P ER+ V W +M++G+ R E LT+F+E+ N M D FT+VS+LTA
Sbjct: 172 AHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTAS 231
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKFTW 136
A +GAL LG + Y+ K + + GNALID+Y KC +W
Sbjct: 232 AEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSW 291
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
T++IVGLA++G G +AL++F M R + P E+ VGVL A +H
Sbjct: 292 TSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSH 335
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVL-WTTMIDGYLRVNRF-REALTLFQEIQTSNI 78
A++ Y V+ AR+ F++M R V+ WT++I G L VN F +EAL LF ++ +
Sbjct: 261 ALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVG-LAVNGFGKEALELFGIMEREKL 319
Query: 79 MGDEFTIVSILTARANLGALELG 101
+ E T+V +L A ++ G ++ G
Sbjct: 320 VPTEITMVGVLYACSHCGLVDDG 342
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++++S +++ G++ V+ A F +MP RD V W +M+ Y + + EA
Sbjct: 118 LFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEA 177
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++ + E T+VS+L+A A+LGAL+ G + TYI+ N+++ + G AL+DM
Sbjct: 178 LALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDM 237
Query: 127 YCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T F W T+I G+AI G+ +A +F +M A ++P+++ +
Sbjct: 238 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITF 297
Query: 172 VGVLSARTH 180
V +LSA +H
Sbjct: 298 VAMLSACSH 306
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 49/83 (59%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A Q F+ M +D + W T+I G + +EA LF+E++ + +
Sbjct: 232 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVE 291
Query: 80 GDEFTIVSILTARANLGALELGE 102
++ T V++L+A ++ G ++ G+
Sbjct: 292 PNDITFVAMLSACSHAGMVDEGQ 314
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 21/186 (11%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V ++T++VS Y R +V++AR+ FDQM ERD V WT MI GY F+EAL LF E++
Sbjct: 250 VAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELED 309
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK---NDIFAGNALIDMYCKC-- 130
+ DE +V+ L+A A LGALELG I D++ + N F A++DMY KC
Sbjct: 310 LGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTC-AVVDMYAKCGS 368
Query: 131 ---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F + +++ GLA G G+ A+ +F +M ++PDEV YV +L
Sbjct: 369 IEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALL 428
Query: 176 SARTHN 181
A H+
Sbjct: 429 CACGHS 434
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 51/221 (23%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +V A++ Y A + FD+ P RD V + T+I+G +R R +
Sbjct: 106 VFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCS 165
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK---VKNDIFAGNAL 123
+ +F E++ + DE+T V++L+A + L +G + + + +N++ NAL
Sbjct: 166 MRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLV-NAL 224
Query: 124 IDMYCKC--------TVK---------------------------------------FTW 136
+DMY KC V+ +W
Sbjct: 225 VDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSW 284
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T MI G +G +AL++F ++ ++PDEV V LSA
Sbjct: 285 TAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSA 325
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F TM + +IS+ +V GY VDIAR+ FD MP+RD V M+ GY++ EA
Sbjct: 277 LFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEA 336
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++Q SN+ D T++ +L+A A LG +E G I YI +N + G ALID
Sbjct: 337 LGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALID 396
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W MI GLAI G G+ AL +M R KPD++
Sbjct: 397 MYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDIT 456
Query: 171 YVGVLSARTH 180
++G+L+A H
Sbjct: 457 FIGLLNACGH 466
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 59/210 (28%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFD---------------------- 40
+ ++F M +D +SY ++++GY+ +D+ARQ +D
Sbjct: 177 YARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRS 236
Query: 41 ------------QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
+MPERD + W +MIDG + R +A LF + I+ + ++
Sbjct: 237 DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTII----SWANM 292
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
+ A LG +++ + + D N D+ A NA++ Y + +G
Sbjct: 293 VDGYAKLGYVDIA---RKFFD-NMPDRDVVACNAMMSGYVQ----------------NGY 332
Query: 149 GDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+AL +F M R S + PD + VLSA
Sbjct: 333 CMEALGIFHDMQRESNLCPDNATLLIVLSA 362
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103
+ D LW +I + N ++AL +F + + + D+F++ +L A + LG ++ G
Sbjct: 86 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 145
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGN 148
I + K K +D+F N LI +Y KC ++ +MI G GN
Sbjct: 146 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 205
Query: 149 GDKALDMFSQM 159
D A ++ M
Sbjct: 206 IDLARQLYDVM 216
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + +S+ A++ GY + AR+ FD+MP RD V W+ MIDG ++ +REA
Sbjct: 118 LFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREA 177
Query: 67 LTLFQEIQTS----NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
L LF+ ++ + + ++ T++S+L A A+LG L G + Y+ + ++ +
Sbjct: 178 LALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATS 237
Query: 123 LIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
L+DMY KC T W MI GLA+ G G + +++F +M + +
Sbjct: 238 LVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVV 297
Query: 166 PDEVAYVGVLSARTHN 181
PDE+ Y+G+LSA H
Sbjct: 298 PDEITYLGLLSACVHG 313
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T++V Y ++ A + FD +P+++ V WT +I GY+ V +FREA+ +F+ +
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL 205
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
N+ D FTIV +L+A LG L GEWI I + + ++F G +L+DMY KC
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G A++G +A+D+F QM R ++KPD VGVLSA
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSA 323
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V T++V Y ++ AR FD MPE+D V W MI GY +EA+ LF ++
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
Q N+ D +T+V +L+A A LGALELGEW+ +D+N+ + G ALID+Y KC
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ W +I GLA++G + +F Q+ + IKPD ++G+L
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425
Query: 179 TH 180
TH
Sbjct: 426 TH 427
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 36 RQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95
R F Q+ + + LW TMI G + + F +A+ + +++ + + FT +L A A L
Sbjct: 66 RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125
Query: 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMI 140
L+LG I T + K D+F +L+ +Y KC +WT +I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
G G +A+DMF ++L ++ PD V VLSA T
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQ 225
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
+V+ +V GY + AR+ FD+M +R V W MI GY + ++EA+ +F +
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TV 132
Q +++ + T+VS+L A + LG LELG+W+ Y +KNK++ D G+AL+DMY KC ++
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317
Query: 133 K--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ TW +I GLA+ G + + S+M + I P +V Y+ +LSA
Sbjct: 318 EKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSAC 377
Query: 179 TH 180
+H
Sbjct: 378 SH 379
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRV-NRFREALTLF-QEIQTSNIMGDEFTIVSILTAR 92
A FDQ+PER+ W T+I +R +AL +F Q + + + ++FT S+L A
Sbjct: 68 ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
A + L G+ + + K + +D F L+ MY C
Sbjct: 128 AVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMC 165
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK D + +A+V Y ++ A Q F+++P+ + + W +I G + +
Sbjct: 294 KNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFN 353
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMY 127
++ I + T ++IL+A ++ G ++ G + ++ +K I ++D+
Sbjct: 354 YLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDL- 412
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G ++A ++ +L +KPD+V + +L A
Sbjct: 413 ---------------LGRAGYLEEAEEL---ILNMPMKPDDVIWKALLGA 444
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y+ +D AR+ FD++PE++ V+W ++I GY ++ E + L +E+ SN+
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D FT+ +L+A A +GA LG W+ + +K + D+F G ALIDMY KC
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKV 365
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TW ++ G A G + A+++FS+M + +PD + ++ VL A H+
Sbjct: 366 FDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNI 78
+++++ Y+ ++ A+Q FD+ +D V W +I GY R ++ +F+E ++ +
Sbjct: 144 SSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEV 203
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCKCTV----- 132
+E T++ ++ A L+LG I Y+ K+ V + + ALI++Y KC
Sbjct: 204 RPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGAR 263
Query: 133 ----------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W ++I G G+ ++ +++ +M +++KPD GVLSA
Sbjct: 264 KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSA 318
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA++ Y + AR+ FDQM ER+ W ++ GY + A+ LF E++
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
S D T +++L A A+ G +E G K Y D
Sbjct: 402 ESGARPDSITFLAVLHACAHSGLVENG---KQYFD 433
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNI 78
T I++ +++ +D A Q F+Q E D ++ MI Y A++++ +++ NI
Sbjct: 42 TKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNI 101
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------- 131
+GD++T + A A+ A+E G+ + I + + D F ++L++ Y C
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161
Query: 132 ---------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 177
V F W +I G A G + +F +M+ ++P+E +G++ A
Sbjct: 162 VFDEFDAKDVVF-WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVA 216
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M ++++S++ +V GY +D+AR FD+ P ++ VLWTT+I GY
Sbjct: 235 MDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEK 294
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
REA L+ +++ + + D+ ++SIL A A G L LG+ I + + + +
Sbjct: 295 GFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVL 354
Query: 121 NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NA IDMY KC +W +MI G A+ G+G+KAL++FS+M+
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGF 414
Query: 165 KPDEVAYVGVLSARTH 180
+PD +VG+L A TH
Sbjct: 415 EPDTYTFVGLLCACTH 430
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+ +F MK +DV+++ +++ G + +++ A + FD+MPERD V W TM+DGY +
Sbjct: 177 MSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMD 236
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A LF+ + NI+ + +++ + G +++ + D+ KN +
Sbjct: 237 RAFELFERMPQRNIV----SWSTMVCGYSKGGDMDMA---RVLFDRCPAKNVVL------ 283
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WTT+I G A G +A +++ +M A ++PD+ + +L+A
Sbjct: 284 -----------WTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAA 325
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 20/144 (13%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL--FQEIQTSNIMGDEFTIVSILTAR 92
A F+ +P + L+ ++I + N +L F ++Q + + D FT +L A
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAH-NTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKAC 130
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK-----------------FT 135
+L L I +++K DIF N+LID Y +C T
Sbjct: 131 TGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVT 190
Query: 136 WTTMIVGLAISGNGDKALDMFSQM 159
W +MI GL G + A +F +M
Sbjct: 191 WNSMIGGLVRCGELEGACKLFDEM 214
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 105/177 (59%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNI 78
+A+V+ Y + ARQ FDQ+ ++D W+ +I GY++ NR EAL LF+E+ SN+
Sbjct: 219 SALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
+E TI+++++A A LG LE G W+ YI + + + + N+LIDM+ KC
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
Query: 131 ---TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
++ + +W +M+ GLA+ G G +AL F M ++PDE+ ++GVL+A +H
Sbjct: 339 IFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSH 395
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++ M + D+ T +++ Y + AR F++M R+ V+WT+MI GY++ + E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L+++++ DE T+ ++++A A L L +G + ++I + +K G+AL++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEV 169
MY KC T + + W+ +I G + +AL +F ++ S ++P+EV
Sbjct: 224 MYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283
Query: 170 AYVGVLSA 177
+ V+SA
Sbjct: 284 TILAVISA 291
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWI 104
D + W +M+ ++ N R AL + E ++ S + D FT S+L A L ++G+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 105 KTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNG 149
+ K + +D++ L++MY C K WT+MI G +
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL ++ +M PDEV ++SA
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSA 189
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T K V +++ + +D A++ FD M +D + W +M++G REAL
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQ 370
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK---NKVKNDIFAGNALIDM 126
F +QT+++ DE T + +LTA ++ G ++ G+ + I+ ++K++ + ++D+
Sbjct: 371 FHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG--CMVDL 428
Query: 127 YCK 129
C+
Sbjct: 429 LCR 431
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 111/188 (59%), Gaps = 17/188 (9%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ ++VI A++ Y+ + A F++MP+RD V WTTMI GY + EA+ +
Sbjct: 145 TLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRV 204
Query: 70 FQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFAGNALIDMY 127
FQ + + +E T+V++L+A +++ AL LG+W+ +YI+ ++ V D GNALI+MY
Sbjct: 205 FQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMY 264
Query: 128 CKC--------TVKFT-------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC K T W+T+I GLA++G G +A +FS ML I PD+V ++
Sbjct: 265 VKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFL 324
Query: 173 GVLSARTH 180
G+LSA +H
Sbjct: 325 GLLSACSH 332
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D+ +++ YI V A FD +P+ D V WT++I G ++ +EAL+ F +
Sbjct: 51 SDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM 110
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
N+ + T+V+ L+ ++L L+LG+ I + + ++ NAL+D Y +C
Sbjct: 111 ---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYL 167
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+WTTMI G A SG ++A+ +F M+ P+E V VLSA
Sbjct: 168 RSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSA 227
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 114/198 (57%), Gaps = 21/198 (10%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ +F M +KD +++ +++G + ++D AR+ FD+ E+D V W MI GY+
Sbjct: 197 AMRLFDEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAG-- 120
+EAL++F+E++ + D TI+S+L+A A LG LE G+ + YI + V + I+ G
Sbjct: 257 KEALSIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 121 --NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NALIDMY KC TW T+IVGLA+ + + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLK 375
Query: 164 IKPDEVAYVGVLSARTHN 181
+ P+EV ++GV+ A +H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 105/183 (57%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV+SYTA+++GY +R ++ A + FD++P +D V W I GY ++EAL LF++
Sbjct: 166 HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ +N+ DE T+V++L+A A G++ELG + ++I+ + ++ NALID+Y KC
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285
Query: 133 KFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T W T+I G +AL +F MLR+ KP++V + +LSA
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345
Query: 178 RTH 180
H
Sbjct: 346 CAH 348
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F + +D + W T+I GY +N ++EAL LFQ++ S
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKP 334
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL+A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 335 NDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQ 394
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 395 VFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD M R W MI G+ R A +F ++ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 80 GDEFTIVSILTARANLGALELGEWI 104
D+ T V +L+A ++ G L+LG I
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHI 461
>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F TM + +IS+ +V GY VDIAR+ FD MP+RD V M+ GY++ EA
Sbjct: 253 LFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEA 312
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++Q SN+ D T++ +L+A A LG +E G I YI +N + G ALID
Sbjct: 313 LGIFHDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALID 372
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W MI GLAI G G+ AL +M R KPD++
Sbjct: 373 MYSKCGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDIT 432
Query: 171 YVGVLSARTH 180
++G+L+A H
Sbjct: 433 FIGLLNACGH 442
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 59/210 (28%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFD---------------------- 40
+ ++F M +D +SY ++++GY+ +D+ARQ +D
Sbjct: 153 YARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRS 212
Query: 41 ------------QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
+MPERD + W +MIDG + R +A LF + I+ + ++
Sbjct: 213 DNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTII----SWANM 268
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
+ A LG +++ + + D N D+ A NA++ Y + +G
Sbjct: 269 VDGYAKLGYVDIA---RKFFD-NMPDRDVVACNAMMSGYVQ----------------NGY 308
Query: 149 GDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+AL +F M R S + PD + VLSA
Sbjct: 309 CMEALGIFHDMQRESNLCPDNATLLIVLSA 338
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103
+ D LW +I + N ++AL +F + + + D+F++ +L A + LG ++ G
Sbjct: 62 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 121
Query: 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGN 148
I + K K +D+F N LI +Y KC ++ +MI G GN
Sbjct: 122 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 181
Query: 149 GDKALDMFSQM 159
D A ++ M
Sbjct: 182 IDLARQLYDVM 192
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++D ++ T +++ Y + A + F + +D V WT MIDG +R +
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+Q N+ +EFT V +L+A ++LGALELG W+ ++++ +++ F GNALI+
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALIN 298
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY +C ++ TMI GLA+ G +A++ F M+ +P++V
Sbjct: 299 MYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVT 358
Query: 171 YVGVLSARTH 180
V +L+A +H
Sbjct: 359 LVALLNACSH 368
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I T ++D ++ + VD A F + + L+T MIDG++ R +
Sbjct: 51 KIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSAD 110
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTA-------RANLGALELG---------EWIKTYID 109
++L+ + ++++ D + I S+L A + L+LG + ++ Y
Sbjct: 111 GVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGK 170
Query: 110 KNKVKN-----------DIFAGNALIDMYCKC-------------TVKFT--WTTMIVGL 143
++ N D A +I+ Y +C +K T WT MI GL
Sbjct: 171 SGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGL 230
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +KAL++F +M ++ +E V VLSA
Sbjct: 231 VRNKEMNKALELFREMQMENVSANEFTAVCVLSA 264
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y ++ AR+ F M ++D + + TMI G EA+ F+++
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 80 GDEFTIVSILTARANLGALELG 101
++ T+V++L A ++ G L++G
Sbjct: 354 PNQVTLVALLNACSHGGLLDIG 375
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +M ++VI+ T++VSGY AR F +M ER+ V W +I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L+LF ++ ++ +T +IL A A+L L LG ++ K+ K +DIF G
Sbjct: 371 LSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +W MI+G A +G G++AL++F +ML + K
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEK 490
Query: 166 PDEVAYVGVLSARTH 180
PD + +GVLSA H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V ++ ++V+G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F + + +E+T S L+A + L + G I + I K+ +D++ G+AL+D
Sbjct: 136 ALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVD 195
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W ++I +G +AL +F ML + ++PDEV
Sbjct: 196 MYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVT 255
Query: 171 YVGVLSA 177
V+SA
Sbjct: 256 LASVISA 262
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 20/183 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y V+ A+Q FD+M +R+ V W ++I Y + EAL +FQ +
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVML 245
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCT-- 131
S + DE T+ S+++A A+L A+++G+ + + K +K++NDI NA +DMY KC+
Sbjct: 246 ESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRI 305
Query: 132 --VKFTW-----------TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+F + T+M+ G A++ + A MF++M ++ V++ +++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNV----VSWNALIAGY 361
Query: 179 THN 181
T N
Sbjct: 362 TQN 364
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ V+ F +M ERD V W MI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+E+ S D T++ +L+A + G +E G + + ++ F L D Y
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRD------FGVAPLRDHY 532
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T M+ L +G ++A + +M ++PD V + +L+A
Sbjct: 533 ---------TCMVDLLGRAGFLEEAKSIIEEM---PVQPDSVIWGSLLAA 570
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ YI +V+ A F+ + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 275 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+E+G WI YI+K V N +LIDMY KC
Sbjct: 335 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 394
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 395 VFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY ++ + A++ FD++P +D V W MI GY +E
Sbjct: 159 KVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKE 218
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+VS+++A A ++ELG + ++ID + +++ NALID
Sbjct: 219 ALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALID 278
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 279 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 338
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 339 MLSILPACAH 348
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD + R W MI G+ R A +F ++ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T V +L+A ++ G L+LG I ++ + K+ + +ID+
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL------------ 484
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG +A +M + M ++PD V + +L A
Sbjct: 485 ----LGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKA 516
>gi|255542098|ref|XP_002512113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549293|gb|EEF50782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 336
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 19/192 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + V+S+T ++SG+ ++ AR FD P +D + MI GY++ N F+E
Sbjct: 114 VFDEIPGPCVVSWTLMISGFAKVGDIESARLFFDGAPRKDRGICGAMISGYVQNNCFKEC 173
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F IQ ++ + DE +SIL A A LGAL+ G WI Y+D+ + I LIDM
Sbjct: 174 LYMFSMIQLTDNVPDEGIFLSILCACAQLGALDTGIWIHRYMDRLGLPLTIRLSTGLIDM 233
Query: 127 YCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC TV W MI GLA+ G+G+ A+++F +M A KPD+V
Sbjct: 234 YAKCGNVDLAKSLFDEMPQRDTV--CWNVMISGLAMHGDGEGAINLFLKMEEAGFKPDDV 291
Query: 170 AYVGVLSARTHN 181
++ +LSA +++
Sbjct: 292 TFIAILSACSYS 303
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ YI +V+ A F+ + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 260 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+E+G WI YI+K V N +LIDMY KC
Sbjct: 320 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 379
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 380 VFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY ++ + A++ FD++P +D V W MI GY +E
Sbjct: 144 KVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKE 203
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+VS+++A A ++ELG + ++ID + +++ NALID
Sbjct: 204 ALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALID 263
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 264 LYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 323
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 324 MLSILPACAH 333
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD + R W MI G+ R A +F ++ + I
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T V +L+A ++ G L+LG I ++ + K+ + +ID+
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL------------ 469
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG +A +M + M ++PD V + +L A
Sbjct: 470 ----LGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKA 501
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 15/158 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++VS Y E++ +A+Q FD++ ER+ V W+ MI GY RV EAL++F+E+Q I
Sbjct: 271 SSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMVNEALSMFREMQEVGIE 330
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
DE ++V +++A A GAL++G WI YI K + D+ AL++MY KC
Sbjct: 331 PDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEI 390
Query: 131 ----TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRA 162
VK + W++MIVGLAI G + AL+MFS+M A
Sbjct: 391 FDYMPVKDSKAWSSMIVGLAIHGLAEDALEMFSRMEEA 428
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDG--YLRVNRFREALTLFQEIQTSNIM-GDEFTIVSI 88
++ AR+ F Q+P + T+I G Y + N RE L++ + T + FT+ +
Sbjct: 180 LNYARKIFAQIPNPGIFPYNTIIRGCSYAK-NPSREPYFLYKSMVTRGFPRANTFTMAFV 238
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKFT------------ 135
L A A++ A E G I I ++ + + ++L+ +Y KC ++
Sbjct: 239 LKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNL 298
Query: 136 --WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI G A G ++AL MF +M I+PDEV+ VGV+SA
Sbjct: 299 VCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISA 342
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV++ + + +VD AR+ FD MP R W+ M+ Y R R ++A+ LF +Q
Sbjct: 205 DVVACNSAIVALTRAGRVDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQ 264
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--- 131
S + + +VS+L A LGALE G W+ YIDK+ V + AL+DMYCKC
Sbjct: 265 ASGVEPNANVLVSVLGCCAALGALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIH 324
Query: 132 --------------VKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
K +W M++GLA+ G +AL +FS++ + PD V ++ +L
Sbjct: 325 KARHVFDASRSQGLAKLSSWNAMMLGLAVHGQCQEALALFSELETYGLSPDNVTFITILM 384
Query: 177 ARTHN 181
A H+
Sbjct: 385 AYGHS 389
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y + AR FD + W M+ G + +EAL LF E++T
Sbjct: 311 TALVDMYCKCGSIHKARHVFDASRSQGLAKLSSWNAMMLGLAVHGQCQEALALFSELETY 370
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T ++IL A + G
Sbjct: 371 GLSPDNVTFITILMAYGHSG 390
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 109/197 (55%), Gaps = 22/197 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+ + ++++GY+ R +D AR+ F +MPER+ V WTTMI GY + + ++
Sbjct: 188 KVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQ 247
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND----IFAGN 121
AL LF +++ + + D+ +++ LTA A LG L++G WI +YI V ++ + N
Sbjct: 248 ALNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNN 307
Query: 122 ALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR---AS 163
ALI MY C + +WT++I A G L++F M R +
Sbjct: 308 ALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSE 367
Query: 164 IKPDEVAYVGVLSARTH 180
+PD + ++GVL A +H
Sbjct: 368 ARPDGITFIGVLCACSH 384
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 18/192 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ ++V++ +++SGY+++ V+ AR FD+M +D W+ MI GY + EA
Sbjct: 180 VLAECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEA 239
Query: 67 LTLFQE---IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
L +F+E + S + +E +VS L+A A LGAL+ G WI YI + K I G L
Sbjct: 240 LVMFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAKISITLGTGL 299
Query: 124 IDMYCK-----CTVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DMY K C+ K TW M+ G A+ G K +F +M+ +P+E
Sbjct: 300 VDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNE 359
Query: 169 VAYVGVLSARTH 180
V +V +LSA +H
Sbjct: 360 VIFVAILSACSH 371
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +V Y + + + F +M +RD V W M+ G+ + R+ LF E+
Sbjct: 297 TGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTR 356
Query: 80 GDEFTIVSILTARANLGALELGE 102
+E V+IL+A ++ G LELG
Sbjct: 357 PNEVIFVAILSACSHAGYLELGH 379
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 109/191 (57%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M +KDV+S+T +++ Y N +D A + F+QMP ++ V W ++I +++ + E
Sbjct: 291 SVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAE 350
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF + S +M ++ T+V+IL++ +++G L LG+ +YI N + NA+ID
Sbjct: 351 AVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIID 410
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W +I LA+ G G +A++MF +M + + PDE+
Sbjct: 411 MYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEIT 470
Query: 171 YVGVLSARTHN 181
+ G+LSA +H+
Sbjct: 471 FTGLLSACSHS 481
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI++ Y+ + AR+ FD + ER V W +MI+GY ++ R EA+ +F+E+Q +
Sbjct: 174 AILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEP 233
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK------ 133
D FT+V +L+ G +LG ++ ++ ++ D NAL+DMY KC +K
Sbjct: 234 DVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVF 293
Query: 134 --------FTWTTMIVGLAISGNGDKALDMFSQM 159
+WT MI A G D AL+ F+QM
Sbjct: 294 DQMLDKDVVSWTCMINAYANHGLIDCALEFFNQM 327
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V++ +VS + + A + FDQ+P+ + ++ +I GY + ++L L++ +
Sbjct: 68 VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVC 127
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--- 132
I+ ++FTI +L A A LG + K + + NA++++Y C +
Sbjct: 128 DGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITS 187
Query: 133 ------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W +MI G + G ++A+ MF +M ++PD VG+LS T
Sbjct: 188 ARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTK 247
Query: 181 N 181
+
Sbjct: 248 H 248
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI+ Y + A F MPE++ V W +I +EA+ +F+++Q S +
Sbjct: 407 AIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCP 466
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
DE T +L+A ++ G ++ G+ Y + + N F + ++ Y C V +
Sbjct: 467 DEITFTGLLSACSHSGLVDTGQ---HYFE---IMNLTFGISPDVEHY-ACMVDLLGRRGL 519
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+G AI S + + +KPD V + +L A RT+
Sbjct: 520 LGEAI-----------SLIKKMPVKPDVVVWSALLGACRTY 549
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 16/189 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M+ KDV+S+ ++S + Q+ AR+ F MP++ V WT ++ GY V F A+
Sbjct: 174 FDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAV 233
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F+ +Q D+ +IV++L A A LGALELG WI Y K+ + ++ NAL++MY
Sbjct: 234 EVFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMY 293
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAY 171
KC +W+T I GLA G +A+ +F M R + P+ + +
Sbjct: 294 AKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITF 353
Query: 172 VGVLSARTH 180
VG+LSA +H
Sbjct: 354 VGLLSACSH 362
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 54/193 (27%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-------QTSNI-MGDEFTIVSILT 90
F Q+P + L MI Y + + R+A+ ++ + T+ +GD FT +L
Sbjct: 65 FAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLK 124
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------------- 130
A L A LG + ++ ++ ++ N+LI+MY +C
Sbjct: 125 ACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVS 184
Query: 131 --------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+WT ++ G G+ A+++F M
Sbjct: 185 WNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGF 244
Query: 165 KPDEVAYVGVLSA 177
+PD+V+ V VL A
Sbjct: 245 EPDDVSIVAVLPA 257
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
AI+ Y + ++ A++ F+++ E+D + WT+M+ G + F+E+L LF+++Q I
Sbjct: 50 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
DE T+V +L+A A GAL+ G++I IDK ++ D+ AL+DMY KC
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 169
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
V+ FTW MI GLA+ G+G+ A+ +F QM + PD+V ++ +L A +H
Sbjct: 170 FRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSH 225
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 15/116 (12%)
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------ 130
N+ DE T+VS++ A A LG LE G+ + +Y + + ++ NA++DMYCKC
Sbjct: 6 NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65
Query: 131 ---------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT+M+ GLA SG ++L +F +M I+PDE+ VGVLSA
Sbjct: 66 QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSA 121
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N D++ TA+V Y +D+A Q F +M R+ W MI G +A++LF +
Sbjct: 144 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQ 203
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
++ +M D+ T +++L A ++ G ++ G + +K +++ + ++D+ C+
Sbjct: 204 MEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCR 261
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +++ AR FD+ E+ W MI GY + +A++LFQE+Q +
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ T+ SIL+A A LGAL LG+W+ I++ +++IF ALIDMY KC
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW MI G + G G +AL++F++ML + + P V ++ VL A +H
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSH 522
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
D+ +AIV+ Y +V AR+ FD M ERD VLW TM+ G ++ + F EA+ +F ++
Sbjct: 139 SDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDM 198
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
I D T+ ++L A L L LG I+ K + + L +Y KC
Sbjct: 199 VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEI 258
Query: 131 -TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
T + ++ MI G + + ++ +F ++L + K + + VG++
Sbjct: 259 ETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIP 316
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 19/179 (10%)
Query: 18 SYTAIVSG----YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
S+ +++G Y +++ AR F Q+ + D V + MI GY N ++ LF+E+
Sbjct: 240 SHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL 299
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---- 129
S + +IV ++ G L L I + K+ V ++ AL +Y +
Sbjct: 300 LVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEI 359
Query: 130 --CTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ F +W MI G A +G +KA+ +F +M + ++P+ V +LSA
Sbjct: 360 ESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSA 418
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++ TA++ Y + A++ F MPE++ V W MI GY EAL LF E+
Sbjct: 442 SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEM 501
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S + T +S+L A ++ G + G+ I ++ V + F L + Y C V
Sbjct: 502 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIF----RSMVHDHGF--EPLPEHY-ACMVD 554
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +GN DKALD +M ++P + +L A
Sbjct: 555 L--------LGRAGNLDKALDFIRKM---PVEPGPPVWGALLGA 587
>gi|224107245|ref|XP_002314420.1| predicted protein [Populus trichocarpa]
gi|222863460|gb|EEF00591.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F LE FG MK+ V S A+++G+I +D AR+ F++MPERD W+TMI GY + ++
Sbjct: 249 FQLE-FG-MKDH-VASRNALIAGFIRNRIIDQARELFNEMPERDVFSWSTMISGYTQSDQ 305
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
AL LF + TS I +E T+VS+ +A A LG L+ G W Y+ N + + +
Sbjct: 306 PGMALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSAS 365
Query: 123 LIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+IDMY KC + W T+I GLA G+ +L+++S + R IK
Sbjct: 366 IIDMYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSDLQRRHIK 425
Query: 166 PDEVAYVGVLSARTH 180
+ ++GVLSA H
Sbjct: 426 LSAITFIGVLSACCH 440
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 46/223 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M+ K+V+S+ +++GY ++A++ F+ +P++D V W T+IDGY+RV
Sbjct: 112 LGEARALFDEMQEKNVVSWNVMLNGYSKAGFANLAKEVFEMIPDKDIVSWGTIIDGYVRV 171
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-------- 112
R REAL +++ + ++ + E T++ +++A A+ G+ + + K
Sbjct: 172 ERLREALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQ 231
Query: 113 -----------------------VKNDIFAGNALIDMYCKCTV---------------KF 134
+K+ + + NALI + + + F
Sbjct: 232 ATVIHFYSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNEMPERDVF 291
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+TMI G S AL++F +M+ + I+P+EV V V SA
Sbjct: 292 SWSTMISGYTQSDQPGMALELFHRMVTSGIRPNEVTMVSVFSA 334
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 77/150 (51%), Gaps = 15/150 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++SGY+ +D AR+ F+ MP++ V +TTMI G+++ + + EA+ +++E+++ ++ +
Sbjct: 1 MISGYVKSGNLDDARKLFEVMPQKGCVSYTTMIMGFVKNDFWGEAIKVYKEMRSVGVVPN 60
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------- 132
E T+ S+++A +G + + + K + L++MYC +
Sbjct: 61 EVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLLNMYCASSSLGEARALFD 120
Query: 133 ------KFTWTTMIVGLAISGNGDKALDMF 156
+W M+ G + +G + A ++F
Sbjct: 121 EMQEKNVVSWNVMLNGYSKAGFANLAKEVF 150
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 18/184 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+ +VSGY ++ AR+ F +MPER V W+ MID +R F EAL +F ++
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNALIDMYCKCT 131
+ D +VS+L A+LGALE G W+ ++ ++ ++ AL+DMYCKC
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
W MI GLA++G+G +AL++F +ML P+E +V L
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALC 327
Query: 177 ARTH 180
A H
Sbjct: 328 ACIH 331
Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V+ TA+V Y ++ A FD + D VLW MI G + AL LF+ +
Sbjct: 252 NVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRML 311
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
+ +E T V L A + G ++ GE
Sbjct: 312 DKGFVPNESTFVVALCACIHTGRVDEGE 339
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF +++ G + + V TA+ + Y ++ ARQ FD+ E+ W MI G +
Sbjct: 156 GFCVKL-GIVSHSSV--STALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNG 212
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
A++LFQ +Q +N+ + T+ SIL+A A +GAL LGEW+ + I N+ +++++
Sbjct: 213 LTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVST 272
Query: 122 ALIDMYCKC---TV------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALIDMY KC TV + TW MI G + G+G +AL +F ML +S+KP
Sbjct: 273 ALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKP 332
Query: 167 DEVAYVGVLSARTH 180
+ ++ VL A +H
Sbjct: 333 TGLTFLSVLYACSH 346
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V TA++ Y + +AR+ FD MPE++ V W MI GY +EAL LF ++
Sbjct: 267 NVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDML 326
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI 104
+S++ T +S+L A ++ G ++ G+ I
Sbjct: 327 SSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++S + +V+IAR F ++ ++D + MI G+ +++ LF+E+ +S
Sbjct: 70 TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER 129
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF----- 134
TIV ++ + G L I + K + + AL +YC+
Sbjct: 130 VSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQL 189
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G +G D A+ +F M + ++ P+ V +LSA
Sbjct: 190 FDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSA 242
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD +++ +++ GY+ VD A F QMP + V WT +I G+++ + +A
Sbjct: 176 VFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++ + TIV +L+A A++GAL+LG I Y K+ +I NAL+DM
Sbjct: 236 LELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDM 295
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y K FTWTTMI + GNG KA+++F MLR+ I P+ V +
Sbjct: 296 YAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTF 355
Query: 172 VGVLSARTH 180
V VLSA +H
Sbjct: 356 VSVLSACSH 364
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 48/190 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD++P D + +T+++ +L+++ +A+++F S D F V L+A
Sbjct: 72 AGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGG 131
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF-------------------- 134
LG +G + I + + +++ NAL+DMYC+C KF
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCG-KFEPARTVFDRMLVKDEVTWGS 190
Query: 135 ---------------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
+WT +I G +AL++F +ML +P+
Sbjct: 191 MLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPN 250
Query: 168 EVAYVGVLSA 177
+ VGVLSA
Sbjct: 251 HITIVGVLSA 260
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G + +G+ N ++I A++ Y + A F+++ +D WTTMI +
Sbjct: 269 LGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFT 328
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
R+A+ LF ++ S I+ + T VS+L+A ++ G ++ G
Sbjct: 329 VQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD +++ +++ GY+ VD A F QMP + V WT +I G+++ + +A
Sbjct: 176 VFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++ + TIV +L+A A++GAL+LG I Y K+ +I NAL+DM
Sbjct: 236 LELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDM 295
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y K FTWTTMI + GNG KA+++F MLR+ I P+ V +
Sbjct: 296 YAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTF 355
Query: 172 VGVLSARTH 180
V VLSA +H
Sbjct: 356 VSVLSACSH 364
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 48/190 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD++P D + +T+++ +L+++ +A+++F S D F V L+A
Sbjct: 72 AGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGG 131
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF-------------------- 134
LG +G + I + + +++ NAL+DMYC+C KF
Sbjct: 132 LGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCG-KFEPARTVFDRMLVKDEVTWGS 190
Query: 135 ---------------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
+WT +I G +AL++F +ML +P+
Sbjct: 191 MLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPN 250
Query: 168 EVAYVGVLSA 177
+ VGVLSA
Sbjct: 251 HITIVGVLSA 260
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G + +G+ N ++I A++ Y + A F+++ +D WTTMI +
Sbjct: 269 LGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFT 328
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
R+A+ LF ++ S I+ + T VS+L+A ++ G ++ G
Sbjct: 329 VQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEG 371
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +M ++VI+ T+++SGY AR F +M ER+ V W +I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L+LF ++ ++ ++ +IL A A+L L LG ++ K+ K +DIF G
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +W MI+G A +G G++AL++F +ML + K
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEK 490
Query: 166 PDEVAYVGVLSARTH 180
PD + +GVLSA H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ ++ ++V+G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F + + +E++ S+L+A + L + G + + I K+ +D++ G+AL+D
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W ++I +G +ALD+F ML + ++PDEV
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 171 YVGVLSA 177
V+SA
Sbjct: 256 LASVISA 262
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 20/183 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y V+ A++ FD+M +R+ V W ++I + + EAL +FQ +
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCT-- 131
S + DE T+ S+++A A+L A+++G+ + + KN K++NDI NA +DMY KC+
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 132 --VKFTW-----------TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+F + T+MI G A++ + A MF++M ++ V++ +++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGY 361
Query: 179 THN 181
T N
Sbjct: 362 TQN 364
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ V+ F +M ERD V W MI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+E+ S D T++ +L+A + G +E G + + ++ F L D Y
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRD------FGVAPLRDHY 532
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T M+ L +G ++A M +M ++PD V + +L+A
Sbjct: 533 ---------TCMVDLLGRAGFLEEAKSMIEEM---PMQPDSVIWGSLLAA 570
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 112/191 (58%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD++++ I++ Y+ R ++ AR+ F+++P RD V W MI G++ +A
Sbjct: 201 LFDEMPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQA 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALID 125
L +F+E+ + DE T++S+L+A +LG LE+G+ + + I + + + + GNAL
Sbjct: 261 LEMFEEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALTY 320
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEV 169
MY KC TW ++IVGLA+ G+ ++++ +F +M R +IKP+E+
Sbjct: 321 MYAKCGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKPNEI 380
Query: 170 AYVGVLSARTH 180
+VGVL A +H
Sbjct: 381 TFVGVLVACSH 391
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A Q FDQ+ E D +W TM+ G + +A++L+ +++ I D+FT +L A
Sbjct: 63 IDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKA 122
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------TVK---FTW 136
L +G I K+ + + F N L+ + KC + K W
Sbjct: 123 CTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVVAW 182
Query: 137 TTMIVGLAISGNGDKALDMFSQM 159
+ + G A G A +F +M
Sbjct: 183 SALTAGYARRGELCMARRLFDEM 205
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ + ++SGY+ + AR+ FD MP R+ V WTT+I Y ++ + EA
Sbjct: 126 VFDQTTDKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEA 185
Query: 67 LTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ +F+ +Q I D ++S+L+A +LGA++LGEW+ ++ + + I NA+ID
Sbjct: 186 VEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIID 245
Query: 126 MYCK--CTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY K C K TWTT+I G A+ G G +A++MF +M ++ P++V
Sbjct: 246 MYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVT 305
Query: 171 YVGVLSARTH 180
++ +LSA +H
Sbjct: 306 FLAILSACSH 315
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI+ Y+ V A + F+ M ++ V WTT+I G+ EA+ +F+ ++ N+
Sbjct: 242 AIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAP 301
Query: 81 DEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDM 126
++ T ++IL+A +++G +LG W K + + ++K + ++D+
Sbjct: 302 NDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDL 348
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V+S+TA++SGY Q+ A F++MPERD W +I GY + F EA
Sbjct: 213 LFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEA 272
Query: 67 LTLFQEIQTSNIMG-------DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
L+LF+ + ++ T V L+A + G L LG+WI Y+ +N + D F
Sbjct: 273 LSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFV 332
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR--A 162
NAL+DMY KC +W +MI LA+ G A+ +F +M+ +
Sbjct: 333 SNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGS 392
Query: 163 SIKPDEVAYVGVLSARTH 180
+KPDEV ++G+L+A TH
Sbjct: 393 GVKPDEVTFIGLLNACTH 410
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 17/188 (9%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ ++VI A++ Y+ + A F++MP+RD V WTTMI GY + EA+ +
Sbjct: 190 TLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRV 249
Query: 70 FQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFAGNALIDMY 127
FQ + + +E T+V++L+A +++ AL LG+W+ +YI+ ++ V D GNALI+MY
Sbjct: 250 FQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMY 309
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +W+T+I GLA++G G +A +FS ML + PD++ ++
Sbjct: 310 VKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFL 369
Query: 173 GVLSARTH 180
G+LSA +H
Sbjct: 370 GLLSACSH 377
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +++ YI V A FD +P+ D V WT++I G ++ +EAL+ F +
Sbjct: 97 DIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM- 155
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
N+ + T+V+ L+A ++L L+LG+ I + + ++ NAL+D Y +C
Sbjct: 156 --NVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLR 213
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+WTTMI G A SG ++A+ +F M+ P+E V VLSA
Sbjct: 214 SAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSA 272
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ +M + +S+ +++ YI + AR+ F++MPERD V W ++I GY+ V ++ A
Sbjct: 201 LLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGA 260
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++ NI E T +SIL A A LGALE+G+ I + + + + + GNA++DM
Sbjct: 261 LDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDM 320
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEV 169
Y KC W MI+GLA+ G+ ++AL+MF M KP+ +
Sbjct: 321 YAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRI 380
Query: 170 AYVGVLSARTH 180
++ +L A +H
Sbjct: 381 TFIALLIACSH 391
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D S+ ++++GY+ V+ A F MP++D V W+TMI G ++ N+ ALT+F ++
Sbjct: 331 DQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMR 390
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ DE TIVS+++A NL ALE G+ + Y+ +NK + G +LIDMY KC
Sbjct: 391 AQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLE 450
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSAR 178
W +IVGLA++G K+L++FS+M +S P+E+ + GVLSA
Sbjct: 451 AAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSAC 510
Query: 179 TH 180
H
Sbjct: 511 RH 512
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 46/220 (20%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ + +++VS + R V+ AR FD+ RD WT MI + R + F EA
Sbjct: 191 VFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEA 250
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F ++ DE +VS++ A A + GE + + + + + N LI M
Sbjct: 251 LHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHM 310
Query: 127 YC---------------KCTVKFTWTTMIVGLAISGNGDKALDMFSQM------------ 159
Y C +F+W +MI G +G+ + A+ +FS M
Sbjct: 311 YSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMI 370
Query: 160 ------------------LRAS-IKPDEVAYVGVLSARTH 180
+RA ++PDEV V V+SA T+
Sbjct: 371 SGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTN 410
Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 24/143 (16%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD P D V W T++ Y+ +A+ +F + N ++VS+ R
Sbjct: 157 ARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVS-SMVSLFGRRG- 214
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
+ E + D+ +C FTWT MI + +AL
Sbjct: 215 -----MVEEARGVFDE-----------------AECRDIFTWTAMISCFERNDMFAEALH 252
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
MFS M R DE V V++A
Sbjct: 253 MFSCMRREMWPVDEALMVSVVAA 275
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY +R ++ A++ FD++P +D V W MI GY +++
Sbjct: 131 KVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKK 190
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+ ++++A A G++ELG + ++I+ + +++ NALID
Sbjct: 191 ALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALID 250
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC T W T+I G +AL +F +MLR+ P++V
Sbjct: 251 LYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 310
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 311 MLSILPACAH 320
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 20/181 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +V+ A + + + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKN----KVKNDIFAGNALIDMYCKC------ 130
++ T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 307 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366
Query: 131 -----TVKF-----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ F TW MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H
Sbjct: 367 PQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 426
Query: 181 N 181
+
Sbjct: 427 S 427
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 21/198 (10%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ +F M KD +++ +++G + +++D AR+ FD+ E+D V W MI GY+
Sbjct: 163 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 222
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAG-- 120
+EAL +F+E++ + D TI+S+L+A A LG LE G+ + YI + V + I+ G
Sbjct: 223 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 282
Query: 121 --NALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NALIDMY KC VK TW T+IVGLA+ + + +++MF +M R
Sbjct: 283 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 341
Query: 164 IKPDEVAYVGVLSARTHN 181
+ P+EV ++GV+ A +H+
Sbjct: 342 VWPNEVTFIGVILACSHS 359
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 109/196 (55%), Gaps = 21/196 (10%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ ++F M +KD ++ +++ Y + A + F+ MPE+D V W ++I+G+
Sbjct: 31 LNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFELMPEKDIVAWNSVINGFALN 85
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EALTL++ + + + D FT+VS+L+A A L L LG Y+ K + ++ A
Sbjct: 86 GKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHAN 145
Query: 121 NALIDMYCKC-TVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NAL+D+Y KC T+ +WT++IVGLA++G G +AL+ F M R +
Sbjct: 146 NALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGL 205
Query: 165 KPDEVAYVGVLSARTH 180
P E+ +VGVL A +H
Sbjct: 206 VPSEITFVGVLYACSH 221
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRF-REALTLF 70
NK++ + A++ Y + AR+ FD+M ER+ V WT++I G L VN F +EAL F
Sbjct: 139 NKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVG-LAVNGFGKEALEHF 197
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
++++ ++ E T V +L A ++ G + G E+ K ++ + I ++D+
Sbjct: 198 KDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDL 254
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V T+++ Y+ ++ A F MPE+D V W+TMI GY ++AL LF ++
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
Q+ N+ D +T+V +L+A A LGAL+LG W + +D+N+ ++ G ALIDMY KC
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ W M+VGL+++G+ +FS + + I+PDE ++G+L
Sbjct: 368 TQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 179 TH 180
TH
Sbjct: 428 TH 429
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV T+++S Y+ + D A + FD +P+++ V WT +I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ + D F++V +L A A LG GEWI YI + + ++F +L+DMY KC
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 131 ----TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ F +W+TMI G A +G +ALD+F QM ++KPD VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
++ F Q+ E + LW TMI G + + F +A+ L+ ++ + + FTI +L A A
Sbjct: 67 SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK----------FTWTTM 139
+ LG I + + K +D+F +L+ +Y KC +K +WT +
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G SG+ +A+ F ++L +KPD + V VL+A
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V T+++ Y+ ++ A F MPE+D V W+TMI GY ++AL LF ++
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
Q+ N+ D +T+V +L+A A LGAL+LG W + +D+N+ ++ G ALIDMY KC
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ W M+VGL+++G+ +FS + + I+PDE ++G+L
Sbjct: 368 TQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 179 TH 180
TH
Sbjct: 428 TH 429
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV T+++S Y+ + D A + FD +P+++ V WT +I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ + D F++V +L A A LG GEWI YI + + ++F +L+DMY KC
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 131 ----TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ F +W+TMI G A +G +ALD+F QM ++KPD VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
++ F Q+ E + LW TMI G + + F +A+ L+ ++ + + FTI +L A A
Sbjct: 67 SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK----------FTWTTM 139
+ LG I + + K +D+F +L+ +Y KC +K +WT +
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G SG+ +A+ F ++L +KPD + V VL+A
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA 224
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++F M + ++Y ++SG + V A + FD MP D V WT +IDG ++ R
Sbjct: 123 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 182
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F+ + + D T++++++A A +GAL LG W+ + + ++ ++ N+
Sbjct: 183 HDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 242
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C +W +MIVG A +G A++ F M R KPD
Sbjct: 243 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 302
Query: 168 EVAYVGVLSARTHN 181
V + GVL+A +H
Sbjct: 303 AVTFTGVLTACSHG 316
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++V +++ Y QV++ARQ F M +R V W +MI G+ R +A+ F+
Sbjct: 234 ERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEA 293
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ D T +LTA ++ G + G Y D + + I A ++ Y C V
Sbjct: 294 MRREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGI---AARMEHY-GCVV 346
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L SG ++A+ + + M ++P+EV +L+ R H
Sbjct: 347 DL--------LGRSGRLEEAMRVVTTM---PMRPNEVVLGALLAGCRMHG 385
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 21/198 (10%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ +F M KD +++ +++G + +++D AR+ FD+ E+D V W MI GY+
Sbjct: 197 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAG-- 120
+EAL +F+E++ + D TI+S+L+A A LG LE G+ + YI + V + I+ G
Sbjct: 257 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 121 --NALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NALIDMY KC VK TW T+IVGLA+ + + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 375
Query: 164 IKPDEVAYVGVLSARTHN 181
+ P+EV ++GV+ A +H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 108/189 (57%), Gaps = 16/189 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+VIS+T+++ Y + + ++ AR F+ MP+R+ V W +MI Y + +F E+
Sbjct: 184 LFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVES 243
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++Q+ + D +T VS+L+A +NLG LE G++I Y+ + ++++ G AL +M
Sbjct: 244 LNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGTALTEM 302
Query: 127 YCKCT---------VK------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C +K F W +I LA+ G ++A+ +F M + +KP++ +
Sbjct: 303 YAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTF 362
Query: 172 VGVLSARTH 180
L A +H
Sbjct: 363 TSALFACSH 371
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + +IF M + V + ++ Y+N V AR+ FD MPERD V W +MI GY +
Sbjct: 116 LDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKG 175
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A LF+++ N++ + S++ A A+ LE +++ + +N +
Sbjct: 176 GKVANARGLFEKMPEKNVI----SWTSMIGAYADTDDLETA---RSFFETMPQRNVV--- 225
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI A G ++L++F QM + PD +V VLSA
Sbjct: 226 --------------SWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSA 268
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G + +V+ TA+ Y VD A F ++ +RD W +I R EA+
Sbjct: 286 GDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIK 345
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMY 127
+F ++ + + ++FT S L A ++ G +E G I ++K+ K+ I LIDM
Sbjct: 346 IFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDML 405
Query: 128 CK 129
C+
Sbjct: 406 CR 407
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 32 VDIARQCFDQM---PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
+D + F QM + V+W MI GY F+E + +F E+ + FT +
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148
+ + L G+ + I K+ ++ N+L +MY K F VGLA +
Sbjct: 61 INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFD-----VGLASNCK 115
Query: 149 GDKALDMFSQMLRASIKPDEV 169
D A +F M ++P E+
Sbjct: 116 LDYARKIFDDM---CVRPVEL 133
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D+IS+ A++SGY+N ++++ A F +MPER+ + WT MI G + E
Sbjct: 348 VFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEG 407
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF ++++ + ++ +TA + LG+L+ G+ I + + + + + AGNALI M
Sbjct: 408 LKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITM 467
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y +C V +W MI LA G+G KA+++F QM++ I PD + +
Sbjct: 468 YSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITF 527
Query: 172 VGVLSARTH 180
+ +L+A H
Sbjct: 528 LTILTACNH 536
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 54/214 (25%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S+T +++GY+ + + AR+ D + V W MI GY+R + EA F+ + +
Sbjct: 219 SWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG 278
Query: 78 IMGDEFTIVSILTA----RANLGALELGEWIKTYIDKNKVKND----IFAGNALIDMYC- 128
I DE+T S+++A +G G + YI + V+ + NALI Y
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTK 338
Query: 129 ------------KCTVK---------------------------------FTWTTMIVGL 143
K V+ TWT MI GL
Sbjct: 339 YDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGL 398
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
A +G G++ L +F+QM ++P + A+ G ++A
Sbjct: 399 AQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITA 432
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRV 60
+ ++F + D+++ T ++S Y + V +A+Q F+ P RD V + MI Y
Sbjct: 58 YARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHG 117
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
N AL LF +++ + D FT S+L+A
Sbjct: 118 NDGHAALNLFVQMKRYGFLPDPFTFSSVLSA 148
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y V+ A F MP D V W MI + +A+ LF+++ +I+
Sbjct: 463 ALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILP 522
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKC------ 130
D T ++ILTA + G ++ G + Y D + I G LID+ C+
Sbjct: 523 DRITFLTILTACNHAGLIKEG---RHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKA 579
Query: 131 -----TVKFT-----WTTMIVGLAISGN-------GDKALDM----------FSQMLRAS 163
++ F W ++ G I GN D+ L++ S M A
Sbjct: 580 QSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAAL 639
Query: 164 IKPDEVAYVGVL 175
+ DEVA V +L
Sbjct: 640 GQWDEVARVRLL 651
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 17/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V + A+++G +D A + F MP R+ V WTTMI GY ++ +
Sbjct: 103 KLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDK 162
Query: 66 ALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF + Q IM + T+VSIL A ANL ALE+G+ ++ Y KN + +A NA++
Sbjct: 163 ALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVL 222
Query: 125 DMYCKC--------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+MY KC +++ +W +M+VGLA+ G KAL+++ QML PD+
Sbjct: 223 EMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDD 282
Query: 169 VAYVGVLSART 179
V +VG+L A T
Sbjct: 283 VTFVGLLLACT 293
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 49 LWTTMIDGYLRVNRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
L+ +I Y + + +L+ +I+ + ++ T + +A +L + LG+ + T+
Sbjct: 13 LYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTH 72
Query: 108 IDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKA 152
K+ + D+FA AL+DMY K W M+ GLA G+ D A
Sbjct: 73 FIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGA 132
Query: 153 LDMFSQMLRASIKP 166
L++F M ++ P
Sbjct: 133 LELFXSMPSRNVVP 146
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 55/226 (24%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W TMIDGY ++ +A
Sbjct: 247 LFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQA 306
Query: 67 LTLFQEI--------------------------------QTSNIMGDEFTIVSILTARAN 94
TLF ++ + S++ DE T+V +L+A A
Sbjct: 307 KTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQ 366
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKC-TVKFT-------------- 135
LG L + YI V+ F G ALIDMY KC +++
Sbjct: 367 LGRLSKAMDMHLYI----VEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDH 422
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W MI GLAI G G+ A DM Q+ R SIKPD++ +VGVL+A +H+
Sbjct: 423 WNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHS 468
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 6 EIFGTMKN--KDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M K++IS+ +I+SGY + VDIA F +MPE+D + W +MIDGY++ R
Sbjct: 212 ELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGR 271
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A LF + +++ T +++ A LG + KT D+ ++ +
Sbjct: 272 IEDAKDLFDAMPRRDVV----TWATMIDGYAKLGFVHQA---KTLFDQMPHRDVV----- 319
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
++ +M+ G + +AL++FS M + S + PDE V VLSA
Sbjct: 320 ------------SYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSA 363
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 1 MGFT---LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTM 53
+GF L+I G ++ D+ ++ Y+ + ARQ FD+MP+RD V + +M
Sbjct: 138 LGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSM 197
Query: 54 IDGYLRVNRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNK 112
IDGY++ A LF ++M E ++S + + G I + +
Sbjct: 198 IDGYVKRGLIESARELF------DLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEM 251
Query: 113 VKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFS 157
+ D+ + N++ID Y K TW TMI G A G +A +F
Sbjct: 252 PEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFD 311
Query: 158 QMLRASIKPDEVAYVGVLSARTHN 181
QM D V+Y +++ N
Sbjct: 312 QMPHR----DVVSYNSMMAGYVQN 331
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + ++AL LF + + + D+F++ +L A + LG ++ G I
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGD 150
+ K + +D+F N LI +Y KC ++ +MI G G +
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIE 208
Query: 151 KALDMFSQMLR 161
A ++F M R
Sbjct: 209 SARELFDLMPR 219
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A+V Y ++ AR FD+M RD V WT+MI GY E L F
Sbjct: 850 SNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDL 909
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+++S ++ + +I+S+L A NLGAL GEW +Y+ + + DI A++DMY KC
Sbjct: 910 MRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 969
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI I G+G KA+D+F QM++A ++P V + VLSA
Sbjct: 970 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 1029
Query: 178 RTHN 181
+H+
Sbjct: 1030 CSHS 1033
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y+ D A F ++P++D V W ++ GY + +++ +F+ + + I
Sbjct: 346 TALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQ 405
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF 134
D +V IL A + LG + + Y+ ++ +++F G +LI++Y KC VK
Sbjct: 406 PDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKL 465
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
W++MI I G G +AL++F QM++ S ++P+ V ++ +LSA +H
Sbjct: 466 FKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F T D T + S Y + AR+ FD+ P + LW + + Y R ++ E
Sbjct: 26 QVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEE 85
Query: 66 ALTLFQ-EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNAL 123
L LF I T+ D FTI L A A L LELG+ I + KN ++ +D+F G+AL
Sbjct: 86 TLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSAL 145
Query: 124 IDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPD 167
+++Y KC WT+M+ G + + ++AL +FSQM + + D
Sbjct: 146 VELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLD 205
Query: 168 EVAYVGVLSA 177
V V V+SA
Sbjct: 206 PVTLVSVVSA 215
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
IA F +MPE+D + W+TMI Y EAL LF E+ + T+VS L A A
Sbjct: 259 IAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA 318
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTT 138
LE G+ I + D ALIDMY KC+ +W
Sbjct: 319 VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVA 378
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
++ G A +G K++ +F ML I+PD VA V +L+A +
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASS 419
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
+G + +++ AI+ Y++ ++D A F+ +P LW MI G+ RF +L
Sbjct: 746 YGLQYDSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSL 803
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ ++ + D+F L + A L L+ G+ I ++ ND+F AL+DMY
Sbjct: 804 ELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMY 863
Query: 128 CKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC V+ +WT+MI G A +G + L F M + + P+ V+ +
Sbjct: 864 AKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSIL 923
Query: 173 GVLSA 177
VL A
Sbjct: 924 SVLLA 928
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QEI 73
D+ +A+V Y Q+ A + F++ D VLWT+M+ GY + N EAL LF Q +
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ D T+VS+++A A L ++ G + + + + D+ N+L+++Y K +
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+TMI A + ++AL++F +M+ +P+ V V L A
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 316
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++ TAI+ Y +D+AR FD+ +D V W+ MI Y R+A+ LF ++
Sbjct: 953 DILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMV 1012
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE-----WIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ + T +L+A ++ G LE G+ + ++ K+ N
Sbjct: 1013 KAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN-------------- 1058
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+ M+ L +G +A+D+ M ++PD + +L A R HN
Sbjct: 1059 ------YACMVDLLGRAGQLSEAVDLIENM---PVEPDASIWGSLLGACRIHN 1102
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-Q 71
N +V +++ Y + A + F M RD V+W++MI Y R EAL +F Q
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 499
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
++ S + + T +SIL+A ++ G +E G
Sbjct: 500 MVKNSTVRPNNVTFLSILSACSHAGLVEEG 529
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++F M + ++Y ++SG + V A + FD MP D V WT +IDG ++ R
Sbjct: 68 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 127
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F+ + + D T++++++A A +GAL LG W+ + + ++ ++ N+
Sbjct: 128 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 187
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C +W +MIVG A +G A++ F M R KPD
Sbjct: 188 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 247
Query: 168 EVAYVGVLSARTHN 181
V + GVL+A +H
Sbjct: 248 AVTFTGVLTACSHG 261
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++V +++ Y QV++ARQ F M +R V W +MI G+ R +A+ F+
Sbjct: 179 ERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEA 238
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ D T +LTA ++ G + G Y D + + I A ++ Y C V
Sbjct: 239 MRREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGI---AARMEHY-GCVV 291
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L SG ++A+ + + M ++P+EV +L+ R H
Sbjct: 292 DL--------LGRSGQLEEAMRVVTTM---PMRPNEVVLGALLAGCRMHG 330
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L++F M + ++Y ++SG + V A + FD MP D V WT +IDG ++ R
Sbjct: 157 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 216
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ F+ + + D T++++++A A +GAL LG W+ + + ++ ++ N+
Sbjct: 217 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 276
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY +C +W +MIVG A +G A++ F M R KPD
Sbjct: 277 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 336
Query: 168 EVAYVGVLSARTHN 181
V + GVL+A +H
Sbjct: 337 AVTFTGVLTACSHG 350
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V +++ Y QV++ARQ F M +R V W +MI G+ R +A+ F+ +
Sbjct: 269 RNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 328
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ D T +LTA ++ G + G Y D + + I A ++ Y C V
Sbjct: 329 RREGFKPDAVTFTGVLTACSHGGLTDEG---LRYYDLMRAEYGI---AARMEHY-GCVVD 381
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L SG ++A+ + + M ++P+EV +L+ R H
Sbjct: 382 L--------LGRSGQLEEAMRVVTTM---PMRPNEVVLGALLAGCRMHG 419
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +++ AR+ FD+ PE+ W MI GY + +A++LF+E+Q S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ TI IL+A A LGAL LG+W+ + ++ I+ ALI MY KC
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TW TMI G + G+G +AL +FS+ML + I P V ++ VL A +H
Sbjct: 478 FDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSH 533
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMG 80
IV Y +V+ AR+ FD+MPE+D +LW TMI GY + + E++ +F++ I S
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF----- 134
D T++ IL A A L L LG I + K + + I +Y KC +K
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLF 279
Query: 135 ---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ MI G +G + +L +F +++ + K V ++ H
Sbjct: 280 REFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGH 334
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + AR+ FD MP+++ V W TMI GY +EALT+F E+ S I
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIA 518
Query: 80 GDEFTIVSILTARANLGALELGEWI 104
T + +L A ++ G ++ G+ I
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGDEI 543
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 18/173 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +S Y ++ +A F + D V + MI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------- 131
T+VS++ G L L I Y K+ + AL +Y K
Sbjct: 320 LKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376
Query: 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G +G + A+ +F +M + P+ V +LSA
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + D S+ ++++GY+ V A F MP +D V W+T+I G ++ N+ +A
Sbjct: 323 LFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDA 382
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LT+F +Q I DE TIVS+++A NL ALE G+ + YI +N+ + G +LI+M
Sbjct: 383 LTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINM 442
Query: 127 YCKCTV-------------KFT--WTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 170
Y KC K T W +IVGLA++G K+LDMFS+M + + P+E+
Sbjct: 443 YMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEIT 502
Query: 171 YVGVLSARTH 180
+ GVLSA H
Sbjct: 503 FTGVLSACRH 512
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 46/222 (20%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+E+F M ++ + +++VS + R VD AR+ FD RD WT MI + R + F
Sbjct: 189 VEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFA 248
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL +F ++ DE +VS+++A A ++ G+ + + + + + NALI
Sbjct: 249 EALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALI 308
Query: 125 DMYCKCTVKF----------------------------------------------TWTT 138
MY C F +W+T
Sbjct: 309 HMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWST 368
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+I G + AL +F M I+PDEV V V+SA T+
Sbjct: 369 VISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTN 410
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+ + ++ G+ VD F QM ER V W T+I + R E
Sbjct: 163 KMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVE 222
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALI 124
AL LFQ+++ DE T+V++L + LGALE+G+ I +Y K + GN+LI
Sbjct: 223 ALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLI 282
Query: 125 DMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D YCKC T K +W T+I+G A++G G+ A+D+F +M + +KP++
Sbjct: 283 DFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDA 342
Query: 170 AYVGVLSARTHN 181
+V VL+A H+
Sbjct: 343 TFVAVLTACVHS 354
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 48/214 (22%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G ++ ++++ V NR + A + F Q + L+ ++I + F ++L
Sbjct: 36 GLHQSNQILAHFISVCASFNR--IAYADRLFSQSHNPNIFLFNSIIKAHSLSVPFHQSLL 93
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEW--------------------IKTYI 108
LF ++ I+ D++T +L + ANL LG+ ++ Y+
Sbjct: 94 LFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYV 153
Query: 109 DKNKVKN-----------DIFAGNALIDMYCK--------CTVK-------FTWTTMIVG 142
K+++ D+ N +I +CK C + +W T+I
Sbjct: 154 CCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISC 213
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
LA + +AL++F QM KPDEV V +L
Sbjct: 214 LAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLP 247
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+++ Y ++ A F +M + V W T+I G+ + A+ LF E++ +
Sbjct: 280 SLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKP 339
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
++ T V++LTA + G LE G E + + +++ + ++D+
Sbjct: 340 NDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDL------------- 386
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L G ++A + M ++P+ + VL A RTH
Sbjct: 387 ---LGRGGCVEEAHKLIKSM---PMQPNATLWGAVLGACRTH 422
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV----- 60
++F M KD+IS+ +++ GY+ +++ A+ FD +P RD V W TMIDGY ++
Sbjct: 208 KLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQ 267
Query: 61 -------------------------NRFR-EALTLFQEIQT-SNIMGDEFTIVSILTARA 93
NRF EAL +F +++ S++ DE T+V +L+A A
Sbjct: 268 AKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIA 327
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + G ALIDMY KC +++ W
Sbjct: 328 QLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 387
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLAI G G+ A DM Q+ R SIKPD++ +VGVL+A +H+
Sbjct: 388 MIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHS 430
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 28/176 (15%)
Query: 6 EIFGTMKN--KDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M K++IS+ +++SGY E VDIA + F +MPE+D + W +MIDGY++ R
Sbjct: 174 ELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGR 233
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A LF + +++ T +++ A LG + KT D+ + D+ A N+
Sbjct: 234 IEDAKDLFDMVPRRDVV----TWATMIDGYAKLGFVHQA---KTLFDQMPHR-DVVAYNS 285
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
++ Y + +AL++FS M + S + PDE V VLSA
Sbjct: 286 MMAGYVQNRFHM----------------EALEIFSDMEKESHLSPDETTLVIVLSA 325
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW MI + R AL LF + + D+F++ ++ A + LG ++ G I
Sbjct: 51 DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGD 150
++ K + +D+F N LI +Y KC ++ +MI G G+ +
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170
Query: 151 KALDMFSQMLR 161
A ++F M R
Sbjct: 171 SASELFDLMPR 181
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++ ++++++SGY + V AR FD++P R+ V W ++I GY + E
Sbjct: 245 EVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEE 304
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F ++Q DE TI S+L+A + LG L+ G+ I ++ +K + F N L+D
Sbjct: 305 ALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVD 364
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC + W +MI G AI G +AL+ F +M + PDE+
Sbjct: 365 MYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEIT 424
Query: 171 YVGVLSARTH 180
++ VLSA H
Sbjct: 425 FLSVLSACAH 434
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ A++ GY+ A F++M R V W MIDG+ R
Sbjct: 150 KVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTET 209
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A F ++ + + + T ++ A +E + + + + FA +++I
Sbjct: 210 ARRFFDDVPSE--LRNVVTWTVMVDGYARNAEMEAAR----EVFEGMPQRNFFAWSSMIS 263
Query: 126 MYC-KCTVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
YC K VK W ++I G A +G ++AL+ F +M +PDEV
Sbjct: 264 GYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVT 323
Query: 171 YVGVLSA 177
VLSA
Sbjct: 324 IASVLSA 330
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+ M R+ W +MI G+ + +EAL F ++ S+ DE T +S+L+A A+
Sbjct: 375 ARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAH 434
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G + G I + ++K + I LID+ L +G +A D
Sbjct: 435 GGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDL----------------LGRAGRIKEAYD 478
Query: 155 MFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ +M +KP++V + +L A R H
Sbjct: 479 LIKRM---PVKPNDVVWGALLGACRVH 502
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNI--MGDEFTIVSILTARANLGALELGEWIKTY 107
W +I YL REAL ++ ++ + +G +L A A+L ++ G+ +
Sbjct: 63 WCHLIRSYLSQGAPREALLVYTGLRRKGVYLLG---VAPLVLKACASLSIVKHGKALHAE 119
Query: 108 IDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKA 152
KN V D+ G +L+ MY KC TW MI G +G+ A
Sbjct: 120 SIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSA 179
Query: 153 LDMFSQM 159
+ +F +M
Sbjct: 180 VLLFEKM 186
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G + ++F ++D+ S+ +++ Y+ + +A++ FD M ERD V W+T+I GY++V
Sbjct: 166 VGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQV 225
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F EAL F ++ +E+T+VS L A +NL AL+ G+WI YI K ++K +
Sbjct: 226 GCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLL 285
Query: 121 NALIDMYCKC-------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
++IDMY KC VK + W MI G A+ G ++A+++F QM I
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKI 345
Query: 165 KPDEVAYVGVLSARTH 180
P++V ++ +L+A +H
Sbjct: 346 SPNKVTFIALLNACSH 361
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 48/191 (25%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGY-LRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTAR 92
A + FDQ+P+ D ++ TMI + L + +L +F+ + Q + + ++ V +A
Sbjct: 66 AHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSAC 125
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWT 137
N ++ GE ++ + K ++N++F NALI MY K + ++W
Sbjct: 126 GNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWN 185
Query: 138 TMIVGLAISGNGD-------------------------------KALDMFSQMLRASIKP 166
T+I SGN +ALD F +ML+ KP
Sbjct: 186 TLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKP 245
Query: 167 DEVAYVGVLSA 177
+E V L+A
Sbjct: 246 NEYTLVSALAA 256
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 110/189 (58%), Gaps = 20/189 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+V+S+T ++ GY + AR FD E+D V W+ +I GY++ +A
Sbjct: 247 VFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQA 306
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK---NKVKNDIFAGNAL 123
L +F E++ N+ DEF +VS+++A A LG LEL +W+ +Y+ K + ++ + A AL
Sbjct: 307 LRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA--AL 364
Query: 124 IDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+DM KC +K + +MI GL+I G G++A+++F++ML + PDE
Sbjct: 365 LDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDE 424
Query: 169 VAYVGVLSA 177
VA+ +L+A
Sbjct: 425 VAFTVILTA 433
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A F ++ VLW T+I + + N F L+ F ++ + D FT S++ A +
Sbjct: 81 ASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSG 140
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
G+ + + V D++ G +LIDMY KC +WT M
Sbjct: 141 TCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAM 200
Query: 140 IVGLAISGNGDKALDMFSQM 159
+VG G+ +A +F +M
Sbjct: 201 LVGYVAVGDVVEARKLFDEM 220
Score = 43.9 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+ P RD VL+ +MI G R EA+ LF + + DE ILTA +
Sbjct: 377 ALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSR 436
Query: 95 LGALELG 101
G ++ G
Sbjct: 437 AGLVDEG 443
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y ++D+ARQ FD+ E+ W MI GY + A++LFQE+ T+
Sbjct: 344 TALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT 403
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+ TI SIL+A A LGAL G+ + I ++ +I+ ALIDMY KC
Sbjct: 404 PNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQL 463
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW TMI G + G GD+AL +F++ML +P V ++ VL A +H
Sbjct: 464 FDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSH 519
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y +V AR+ FD+MP+RD VLW TMI G +R + +++ +F+++ +
Sbjct: 142 SALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVR 201
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVKF- 134
D T+ ++L A A + +++G I+ K D + LI ++ KC T +
Sbjct: 202 LDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL 261
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
++ +I G + +G + A+ F ++L + + VG++ +
Sbjct: 262 FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSS 316
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 48/187 (25%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+FG ++ D++SY A++SG+ + + A V FRE
Sbjct: 261 LFGMIRKPDLVSYNALISGFSCNGETECA------------------------VKYFREL 296
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV------------- 113
L Q + +S T+V ++ + G L L I+ + K+
Sbjct: 297 LVSGQRVSSS-------TMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTI 349
Query: 114 ---KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
N+I L D + TV W MI G A SG + A+ +F +M+ P+ V
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVA-AWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVT 408
Query: 171 YVGVLSA 177
+LSA
Sbjct: 409 ITSILSA 415
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + A Q FD E++ V W TMI GY EAL LF E+
Sbjct: 445 TALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ 504
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T +S+L A ++ G + G+ +IF +A+++ Y + + M
Sbjct: 505 PSSVTFLSVLYACSHAGLVREGD-------------EIF--HAMVNKYRIEPLAEHYACM 549
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ L +G +KAL+ +M ++P + +L A
Sbjct: 550 VDILGRAGQLEKALEFIRKM---PVEPGPAVWGTLLGA 584
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 24/161 (14%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARA 93
AR F +P+ D L+ +I G+ + +++ + + + + + D FT ++A
Sbjct: 59 ARALFFSVPKPDIFLFNVLIKGF-SFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASP 117
Query: 94 --NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKFT--------------W 136
NLG + D N +F +AL+D+YCK + V + W
Sbjct: 118 DDNLGMCLHAHAVVDGFDSN-----LFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLW 172
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TMI GL + D ++ +F M+ ++ D VL A
Sbjct: 173 NTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPA 213
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + ++V+ Y +D + FD M RD V W M+ GY + EAL LF E++
Sbjct: 395 DVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR 454
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ N D TIVS+L A+ G L LG+WI +++ +N ++ I +L+DMYCKC
Sbjct: 455 SDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 514
Query: 131 TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T + +W+ +IVG G G+ AL +S+ L + +KP+ V ++ VLS+ +
Sbjct: 515 TAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCS 574
Query: 180 HN 181
HN
Sbjct: 575 HN 576
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y+ ++DIA + F++ ++D VLWT MI G ++ +AL +F+++ +
Sbjct: 299 TSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVK 358
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVK 133
T+ S++TA A LG+ LG I YI + ++ D+ N+L+ MY KC ++
Sbjct: 359 PSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIV 418
Query: 134 F---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F +W M+ G A +G +AL +F++M + PD + V +L
Sbjct: 419 FDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLL 469
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ +R+ FD M RD V W ++I Y ++ E L L + ++ T S+L+
Sbjct: 210 IEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSV 269
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC---KCTVKF------------TW 136
A+ G L+LG + I + D +LI +Y K + F W
Sbjct: 270 AASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLW 329
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T MI GL +G+ DKAL +F QML+ +KP V++A
Sbjct: 330 TAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITA 370
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 1 MGFTLE--IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G TL I + + D +++++ Y D+AR+ FD MPER+ V WTT+I Y
Sbjct: 79 LGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYS 138
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R R EA +LF E++ I T++S+L + L ++ +DI
Sbjct: 139 RTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYG---FMSDIN 195
Query: 119 AGNALIDMYCKC 130
N+++++Y KC
Sbjct: 196 LSNSMLNVYGKC 207
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y +D A++CF+QMP D V W+ +I GY + AL + + S +
Sbjct: 501 TSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMK 560
Query: 80 GDEFTIVSILTARANLGALELG 101
+ +S+L++ ++ G +E G
Sbjct: 561 PNHVIFLSVLSSCSHNGLVEQG 582
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+ L + + +++ D +T S+L A + L LG + I + + D + ++L
Sbjct: 43 HQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGLSLDAYIASSL 102
Query: 124 IDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I+ Y K WTT+I + +G +A +F +M R I+P
Sbjct: 103 INFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSS 162
Query: 169 VAYVGVL 175
V + +L
Sbjct: 163 VTVLSLL 169
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+++S+ ++V G + +ARQ FD MP+RD + W+++IDGY++ + +A
Sbjct: 171 VFDGMPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDA 230
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +F +++ S +E T+VS+L A A+LGAL+ G + Y+ NK+ + +L+DM
Sbjct: 231 MVVFDKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDM 290
Query: 127 YCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC + W MI GLA G ++LD+F +M +KPDE+
Sbjct: 291 YAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEI 350
Query: 170 AYVGVLSARTH 180
Y+ +L A H
Sbjct: 351 TYLSLLHACAH 361
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 46/177 (25%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
W T+I GY + ++++F ++ + D T ++ A A L ELG I +I
Sbjct: 82 WNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHII 141
Query: 110 KNKVKNDIFAGNALIDMY-------------------------------CKCTVK----- 133
K+ ++D F N+L+ MY KC
Sbjct: 142 KHGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLARQ 201
Query: 134 ----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W+++I G +G+ A+ +F +M + KP+EV V VL A H
Sbjct: 202 LFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAH 258
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
T++V Y ++ A F +P D +LW MI G +E+L LF+E+
Sbjct: 285 TSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVG 344
Query: 78 IMGDEFTIVSILTARANLGALE 99
+ DE T +S+L A A+ G ++
Sbjct: 345 VKPDEITYLSLLHACAHGGLVK 366
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 15/165 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +VD AR+ FDQM RD V W+ MI GY + R +EA+ LF E+Q +N+
Sbjct: 266 TALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLD 325
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+E T+VS+L+ A LGAL G+WI YI + + + G AL+D Y KC
Sbjct: 326 PNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKCGLVDSAIEV 385
Query: 131 ----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
VK ++WT +I GLA +G G +AL+ + M ++++P++V
Sbjct: 386 FQLMPVKNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPNDV 430
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 15/177 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+ I ++ Y N +++IAR FD M ERD W +M GY++ + + + LF+E++
Sbjct: 160 NCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYEDTVRLFEEMR 219
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ ++ T++S+L A L +ELGEWI Y+ N + ++ AL+DMY KC
Sbjct: 220 ELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVDMYAKCGEVD 279
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
W+ MI G + + +A+D+F++M A++ P+EV V VLS
Sbjct: 280 KARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLDPNEVTMVSVLS 336
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 21/182 (11%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S+ A+++ + + + AR+ FD MPERD V W+TMI GY++ R AL LF + ++
Sbjct: 345 SWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYSMLNTS 404
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK--NDIFAGNALIDMYCK------ 129
+ +E T+ S L+A A+ G L+ G+WI +I ++ +++ AG LIDMY K
Sbjct: 405 VEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTDNLSAG--LIDMYAKRGSVAD 462
Query: 130 -------CTVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ KF+ W MI LAI G +LD+FSQ+ R SIKP+ + ++GVLSA
Sbjct: 463 AVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSAC 522
Query: 179 TH 180
H
Sbjct: 523 CH 524
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 47/218 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +++ +++ A+++GY+ E +D+A + F ++PERD V W T+IDGY+ + +A
Sbjct: 201 MFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDA 260
Query: 67 LTLF-QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ + Q + E +V ++ A A A+ G+ + T I KN F L+
Sbjct: 261 MKAYVQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVH 320
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y C + +W+TM
Sbjct: 321 FYGCCGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTM 380
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G +G D AL++F ML S++P+EV LSA
Sbjct: 381 ISGYVQTGRSDMALELFYSMLNTSVEPNEVTLASALSA 418
Score = 42.4 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQ 71
+D + ++++ +D A++ D+MP RD V +TT++ R A+ +F+
Sbjct: 74 RDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTALARAGHAGRAVAVFR 133
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ + N++ +E T+ + A A GA I + K + + L+ Y
Sbjct: 134 GMLSENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALDGFVIVATNLVHAYAGVL 193
Query: 132 VKFTWTTMIVGL----AISGNG-------DKALDMFSQMLRASIKPDEVAYVGVL 175
++ M G+ A++ N + +DM +++ + DEV+++ ++
Sbjct: 194 ELYSARAMFDGMTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTLI 248
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++ ++++++SGY + V AR FD++P R+ V W ++I GY + E
Sbjct: 116 EVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEE 175
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F ++Q DE TI S+L+A + LG L+ G+ I ++ +K + F N L+D
Sbjct: 176 ALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVD 235
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC + W +MI G AI G +AL+ F +M + PDE+
Sbjct: 236 MYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEIT 295
Query: 171 YVGVLSARTH 180
++ VLSA H
Sbjct: 296 FLSVLSACAH 305
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ A++ GY+ A F++M R V W MIDG+ R
Sbjct: 21 KVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTET 80
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A F ++ + + + T ++ A +E + + + + FA +++I
Sbjct: 81 ARRFFDDVPSE--LRNVVTWTVMVDGYARNAEMEAAR----EVFEGMPQRNFFAWSSMIS 134
Query: 126 MYC-KCTVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
YC K VK W ++I G A +G ++AL+ F +M +PDEV
Sbjct: 135 GYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVT 194
Query: 171 YVGVLSA 177
VLSA
Sbjct: 195 IASVLSA 201
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+ M R+ W +MI G+ + +EAL F ++ S+ DE T +S+L+A A+
Sbjct: 246 ARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAH 305
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G + G I + ++K + I LID+ L +G +A D
Sbjct: 306 GGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDL----------------LGRAGRIKEAYD 349
Query: 155 MFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ +M +KP++V + +L A R H
Sbjct: 350 LIKRM---PVKPNDVVWGALLGACRVH 373
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 16/156 (10%)
Query: 41 QMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99
+MP +++ V W TM+ + R EAL LFQE+Q + + D+ T V+ L A A LGAL+
Sbjct: 199 RMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALD 258
Query: 100 LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLA 144
G W+ Y+ + D GNAL+DMY KC +T+T+MI+GLA
Sbjct: 259 TGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLA 318
Query: 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ G G+ AL +F+ M RA + P+EV +GVL+A H
Sbjct: 319 MHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCH 354
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 22 IVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
+V Y+ R ++ AR D P RD V T M+ G+ R EA+ LF M
Sbjct: 91 LVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLF------FAMA 144
Query: 81 DEFTIVSILT---------ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
D+ +V AR +G L LG + + KV D+ A NAL+DM +
Sbjct: 145 DDRCVVHRRPSPPPRRSRRAR-QIGDLALGREAHRRVAERKVAMDVVAWNALVDM--RMP 201
Query: 132 VK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +W TM+ A +G ++AL +F +M A+++PD+ +V L A
Sbjct: 202 VKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGA 250
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ D + A++ Y VD A + FD M RD +T+MI G R +AL+LF
Sbjct: 272 HSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFA 331
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
+Q + + +E T++ +LTA + G +E G
Sbjct: 332 GMQRAGVTPNEVTLLGVLTACCHAGLVEEG 361
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 16/183 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++ +++ A++S Y +D AR+ F+ MP R+ V W +MI GY + + A+ LF+E+
Sbjct: 325 RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 384
Query: 74 QTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
T+ + DE T+VS+++A +LGALELG W+ ++ +N++K I NA+I MY +C
Sbjct: 385 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 444
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ T+I G A G+G +A+++ S M I+PD V ++GVL+A
Sbjct: 445 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 504
Query: 178 RTH 180
+H
Sbjct: 505 CSH 507
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 48/222 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++VI++TA+V+GY + ++ AR+ FD MPER V W M+ GY + E
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEV 244
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + I DE T V++++A ++ G L + + + +++ + F AL+DM
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDM 304
Query: 127 YCKC------------------TVKF-----------------------------TWTTM 139
Y KC +V + TW +M
Sbjct: 305 YAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSM 364
Query: 140 IVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
I G A +G A+++F +M+ A + PDEV V V+SA H
Sbjct: 365 IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 406
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+GF + D A++ Y + AR+ FD++P ER W M+ GY
Sbjct: 115 IGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYW 174
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ +A LF + N++ T +++T A + LE + Y D ++ +
Sbjct: 175 KWESEGQAQWLFDVMPERNVI----TWTAMVTGYAKVKDLEAA---RRYFDCMPERSVV- 226
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W M+ G A +G ++ L +F +M+ A I+PDE +V V+SA
Sbjct: 227 ----------------SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISA 269
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ + A++ Y ++ A++ F +M RD V + T+I G+ EA+ L ++
Sbjct: 429 ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 488
Query: 76 SNIMGDEFTIVSILTARANLGALELG 101
I D T + +LTA ++ G LE G
Sbjct: 489 GGIEPDRVTFIGVLTACSHAGLLEEG 514
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 106/189 (56%), Gaps = 16/189 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V+++ A+++ Y+ VD A F +MPE++ + WTT+I+GY+R+ + EA
Sbjct: 142 LFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEA 201
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L ++ N D+ T L++ A+L AL++G+ + + K+ D+F NALI M
Sbjct: 202 RQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITM 260
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +W ++I A++GNG +AL +F +M + PDEV +
Sbjct: 261 YAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTF 320
Query: 172 VGVLSARTH 180
VG+LSA +H
Sbjct: 321 VGILSACSH 329
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 24/189 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD++S+ ++++GY ++ + Q F++M ERD V W M+DG++ V +
Sbjct: 49 LFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSS 108
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
F++I N + + V++L A G + + D+ ++N + A NA+I
Sbjct: 109 WEFFEKIPNPNTV----SWVTMLCGFARFGKIAEA---RRLFDQMPIRN-VVAWNAMIAA 160
Query: 127 YCK-CTV--------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y + C V +WTT+I G G D+A + +QM + KPD+ +
Sbjct: 161 YVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTF 219
Query: 172 VGVLSARTH 180
LS+ H
Sbjct: 220 ACGLSSCAH 228
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A+++ Y + A F + D V W ++I Y REAL LF +++
Sbjct: 250 DLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKME 309
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ DE T V IL+A +++G ++ G
Sbjct: 310 VEGVAPDEVTFVGILSACSHVGLIDQG 336
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M L +F M K+ +S+ ++SGY Q+D A + F M E++ V W ++I G+L+
Sbjct: 375 MDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQN 434
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N + +AL + D+ T L+A ANL AL++G + YI K+ ND+F G
Sbjct: 435 NLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVG 494
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI MY KC V+ +W ++I G A++G +KA F QM +
Sbjct: 495 NALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVV 554
Query: 166 PDEVAYVGVLSARTH 180
PDEV ++G+LSA +H
Sbjct: 555 PDEVTFIGMLSACSH 569
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 93/175 (53%), Gaps = 15/175 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M +K+V+S+ A+++ Y+ QVD A + F +MP +D V WTT+I+GY+RV
Sbjct: 251 MAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRV 310
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK--NDIF 118
+ EA ++ ++ +I ++++ G ++ + + + I + V N +
Sbjct: 311 GKLDEARQVYNQMPCKDITAQ----TALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMI 366
Query: 119 AG-------NALIDMYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
AG + ++++ + +K +W TMI G A +G D+A ++F M +I
Sbjct: 367 AGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNI 421
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ IF M +K++++Y +++S ++ ARQ FDQM R+ V W TMI GYL N
Sbjct: 36 AIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMV 95
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNA 122
EA LF + D F+ ++T G LE E ++ DK
Sbjct: 96 EEASELFDVMPER----DNFSWALMITCYTRKGKLEKARELLELVPDK------------ 139
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+D C W MI G A G + A +F QM D V+Y +L+ T N
Sbjct: 140 -LDTAC-------WNAMIAGYAKKGQFNDAKKVFEQM----PAKDLVSYNSMLAGYTQN 186
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD++SY ++++GY ++ +A Q F+ M ER+ V W M+ GY++
Sbjct: 163 KVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSS 222
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGAL-ELGEWIKTYIDKNKVKNDIFAGNALI 124
A LF++I N + + V++L A G + E E KN V + +
Sbjct: 223 AWQLFEKIPNPNAV----SWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQ 278
Query: 125 DMYCKCTVKF----------TWTTMIVGLAISGNGDKALDMFSQM 159
D+ VK +WTT+I G G D+A +++QM
Sbjct: 279 DLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM 323
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + A+++GY + Q + A++ F+QMP +D V + +M+ GY + + AL F+ +
Sbjct: 141 DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMT 200
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
N++ + + + A +L E K+ N NA+
Sbjct: 201 ERNVVSWNLMVAGYVKSGDLSSAWQLFE---------KIPNP----NAV----------- 236
Query: 135 TWTTMIVGLAISGNGDKALDMFSQM 159
+W TM+ GLA G +A ++F +M
Sbjct: 237 SWVTMLCGLAKYGKMAEARELFDRM 261
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A+++ Y +V A Q F + D + W ++I GY +A F+++
Sbjct: 490 DLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMS 549
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ ++ DE T + +L+A ++ G G
Sbjct: 550 SERVVPDEVTFIGMLSACSHAGLANQG 576
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 16/171 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + + D +S+ +I+ GY+ + + A + F MPE++ + +T MI G+++ +EA
Sbjct: 168 IFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEA 227
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LFQE+Q + I D+ + ++L+A A+LGAL+ G WI TYI KN V+ D G AL DM
Sbjct: 228 LDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDM 287
Query: 127 YCKC------------TVKFT---WTTMIVGLAISGNGDKALDMFSQMLRA 162
Y KC T K + WT +I G AI G G +AL Q+ RA
Sbjct: 288 YAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREALYCL-QLYRA 337
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 47/200 (23%)
Query: 28 NREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86
N + A+ FD + R + +W M+ GY N+ EAL L+ ++ ++ + +T
Sbjct: 56 NSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFP 115
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL----------------------- 123
+L A ++L A+E + + I K +D++ N+L
Sbjct: 116 FLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRIPHP 175
Query: 124 --------IDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQML 160
ID Y KC ++T MI G +G +ALD+F +M
Sbjct: 176 DTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQEMQ 235
Query: 161 RASIKPDEVAYVGVLSARTH 180
A IKPD++ VLSA H
Sbjct: 236 IAGIKPDKIVLTNVLSACAH 255
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ +S T +VSGY V AR F + ++D V W +I GY + EA
Sbjct: 315 VFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEA 374
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L LF+ ++ ++ +T ++L A ANL LELG +++ K+ + DIF G
Sbjct: 375 LGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVG 434
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +W TMI+G A +G G +AL++F +ML + K
Sbjct: 435 NSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEK 494
Query: 166 PDEVAYVGVLSARTH 180
PD V +G L A +H
Sbjct: 495 PDHVTMIGTLCACSH 509
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+ + ++F M ++V S+ +I+S + VD + F MPE+D W +MI G+ +
Sbjct: 75 LDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQH 134
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+RF EAL F + + + ++++ S L+A + L L+LG I I K+K D+F G
Sbjct: 135 DRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMG 194
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+ LID Y KC + +W +I +G +AL+ F +M K
Sbjct: 195 SGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFK 254
Query: 166 PDEVAYVGVLSA 177
PDEV V+SA
Sbjct: 255 PDEVTLASVVSA 266
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + ++ Y V AR+ FD M E++ V W +I Y + EAL F +
Sbjct: 190 DVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMT 249
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKC--- 130
DE T+ S+++A A L A + G I + K +K +ND+ GNAL+DMY KC
Sbjct: 250 ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRV 309
Query: 131 ---------------------------------------TVK----FTWTTMIVGLAISG 147
T+K +W +I G +G
Sbjct: 310 NEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNG 369
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL +F + R S+ P + +L+A
Sbjct: 370 ENEEALGLFRMLKRESVCPTHYTFGNLLNA 399
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ V+ + F+ M E+D+V W TMI GY + EAL
Sbjct: 423 FQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEAL 482
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LFQ++ S D T++ L A ++ G +E G + Y ++ +
Sbjct: 483 ELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEG---RRYFFSMTKEHGLL--------- 530
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK +T M+ L +G ++A D+ M + +PD V + +LSA
Sbjct: 531 ---PVKDHYTCMVDLLGRAGCLEEAKDLIESMPK---QPDAVVWSSLLSA 574
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 109/187 (58%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY +R ++ A++ FD++P +D V W +I GY +E
Sbjct: 159 KVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKE 218
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+ +N+ DE T+V++++A A G+++LG + ++ID + + +++ NALID
Sbjct: 219 ALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALID 278
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC T W TMI G +AL +F +MLR+ P++V
Sbjct: 279 LYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVT 338
Query: 171 YVGVLSA 177
+ +L A
Sbjct: 339 MLSILPA 345
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 95/178 (53%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +V+ A F + +D + W TMI GY +N ++EAL LFQE+ S
Sbjct: 275 ALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENP 334
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A LGA++ G WI YIDK V N +LIDMY KC
Sbjct: 335 NDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQ 394
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI G A+ G + A D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 395 VFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 46/196 (23%)
Query: 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
N + + A F+ + E + ++W TM G+ + A+ L+ + + ++ + +T
Sbjct: 49 NFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPF 108
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------- 130
+L + A L + G+ I ++ K + D++ +LI MY K
Sbjct: 109 LLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRD 168
Query: 131 TVKFT-----------------------------WTTMIVGLAISGNGDKALDMFSQMLR 161
V +T W +I G A +GN +ALD+F +M++
Sbjct: 169 VVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228
Query: 162 ASIKPDEVAYVGVLSA 177
++KPDE V V+SA
Sbjct: 229 TNVKPDESTMVTVVSA 244
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 99/184 (53%), Gaps = 17/184 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V S+ A+++GY+ +D A + F++MPERD W+TMI GY + + AL LF ++
Sbjct: 394 ENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKM 453
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
S I +E T+VS+L+A A G L+ G W Y+ N + A+IDMY KC
Sbjct: 454 VASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSI 513
Query: 131 --------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ W +I GLA+ G+ + +L +FS + R IK + + ++GVL+
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLT 573
Query: 177 ARTH 180
A H
Sbjct: 574 ACCH 577
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 46/217 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M K+++S+ +++GY VD AR F+++P +D V W T+IDGY+RV R EA
Sbjct: 255 LFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEA 314
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK---------------- 110
L +++ + ++ ++ +V +++ A+ G+ + + + K
Sbjct: 315 LMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHL 374
Query: 111 -------NKV--------KNDIFAGNALIDMYCKCTV---------------KFTWTTMI 140
N+ K ++ + NALI Y + + F+W+TMI
Sbjct: 375 YAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMI 434
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G + + AL++F +M+ + IKP+EV V VLSA
Sbjct: 435 SGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSA 471
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF D +SY ++SGY+ Q+D A + FD+MP + V +TTMI G+ + + +A
Sbjct: 123 IFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQA 182
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF++++ ++ +E TI ++++A ++ G + + + K + + L+ M
Sbjct: 183 VELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRM 242
Query: 127 YCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQM 159
YC C+ +W M+ G + +G D A +F ++
Sbjct: 243 YCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERI 290
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K+ +++ ++SGY V ARQ FD+MP RD W+ MI Y+ +R A
Sbjct: 112 VFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGA 171
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALEL--GEWIKTYIDKNKVKNDIFAGNALI 124
L LFQ++ + I D+ SIL A++G+L L G+ + ++ KN+ + ++ G L+
Sbjct: 172 LLLFQDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLV 231
Query: 125 DMYCKCT-VKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +K+ TWT +I GLA G +AL +F M ++P+E
Sbjct: 232 DMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEF 291
Query: 170 AYVGVLSARTH 180
+ GVLSA H
Sbjct: 292 TFTGVLSACVH 302
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +V Y + A Q F+ M ER+ WT +I G +EAL LF+ ++ +
Sbjct: 228 TVLVDMYAKCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVE 287
Query: 80 GDEFTIVSILTARANLGALELGE 102
+EFT +L+A + G ++ G
Sbjct: 288 PNEFTFTGVLSACVHAGLVQEGR 310
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 106/184 (57%), Gaps = 18/184 (9%)
Query: 12 KNKDVISYTA--IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
K ++ SYTA ++ Y + AR+ FD M E+D V W MI GY + EA+TL
Sbjct: 257 KKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTL 316
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F ++ + I +E T+V +L+A A++GAL+LG+W++ Y + +++D++ +AL+DMY K
Sbjct: 317 FNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAK 376
Query: 130 CTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVG 173
C + +W MI LA G +AL +FS+ML S ++P+++ ++G
Sbjct: 377 CGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFIG 436
Query: 174 VLSA 177
V +A
Sbjct: 437 VFAA 440
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N D ++++ Y ++D AR+ FD++ ERD V W +MI GY ++ REA+ LF E
Sbjct: 159 NNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFME 218
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ E T+VSIL A +LG L LG+W++ I K++ + + +ALIDMY KC
Sbjct: 219 MREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGD 278
Query: 133 KF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW MI G A +G D+A+ +F+ M A I P+E+ V VLSA
Sbjct: 279 LMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSA 338
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNR-FREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97
F QMP + + MI G R + A+ L+ ++++ + + FT + + ANL A
Sbjct: 83 FTQMPNPNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVA 142
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVG 142
L G+ + + K ND ++LI MY KC+ +W +MI G
Sbjct: 143 LHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISG 202
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +A+ +F +M +P E+ V +L A
Sbjct: 203 YTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGA 237
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ +M +K+V+S+ ++ YI ++ AR+ F MP+RD V W ++I G + V + A
Sbjct: 206 LLESMPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGA 265
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF E+Q + + E T++S+L A A GALE+G I + K + + GNAL++M
Sbjct: 266 MGLFSEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNM 325
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEV 169
Y KC W MIVGLA+ G ++AL +FS+M +++P+ V
Sbjct: 326 YSKCGKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRV 385
Query: 170 AYVGVLSARTH 180
++GVL A +H
Sbjct: 386 TFLGVLIACSH 396
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 111/192 (57%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+++T ++ Y +D A + F +P +D V WT+M+ GY + ++
Sbjct: 165 KVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKK 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNAL 123
AL F++++ + ++ DE T+V ++A A LG +WI+ + ++ +++F G+AL
Sbjct: 225 ALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSAL 284
Query: 124 IDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC V+ F++++MIVG A+ G A+ +F +ML IKP+
Sbjct: 285 IDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNH 344
Query: 169 VAYVGVLSARTH 180
V +VG+ +A +H
Sbjct: 345 VTFVGLFTACSH 356
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 55/188 (29%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN--LG 96
F Q+ + L++ +I Y R F ++ L+ + +N+ FT ++ + N LG
Sbjct: 69 FSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLG 128
Query: 97 A-LELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-----CTVK----------FTWTTMI 140
+ L L ++ ++ ND++ GN +I MY K C K TWT +I
Sbjct: 129 SQLHLHAFLFGFV------NDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELI 182
Query: 141 VGLAISGNGD-------------------------------KALDMFSQMLRASIKPDEV 169
V A SG+ D KAL F +M A + DE+
Sbjct: 183 VAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEI 242
Query: 170 AYVGVLSA 177
VG +SA
Sbjct: 243 TLVGAISA 250
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + +V+ + ++++GY+ R D AR+ FD+MPER+ WT M+ G+ + + + A
Sbjct: 187 LFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLA 246
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK----NKVKNDIFAGNA 122
L+LF +++ + + D+ +V+ L+A A LG L LG+WI Y+++ + + NA
Sbjct: 247 LSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNA 306
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML---RASI 164
LI MY C V +W+++I G A G G +A+ +F ML + +
Sbjct: 307 LIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEV 366
Query: 165 KPDEVAYVGVLSARTH 180
+PDE+ ++G L+A +H
Sbjct: 367 RPDEITFIGALTACSH 382
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 51/207 (24%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++S YI+ + A++ F+ + +W +I G+ R ++++ LF+ + + + +
Sbjct: 65 LLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEAN 124
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-----------KC 130
FT +L+A GE I + N ++++ LI++Y +
Sbjct: 125 GFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRA 184
Query: 131 TVKF---------TWTTMIVG-------------------------------LAISGNGD 150
F W +++ G A +G
Sbjct: 185 RYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCK 244
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL +F QM RA ++ D+VA V LSA
Sbjct: 245 LALSLFDQMRRAGVELDQVALVAALSA 271
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 55/227 (24%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +KD+IS+ +++ GY+ +++ A+ FD MP RD V W+TMIDGY ++ +
Sbjct: 246 KLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQ 305
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S++ DE T+V +L+A A
Sbjct: 306 AKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIA 365
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKC-TVKFT------------- 135
LG L + YI V+ F G ALIDMY KC +++
Sbjct: 366 QLGRLSKAMDMHLYI----VEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSID 421
Query: 136 -WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W MI GLAI G G+ A DM Q+ R SIKPD++ +VG+L+A +H+
Sbjct: 422 HWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHS 468
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 30/197 (15%)
Query: 5 LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
++I G +K D+ ++ Y+ + ARQ FD+MP+RD V + +MIDGY++
Sbjct: 145 MQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKC 204
Query: 61 NRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
A LF ++M +E ++S + + G I + + D+ +
Sbjct: 205 GSTESARELF------DLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLIS 258
Query: 120 GNALIDMYCKC----TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASI 164
N++ID Y K K+ TW+TMI G A G +A +F QM
Sbjct: 259 WNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHR-- 316
Query: 165 KPDEVAYVGVLSARTHN 181
D V+Y +++ N
Sbjct: 317 --DVVSYNSMIAGYVQN 331
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 9 GTMKNKDVISYTAIVSGYINRE-QVDIARQCFDQMPER----------DYVLWTTMIDGY 57
G +KN ++ + + R V+ AR F + R D LW +I +
Sbjct: 41 GFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSH 100
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R AL LF + + + D+F++ +L A + LG ++ G I ++ K + +D+
Sbjct: 101 SHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDL 160
Query: 118 FAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
F N LI +Y KC ++ +MI G G+ + A ++F M
Sbjct: 161 FLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLM 217
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
IF + KD++S+ +++ N + AR FD MP+++ + W TMI GYL + E
Sbjct: 172 SIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAE 231
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF E++ N D T+ +L+A A+LG L G + Y +++ + +LID
Sbjct: 232 AVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLID 291
Query: 126 MYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T++ + W +I GLA+ G G A+ + +M ++PDE+
Sbjct: 292 MYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEIT 351
Query: 171 YVGVLSARTH 180
++G+LSA +H
Sbjct: 352 FIGLLSACSH 361
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KDV+ + ++++ Y + Q+D A + FD MP +D + MI GY ++ +
Sbjct: 110 KVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAA 169
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A ++F I +I+ + S++ A N+G D +N L D
Sbjct: 170 ARSIFDRIHAKDIV----SWNSMILACTNVG------------DMGNARN-------LFD 206
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ K V TW TMI G + +A+D+F +M + + D + VLSA H
Sbjct: 207 VMPKKNV-ITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAH 260
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
W +I + +A+ + E++ D FT +L A ++L + +G +
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 110 KNKVKNDIFAGNALIDMYC------KCTVKF---------TWTTMIVGLAISGNGDKALD 154
K F G AL+DMY T F W +M+ A G D A+
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 155 MFSQM 159
+F M
Sbjct: 142 LFDNM 146
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 46/223 (20%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L++F M +D S+T +V G +V+ AR+ FDQMP R+ V W MI+GY++ F
Sbjct: 197 ALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF 256
Query: 64 REALTLFQEIQ-----TSNIM--GDEF------------------------TIVSILTAR 92
AL LF ++ T N+M G E T+VS+L+A
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT---------------WT 137
+ L L G WI +Y++KN + D G +LI+MY KC + WT
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+IVGL I G + AL +F +M + +KP+ + ++GVL+A H
Sbjct: 377 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 419
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 2 GFTLEI-FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
G L+I FG+ DV ++V+ Y ++D AR+ FD M ++D VLW ++IDGY R
Sbjct: 136 GLALKIGFGS----DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARC 191
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
AL LF+E+ D F+ ++ + G +E + D+ +N + +
Sbjct: 192 GEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESA---RKLFDQMPCRN-LVSW 243
Query: 121 NALIDMYCKCTVKF----------------TWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NA+I+ Y K + F TW MI G ++G A+ MF ML+
Sbjct: 244 NAMINGYMK-SGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS 302
Query: 165 KPDEVAYVGVLSA 177
+P V VLSA
Sbjct: 303 RPSHATLVSVLSA 315
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD++ R + W T+I Y+ + + LF E+ + D FT+ ++ A
Sbjct: 66 ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCAR 124
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
LG ++ G+ I K +D+F +L++MY KC W ++
Sbjct: 125 LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 184
Query: 140 IVGLAISGNGDKALDMFSQM 159
I G A G D AL +F +M
Sbjct: 185 IDGYARCGEIDIALQLFEEM 204
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ +++GY ++ +AR+ F +MP +D V W+TMI G+ F +
Sbjct: 193 QVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFND 252
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A F+E++ + +E ++ +L+A A GA E G + +++K+ I NALID
Sbjct: 253 AFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALID 312
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +WT MI G+A+ G G++A+ +F++M ++IKPD +
Sbjct: 313 TYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSIT 372
Query: 171 YVGVLSARTH 180
++ +L A +H
Sbjct: 373 FISILYACSH 382
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++S Y + AR+ FD+M E + V W ++ R ++A +F+ + N+
Sbjct: 145 TTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLT 204
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+L G L+L + K +K+D+ +W+TM
Sbjct: 205 SWNI----MLAGYTKAGELQLA---REVFMKMPLKDDV-----------------SWSTM 240
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
IVG A +GN + A F ++ R ++P+EV+ GVLSA
Sbjct: 241 IVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSA 278
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D+AR FD M R V WT MI G EA+ LF E++ SNI
Sbjct: 309 ALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKP 368
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T +SIL A ++ G ++LG + ++ ++ I ++D+Y +
Sbjct: 369 DSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGR---------- 418
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +A D QM I P+++ + +L A
Sbjct: 419 ------AGKLQQAYDFVCQM---PISPNDIVWRTLLGA 447
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSI 88
+ + AR+ F + D ++ T+I G + AL LF E++ ++ + D F+ +
Sbjct: 53 DSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFL 112
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
L A AN AL G + + + +F G LI MY +C
Sbjct: 113 LKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECA 155
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M ++++S++ +V GY +D+AR FD+ P ++ VLWTT+I GY
Sbjct: 235 MDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEK 294
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
REA L+ +++ + + D+ ++SIL A A G L LG+ I + + + +
Sbjct: 295 GLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVL 354
Query: 121 NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NA IDMY KC +W +MI G A+ G+G+KAL++FS M++
Sbjct: 355 NAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGF 414
Query: 165 KPDEVAYVGVLSARTH 180
+PD +VG+L A TH
Sbjct: 415 EPDTYTFVGLLCACTH 430
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+ +F M+ +DV+++ +++ G + ++ A + FD+MP+RD V W TM+DGY +
Sbjct: 177 MSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMD 236
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A LF+ + NI+ + +++ + G +++ + D+ VKN +
Sbjct: 237 TAFELFERMPWRNIV----SWSTMVCGYSKGGDMDMA---RMLFDRCPVKNVVL------ 283
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WTT+I G A G +A +++ +M A ++PD+ + +L+A
Sbjct: 284 -----------WTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAA 325
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNIMGDEFTIVSILTARA 93
A F+ +P + L+ ++I + + R F ++Q + + D FT +L A +
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACS 131
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK-----------------FTW 136
+L L I +++K DIF N+LID Y +C TW
Sbjct: 132 GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTW 191
Query: 137 TTMIVGLAISGNGDKALDMFSQM 159
+MI GL G A +F +M
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEM 214
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +D +S+ ++ GYI V A F MP ++ V WT++I G + + E
Sbjct: 144 QLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVE 203
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL+L E+Q + D I S+LTA ANLGAL+ G W+ Y+ N V D G AL++
Sbjct: 204 ALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVN 263
Query: 126 MYCKC-----------TVK------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC +K + WT MI G AI G G +AL+ F++M R I+P+
Sbjct: 264 MYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNS 323
Query: 169 VAYVGVLSA 177
+ + VL A
Sbjct: 324 ITFTAVLRA 332
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 50/191 (26%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ F+ + + +W +I Y + A +Q++ +S++ + +T +L A N
Sbjct: 41 AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100
Query: 95 LGALELGEWIKTY--IDKNKVKNDIFAGNALIDMYCKC---------------------- 130
L L +GE ++ + + K +D+FA NAL+ +Y C
Sbjct: 101 L--LAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWN 158
Query: 131 ----------TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
VK +WT++I GL +G +AL + +M A +
Sbjct: 159 IMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL 218
Query: 167 DEVAYVGVLSA 177
D VA +L+A
Sbjct: 219 DGVAIASLLTA 229
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D + A+V+ Y+ ++ A F ++ ++D +WT MIDG+ R EAL F
Sbjct: 254 DRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNR 313
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ I + T ++L A + G +E G+ + K + N I+ Y C V
Sbjct: 314 MRREGIRPNSITFTAVLRACSYGGLVEEGK------ELFKSMKCFYNVNPSIEHY-GCMV 366
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG D+A ++ +M +KP V + +L A
Sbjct: 367 DL--------LGRSGRLDEAKELIKKM---PMKPSAVIWGALLKA 400
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+S TA+++GY +R AR+ FD++ ERD V W MI GY+ R+ E
Sbjct: 120 KVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEE 179
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE----WIKTYIDKNKVKNDIFAGN 121
AL LF+E+ +N+ DE T+VS+++A A G++ELG W+ D + + + N
Sbjct: 180 ALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVN 239
Query: 122 ALIDMYCKC---TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALID+Y KC F +W T+I G + +AL +F +MLR+ P
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299
Query: 167 DEVAYVGVLSARTH 180
++V + VL A H
Sbjct: 300 NDVTLLSVLPACAH 313
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y V+ A F+ + +D V W T+I GY N ++EAL LFQE+ S
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++S+L A A+LGA+++G WI YIDK V N+ +LIDMY KC
Sbjct: 300 NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQ 359
Query: 131 ---TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
++ + +W MI G A+ G + A D+FS+M ++PD++ +VG+LSA +H+
Sbjct: 360 VFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A + Y V+IA F+ + +D V W T+I GY +N ++EAL LFQE+ S
Sbjct: 256 AFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++S+L A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 316 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQ 375
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I+PD++ VG+LSA +H+
Sbjct: 376 VFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +DV+S TA+++GY +R V AR+ FD + ERD V W MI GY+ + E
Sbjct: 139 KVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEE 198
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALI 124
AL LF+E+ +N+ DE T+VS+L+A A G++ELG I T +D + + + NA I
Sbjct: 199 ALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFI 258
Query: 125 DMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+Y KC + K +W T+I G +AL +F +MLR+ P++V
Sbjct: 259 GLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDV 318
Query: 170 AYVGVLSARTH 180
+ VL A H
Sbjct: 319 TMLSVLPACAH 329
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A Q F+ M + W MI G+ R A LF ++ + I
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417
Query: 80 GDEFTIVSILTARANLGALELGEWI 104
D+ T+V +L+A ++ G L+LG I
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHI 442
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP +D V W TMIDGY ++ +
Sbjct: 214 KLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQ 273
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A LF E+ + S++ DE T+V +L+A A
Sbjct: 274 AKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIA 333
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L I YI NK + G ALID Y KC +++ + W
Sbjct: 334 QLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNA 393
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLAI G G+ A DM Q+ + SIKPD++ ++GVL+A +H+
Sbjct: 394 MIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHS 436
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 28/176 (15%)
Query: 6 EIFGTM--KNKDVISYTAIVSGYINREQ-VDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M + K++IS+ ++SGY E V++A + FD+MPE+D + W ++IDGY++ R
Sbjct: 180 ELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRR 239
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A +LF + +++ T +++ A LG + K D+ + D+ A N
Sbjct: 240 IEDAKSLFDLMPRKDVV----TWATMIDGYAKLGFVHQA---KKLFDEMP-QRDVVAYN- 290
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+M+ G + +A+ +F+ M + S + PDE V VLSA
Sbjct: 291 ---------------SMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSA 331
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 9 GTMKNKD-----VISYTAIVSGYINREQVDIARQCFDQMP------ERDYVLWTTMIDGY 57
G +KN + V+S++A Y+ + AR F + E D LW +I +
Sbjct: 13 GFIKNPNLTTRIVLSFSASRRSYL----AEFARCIFHEYHVSSYSVEEDPFLWNAVIKSF 68
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R AL LF + +++ D+F+I +L A + LG ++ G + ++ K + +D+
Sbjct: 69 SHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDL 128
Query: 118 FAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
F N LI +Y KC ++ +MI G G + A ++F M R
Sbjct: 129 FLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPR 187
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DVIS++ +++ ++ +D AR FDQMP RD V WT MI Y R
Sbjct: 177 VGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARA 236
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R REAL LF + + DE T++S+++A LG L GE + Y+D N +
Sbjct: 237 RRPREALALFDAMP---VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLR 293
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLR--AS 163
NAL+DMY KC TV+ +W T I A G+ + + +F +ML S
Sbjct: 294 NALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKS 353
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPD + VL+A H
Sbjct: 354 VKPDGTTLLAVLTAYAHK 371
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N ++ +++ Y ++ AR FD+M + V + +I GY R ++ EAL+LF+E
Sbjct: 162 NHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRE 221
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+Q SNI + T++S++ + A LGAL+LG+WI Y+ K + ALIDM+ KC
Sbjct: 222 LQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGS 281
Query: 131 -----------TVKFT--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
V+ T W+ MIV A G+G KA+ MF +M R ++PDE+ ++G+L A
Sbjct: 282 LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYA 341
Query: 178 RTH 180
+H
Sbjct: 342 CSH 344
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 15/159 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A FDQ+ ++D +L+ M GY R N A +LF E+ S ++ D++T S+L A
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTW 136
A+ AL G + + K + ++I+ LI+MY +C ++
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+I G A S ++AL +F ++ ++I+P +V + V+
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVI 238
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 27 INREQVDIARQC---------FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
+N +D+ +C F+ M RD W+ MI + +A+++F+E++
Sbjct: 268 VNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREG 327
Query: 78 IMGDEFTIVSILTARANLGALELG 101
+ DE T + +L A ++ G +E G
Sbjct: 328 VRPDEITFLGLLYACSHAGLVEQG 351
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++V S+ +++GY + AR FD+MP+RD + W +I GY + E
Sbjct: 237 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E++ + T S L+ A + ALELG+ + + K +++ + GNAL+
Sbjct: 297 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 356
Query: 126 MYCKCT------VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC + F +W TMI G A G G +AL +F M + I PD+V
Sbjct: 357 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 416
Query: 171 YVGVLSARTH 180
VGVLSA +H
Sbjct: 417 MVGVLSACSH 426
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 24/170 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +DV ++TA+VSGY+ +D AR+ FD MPE++ V W +I GY++ R +A
Sbjct: 176 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 235
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ + N+ + +++T A G + + + D+ ++ I
Sbjct: 236 RELFEAMPCQNVS----SWNTMITGYAQNGDIAQA---RNFFDRMPQRDSI--------- 279
Query: 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W +I G A SG G++AL +F +M R + + + LS
Sbjct: 280 --------SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 321
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 27/186 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + ++IS+ ++ GY+ R ++ AR FD+MPERD V W TMI GY + EA
Sbjct: 114 LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 173
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+E ++ FT ++++ G L+ + D KN + + NA+I
Sbjct: 174 QRLFEESPVRDV----FTWTAMVSGYVQNGMLDEA---RRVFDGMPEKNSV-SWNAIIAG 225
Query: 127 Y--CK-------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y CK C +W TMI G A +G+ +A + F +M + D +++
Sbjct: 226 YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM----PQRDSISW 281
Query: 172 VGVLSA 177
+++
Sbjct: 282 AAIIAG 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+ A++SGY V A++ FD+MP ++ + W M+ Y++ R +A
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 111
Query: 67 LTLFQE------IQTSNIMGDEFTIVSILTARANLGALELGEWIK--TYIDKNKVKNDIF 118
LF+ I + +MG ++ AR + + + T I ++
Sbjct: 112 RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 171
Query: 119 AGNALIDMYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQM 159
L + + V+ FTWT M+ G +G D+A +F M
Sbjct: 172 EAQRLFE---ESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y +D A F+ + E++ V W TMI GY R +EAL LF+ ++ + I+
Sbjct: 352 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 411
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T+V +L+A ++ G ++ G
Sbjct: 412 PDDVTMVGVLSACSHTGLVDKG 433
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 29/190 (15%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLR--------VNRF------RE 65
TAI+ Y R + AR FD+M + + V W TMIDGY R +N F E
Sbjct: 107 TAILGMYSKRRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKGLNEE 166
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID
Sbjct: 167 ALAWFREMQVSGVEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLID 226
Query: 126 MYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+YC+C V+F +W ++IVG A +G+ ++L F +M KPD V
Sbjct: 227 LYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPDAVT 286
Query: 171 YVGVLSARTH 180
+ G L+A +H
Sbjct: 287 FTGALTACSH 296
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ FD+M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 234 VEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPDAVTFTGALTA 293
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + + ++ I L+D+Y + +G +
Sbjct: 294 CSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSR----------------AGRLE 337
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
AL + M +KP+EV +L+A RTH
Sbjct: 338 DALKVVESM---PMKPNEVVIGSLLAACRTH 365
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 17/164 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGY-LRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTAR 92
A++ FD+MP+RD + WT+++ GY +R + EAL F ++ + + +E +VSIL+A
Sbjct: 211 AKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSAC 270
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWT 137
A+LGAL+ G+WI YIDKN++ ALIDMY KC TWT
Sbjct: 271 AHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWT 330
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+MI GL++ G G + L FS+ML KPD++ +GVL+ +H+
Sbjct: 331 SMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHS 374
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSN-IMGDEFTIVSILTAR 92
AR+ F+QM ERD WT+++ GY + R +LT F + + + +E +V +L+A
Sbjct: 414 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSAC 473
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWT 137
A+LGAL+ G WI YIDK ++ ALIDMY KC ++T
Sbjct: 474 AHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFT 533
Query: 138 TMIVGLAISGNGDKAL 153
+MI GL+ G G AL
Sbjct: 534 SMISGLSYHGLGKDAL 549
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 12 KNKDVISY---TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KN+ ++S TA++ Y ++D AR+ FD + +RD + WT+MI G E L
Sbjct: 288 KNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLW 347
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
F E+ D+ T++ +L ++ G +E E + + K+ +++++ GN++I+M
Sbjct: 348 TFSEMLAEGFKPDDITLLGVLNGCSHSGLVE-EEIVHGMVVKSGFESNLYVGNSVINM-- 404
Query: 129 KCTV------------------KFTWTTMIVGLAISGNGDKA-LDMFSQML-RASIKPDE 168
C+V F+WT+++ G A G D+A L F ML + P+E
Sbjct: 405 -CSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNE 463
Query: 169 VAYVGVLSARTH 180
V VLSA H
Sbjct: 464 AVLVCVLSACAH 475
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEI--QTSN 77
++ YI + AR FDQ P ++W MI Y + +E+L LF ++
Sbjct: 92 PLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRP 151
Query: 78 IMGDEFTIVSILTARANLGALE-LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK--- 133
D++T + TA + L GE + + K+ ++DIF GN+L++MY +
Sbjct: 152 TSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDA 211
Query: 134 ------------FTWTTMIVGLAISGN-GDKALDMFSQML-RASIKPDEVAYVGVLSART 179
TWT+++ G A+ G ++AL F+ ML +KP+E V +LSA
Sbjct: 212 KRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACA 271
Query: 180 H 180
H
Sbjct: 272 H 272
>gi|302820595|ref|XP_002991964.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
gi|300140206|gb|EFJ06932.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
Length = 353
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 17/194 (8%)
Query: 4 TLEIFGTMK-NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
LE+F +M+ K+V+S+TAIV+ +++D AR FD+MP R+ V W +I GYL +R
Sbjct: 61 ALEVFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFDRMPIRNVVSWNAIITGYLDDDR 120
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A+ L+ ++ + D T V++L A A++ L LG I ++ + ++ DI G A
Sbjct: 121 PPDAIDLYYRMRQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIEGDILVGTA 180
Query: 123 LIDMY--CKCTVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
L+ MY C CT W+ +I + GNG KAL++F ML I P
Sbjct: 181 LLSMYGRCGCTEMAVRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILP 240
Query: 167 DEVAYVGVLSARTH 180
+ V V VLSA +H
Sbjct: 241 NGVTLVSVLSACSH 254
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEI 73
D++ TA++S Y ++A + F MP R D V+W+ +I + +AL +F +
Sbjct: 174 DILVGTALLSMYGRCGCTEMAVRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGM 233
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG 101
I+ + T+VS+L+A +++GA+E G
Sbjct: 234 LLDGILPNGVTLVSVLSACSHIGAVEKG 261
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCKCTVK----- 133
DE T+VS + A A+ G L +G + + + + D GN+LI++Y KC +
Sbjct: 4 DEVTVVSAIDACAHQGDLAMGIAVHSDLASSGGIEIEDAAVGNSLINLYGKCRMAEEALE 63
Query: 134 -----------FTWTTMIVGLAISGNGDKALDMFSQM 159
+WT ++ LA + D+A D+F +M
Sbjct: 64 VFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFDRM 100
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L+ F + N +VI TAIV Y + AR F++MP R+ V W +MI Y + +
Sbjct: 237 LDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQAN 296
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
EAL LF +++ + D+ T + ++ A A+LGAL G+ + Y+ K + +D G AL+
Sbjct: 297 EALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALV 356
Query: 125 DMYCK------CTVKFT---------WTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDE 168
DMY K F+ WT++I+GLA+ G+G++AL F +M ++ PDE
Sbjct: 357 DMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDE 416
Query: 169 VAYVGVLSARTH 180
+ Y+GVLSA +H
Sbjct: 417 ITYIGVLSACSH 428
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + TA++ Y ++ A + FD +P+ + V WT++I G + + EA+ ++++++
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN---------ALID 125
++ +E T+V++L A A L G W+ + + D F N A++D
Sbjct: 199 LWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGL--DPFQSNSNFNVILATAIVD 256
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T W +MI G ++ALD+FS M A PD+
Sbjct: 257 MYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKAT 316
Query: 171 YVGVLSARTH 180
++ V+ A H
Sbjct: 317 FLCVIGACAH 326
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 14 KDVISYTAIV--SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+DVI + +V Y + ++ A+ F+Q+ +W +MI GY EALT+++
Sbjct: 35 QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC- 130
E++ D FT +L A + + LG+ + I K + D++A AL+ MY C
Sbjct: 95 EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACG 154
Query: 131 ----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+K WT++I G + +A+ ++ M S+ P+E+ V VL
Sbjct: 155 DMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLV 214
Query: 177 A 177
A
Sbjct: 215 A 215
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M ++ S+ ++SGY + AR FD MP+RD V W +I GY +
Sbjct: 297 MDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQN 356
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EA+ + E++ + T L+A A++ ALELG+ + + + + G
Sbjct: 357 GLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVG 416
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+ MYCKC +W TM+ G A G G +AL +F M+ A +K
Sbjct: 417 NALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVK 476
Query: 166 PDEVAYVGVLSARTH 180
PDE+ VGVLSA +H
Sbjct: 477 PDEITMVGVLSACSH 491
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +M KDV+S+ A++SGY+ VD AR FD+MP ++ + W ++ Y+R R EA
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA 176
Query: 67 LTLFQE------IQTSNIMGDEFTIVSILTARANLGALELGEWIK--TYIDKNKVKNDIF 118
LF+ I + +MG + AR + + + I T I D+
Sbjct: 177 RRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLS 236
Query: 119 AGNALIDMYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQM 159
L + + V+ FTWT M+ G D+A +F +M
Sbjct: 237 QARRLFE---ESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +KD+ S+ +++GY ++ AR FD MPE+D V W M+ GY+R E
Sbjct: 85 DLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDE 144
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + N + +L A G LE + ++K ++ + N L+
Sbjct: 145 ARDVFDRMPHKN----SISWNGLLAAYVRSGRLEEAR----RLFESKSDWELISCNCLMG 196
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
Y K + +W TMI G A G+ +A +F +
Sbjct: 197 GYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE 244
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
L +F M ++ +SY A++SGY+ + +AR FD+MP +D W M+ GY R R
Sbjct: 51 LALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRR 110
Query: 63 FREALTLFQEIQTSNIM 79
R+A LF + +++
Sbjct: 111 LRDARMLFDSMPEKDVV 127
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F + +D+IS+ ++SGY + AR+ F++ P RD WT M+ Y++
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILT-ARANLGA--------LELGEWIKTYIDKN 111
EA +F E+ M I R ++G +G W I
Sbjct: 264 GMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSW-NIMISGY 322
Query: 112 KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
D+ L DM + +W +I G A +G ++A++M +M R + +
Sbjct: 323 CQNGDLAQARNLFDMMPQ-RDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381
Query: 172 VGVLSA 177
LSA
Sbjct: 382 CCALSA 387
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++ T K + A+V Y +D A F + +D V W TM+ GY R R+
Sbjct: 403 QVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQ 462
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
ALT+F+ + T+ + DE T+V +L+A ++ G + G
Sbjct: 463 ALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRG 498
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ + T +S ++ D+A FD MP R+ V + MI GYLR +F A LF
Sbjct: 29 EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFD 88
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
++ ++ F+ +LT A +N+ D L D +
Sbjct: 89 KMPHKDL----FSWNLMLTGYA----------------RNRRLRD---ARMLFDSMPEKD 125
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
V +W M+ G SG+ D+A D+F +M + +++ G+L+A
Sbjct: 126 V-VSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAA 166
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M ++V+S+ A++ Y + + AR+ FD MP R+ W++M+ G +R NR EAL
Sbjct: 162 FDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEAL 221
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F E+ ++ +E +VS ++A + L +LE G W+ Y + + A++DMY
Sbjct: 222 RVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMY 281
Query: 128 CKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC VK ++W +MI GLA++G +AL +F +M A ++P+++ ++
Sbjct: 282 GKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFI 341
Query: 173 GVLSARTHN 181
G+L A +H+
Sbjct: 342 GLLGACSHS 350
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQE 72
+DV +A VS Y V A + F + D V WTTM+ G+ A F
Sbjct: 105 RDVYVLSAAVSAYFRATDVASAERLFSYTKDVADVVTWTTMVTGHANTGDLERARWFFDA 164
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N++ + ++L A A+ G L K+ + + + NA
Sbjct: 165 MPERNVV----SWNAMLGAYASAGMLS---------KARKLFDIMPSRNAA--------- 202
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++M+ GL S ++AL +FS+M+ + P+E A V +SA
Sbjct: 203 --SWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSA 245
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
++ ++ TAIV Y + A + F MP ++ W +MI G R +AL+LF
Sbjct: 266 LQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLF 325
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
++Q + + ++ T + +L A ++ G ++ G W+
Sbjct: 326 WKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWL 359
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+T +V G + +VD AR+ FD MPER+ V W M+ GY++ RF +AL +F E++
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
+ G+ F + + A GAL G + +++++ ++ D A++DMYCKC
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGCVE 289
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+W MI G A+ G G+ AL++F M R + PD+V V VL+A
Sbjct: 290 EAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACA 349
Query: 180 H 180
H
Sbjct: 350 H 350
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V+ A + F+ +P R W MI G+ R +AL LF ++ +
Sbjct: 276 TAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVA 335
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDK 110
D+ T+V++LTA A+ G + G YI +
Sbjct: 336 PDDVTLVNVLTACAHAGMVSEGRHYFNYISQ 366
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++V S+ +++GY + AR FD+MP+RD + W +I GY + E
Sbjct: 318 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF E++ + T S L+ A + ALELG+ + + K +++ + GNAL+
Sbjct: 378 ALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLV 437
Query: 126 MYCKCT------VKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC + F +W TMI G A G G +AL +F M + I PD+V
Sbjct: 438 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 497
Query: 171 YVGVLSARTH 180
VGVLSA +H
Sbjct: 498 MVGVLSACSH 507
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 24/170 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +DV ++TA+VSGY+ +D AR+ FD MPE++ V W +I GY++ R +A
Sbjct: 257 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 316
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ + N+ + +++T A G + + + D+ ++ I
Sbjct: 317 RELFEAMPCQNVS----SWNTMITGYAQNGDIAQA---RNFFDRMPQRDSI--------- 360
Query: 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W +I G A SG G++AL +F +M R + + + LS
Sbjct: 361 --------SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 402
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 46/196 (23%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +D++S+ ++SG + + AR FDQMPERD V W M+ GY + +E
Sbjct: 101 QLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE 160
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGAL-------------ELGEW---IKTYID 109
A +F E+ N + +L A G + EL W + Y+
Sbjct: 161 AKEIFDEMPCKN----SISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 216
Query: 110 KNKV-----------KNDIFAGNALIDMYCK-------------CTVK--FTWTTMIVGL 143
+N++ + D + N +I Y + V+ FTWT M+ G
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGY 276
Query: 144 AISGNGDKALDMFSQM 159
+G D+A +F M
Sbjct: 277 VQNGMLDEARRVFDGM 292
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 24/153 (15%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +M + IS+ A++SG ++ ++ +ARQ F++MP RD V W MI G +R
Sbjct: 68 ALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNL 127
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
R A LF ++ +++ + ++L+ A G Y+ + K +IF
Sbjct: 128 RAARLLFDQMPERDVV----SWNAMLSGYAQNG----------YVKEAK---EIFD---- 166
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156
+M CK ++ +W M+ +G + A +F
Sbjct: 167 -EMPCKNSI--SWNGMLAAYVQNGRIEDARRLF 196
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +D A F+ + E++ V W TMI GY R +EAL LF+ ++ + I+
Sbjct: 434 ALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP 493
Query: 81 DEFTIVSILTARANLGALELG 101
D+ T+V +L+A ++ G ++ G
Sbjct: 494 DDVTMVGVLSACSHTGLVDKG 514
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D++ + ++ ++ Q D A + F+ MP R + W MI G L ++F A LF++
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ T +++ I + R NL A L L D + V
Sbjct: 106 MPTRDLVSWNVMISGCVRYR-NLRAARL----------------------LFDQMPERDV 142
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W M+ G A +G +A ++F +M + +++ G+L+A N
Sbjct: 143 -VSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLAAYVQN 186
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+T +V G VD AR+ FD MPER+ + W MI GY++ RF +AL +F +++
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
I G+ F S + A G L G + +++++ + D A++DMYCKC
Sbjct: 220 ALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVE 279
Query: 131 ----------TVKFT-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T T W MI GLA+ G A+++F +M R + PD+V V VL+A
Sbjct: 280 EAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACA 339
Query: 180 H 180
H
Sbjct: 340 H 340
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V+ A F +P + W MI G R ++A+ LF E++ ++
Sbjct: 266 TAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVA 325
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYI 108
D+ T+V++LTA A+ G + G YI
Sbjct: 326 PDDVTLVNVLTACAHTGMVSDGHNYFNYI 354
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+E G N V++ A++ Y +++ A + F + +D + W T+I G+ +N ++
Sbjct: 231 IEDHGFGSNLKVVN--ALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYK 288
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNA 122
EAL LFQE+ S ++ T++S+L+A A+LGA+++G WI YIDK V N +
Sbjct: 289 EALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTS 348
Query: 123 LIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC + F +W MI G A+ G + A D+FS+M ++ I+PD
Sbjct: 349 LIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPD 408
Query: 168 EVAYVGVLSARTHN 181
++ +VG+LSA +H+
Sbjct: 409 DITFVGLLSACSHS 422
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++ V+SYTA+++GY +R AR+ FD++ +D V W MI GY+ ++E
Sbjct: 129 KVFDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKE 188
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L++E+ +N+ DE T+V++++A A +ELG + + I+ + +++ NAL+D
Sbjct: 189 ALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMD 248
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W T+I G +AL +F +MLR+ P++V
Sbjct: 249 MYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVT 308
Query: 171 YVGVLSARTH 180
+ VLSA H
Sbjct: 309 MLSVLSACAH 318
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A Q FD M R W MI G+ + A LF +++ S I
Sbjct: 347 TSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIE 406
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTV 132
D+ T V +L+A ++ G L+LG I + + ++ K+ + +ID+ +C +
Sbjct: 407 PDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCMIDLLGQCAL 460
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 110/192 (57%), Gaps = 17/192 (8%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+EI GT + +VI++T+++ GY +D AR FD + RD V WT MI GY +
Sbjct: 336 VEITGT-PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLIS 394
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+AL LF+ + + +T+ ++L+ ++L +L+ G+ + + + + + GNALI
Sbjct: 395 DALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALI 454
Query: 125 DMYCK--------------CTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY + C+ + TWT+MI+ LA G G++A+++F +MLR ++KPD
Sbjct: 455 TMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDH 514
Query: 169 VAYVGVLSARTH 180
+ YVGVLSA TH
Sbjct: 515 ITYVGVLSACTH 526
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M K S+ I+S + +D AR+ FD++P+ D V WTTMI GY + F+
Sbjct: 69 RLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKS 128
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F + +S I +FT ++L + A AL++G+ + +++ K + N+L++
Sbjct: 129 AVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLN 188
Query: 126 MYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V F TW TMI D AL +F QM PD V+
Sbjct: 189 MYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM----TDPDIVS 244
Query: 171 YVGVLSARTH 180
+ +++ H
Sbjct: 245 WNSIITGYCH 254
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 49/219 (22%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD ++ ++S ++ Q D+A FDQM + D V W ++I GY A
Sbjct: 202 VFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRA 261
Query: 67 LTLFQ-EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L F +++S++ D+FT+ S+L+A AN +L+LG+ I +I + V GNALI
Sbjct: 262 LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALIS 321
Query: 126 MYCKC-------------------TVKFT-----------------------------WT 137
MY K + FT WT
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
MIVG A +G AL +F M+R KP+ VLS
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y + AR+ F+ + RD + WT+MI + EA+ LF+++ N+
Sbjct: 452 ALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLK 511
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V +L+A ++G +E G K+Y + K ++I ++ + M
Sbjct: 512 PDHITYVGVLSACTHVGLVEQG---KSYFNLMKNVHNIEPTSS------------HYACM 556
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
I L +G ++A + M I+PD VA+ +LS+ R H
Sbjct: 557 IDLLGRAGLLEEAYNFIRNM---PIEPDVVAWGSLLSSCRVH 595
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 15/174 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++ Y E VD AR FD++ E V + MI GY R NR EAL+LF+E+Q N+ +
Sbjct: 172 LINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPN 231
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
E T++S+L++ A LG+L+LG+WI Y K+ + ALIDM+ KC
Sbjct: 232 EITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFE 291
Query: 131 TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+++ W+ MIV A G + ++ MF +M +++PDE+ ++G+L+A +H
Sbjct: 292 NMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSH 345
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD M E D V++ ++ GY R E LF EI +++ D +T S+L A A
Sbjct: 84 ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
ALE G + K V ++++ LI+MY +C + M
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A ++AL +F +M ++KP+E+ + VLS+
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSS 241
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D A F+ M +D W+ MI Y + ++ +F+ +++ N+
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQ 330
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L A ++ G +E G
Sbjct: 331 PDEITFLGLLNACSHTGLVEEG 352
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V ++ +++ Y+ +VD A + F +MP RD V WTTMI G R E
Sbjct: 199 KVFDEMLTRAVAAWNCMLAAYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAE 258
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALI 124
A+ LF ++ + + D T+V++LTA A LG LELG W+ +D + + NALI
Sbjct: 259 AVDLFWRMRKARVKDDTVTMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNALI 318
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC +WTTMI GLAI G+ +AL++F +M +PD
Sbjct: 319 HMYLKCGAIEDARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRM---QDRPDGA 375
Query: 170 AYVGVLSARTH 180
+ VL A +H
Sbjct: 376 TMLAVLRACSH 386
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 104/177 (58%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNI 78
+A+V+ Y + ARQ FD++ ++D W+ +I GY++ NR EAL LF+E+ SN+
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
+E TI+++++A A LG LE G W+ YI + + + + N+LIDM+ KC
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
Query: 131 ---TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
++ + +W +M+ G A+ G G +AL F M ++PDE+ ++GVL+A +H
Sbjct: 339 IFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSH 395
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++ M + D+ T +++ Y + AR F++M R+ V+WT+MI GY++ + E
Sbjct: 104 QVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNE 163
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L+++++ DE T+ ++++A A L L +G + ++I + +K G+AL++
Sbjct: 164 ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVN 223
Query: 126 MYCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEV 169
MY KC T + + W+ +I G + +AL +F ++ S ++P+EV
Sbjct: 224 MYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEV 283
Query: 170 AYVGVLSA 177
+ V+SA
Sbjct: 284 TILAVISA 291
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILT 90
V A F E D + W +M+ ++ N R AL + E ++ S + D FT S+L
Sbjct: 28 VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFT 135
A L ++G+ + + K + +D++ L++MY C K
Sbjct: 88 GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT+MI G + ++AL ++ +M PDEV ++SA
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSA 189
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T K V +++ + +D A++ FD M +D + W +M++G+ REAL
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQ 370
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK---NKVKNDIFAGNALIDM 126
F+ +QT+++ DE T + +LTA ++ G ++ G+ + I+ ++K++ + ++D+
Sbjct: 371 FRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYG--CMVDL 428
Query: 127 YCK 129
C+
Sbjct: 429 LCR 431
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ FD++P RD V WT MI G ++ + +++L LF ++T I D + S+L+A A+
Sbjct: 256 AKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACAS 315
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
LG L+ G W+ YI++ +K DI G A++DMY KC FTW +
Sbjct: 316 LGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNAL 375
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ GLA+ G +AL++F M+ + +KP+E+ ++ +L+A H
Sbjct: 376 LCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCH 416
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + FD+M RD V W ++I G+++ F EA+++F + M T+VS+L A A
Sbjct: 159 AGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMT---TLVSVLAACAR 215
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CTVK-------------FTWTTM 139
G L G+ I I++ + K ++ GNA++DMY K C + +WT M
Sbjct: 216 NGDLCTGKGIHGVIER-RFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIM 274
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL S + ++L++FS M I PD + VLSA
Sbjct: 275 ITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSA 312
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TAIV Y +++A + F M +R+ W ++ G EAL LF+ + S +
Sbjct: 342 TAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVK 401
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN---DIFAGNALIDMYCK 129
+E T ++ILTA + G ++ G K + + +K+ N + +ID++C+
Sbjct: 402 PNEITFLAILTACCHCGLVDEGR--KYFDNMSKLYNLLPKLEHYGCMIDLFCR 452
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ ++I+GY+ + A+++++ + + D FT +L A +N G + +
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 110 KNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALD 154
K + D + N+LI Y C V+ +W ++I G +G+ D+A+
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTHN 181
+F R ++P V VL+A N
Sbjct: 193 VF---FRMDVEPSMTTLVSVLAACARN 216
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M K+V+S+T+++S Y + AR F++MP+R+ V W +MI Y++ F+E
Sbjct: 159 ELFEKMPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQE 218
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF ++ + I D +T VS+ +A ++LG L LG I ID + + + A ALI+
Sbjct: 219 ALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAID-DFSQLGVIAATALIE 277
Query: 126 MYCKCT---------VK------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +K F W M+ LA+ G AL +FS M + +KP++
Sbjct: 278 MYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFT 337
Query: 171 YVGVLSARTH 180
++G L A +H
Sbjct: 338 FLGALFACSH 347
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + V + ++ Y + V A++ F+ M +RD V W TMI GY++V +
Sbjct: 97 KVFDEMCVRSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMK 156
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+++ N++ + S+++A A G L + + +K +N +
Sbjct: 157 ARELFEKMPEKNVV----SWTSMISAYAKAGDLATA---RMFFNKMPQRNVV-------- 201
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W +MI G+ +ALD+F+QML I PD +V V SA +H
Sbjct: 202 ---------SWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSH 247
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
VI+ TA++ Y ++ A F ++ ++D W M+ + ++AL LF +Q
Sbjct: 269 VIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQK 328
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCK 129
+ ++FT + L A ++ G +E G+ I ++K K++ I ++D+ +
Sbjct: 329 QGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSR 383
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F +M ++ S++ ++ GY++ +++ A+Q F+ MPE++ V WTT+I+G+ +
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A++ + E+ + +E+TI ++L+A + GAL G I YI N +K D G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 121 NALIDMYCKC-------TV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC TV +WT MI G A+ G +A+ F QM+ + K
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 166 PDEVAYVGVLSA 177
PDEV ++ VL+A
Sbjct: 392 PDEVVFLAVLTA 403
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 9 GTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPER----DYVLWTTMIDGYLRVN 61
T+KN D ++V Y Q+ A Q F++ P+R ++W +I+GY R
Sbjct: 151 ATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAK 210
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKNDIF 118
A TLF+ + N G W IK Y+D ++
Sbjct: 211 DMHMATTLFRSMPERNS----------------------GSWSTLIKGYVDSGELNR--- 245
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L ++ + V +WTT+I G + +G+ + A+ + +ML +KP+E VLSA
Sbjct: 246 -AKQLFELMPEKNV-VSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSA 302
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++D A F M +D + WT MI G+ RF +A+ F+++ S
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 GDEFTIVSILTARANLGALELG 101
DE +++LTA N ++LG
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLG 413
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
D + F ER+ + +I G RF ++ F + + D T +L +
Sbjct: 77 DYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSN 136
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ LG LG + KN V D F +L+DMY K
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAK 173
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 110/199 (55%), Gaps = 22/199 (11%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F M + +V+ + ++++GY+ R D AR+ FD+MPER+ WT M+ G+ + +
Sbjct: 184 ALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK----NKVKNDIFA 119
+ AL+LF +++ + + D+ +V+ L+A A LG L LG+WI Y+++ + +
Sbjct: 244 KLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSL 303
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML---R 161
NALI MY C +W+++I G A G G +A+ +F ML +
Sbjct: 304 NNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQ 363
Query: 162 ASIKPDEVAYVGVLSARTH 180
++PDE+ ++G L+A +H
Sbjct: 364 NEVRPDEITFIGALTACSH 382
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 51/207 (24%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++S YI+ + A++ F+ + +W +I G+ R ++++ LF+ + + + +
Sbjct: 65 LLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEAN 124
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
FT +L+A GE I + N ++++ LI++Y
Sbjct: 125 GFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRA 184
Query: 131 ---------TVKFTWTTMIVG-------------------------------LAISGNGD 150
+ W +++ G A +G
Sbjct: 185 LYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCK 244
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL +F QM RA ++ D+VA V LSA
Sbjct: 245 LALSLFDQMRRAGVELDQVALVAALSA 271
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 33/203 (16%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+S+TA+++GY + + AR+ FD+MPE++ V W +I GY++ R
Sbjct: 227 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRS 286
Query: 66 ALTLFQEIQ-------------TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
A +F E+ + N+ DEF +VS+++A + +G+LEL +W+ Y+ K+
Sbjct: 287 ARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSS 346
Query: 113 VKNDIFAGN---ALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALD 154
+ D+ + ALIDM KC T F ++ +M+ GL+I G G +A+
Sbjct: 347 I--DVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVS 404
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+FS+ML + PD+VA+ +L+A
Sbjct: 405 LFSRMLNEGLTPDDVAFTVILTA 427
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + VLW T I GY ++LF ++ S+ + D+FT S++ A + + +
Sbjct: 128 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 187
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF---------------TWTTMIVGL 143
+ G + V D+F +LID+Y KC +WT MI G
Sbjct: 188 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 247
Query: 144 AISGNGDKALDMFSQM 159
A + +A +F +M
Sbjct: 248 ASFSDLVEARKLFDEM 263
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D A + F++MP+RD + + +M+ G +A++LF + + D+ ILT
Sbjct: 367 SMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 426
Query: 91 ARANLGALELG 101
A + G ++ G
Sbjct: 427 ACSRAGLVDEG 437
>gi|255576546|ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531388|gb|EEF33223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 453
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
E+F M +D+ S+ +++G+I +++ +AR+ D+MPE++ V WTTMI GY++
Sbjct: 205 AFELFERMPERDLPSWNTMITGFIQNKELKLARKLLDEMPEKNVVSWTTMITGYVQEGES 264
Query: 64 REALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
AL +F E I+ +M +E T V++L A ++L L G+ + I K ++ F +A
Sbjct: 265 EAALNIFMEMIRDGGVMPNEGTFVNVLGACSDLAGLGEGQQVHQMISKTVYQDMPFVVSA 324
Query: 123 LIDMYCKC--------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
LI+MY KC T + +W M+ A G G +A+++F++M +
Sbjct: 325 LINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRALGFE 384
Query: 166 PDEVAYVGVLSARTH 180
PD+++YVG+LSA +H
Sbjct: 385 PDDISYVGLLSACSH 399
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 24/183 (13%)
Query: 14 KDVISYTAIVSGY------INREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
K+V+++TA+VSGY + E+VD AR+ FD+MP+RD + WT M+ G R R EA
Sbjct: 116 KNVVTWTAMVSGYMRLNQVLEAERVDEARRLFDEMPKRDVISWTAMVAGLARNGRIDEAR 175
Query: 68 TLFQEIQTSNIM---------GDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKN 115
+F ++ N++ +V + +L W I +I ++K
Sbjct: 176 KIFDKMPERNVVSWNAMITGYAKNMRLVEAFELFERMPERDLPSWNTMITGFIQNKELK- 234
Query: 116 DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 174
A L +M K V +WTTMI G G + AL++F +M+R + P+E +V V
Sbjct: 235 --LARKLLDEMPEKNVV--SWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNV 290
Query: 175 LSA 177
L A
Sbjct: 291 LGA 293
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+++ ARQ FD+M ERD + WTT+I GY++ EA LF ++ M + T ++++
Sbjct: 70 KINEARQVFDRMLERDVITWTTVITGYIKCRLIVEARRLFDR---ADAMKNVVTWTAMVS 126
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
L + E + L D K V +WT M+ GLA +G D
Sbjct: 127 GYMRLNQVLEAERVDE-------------ARRLFDEMPKRDV-ISWTAMVAGLARNGRID 172
Query: 151 KALDMFSQM 159
+A +F +M
Sbjct: 173 EARKIFDKM 181
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQ--MPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
+A+++ Y ++D+AR+ FD +RD V W M+ Y +EA+ LF E++
Sbjct: 323 SALINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRALG 382
Query: 78 IMGDEFTIVSILTARANLGALELG 101
D+ + V +L+A ++ G ++ G
Sbjct: 383 FEPDDISYVGLLSACSHAGLVKEG 406
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V+S T++VSGY V AR F +M ER+ V W +I GY + EA
Sbjct: 310 VFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L LF+ ++ I +T ++L A ANL L+LG ++ K+ + +D+F G
Sbjct: 370 LRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVG 429
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC +V+ +W MIVG A +G G +AL +F +ML + K
Sbjct: 430 NALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEK 489
Query: 166 PDEVAYVGVLSARTH 180
PD V +G L A +H
Sbjct: 490 PDHVTMIGALCACSH 504
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+IF M K+V S+ AIVS + +D + F MPE D W ++I G+ + +RF E
Sbjct: 75 KIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEE 134
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F ++ + +E+T S L+A A L L++G I + K++ D++ G+ALID
Sbjct: 135 ALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALID 194
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +W ++I +G +AL++F +M+ + +PDEV
Sbjct: 195 IYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVT 254
Query: 171 YVGVLSA 177
V+SA
Sbjct: 255 LASVVSA 261
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A++ Y VD A++ FD M ER+ V W ++I Y + REAL +F +
Sbjct: 185 DVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMM 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
S DE T+ S+++A A+L A + G E + ++K+++D+ NAL+DMY KC
Sbjct: 245 ESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRI 304
Query: 131 -----------------------------TVK--------------FTWTTMIVGLAISG 147
+VK +W +I G +G
Sbjct: 305 NEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNG 364
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL +F + R +I P + +L+A
Sbjct: 365 ENEEALRLFRMLKREAICPTHYTFGNLLNA 394
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ DV A++ Y+ V+ + F+ M ERDYV W MI GY + EAL LF+
Sbjct: 422 EESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFR 481
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
++ S D T++ L A ++ G ++ G
Sbjct: 482 KMLASGEKPDHVTMIGALCACSHAGLVQEG 511
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 109/190 (57%), Gaps = 20/190 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+S+T ++ GY + AR F++ P+RD + W+ +I GY + + E
Sbjct: 130 KVFDEMPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNE 189
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNA 122
A+ +F E+++ N+ DE+ +VS+++A + LG+L+L W Y+ K+ + + + A A
Sbjct: 190 AVRIFLEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVIA--A 247
Query: 123 LIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDM KC T+ +MI GL+I G ++A+ +F++ML S+ PD
Sbjct: 248 LIDMNAKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPD 307
Query: 168 EVAYVGVLSA 177
E A+ VL+A
Sbjct: 308 EAAFTVVLTA 317
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 24/172 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+S+TA+V GY+N + A + FDQMPER+ W MIDG+++
Sbjct: 68 KMFDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKAGDLLL 127
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F E+ N++ FT++ ID D+ L +
Sbjct: 128 ARKVFDEMPERNVVS--FTVM---------------------IDGYAKAGDMTTARDLFE 164
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
K V W+ +I G A +G ++A+ +F +M ++KPDE V ++SA
Sbjct: 165 RAPKRDV-IAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSA 215
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A++ F++MP+RD + + +MI G +A+ LF + +++ DE +LTA +
Sbjct: 261 AKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFTVVLTACSR 320
Query: 95 LGALELG 101
G ++ G
Sbjct: 321 GGLVDEG 327
Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
D++T S++ ++ L+ G + + V +D++ G++L+D Y KC
Sbjct: 11 DKYTYPSLIRVFSSEFRLKEGGIVHGSAIRCGVSDDVYVGSSLVDFYGKCKEILSARKMF 70
Query: 131 ---TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
T K +WT M+VG G+ A +F QM ++K
Sbjct: 71 DEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLK 110
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 102/186 (54%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF + K+++ Y +++G + + A Q FD MPE+D + WTT+I G + F+EA
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ F+E+ D+FT S+LTA AL+ G+ I YI + +++IF G+AL+DM
Sbjct: 255 VDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDM 314
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC VK+ +WT M+VG +G ++A+ +F M R I PD+
Sbjct: 315 YCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTL 374
Query: 172 VGVLSA 177
V+S+
Sbjct: 375 GSVISS 380
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y V A F +M ++ + WT M+ GY + EA+ +F ++Q + I
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+FT+ S++++ ANL +LE G + + + NALI +Y KC
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +WT ++ G A G ++ + +F ML I PD V +VGVLSA
Sbjct: 429 FHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSA 481
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 47/218 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + ++ S+ ++S Y + ++ FD MP D V W +++ GY E+
Sbjct: 62 VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISES 121
Query: 67 LTLFQ-EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ ++ ++ ++ + T ++L +N G ++LG I I K ++ +F G+ L+D
Sbjct: 122 VRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVD 181
Query: 126 MY---------------------------------CKCTVK-------------FTWTTM 139
MY C+ V+ +WTT+
Sbjct: 182 MYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTI 241
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GL +G +A+D F +M D+ + VL+A
Sbjct: 242 ITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTA 279
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y ++ A Q F +M RD V WT ++ GY + + E ++LF+ + I+
Sbjct: 411 ALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVP 470
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V +L+A + G +E G + + + ++++ + D Y T M
Sbjct: 471 DGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRI-------TPIPDHY---------TCM 514
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I L+ +G ++A + +QM PD + + +LS+
Sbjct: 515 IDLLSRAGRLEEAKNFINQM---PFSPDAIGWATLLSS 549
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+++ +V GY V A+ FD+MP RD V + +MI GY++ +EA
Sbjct: 274 LFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEA 333
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ +F +++ S++ DE T+V +L+A A LG L I YI NK + G ALID
Sbjct: 334 IGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALID 393
Query: 126 MYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +++ + W MI GLAI G G+ A DM Q+ + SIKPD++
Sbjct: 394 TYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDIT 453
Query: 171 YVGVLSARTHN 181
++GVL+A +H+
Sbjct: 454 FIGVLNACSHS 464
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 26/168 (15%)
Query: 12 KNKDVISYTAIVSGYINR-EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+ K++IS+ ++SGY R + V++A++ FD+MPE+D + W ++IDGY++ R +A +LF
Sbjct: 216 EKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLF 275
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ +++ T +++ A LG + K+ D+ ++ D+ A N
Sbjct: 276 NKMPKRDVV----TWATMVDGYAKLGFVHQA---KSLFDRMPLR-DVVAYN--------- 318
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+MI G + +A+ +F+ M + S + PDE V VLSA
Sbjct: 319 -------SMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSA 359
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 1 MGFT---LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTM 53
+GF ++I G ++ D+ ++ YI + ARQ FD+MP RD V + +M
Sbjct: 134 LGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSM 193
Query: 54 IDGYLRVNRFREALTLFQEI--QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111
IDGY++ A LF + + N++ F ++S RA+ G + +
Sbjct: 194 IDGYVKCGMIESARGLFDLMPKEKKNLISWNF-MISGYAQRAD------GVNVAKKLFDE 246
Query: 112 KVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMF 156
+ D+ + N+LID Y K TW TM+ G A G +A +F
Sbjct: 247 MPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLF 306
Query: 157 SQM-LRASIKPDEVAYVGVLSARTHN 181
+M LR D VAY +++ N
Sbjct: 307 DRMPLR-----DVVAYNSMITGYVQN 327
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL LF + + + D+F++ +L A + LG ++ G I
Sbjct: 85 DPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIH 144
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D++ N LI +Y KC
Sbjct: 145 GFLRKTGIWSDLYLQNCLIGLYIKC 169
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +IF + KD ISY +++GY V AR+ FD M ER V W MI Y
Sbjct: 147 LGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHN 206
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
E L F+ +Q +I +E T+V++L+ A LG LE+G IK YI+ N + ++
Sbjct: 207 GDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVS 266
Query: 121 NALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
A+++MY KC W+ MI G A +G ++AL++F M R +K
Sbjct: 267 TAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVK 326
Query: 166 PDEVAYVGVLSA 177
P++V V VLSA
Sbjct: 327 PNDVTLVSVLSA 338
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 15/163 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TAI+ Y+ VD AR+ FD+M +RD V W+ MI GY + R EAL LF+ ++
Sbjct: 262 NMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMR 321
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ ++ T+VS+L+A LG++E+G +I +Y++ + ++++ +AL+ MY KC
Sbjct: 322 REKVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNIS 381
Query: 131 --------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRA 162
T + TW +MIVGLA++G A+ ++ M A
Sbjct: 382 KAREVFGKTPQKDIVTWNSMIVGLAVNGFAKDAIALYRNMKEA 424
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 46/203 (22%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +V +N +D ARQ FDQ+P+ +L+ ++I Y +++ ++AL F + S+
Sbjct: 34 TVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHKDALKTFFSMHHSDTR 93
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---------- 129
FT ++ A ++L A+++G+ + + I + +++ +L+D Y K
Sbjct: 94 LSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSARKI 153
Query: 130 -------------CTVK-----------------------FTWTTMIVGLAISGNGDKAL 153
C + +W MI A +G+ ++ L
Sbjct: 154 FDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGDLNEGL 213
Query: 154 DMFSQMLRASIKPDEVAYVGVLS 176
F +M I P+E+ V +LS
Sbjct: 214 KTFERMQAEDISPNEITLVTLLS 236
Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSN 77
+A+V Y + AR+ F + P++D V W +MI G L VN F ++A+ L++ ++ ++
Sbjct: 368 SALVGMYSKCGNISKAREVFGKTPQKDIVTWNSMIVG-LAVNGFAKDAIALYRNMKEAD 425
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD+ ++T IVSGY ++ A + F QMPE++ V W+ +I GY R + EA
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F ++ I +++T S L A A++ AL+ G+ + Y+ + + + ++LIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371
Query: 127 YCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC + W TMI LA +G+G+KA+ MF+ M+ + +KPD +
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431
Query: 171 YVGVLSARTHN 181
++ +LSA +H+
Sbjct: 432 FIVILSACSHS 442
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ +++GY V+ AR+ FD+M E+D V W T++ Y + F E
Sbjct: 119 KVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNE 178
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ L+++ + ++ + F+ +L L L+L + + + +++ ++++D
Sbjct: 179 AIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVD 238
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC VK WTT++ G A G+ + A ++F QM + + V+
Sbjct: 239 AYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQM----PEKNPVS 294
Query: 171 YVGVLSARTHN 181
+ ++S N
Sbjct: 295 WSALISGYARN 305
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-E 102
++D V+W TMI + +A+ +F ++ S + D T + IL+A ++ G ++ G
Sbjct: 391 KQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLR 450
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
+ K + V D + LID+ G +++ +++
Sbjct: 451 FFKAMTYDHGVFPDQEHYSCLIDLL-------------------GRAGCFVELVNELENM 491
Query: 163 SIKPDEVAYVGVLS-ARTHN 181
S KPD+ + +L R HN
Sbjct: 492 SCKPDDRVWSALLGVCRIHN 511
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KD+ ++T IVSGY ++ A + F QMPE++ V W+ +I GY R + EA
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F ++ I +++T S L A A++ AL+ G+ + Y+ + + + ++LIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371
Query: 127 YCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC + W TMI LA +G+G+KA+ MF+ M+ + +KPD +
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431
Query: 171 YVGVLSARTHN 181
++ +LSA +H+
Sbjct: 432 FIVILSACSHS 442
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ +++GY V+ AR+ FD+M E+D V W T++ Y + F E
Sbjct: 119 KVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNE 178
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ L+++ + ++ + F+ +L L L+L + + + +++ ++++D
Sbjct: 179 AIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVD 238
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC VK WTT++ G A G+ + A ++F QM + + V+
Sbjct: 239 AYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQM----PEKNPVS 294
Query: 171 YVGVLSARTHN 181
+ ++S N
Sbjct: 295 WSALISGYARN 305
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-E 102
++D V+W TMI + +A+ +F ++ S + D T + IL+A ++ G ++ G
Sbjct: 391 KQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLR 450
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
+ K + V D LID+ G +++ +++
Sbjct: 451 FFKAMTYDHGVFPDQEHYACLIDLL-------------------GRAGCFVELVNELENM 491
Query: 163 SIKPDEVAYVGVLS-ARTHN 181
S KPD+ + +L R HN
Sbjct: 492 SCKPDDRVWSALLGVCRIHN 511
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 7/153 (4%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A F+ M +RD V ++I+G+ R EALTLF+E+ + D FT+VS+L+A A
Sbjct: 184 AHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAE 243
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------KFTWTTMIVGLAISG 147
LGALELG + Y+ K ++ + N+L+D+Y KC +WT++IVGLA++G
Sbjct: 244 LGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNG 303
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
G++AL++F +M + P E+ +VGVL A +H
Sbjct: 304 FGEEALELFREMEGQGLVPSEITFVGVLYACSH 336
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
W TM GY + AL ++++ S I D T +L A + + GE I +
Sbjct: 98 WNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 157
Query: 110 KNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALD 154
+N ++ +F N+L+ +Y C ++I G A++G +AL
Sbjct: 158 RNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALT 217
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+F +M ++PD V +LSA
Sbjct: 218 LFREMSAEGVEPDGFTVVSLLSA 240
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 44 ERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
ER+ V WT++I G L VN F EAL LF+E++ ++ E T V +L A ++ G L+ G
Sbjct: 286 ERNAVSWTSLIVG-LAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEG 343
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 98/184 (53%), Gaps = 19/184 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V ++T++VS Y R +V +AR+ FDQM ERD V WT MI GY F+EAL LF +++
Sbjct: 289 VAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEG 348
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG--NALIDMYCKC--- 130
+ DE +V+ L+A A LGALELG I I G +A++DMY KC
Sbjct: 349 LGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSI 408
Query: 131 --------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
F + ++I GLA G G+ A ++F +M +KPD + +V VLS
Sbjct: 409 DIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLS 468
Query: 177 ARTH 180
A H
Sbjct: 469 ACGH 472
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARAN--L 95
F Q+ D LW +I Y +++ + +LF+ + S+++ D FT +L A AN +
Sbjct: 72 FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLI 131
Query: 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------------------KCTVKFTWT 137
A + G + ++ +N +D+F NAL++ YC C ++
Sbjct: 132 SAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCV---SFN 188
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TMI G A G+ +F +M ++PDE +V +LS
Sbjct: 189 TMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSG 228
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 50/213 (23%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A+++ Y V A + FD+ RD V + TMI+G+ R +F E++
Sbjct: 152 DVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMR 211
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIK--TYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ DE+T V++L+ + L +G + Y + ++ N L+DMY KC
Sbjct: 212 GVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGR 271
Query: 131 ---------TVK-------------------------------------FTWTTMIVGLA 144
VK +WT MI G +
Sbjct: 272 LVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYS 331
Query: 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G +AL++F ++ +KPDEVA V LSA
Sbjct: 332 HAGCFQEALELFVKLEGLGMKPDEVAVVAALSA 364
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ +DV+S+ ++S + Q+ A F+ MP++ V WT M+ GY V +
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+ +QT D+ +IV++L A A LGALELG WI Y ++ + NAL++
Sbjct: 235 AVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEV 169
MY KC +W+T+I GLA G +A+ +F++M + ++P+ +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 170 AYVGVLSA 177
+VG+LSA
Sbjct: 355 TFVGLLSA 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 53/200 (26%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-------QTSNIMGDEF 83
+V A + F Q+ + + L MI Y + ++ R+A+ ++ + + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC--------------- 128
T +L A ALELG+ + T++ ++ + N+LI+MY
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 ----------------------KCTVKF---------TWTTMIVGLAISGNGDKALDMFS 157
K T F TWT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 158 QMLRASIKPDEVAYVGVLSA 177
M +PD+V+ V VL A
Sbjct: 241 SMQTEGFEPDDVSIVAVLPA 260
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 103/188 (54%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ +DV+S+ ++S + Q+ A F+ MP++ V WT M+ GY V +
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+ +QT D+ +IV++L A A LGALELG WI Y ++ + NAL++
Sbjct: 235 AVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEV 169
MY KC +W+T+I GLA G +A+ +F++M + ++P+ +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 170 AYVGVLSA 177
+VG+LSA
Sbjct: 355 TFVGLLSA 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 53/200 (26%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-------QTSNIMGDEF 83
+V A + F Q+ + + L MI Y + ++ R+A+ ++ + + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC--------------- 128
T +L A ALELG+ + T++ ++ + N+LI+MY
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 ----------------------KCTVKF---------TWTTMIVGLAISGNGDKALDMFS 157
K T F TWT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 158 QMLRASIKPDEVAYVGVLSA 177
M +PD+V+ V VL A
Sbjct: 241 SMQTEGFEPDDVSIVAVLPA 260
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 15/174 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++ Y E VD AR FD++ E V + MI GY R NR EAL+LF+E+Q + +
Sbjct: 170 LINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPN 229
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
E T++S+L++ A LG+L+LG+WI Y K+ + ALIDM+ KC
Sbjct: 230 EITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFE 289
Query: 131 TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+++ W+ MIV A G +K++ MF +M +++PDE+ ++G+L+A +H
Sbjct: 290 KMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+ M E D V++ +M GY R E +LF EI I+ D +T S+L A A
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
ALE G + K + ++++ LI+MY +C + M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A ++AL +F +M +KP+E+ + VLS+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS 239
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D A F++M +D W+ MI Y + +++ +F+ +++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L A ++ G +E G
Sbjct: 329 PDEITFLGLLNACSHTGRVEEG 350
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 109/192 (56%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +++ K+V+S+ +++ GY ++ +A++ F+ M E+D W+++IDGY++ + E
Sbjct: 170 KVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSE 229
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F+++Q++ +E T+VS+ A A++GALE G I YI N + + +L+D
Sbjct: 230 AMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVD 289
Query: 126 MYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
MY KC T W +I GLA G +++L +F +M I PDE
Sbjct: 290 MYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDE 349
Query: 169 VAYVGVLSARTH 180
V Y+ +L+A H
Sbjct: 350 VTYLCLLAACAH 361
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 46/218 (21%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G ++ IS S N ++ + + F Q+ W T+I GY ++L+
Sbjct: 41 GLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLS 100
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F ++ + D T ++ A A L E G + +I K ++D F N+LI MY
Sbjct: 101 IFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYA 160
Query: 129 KCTVKF----------------------------------------------TWTTMIVG 142
C +W+++I G
Sbjct: 161 ACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDG 220
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+G +A+ +F +M A K +EV V V A H
Sbjct: 221 YVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAH 258
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
+ D ++W +I G E+L LF+E+Q I DE T + +L A A+ G
Sbjct: 311 QTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGG 363
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 55/227 (24%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD + W TMIDGY ++ +
Sbjct: 226 KLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQ 285
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF +I + S++ DE T+V +L+A A
Sbjct: 286 AKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIA 345
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKC-TVKFT------------- 135
LG L + YI VK F G ALIDMY KC +++
Sbjct: 346 QLGRLSKAMDMHFYI----VKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNID 401
Query: 136 -WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
W +I GLAI G G A DM Q+ R SIKPD++ ++GVL+A +H+
Sbjct: 402 HWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHS 448
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 28/176 (15%)
Query: 6 EIFGTMKN--KDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M K++IS+ ++SGY + V+IA + F +MPE+D + W +MIDGY++ R
Sbjct: 192 ELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGR 251
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A LF + +++ T +++ A LG + KT D+ D+ A N
Sbjct: 252 IEDAKDLFDVMPRRDVI----TWATMIDGYAKLGFIHQA---KTLFDQIP-HRDVVAYN- 302
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+M+ G + +AL++F +M + S + PDE V VLSA
Sbjct: 303 ---------------SMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSA 343
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 26/183 (14%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ ++ Y+ + +RQ FD+MP+RD V + +MIDGY++ A LF
Sbjct: 139 DLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELF---- 194
Query: 75 TSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
++M E ++S + G I + + + D+ + N++ID Y K
Sbjct: 195 --DLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRI 252
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
TW TMI G A G +A +F Q+ D VAY +++
Sbjct: 253 EDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHR----DVVAYNSMMAGY 308
Query: 179 THN 181
N
Sbjct: 309 VQN 311
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 9 GTMKNKDVISYTAIVSGYINREQV-DIARQCFDQ-----MP---ERDYVLWTTMIDGYLR 59
G +KN ++ + + R+ + + AR F++ +P D LW +I +
Sbjct: 23 GVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYSLPYGETEDPFLWNAVIKSHSH 82
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R +L LF + + + D+F++ +L A + LG ++ G I ++ K + +D+F
Sbjct: 83 GTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIHGFLRKTGLWSDLFL 142
Query: 120 GNALIDMYCKC 130
N LI +Y KC
Sbjct: 143 QNCLIGLYLKC 153
>gi|242042285|ref|XP_002468537.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
gi|241922391|gb|EER95535.1| hypothetical protein SORBIDRAFT_01g047570 [Sorghum bicolor]
Length = 495
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 27/202 (13%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + +++S+ A++ GY + ARQ F +MP+RD V W+ MIDG ++ REA
Sbjct: 117 VFDEIPRPNLVSWNALLDGYAKCRDLPAARQVFARMPQRDVVSWSAMIDGCVKCGEHREA 176
Query: 67 LTLFQEIQTS----------NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
L LF+ ++ + ++ T+VS+L A ANLG LE G W+ + + +
Sbjct: 177 LALFEMMENAAARSVEDGGGGARANDVTMVSVLGACANLGDLERGRWVHRCLRERGFPLN 236
Query: 117 IFAGNALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+ +L+DMY KC T W +I GLA+ G +++++F +M
Sbjct: 237 LKLATSLVDMYAKCGAIHEALEMFWAVPVESTDVLIWNAVIGGLAVHGMATESVEIFQEM 296
Query: 160 LRASIKPDEVAYVGVLSARTHN 181
A + PDE+ Y+ +LSA H
Sbjct: 297 QCAGVAPDEITYLCLLSACVHG 318
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+++ A+++GY+ V +AR+ FD MP RD V W+T++ GY++ AL +F+ +
Sbjct: 195 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNM 254
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ +E IV+ L+A A LG LE G+++ I + V + G AL+DMY KC
Sbjct: 255 VVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSV 314
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F W +MI GLA G G A+ +F + + P + +VGVL+A
Sbjct: 315 AAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNA 373
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 303 ALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 362
Query: 81 DEFTIVSILTARANLGALELGEW-IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T V +L A + G ++ G W K +K +++++ ++D+
Sbjct: 363 TNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDL------------- 409
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L+ +G +A+++ M I PD V + VLSA
Sbjct: 410 ---LSRAGLVQEAIELIEGM---HIPPDPVLWGTVLSA 441
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +D Y A++S Y VD A + F++MP+R+ V WT M+ GY + R E
Sbjct: 143 KVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEE 202
Query: 66 ALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ F E+ + + + +E T+ S+L A A +GA+ELG ++ Y + +++ NAL+
Sbjct: 203 AVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALL 262
Query: 125 DMYCKC-TVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+MY KC +++ +W +MI+ A+ G +AL +F ++ A +KPD
Sbjct: 263 EMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDG 322
Query: 169 VAYVGVLSARTH 180
+ +VGV+ A TH
Sbjct: 323 ITFVGVILACTH 334
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M + V ++ ++S Y+ +VD A F +MP RD V WTT+I G
Sbjct: 205 LGDAGKVFDEMPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANA 264
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI-FA 119
R EA+ LF ++ + + D T+V++LTA A LG L+LG W+ +D++ I
Sbjct: 265 GRAAEAVDLFWRMRKARVKDDAVTMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVLL 324
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NALI MY +C +WTTMI GLAI G ++AL++F +M
Sbjct: 325 DNALIHMYVRCGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRM---EE 381
Query: 165 KPDEVAYVGVLSARTHN 181
+PD + VL A +H+
Sbjct: 382 RPDGATLLAVLWACSHS 398
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++KD++ + +V+ Y +++ AR D+ PE+D V W T+I GY +E
Sbjct: 184 QLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKE 243
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL + E++ +M DE TIVS+L+ ANLG+L G I + + + I GNAL+
Sbjct: 244 ALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVS 303
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +K +TW ++I GLA G ++++ F++ML + P+E++
Sbjct: 304 MYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEIS 363
Query: 171 YVGVLSARTH 180
++ VL A +H
Sbjct: 364 FLCVLGACSH 373
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D AR+ FD + D + M+ GY A L++ I+ + + D FT +L A
Sbjct: 47 MDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRA 106
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
A L G + + K D F NALI+M+ KC
Sbjct: 107 CAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKC 145
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
++ A+VS Y V A + F +M ERD W ++I G + +++ F ++
Sbjct: 295 ILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLD 354
Query: 76 SNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDM 126
+ +E + + +L A ++ G +E G+ + I++ +++ + + ++DM
Sbjct: 355 EGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDM 406
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KD A+++ + + +A D+ ERD V + +I G+ A LF E
Sbjct: 130 KDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGELDIARQLFDEC 189
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
Q +++ + A A G +E + +D+ K+ +
Sbjct: 190 QHKDLVCWNVMV----AAYAKYGEMEKA---RGLLDRAPEKDVV---------------- 226
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W T+I G G +AL++ +M + PDE V +LS
Sbjct: 227 -SWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSC 269
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W MIDGY ++ E
Sbjct: 249 KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHE 308
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S++ DE ++V +L+A A
Sbjct: 309 AKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXA 368
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + + G ALIDMY KC +++ W
Sbjct: 369 QLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNA 428
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLA+ G G+ A DM Q+ R SIKPD + +VGVL+A +H+
Sbjct: 429 MIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 471
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 38/181 (20%)
Query: 6 EIFGTM--KNKDVISYTAIVSGYINR-EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+FG M + +++I++ +++ GY R + V++A + FD+MPE+D + W +MI GY++ R
Sbjct: 215 ELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGR 274
Query: 63 FREALTLF-----QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
+A LF +++ T IM D + G L L KT D+ ++ +
Sbjct: 275 IEDAKGLFDVMPRRDVVTWAIMIDGY------------GKLGLVHEAKTLFDQMPHRDVV 322
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 176
+ +M+ G + +AL++F+ M + S + PDE + V VLS
Sbjct: 323 -----------------VYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLS 365
Query: 177 A 177
A
Sbjct: 366 A 366
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 28/184 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF---- 70
D+ ++ YI + ARQ FD+MP+RD V + +MIDGYL+ A LF
Sbjct: 162 DLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMP 221
Query: 71 ---QEIQTSNIM-------GDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKNDI 117
+ + T N M D + + L + +L W I Y+ ++++
Sbjct: 222 REKRNLITWNSMIGGYAQRADGVNVAAKLFDE--MPEKDLISWNSMIGGYVKHGRIED-- 277
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L D+ + V TW MI G G +A +F QM D V Y ++S
Sbjct: 278 --AKGLFDVMPRRDV-VTWAIMIDGYGKLGLVHEAKTLFDQMPHR----DVVVYNSMMSG 330
Query: 178 RTHN 181
N
Sbjct: 331 XVQN 334
Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL L + + + D+F+ L A + LG ++ G +
Sbjct: 92 DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K +D+F N LI +Y KC
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKC 176
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF ++ K V+S+T ++ + E ++ R+ F +MPER+ V WT M+ GYL RE
Sbjct: 168 IFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREV 227
Query: 67 LTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNKVK-------NDIF 118
L L E+ G F T+ S+L+A A G L +G W+ Y K ++ +D+
Sbjct: 228 LELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVM 287
Query: 119 AGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G AL+DMY KC TW + GLA+ G G +DMF QM+R
Sbjct: 288 VGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-E 346
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPD++ + VLSA +H+
Sbjct: 347 VKPDDLTFTAVLSACSHS 364
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
A+ Y + ++ A++ FD++P E+D V WTT++ + R ++ LF E++ +
Sbjct: 48 ALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV 107
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
D+ ++V + A L L + K V + NAL+DMY KC
Sbjct: 108 EIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKC 159
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M+ K+V+ +++G + + V AR F+ + ERD + WTTM+ G +
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQN 255
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
EAL +F+ ++ + D++T SILTA L ALE G+ I YI + ++++F G
Sbjct: 256 GLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVG 315
Query: 121 NALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL+DMY KC +V+ +WT MIVG +G G++A+ +FS+M R IK
Sbjct: 316 SALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIK 375
Query: 166 PDEVAYVGVLSA 177
PD+ V+S+
Sbjct: 376 PDDFTLGSVISS 387
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 15/183 (8%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T +V +A+V Y V +A F +M ++ + WT MI GY + EA+ +
Sbjct: 306 TCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRV 365
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
F E+Q I D+FT+ S++++ ANL +LE G + ++ + NAL+ +Y K
Sbjct: 366 FSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGK 425
Query: 130 CTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C + +WT +++G A G + +D+F +ML +KPD V ++GV
Sbjct: 426 CGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGV 485
Query: 175 LSA 177
LSA
Sbjct: 486 LSA 488
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y ++ A + FD+M D V WT ++ GY + + +E + LF+++ + +
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKP 477
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T + +L+A + G ++ G ++Y + +DI L D Y T MI
Sbjct: 478 DGVTFIGVLSACSRSGLVDKG---RSYFHSMQQDHDIV---PLDDHY---------TCMI 522
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ SG +A + QM R PD + +LSA
Sbjct: 523 DLYSRSGWLKQAEEFIKQMPRC---PDAFGWATLLSA 556
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 48/220 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M +++++ +++S V + F +P+RD V + ++ G+ R
Sbjct: 67 RVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHAR 126
Query: 66 ALTLFQEI--QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
A + + + + T+ ++ + LG LG + I + F G+ L
Sbjct: 127 AAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPL 186
Query: 124 IDMYCK-------------------------------CTV---------------KFTWT 137
+DMY K C + TWT
Sbjct: 187 VDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWT 246
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TM+ GL +G +ALD+F +M + D+ + +L+A
Sbjct: 247 TMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTA 286
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + +D Y A++S Y VD A + F++MP+R+ V WT M+ GY + R E
Sbjct: 143 KVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEE 202
Query: 66 ALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ F E+ + + + +E T+ S+L A A +GA+ELG ++ Y + +++ NAL+
Sbjct: 203 AVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALL 262
Query: 125 DMYCKC-TVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+MY KC +++ +W +MI+ A+ G +AL +F ++ A +KPD
Sbjct: 263 EMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDG 322
Query: 169 VAYVGVLSARTH 180
+ +VGV+ A TH
Sbjct: 323 ITFVGVILACTH 334
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 107/182 (58%), Gaps = 15/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ ++++ Y + + + + FD+MP RD V WT +I GY R+ +AL F+++Q
Sbjct: 143 DIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQ 202
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ ++ + T+V+ L+A A+ GALE+G WI +I ++ + D+ G +LIDMY KC
Sbjct: 203 YAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIE 262
Query: 131 -------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
++K FTW ++I GLA++ +G +A+ F +M + IK DEV + VL A +
Sbjct: 263 EGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACS 322
Query: 180 HN 181
H+
Sbjct: 323 HS 324
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F + + ++I + + +++ + +++I+ + FT +L + A+ L
Sbjct: 66 FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGL 125
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGL 143
G+ I T++ K +DI+ N+L+++Y C +WT +I G
Sbjct: 126 SEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGY 185
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ D AL F QM A + P+ V V LSA
Sbjct: 186 RSAERYDDALIAFEQMQYAGVVPNHVTMVNALSA 219
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 95/266 (35%), Gaps = 94/266 (35%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP----------------- 43
MG + +F M ++DV+S+T +++GY + E+ D A F+QM
Sbjct: 160 MGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSA 219
Query: 44 ----------------------ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-- 79
E D +L T++ID Y + R E L +F+ ++ N+
Sbjct: 220 CADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTW 279
Query: 80 -----------------------------GDEFTIVSILTARANLGALELGEWIKTYIDK 110
DE T++++L A ++ G +++G I +
Sbjct: 280 NSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFGSLMN 339
Query: 111 NKVKNDIFAG----NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGD 150
K + F G +ID+ + + K W + G +GD
Sbjct: 340 GKY--EFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAG--CRAHGD 395
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLS 176
L F+ ++P AY +LS
Sbjct: 396 LELSEFAARKLVELEPGNGAYYVLLS 421
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +V ARQ FD+ PE+ W MI GY + A++LFQE+ +
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLS 412
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ T+ SIL+A A LGAL +G+W+ I +++++++ AL+DMY KC
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TW MI G + G+G +AL +F +ML++ I P V ++ +L A +H+
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+AIV Y + ++AR+ FD MPERD VLW TMI G+ R + F +++ +F ++ +
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D T+ ++LTA A L LG I+ K + +D++ LI +Y KC
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
++ MI G + + A+ +F ++L + + + VG++
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 1 MGFTLEIFGTMK--NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G ++ + K + DV T ++S Y + R FDQ+ + D + + MI GY
Sbjct: 232 LGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYT 291
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ A+TLF+E+ S + T+V ++ L+L I+ K +
Sbjct: 292 FNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS 351
Query: 119 AGNALIDMYCKCT-VKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
AL +YC+ V+F +W MI G +G D+A+ +F +M+
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQ 410
Query: 164 IKPDEVAYVGVLSA 177
+ P+ V +LSA
Sbjct: 411 LSPNPVTVTSILSA 424
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D+ S T + + + V RQ F+++ + D L+ +I G+ + ++ L+ +
Sbjct: 45 DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ +N+ D FT ++A + L +G + + + V +++F G+A++D+Y K T
Sbjct: 105 KKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W TMI G + + + ++ +F ML + D VL+A
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + ARQ FD M +++ V W MI GY +EAL LF E+ S I
Sbjct: 454 TALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIP 513
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T +SIL A ++ G + G N+IF +++ + Y + + M
Sbjct: 514 PTGVTFLSILYACSHSGLVSEG-------------NEIF--HSMANNYGFQPMSEHYACM 558
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ L +G AL+ +M ++P + +L A
Sbjct: 559 VDILGRAGQLTNALEFIERM---PLEPGPAVWGALLGA 593
>gi|357432702|gb|AET79028.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432706|gb|AET79030.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDXARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +V ARQ FD+ PE+ W MI GY + A++LFQE+ +
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLS 412
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ T+ SIL+A A LGAL +G+W+ I +++++++ AL+DMY KC
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TW MI G + G+G +AL +F +ML++ I P V ++ +L A +H+
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+AIV Y + ++AR+ FD MPERD VLW TMI G+ R + F +++ +F ++ +
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D T+ ++LTA A L LG I+ K + +D++ LI +Y KC
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
++ MI G + + A+ +F ++L + + + VG++
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIP 323
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 1 MGFTLEIFGTMK--NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G ++ + K + DV T ++S Y + R FDQ+ + D + + MI GY
Sbjct: 232 LGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYT 291
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ A+TLF+E+ S + T+V ++ L+L I+ K +
Sbjct: 292 FNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPS 351
Query: 119 AGNALIDMYCKCT-VKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRAS 163
AL +YC+ V+F +W MI G +G D+A+ +F +M+
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQ 410
Query: 164 IKPDEVAYVGVLSA 177
+ P+ V +LSA
Sbjct: 411 LSPNPVTVTSILSA 424
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D+ S T + + + V RQ F+++ + D L+ +I G+ + ++ L+ +
Sbjct: 45 DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+ +N+ D FT ++A + L +G + + + V +++F G+A++D+Y K T
Sbjct: 105 KXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W TMI G + + + ++ +F ML + D VL+A
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + ARQ FD M +++ V W MI GY +EAL LF E+ S I
Sbjct: 454 TALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIP 513
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T +SIL A ++ G + G N+IF +++ + Y + + M
Sbjct: 514 PTGVTFLSILYACSHSGLVSEG-------------NEIF--HSMANNYGFQPMSEHYACM 558
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ L +G AL+ +M ++P + +L A
Sbjct: 559 VDILGRAGQLTNALEFIERM---PLEPGPAVWGALLGA 593
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 110/199 (55%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISY--TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
+G +E F D+ S+ +A++ Y + AR+ FD+M ++D V W MI GY
Sbjct: 245 LGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ EA+ LF ++ S + D+ T+V +L+A A++GAL+ G+W+ TY + ++NDI+
Sbjct: 305 QNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIY 364
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-- 161
ALIDMY KC + +W MI LA G ++L +F +M +
Sbjct: 365 VSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEG 424
Query: 162 ASIKPDEVAYVGVLSARTH 180
+++P++++++GVLSA H
Sbjct: 425 GAVRPNDISFIGVLSACVH 443
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 100/172 (58%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++++ Y ++ AR+ FD++ E+D V W +MI GY R+ +A+ LF E++ +
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEP 225
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
DE T+VSIL A +LG L LG WI+ ++ +N++ + F G+ALI MY KC
Sbjct: 226 DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVF 285
Query: 131 --TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
VK TW MI G A +G D+A+ +FS M + + PD++ VGVLSA
Sbjct: 286 DRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSA 337
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV-NRFREALTLFQEIQTSNIMGDEFT 84
+I+ + + A F Q+P + + MI G +F + + +++ I + FT
Sbjct: 69 FIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFT 128
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------------ 132
+ A ANL L G+ + + K+ + D ++LI MY +C
Sbjct: 129 YPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEIS 188
Query: 133 ---KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI G + G A+ +F +M A +PDE+ V +L A
Sbjct: 189 EKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGA 236
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M N+D++S+ ++ GY +VDIAR FD+MPERD V + M+ GY++ EA
Sbjct: 280 LFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEA 339
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F +Q+ N + D T++ L+A A LG ++ G I +I++ D G ALID
Sbjct: 340 LGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALID 399
Query: 126 MYCKC-----------TVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +K W +I GLAI G G+ A D +M R ++PD++
Sbjct: 400 MYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDIT 459
Query: 171 YVGVLSARTH 180
++G+L+A H
Sbjct: 460 FIGLLNACGH 469
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 10 TMKNKDVISYTAIVSGYINREQ-VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
++ +++IS+ +++ GY E + +A Q F +MPERD + W +MIDG ++ R +A
Sbjct: 220 PLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQG 279
Query: 69 LFQEIQTSNIM 79
LF + +I+
Sbjct: 280 LFDRMPNRDIV 290
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 5 LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
++I G +K D+ ++S Y+ + A Q FD+MP+RD V + +MIDGY++
Sbjct: 147 MQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKG 206
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R A +F I +E ++S + E G + + + D+ +
Sbjct: 207 GRIDLARVVFDCIPL-----EERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISW 261
Query: 121 NALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N++ID KC +W MI G A +G D A +F +M +
Sbjct: 262 NSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEM----PE 317
Query: 166 PDEVAYVGVLSARTHN 181
D VAY ++ N
Sbjct: 318 RDVVAYNAMMGGYVQN 333
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
LW +I Y + +EA+ L + + D+FT+ +L A + +G ++ G I +
Sbjct: 94 LWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 109 DKNKVKNDIFAGNALIDMYCKC 130
K + +D+F N LI Y KC
Sbjct: 154 KKLEFGSDLFLQNCLISFYVKC 175
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 6/180 (3%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+ +V GY ++DIAR FD+MPERD + M+ GY++ EA
Sbjct: 331 LFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEA 390
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L F + + + T++ L+A A LG + G + YI+ N G ALID
Sbjct: 391 LXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALID 450
Query: 126 MYCKC-----TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
MY KC + W +J GLAI G G+ A ++F +M + +KPB++ ++GVL+A H
Sbjct: 451 MYAKCGSIDNALIDHWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNH 510
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+G ++F M +D +S+ +++ GY+ V AR+ FD MP +++ + W +MI GY
Sbjct: 229 LGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYA 288
Query: 59 RVNR-FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R R A LF+E+ +++ + S++ G +E + + K V
Sbjct: 289 RSEEGLRVAWELFEEMPKRDLI----SWNSMIDGCVKCGKMENAHHLFNXMPKRDV---- 340
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+W M+ G A G D A +F +M
Sbjct: 341 ----------------VSWANMVDGYAKLGEIDIARGLFDEM 366
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
LW +I + EA +F + + + D+F+ +L A + LG ++ G I +
Sbjct: 145 LWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 204
Query: 109 DKNKVKNDIFAGNALIDMYCKC 130
++ +D+F N L+ +Y +C
Sbjct: 205 GXMEIGSDVFLQNCLMCLYLRC 226
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+++ ++ GY V +A+ FDQMP RD V + +M+ GY++ EA
Sbjct: 259 LFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEA 318
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++ S++ DE ++V +L+A A LG L + YI + + G ALID
Sbjct: 319 LEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALID 378
Query: 126 MYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +++ W MI GLA+ G G+ A DM Q+ R SIKPD +
Sbjct: 379 MYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHIT 438
Query: 171 YVGVLSARTHN 181
+VGVL+A +H+
Sbjct: 439 FVGVLNACSHS 449
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 32/178 (17%)
Query: 6 EIFGTM--KNKDVISYTAIVSGYINR-EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M + +++I++ +++ GY R + VD+A + FD+MPE+D + W +MI GY++ R
Sbjct: 193 ELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGR 252
Query: 63 FREALTLFQEIQTSNIMG--DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+A LF N+M D T ++ LG + + KT D+ + D+ A
Sbjct: 253 IEDAKGLF------NVMPRRDVVTWAIMIDGYGKLGLVHVA---KTLFDQMPHR-DVVAY 302
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
N+++ Y + +AL++F+ M + S + PDE + V VLSA
Sbjct: 303 NSMMSGYVQNRYHM----------------EALEVFNHMEKESHLTPDETSLVIVLSA 344
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
D+ ++ YI + ARQ FD+MPERD V + +MIDGY++ A LF
Sbjct: 140 DLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELF 195
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL L + S++ D+F++ L A + LG ++ G +
Sbjct: 70 DPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVH 129
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGD 150
++ K +D+F N LI +Y KC ++ +MI G G +
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189
Query: 151 KALDMFSQMLR 161
A ++F M R
Sbjct: 190 SAGELFDLMPR 200
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +++ AR+ FD+ PE+ W MI GY + +A++LF+E+Q S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ TI IL+A A LGAL LG+W+ + ++ I+ ALI MY KC
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TW TMI G + G G +AL++F +ML + I P V ++ VL A +H
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMG 80
IV Y +V+ AR+ FD+MPE+D +LW TMI GY + + E++ +F++ I S
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T++ IL A A L L LG I + K + + I +Y KC
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKC---------- 269
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ M S + R KPD VAY ++ T N
Sbjct: 270 ----------GKIKMGSALFREFRKPDIVAYNAMIHGYTSN 300
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + AR+ FD M +++ V W TMI GY + +EAL +F E+ S I
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKFTWTT 138
T + +L A ++ G ++ G ++IF N++I Y + +VK +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEG-------------DEIF--NSMIHRYGFEPSVKH-YAC 562
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
M+ L +G+ +AL M SI+P + +L A R H
Sbjct: 563 MVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGACRIHK 603
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +S Y ++ + F + + D V + MI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------- 131
T+VS++ G L L I Y K+ + AL +Y K
Sbjct: 320 LRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G +G + A+ +F +M ++ P+ V +LSA
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 107/187 (57%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+ F M K+V+ Y +++G + +++ +RQ F M E+D + WT MI G+ + RE
Sbjct: 198 QAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDRE 257
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ LF+E++ N+ D++T S+LTA + AL+ G+ + YI + +++IF G+AL+D
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVD 317
Query: 126 MYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC ++K +WT M+VG +G ++A+ +F M I+PD+
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377
Query: 171 YVGVLSA 177
V+S+
Sbjct: 378 LGSVISS 384
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y + + A F +M ++ V WT M+ GY + EA+ +F ++Q + I
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+FT+ S++++ ANL +LE G + + + I NAL+ +Y KC
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +WT ++ G A G ++ L +F ML KPD+V ++GVLSA
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSA 485
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 93/250 (37%), Gaps = 78/250 (31%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
I +N ++ +VS Y +++ AR+ FDQMP+R+ W T++ Y ++ E
Sbjct: 34 HIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPE 93
Query: 66 ALTLFQEIQTSNIM----------GDEFTIVSI----------------------LTARA 93
+F + T +++ G F + S+ L +
Sbjct: 94 MERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILAS 153
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF------------------- 134
G + LG + ++ K ++ +F G+ L+DMY K + F
Sbjct: 154 KQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNT 213
Query: 135 ---------------------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
+WT MI G +G +A+D+F +M +++ D
Sbjct: 214 LIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMD 273
Query: 168 EVAYVGVLSA 177
+ + VL+A
Sbjct: 274 QYTFGSVLTA 283
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y ++ + + F +M D V WT ++ GY + + E L LF+ +
Sbjct: 415 ALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D+ T + +L+A + G ++ G N IF ++I + ++ +T MI
Sbjct: 475 DKVTFIGVLSACSRAGLVQKG-------------NQIF--ESMIKEHRIIPIEDHYTCMI 519
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ +G ++A ++M PD + + +LS+ R H
Sbjct: 520 DLFSRAGRLEEARKFINKM---PFSPDAIGWASLLSSCRFH 557
>gi|357432692|gb|AET79023.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432694|gb|AET79024.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432698|gb|AET79026.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432700|gb|AET79027.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432704|gb|AET79029.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 15/170 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++ +S+ ++ G + +V A FDQM ERD + WT+MI G+++ F +A
Sbjct: 149 MFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQA 208
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q + + D TI+S+L A ANLGAL LG WI ++ K K++I N+LIDM
Sbjct: 209 LEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDM 268
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR 161
Y +C +W +MIVG A++G+ ++AL+ F+ M +
Sbjct: 269 YSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRK 318
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 49/184 (26%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN--LGALEL 100
P V WT+ I + R + EA F +Q + + + T +++L+A + L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 101 GEWIKTYIDKNKVKND-IFAGNALIDMYCKC----------------------------- 130
G I Y+ K + + + G AL+DMY KC
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 131 --------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
V F +WT+MI G G ++AL+ F +M A ++PD V +
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 174 VLSA 177
VL+A
Sbjct: 230 VLAA 233
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VIS+TA++ GY+ ++ AR+ F M RD V WT MI GY + R EA+ LF+ +
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----- 129
T + +T+ ++L+ A+L L+ G+ I ++ ++ NA+I MY +
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 483
Query: 130 ---------CTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
C K TWT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSA
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 179 TH 180
+H
Sbjct: 544 SH 545
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 49/219 (22%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V S+ A+VS + ++D+A F+ MP+R V W MI GY + +A
Sbjct: 221 VFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKA 280
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF + S++ DEFTI S+L+A ANLG + +G+ + YI + ++ + NALI
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 340
Query: 126 MYCKC-------------------TVKFT-----------------------------WT 137
Y K + FT WT
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 400
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
MIVG +G D+A+D+F M+ +P+ VLS
Sbjct: 401 AMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS 439
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 47/214 (21%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+ ++V ++ +++S + ++ AR F +MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ +FT+ ++L++ A A +G + +++ K + + + N++++MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 131 ------TVKF----------------------------------------TWTTMIVGLA 144
T F +W MI G
Sbjct: 213 GDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYN 272
Query: 145 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+G KAL +FS+ML +S+ PDE VLSA
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
AI++ Y AR+ FDQ+ R + + WT+MI + + EA+ LF+E+ + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V +L+A ++ G + G K Y D ++KN+ + C M
Sbjct: 531 PDRITYVGVLSACSHAGFVNEG---KRYYD--QIKNEHQIAPEMSHYAC----------M 575
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ LA +G +A + +M ++PD +A+ +LSA R H
Sbjct: 576 VDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACRVH 614
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++V Y D A++ FD+MP R+ V WT +I GY++ F + + +F+E+
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
S++ +E T+ S+L+A A++GAL G + Y+ KN ++ + AG LID+Y KC
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TWT MI G A G A D+F ML + + P+EV ++ VLSA
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 180 H 180
H
Sbjct: 419 H 419
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D +++SGY + D A + FD ++D V WT MIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIK-TYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY KC+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
TWT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 177 ARTH 180
A H
Sbjct: 315 ACAH 318
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ ++ A F+++ E++ WT MI+G+ R+A LF + +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T +++L+A A+ G +E G
Sbjct: 405 PNEVTFMAVLSACAHGGLVEEG 426
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M ++ +S+ A++ GY +D ARQ F+ MP+RD V W++MIDG ++
Sbjct: 163 IGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKG 222
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ AL +F+ ++ +E T+VS+L A A+LGALE G + Y+ N ++ +
Sbjct: 223 GEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLR 282
Query: 121 NALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+L+DMY KC T W T+I GLA G ++L++F +M
Sbjct: 283 TSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLG 342
Query: 164 IKPDEVAYVGVLSARTH 180
I PDE+ Y+ + SA H
Sbjct: 343 IVPDEITYLCLFSACAH 359
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
++S++AI S +D + + F Q+P W ++I G+ + ++++F ++
Sbjct: 50 LLSFSAISSW----GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLR 105
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----- 130
+ D T I A A L L L + I K + D F N+LI MY C
Sbjct: 106 FGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 165
Query: 131 ----------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+W M+ G A G+ D A +F M
Sbjct: 166 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESM 204
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
T+++ Y ++ A F +P + D ++W T+I G E+L LF+E+Q
Sbjct: 283 TSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLG 342
Query: 78 IMGDEFTIVSILTARANLG 96
I+ DE T + + +A A+ G
Sbjct: 343 IVPDEITYLCLFSACAHGG 361
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 22/189 (11%)
Query: 14 KDVISYTAIVSG-------YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ V S+T ++G ++ + +IA++ F +MP+RD V W +MI GY+R +F EA
Sbjct: 70 RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L FQ + +SN+ D+FT S++TA A LGAL +W+ + + +++ + +ALIDM
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDM 189
Query: 127 YCKC----TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T K W ++I GLA+ G A+ +FS+M ++ PD + +
Sbjct: 190 YSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTF 249
Query: 172 VGVLSARTH 180
+G+L A +H
Sbjct: 250 LGILKACSH 258
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y +++ A++ F+ + D +W ++I+G +A+ +F +++ N++
Sbjct: 184 SALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVL 243
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T + IL A ++ G ++ G + Y D + + ++ ++ Y M
Sbjct: 244 PDSLTFLGILKACSHCGLVKEG---RKYFD---LMENYYSIKPQLEHY---------GAM 288
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ L +G D+A M + M ++PD + + +LSA RTH
Sbjct: 289 VDLLGRAGLLDEAYAMITAM---PMEPDVIVWRILLSACRTH 327
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 17/198 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M ++ +S+ A++ GY +D ARQ F+ MP+RD V W++MIDG ++
Sbjct: 8 IGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKG 67
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ AL +F+ ++ +E T+VS+L A A+LGALE G + Y+ N ++ +
Sbjct: 68 GEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLR 127
Query: 121 NALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+L+DMY KC T W T+I GLA G ++L++F +M
Sbjct: 128 TSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLG 187
Query: 164 IKPDEVAYVGVLSARTHN 181
I PDE+ Y+ + SA H
Sbjct: 188 IVPDEITYLCLFSACAHG 205
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 42 MPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
M + D ++W T+I G E+L LF+E+Q I+ DE T + + +A A+ G
Sbjct: 152 MDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGG 206
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++V Y D A++ FD+MP R+ V WT +I GY++ F + + +F+E+
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
S++ +E T+ S+L+A A++GAL G + Y+ KN ++ + AG LID+Y KC
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TWT MI G A G A D+F ML + + P+EV ++ VLSA
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 180 H 180
H
Sbjct: 419 H 419
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D +++SGY + D A + FD ++D V WT MIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIK-TYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY KC+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
TWT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 177 ARTH 180
A H
Sbjct: 315 ACAH 318
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ ++ A F+++ E++ WT MI+G+ R+A LF + +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T +++L+A A+ G +E G
Sbjct: 405 PNEVTFMAVLSACAHGGLVEEG 426
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++ V+SYTA+++GY +R ++ AR+ FD++ +D V W MI GY+ F+E
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL L++++ +N+ DE T+V++++A A G++ELG + ++I+ + ++I N LID
Sbjct: 181 ALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLID 240
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC T W T+I G +AL +F +MLR+ P++V
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300
Query: 171 YVGVLSARTH 180
+ VL A H
Sbjct: 301 MLSVLPACAH 310
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 17/168 (10%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+V+ A F + ++D + W T+I G+ +N ++EAL LFQE+ S ++ T++S+L
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306
Query: 91 ARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC---------------TVK 133
A A+LGA+++G WI YI+K V N +LIDMY KC
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 366
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G + A D+FS+M + I PD++ +VG+LSA +H+
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y ++ A+Q FD M R W MI G+ + A LF +++ + I
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ T V +L+A ++ G L+LG I + ++ K+ + +ID+ C
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHC-------- 450
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
G +A +M M ++PD V + +L A + HN
Sbjct: 451 --------GLFKEAKEMIRTM---PMEPDGVIWCSLLKACKMHN 483
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VIS+TA++ GY+ ++ AR+ F M RD V WT MI GY + R EA+ LF+ +
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----- 129
T + +T+ ++L+ A+L L+ G+ I ++ ++ NA+I MY +
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 377
Query: 130 ---------CTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
C K TWT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSA
Sbjct: 378 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437
Query: 179 TH 180
+H
Sbjct: 438 SH 439
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 49/219 (22%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V S+ A+VS + ++D+A F+ MP+R V W MI GY + +A
Sbjct: 115 VFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKA 174
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF + S++ DEFTI S+L+A ANLG + +G+ + YI + ++ + NALI
Sbjct: 175 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 234
Query: 126 MYCKC-------------------TVKFT-----------------------------WT 137
Y K + FT WT
Sbjct: 235 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 294
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
MIVG +G D+A+D+F M+ +P+ VLS
Sbjct: 295 AMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS 333
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F +MPERD V WT M+ G R RF EA+ ++ +FT+ ++L++ A
Sbjct: 11 ARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAV 70
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF-------------- 134
A +G + +++ K + + + N++++MY KC T F
Sbjct: 71 TQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAM 130
Query: 135 --------------------------TWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPD 167
+W MI G +G KAL +FS+ML +S+ PD
Sbjct: 131 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 190
Query: 168 EVAYVGVLSA 177
E VLSA
Sbjct: 191 EFTITSVLSA 200
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
AI++ Y AR+ FDQ+ R + + WT+MI + + EA+ LF+E+ + +
Sbjct: 365 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 424
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V +L+A ++ G + G K Y D ++KN+ + C M
Sbjct: 425 PDRITYVGVLSACSHAGFVNEG---KRYYD--QIKNEHQIAPEMSHYAC----------M 469
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ LA +G +A + +M ++PD +A+ +LSA R H
Sbjct: 470 VDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACRVH 508
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KDVIS+T+IV Y + A + F + P +D V WT M+ GY +
Sbjct: 193 VGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQN 252
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL +F + ++ DE ++ ++A A LGAL W++ ++ N++ G
Sbjct: 253 AMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVG 312
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML-RASI 164
+ L+DMY KC + +T+++MI GLA G +A+ +F +M+ RA++
Sbjct: 313 SGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANV 372
Query: 165 KPDEVAYVGVLSARTH 180
+P+ V ++GVL+A +H
Sbjct: 373 EPNHVTFIGVLTACSH 388
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VIS+TA++ GY+ ++ AR+ F M RD V WT MI GY + R EA+ LF+ +
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----- 129
T + +T+ ++L+ A+L L+ G+ I ++ ++ NA+I MY +
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFP 483
Query: 130 ---------CTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
C K TWT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSA
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 179 TH 180
+H
Sbjct: 544 SH 545
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 49/219 (22%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + V S+ A+VS + ++D+A F+ MP R V W MI GY + +A
Sbjct: 221 VFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKA 280
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF + S++ DEFTI S+L+A ANLG + +G+ + YI + ++ + NALI
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALIS 340
Query: 126 MYCKC-------------------TVKFT-----------------------------WT 137
Y K + FT WT
Sbjct: 341 TYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWT 400
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
MIVG +G D+A+D+F M+ +P+ VLS
Sbjct: 401 AMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLS 439
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 47/214 (21%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+ ++V ++ +++S + ++ AR F +MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ +FT+ ++L++ A A +G + +++ K + + + N++++MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 131 -------------TVK---------------------------------FTWTTMIVGLA 144
V+ +W MI G
Sbjct: 213 GDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYN 272
Query: 145 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+G KAL +FS+ML +S+ PDE VLSA
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSA 306
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
AI++ Y AR+ FDQ+ R + + WT+MI + + EA+ LF+E+ + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T V +L+A ++ G + G K Y D ++KN+ + C M
Sbjct: 531 PDRITYVGVLSACSHAGFVNEG---KRYYD--QIKNEHQIAPEMSHYAC----------M 575
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ LA +G +A + +M ++PD +A+ +LSA R H
Sbjct: 576 VDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACRVH 614
>gi|404357925|gb|AFR63955.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357939|gb|AFR63962.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357941|gb|AFR63963.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357949|gb|AFR63967.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357969|gb|AFR63977.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|404357601|gb|AFR63793.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357609|gb|AFR63797.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357621|gb|AFR63803.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357627|gb|AFR63806.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357637|gb|AFR63811.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357641|gb|AFR63813.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357643|gb|AFR63814.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357645|gb|AFR63815.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357649|gb|AFR63817.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357931|gb|AFR63958.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357945|gb|AFR63965.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357989|gb|AFR63987.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 107/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +++ S+ +++GY ++++AR+ F +MP +D V W+TMI G+ F EA
Sbjct: 194 MFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEA 253
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
F+E+Q + +E ++ L+A A+ GA+E G+ + +I+K+ + NAL+D
Sbjct: 254 FGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDT 313
Query: 127 YCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +WT+MI GLA+ G G++A+ +F +M + I+PD +A
Sbjct: 314 YSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIA 373
Query: 171 YVGVLSARTH 180
++ +L A +H
Sbjct: 374 FISILYACSH 383
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F++MPE R V WT+MI G EA+ LF E++ S I
Sbjct: 309 ALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIR 368
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
D +SIL A ++ G +E G E+ D ++ I ++D+Y +
Sbjct: 369 PDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYE 428
Query: 131 --------TVKFTWTTMIVGLAISGN 148
W T++ +I GN
Sbjct: 429 FIIHMPVLPTAIIWRTLLGACSIHGN 454
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ---TSNIMGDEFTIV 86
+ +D AR+ F P D + T+I G + + +L F E++ T+ + D F+
Sbjct: 53 DALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPL--DSFSFA 110
Query: 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
+L A A+ +LE G + + + +F G L+ MY +C
Sbjct: 111 FLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSEC 154
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 15/174 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++ Y E VD AR FD++ E V + MI GY R NR EAL+LF+E+Q + +
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPN 229
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
E T++S+L++ A LG+L+LG+WI Y K+ + ALIDM+ KC
Sbjct: 230 EITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFE 289
Query: 131 TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+++ W+ MIV A G +K++ MF +M +++PDE+ ++G+L+A +H
Sbjct: 290 KMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+ M E D V++ +M GY R E +LF EI I+ D +T S+L A A
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
ALE G + K + ++++ LI+MY +C + M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A ++AL +F +M +KP+E+ + VLS+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS 239
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D A F++M +D W+ MI Y + +++ +F+ +++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L A ++ G +E G
Sbjct: 329 PDEITFLGLLNACSHTGRVEEG 350
>gi|357432718|gb|AET79036.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432722|gb|AET79038.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432724|gb|AET79039.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDXARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWLHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|357432696|gb|AET79025.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 19/191 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F M KDV+S+TA+VS Y +D + FD MP ++ V W MI GY +R+ E
Sbjct: 263 SVFDRMDQKDVVSWTAMVSAYAKIGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDE 322
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL FQ + DE T+VS+++A A LG++E WI ++I K+ + + GNALI
Sbjct: 323 ALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALI 382
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DM+ KC TWTTMI G A + + AL +++ M R ++ D+
Sbjct: 383 DMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNRD---ALLVYNNMCREGVQLDDT 439
Query: 170 AYVGVLSARTH 180
++ L+A H
Sbjct: 440 VFIAALAACAH 450
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 24/188 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++DV+S+ +IV Y++ A F+ MPER+ V W T++ G+ R+
Sbjct: 170 QVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVT 229
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +F + + N + I + A G +E + +D + D+ + A++
Sbjct: 230 ARAVFDRMPSRNAVSWNLMI----SGYATSGDVEAARSVFDRMD----QKDVVSWTAMVS 281
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEV 169
Y K VK +W MI G + D+AL F ML +PDE
Sbjct: 282 AYAKIGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEA 341
Query: 170 AYVGVLSA 177
V V+SA
Sbjct: 342 TLVSVVSA 349
>gi|357432738|gb|AET79046.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVXCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWLHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G +F + + +S+ A++ GY + AR+ F +MP+RD V W+ MIDG ++
Sbjct: 115 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 174
Query: 62 RFREALTLFQEIQTS-----NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
REAL +F+ ++ + + ++ T+VS+L A A+LG L G + Y++++ +
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 117 IFAGNALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
I +L+DMY KC T W +I GLA+ G ++L MF +M
Sbjct: 235 IRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKM 294
Query: 160 LRASIKPDEVAYVGVLSARTHN 181
A + PDE+ Y+ +LSA H
Sbjct: 295 EHAGVVPDEITYLSLLSACVHG 316
>gi|404357933|gb|AFR63959.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357997|gb|AFR63991.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G LIDMY KC
Sbjct: 140 LGTTLIDMYAKC 151
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 19/180 (10%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +V+ A + FD + +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 262 ALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 321
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC------- 130
++ T++SIL A A+LGA+++G WI YI+K V N +LIDMY KC
Sbjct: 322 NDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQ 381
Query: 131 ---------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TW MI G A+ G + A D+FS+M I+PD++ +VG+LSA +H+
Sbjct: 382 QVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHS 441
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA+++GY++R ++ A++ FD++P +D V W MI GY+ ++E
Sbjct: 145 KVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKE 204
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LF+E + +N+ DE T+V++++A A ++ELG + ++I+ + +++ NALI
Sbjct: 205 ALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALI 264
Query: 125 DMYCK-------CTV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D+Y K C + +W T+I G +AL +F +MLR+ P++V
Sbjct: 265 DLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 324
Query: 170 AYVGVLSARTH 180
+ +L A H
Sbjct: 325 TMLSILPACAH 335
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A FD + E + ++W TM G+ + AL L+ + + ++ D +T +L + A
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------------TVKFT-- 135
+ G+ I ++ K DI+ +LI MY + V +T
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161
Query: 136 ---------------------------WTTMIVGLAISGNGDKALDMFSQ-MLRASIKPD 167
W MI G +GN +AL++F + M+ +++PD
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221
Query: 168 EVAYVGVLSA 177
E V V+SA
Sbjct: 222 ESTMVTVVSA 231
>gi|414865038|tpg|DAA43595.1| TPA: hypothetical protein ZEAMMB73_741081 [Zea mays]
Length = 400
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S++ +++ ++ +D R FDQMP RD V WT MI Y R R +EA
Sbjct: 75 VFDEMPVRDVVSFSGLLTAHLKNNHLDSVRMVFDQMPHRDVVSWTAMISAYARAWRPQEA 134
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF + + DE T+VS+++A LG LE GE ++ Y+D N + NAL+DM
Sbjct: 135 LALFDAM---TVQPDEVTMVSVVSACTALGDLETGERLRQYVDSNGFGWMVSLRNALMDM 191
Query: 127 YCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRAS--IKPDEV 169
Y KC V F +W T+I A G+ + L +F ML +KPD V
Sbjct: 192 YAKCGCLTEARVLFDGMAIRSLASWNTLISAYASHGDVENTLALFHMMLADDNYVKPDGV 251
Query: 170 AYVGVLSARTH 180
+ VL+ H
Sbjct: 252 TLLAVLTVYAH 262
>gi|357432742|gb|AET79048.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWLHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 105/191 (54%), Gaps = 15/191 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
IF +M+ +D +S+ +++S YI ++ F +MP ++ V W TMI G L+ F
Sbjct: 168 SIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGM 227
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF+E++T+N + D T+ S+L+ +LG+L G I Y N + + ALID
Sbjct: 228 VLDLFEEMKTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALID 287
Query: 126 MY-------------CKCTVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY CK VK + W +I LA+ G+G AL +F +M + I+PD++
Sbjct: 288 MYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDIT 347
Query: 171 YVGVLSARTHN 181
++G+++A +H+
Sbjct: 348 FIGIINACSHS 358
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
F M +++V+S+ A++ Y + + AR FD MP+R+ W++M+ G + R E
Sbjct: 156 HFFDAMPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLSGRCGE 215
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALI 124
AL +F ++ S + +E +VS+++A A L +LE G W+ Y ++ + + +A+I
Sbjct: 216 ALRVFHDMVRSGAVPNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGAMSVILASAII 275
Query: 125 DMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC V+ ++W MI GLA++G +AL + +M A ++P+++
Sbjct: 276 DMYGKCGGIHSAVRVFAAMPVRNVYSWNAMIAGLAMNGGERQALSLLWKMQMAGVRPNDI 335
Query: 170 AYVGVLSARTHN 181
++G+LSA +H+
Sbjct: 336 TFIGLLSACSHS 347
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+ G M VI +AI+ Y + A + F MP R+ W MI G R+
Sbjct: 261 ELQGAMS---VILASAIIDMYGKCGGIHSAVRVFAAMPVRNVYSWNAMIAGLAMNGGERQ 317
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
AL+L ++Q + + ++ T + +L+A ++ G + G
Sbjct: 318 ALSLLWKMQMAGVRPNDITFIGLLSACSHSGLVNEGR 354
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++FG M +++ +++ +SG I Q++ AR FD+M R V WT +IDGY R+N+ +
Sbjct: 170 QVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLK 229
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNAL 123
AL LF++ I+ I +E T++++ A A+LG +++ E + Y++K DI NAL
Sbjct: 230 ALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNAL 289
Query: 124 IDMYCKCTV-----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ID+Y KC +W +++ G A G +A+D F +M +A ++P
Sbjct: 290 IDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRP 349
Query: 167 DEVAYVGVLSARTHN 181
+ VA++ +LSA +H+
Sbjct: 350 NHVAFLSILSACSHS 364
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQE 72
D+ A++ Y ++ A F +MP+ R+ V W +++ GY REA+ F++
Sbjct: 282 DIRIVNALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEK 341
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
++ + + + +SIL+A ++ G +E G E+ ++ + DI +IDM
Sbjct: 342 MEKAGVRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDM 396
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M +DVIS++ +++ ++ +D AR FDQMP RD V WT MI Y R
Sbjct: 177 VGDARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARA 236
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R +EAL LF + + DE T++S+++A LG L GE + Y+D N +
Sbjct: 237 RRPQEALALFDAMP---VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLR 293
Query: 121 NALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLR--AS 163
NAL+DMY KC TV+ +W T I A G+ + + +F +ML S
Sbjct: 294 NALMDMYAKCGSLTEARNLFDGMTVRSLASWNTFISAYASHGDVESTVALFHRMLADGKS 353
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPD + VL+A H
Sbjct: 354 VKPDGTTLLAVLTAYAHK 371
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F +M KDV S+T +V+ Y ++ A + FD MP R+ V W+ MI Y + N+ E
Sbjct: 299 EVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEE 358
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALI 124
A+ LF+ + + +VS+L+A A LG L+LG WI Y+ K + GNA I
Sbjct: 359 AVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFI 418
Query: 125 DMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D+Y KC K +W +MI+ A+ G ++ L +F Q+ I PDE+
Sbjct: 419 DVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEI 478
Query: 170 AYVGVLSARTHN 181
++G+LSA +H+
Sbjct: 479 TFLGLLSACSHS 490
Score = 86.3 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QE 72
+ V+ A+V Y N + AR FD+MP+RD V WTT++DGY R EA +F +
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY----C 128
+ + +E T+V++++A +G L G + Y+ V + NALIDM+ C
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293
Query: 129 KCTVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ + ++WTTM+ A G+ + A +F M R
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPR 337
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A + Y D A + F +M ER+ V W +MI + + E L LF++++ + I+
Sbjct: 416 AFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVP 475
Query: 81 DEFTIVSILTARANLGALELG 101
DE T + +L+A ++ G + G
Sbjct: 476 DEITFLGLLSACSHSGLVSEG 496
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN---LGALELGEWIK 105
+ TM+ +LR A LF+ + ++ D T+V + A A+ + GE +
Sbjct: 104 MLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVH 163
Query: 106 TYIDK-NKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNG 149
K V + GNAL+ Y +WTT++ G A G
Sbjct: 164 CVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLA 223
Query: 150 DKALDMFSQMLRA-SIKPDEVAYVGVLSA 177
D+A +F +M+ A ++P+EV V V+SA
Sbjct: 224 DEAWRVFCRMVVAGGLQPNEVTLVAVVSA 252
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 112/199 (56%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G + +F M ++V+++ +++G + +++ A FD+MPE++ V WT +IDGY+R
Sbjct: 8 LGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRN 67
Query: 61 NRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIF 118
N++ E L+LF+ + I E TI++IL A +N+G L+ I Y +K DI
Sbjct: 68 NKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIR 127
Query: 119 AGNALIDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLR 161
N++ID Y KC KF +WT++I G A+ G +A++ F +M +
Sbjct: 128 VANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEK 187
Query: 162 ASIKPDEVAYVGVLSARTH 180
A +KP+ V ++ VL+A +H
Sbjct: 188 AGLKPNRVTFLSVLNACSH 206
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EW 103
++ V WT++I G+ ++EA+ F+ ++ + + + T +S+L A ++ G ++ G
Sbjct: 157 KNLVSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRC 216
Query: 104 IKTYIDKNKVKNDIFAGNALIDM 126
++++ V DI ++DM
Sbjct: 217 FYKMVNEHGVLPDIKHYGCVVDM 239
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M + V+S T++VSGY +V +AR F M +D + W +I G + EA
Sbjct: 310 IFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEA 369
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L LF+ ++ ++ +T ++L A ANL L+LG +++ K+ + +D+F G
Sbjct: 370 LILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVG 429
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +V+ +W MIVG A +G G+KAL++F +ML +
Sbjct: 430 NSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEA 489
Query: 166 PDEVAYVGVLSARTH 180
PD V +GVL A +H
Sbjct: 490 PDHVTMIGVLCACSH 504
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 102/187 (54%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ +I+ + +D A F++MP+ D W +MI G+ + RF E
Sbjct: 75 KLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDE 134
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F ++ + +E++ S L+A A L L+LG I + + ++ +D++ G+AL+D
Sbjct: 135 ALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVD 194
Query: 126 MYCKC-------------TV--KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TV + +W ++I +G D+AL +F +M++ ++PDEV
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT 254
Query: 171 YVGVLSA 177
V+SA
Sbjct: 255 LASVVSA 261
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y +V+ A+ FD+M R V W ++I Y + EAL +F E+
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCT-- 131
+ DE T+ S+++A A + A++ G+ I + K ++ +ND+ GNAL+DMY KC
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304
Query: 132 ------------------------------VK--------------FTWTTMIVGLAISG 147
VK TW +I G +G
Sbjct: 305 NEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNG 364
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL +F + R S+ P + +L+A
Sbjct: 365 ENEEALILFRLLKRESVWPTHYTFGNLLNA 394
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F ++ DV +++ Y+ V+ + F M E+D V W MI GY + +AL
Sbjct: 418 FQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKAL 477
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F ++ S D T++ +L A ++ G L+ G + Y ++ +
Sbjct: 478 EVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRY---YFRSMTAQHGLM--------- 525
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+K +T M+ L +G ++A ++ +M S++PD + + +L+A
Sbjct: 526 ---PLKDHYTCMVDLLGRAGYLEEAKNLIEEM---SMQPDAIVWGSLLAA 569
>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
Length = 387
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G +F + + +S+ A++ GY + AR+ F +MP+RD V W+ MIDG ++
Sbjct: 9 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 68
Query: 62 RFREALTLFQEIQTS-----NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
REAL +F+ ++ + + ++ T+VS+L A A+LG L G + Y++++ +
Sbjct: 69 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 128
Query: 117 IFAGNALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
I +L+DMY KC T W +I GLA+ G ++L MF +M
Sbjct: 129 IRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKM 188
Query: 160 LRASIKPDEVAYVGVLSARTHN 181
A + PDE+ Y+ +LSA H
Sbjct: 189 EHAGVVPDEITYLSLLSACVHG 210
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
T++V Y + A + F +P D ++W +I G RE+L +FQ+++ +
Sbjct: 133 TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 192
Query: 78 IMGDEFTIVSILTARANLG 96
++ DE T +S+L+A + G
Sbjct: 193 VVPDEITYLSLLSACVHGG 211
>gi|357432716|gb|AET79035.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWLHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V TA+V Y ++ AR FD M E++ V W++MI GY +EAL LF ++
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ D + +V +L + A LGALELG+W I+ N+ ++ G ALIDMY KC
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRM 361
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ W I GLA+SG+ AL +F QM ++ IKPD +VG+L A
Sbjct: 362 DRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421
Query: 179 TH 180
TH
Sbjct: 422 TH 423
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++++ Y +D A + FD +P++++ WT I GY+ V + REA+ +F+ +
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
+ D F++V +L+A G L GEWI YI +N + ++F AL+D Y KC
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNME 261
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W++MI G A +G +ALD+F +ML +KPD A VGVL +
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
DQ E + L+ TMI G + + F+E++ ++ ++ + D FT +L A A +
Sbjct: 65 LDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDS 124
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------KF-TWTTMIVGL 143
ELG + + + K + D F +LI++Y KC F +WT I G
Sbjct: 125 ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGY 184
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +A+DMF ++L ++PD + V VLSA
Sbjct: 185 VGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSA 218
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++D A + F M ++D V+W I G ++AL LF +++ S I
Sbjct: 349 TALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIK 408
Query: 80 GDEFTIVSILTARANLGALELG 101
D T V +L A + G +E G
Sbjct: 409 PDRNTFVGLLCACTHAGLVEEG 430
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 2 GFTLEIFGTMKNKDVISY--TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLR 59
GF LE K +V SY +A++ Y + AR+ FD MP +D V W +I GY +
Sbjct: 253 GFVLE-----KKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQ 307
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
EA+ LF ++ + D T++ +L+A + +GAL+LG+W++T+ + +++D++
Sbjct: 308 NGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYV 367
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR--A 162
+ALIDMY KC + +W MI LA G +AL +F +M +
Sbjct: 368 ASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNG 427
Query: 163 SIKPDEVAYVGVLSARTH 180
+++P+++ ++GVLSA H
Sbjct: 428 TVQPNDITFIGVLSACVH 445
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++++ Y ++ AR+ FD+M +RD V W +MI GY ++ +EA+ LF E++
Sbjct: 168 SLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEP 227
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
DE T+VS+L A +LG L LG W++ ++ + K++ + + G+ALIDMY KC
Sbjct: 228 DEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVF 287
Query: 131 -----TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW +I G A +G ++A+ +F+ M A PD V + VLSA
Sbjct: 288 DSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSA 339
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV-NRFREALTLFQEIQTSNIMG 80
++S I+ + + A F+Q+ + + + M+ G ++ + L+ ++++ +
Sbjct: 67 LLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKA 126
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF----- 134
+ FT + A N+ L G+ + K + D + ++LI MY +C + F
Sbjct: 127 NNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVF 186
Query: 135 ---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +MI G + G +A+ +F +M +PDE+ V VL A
Sbjct: 187 DEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGA 238
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +++ ARQ FD+ E+ W MI GY + +A++LFQE+Q NI
Sbjct: 357 TALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNIS 416
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ T+ SIL+A A LGAL LG+WI + + +++ ALIDMY KC
Sbjct: 417 PNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRL 476
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TW +I G + G G +AL +F +ML I+P V ++ VL A +H
Sbjct: 477 FDSMPEKNEVTWNAIISGYGLHGLGQEALKLFYEMLNCGIQPTRVTFLSVLYACSH 532
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 20/181 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ +A+V Y + DIA + FD++PERD +L+ TMI G +RV + +++ LF+
Sbjct: 147 SSDLFVGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKY 206
Query: 73 IQTSNIMGDEF---TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ + N G +F T++++L A A L L LG I+ K + I LI +Y K
Sbjct: 207 MISGN--GPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVTGLISLYSK 264
Query: 130 C------TVKFT---------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
C ++ FT + MI GL +G + ++ +F + L + K + + VG+
Sbjct: 265 CGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDSGEKVNSSSIVGL 324
Query: 175 L 175
+
Sbjct: 325 I 325
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ T + N A F +P+ D L+ +I G+ N A++LF ++
Sbjct: 47 DIAVATKLTHKLFNFNATSHASALFFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLR 106
Query: 75 TS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
S ++ D FT +++A N G ++G + + + + +D+F G+AL+DMY K
Sbjct: 107 KSTDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALVDMYFK 162
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 7 IFGTMKNK----DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
I G +K K +V TA++ Y + AR+ FD MPE++ V W +I GY
Sbjct: 441 IHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRLFDSMPEKNEVTWNAIISGYGLHGL 500
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
+EAL LF E+ I T +S+L A ++ G + G+ I
Sbjct: 501 GQEALKLFYEMLNCGIQPTRVTFLSVLYACSHAGLVREGDEI 542
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+++ ++ GY V A+ FDQMP RD V + +M+ GY++ E
Sbjct: 251 DLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHME 310
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL +F ++ S++ DE T+V +L+A A LG L + YI + G ALI
Sbjct: 311 ALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALI 370
Query: 125 DMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DM+ KC +++ W MI GLAI G+G+ A DM Q+ R SIKPD++
Sbjct: 371 DMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDI 430
Query: 170 AYVGVLSARTHN 181
++GVL+A +H+
Sbjct: 431 TFIGVLNACSHS 442
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 28/181 (15%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGY 57
+G E+F M K++IS+ +++SGY + V+IA + F +MPE+D + W ++IDGY
Sbjct: 181 IGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGY 240
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
++ R +A LF + +++ T +++ A LG + KT D+ + D+
Sbjct: 241 VKHGRMEDAKDLFYVMPRRDVV----TWATMIDGYAKLGFVHKA---KTLFDQMPHR-DV 292
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 176
A N +M+ G + +AL++F+ M + S + PDE V VLS
Sbjct: 293 VAYN----------------SMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLS 336
Query: 177 A 177
A
Sbjct: 337 A 337
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 1 MGFT---LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTM 53
+GF ++I G ++ D+ ++ Y+ + ARQ FD+MP+RD V + +M
Sbjct: 112 LGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSM 171
Query: 54 IDGYLRVNRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNK 112
IDGY++ A LF ++M E ++S + + G I + +
Sbjct: 172 IDGYVKCGLIGSARELF------DLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEM 225
Query: 113 VKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFS 157
+ D+ + N+LID Y K TW TMI G A G KA +F
Sbjct: 226 PEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFD 285
Query: 158 QMLRASIKPDEVAYVGVLSARTHN 181
QM D VAY +++ N
Sbjct: 286 QMPHR----DVVAYNSMMAGYVQN 305
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + + AL F + + + D+F++ +L A + LG ++ G I
Sbjct: 63 DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 122
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKC 147
>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 404
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 15/183 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M LE+F M ++ S+ ++++G+ ++ A + FD+MP +D V WTTM++G+ +
Sbjct: 219 MRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVVSWTTMVNGFSQN 278
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL++F + ++ ++FTIVS L+A A +GALE G I Y+ N + + G
Sbjct: 279 GDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKYLKDNGFRLNRAVG 338
Query: 121 NALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+DM+ KC K TW+ MI G AI G+ ++A+ F QM+ A I+
Sbjct: 339 NALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEAIQCFKQMMYAGIQ 398
Query: 166 PDE 168
PDE
Sbjct: 399 PDE 401
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 28/161 (17%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDY----VLWTTMIDGYLRVNRFREALTLFQEIQTS 76
++V Y+ E+V +A + FD+ P+R + +LW +I+G +V R+AL LF+++
Sbjct: 173 SMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVLINGCCKVGDMRKALELFEDMPLR 232
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTW 136
N + S++ +G LE + D+ VK+ + +W
Sbjct: 233 NTA----SWNSLINGFFKIGDLEQA---IEHFDRMPVKDVV-----------------SW 268
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TTM+ G + +G+ +KAL +FS+ML +KP++ V LSA
Sbjct: 269 TTMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSA 309
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W TMIDGY ++
Sbjct: 242 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 301
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S+++ D+ T+V +L A A
Sbjct: 302 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 361
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + G ALIDMY KC +++ W
Sbjct: 362 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 421
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLAI G G+ A DM Q+ R S+KPD++ +VGVL+A +H+
Sbjct: 422 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHS 464
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 10 TMKNKDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
M+ K++IS+ +++SGY + VDIA + F MPE+D + W +MIDGY++ R +A
Sbjct: 214 PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKG 273
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF + +++ T +++ A LG + KT D+ D+ A N+++ Y
Sbjct: 274 LFDVMPRRDVV----TWATMIDGYAKLGFVHHA---KTLFDQMP-HRDVVAYNSMMAGYV 325
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+ +AL++FS M + S + PD+ V VL A
Sbjct: 326 QNKYHM----------------EALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL L + + + D+F++ +L A + LG ++ G I
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKC 169
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 15/165 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ +++ Y +V AR FD+MP R+ V W+ M++GY++ REAL +F ++Q
Sbjct: 142 DASTFNTLITAYARAGRVADARALFDEMPVRNAVSWSAMVNGYVQAGDAREALQIFAQMQ 201
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
++ D+ +V +L A A GALE G+W+ Y+ + ++ +F G AL+DMY KC
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIRITVFFGTALVDMYSKCGEVQ 261
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
WTTMI LA+ G G +AL +F+QM+ + +
Sbjct: 262 LAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSGL 306
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ M+ G +G+ +AL +F+QM ++PD+ VGVL+A
Sbjct: 176 SWSAMVNGYVQAGDAREALQIFAQMQAEDVRPDDTVLVGVLAA 218
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +V +A + F++M +++ + WTTMI R EAL LF ++ +S ++
Sbjct: 248 TALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSGLV 307
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+++ +V GY V A+ FDQMP+RD V + +M+ GY++ E
Sbjct: 275 DLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHME 334
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A+ +F +++ S++ DE T+V +L+A A LG L + Y + K G ALI
Sbjct: 335 AIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALI 394
Query: 125 DMYCKC-TVKFT--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +++ W MI GLAI G G+ A DM Q+ R SIKPD++
Sbjct: 395 DMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI 454
Query: 170 AYVGVLSARTHN 181
+VGVL+A +H+
Sbjct: 455 TFVGVLNACSHS 466
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 28/176 (15%)
Query: 6 EIFGTM--KNKDVISYTAIVSGYINR-EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M + K++IS+ ++++GY R + VDIA FD+MPE+D + W ++IDGY++ R
Sbjct: 210 ELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGR 269
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A LF ++ +++ T +++ A LG + K+ D+ + D+ A N+
Sbjct: 270 IEDAKDLFDKMPRRDVV----TWATMVDGYAKLGFVHQA---KSLFDQMP-QRDVVAYNS 321
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
++ Y + +A+D+F+ M + S + PDE V VLSA
Sbjct: 322 MMAGYVQNRYHM----------------EAIDIFNDMEKESHLSPDETTLVIVLSA 361
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 28/184 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI- 73
D+ ++ Y+ + ARQ FD+M +RD V + +MIDGY++ A LF +
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMP 216
Query: 74 -QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N++ ++++ RA+ G I + + + D+ + N+LID Y K
Sbjct: 217 SEKKNLISWN-SMINGYAQRAD------GVDIASNLFDEMPEKDLISWNSLIDGYVKHGR 269
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW TM+ G A G +A +F QM + D VAY +++
Sbjct: 270 IEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQR----DVVAYNSMMAG 325
Query: 178 RTHN 181
N
Sbjct: 326 YVQN 329
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL LF + + + D+F++ +L A + LG ++ G
Sbjct: 87 DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKC 171
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M K+V+ Y +++G + + V+ AR+ F+ M +RD + WTTM+ G+ +
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL F+ ++ I D++T SILTA L ALE G+ I YI + +++F G
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL+DMY KC ++K +WT +IVG +G ++A+ +FS+M R I
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370
Query: 166 PDEVAYVGVLSA 177
PD+ V+S+
Sbjct: 371 PDDFTLGSVISS 382
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
I T + +V +A+V Y + A F +M ++ + WT +I GY + EA
Sbjct: 298 IIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEA 357
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +F E+Q I D+FT+ S++++ ANL +LE G + + + I NAL+ +
Sbjct: 358 VRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL 417
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC + +WT ++ G A G + +D+F +ML +KPD V +
Sbjct: 418 YGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTF 477
Query: 172 VGVLSA 177
+GVLSA
Sbjct: 478 IGVLSA 483
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y ++ A + FD+M D V WT ++ GY + R +E + LF+++ ++
Sbjct: 413 ALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKP 472
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T + +L+A + G +E G +Y + + I ID + +T MI
Sbjct: 473 DGVTFIGVLSACSRAGFVEKG---CSYFHSMQKDHGIVP----IDDH--------YTCMI 517
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ SG +A + QM + PD + + +LSA
Sbjct: 518 DLYSRSGRLKEAEEFIKQM---PMHPDAIGWGTLLSA 551
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 48/220 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+F + ++ +Y A++S + +D F M +RD V + +I G+
Sbjct: 62 RVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHAR 121
Query: 66 ALTLFQEI--QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
A+ L+ + S++ T+ +++ A + LG LG I + + F G+ L
Sbjct: 122 AVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPL 181
Query: 124 IDMYCK-------------------------------CTV---------------KFTWT 137
+ MY K C + TWT
Sbjct: 182 VGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWT 241
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TM+ G +G +AL+ F +M I D+ + +L+A
Sbjct: 242 TMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W TMIDGY ++
Sbjct: 235 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 294
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S+++ D+ T+V +L A A
Sbjct: 295 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 354
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + G ALIDMY KC +++ W
Sbjct: 355 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 414
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLAI G G+ A DM Q+ R S+KPD++ +VGVL+A +H+
Sbjct: 415 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHS 457
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 26/170 (15%)
Query: 10 TMKNKDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
M+ K++IS+ +++SGY + VDIA + F MPE+D + W +MIDGY++ R +A
Sbjct: 207 PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKG 266
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF + +++ T +++ A LG + KT D+ + D+ A N
Sbjct: 267 LFDVMPRRDVV----TWATMIDGYAKLGFVHHA---KTLFDQMPHR-DVVAYN------- 311
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+M+ G + +AL++FS M + S + PD+ V VL A
Sbjct: 312 ---------SMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 352
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL L + + + D+F++ +L A + LG ++ G I
Sbjct: 78 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKC 162
>gi|357432726|gb|AET79040.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432730|gb|AET79042.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432732|gb|AET79043.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432736|gb|AET79045.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432740|gb|AET79047.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVLCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWLHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTM----KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
+G + +I G M N D+ + +A+++ Y N + +R FD+M +D V+W +M G
Sbjct: 470 LGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSG 529
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y++ + EAL LF E+Q S DEFT V ++TA NL +L+LG+ + K ++ +
Sbjct: 530 YVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECN 589
Query: 117 IFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ NAL+DMY KC W ++I A G G KAL M +M+
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMC 649
Query: 162 ASIKPDEVAYVGVLSARTH 180
I+P+ + +VGVLSA +H
Sbjct: 650 EGIEPNYITFVGVLSACSH 668
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV T ++ Y+ +D AR FD +PE+ V WTTMI G +++ R +L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-T 131
+ N++ D + + ++L+A + L LE G+ I +I + + D N LID Y KC
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299
Query: 132 VK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
V+ +WTT++ G + +A+++F+ M + +KPD A +L++
Sbjct: 300 VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTS 359
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
KD ++ Y+ +V A + FD MP ++ + WTT++ GY + + +EA+ LF
Sbjct: 280 HEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFT 339
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ + D F SILT+ A+L ALE G + Y K + ND + N+LIDMY KC
Sbjct: 340 SMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCD 399
Query: 132 V---------------KFTWTTMIVGLAISGNG---DKALDMFSQMLRASIKPDEVAYVG 173
+ MI G + G AL++F M I+P + +V
Sbjct: 400 CLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVS 459
Query: 174 VLSA 177
+L A
Sbjct: 460 LLRA 463
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 18/161 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTA 91
AR+ FD D VL+ MI+GY R+ +AL +F +++ I T VS+L A
Sbjct: 404 ARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
A+L +L L + I + K + DIFAG+ALI +Y C VK W
Sbjct: 464 SASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIW 523
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+M G ++AL++F ++ + +PDE +V +++A
Sbjct: 524 NSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTA 564
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 26/165 (15%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARA 93
AR+ F++MPER+ V W+TM+ + E+L +F + +T +E+ + S + A +
Sbjct: 98 ARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACS 157
Query: 94 NLGALELGEW----IKTYIDKNKVKNDIFAGNALIDMYC-----------------KCTV 132
L G W +++++ K++ D++ G LID Y K TV
Sbjct: 158 GLDG--SGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTV 215
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWTTMI G G +L +F Q++ ++ PD VLSA
Sbjct: 216 --TWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSA 258
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + FD RD V W ++I Y R+AL + +++ I
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEP 654
Query: 81 DEFTIVSILTARANLGALELG 101
+ T V +L+A ++ G +E G
Sbjct: 655 NYITFVGVLSACSHAGLVEDG 675
>gi|404357745|gb|AFR63865.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357757|gb|AFR63871.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSRDLPAWNSVVNAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M++ DV+ + ++ G+ ++ + F QM ER V W M+ +
Sbjct: 157 MGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKN 216
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFA 119
N+ +AL LF E+ D+ ++V++L A LGA+++GEWI +Y + K +++ I
Sbjct: 217 NKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINV 276
Query: 120 GNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
GN+L+D YCKC +W MI GLA +G G+ +++F +M+
Sbjct: 277 GNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGF 336
Query: 165 KPDEVAYVGVLSARTH 180
+P++ +VGVL+ H
Sbjct: 337 EPNDSTFVGVLACCAH 352
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 48/214 (22%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G ++ ++++ V + R V A + F + +L+ +I + F + +
Sbjct: 35 GLQQSNQILAHFVSVCASLRR--VPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFS 92
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-------------------- 108
F ++T I DE+T+ + + +NL LG + ++
Sbjct: 93 FFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYA 152
Query: 109 ------DKNKV-----KNDIFAGNALIDMYCKC---------------TVKFTWTTMIVG 142
D +KV D+ N +I +CK +W M+
Sbjct: 153 SCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSC 212
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
LA + +KAL++F++ML +PD+ + V VL
Sbjct: 213 LAKNNKEEKALELFNEMLEQGFEPDDASLVTVLP 246
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 82/140 (58%), Gaps = 15/140 (10%)
Query: 56 GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115
G+L REAL LF +Q ++ D+ +V +L A A LG LE G+W+ Y+ N ++
Sbjct: 110 GFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNIRI 169
Query: 116 DIFAGNALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQML 160
+F G AL+DMY KC +K WTTMI GLA+ G G +AL++FSQM
Sbjct: 170 TVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQME 229
Query: 161 RASIKPDEVAYVGVLSARTH 180
R +KPD++A++G L A TH
Sbjct: 230 RLGVKPDDIAFIGALCACTH 249
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ +A + F M E++ + WTTMI G R EAL LF +++ +
Sbjct: 175 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 234
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D+ + L A + G ++ G E + + K +K I ++D+
Sbjct: 235 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 282
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A +M +M +KPD + + +++
Sbjct: 283 ----LARNGLLNEAREMVEKM---PMKPDALIWGALMAG 314
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 16/194 (8%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F +F M +DVIS++ ++ GY + +AR FD+MP++D V + T++ GY +
Sbjct: 274 FAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGY 333
Query: 63 FREALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+ EAL +F E+Q SN+ DE T+V L+A + LG +E + Y +N +
Sbjct: 334 YTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAV 393
Query: 122 ALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ALIDMY KC + F W MI G+A +G G A M +M R S+KP
Sbjct: 394 ALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKP 453
Query: 167 DEVAYVGVLSARTH 180
D + ++GVL+A H
Sbjct: 454 DGITFIGVLNACAH 467
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 50/203 (24%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI------- 73
+++ Y+ ++ ARQ FD+MP +D V + +MIDGY++ A LF +
Sbjct: 165 CLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNL 224
Query: 74 -----------QTSNIMG---------DEFTIVS---ILTARANLGALELGEWIKTYIDK 110
QT + +G E +VS I+ A G +E + +
Sbjct: 225 ISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMP- 283
Query: 111 NKVKNDIFAGNALIDMYCKC-TVKFTWT--------------TMIVGLAISGNGDKALDM 155
K D+ + + +ID Y K +K T T++ G A +G +AL++
Sbjct: 284 ---KRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEI 340
Query: 156 FSQMLRAS-IKPDEVAYVGVLSA 177
F +M R S + PDE V LSA
Sbjct: 341 FHEMQRQSNLSPDETTLVVALSA 363
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I Y N AL LF + + D+F+ IL A A + +E G+ I
Sbjct: 89 DPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIH 148
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC-TVKF--------------TWTTMIVGLAISGNGD 150
+ K ++ +++F N LI MY +C ++F ++ +MI G SG D
Sbjct: 149 GLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTID 208
Query: 151 KALDMFSQM 159
A ++F M
Sbjct: 209 LARELFDSM 217
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G +F + + +S+ A++ GY + AR+ F +MP+RD V W+ MIDG ++
Sbjct: 115 GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 174
Query: 62 RFREALTLFQEIQTS-----NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
REAL +F+ ++ + + ++ T+VS+L A A+LG L G + Y++++ +
Sbjct: 175 EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 234
Query: 117 IFAGNALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQM 159
I +L+DMY KC T W +I GLA+ G ++L MF +M
Sbjct: 235 IRLATSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKM 294
Query: 160 LRASIKPDEVAYVGVLSARTHN 181
A + PDE+ Y+ +LSA H
Sbjct: 295 EHAGVVPDEITYLCLLSACVHG 316
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
T++V Y + A + F +P D ++W +I G RE+L +FQ+++ +
Sbjct: 239 TSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 298
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++ DE T + +L+A + G ++ ++ +++ + L+D+
Sbjct: 299 VVPDEITYLCLLSACVHGGLVDEAWRFFRSLEAQRLRPHVEHYACLVDV 347
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 27/205 (13%)
Query: 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GF E IF ++ K V+S+T ++ + E + R+ FD+MPER+ V WT M+ GYL
Sbjct: 160 GFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYL 219
Query: 59 RVNRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTY-------IDK 110
RE L L E+ G F T+ S+L+A A G L +G W+ Y + +
Sbjct: 220 GAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGE 279
Query: 111 NKVKNDIFAGNALIDMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDM 155
+ + + G AL+DMY KC ++K TW + GLA+ G G +DM
Sbjct: 280 EETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDM 339
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
F +M+R +KPD++ + +LSA +H
Sbjct: 340 FPEMVR-EVKPDDLTFTALLSACSH 363
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
A+ Y + ++ A++ FD++P ++D V WTT++ + R ++ LF E++ +
Sbjct: 48 ALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRV 107
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
D ++V + A L L GE K + NAL+DMY KC
Sbjct: 108 EIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKC 159
>gi|404357539|gb|AFR63762.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357545|gb|AFR63765.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357569|gb|AFR63777.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357597|gb|AFR63791.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357599|gb|AFR63792.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357603|gb|AFR63794.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357605|gb|AFR63795.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357613|gb|AFR63799.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357623|gb|AFR63804.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357625|gb|AFR63805.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357633|gb|AFR63809.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357635|gb|AFR63810.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357779|gb|AFR63882.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357781|gb|AFR63883.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357783|gb|AFR63884.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357785|gb|AFR63885.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357787|gb|AFR63886.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357789|gb|AFR63887.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357791|gb|AFR63888.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357793|gb|AFR63889.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357795|gb|AFR63890.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357797|gb|AFR63891.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357799|gb|AFR63892.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357801|gb|AFR63893.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357803|gb|AFR63894.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357807|gb|AFR63896.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357809|gb|AFR63897.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357811|gb|AFR63898.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357813|gb|AFR63899.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357815|gb|AFR63900.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357819|gb|AFR63902.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357821|gb|AFR63903.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357823|gb|AFR63904.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357825|gb|AFR63905.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357827|gb|AFR63906.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357831|gb|AFR63908.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357833|gb|AFR63909.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357835|gb|AFR63910.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357839|gb|AFR63912.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357841|gb|AFR63913.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357923|gb|AFR63954.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357935|gb|AFR63960.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357937|gb|AFR63961.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357943|gb|AFR63964.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357947|gb|AFR63966.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357951|gb|AFR63968.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357959|gb|AFR63972.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357963|gb|AFR63974.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357973|gb|AFR63979.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357975|gb|AFR63980.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357977|gb|AFR63981.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357985|gb|AFR63985.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357987|gb|AFR63986.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357991|gb|AFR63988.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357993|gb|AFR63989.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357995|gb|AFR63990.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357999|gb|AFR63992.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358001|gb|AFR63993.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358003|gb|AFR63994.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358005|gb|AFR63995.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358007|gb|AFR63996.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358009|gb|AFR63997.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358011|gb|AFR63998.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358013|gb|AFR63999.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358015|gb|AFR64000.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358017|gb|AFR64001.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358019|gb|AFR64002.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358021|gb|AFR64003.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358023|gb|AFR64004.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358025|gb|AFR64005.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358027|gb|AFR64006.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358029|gb|AFR64007.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358031|gb|AFR64008.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358033|gb|AFR64009.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358035|gb|AFR64010.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358037|gb|AFR64011.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358039|gb|AFR64012.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358041|gb|AFR64013.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358043|gb|AFR64014.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358045|gb|AFR64015.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358047|gb|AFR64016.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358049|gb|AFR64017.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358051|gb|AFR64018.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358053|gb|AFR64019.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358055|gb|AFR64020.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358057|gb|AFR64021.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358059|gb|AFR64022.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358061|gb|AFR64023.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358063|gb|AFR64024.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358065|gb|AFR64025.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358067|gb|AFR64026.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358069|gb|AFR64027.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358071|gb|AFR64028.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358073|gb|AFR64029.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358075|gb|AFR64030.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358077|gb|AFR64031.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358081|gb|AFR64033.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358083|gb|AFR64034.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358085|gb|AFR64035.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358087|gb|AFR64036.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358089|gb|AFR64037.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358093|gb|AFR64039.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358095|gb|AFR64040.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358097|gb|AFR64041.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358099|gb|AFR64042.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358101|gb|AFR64043.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358105|gb|AFR64045.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358111|gb|AFR64048.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358113|gb|AFR64049.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358115|gb|AFR64050.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358117|gb|AFR64051.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M+ +DV+S+ ++S + Q+ A F+ MP++ V WT M+ GY V +
Sbjct: 175 KVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPG 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+ +QT D+ +IV++L A A LG LELG WI Y ++ + NAL++
Sbjct: 235 AVDAFRSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALME 294
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEV 169
MY KC +W+T+I GLA G +A+ +F++M + ++P+ +
Sbjct: 295 MYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVI 354
Query: 170 AYVGVLSA 177
+VG+LSA
Sbjct: 355 TFVGLLSA 362
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 53/200 (26%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-------QTSNIMGDEF 83
+V A + F Q+ + + L MI Y + ++ R+A+ ++ + + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC--------------- 128
T +L A ALELG+ + T++ ++ + N+LI+MY
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 ----------------------KCTVKF---------TWTTMIVGLAISGNGDKALDMFS 157
K T F TWT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 158 QMLRASIKPDEVAYVGVLSA 177
M +PD+V+ V VL A
Sbjct: 241 SMQTEGFEPDDVSIVAVLPA 260
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 107/185 (57%), Gaps = 15/185 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + +K+V+ Y +++G + + V+ AR+ F+ M +RD + WTTM+ G+ + EAL
Sbjct: 198 FDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEAL 257
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F+ ++ I D++T SILTA L ALE G+ I YI + + +++F G+AL+DMY
Sbjct: 258 EIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMY 317
Query: 128 CKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC ++K +WT +IVG +G ++A+ +FS+M R I PD+
Sbjct: 318 SKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLG 377
Query: 173 GVLSA 177
V+S+
Sbjct: 378 SVISS 382
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
I T + +V +A+V Y + +A F +M ++ + WT +I GY + EA
Sbjct: 298 IIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEA 357
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +F E+Q I D++T+ S++++ ANL +LE G + + + I NAL+ +
Sbjct: 358 VRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTL 417
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC + +WT ++ G A G + +D+F +ML +KPD V +
Sbjct: 418 YGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTF 477
Query: 172 VGVLSA 177
+GVLSA
Sbjct: 478 IGVLSA 483
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y ++ A + FD+M D V WT ++ GY + R +E + LF+++ +
Sbjct: 413 ALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKP 472
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T + +L+A + G +E G ++Y + + I ID + +T MI
Sbjct: 473 DGVTFIGVLSACSRAGFVEKG---RSYFHSMQKDHGIVP----IDDH--------YTCMI 517
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ SG +A + QM + PD + + +LSA
Sbjct: 518 DLYSRSGKLKEAEEFIKQM---PMHPDAIGWGTLLSA 551
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 48/219 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M + ++ +Y A++S + + F M +RD V + +I G+ +A
Sbjct: 63 VFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQA 122
Query: 67 LTLFQEI--QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+ ++ + S++ T+ +++ A + LG LG+ I + + F G+ L+
Sbjct: 123 VRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLV 182
Query: 125 DMYCKCTV----------------------------------------------KFTWTT 138
DMY K ++ TWTT
Sbjct: 183 DMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTT 242
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
M+ G +G +AL++F +M I D+ + +L+A
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTA 281
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y +++ AR FD+MPERD V WT MI GY E+L LF +++ ++
Sbjct: 271 AALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 330
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+ +V+++ A A LGA+ I YI + K + D+ G A+IDM+ KC
Sbjct: 331 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 390
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W+ MI G G KALD+F MLR+ I P+++ V +L A +H
Sbjct: 391 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 446
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y+ +++ AR FD+M ERD V WT MI GY + E+L LF++++ ++
Sbjct: 69 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 128
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+ +V+++ A A LGA+ I YI + K + D+ G A+IDMY KC
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 188
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ MI G G KALD+F ML + + PD++ +L A
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 241
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA++ Y V+ AR+ FD+M E++ + W+ MI Y + R+AL LF+ +
Sbjct: 165 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--- 131
+S ++ D+ T+ S+L A ++L L++G I + K + D F AL+DMY KC
Sbjct: 225 SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 284
Query: 132 -VKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+F TWT MI G A GN +++L +F +M + PD+VA V V+ A
Sbjct: 285 DARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 342
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
M+ G+ +V + F+E+ D +T+ ++ A +L L++G I + K
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 113 VKNDIFAGNALIDMYCKCT----VKF-----------TWTTMIVGLAISGNGDKALDMFS 157
+ D F AL+DMY KC +F TWT MI G A G +++L +F
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 158 QMLRASIKPDEVAYVGVLSA 177
+M + PD+VA V V+ A
Sbjct: 121 KMREEGVVPDKVAMVTVVFA 140
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 21/169 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA++ + V+ AR+ FD+M E++ + W+ MI Y + R+AL LF +
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S I+ ++ T+VS+L A ++ G +E G + + V+ D+ ++D+
Sbjct: 427 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDL------- 479
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+AL + M +++ DE + L A RTH
Sbjct: 480 ---------LGRAGRLDEALKLIESM---TVEKDEGLWGAFLGACRTHK 516
>gi|404357715|gb|AFR63850.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357717|gb|AFR63851.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357719|gb|AFR63852.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357721|gb|AFR63853.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357723|gb|AFR63854.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357725|gb|AFR63855.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357727|gb|AFR63856.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357729|gb|AFR63857.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357731|gb|AFR63858.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357733|gb|AFR63859.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357735|gb|AFR63860.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357737|gb|AFR63861.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357739|gb|AFR63862.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357741|gb|AFR63863.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357743|gb|AFR63864.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357747|gb|AFR63866.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357749|gb|AFR63867.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357751|gb|AFR63868.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357753|gb|AFR63869.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357755|gb|AFR63870.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357759|gb|AFR63872.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357761|gb|AFR63873.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357763|gb|AFR63874.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357765|gb|AFR63875.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357767|gb|AFR63876.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357769|gb|AFR63877.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357771|gb|AFR63878.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357773|gb|AFR63879.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357775|gb|AFR63880.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357777|gb|AFR63881.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLSDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+I+ A+V Y ++D A+ FD +P+RD V W T+I GY++ EA+ ++ ++Q
Sbjct: 304 DIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQ 363
Query: 75 T-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ + T VSIL A +NLGAL+ G + K + D++ LID+Y KC
Sbjct: 364 NHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKL 423
Query: 131 ---TVKFT---------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ F W +I GL + G+G KAL++FSQM + IKPD V +V +L+A
Sbjct: 424 VEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAAC 483
Query: 179 TH 180
+H
Sbjct: 484 SH 485
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V + ++V Y+ +V A + FD+MPERD W M+ G R R +A+ LF +
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMV 160
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ GD T+ S+L LG L + Y K + ++F NALID+Y K +
Sbjct: 161 GEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLV 220
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW ++I G A+++F M+++ + PD + V + SA
Sbjct: 221 EARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASA 278
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F M RD V W ++I Y + + A+ LF + S + D T+VS+ +A A
Sbjct: 222 ARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQ 281
Query: 95 LGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCTV---------------KFTWTT 138
G + + Y+ + DI AGNA++DMY K + +W T
Sbjct: 282 CGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNT 341
Query: 139 MIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSARTH 180
+I G +G ++A+ +++ M +KP + +V +L A ++
Sbjct: 342 LITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSN 384
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 19/169 (11%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N DV T ++ Y ++ A F+ MP R W +I G +AL LF +
Sbjct: 404 NLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQ 463
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+Q I D T VS+L A ++ G ++ G +++ D + +Y +
Sbjct: 464 MQQEGIKPDNVTFVSLLAACSHAGLVDQG---RSFFD------------LMQTVYGIVPI 508
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+ M+ L +G D+A + M IKPD + +L A R H
Sbjct: 509 AKHYACMVDMLGRAGQLDEAFEFIQGM---PIKPDSAVWGALLGACRIH 554
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD++S+ AI+SGY+N ++D A+ F++MPER+ + WT MI G + E
Sbjct: 351 QVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEE 410
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L LF +++ ++ + A A L AL G + + + + + AGNALI
Sbjct: 411 SLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALIT 470
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V +W MI L G+G +AL++F ML+ I PD +
Sbjct: 471 MYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRIT 530
Query: 171 YVGVLSARTH 180
++ VLS +H
Sbjct: 531 FLTVLSTCSH 540
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 50/227 (22%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F M +D +S+T +++GY+ ++D ARQ D M E+ V W MI GY+
Sbjct: 210 MAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHH 269
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN----D 116
F EAL +F+++ I DEFT S+L+A AN G G+ + YI + + +
Sbjct: 270 GFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFS 329
Query: 117 IFAGNALIDMYCKC-------------TVK------------------------------ 133
+ NAL +Y KC VK
Sbjct: 330 LSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPE 389
Query: 134 ---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWT MI GLA +G G+++L +F++M +P + A+ G + A
Sbjct: 390 RNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 58/230 (25%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRF 63
+F ++ D+++ T +++ + + ++AR+ F P RD V + MI GY N
Sbjct: 71 HLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDG 130
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-LGEWIKTYIDKNKVKNDIFAGNA 122
A+ LF+++ + D FT S+L A A + E + I + K+ NA
Sbjct: 131 FGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA 190
Query: 123 LIDMYCKCTV------------------------KFTWTTMIVGLAISGNGD-------- 150
L+ ++ KC + +WTTMI G +G D
Sbjct: 191 LLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDG 250
Query: 151 -----------------------KALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL+MF +M I+ DE Y VLSA
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y V+ A F MP D V W MI + +AL LF+ + +I+
Sbjct: 467 ALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILP 526
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKCTVKFT- 135
D T +++L+ ++ G +E G Y I G +ID+ C+ KF+
Sbjct: 527 DRITFLTVLSTCSHAGLVEEGH---RYFKSMSGLYGICPGEDHYARMIDLLCRAG-KFSE 582
Query: 136 ----------------WTTMIVGLAISGNGD 150
W ++ G I GN D
Sbjct: 583 AKDMIETMPVEPGPPIWEALLAGCRIHGNMD 613
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+++ ++ A++S Y + AR FD+MPERD V W TMI GY + + A+ LF+E
Sbjct: 251 SRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQNGQSAMAIELFKE 310
Query: 73 -IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC- 130
I + DE T+VSI++A +LGALELG WI +I + +++ I NALI MY KC
Sbjct: 311 MIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFISEYRIELTISGYNALIFMYSKCG 370
Query: 131 TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+K ++ ++I G A G G++A+ + M + PD V Y+GVL+
Sbjct: 371 NMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLSMKEEGVDPDHVTYIGVLT 430
Query: 177 ARTH 180
A +H
Sbjct: 431 ACSH 434
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++VI++TA+V+G+ +++D AR+ FD MP ++ V W +I GY + EA
Sbjct: 112 LFSMTPERNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGYAQNGFVEEA 171
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF + + +E T +++++ ++ G E +DK K+K + F AL+DM
Sbjct: 172 LKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTALLDM 231
Query: 127 YCKCTV-----------------------------------------------KFTWTTM 139
KC +W TM
Sbjct: 232 NAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTM 291
Query: 140 IVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
I G A +G A+++F +M+ A +PDEV V ++SA H
Sbjct: 292 ISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGH 333
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 24/175 (13%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F I D I+ Y ++ AR+ FD+M ER W +MI GY +
Sbjct: 46 FHAHILKLGHQSDPYIRNVILDMYAKHSLIENARKLFDEMTERSLADWNSMICGYWKCGN 105
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA +LF N++ T +++T + + L+ + Y D VKN +
Sbjct: 106 ETEACSLFSMTPERNVI----TWTAMVTGFSKIKELDSA---RKYFDDMPVKNIV----- 153
Query: 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W +I G A +G ++AL +F+ M+R ++P+E + V+S+
Sbjct: 154 ------------SWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISS 196
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ Y A++ Y + A++ F +M RD V + ++I G+ EA+ L ++
Sbjct: 356 ISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLSMKE 415
Query: 76 SNIMGDEFTIVSILTARANLGALELG 101
+ D T + +LTA ++ G +E G
Sbjct: 416 EGVDPDHVTYIGVLTACSHAGLVEEG 441
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M ++ S+ +++GYI +++ A++ F +MP RD V W+TMI G F E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ F+E+Q + + +E ++ +L+A + G+ E G+ + +++K + NALID
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY +C +WT+MI GLA+ G G++A+ +F++M + PD +
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 170 AYVGVLSARTH 180
+++ +L A +H
Sbjct: 373 SFISLLHACSH 383
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F+ M E R V WT+MI G + EA+ LF E+ +
Sbjct: 309 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 368
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK----VKNDIFAGNALIDMYCKCTVKFT 135
D + +S+L A ++ G +E GE Y + K ++ +I ++D+Y +
Sbjct: 369 PDGISFISLLHACSHAGLIEEGE---DYFSEMKRVYHIEPEIEHYGCMVDLYGR------ 419
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
SG KA D QM I P + + +L A
Sbjct: 420 ----------SGKLQKAYDFICQM---PIPPTAIVWRTLLGA 448
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARA 93
AR+ PE D ++ T++ GY + ++ +F E+ + D F+ ++ A
Sbjct: 58 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
N +L G + K+ +++ +F G LI MY C
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC 154
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M ++ S+ +++GYI +++ A++ F +MP RD V W+TMI G F E
Sbjct: 185 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 244
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ F+E+Q + + +E ++ +L+A + G+ E G+ + +++K + NALID
Sbjct: 245 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 304
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY +C +WT+MI GLA+ G G++A+ +F++M + PD +
Sbjct: 305 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 364
Query: 170 AYVGVLSARTH 180
+++ +L A +H
Sbjct: 365 SFISLLHACSH 375
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F+ M E R V WT+MI G + EA+ LF E+ +
Sbjct: 301 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 360
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK----VKNDIFAGNALIDMYCKCTVKFT 135
D + +S+L A ++ G +E GE Y + K ++ +I ++D+Y +
Sbjct: 361 PDGISFISLLHACSHAGLIEEGE---DYFSEMKRVYHIEPEIEHYGCMVDLYGR------ 411
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
SG KA D QM I P + + +L A
Sbjct: 412 ----------SGKLQKAYDFICQM---PIPPTAIVWRTLLGA 440
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARA 93
AR+ PE D ++ T++ GY + ++ +F E+ + D F+ ++ A
Sbjct: 50 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 109
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
N +L G + K+ +++ +F G LI MY C
Sbjct: 110 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC 146
>gi|212722054|ref|NP_001132129.1| uncharacterized protein LOC100193546 [Zea mays]
gi|194693506|gb|ACF80837.1| unknown [Zea mays]
gi|413926460|gb|AFW66392.1| hypothetical protein ZEAMMB73_680096 [Zea mays]
Length = 473
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 112/202 (55%), Gaps = 23/202 (11%)
Query: 2 GFTL------EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMID 55
GFTL + F N V + TA+++ Y+ V A + F++MP +D V WT+M+
Sbjct: 132 GFTLCQSLHGQGFRLGYNCHVFTQTALLNAYLKCGSVATACRVFEEMPVKDVVAWTSMVS 191
Query: 56 GYLRVNRFREALTLFQEIQTSN--IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV 113
GY+ + +A+ +F E++ ++ + +E T+VS+ TA A LG+LE + + +Y++K +
Sbjct: 192 GYVDSRMYLKAVEVFNEMRGADDLVWPNEATVVSLATACAGLGSLEHAKGLHSYVEKAGL 251
Query: 114 KNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
++++ NAL+DMY KC +WTTMI GL+ G G++A+ +F
Sbjct: 252 EDELIVRNALVDMYGKCGCIESAHRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFS 311
Query: 159 MLRASIKPDEVAYVGVLSARTH 180
M + PD ++ VLSA +H
Sbjct: 312 MCEEGVLPDSTTFIVVLSACSH 333
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I A+V Y ++ A + F M E+D WTTMI G R EA+ LF +
Sbjct: 254 ELIVRNALVDMYGKCGCIESAHRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFSMC 313
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFAGNALIDMYCK 129
++ D T + +L+A ++ G ++ G I ++ ++ V D ++D++ +
Sbjct: 314 EEGVLPDSTTFIVVLSACSHAGLVDEGIHIFNSMESEHNVPRDTKHYGCMVDLFSR 369
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F +M +++ S+ +++GY + AR+ FD MP+RD V W +I GY +
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL +F EI+ + T L+ A++ ALELG+ I K F G
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+ MY KC +W TM+ G A G G +AL +F M A +K
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 166 PDEVAYVGVLSARTH 180
PDE+ VGVLSA +H
Sbjct: 493 PDEITMVGVLSACSH 507
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F TM + +SY A++SGY+ + ++AR FDQMPERD W M+ GY+R R
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+A LF + +++ + S+L+ A G ++ + D KN I + N L
Sbjct: 128 GDARRLFDLMPEKDVV----SWNSLLSGYAQNGYVDEA---REVFDNMPEKNSI-SWNGL 179
Query: 124 IDMY 127
+ Y
Sbjct: 180 LAAY 183
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M KDV+S+ +++SGY VD AR+ FD MPE++ + W ++ Y+
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R EA LF+ +++ ++ + LG W+ DK V+ D +
Sbjct: 187 GRIEEACLLFESKSDWDLISWN-CLMGGFVRKKKLGD---ARWL---FDKMPVR-DAISW 238
Query: 121 NALIDMYCK---------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N +I Y + FTWT M+ G +G D+A F +M +
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PE 294
Query: 166 PDEVAYVGVLSA 177
+EV+Y +++
Sbjct: 295 KNEVSYNAMIAG 306
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 24/153 (15%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +DV ++TA+VSGY+ +D A+ FD+MPE++ V + MI GY++ + A
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIA 316
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ + NI + +++T +G DI DM
Sbjct: 317 RELFESMPCRNIS----SWNTMITGYGQIG-------------------DIAQARKFFDM 353
Query: 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+ +W +I G A SG+ ++AL+MF ++
Sbjct: 354 MPQRDC-VSWAAIIAGYAQSGHYEEALNMFVEI 385
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y +D A F+ + E+D V W TM+ GY R R+ALT+F+ ++T+ +
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T+V +L+A ++ G L+ G
Sbjct: 493 PDEITMVGVLSACSHTGLLDRG 514
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D+ S+ +++GY+ ++ AR+ FD MPE+D V W +++ GY + EA
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID- 125
+F + N + +L A + G +E + ++K D+ + N L+
Sbjct: 162 REVFDNMPEKN----SISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGG 213
Query: 126 ------------MYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQ 158
++ K V+ +W TMI G A G +A +F +
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+K+ D++ + +S ++ D A F+ MP R V + MI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ ++ F+ +LT Y+ ++ + L D+ +
Sbjct: 104 DQMPERDL----FSWNVMLTG---------------YVRNCRLGD----ARRLFDLMPEK 140
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
V +W +++ G A +G D+A ++F M + + +++ G+L+A HN
Sbjct: 141 DV-VSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHN 186
>gi|357432720|gb|AET79037.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWXHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 20/190 (10%)
Query: 11 MKNKDVISY---TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
++NK ++Y +A++ Y + AR+ FD M ++D V W MI GY + EA+
Sbjct: 255 VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAI 314
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LFQ+++ S+ D+ T++ IL+A A++GAL+LG+ ++ Y + ++D++ G AL+DMY
Sbjct: 315 KLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMY 374
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVA 170
KC + +W MI LA G +AL +F M+ ++ P+++
Sbjct: 375 AKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDIT 434
Query: 171 YVGVLSARTH 180
+VGVLSA H
Sbjct: 435 FVGVLSACVH 444
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++++ Y ++ AR+ FD++ ++D V W +MI GY ++ EA+ LF+E+ +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
+E ++VS+L A LG L+LG W++ ++ +NK+ + F G+ALI MY KC
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 131 -----TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
K TW MI G A +G ++A+ +F M +S PD++ +G+LSA
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSA 338
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N+ AL + ++ + + T + A +NL A+E G + + + D
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165
Query: 121 NALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
++LI MY +C +W +MI G + + +A+ +F +M+ A +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 166 PDEVAYVGVLSA 177
P+E++ V VL A
Sbjct: 226 PNEMSLVSVLGA 237
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 20/190 (10%)
Query: 11 MKNKDVISY---TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
++NK ++Y +A++ Y + AR+ FD M ++D V W MI GY + EA+
Sbjct: 255 VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAI 314
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LFQ+++ S+ D+ T++ IL+A A++GAL+LG+ ++ Y + ++D++ G AL+DMY
Sbjct: 315 KLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMY 374
Query: 128 CKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVA 170
KC + +W MI LA G +AL +F M+ ++ P+++
Sbjct: 375 AKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDIT 434
Query: 171 YVGVLSARTH 180
+VGVLSA H
Sbjct: 435 FVGVLSACVH 444
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
++++ Y ++ AR+ FD++ ++D V W +MI GY ++ EA+ LF+E+ +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
+E ++VS+L A LG L+LG W++ ++ +NK+ + F G+ALI MY KC
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 131 -----TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
K TW MI G A +G ++A+ +F M +S PD++ +G+LSA
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSA 338
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
N+ AL + ++ + + T + A +NL A+E G + + + D
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165
Query: 121 NALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
++LI MY +C +W +MI G + + +A+ +F +M+ A +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 166 PDEVAYVGVLSA 177
P+E++ V VL A
Sbjct: 226 PNEMSLVSVLGA 237
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +R + AL LF+E+Q
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ + V D+ N+LI+MYCKC
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 175 LSARTH 180
L A H
Sbjct: 364 LIACNH 369
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ +++ GY V++AR FD MP+R V W ++ Y ++ +RE
Sbjct: 240 KMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRE 299
Query: 66 ALTLFQ-EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNA 122
L LF I N + +E T VS+LTA ANLG LE G W+ + + +++ D+
Sbjct: 300 CLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTT 359
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+ MY KC V T W +MI+G + G +KAL++F +M R +P+
Sbjct: 360 LLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPN 419
Query: 168 EVAYVGVLSARTH 180
E ++ VLS+ H
Sbjct: 420 ETTFICVLSSCAH 432
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ AR+ F+ M E+ W +MI GY + +AL LF E++ +E T + +L++
Sbjct: 370 METAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSS 429
Query: 92 RANLGALELGEW 103
A+ G + G W
Sbjct: 430 CAHGGLVLEGWW 441
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ +P D V W T++ LR+ A LF E+ +++ ++V+ A +
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYN-SMVAGYVAEGD 203
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
L ++F G A D+ TW +MI G + G+ + A
Sbjct: 204 LAG----------------ARNLFDGMARRDV-------VTWNSMISGYSRHGDMENARK 240
Query: 155 MFSQM 159
MF M
Sbjct: 241 MFDAM 245
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F +M +++ S+ +++GY + AR+ FD MP+RD V W +I GY +
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQS 372
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL +F EI+ + T L+ A++ ALELG+ I K F G
Sbjct: 373 GHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVG 432
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+ MY KC +W TM+ G A G G +AL +F M A +K
Sbjct: 433 NALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVK 492
Query: 166 PDEVAYVGVLSARTH 180
PDE+ VGVLSA +H
Sbjct: 493 PDEITMVGVLSACSH 507
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F TM + +SY A++SGY+ + ++AR FDQMPERD W M+ GY+R R
Sbjct: 68 ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRL 127
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGAL-ELGEWIKTYIDKNKVK-NDIFAG- 120
+A LF + +++ + S+L+ A G + E E +KN + N + A
Sbjct: 128 GDARRLFDLMPEKDVV----SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAY 183
Query: 121 --NALIDMYC 128
N I+ C
Sbjct: 184 VHNGRIEEAC 193
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M KDV+S+ +++SGY VD AR+ FD MPE++ + W ++ Y+
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
R EA LF+ +++ ++ + LG W+ DK V+ D +
Sbjct: 187 GRIEEACLLFESKSDWDLISWN-CLMGGFVRKKKLGD---ARWL---FDKMPVR-DAISW 238
Query: 121 NALIDMYCK---------------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N +I Y + FTWT M+ G +G D+A F +M +
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PE 294
Query: 166 PDEVAYVGVLSA 177
+EV+Y +++
Sbjct: 295 KNEVSYNAMIAG 306
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 28/155 (18%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +DV ++TA+VSGY+ +D A+ FD+MPE++ V + MI GY++ + A
Sbjct: 257 LFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIA 316
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF+ + NI + +++T +G DI DM
Sbjct: 317 RELFESMPCRNIS----SWNTMITGYGQIG-------------------DIAQARKFFDM 353
Query: 127 YCK--CTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
+ C +W +I G A SG+ ++AL+MF ++
Sbjct: 354 MPQRDCV---SWAAIIAGYAQSGHYEEALNMFVEI 385
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+++ Y +D A F+ + E+D V W TM+ GY R R+ALT+F+ ++T+ +
Sbjct: 434 ALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493
Query: 81 DEFTIVSILTARANLGALELG 101
DE T+V +L+A ++ G L+ G
Sbjct: 494 DEITMVGVLSACSHTGLLDRG 514
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D+ S+ +++GY+ ++ AR+ FD MPE+D V W +++ GY + EA
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEA 161
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID- 125
+F + N + +L A + G +E + ++K D+ + N L+
Sbjct: 162 REVFDNMPEKN----SISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGG 213
Query: 126 ------------MYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQ 158
++ K V+ +W TMI G A G +A +F +
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
+K+ D++ + +S ++ D A F+ MP R V + MI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ ++ F+ +LT Y+ ++ + L D+ +
Sbjct: 104 DQMPERDL----FSWNVMLTG---------------YVRNCRLGD----ARRLFDLMPEK 140
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
V +W +++ G A +G D+A ++F M + + +++ G+L+A HN
Sbjct: 141 DV-VSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHN 186
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+S+ +++ GY V++AR FD MP+R V W ++ Y ++ +RE
Sbjct: 240 KMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRE 299
Query: 66 ALTLFQ-EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNA 122
L LF I N + +E T VS+LTA ANLG LE G W+ + + +++ D+
Sbjct: 300 CLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTT 359
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+ MY KC V T W +MI+G + G +KAL++F +M R +P+
Sbjct: 360 LLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPN 419
Query: 168 EVAYVGVLSARTH 180
E ++ VLS+ H
Sbjct: 420 ETTFICVLSSCAH 432
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ AR+ F+ M E+ W +MI GY + +AL LF E++ +E T + +L++
Sbjct: 370 METAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSS 429
Query: 92 RANLGALELGEW 103
A+ G + G W
Sbjct: 430 CAHGGLVLEGWW 441
Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ +P D V W T++ LR+ A LF E+ +++ ++V+ A +
Sbjct: 145 ARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYN-SMVAGYVAEGD 203
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
L ++F G A D+ TW +MI G + G+ + A
Sbjct: 204 LAG----------------ARNLFDGMARRDV-------VTWNSMISGYSRHGDMENARK 240
Query: 155 MFSQM 159
MF M
Sbjct: 241 MFDAM 245
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +R + AL LF+E+Q
Sbjct: 176 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 235
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ + V D+ N+LI+MYCKC
Sbjct: 236 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354
Query: 175 LSARTH 180
L A H
Sbjct: 355 LIACNH 360
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +R + AL LF+E+Q
Sbjct: 242 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 301
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ + V D+ N+LI+MYCKC
Sbjct: 302 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420
Query: 175 LSARTH 180
L A H
Sbjct: 421 LIACNH 426
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 26/206 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M + V+S+TA++SGY D A + F+ MPERD W +I G +
Sbjct: 195 IGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQN 254
Query: 61 NRFREALTLFQEIQTSNIMG---------DEFTIVSILTARANLGALELGEWIKTYIDKN 111
F EA+ LF+ + + G ++ T+ S L+A + G L LG+WI Y+ K
Sbjct: 255 GFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKT 314
Query: 112 KVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMF 156
D F NAL+DMY KC T+K +W ++I LA+ G+ A+D+F
Sbjct: 315 YPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLF 374
Query: 157 SQMLRA--SIKPDEVAYVGVLSARTH 180
++++ +KP+EV +VGVL+A TH
Sbjct: 375 AELIHCGDGVKPNEVTFVGVLNACTH 400
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMGDEFTIVSILTARA 93
AR FD + + L+T MI Y + A L++ ++ I + F +L +
Sbjct: 95 ARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCP 154
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF----------------TWT 137
++ + + T + K+ A++D Y + + +WT
Sbjct: 155 DVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWT 214
Query: 138 TMIVGLAISGNGDKALDMFSQM 159
MI G A GN D A+++F M
Sbjct: 215 AMISGYARLGNFDSAIELFESM 236
>gi|357432728|gb|AET79041.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432734|gb|AET79044.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 1 ALRVFDESVSRDLPAWNSVINAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVXCGKY 60
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W YIDK +VK DI
Sbjct: 61 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWXHAYIDKYQVKIDIV 120
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 121 LGTALIDMYAKC 132
>gi|404357953|gb|AFR63969.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357957|gb|AFR63971.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|302816404|ref|XP_002989881.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
gi|300142447|gb|EFJ09148.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
Length = 353
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 17/194 (8%)
Query: 4 TLEIFGTMK-NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
LE+F +M+ K+V+S+TAIV+ +++D AR F++MP R+ V W +I GYL +R
Sbjct: 61 ALEVFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFNRMPIRNVVSWNAIITGYLDDDR 120
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+A+ L+ ++ + D T V++L A A++ L LG I ++ + + DI G A
Sbjct: 121 PPDAIDLYYRMRQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIDGDILVGTA 180
Query: 123 LIDMY--CKCTVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
L+ MY C CT W+ +I + GNG KAL++F ML I P
Sbjct: 181 LLSMYGRCGCTEMAIRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILP 240
Query: 167 DEVAYVGVLSARTH 180
+ V V VLSA +H
Sbjct: 241 NGVTLVSVLSACSH 254
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQ 71
+ D++ TA++S Y ++A + F MP R D V+W+ +I + +AL +F
Sbjct: 172 DGDILVGTALLSMYGRCGCTEMAIRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFH 231
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELG 101
+ I+ + T+VS+L+A +++GA+E G
Sbjct: 232 GMLLDGILPNGVTLVSVLSACSHIGAVEKG 261
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCKCTVK----- 133
DE T+VS + A A+ G L +G + + + + D GN+LI++Y KC +
Sbjct: 4 DEVTVVSAIDACAHQGDLAMGIAVHSDLASSGGIEIEDAAVGNSLINLYGKCRMAEEALE 63
Query: 134 -----------FTWTTMIVGLAISGNGDKALDMFSQM 159
+WT ++ LA + D+A D+F++M
Sbjct: 64 VFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFNRM 100
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F +M ++ S++ ++ GY++ +++ A+Q F+ MPE++ V WTT+I+G+ +
Sbjct: 212 MQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A++ + E+ + +E+T+ ++L+A + GAL G I YI N +K D G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 121 NALIDMYCKC-------TV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+L+DMY KC TV +WT MI G A+ G +A+ F QM+ + K
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 166 PDEVAYVGVLSA 177
PDEV ++ VL+A
Sbjct: 392 PDEVVFLAVLTA 403
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 37/179 (20%)
Query: 9 GTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPER----DYVLWTTMIDGYLRVN 61
T+KN D ++V Y Q++ A Q F++ P+R +LW +++GY R
Sbjct: 151 ATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAK 210
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKNDIF 118
+ A TLF+ + N G W IK Y+D ++
Sbjct: 211 DMQMATTLFRSMPERNS----------------------GSWSTLIKGYVDNGELNR--- 245
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L ++ + V +WTT+I G + +G+ + A+ + +ML +KP+E VLSA
Sbjct: 246 -AKQLFELMPEKNV-VSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSA 302
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T+++ Y +VD A F M +D + WT MI G+ RF +A+ F+++ S
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 GDEFTIVSILTARANLGALELG 101
DE +++LTA N G ++LG
Sbjct: 392 PDEVVFLAVLTACLNSGEVDLG 413
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
D + F ER+ ++ +I G RF ++ F + T + D T +L +
Sbjct: 77 DYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSN 136
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ LG LG + KN V D F +L+DMY K
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAK 173
>gi|404357587|gb|AFR63786.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357591|gb|AFR63788.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHAYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|404357563|gb|AFR63774.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357565|gb|AFR63775.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357585|gb|AFR63785.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA + Y ++D+AR FD+ PE+ V W MI GY + A++LF+E+ +
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+ TI +IL+A A LG+L G+W+ I ++ +I+ AL+DMY KC
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQL 468
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW TMI G + G G +AL ++++ML P V ++ VL A +H
Sbjct: 469 FDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSH 524
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y +V AR+ FD MPERD VLW TMI+G ++ F +++ LF+E+ +
Sbjct: 147 SALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVR 206
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVKF- 134
D T+ ++L A A L L++G I+ K + LI +Y KC T +
Sbjct: 207 VDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLL 266
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+ MI G +G + ++ +F ++L + + VG++ +
Sbjct: 267 FRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHS 321
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 17/174 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++S Y V+ AR F ++ D + + MI G+ ++ LF+E+ S
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKV----------------KNDIFAGNAL 123
TIV ++ + G L L I + K+ + N+I L
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL 367
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
D + TV W MI G +G+ + A+ +F +M++ P+ V +LSA
Sbjct: 368 FDESPEKTV-VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSA 420
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ + T + + AR F +P+ D L+ ++ G+ + +++L+ ++
Sbjct: 43 DLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLR 102
Query: 75 -TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+N+ D FT + A +N L L + + + +++F G+AL+D+YCK +
Sbjct: 103 RNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRV 159
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W TMI GL + D ++ +F +M+ ++ D VL A
Sbjct: 160 VYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPA 218
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y + A Q FD M E++ V W TMI GY EAL L+ E+
Sbjct: 450 TALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN 509
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T +S+L A ++ G + GE I ++K +++ LI+ Y
Sbjct: 510 PSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE-------PLIEHY---------AC 553
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
M+ L SG +KAL+ +M ++P + +L A
Sbjct: 554 MVDILGRSGQLEKALEFIKKM---PVEPGPAVWGTLLGA 589
>gi|404357577|gb|AFR63781.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +R + AL LF+E+Q
Sbjct: 162 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 221
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ + V D+ N+LI+MYCKC
Sbjct: 222 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340
Query: 175 LSARTH 180
L A H
Sbjct: 341 LIACNH 346
>gi|404357617|gb|AFR63801.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++ +A LGALE G+W+ YIDK +V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVFSACGRLGALEQGKWVHAYIDKYRVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+ F M NK+VIS+ ++ GYI + AR FDQMP ++ V W+TMI GY R + +
Sbjct: 281 DFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLK 340
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+ + +I DE I+ I++A + LG ++ E I + +D+ +LID
Sbjct: 341 ALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLID 400
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC ++TMI LA G G A+ +F +M RA+IKPD V
Sbjct: 401 MYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVT 460
Query: 171 YVGVLSARTH 180
++GVL+A H
Sbjct: 461 FLGVLTACNH 470
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 40/211 (18%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+ F M KD++S+ ++SGY N ++VDIAR+ FD+MPER+ V WT+MI GY++ E
Sbjct: 157 QAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAE 216
Query: 66 ALTLF-----QEIQTSNIMGDEFT-IVSILTARANLGALEL---GEW------------- 103
A LF +++ + N+M + I + AR G + + G W
Sbjct: 217 AQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGEL 276
Query: 104 --IKTYIDKNKVKNDIFAGNALIDMYCK--------CTVK-------FTWTTMIVGLAIS 146
K + D+ KN I G ++D Y K C TW+TMI G A +
Sbjct: 277 ESAKDFFDRMPNKNVISWG-IMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARN 335
Query: 147 GNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G KAL++F + IKPDE +G++SA
Sbjct: 336 GQPLKALELFERFKEQDIKPDETFILGIISA 366
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
D A + FD++ + + LWT++I GY+ ++ EA +LF +++ I FTI S+L A
Sbjct: 52 DYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKAL 111
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVK-----------FTWT 137
A L + G+ + ++ K D+ N+++D++ +C T + +W
Sbjct: 112 ARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWN 171
Query: 138 TMIVGLAISGNGDKALDMFSQM 159
MI G + D A F +M
Sbjct: 172 MMISGYGNNDRVDIARKFFDRM 193
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ +T+++ Y ++ A Q F+ +D + ++TMI R+A+ LF ++Q
Sbjct: 391 DLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQ 450
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+NI D T + +LTA + G ++ G
Sbjct: 451 RANIKPDSVTFLGVLTACNHGGLVDEG 477
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S TA+++ Y + V+ AR FD+M ERD V W MIDGY + +
Sbjct: 180 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSD 239
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LFQ+ + DE T+V+ L+A + +GALE G WI +++ ++++ ++ ALI
Sbjct: 240 ALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALI 299
Query: 125 DMYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDE 168
DMY KC T + W MI G A+ G AL +F +M ++P +
Sbjct: 300 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTD 359
Query: 169 VAYVGVLSARTH 180
+ ++G L A H
Sbjct: 360 ITFIGTLQACAH 371
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G + V+S TA++S Y Q+D AR FD +P +D V W M+DGY + R EAL
Sbjct: 181 GMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALR 240
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI----DKNKVKNDIFAGNALI 124
LF+++ S + DE ++V L+A A LG E G W+ +++ + +V+ + G AL+
Sbjct: 241 LFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALV 300
Query: 125 DMYCKCTV------------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
DMY KC W MI G A+ G +AL+ F Q+ + P
Sbjct: 301 DMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWP 360
Query: 167 DEVAYVGVLSARTHN 181
++ ++GVL+A +H+
Sbjct: 361 TDITFIGVLNACSHS 375
Score = 43.1 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 22/165 (13%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP---ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y ++ A F + +RD V W MI+GY R REAL F +++
Sbjct: 297 TALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQ 356
Query: 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTW 136
+ + T + +L A ++ G ++ G +FA A+ + Y +
Sbjct: 357 GLWPTDITFIGVLNACSHSGLVDEGR-------------ALFA--AMEEEYGIVPKVEHY 401
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
M+ L +G ++A D+ M KPD + +L A R H
Sbjct: 402 GCMVDLLGRAGRVEEAFDLVQSM---KAKPDAAMWASLLGACRLH 443
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 21/184 (11%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ S+ A++SG ++R + ARQ FD MPERD + W+T++ GY++ +AL LF +
Sbjct: 343 IASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLG 402
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK--NDIFAGNALIDMYCKCT-- 131
+ + ++ T+ S L+A A+ G LE G +I YI N ++ +++ AG LIDMY KC
Sbjct: 403 AGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNLSAG--LIDMYAKCGSV 460
Query: 132 ---------VKFT------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
VK W +I LAI G+ +L++F ++ R +IKP+ V Y+GVL+
Sbjct: 461 ADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLN 520
Query: 177 ARTH 180
A H
Sbjct: 521 ACCH 524
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 47/222 (21%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F EIF M +K+ +++ A+++GY+ + +A + F ++PERD V W T+IDGY+R +
Sbjct: 197 FAREIFEQMPDKNTVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADC 256
Query: 63 FREALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
EAL + + + G+ +V ++ A A+ G+ + T I K+ F
Sbjct: 257 TSEALRAYVAMMAEVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQA 316
Query: 122 ALIDMYCKCTV----------------------------------------------KFT 135
LI Y C + +
Sbjct: 317 TLIHFYGSCDLLDIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDDMPERDTIS 376
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+T++ G SG+ +KAL +F ML A ++P++V LSA
Sbjct: 377 WSTLLSGYVQSGHSNKALQLFYLMLGAGVEPNDVTLASTLSA 418
Score = 42.7 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D ++ +++ ++D+A+ +MP+RD V +TT++ R +A+ +F+ +
Sbjct: 76 RDPAAHNTLLASLARAGRLDLAQGMLAEMPQRDTVSYTTVLTALARAGHAEDAVAVFRGM 135
Query: 74 QTSNIMGDEFTIVSILTARA 93
++ +E T+ +LTA A
Sbjct: 136 LAQDVPPNEVTLAGVLTALA 155
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++TT++ LA +G+ + A+ +F ML + P+EV GVL+A
Sbjct: 111 SYTTVLTALARAGHAEDAVAVFRGMLAQDVPPNEVTLAGVLTA 153
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M +DV+++T +VSGY + A + F +MPE++ V WT +I GY R
Sbjct: 243 MGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARN 302
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL LF ++ ++ D+FT S L A A++ +L+ G+ I Y+ + + +
Sbjct: 303 GMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVV 362
Query: 121 NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+ALIDMY KC W T+I LA G G++A+ M M+R+
Sbjct: 363 SALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGA 422
Query: 165 KPDEVAYVGVLSARTHN 181
KPD++ +V +L+A +H+
Sbjct: 423 KPDKITFVVILNACSHS 439
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ ++SGY + AR+ FD+MPE+D V W TM+ + + + E
Sbjct: 116 KVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDE 175
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL + E + I + F+ +LT L + L + I +++ ++++D
Sbjct: 176 ALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLD 235
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y KC + +WT +
Sbjct: 236 AYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTAL 295
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A +G G KAL++F++M+ ++PD+ + L A
Sbjct: 296 ISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333
Score = 39.7 bits (91), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
P R L ++ + N+ EA++ + + + D T+ S+L A+ AL G+
Sbjct: 21 PRRRPCLVEAIVK-LCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGK 79
Query: 103 WIKTYIDKNKVKND-IFAGNALIDMYCKCTVK---------------FTWTTMIVGLAIS 146
+ ++ +K F N LI+MY KC + ++W M+ G A
Sbjct: 80 RVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139
Query: 147 GNGDKALDMFSQM 159
G A +F +M
Sbjct: 140 GMIKPARKLFDKM 152
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEI 73
+ I +A++ Y + I R+ FD M + D VLW T+I + EA+ + ++
Sbjct: 358 NTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDM 417
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG 101
S D+ T V IL A ++ G ++ G
Sbjct: 418 VRSGAKPDKITFVVILNACSHSGLVQQG 445
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 103/195 (52%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V+S T++VSGY V AR F +M +R+ V W +I GY + EA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK------NKVKNDIFAG 120
L LF+ ++ +I +T ++L+A ANL L LG T++ K + ++DIF G
Sbjct: 366 LRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVG 425
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +W +IVG A +G G +AL +F +ML K
Sbjct: 426 NSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEK 485
Query: 166 PDEVAYVGVLSARTH 180
PD V +GVL A +H
Sbjct: 486 PDHVTMIGVLCACSH 500
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ ++ +++S +D A + F MPE D W +M+ G+ + +RF E
Sbjct: 71 KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+L F ++ + + +E++ S L+A A L L +G + + K++ D++ G+ALID
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC TW ++I +G +AL++F +M+ + ++PDEV
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250
Query: 171 YVGVLSA 177
V+SA
Sbjct: 251 LASVVSA 257
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 47/210 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A++ Y V A + F M ER+ V W ++I Y + EAL +F +
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCT-- 131
S + DE T+ S+++A A+L AL+ G I + K NK ++D+ GNAL+DMY KC+
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 132 ---------------------------------VKF-----------TWTTMIVGLAISG 147
+F +W +I G +G
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++AL +F + R SI P + +LSA
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSA 390
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + D+ +++ Y+ ++ + F++M ERD V W +I GY + EAL
Sbjct: 414 FQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEAL 473
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F+++ D T++ +L A ++ G +E G +++ + LI +
Sbjct: 474 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE----------HGLIPL- 522
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
K +T M+ L +G ++A ++ M + PD V + +L+A
Sbjct: 523 -----KDHYTCMVDLLGRAGCLNEAKNLIEAM---PVNPDAVVWGSLLAA 564
>gi|341606385|gb|AEK83295.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ TYIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHTYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|404357961|gb|AFR63973.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357965|gb|AFR63975.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357967|gb|AFR63976.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357979|gb|AFR63982.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357983|gb|AFR63984.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|357432708|gb|AET79031.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432710|gb|AET79032.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432712|gb|AET79033.1| At3g62890-like protein [Arabidopsis halleri]
gi|357432714|gb|AET79034.1| At3g62890-like protein [Arabidopsis halleri]
Length = 151
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 85/129 (65%), Gaps = 5/129 (3%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++D+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ +++EA
Sbjct: 4 VFDESVSRDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKYKEA 63
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK +VK DI G
Sbjct: 64 LDLFREMQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIVLGT 123
Query: 122 ALIDMYCKC 130
ALIDMY KC
Sbjct: 124 ALIDMYAKC 132
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M DV+++ ++V G + +D+A F +M R+ + W ++I G + +E
Sbjct: 182 KVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKE 241
Query: 66 ALTLFQEIQTSN---IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+L LF E+Q + + D+ TI S+L+A A LGA++ G+W+ Y+ +N ++ D+ G A
Sbjct: 242 SLELFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTA 301
Query: 123 LIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L++MY KC WT MI A+ G G KA + F +M +A +KP+
Sbjct: 302 LVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPN 361
Query: 168 EVAYVGVLSARTHN 181
V +VG+LSA H+
Sbjct: 362 HVTFVGLLSACAHS 375
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ TA+V+ Y V A + F++MPE+D WT MI + +A F E++
Sbjct: 295 DVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEME 354
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEW 103
+ + + T V +L+A A+ G +E G W
Sbjct: 355 KAGVKPNHVTFVGLLSACAHSGLVEQGRW 383
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 41/172 (23%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ +F +KN D+ +Y ++ YI+ E D C
Sbjct: 73 YATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFC------------------------ 108
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
+AL L++++ +I+ + T +L G+ I T + K D++ N+
Sbjct: 109 --KALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANS 166
Query: 123 LIDMYCK---------------CTVKFTWTTMIVGLAISGNGDKALDMFSQM 159
LI +Y T TW +M++G +G D A+D+F +M
Sbjct: 167 LISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKM 218
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D A+VS Y V IAR+ FD+MPE+ V W +MI GY + +EA+ LF +Q
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ D T VS+L+A A +GA+ LG W+ YI +N ++ G AL++MY +C
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
WT MI G + G+G +A+++F++M +P+ V +V VLSA
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA 331
Query: 180 H 180
H
Sbjct: 332 H 332
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
Y + R+ F +P+ D L+ ++I + + +E+L ++ + +NI +T
Sbjct: 61 AYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYT 120
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------- 130
+++ + A+L A +GE I ++ D + AL+ Y K
Sbjct: 121 FSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMP 180
Query: 131 -TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI G +G G +A+++F M +KPD +V +LSA
Sbjct: 181 EKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSA 228
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V+ TA+++ Y V AR+ FD M E++ V WT MI GY +A+ LF E+
Sbjct: 253 NVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMS 312
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-----KVKNDIFAGNALIDMYCK 129
+ T V++L+A A+ G ++ G I T + + V++ + ++DM +
Sbjct: 313 FDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQV----CMVDMLGR 368
Query: 130 C-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
WT M+ + N D +++ +L SI+P+ +
Sbjct: 369 AGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SIEPENPGHY 426
Query: 173 GVLS 176
+LS
Sbjct: 427 VMLS 430
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 95/161 (59%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F+ M RD V W ++I+G+ EALTL++E+ + + D FT+VS+L+A
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LGAL LGE + Y+ K + + A NAL+D+Y KC +WT++
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
IVGLA++G G++AL +F ++ R +KP E+ +VGVL A +H
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDEFTIVSILT 90
+ A Q F+Q+ + W TMI G+ A+ LF ++ S+I+ D T +
Sbjct: 85 MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A A L + LGE I + + +N + F N+L+ MY +
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVA 204
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W ++I G A++G ++AL ++ +M ++PD V +LSA
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARA 93
A++ FD+M ER V WT++I G L VN EAL LF E++ + E T V +L A +
Sbjct: 291 AQKVFDEMEERSVVSWTSLIVG-LAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349
Query: 94 NLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ G L+ G + + ++ + I ++D+ C+
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 95/161 (59%), Gaps = 15/161 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A Q F+ M RD V W ++I+G+ EALTL++E+ + + D FT+VS+L+A
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LGAL LGE + Y+ K + + A NAL+D+Y KC +WT++
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
IVGLA++G G++AL +F ++ R +KP E+ +VGVL A +H
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDEFTIVSILT 90
+ A Q F+Q+ + W TMI G+ A+ LF ++ S+I+ D T +
Sbjct: 85 MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC---------------KCTVKFT 135
A A L + LGE I + + +N + F N+L+ MY +
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVA 204
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W ++I G A++G ++AL ++ +M ++PD V +LSA
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSA 246
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILTARA 93
A++ FD+M ER V WT++I G L VN EAL LF E++ + E T V +L A +
Sbjct: 291 AQKVFDEMEERSVVSWTSLIVG-LAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349
Query: 94 NLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ G L+ G + + ++ + I ++D+ C+
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCR 386
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M ++ V+S+TA+VSG+ V+ A + F +M +RD W +I G +
Sbjct: 156 LGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQN 215
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F + + LF+ + + T+V L+A ++G L+LG WI Y+ KN + D F
Sbjct: 216 GAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVL 275
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLR--AS 163
NAL+DMY KC +W +MI A+ G D A+ +F QM+
Sbjct: 276 NALVDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGG 335
Query: 164 IKPDEVAYVGVLSARTH 180
++PDEV +VG+L+A TH
Sbjct: 336 VRPDEVTFVGLLNACTH 352
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+++ A+++GY+ V +AR+ FD MP RD V W+T+I GY++ AL +F+ +
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ +E IV+ L+A A LG LE G+++ + + + + G ALIDMY KC
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F W +MI GLA G G A+ +F + + P + +VGVL+A
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNA 375
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T V +L A + G ++ G + K +K +++++ ++D+
Sbjct: 365 TSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL------------- 411
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L+ +G +A+++ M I PD V + +LSA
Sbjct: 412 ---LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSA 443
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 15/179 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+DV+++ A+++GY+ V +AR+ FD MP RD V W+T+I GY++ AL +F+ +
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ +E IV+ L+A A LG LE G+++ + + + + G ALIDMY KC
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
F W +MI GLA G G A+ +F + + P + +VGVL+A
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNA 375
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
T V +L A + G ++ G + K +K +++++ ++D+
Sbjct: 365 TSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL------------- 411
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L+ +G +A+++ M I PD V + +LSA
Sbjct: 412 ---LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSA 443
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 36/206 (17%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+ +S+ AI+SGY+ + AR+ FD+MP R+ V +TTMIDGY +
Sbjct: 210 KLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMAS 269
Query: 66 ALTLFQEIQTS----------------NIMGDEFTIVSILTARANLGALELGEWIKTYID 109
A +F+E N+ DEF +VS+++A + +G+LEL +W+ Y+
Sbjct: 270 ARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVR 329
Query: 110 KNKVKNDIFAGN---ALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDK 151
K+ + D+ + ALIDM KC T F ++ +M+ GL+I G G +
Sbjct: 330 KSSI--DVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQ 387
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
A+ +FS+ML + PD+VA+ +L+A
Sbjct: 388 AVSLFSRMLNEGLTPDDVAFTVILTA 413
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + VLW T I GY ++LF ++ S+ + D+FT S++ A + + +
Sbjct: 80 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF---------------TWTTMIVGL 143
+ G + V D+F +LID+Y KC +WT MI G
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 144 AISGNGDKALDMFSQM 159
A + +A +F +M
Sbjct: 200 ASFSDLVEARKLFDEM 215
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 40/179 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV T+++ Y ++ AR+ FD+M ER+ V WT MI GY + EA LF E+
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
N + + +I++ G L + D+ +N +
Sbjct: 217 EKNAV----SWNAIISGYVKCGDLRSA---RKMFDEMPHRNVV----------------- 252
Query: 135 TWTTMIVGLAISGNGDKALDMFSQ------------MLRA----SIKPDEVAYVGVLSA 177
++TTMI G A SG+ A +F + + R ++KPDE V ++SA
Sbjct: 253 SFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSA 311
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+D A + F++MP+RD + + +M+ G +A++LF + + D+ ILT
Sbjct: 353 SMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 412
Query: 91 ARANLGALELG 101
A + G ++ G
Sbjct: 413 ACSRAGLVDEG 423
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M ++F +KD++ + ++ Y +++ AR+ FD+ PE+D V W T+I GY
Sbjct: 182 MAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQ 241
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFA 119
+ AL +F E++ + DE TIVS+L+ AN G L+ G I + + + I
Sbjct: 242 GMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVV 301
Query: 120 GNALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
GNAL+ MY KC T+K +TW ++I GLA G ++++ F +ML I
Sbjct: 302 GNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRI 361
Query: 165 KPDEVAYVGVLSARTH 180
P+E++++ VL A +H
Sbjct: 362 HPNEISFLCVLGACSH 377
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 29 REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVS 87
R ++ AR+ FD +P D + M+ GY +A +++ + + S + D FT
Sbjct: 46 RGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCY 105
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF------- 134
+L A A L G + + K D + NALI+M+ KC +V
Sbjct: 106 LLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 135 --TWTTMIVGLAISGNGDKALDMFSQ 158
W+ +I G A G+ A MF +
Sbjct: 166 VVAWSAVIAGHAARGDMAAARKMFDE 191
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
KD A+++ + + +A D+ E D V W+ +I G+ A +F E
Sbjct: 133 KDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDEC 192
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+I+ +L A A G +E + D+ K+ +
Sbjct: 193 THKDIV----CWNVMLGAYAKHGEMENA---RELFDRAPEKDVV---------------- 229
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W T+I G A G AL++F +M A PDE V +LS
Sbjct: 230 -SWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLS 271
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F MPERD + W ++I GY ++ + AL +F+++ ++I E T+VS L A A
Sbjct: 270 AARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDMWKNDIEPTELTVVSALGACAE 329
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTTM 139
+G LELG I Y+ ++ D + GNAL+DMY KC +K W TM
Sbjct: 330 VGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTM 389
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
IVGL++ G+ AL +F M +I+PD V ++GVL+A +H+
Sbjct: 390 IVGLSVHGHSHDALKLFDLM---NIEPDHVTFLGVLTACSHS 428
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y + +ARQ FD M +D W TMI G +AL LF + NI
Sbjct: 357 ALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLM---NIEP 413
Query: 81 DEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCK 129
D T + +LTA ++ G L G + K+ I+ K+ + +I+M C+
Sbjct: 414 DHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCR 463
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + V+++TA+++G++ ++++A + F++MP ++ V W MI GY+ +
Sbjct: 151 QLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAEN 210
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L LF+ + S + ++ S+L +NL AL+LG+ + I K+ V +I AG +L+
Sbjct: 211 GLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLS 270
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC TW MI G A G G+KAL +F +M +KPD +
Sbjct: 271 MYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWIT 330
Query: 171 YVGVLSARTH 180
+V VLSA H
Sbjct: 331 FVAVLSACNH 340
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 24/168 (14%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M KD S+ ++SG+ +D AR+ F MP R+ V W MI GY+ A
Sbjct: 91 FDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAK 150
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+ +++ +++T G +EL E Y ++ +KN +
Sbjct: 151 QLFEVAPVRSVVA----WTAMITGFMKFGKIELAE---KYFEEMPMKNLV---------- 193
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
TW MI G + + L +F +M+ + +P+ + VL
Sbjct: 194 -------TWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++ + T+++S Y ++ A + F MP++D V W MI GY + +AL LF +++
Sbjct: 261 NITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMR 320
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ D T V++L+A + G ++LG
Sbjct: 321 DEGMKPDWITFVAVLSACNHAGFVDLG 347
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL-RVNRFREALTLF 70
K+ +VIS +++ +I ++ A + F+ M + V W +M+ GY R + + A LF
Sbjct: 1 KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
I +I + L A++ + L + D+ VK+
Sbjct: 61 DRIPEPDIFSYNIMLACYLH-NADVESARL------FFDQMPVKDTA------------- 100
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMF 156
+W TMI G + +G D+A ++F
Sbjct: 101 ----SWNTMISGFSQNGMMDQARELF 122
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+ +V GY ++DIAR FD+MPERD + M+ GY++ EA
Sbjct: 275 LFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEA 334
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L F ++ + + D T++ L+A A LG + G + YI+ N G ALID
Sbjct: 335 LNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALID 394
Query: 126 MYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC W +I GLAI G G+ A ++F +M + +KPD++
Sbjct: 395 MYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDIT 454
Query: 171 YVGVLSARTH 180
++GVL+A H
Sbjct: 455 FIGVLNACNH 464
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+G ++F M +D +S+ +++ GY+ V AR+ FD MP +++ + W +MI GY
Sbjct: 173 LGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYA 232
Query: 59 RVNR-FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R R A LF+E+ +++ + S++ G +E ++ K D+
Sbjct: 233 RSEEGLRVAWELFEEMPKRDLI----SWNSMIDGCVKCGKMENAH----HLFNQMPKRDV 284
Query: 118 FAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML-R 161
+ ++D Y K + M+ G +G+ +AL+ F ML R
Sbjct: 285 VSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSR 344
Query: 162 ASIKPDEVAYVGVLSA 177
+ PD + LSA
Sbjct: 345 KELFPDNATLLITLSA 360
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 7 IFGTMK-NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+ G M+ DV ++ Y+ + IARQ FD+M +RD V + +MIDGY++ +
Sbjct: 147 LLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKS 206
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF + ++ ++S + + E G + + + K D+ + N++ID
Sbjct: 207 ARELFDVMPM-----EQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMID 261
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQM 159
KC +W M+ G A G D A +F +M
Sbjct: 262 GCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEM 310
Score = 42.7 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108
LW +I + REA +F + + + D+F+ +L A + LG ++ G I +
Sbjct: 89 LWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 109 DKNKVKNDIFAGNALIDMYCKC 130
+ ++ +D+F N L+ +Y +C
Sbjct: 149 GRMEIGSDVFLQNCLMCLYLRC 170
>gi|255547321|ref|XP_002514718.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546322|gb|EEF47824.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 399
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 18/182 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KDVIS+T ++ Y +D A FD +P +D V WT M+ G+ + + RE
Sbjct: 197 KVFNAMPEKDVISWTEMIVAYAKSGDMDSAHVLFDGLPVKDMVAWTAMVTGFSQNAKPRE 256
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN---DIFAGNA 122
A+ F+ +Q + I DE T+V +++A + LGA E +WI+ +K + + G+A
Sbjct: 257 AIQFFERMQDAGIGTDEVTLVGVISACSQLGAAEYADWIRDIAEKQYGYDWGYSVVLGSA 316
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC F++++MI+G A+ G D A+ +F +M++ P+
Sbjct: 317 LIDMYSKCGSVDCAYKVFKGLKDRNVFSYSSMIMGFAMHGRADAAIKLFHEMIKTGTAPN 376
Query: 168 EV 169
+V
Sbjct: 377 KV 378
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 47/190 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
R F+Q+ + L++ +I GY E++ ++ ++ ++ FT +I A
Sbjct: 93 PRSIFNQVKFPNPFLYSAVIRGYSIEGILSESVKVYSFMRMEHVGPVSFTFSAIFKACGA 152
Query: 95 LGALELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTT 138
+G L LG + I +D+F N LIDMY KC V +WT
Sbjct: 153 VGDLHLGRQMHAQSILIGGFCSDLFVSNTLIDMYIKCGVLECGRKVFNAMPEKDVISWTE 212
Query: 139 MIVGLAISGNGD-------------------------------KALDMFSQMLRASIKPD 167
MIV A SG+ D +A+ F +M A I D
Sbjct: 213 MIVAYAKSGDMDSAHVLFDGLPVKDMVAWTAMVTGFSQNAKPREAIQFFERMQDAGIGTD 272
Query: 168 EVAYVGVLSA 177
EV VGV+SA
Sbjct: 273 EVTLVGVISA 282
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 100/184 (54%), Gaps = 21/184 (11%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ S+ A ++G + + + ARQ FD MPE+D + W+T++ GY++ AL LF +
Sbjct: 343 IASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLG 402
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNALIDMYCKC--- 130
+ + + T+ S L+A AN G LE G WI YI + +++ AG LIDMY KC
Sbjct: 403 AGVKPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAG--LIDMYAKCGSV 460
Query: 131 ---TVKFT-----------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ F W MI LAI G+ +L++FSQ+ ++IKP+ + Y+GVL+
Sbjct: 461 ADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLN 520
Query: 177 ARTH 180
A H
Sbjct: 521 ACCH 524
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 47/224 (20%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF +F M +K+ +++ A+++GY+ +D+A + F+++PERD V W MIDGY+R
Sbjct: 195 VGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSWLVMIDGYIRA 254
Query: 61 NRFREALTLFQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
+ EAL + + + G+ +V A A A+ G+ + T I K+ +F
Sbjct: 255 DCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVILKDGFDTHLFV 314
Query: 120 GNALIDMYCKCTV----------------------------------------------K 133
LI Y C +
Sbjct: 315 QATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDT 374
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+T++ G SG+ D AL +F ML A +KP+ + LSA
Sbjct: 375 ISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSA 418
Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D ++ +++ +D A++ +MP+RD V +TT++ R +A+ +F+ +
Sbjct: 76 RDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVFRGM 135
Query: 74 QTSNIMGDEFTIVSILTARA-NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ +E T+ ++TA A + LG + + I A N + V
Sbjct: 136 LAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATNLVHAYAAAAQV 195
Query: 133 KF--------------TWTTMIVGLAISGNGDKALDMFSQM 159
F TW M+ G +G D A +MF ++
Sbjct: 196 GFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERI 236
Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
A L +M + TV FT T++ LA +G+ + A+ +F ML + P+EV GV++A
Sbjct: 97 AKRMLAEMPQRDTVSFT--TVLTALARAGHAEDAMAVFRGMLAQDVPPNEVTLAGVITA 153
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 105/184 (57%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ A++ Y +++A + FD+M ERD V W+T+I +L EAL LF++
Sbjct: 116 DSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEK 175
Query: 73 IQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC- 130
+Q + ++ DE T++S+++A ++LG LELG W++ +I + + + G ALIDM+ +C
Sbjct: 176 MQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCG 235
Query: 131 -----TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
V F TWT +I GL + G +AL MF M ++ ++PD V + GVL
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLV 295
Query: 177 ARTH 180
A +H
Sbjct: 296 ACSH 299
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ--EIQTSNIMGDEFTIVS 87
E + AR F ++P D + + T+I + +RF + +LF ++++ I D FT
Sbjct: 36 ESLSYARYVFSRIPSPDTIAYNTIIRSH---SRFFPSHSLFYFFSMRSNGIPLDNFTFPF 92
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK--------- 133
+L A + L ++ + + I K + +DIF NALI +Y C VK
Sbjct: 93 VLKACSRL---QINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERD 149
Query: 134 -FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSARTH 180
+W+T+I +G +ALD+F +M L + PDEV + V+SA +H
Sbjct: 150 SVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISH 198
Score = 42.4 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D + F++M R+ + WT +I+G R EAL +F ++ S +
Sbjct: 225 TALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQ 284
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T +L A ++ G ++ G I I K ++ + L+D Y C V
Sbjct: 285 PDYVTFSGVLVACSHGGLVKEGWDIFESIRK------VYRMDPLLDHY-GCMVD------ 331
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I+G A G ++A D +M +KP+ + + +L A
Sbjct: 332 ILGRA--GLLNEAYDFVERM---PMKPNSIIWRTLLGA 364
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ-TSNIMGDEFTIVSILT 90
+D A + F++MPERD V W++MI + + EAL LFQ +Q + DE ++S+++
Sbjct: 135 LDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVS 194
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A + LG LELG+WI+ +I +N ++ + G AL+DM+ +C T
Sbjct: 195 AISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLT 254
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
WT +I GLA+ G +AL MF +M +PD V + GVL A +H
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSH 299
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V + ++ + + FD+M ER+ + WT +I+G R EAL +F E++
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQ 284
Query: 80 GDEFTIVSILTARANLGALELG 101
D T +L A ++ G + G
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEG 306
Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD + D + T+I + + + + + + D FT +L A A
Sbjct: 41 ARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MTMAGVSPDHFTFPFVLKACAR 99
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKF--------------TWTTM 139
L+ G + + + K +D++ N LI Y C + F +W++M
Sbjct: 100 ---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSM 156
Query: 140 IVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
I A +G G +AL +F +M L ++KPDEV + V+SA
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSA 195
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++ AR FD M +D + WT MI Y + N A LF +++ + +
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVR 330
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
+E T+VS+L+ A GAL++G+W YIDK V+ D+ ALIDMY KC
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
TW M+ G + G G+KAL +F++M +KP+++ ++G L A +H
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSH 446
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 24/185 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S++ ++ YI F +R V WT MI GY+R N E
Sbjct: 166 LFDKMSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMIAGYIRCNDLEEG 216
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
LF + N+ ++ T++S++ + +GA++LG+ + YI +N + AL+DM
Sbjct: 217 ERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDM 276
Query: 127 YCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC ++K TWT MI A + D A +F QM ++P+E+
Sbjct: 277 YGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTM 336
Query: 172 VGVLS 176
V +LS
Sbjct: 337 VSLLS 341
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA++ Y + A++ F + +RD W M+ GY +AL LF E++
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426
Query: 75 TSNIMGDEFTIVSILTARANLGALELGE 102
T + ++ T + L A ++ G + G+
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGK 454
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
R AL + ++ +I D F I S+L A + + +G+ I + KN + +D+F NAL
Sbjct: 91 RYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNAL 150
Query: 124 IDMYCKC 130
+ MY +C
Sbjct: 151 MQMYSEC 157
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G F M ++V+S+ A++S Y + AR FD MP R+ W+ MI G +
Sbjct: 162 LGRARHFFDAMSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLS 221
Query: 61 NRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIF 118
R EAL LF + + +S I+ +E +VS+++A A + +LE G W+ Y ++ + +
Sbjct: 222 GRCWEALGLFGDMVHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVV 281
Query: 119 AGNALIDMYCKC-----TVK----------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
+A+IDMY KC ++ ++W MI GLA++G +AL + +M
Sbjct: 282 LASAIIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVG 341
Query: 164 IKPDEVAYVGVLSARTHN 181
++P+++ ++G+LSA TH+
Sbjct: 342 VQPNDITFIGLLSACTHS 359
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+ G M V+ +AI+ Y + A + F MP R+ W MI G R+
Sbjct: 273 ELQGAM---SVVLASAIIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQ 329
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
AL+L ++Q + ++ T + +L+A + G + G
Sbjct: 330 ALSLLWKMQMVGVQPNDITFIGLLSACTHSGLVNEGR 366
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M KDV S+T++VS Y ++ A + F ++P R+ V W+ M+ Y + N E
Sbjct: 289 EIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEE 348
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALI 124
A+ +F ++ + + + T+VS+L+A A LG L++G + YI +KV+ + NA I
Sbjct: 349 AMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFI 408
Query: 125 DMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DM+ KC +W TMIV A+ G ++AL +F + I PDE+
Sbjct: 409 DMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEI 468
Query: 170 AYVGVLSARTHN 181
Y+GVLSA +H+
Sbjct: 469 TYIGVLSACSHS 480
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 47/211 (22%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF-QE 72
+ V+ A+V Y + + AR+ FD+M +RD V WTT++DGY R EA +F +
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ +E T+V+ +A +G L LG + + ++ V+ + NAL+DM+ KC
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283
Query: 131 -----------TVK--FTWTTMIVGLAISGN----------------------------- 148
+K ++WT+M+ A G+
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQA 343
Query: 149 --GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++A+ +F+ M+ A ++P + V VLSA
Sbjct: 344 NLPEEAMRIFNDMIAAGVEPIDATLVSVLSA 374
Score = 44.7 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK-TY 107
+ TM+ G+LR + AL LF+ + + D TIV +A + E I
Sbjct: 99 MLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIV--FAVKAATTSSSPAEAIHCVA 156
Query: 108 IDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKA 152
+ + + GNAL+ MY +WTT++ G A G D+A
Sbjct: 157 FKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEA 216
Query: 153 LDMFSQMLRASIK-PDEVAYVGVLSA 177
+F +M+ A P+EV V SA
Sbjct: 217 WRVFCRMVVAGGGWPNEVTLVAAASA 242
Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V A + F M +++ V W TMI + + EAL LFQ+ + I DE T + +L+A
Sbjct: 417 VGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSA 476
Query: 92 RANLGALELGEW 103
++ G + G +
Sbjct: 477 CSHSGLVSEGRY 488
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 101/189 (53%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F DV+S+ +++ G I + A F +M ER+ + W MI GY + + +EA
Sbjct: 149 VFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEA 208
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+E+Q + + +VS+L+A + LGAL+ G W+ YI K V+ D ALIDM
Sbjct: 209 LALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDM 268
Query: 127 YCKCTV------KFT---------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC F+ +T I GLA++G ++AL +F QM I PD V+Y
Sbjct: 269 YAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSY 328
Query: 172 VGVLSARTH 180
+ VL A +H
Sbjct: 329 IAVLCACSH 337
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 49 LWTTMIDGYLRVNRFREALT---LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
L+ T I G+ R R L+ LF + ++ + FT + +N A +LG
Sbjct: 56 LFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFH 115
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGD 150
+ KN + D+F N++I Y C +W +MI G +GN
Sbjct: 116 GMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNIL 175
Query: 151 KALDMFSQM 159
+AL +FS+M
Sbjct: 176 EALSLFSKM 184
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D I A++ Y +D+A Q F +RD +T I G EAL LF++++
Sbjct: 258 DSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMK 317
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
I D + +++L A ++ G +E G + + D + ++ ++ ++D+
Sbjct: 318 GEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDL------- 370
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G ++A + M IKPD V + +L A
Sbjct: 371 ---------LGRAGLLEEAEKFVASM---PIKPDNVIWGALLGA 402
>gi|404357541|gb|AFR63763.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357549|gb|AFR63767.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357553|gb|AFR63769.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357557|gb|AFR63771.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++++ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVINAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHAYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ-TSNIMGDEFTIVSILT 90
+D A + F++MPERD V W++MI + + EAL LFQ +Q + DE ++S+++
Sbjct: 135 LDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVS 194
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A + LG LELG+WI+ +I +N ++ + G AL+DM+ +C T
Sbjct: 195 AISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLT 254
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
WT +I GLA+ G +AL MF +M +PD V + GVL A +H
Sbjct: 255 WTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSH 299
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V + ++ + + FD+M ER+ + WT +I+G R EAL +F E++
Sbjct: 225 TALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQ 284
Query: 80 GDEFTIVSILTARANLGALELG 101
D T +L A ++ G + G
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEG 306
Score = 43.9 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD + D + T+I + + + + + + D FT +L A A
Sbjct: 41 ARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSK-MAMAGVSPDHFTFPFVLKACAR 99
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKF--------------TWTTM 139
L+ G + + + K +D++ N LI Y C + F +W++M
Sbjct: 100 ---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSM 156
Query: 140 IVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
I A +G G +AL +F +M L ++KPDEV + V+SA
Sbjct: 157 IACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSA 195
>gi|255578286|ref|XP_002530010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530489|gb|EEF32372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 487
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 26/202 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG +F M +D++S+TA++ G +N E V+ + FDQMPER+ V WT MI GY+
Sbjct: 181 MGEAKGVFSEMGERDIVSWTALLEGVVNWEGVENGKVVFDQMPERNEVGWTIMISGYVGS 240
Query: 61 NRFREALTLFQEIQTSNIMG-----DEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115
+E L E+ ++G + T+ SIL+A A G + +G W+ Y K +
Sbjct: 241 GFCKEGFLLLSEM----VLGLRLELNYVTLCSILSACAQSGDVVMGRWVHVYALKKMGRE 296
Query: 116 -DIFAGNALIDMYCKC--------TVKF-------TWTTMIVGLAISGNGDKALDMFSQM 159
D+ G ALIDMY KC K+ W ++ GLA+ G G L +F +M
Sbjct: 297 IDMMVGTALIDMYAKCGRIKMAYEVFKYLPRRNVVAWNAILGGLAMHGKGRIVLVIFPKM 356
Query: 160 LRASIKPDEVAYVGVLSARTHN 181
++ + KPD++ ++ VLSA +H+
Sbjct: 357 IQET-KPDDLTFIAVLSACSHS 377
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 35 ARQCFDQMP--ERDYVLWTTMIDGYLR-VNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
A FDQ+P +D WT+++ + + R A +LF+E++ ++ D+ V + +
Sbjct: 80 AHHLFDQIPNSHKDTADWTSLLSCLAKHTSTPRNAFSLFEEMRKRGVILDDVAFVCVFSL 139
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
A +G LE+G + K ++ NA++++Y KC
Sbjct: 140 CARVGNLEMGRQAHGCVVKMGFGINVKVCNAVMNVYVKC 178
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++V+S T++V GY V AR F M E++ V W +I GY + EA
Sbjct: 310 VFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV------KNDIFAG 120
+ LF ++ +I +T ++L A ANL L+LG T I K+ ++DIF G
Sbjct: 370 VRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVG 429
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC + +W MIVG A +G G AL++F +ML + K
Sbjct: 430 NSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQK 489
Query: 166 PDEVAYVGVLSARTH 180
PD V +GVLSA +H
Sbjct: 490 PDHVTMIGVLSACSH 504
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ SY A++S ++D A F MPE D W M+ G+ + +RF E
Sbjct: 75 KVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEE 134
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F ++ + + + +E++ S L+A A L L +G I I K++ D++ G+AL+D
Sbjct: 135 ALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVD 194
Query: 126 MYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V +W ++I +G KAL++F M+ ++PDE+
Sbjct: 195 MYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEIT 254
Query: 171 YVGVLSA 177
V+SA
Sbjct: 255 LASVVSA 261
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 20/183 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y V A++ FD M R+ V W ++I Y + +AL +F +
Sbjct: 185 DVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMM 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALIDMYCKC--- 130
+ + DE T+ S+++A A+ A+ G I + ++K +ND+ GNAL+DMY KC
Sbjct: 245 DNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRV 304
Query: 131 -TVKFTW-----------TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ + T+M+ G A + + A MFS M+ ++ V++ +++
Sbjct: 305 NEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGY 360
Query: 179 THN 181
T N
Sbjct: 361 TQN 363
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ V+ F++M ERD V W MI GY + AL
Sbjct: 418 FQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNAL 477
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+F+++ S D T++ +L+A ++ G +E G + Y + + +
Sbjct: 478 EIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEG---RRYFHSMRTELGL---------- 524
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+K +T M+ L +G D+A D+ M ++PD V + +L+A
Sbjct: 525 --APMKDHFTCMVDLLGRAGCLDEANDLIQTM---PMQPDNVVWGSLLAA 569
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++VS Y +D A + D +PE + V WT +I GY+ V ++REA+ LF+ + + +
Sbjct: 153 TSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLR 212
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--------CT 131
D FTIV +L+A +G L GEWI YI +N + ++F +L+D+Y K C
Sbjct: 213 PDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCL 272
Query: 132 VK-------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W+ MI G A +G ALD+F +ML A +KPD A VG L A
Sbjct: 273 FDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCA 325
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
++V T++V Y ++ AR FD M ERD V W+ MI GY ++AL LF ++
Sbjct: 248 RNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKM 307
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV- 132
+ + D + +V L A A LGALELG+W +D+ + + G ALIDMY KC
Sbjct: 308 LNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCGSM 367
Query: 133 --------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+ W I GLA++G+ A +F QM R I+PD +VG+L
Sbjct: 368 AKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGLLCGC 427
Query: 179 TH 180
TH
Sbjct: 428 TH 429
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
++ I+ + R F+Q+ E D VL+ TMI G + + F E++ + ++
Sbjct: 51 WSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGF 110
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK 133
+ + FT ++ A A L +LG + T + K ++F +L+ +Y KC +K
Sbjct: 111 LPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALK 170
Query: 134 F----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT +I G G +A+D+F +ML ++PD V VLSA
Sbjct: 171 MLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSA 224
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++ I+ + E +A+ F++M RD V W TMI GY+R RF EAL LF+ +
Sbjct: 75 DLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMN 134
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
SN+ D++T S++ A LGAL+ +W+ + + +++ + +ALIDMY KC
Sbjct: 135 KSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQ 194
Query: 131 TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T K W MI GLA+ G A+ +F++M ++ PD + ++G+L+A +
Sbjct: 195 TAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACS 254
Query: 180 H 180
H
Sbjct: 255 H 255
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 26/162 (16%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A++ FD + + +W MI G +A+ +F +++ N++
Sbjct: 181 SALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVL 240
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYID----KNKVKNDIFAGNALIDMYCKCTVKFT 135
D T + ILTA ++ G ++ G + Y D + V+ I A++D+
Sbjct: 241 PDAITFLGILTACSHCGLVKEG---RKYFDLMRSRYSVQPHIEHYGAMVDL--------- 288
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L +G ++A M M ++PD V + +L A
Sbjct: 289 -------LGRAGLLEEAFAMIKSM---PMEPDVVIWRALLGA 320
>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
Length = 544
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 104/213 (48%), Gaps = 46/213 (21%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+ V+++T +V GY++ ++ AR+ FD+MP R+ +W++M+ GY + EA +F I
Sbjct: 184 RTVVTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRI 243
Query: 74 QTSNIMG-------------------------------DEFTIVSILTARANLGALELGE 102
T N++ DEFT+ S+L+A A LG+LE G+
Sbjct: 244 PTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGK 303
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCT----VKFT-----------WTTMIVGLAISG 147
+ +I++ ++ + F N LIDMY KC ++ W TMI LA G
Sbjct: 304 KVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHG 363
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
D+AL +F QM + P+ + + VL A TH
Sbjct: 364 RSDEALHLFFQMEHSGQTPNTITVLAVLGACTH 396
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 52/210 (24%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERD--------------------------- 46
+D++ T IVS Y + AR+ FD+MP+R+
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAAAGDMDGALALFGGM 148
Query: 47 ----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102
YV W T+I G+ + EA F+ T M T ++ + G +E
Sbjct: 149 RSWTYVTWATLIRGFAKKGDMAEARRWFE--TTPPGMRTVVTWTVLVHGYVSAGDMEAA- 205
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISG 147
+ D+ +N F ++++ Y K W +I G A G
Sbjct: 206 --REVFDRMPARN-AFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVNWNALIAGYAQIG 262
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+KAL+ F ML+ +KPDE +LSA
Sbjct: 263 CSEKALEAFDSMLQERVKPDEFTMASLLSA 292
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR FD M ++ W TMI R EAL LF +++ S + T++++L A +
Sbjct: 337 ARYIFDGMRWKNTECWNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTH 396
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
G ++ G I +D V+ + L+D+
Sbjct: 397 GGFVDEGLRIFNKLDAYGVEAGVEHYGCLVDL 428
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M +DV+++T +VSGY + A + F +MPE++ V WT +I GY R
Sbjct: 243 MGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARN 302
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL LF ++ ++ D+FT S L A A++ +L+ G+ I Y+ + + +
Sbjct: 303 GMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVV 362
Query: 121 NALIDMYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+ALIDMY KC W T+I LA G G++A+ M M+R+
Sbjct: 363 SALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGA 422
Query: 165 KPDEVAYVGVLSARTHN 181
KPD++ +V +L+A +H+
Sbjct: 423 KPDKITFVVILNACSHS 439
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ S+ ++SGY + AR+ FD+MPE+D V W TM+ + + + E
Sbjct: 116 KVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDE 175
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL + E + I + F+ +LT L + L + I +++ ++++D
Sbjct: 176 ALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLD 235
Query: 126 MYCKCTV----------------------------------------------KFTWTTM 139
Y KC + +WT +
Sbjct: 236 AYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTAL 295
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A +G G KAL++F++M+ ++PD+ + L A
Sbjct: 296 ISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333
Score = 38.9 bits (89), Expect = 0.87, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEI 73
+ I +A++ Y + I R+ FD M + D VLW T+I + EA+ + ++
Sbjct: 358 NTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDM 417
Query: 74 QTSNIMGDEFTIVSILTARANLGALELG 101
S D+ T V IL A ++ G ++ G
Sbjct: 418 VRSGAKPDKITFVVILNACSHSGLVQQG 445
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFA 119
N+ EA++ + + + D T+ S+L A+ AL G+ + ++ +K F
Sbjct: 38 NKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFL 97
Query: 120 GNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQM 159
N LI+MY KC + ++W M+ G A G A +F +M
Sbjct: 98 SNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKM 152
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 109/205 (53%), Gaps = 25/205 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERD----------YVLW 50
MG ++F +KNK+++S+ A++S Y D A F M + D + W
Sbjct: 319 MGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISW 378
Query: 51 TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110
+ +I G+ R ++L LF+++Q + +M + TI S+L+ A L AL LG + Y +
Sbjct: 379 SAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIR 438
Query: 111 NKVKNDIFAGNALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDM 155
N + ++I GN LI+MY KC + F +W ++I G + G G+ AL
Sbjct: 439 NMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRT 498
Query: 156 FSQMLRASIKPDEVAYVGVLSARTH 180
F++M+RA +KPD + +V +LSA +H
Sbjct: 499 FNEMIRARMKPDNITFVAILSACSH 523
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 27/198 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSGY-INREQVDIARQCFDQMP----ERDYVLWTTMIDGYLRV 60
++F M + ++S+ +VSGY +NR+ + +R F +M + + V WT+++ + R
Sbjct: 188 QLFDGMFVRSIVSWNTMVSGYALNRDSLGASR-VFKRMELEGLQPNSVTWTSLLSSHARC 246
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ E L LF+ ++T I + +L+ A++ ++ G+ I Y+ K ++ +F
Sbjct: 247 GLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVK 306
Query: 121 NALIDMYCK-----------CTVK----FTWTTMIVGLAISGNGDKALDMFSQMLRAS-- 163
NALI Y K +K +W +I A SG D+A F M ++
Sbjct: 307 NALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSD 366
Query: 164 ----IKPDEVAYVGVLSA 177
++P+ +++ V+S
Sbjct: 367 DHSLVRPNVISWSAVISG 384
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 35 ARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
AR+ FD +P +LW ++I + + AL L+ E++ + D FT+ ++ A
Sbjct: 82 ARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRA 141
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---------------CTVKFTW 136
++LG+ L + + + +N + N L+ MY K +W
Sbjct: 142 CSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSW 201
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TM+ G A++ + A +F +M ++P+ V + +LS+
Sbjct: 202 NTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHA 244
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD + RD + W ++I GY AL F E+ + + D T V+IL+A ++ G +
Sbjct: 468 FDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLV 527
Query: 99 ELG 101
G
Sbjct: 528 AAG 530
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + +TA++ Y ++ AR FDQM ++D V WTTMI R +E +LF+++
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
S + +E+T +L A A+L A ++G+ + Y+ + FA +AL+ +Y KC
Sbjct: 290 GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTE 349
Query: 131 TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T + +WT++IVG A +G D AL F +LR+ KPDE+ +VGVLSA T
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409
Query: 180 H 180
H
Sbjct: 410 H 410
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + KD+ S+ ++SGY N +++ AR+ FD+MP RD W +I GY+ + EA
Sbjct: 120 LFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEA 179
Query: 67 LTLF---QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
L LF QE ++SN + FT+ S L A A + +L G+ I Y+ ++ ++ D AL
Sbjct: 180 LDLFRMMQENESSNC--NMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTAL 237
Query: 124 IDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+D+Y KC +WTTMI G + +F ++ + ++P+E
Sbjct: 238 LDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297
Query: 169 VAYVGVLSA 177
+ GVL+A
Sbjct: 298 YTFAGVLNA 306
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 1 MGFTLEIFGTMKNKDVISY--TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
MG + + T D S+ +A+V Y + AR+ F+QMP D V WT++I GY
Sbjct: 315 MGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYA 374
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKN-- 115
+ + AL F+ + S DE T V +L+A + G +++G E+ + +K+ + +
Sbjct: 375 QNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTA 434
Query: 116 -------DIFAGNA-------LIDMYCKCTVKFTWTTMIVGLAISGN 148
D+ A + +ID KF W +++ G I GN
Sbjct: 435 DHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGN 481
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 17/185 (9%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D + T++++ Y NR D AR+ F +MP RD V W +I R R ++AL LF+E+
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211
Query: 74 Q--TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY--CK 129
+ S D+ T + +L A +LGAL+ GE + Y +++ + N+LI MY C
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCG 271
Query: 130 CTVK-------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
C K TW+ MI GLA +G GD A+ F +M+R+ + PDE + GVLS
Sbjct: 272 CVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331
Query: 177 ARTHN 181
A +H+
Sbjct: 332 ACSHS 336
Score = 40.8 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQEIQTSNIMGDEFTIVSILT 90
VD A + F P++ V W+ MI G L N F +A++ F+E+ S++ DE T +L+
Sbjct: 273 VDKAYRVFCGTPQKSVVTWSAMISG-LAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331
Query: 91 ARANLGALELG 101
A ++ G ++ G
Sbjct: 332 ACSHSGLVDEG 342
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 15/177 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y +D A+ FD MP + V W +I G+ R AL L ++Q N
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
FT S+L+A A++GALE G+W+ ++ K+ +K F GN L+DMY K
Sbjct: 288 PTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347
Query: 131 ---TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
VK +W TM+ G A G G + LD F QMLR I+P+E++++ VL+A +H+
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
IV+ Y +D AR+ FD+MP +D V WT +I G+ + NR R+AL LF ++ +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPN 188
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
FT+ S+L A + L+ G + + K ++ ++ G+AL+DMY +C
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248
Query: 131 ----TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +W +I G A G G+ AL + +M R + +P Y VLSA
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSA 299
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTY-IDKNKVKNDIFAGNALIDMYCKCT 131
IQ +++ D +L LG +E G + + +D + + N + N +++MY KC
Sbjct: 78 IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG 137
Query: 132 V---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
TWT +I G + + AL +F QMLR +P+ +L
Sbjct: 138 CLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLK 197
Query: 177 A 177
A
Sbjct: 198 A 198
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y +D A++ FD++ + D V W TM+ G + +E L F+++ I +E +
Sbjct: 335 YAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISF 394
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ +LTA ++ G L+ G + + K KV+ D+ +D+
Sbjct: 395 LCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDL 435
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y+ +++ AR FD+M ERD V WT MI GY + E+L LF++++ ++
Sbjct: 199 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 258
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+ +V+++ A A LGA+ I YI + K + D+ G A+IDMY KC
Sbjct: 259 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 318
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W+ MI G G KALD+F ML + + PD++ +L A +H
Sbjct: 319 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y +++ AR FD+M ERD V WT MI GY E+L LF +++ ++
Sbjct: 875 AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D+ +V+++ A A LGA+ I YI + K + D+ G A+IDM+ KC
Sbjct: 935 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+W+ MI G G KALD+F MLR+ I P+++ V +L A +H
Sbjct: 995 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ G ++N +I +V Y +D A FD M RD V W+ M+ G+ +V +
Sbjct: 763 VHGMLQN--LIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNC 820
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
F+E+ D +T+ ++ A +L L++G I + K + D F AL+DM
Sbjct: 821 FGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 880
Query: 127 YCKCT----VKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +F TWT MI G A GN +++L +F +M + PD+VA
Sbjct: 881 YGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 940
Query: 172 VGVLSA 177
V V+ A
Sbjct: 941 VTVVFA 946
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ G ++N ++ ++ Y +D A FD M RD V W+ M+ G+ +V +
Sbjct: 87 VHGMLEN--IVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINC 144
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
F+E+ D +T+ ++ A +L L++G I + K + D F AL+DM
Sbjct: 145 FGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 204
Query: 127 YCKCT----VKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +F TWT MI G A G +++L +F +M + PD+VA
Sbjct: 205 YVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAM 264
Query: 172 VGVLSA 177
V V+ A
Sbjct: 265 VTVVFA 270
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 21/169 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA++ Y V+ AR+ FD+M E++ + W+ MI Y + R+AL LF +
Sbjct: 295 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 354
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
+S ++ D+ T+ S+L A ++ G +E G + + + V+ D+ ++D+
Sbjct: 355 SSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDL------- 407
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+AL + M +I+ DE + L A RTH
Sbjct: 408 ---------LGRAGRLDEALKLIKSM---TIEKDEGLWGAFLGACRTHK 444
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 21/169 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA++ + V+ AR+ FD+M E++ + W+ MI Y + R+AL LF +
Sbjct: 971 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 1030
Query: 75 TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S I+ ++ T+VS+L A ++ G +E G + + V+ D+ ++D+
Sbjct: 1031 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDL------- 1083
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+AL + M + + DE + L A RTH
Sbjct: 1084 ---------LGRAGRLDEALKLIXSM---TXEKDEGLWGAFLGACRTHK 1120
>gi|255685336|gb|ACU28157.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685338|gb|ACU28158.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685340|gb|ACU28159.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685342|gb|ACU28160.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685344|gb|ACU28161.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685346|gb|ACU28162.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685348|gb|ACU28163.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685350|gb|ACU28164.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685352|gb|ACU28165.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685354|gb|ACU28166.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685356|gb|ACU28167.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685358|gb|ACU28168.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685360|gb|ACU28169.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685362|gb|ACU28170.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685364|gb|ACU28171.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685366|gb|ACU28172.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685368|gb|ACU28173.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685370|gb|ACU28174.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685372|gb|ACU28175.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685374|gb|ACU28176.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685376|gb|ACU28177.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685378|gb|ACU28178.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685380|gb|ACU28179.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685382|gb|ACU28180.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685384|gb|ACU28181.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685386|gb|ACU28182.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685388|gb|ACU28183.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685390|gb|ACU28184.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685392|gb|ACU28185.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685394|gb|ACU28186.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685396|gb|ACU28187.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685398|gb|ACU28188.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685400|gb|ACU28189.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685402|gb|ACU28190.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685404|gb|ACU28191.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685406|gb|ACU28192.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685408|gb|ACU28193.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685410|gb|ACU28194.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685412|gb|ACU28195.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685414|gb|ACU28196.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685416|gb|ACU28197.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685418|gb|ACU28198.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685420|gb|ACU28199.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685422|gb|ACU28200.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685424|gb|ACU28201.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685426|gb|ACU28202.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685428|gb|ACU28203.1| At3g62980-like protein [Arabidopsis thaliana]
Length = 176
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ +++EA
Sbjct: 14 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 73
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK V+ DI G
Sbjct: 74 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 133
Query: 122 ALIDMYCKC 130
ALIDMY KC
Sbjct: 134 ALIDMYAKC 142
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M +++ S+ +V+GY +D A+ FD+MP+RD + W MI GY + + E
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF +++ + + + L++ A + ALELG+ + + K + AGNAL+
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA 448
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K +W TMI G A G G +AL +F M + +IKPD+V
Sbjct: 449 MYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVT 507
Query: 171 YVGVLSARTH 180
VGVLSA +H
Sbjct: 508 LVGVLSACSH 517
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 15/164 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + +++S+ ++ GY+ ++++D AR FD+MP RD + W MI GY + EA
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVK-NDIFAGNALI 124
LF+E+ ++ F ++++ G L+ I + +KN+V N + AG
Sbjct: 266 RRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321
Query: 125 DMYCKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQM 159
K F +W TM+ G A GN D+A +F +M
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F M+ + ++Y A++SGY++ + D AR+ F++MP+RD + W M+ GY++
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNL 138
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
A LF ++ +++ + ++L+ A G +E I D+ VKN+I + N L
Sbjct: 139 SAARALFNQMPEKDVV----SWNAMLSGFAQNGFVEEARKI---FDQMLVKNEI-SWNGL 190
Query: 124 IDMYCK 129
+ Y +
Sbjct: 191 LSAYVQ 196
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+ A++SG+ V+ AR+ FDQM ++ + W ++ Y++ R +A
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA 203
Query: 67 LTLFQ-----EIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI--- 117
LF EI + N +MG + AR+ + + ++K+ +I
Sbjct: 204 RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV---------RDKISWNIMIT 254
Query: 118 -FAGNALID----MYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQM 159
+A N L+ ++ + ++ F WT M+ G +G D+A +F +M
Sbjct: 255 GYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM 303
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GF E IF M K+ IS+ ++S Y+ +++ AR+ FD + + V W ++ GY+
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R R +A +LF + D+ + ++T A G L + ++ ++ D+F
Sbjct: 227 RKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEA---RRLFEELPIR-DVF 278
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
A A++ + + + + +W MI G S +KA ++F QM
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 30/173 (17%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ + D++ + +S Y+ + Q + A F+ M R V + MI GYL N+F A +
Sbjct: 54 TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV 113
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYC 128
F+++ +++ W + VKN ++ A AL +
Sbjct: 114 FEKMPDRDLIS----------------------W--NVMLSGYVKNGNLSAARALFNQMP 149
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ V +W M+ G A +G ++A +F QML +K +E+++ G+LSA N
Sbjct: 150 EKDV-VSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQN 197
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M +++ S+ +V+GY +D A+ FD+MP+RD + W MI GY + + E
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF +++ + + + L++ A + ALELG+ + + K + AGNAL+
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLA 448
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K +W TMI G A G G +AL +F M + +IKPD+V
Sbjct: 449 MYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVT 507
Query: 171 YVGVLSARTH 180
VGVLSA +H
Sbjct: 508 LVGVLSACSH 517
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 15/164 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + + +++S+ ++ GY+ ++++D AR FD+MP RD + W MI GY + EA
Sbjct: 206 LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEA 265
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVK-NDIFAGNALI 124
LF+E+ ++ F ++++ G L+ I + +KN+V N + AG
Sbjct: 266 RRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQS 321
Query: 125 DMYCKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQM 159
K F +W TM+ G A GN D+A +F +M
Sbjct: 322 QQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEM 365
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F M+ + ++Y A++SGY++ + D AR+ F++MP+RD + W M+ GY++
Sbjct: 79 ALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNL 138
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
A LF ++ +++ + ++L+ A G +E I D+ VKN+I + N L
Sbjct: 139 SAARALFNQMPEKDVV----SWNAMLSGFAQNGFVEEARKI---FDQMLVKNEI-SWNGL 190
Query: 124 IDMYCK 129
+ Y +
Sbjct: 191 LSAYVQ 196
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M KDV+S+ A++SG+ V+ AR+ FDQM ++ + W ++ Y++ R +A
Sbjct: 144 LFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDA 203
Query: 67 LTLFQ-----EIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI--- 117
LF EI + N +MG + AR+ + + ++K+ +I
Sbjct: 204 RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPV---------RDKISWNIMIT 254
Query: 118 -FAGNALID----MYCKCTVK--FTWTTMIVGLAISGNGDKALDMFSQM 159
+A N L+ ++ + ++ F WT M+ G +G D+A +F +M
Sbjct: 255 GYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM 303
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYL 58
GF E IF M K+ IS+ ++S Y+ +++ AR+ FD + + V W ++ GY+
Sbjct: 167 GFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
R R +A +LF + D+ + ++T A G L + ++ ++ D+F
Sbjct: 227 RKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEA---RRLFEELPIR-DVF 278
Query: 119 AGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQM 159
A A++ + + + + +W MI G S +KA ++F QM
Sbjct: 279 AWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 30/173 (17%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL 69
T+ + D++ + +S Y+ + Q + A F+ M R V + MI GYL N+F A +
Sbjct: 54 TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKV 113
Query: 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYC 128
F+++ +++ W + VKN ++ A AL +
Sbjct: 114 FEKMPDRDLIS----------------------W--NVMLSGYVKNGNLSAARALFNQMP 149
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ V +W M+ G A +G ++A +F QML +K +E+++ G+LSA N
Sbjct: 150 EKDV-VSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQN 197
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 108/187 (57%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F + K+V+ Y ++ G + +V+ +++ F +M ERD + WT+MI G+ + R+
Sbjct: 199 KVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ +F+E++ N+ D++T S+LTA + AL+ G+ + YI + K++IF +AL+D
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVD 318
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MYCKC T K +WT M+VG +G ++A+ FS M + I+PD+
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378
Query: 171 YVGVLSA 177
V+S+
Sbjct: 379 LGSVISS 385
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y + + A F +M ++ V WT M+ GY + EA+ F ++Q I
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
D+FT+ S++++ ANL +LE G + + + I NAL+ +Y KC
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433
Query: 131 --TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ F TWT ++ G A G ++ + +F ML +KPD+V ++GVLSA
Sbjct: 434 FNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSA 486
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
+ ++F M + ++ S+ I+S Y +V FD MP RD V W ++I GY
Sbjct: 62 YACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCG- 120
Query: 63 FREALTLFQEIQTSNIM--------GDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114
++Q ++ N+M + T ++L + G ++LG I ++ K
Sbjct: 121 -----LIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFM 175
Query: 115 NDIFAGNALIDMYCK-----CTVK------------------------------------ 133
+ +F G+ L+DMY K C K
Sbjct: 176 SYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEM 235
Query: 134 -----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WT+MI G +G A+D+F +M +++ D+ + VL+A
Sbjct: 236 RERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTA 284
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y ++ + + F+++ +D V WT ++ GY + + E + LF+ + +
Sbjct: 416 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 475
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D+ T + +L+A + G +E G N IF ++I+ + ++ +T MI
Sbjct: 476 DKVTFIGVLSACSRAGLVEKG-------------NQIF--ESMINEHGIVPIQDHYTCMI 520
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +G ++A + ++M PD +++ +LS+
Sbjct: 521 DLFSRAGRIEEARNFINKM---PFSPDAISWATLLSS 554
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G L F M K+ +++ +++G + +++ AR FD MPE++ V WT +IDGY+R+
Sbjct: 8 LGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGIIDGYVRM 67
Query: 61 NRFREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIF 118
NR E L LF+ + I E TI++IL A + +G L+ I ++K +DI
Sbjct: 68 NRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRGFNSSDIR 127
Query: 119 AGNALIDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLR 161
N++ID Y KC +F +WT++I G A+ G G +A+ F M R
Sbjct: 128 VTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVKRFENMER 187
Query: 162 ASIKPDEVAYVGVLSARTH 180
+KP+ V ++ VL+A +H
Sbjct: 188 TGLKPNRVTFLSVLNACSH 206
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLF 70
+ D+ +I+ Y + A + F+++ ++ V WT++I G+ +EA+ F
Sbjct: 123 SSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVKRF 182
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ ++ + + + T +S+L A ++ G + G E+ + +++ + DI L+DM
Sbjct: 183 ENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDM 239
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 18/192 (9%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
E G KN +++ A++S Y + +AR F++MPER+ V W +MI GY +
Sbjct: 322 FEQLGVYKNS--VTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESL 379
Query: 65 EALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+A+ LF+E I + + DE T+VS+ +A +LG L LG W + + +N +K I N+L
Sbjct: 380 KAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSL 439
Query: 124 IDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
I MY +C + F ++ T+I GLA G+G +++ + S+M I PD
Sbjct: 440 IFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDR 499
Query: 169 VAYVGVLSARTH 180
+ Y+GVL+A +H
Sbjct: 500 ITYIGVLTACSH 511
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 48/215 (22%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
K+VI++T +V+G+ ++ AR FD+MPER W M+ GY + +E + LF ++
Sbjct: 196 KNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDM 255
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+S DE T V++L++ ++LG L E I +D+ +++ F AL+DM+ KC
Sbjct: 256 LSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNL 315
Query: 131 ---------------TVKF-----------------------------TWTTMIVGLAIS 146
+V + +W +MI G A +
Sbjct: 316 EVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQN 375
Query: 147 GNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
G KA+ +F +M+ + KPDEV V V SA H
Sbjct: 376 GESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGH 410
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
AI+ Y +++AR+ FD+MP+R W +I GY + +EA LF + S
Sbjct: 139 AIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESE--K 196
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
+ T +++T A + LE + Y D+ + +W M+
Sbjct: 197 NVITWTTMVTGHAKMRNLETA---RMYFDEMPERRVA-----------------SWNAML 236
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G A SG + + +F ML + +PDE +V VLS+
Sbjct: 237 SGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSS 273
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
Y +++ Y+ ++ AR F +M +D V + T+I G E++ L +++ I
Sbjct: 436 YNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGI 495
Query: 79 MGDEFTIVSILTARANLGALELG 101
D T + +LTA ++ G LE G
Sbjct: 496 GPDRITYIGVLTACSHAGLLEEG 518
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 109/190 (57%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F ++ +K+ IS+TA++SGY + A Q F +MP ++ + WT +I G ++ + ++
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDS 221
Query: 67 LTLFQEIQTSNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
LF E+++ I + D F + SI+ A ANL L LG+ I + ++ +F NAL+D
Sbjct: 222 FYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVD 281
Query: 126 MYCKCTVKF---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC+ +WT++IVG A G ++AL ++++ML +KP+EV
Sbjct: 282 MYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVT 341
Query: 171 YVGVLSARTH 180
+VG++ A +H
Sbjct: 342 FVGLIYACSH 351
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARA 93
A F+Q+P RD + W +++ + N L++F + + + D + ++ A A
Sbjct: 57 ALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACA 116
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTT 138
LGA++ G+ + + V +D ++L+DMY KC + +WT
Sbjct: 117 ILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTA 176
Query: 139 MIVGLAISGNGDKALDMFSQM 159
MI G A SG A+ +F +M
Sbjct: 177 MISGYAQSGRKLDAIQLFQKM 197
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y V A++ F +M +RD V WT++I G + EAL+L+ + ++ +
Sbjct: 278 ALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKP 337
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
+E T V ++ A +++G + G + + K+ + N + Y T ++
Sbjct: 338 NEVTFVGLIYACSHVGLVSKGRYFFNSMIKD------YGINPSLQHY---------TCLL 382
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
L+ SG+ ++A ++ M KPDE + +LSA H+
Sbjct: 383 DLLSRSGHLEEAENLIKAM---PFKPDEATWAALLSACNHH 420
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W MIDGY ++ +
Sbjct: 214 KLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQ 273
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S++ DE T+V +L+A A
Sbjct: 274 AKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIA 333
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + G ALIDMY KC +++ W
Sbjct: 334 QLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNA 393
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLA+ G G+ A DM Q+ R SIKPD + +VGVL+A +H+
Sbjct: 394 MIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 436
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 38/181 (20%)
Query: 6 EIFGTM--KNKDVISYTAIVSGYINR-EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
E+F M + +++I++ +++ GY R + V++A + FD+MPE+D + W +MI GY++ R
Sbjct: 180 ELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGR 239
Query: 63 FREALTLF-----QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
+A LF +++ T IM D + G L L KT D+ + D+
Sbjct: 240 IEDAKGLFDVMPRRDVVTWAIMIDGY------------GKLGLVHQAKTLFDQMPHR-DV 286
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 176
A N +M+ G + +AL++F+ M + S + PDE V VLS
Sbjct: 287 VAYN----------------SMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLS 330
Query: 177 A 177
A
Sbjct: 331 A 331
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 28/184 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF---- 70
D+ ++ Y+ + ARQ FD+MP+RD V + +MIDGY++ A LF
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMP 186
Query: 71 ---QEIQTSNIM-------GDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKNDI 117
+ + T N M D + S L + +L W I Y+ ++++
Sbjct: 187 REKRNLITWNSMIGGYAQRADGVNVASKLFDE--MPEKDLISWNSMIGGYVKHGRIED-- 242
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L D+ + V TW MI G G +A +F QM D VAY ++S
Sbjct: 243 --AKGLFDVMPRRDV-VTWAIMIDGYGKLGLVHQAKTLFDQMPHR----DVVAYNSMMSG 295
Query: 178 RTHN 181
N
Sbjct: 296 FVQN 299
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
+D LW +I + R+AL LF + + ++ D+F++ +L A + LG + G +
Sbjct: 56 KDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQV 115
Query: 105 KTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNG 149
++ K++ +D+F N LI +Y KC ++ +MI G G
Sbjct: 116 HGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLV 175
Query: 150 DKALDMFSQMLR 161
+ A ++F M R
Sbjct: 176 ESAGELFDLMPR 187
>gi|218193370|gb|EEC75797.1| hypothetical protein OsI_12731 [Oryza sativa Indica Group]
Length = 523
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ + + +VD AR FD MP R W+ M+ Y R +R +A+ LF +Q
Sbjct: 199 DAVACNSAIVALARAGRVDEARAVFDGMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQ 258
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + +VS+L A+LGALE G W+ YIDK+ V + AL+DMYCKC
Sbjct: 259 AEGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIR 318
Query: 131 -------------TVKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
K +W +M++G A+ G +A +FS++ ++PD V ++ +L
Sbjct: 319 KAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPHGLRPDNVTFIAILM 378
Query: 177 ARTHN 181
A H+
Sbjct: 379 AYGHS 383
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y + AR+ FD R W +M+ G+ ++REA LF E++
Sbjct: 305 TALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPH 364
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T ++IL A + G
Sbjct: 365 GLRPDNVTFIAILMAYGHSG 384
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 109/190 (57%), Gaps = 20/190 (10%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+S+T ++ GY + AR FD+ PE+D V W+ +I GY R + E
Sbjct: 223 KVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNE 282
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNA 122
A+ +F E+ + N+ DEF +VS+++A + LG +L +W+ +Y+ + + + + A A
Sbjct: 283 AVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLA--A 340
Query: 123 LIDMYCKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDM+ KC VK ++I GL+I G G +A+++F++ML + PD
Sbjct: 341 LIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPD 400
Query: 168 EVAYVGVLSA 177
VA+ +L+A
Sbjct: 401 TVAFTVILTA 410
Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 22 IVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIM 79
I+S +++ V + F+++ L+ ++ + + ++F + +LF + Q+ +
Sbjct: 43 IISHFLSISTSVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYAL 102
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF----- 134
D++T ++ +N L+ GE + + V +D++ G++LI Y KC
Sbjct: 103 SDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKV 162
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQM 159
+WT M+ G A G+ + A +F +M
Sbjct: 163 FDEIPERNVVSWTAMVAGYASVGDLENAKRVFERM 197
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 16/164 (9%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
+I+RQ F+++P + V W T+I Y+ RF+EAL +F + +I DE T+V IL A
Sbjct: 184 EISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAAC 243
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWT 137
+ LG L++G WI + I + + N++IDMY KC TW
Sbjct: 244 SALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMSQRNTVTWN 303
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSARTH 180
TMI+GLA G+ ++AL +FS+ML + +PD V ++GVL A +H
Sbjct: 304 TMILGLATHGHTNEALVLFSKMLEQKLMEPDSVTFLGVLCACSH 347
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+ + D LW TMI G+ + N + A ++ +Q +M D FT ++ LG++
Sbjct: 89 FENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSV 148
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMY---------------CKCTVKFTWTTMIVGL 143
LG+ + + K ++ +F N LI MY W T+I
Sbjct: 149 LLGKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEIPSPELVAWNTVIGCY 208
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +ALDMFS+ML+ I+PDE V +L+A
Sbjct: 209 VDCGRFKEALDMFSRMLKLHIEPDEATLVVILAA 242
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM- 79
+I+ Y ++ A + F++M +R+ V W TMI G EAL LF ++ +M
Sbjct: 273 SIIDMYAKCGALEEAYEAFNKMSQRNTVTWNTMILGLATHGHTNEALVLFSKMLEQKLME 332
Query: 80 GDEFTIVSILTARANLGALELGEW 103
D T + +L A ++ G + ++
Sbjct: 333 PDSVTFLGVLCACSHGGMTSINQF 356
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV+S+ ++ GY N ++ + FD+M ER+ W +I GY + R E
Sbjct: 109 LFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEV 168
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTY---IDKNKVKNDIFAGNA 122
L F+ + ++ ++ T+ +L+A A LGA + G+ + Y + NKV D+ NA
Sbjct: 169 LGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKV--DVNVKNA 226
Query: 123 LIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
LIDMY KC +W TMI GLA G+G +ALD+F +M I PD
Sbjct: 227 LIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPD 286
Query: 168 EVAYVGVLSARTH 180
+V +VGVL A H
Sbjct: 287 KVTFVGVLCACKH 299
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 25/173 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M K+V+ +T++++GY+ + + AR+ FD PERD VLW TM+ GY+ + E
Sbjct: 46 KVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMME 105
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A +LF ++ ++M + ++L AN+G +E E +V +++ N
Sbjct: 106 ARSLFDQMPCRDVM----SWNTVLEGYANIGDMEACE---------RVFDEMLERNV--- 149
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 177
F+W +I G A +G + L F +M+ S+ P++ VLSA
Sbjct: 150 --------FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSA 194
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV A++ Y ++IA + F + RD + W TMI+G EAL LF E++
Sbjct: 220 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMK 279
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
I D+ T V +L A ++G +E G
Sbjct: 280 NCGISPDKVTFVGVLCACKHMGLVEDG 306
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 16/165 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
++ A F++MP+ V W T+ID + R++EA+ LF + S + D+ T V L+A
Sbjct: 202 IEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSA 261
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTW 136
A LG L++G + + ID + N + N+LIDMY KC V +W
Sbjct: 262 CAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSW 321
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSARTH 180
TMI+GLA+ G+GD+AL++FS+ML + P+EV ++GVL A +H
Sbjct: 322 NTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSH 366
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F ++ D LW TMI G R + +A ++ +Q + D FT ++
Sbjct: 101 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 160
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY---------------CKCTVKFTW 136
LG+ LG+ I + K+ ++ +F N L+ MY + W
Sbjct: 161 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAW 220
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T+I G +A+++F +ML++ +KPD+ +V LSA
Sbjct: 221 NTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSA 261
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-GDEFTIVSILT 90
V+ A + F++M R+ V W TMI G EAL LF ++ + +E T + +L
Sbjct: 303 VEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLC 362
Query: 91 ARANLGALELGEWIKTYID 109
A ++ G +E G + Y D
Sbjct: 363 ACSHGGMVEEG---RRYFD 378
>gi|404357981|gb|AFR63983.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGSINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|222625417|gb|EEE59549.1| hypothetical protein OsJ_11827 [Oryza sativa Japonica Group]
Length = 379
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ + + +VD AR FD MP R W+ M+ Y R +R +A+ LF +Q
Sbjct: 123 DAVACNSAIVALARAGRVDEARAVFDGMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQ 182
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + +VS+L A+LGALE G W+ YIDK+ V + AL+DMYCKC
Sbjct: 183 AEGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIR 242
Query: 131 -------------TVKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
K +W +M++G A+ G +A +FS++ ++PD V ++ +L
Sbjct: 243 KAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPHGLRPDNVTFIAILM 302
Query: 177 ARTHN 181
A H+
Sbjct: 303 AYGHS 307
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y + AR+ FD R W +M+ G+ ++REA LF E++
Sbjct: 229 TALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPH 288
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T ++IL A + G
Sbjct: 289 GLRPDNVTFIAILMAYGHSG 308
>gi|108709982|gb|ABF97777.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 523
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ + + +VD AR FD MP R W+ M+ Y R +R +A+ LF +Q
Sbjct: 199 DAVACNSAIVALARAGRVDEARAVFDGMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQ 258
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + +VS+L A+LGALE G W+ YIDK+ V + AL+DMYCKC
Sbjct: 259 AEGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIR 318
Query: 131 -------------TVKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
K +W +M++G A+ G +A +FS++ ++PD V ++ +L
Sbjct: 319 KAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPHGLRPDNVTFIAILM 378
Query: 177 ARTHN 181
A H+
Sbjct: 379 AYGHS 383
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y + AR+ FD R W +M+ G+ ++REA LF E++
Sbjct: 305 TALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPH 364
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T ++IL A + G
Sbjct: 365 GLRPDNVTFIAILMAYGHSG 384
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
M E+F M ++ +S++ +V GY +++AR FD+MP ++ V WT +I GY
Sbjct: 232 MSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EA L ++ S + D ++SIL A G L LG I + + ++ + ++ +
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY 351
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NAL+DMY KC +K +W TM+ GL + G+G +A+++FS+M R
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 164 IKPDEVAYVGVLSARTH 180
I+PD+V ++ VL + H
Sbjct: 412 IRPDKVTFIAVLCSCNH 428
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+++F M +D +S+ +++ G + ++ AR+ FD+MP+RD + W TM+DGY R
Sbjct: 174 MKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMS 233
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+A LF+++ N + + +++ + G +E+ + DK + A N +
Sbjct: 234 KAFELFEKMPERNTV----SWSTMVMGYSKAGDMEMA---RVMFDKMPLP----AKNVV- 281
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TWT +I G A G +A + QM+ + +K D A + +L+A T +
Sbjct: 282 ----------TWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
Q ++A + F+Q+ E + L ++I + + ++ +A +F E+Q + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TVKF--------- 134
A + L + + + +I+K + +DI+ NALID Y +C +K
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 135 -TWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
Score = 39.7 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A F+ +P++D V W TM+ G +EA+ LF ++ I
Sbjct: 355 ALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRP 414
Query: 81 DEFTIVSILTARANLGALELG 101
D+ T +++L + + G ++ G
Sbjct: 415 DKVTFIAVLCSCNHAGLIDEG 435
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+F M ++ +++++ GY + V A FD +P R+ +W +MI GY++ +
Sbjct: 197 EVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEK 256
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F+ + DEFT+VS+L+A A LG L++G+ I I+ + + F + L+D
Sbjct: 257 ALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVD 316
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K F W MI G AI+G + L+ F +M ++I+PD +
Sbjct: 317 MYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGIT 376
Query: 171 YVGVLSARTH 180
++ VLSA H
Sbjct: 377 FLTVLSACAH 386
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 15/183 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F TM ++V+++ A++SGY+ + A F++M + V W+ MI G+ R A
Sbjct: 103 LFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIATA 162
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV------------K 114
LF E+ + + T ++ A +G +E + + + K
Sbjct: 163 RRLFDEVPHE--LKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKK 220
Query: 115 NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174
++ A+ D ++ W +MI G +G G+KAL F M +PDE V V
Sbjct: 221 GNVTEAAAVFDWVPVRNLEI-WNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSV 279
Query: 175 LSA 177
LSA
Sbjct: 280 LSA 282
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 6 EIFGTMKNKDVISYTAIVSG----YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
+I +++K ++ ++SG Y + AR F+ E++ W MI G+
Sbjct: 294 QIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAING 353
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
+ E L F ++ SNI D T +++L+A A+ G + + + ++ +++ I
Sbjct: 354 KCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEGYRIEIGIKHYG 413
Query: 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
++D+ G + D + ++R +KP++ +L A R H
Sbjct: 414 CMVDLL-------------------GRAGRLKDAYDLIVRMPMKPNDTVLGAMLGACRIH 454
Query: 181 N 181
+
Sbjct: 455 S 455
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S TA+++ Y + V+ AR FD M ERD V W MIDGY + +
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LFQ+ + DE T+V+ L+A + +GALE G WI ++ ++++ ++ LI
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301
Query: 125 DMYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDE 168
DMY KC T + W MI G A+ G AL +F++M ++P +
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 169 VAYVGVLSARTH 180
+ ++G L A H
Sbjct: 362 ITFIGTLQACAH 373
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D + +++++ Y +D AR FD++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ S +E+T +L A A+L ELG+ + Y+ + FA ++L+DMY KC
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 131 --TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ K +WT++I G A +G D+AL F +L++ KPD V +V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 178 RTH 180
TH
Sbjct: 430 CTH 432
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+D+ S+ +V+GY ++ AR+ FD+M E+D WT M+ GY++ ++ E
Sbjct: 141 KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEE 200
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL L+ +Q N + FT+ + A A + + G+ I +I + + +D ++L+
Sbjct: 201 ALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLM 260
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +WT+MI S + +FS+++ + +P+E
Sbjct: 261 DMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEY 320
Query: 170 AYVGVLSA 177
+ GVL+A
Sbjct: 321 TFAGVLNA 328
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++V Y ++ A+ D P+ D V WT++I G + + EAL F + S
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
D T V++L+A + G +E G E+ + +K+++ + L+D+ +
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 131 --------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYV 172
KF W +++ G + GN D A + ++ + I+P+ V YV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 526
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 108/191 (56%), Gaps = 18/191 (9%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M K+V+S+ ++ Y + AR+ FD+MP R+ W +MI G L+ + EAL
Sbjct: 162 FDAMPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEAL 221
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALID 125
+F ++ S ++ +E +VS ++A L +E G W+ Y ++ N + + A A++D
Sbjct: 222 RVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLA-TAIVD 280
Query: 126 MYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V+ ++W +MI GLA++G+ +AL +F +M A ++P+++
Sbjct: 281 MYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDIT 340
Query: 171 YVGVLSARTHN 181
++G+LSA +H+
Sbjct: 341 FIGLLSACSHS 351
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
E+ G M + TAIV Y + A + F MP R+ W +MI G R+
Sbjct: 265 ELNGAMS---AVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQ 321
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104
AL+LF ++Q + + ++ T + +L+A ++ G ++ G W+
Sbjct: 322 ALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWL 360
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +D +S+T++++GY +++D A + F MPE+D + WT +I G+ + A
Sbjct: 229 LFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAA 288
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND---IFAGNAL 123
L LFQ++ + F +VS L A A LG + G + +I + ++ D IF NAL
Sbjct: 289 LDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNAL 348
Query: 124 IDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC T W +M+ G + +G G ++L MF +ML A ++P
Sbjct: 349 IDMYSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTY 408
Query: 169 VAYVGVLSARTH 180
V ++ VL+A +H
Sbjct: 409 VTFLAVLTACSH 420
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 73/196 (37%), Gaps = 53/196 (27%)
Query: 35 ARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-----DEFTIVS 87
A D MP R+ V + T+I R R EAL +F + +G D F +VS
Sbjct: 118 ALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVALDRFAVVS 177
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------- 130
+ +A A +GAL + + + V+ + NA++D Y K
Sbjct: 178 VASACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLFNQMSIQD 237
Query: 131 TVKFT-----------------------------WTTMIVGLAISGNGDKALDMFSQMLR 161
TV +T WT +I G +G D ALD+F QML
Sbjct: 238 TVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLV 297
Query: 162 ASIKPDEVAYVGVLSA 177
+ P A V L A
Sbjct: 298 EGMAPTPFALVSSLGA 313
Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 47/90 (52%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++ + A++ Y + A F +M ERD++ W +M+ G+ + +++L +F+ +
Sbjct: 341 NIFIHNALIDMYSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRML 400
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI 104
+ + T +++LTA ++ G + G I
Sbjct: 401 DAEVQPTYVTFLAVLTACSHAGLVTDGRRI 430
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 100/181 (55%), Gaps = 18/181 (9%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+IS TA Y V +A+ FDQM + ++W MI GY + EA+ LF + +
Sbjct: 293 LISLTAF---YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF 134
NI D T+ S + A A +G+LEL +W+ Y+ K+ +DIF +LIDMY KC +V+F
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEF 409
Query: 135 T--------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ MI+G + G G +A++++ M +A + P++V ++G+L+A H
Sbjct: 410 ARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469
Query: 181 N 181
+
Sbjct: 470 S 470
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +V+G N Q+ AR+ FD+ D +W +I Y R N +R+ + +++ ++ + +
Sbjct: 92 TKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH 151
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVK 133
D FT +L A L L I I K +D+F N L+ +Y KC V
Sbjct: 152 PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVV 211
Query: 134 F---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
F +WT++I G A +G +AL MFSQM +KPD +A V +L A T
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYT 266
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +V+ Y + +A+ FD + R V WT++I GY + + EAL +F +++
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMR 247
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + D +VSIL A ++ LE G I ++ K ++++ +L Y KC
Sbjct: 248 NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVT 307
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
T W MI G A +G+ ++A+++F M+ +IKPD V
Sbjct: 308 VAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSV 357
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ T+++ Y V+ AR+ FD+ ++D V+W+ MI GY + EA+ L+ ++
Sbjct: 390 DIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMK 449
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + ++ T + +LTA + G ++ G
Sbjct: 450 QAGVFPNDVTFIGLLTACNHSGLVKEG 476
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +RV + AL LF+++Q
Sbjct: 166 DVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQ 225
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ +N V D+ N+LI+MYCKC
Sbjct: 226 KS-FEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCG 284
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F M++ ++KP+ V +V +
Sbjct: 285 SLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVAL 344
Query: 175 LSARTH 180
L A H
Sbjct: 345 LIACNH 350
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DVI + ++ G+ R VD+ F QM +R V W MI + R E
Sbjct: 163 KVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSE 222
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA-GNALI 124
AL LF ++ DE T+V++L A LG++++G+WI +Y + + D A GNAL+
Sbjct: 223 ALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALV 282
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
D Y K + +W T+I GLA++GNG+ +++ +M+ ++P++
Sbjct: 283 DFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDA 342
Query: 170 AYVGVLSARTH 180
+VGVLS H
Sbjct: 343 TFVGVLSCCAH 353
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 48/207 (23%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
++S+ + G +N+ + A + F Q +L+ MI GY F E+ LF ++
Sbjct: 43 ILSHFVSICGSLNK--MAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKN 100
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYI--------------------------D 109
I DE+T+ +L A ++LG L+LG+ + + D
Sbjct: 101 RGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMED 160
Query: 110 KNKV-----KNDIFAGNALIDMYCK--------CTVK-------FTWTTMIVGLAISGNG 149
KV + D+ N +I +CK C + +W MI LA S
Sbjct: 161 AEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRD 220
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLS 176
+AL +F ML KPDE V VL
Sbjct: 221 SEALGLFHDMLDWGFKPDEATVVTVLP 247
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+V Y + AR+ FD+MP ++ + W T+I G + L +E+ +
Sbjct: 279 NALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVR 338
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
++ T V +L+ A+ G E G E + + ++ ++++ + ++D+
Sbjct: 339 PNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDL------------ 386
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
L SG +A D+ M + P+ + +LSA RTH
Sbjct: 387 ----LGRSGCVREAYDLIRIMPGGA--PNAALWGSLLSACRTH 423
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 108/196 (55%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++ M KDVIS+T+IV+ Y + A + F P +D V WT M+ GY +
Sbjct: 198 VGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQN 257
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL F+++ + + DE ++ ++A A LGA+ WI+ D++ + ++ G
Sbjct: 258 AMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVG 317
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML-RASI 164
+ L+DMY KC + +T+++MIVGLA G + A+ +F+ M+ RA +
Sbjct: 318 SGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADV 377
Query: 165 KPDEVAYVGVLSARTH 180
+P+ V ++GVL+A +H
Sbjct: 378 EPNHVTFIGVLTACSH 393
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 102/177 (57%), Gaps = 16/177 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-I 78
TA++ Y +D AR+ F+ MP R+ V W +MI GY + + A+ LF+E+ T+ +
Sbjct: 299 TALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK----- 133
DE T+VS+++A +LGALELG W+ ++ +N++K I NA+I MY +C
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 134 ----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
++ T+I G A G+G +A+++ S M I+PD V ++GVL+A +H
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 475
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M ++VI++TA+V+GY + ++ AR+ FD MPER V W M+ GY + EA
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEA 244
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+ + I DE T V++++A ++ G L + + + +++ + F AL+DM
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDM 304
Query: 127 YCK-----CTVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 170
Y K K TW +MI G A +G A+++F +M+ A + PDEV
Sbjct: 305 YAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVT 364
Query: 171 YVGVLSARTH 180
V V+SA H
Sbjct: 365 MVSVISACGH 374
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
+ + A++ Y ++ A++ F +M RD V + T+I G+ EA+ L ++
Sbjct: 397 ISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKE 456
Query: 76 SNIMGDEFTIVSILTARANLGALELG 101
I D T + +LTA ++ G LE G
Sbjct: 457 GGIEPDRVTFIGVLTACSHAGLLEEG 482
>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 476
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D ++ + + +VD AR FD MP R W+ M+ Y R +R +A+ LF +Q
Sbjct: 152 DAVACNSAIVALARAGRVDEARAVFDGMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQ 211
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + +VS+L A+LGALE G W+ YIDK+ V + AL+DMYCKC
Sbjct: 212 AEGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIR 271
Query: 131 -------------TVKF-TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
K +W +M++G A+ G +A +FS++ ++PD V ++ +L
Sbjct: 272 KAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPHGLRPDNVTFIAILM 331
Query: 177 ARTHN 181
A H+
Sbjct: 332 AYGHS 336
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTS 76
TA+V Y + AR+ FD R W +M+ G+ ++REA LF E++
Sbjct: 258 TALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLGHAVHGQWREAAALFSELRPH 317
Query: 77 NIMGDEFTIVSILTARANLG 96
+ D T ++IL A + G
Sbjct: 318 GLRPDNVTFIAILMAYGHSG 337
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTM----KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
+G + +I G M N D+ + +A++ Y N + +R FD+M +D V+W +M G
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y++ + EAL LF E+Q S DEFT +++TA NL +++LG+ + K ++ +
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589
Query: 117 IFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ NAL+DMY KC W ++I A G G KAL M +M+
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 162 ASIKPDEVAYVGVLSARTH 180
I+P+ + +VGVLSA +H
Sbjct: 650 EGIEPNYITFVGVLSACSH 668
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV T ++ Y+ +D AR FD +PE+ V WTTMI G +++ R +L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N++ D + + ++L+A + L LE G+ I +I + ++ D N LID Y KC
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WTT++ G + +A+++F+ M + +KPD A +L++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y+ +V A + F+ MP ++ + WTT++ GY + +EA+ LF + + D
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------- 132
+ SILT+ A+L AL G + Y K + ND + N+LIDMY KC
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409
Query: 133 ------KFTWTTMIVGLAISGNG---DKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ MI G + G +AL++F M I+P + +V +L A
Sbjct: 410 IFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTA 91
AR+ FD D VL+ MI+GY R+ EAL +F++++ I T VS+L A
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
A+L +L L + I + K + DIFAG+ALID+Y C VK W
Sbjct: 464 SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIW 523
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+M G ++AL++F ++ + +PDE + +++A
Sbjct: 524 NSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTA 564
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARA 93
AR+ F++MPER+ V W+TM+ + E+L +F E +T +E+ + S + A +
Sbjct: 98 ARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157
Query: 94 NLGALELGEW----IKTYIDKNKVKNDIFAGNALIDMYC-----------------KCTV 132
L G W +++++ K+ D++ G LID Y K TV
Sbjct: 158 GLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTV 215
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWTTMI G G +L +F Q++ ++ PD VLSA
Sbjct: 216 --TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSA 258
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + FD RD V W ++I Y ++AL + +++ + I
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP 654
Query: 81 DEFTIVSILTARANLGALELG 101
+ T V +L+A ++ G +E G
Sbjct: 655 NYITFVGVLSACSHAGLVEDG 675
>gi|341606425|gb|AEK83315.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEXDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 17/194 (8%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
GF LE G ++ DV +++V Y D A++ FD+MP R+ V WT +I GY++
Sbjct: 228 GFYLEA-GRVRC-DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGR 285
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
F + + +F+E+ S++ +E T+ S+L+A A++GAL G + Y+ KN ++ + G
Sbjct: 286 CFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGT 345
Query: 122 ALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
LID Y KC +TWT MI G A G A+D+F ML + + P
Sbjct: 346 TLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSP 405
Query: 167 DEVAYVGVLSARTH 180
+EV ++ VLSA H
Sbjct: 406 NEVTFIVVLSACAH 419
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ +++SGY N + + FD ++D V WT MIDG++R + EA+T F E
Sbjct: 135 DSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVE 194
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKT-YIDKNKVKNDIFAGNALIDMYCKCT 131
++ S + +E T+VS+L A + G I Y++ +V+ D+F G++L+DMY KC
Sbjct: 195 MKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCG 254
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
TWT +I G +K + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS 314
Query: 177 ARTH 180
A H
Sbjct: 315 ACAH 318
Score = 38.9 bits (89), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F+++ E++ WT MI+G+ A+ LF + +S++ +E T + +L+A A+ G +
Sbjct: 364 FERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLV 423
Query: 99 ELG 101
E G
Sbjct: 424 EEG 426
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ A++ Y +++A + FD+M ERD V W+T+I +L EAL LF+++Q
Sbjct: 118 DIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQ 177
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
+ ++ DE T++S+++A ++LG LELG W++ +I + + G ALIDM+ +C
Sbjct: 178 LEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSI 237
Query: 131 ---TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
V F TWT +I GL I G +AL MF M ++ ++PD V + GVL A
Sbjct: 238 DESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVAC 297
Query: 179 TH 180
+H
Sbjct: 298 SH 299
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF--REALTLFQEIQTSNIMGDEFTIVS 87
E + AR F ++P D + + T+I + +RF +L+ F ++++ I D FT
Sbjct: 36 ESLSYARYVFSRIPSPDTIAYNTIIRSH---SRFFPSHSLSYFFSMRSNGIPLDNFTFPF 92
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVK--------- 133
+L A + L ++ + + I K + +DIF NALI +Y C VK
Sbjct: 93 VLKACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERD 149
Query: 134 -FTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSARTH 180
+W+T+I +G +ALD+F +M L + PDEV + V+SA +H
Sbjct: 150 SVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISH 198
Score = 42.7 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D + F++M R+ + WT +I+G R EAL +F ++ S +
Sbjct: 225 TALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQ 284
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
D T +L A ++ G ++ G I I K ++ + L+D Y C V
Sbjct: 285 PDYVTFSGVLVACSHGGLVKEGWDIFESIRK------VYGMDPLLDHY-GCMVD------ 331
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I+G A G ++A D +M +KP+ + + +L A
Sbjct: 332 ILGRA--GLLNEAYDFVERM---PMKPNSIIWRTLLGA 364
>gi|404357595|gb|AFR63790.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357619|gb|AFR63802.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357629|gb|AFR63807.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357647|gb|AFR63816.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358079|gb|AFR64032.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358091|gb|AFR64038.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358103|gb|AFR64044.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358107|gb|AFR64046.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404358109|gb|AFR64047.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y V+ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLVNHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 108/196 (55%), Gaps = 16/196 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G ++F M KDVIS+T+IV Y + A + F P +D V WT M+ GY +
Sbjct: 209 VGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQN 268
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+AL F+++ + + DE ++ ++A A LGA++ W++ ++N + ++ G
Sbjct: 269 AMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVG 328
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQML-RASI 164
+ L+DMY KC + +T+++MIVGLA G + + +F+ M+ RA +
Sbjct: 329 SGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADV 388
Query: 165 KPDEVAYVGVLSARTH 180
+P+ V ++GVL+A +H
Sbjct: 389 EPNHVTFIGVLTACSH 404
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 24/196 (12%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DV+++ ++ GY V A+ FDQMP RD V + +M+ GY++ E
Sbjct: 248 DLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNME 307
Query: 66 ALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN--- 121
AL +F +++ S++ DE T+V +L+A A LG L + YI V+ F G
Sbjct: 308 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYI----VEKQFFLGGKLG 363
Query: 122 -ALIDMYCKC------TVKFT---------WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
ALIDMY KC + F W MI GLAI G G+ A DM ++ R SIK
Sbjct: 364 VALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIK 423
Query: 166 PDEVAYVGVLSARTHN 181
PD++ +VG+L+A +H+
Sbjct: 424 PDDITFVGILNACSHS 439
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 28/181 (15%)
Query: 1 MGFTLEIFGTMKN--KDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGY 57
+G E+F M K++IS+ +++SGY + V+IA + F +MPE+D + W ++IDGY
Sbjct: 178 IGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGY 237
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
++ R +A LF + +++ T +++ A LG + KT D+ + D+
Sbjct: 238 VKHGRMEDAKDLFYVMPRRDVV----TWATMIDGYAKLGFVHKA---KTLFDQMPHR-DV 289
Query: 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 176
A N +M+ G + +AL++FS M + S + PDE V VLS
Sbjct: 290 VAYN----------------SMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLS 333
Query: 177 A 177
A
Sbjct: 334 A 334
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 33/204 (16%)
Query: 1 MGFT---LEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTM 53
+GF ++I G ++ D+ ++ Y+ + ARQ FD+MP+RD V + +M
Sbjct: 109 LGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSM 168
Query: 54 IDGYLRVNRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNK 112
IDGY++ A LF ++M E ++S + + G I + +
Sbjct: 169 IDGYVKCGLIGSARELF------DLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEM 222
Query: 113 VKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFS 157
+ D+ + N+LID Y K TW TMI G A G KA +F
Sbjct: 223 PEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFD 282
Query: 158 QMLRASIKPDEVAYVGVLSARTHN 181
QM D VAY +++ N
Sbjct: 283 QMPHR----DVVAYNSMMAGYVQN 302
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + + AL F + + + D+F++ +L A + LG ++ G I
Sbjct: 60 DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 119
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 120 GFLRKTGIWSDLFLQNCLIGLYLKC 144
>gi|341606397|gb|AEK83301.1| At3g62890-like protein [Capsella grandiflora]
gi|341606419|gb|AEK83312.1| At3g62890-like protein [Capsella grandiflora]
gi|341606421|gb|AEK83313.1| At3g62890-like protein [Capsella grandiflora]
gi|341606423|gb|AEK83314.1| At3g62890-like protein [Capsella grandiflora]
gi|341606427|gb|AEK83316.1| At3g62890-like protein [Capsella grandiflora]
gi|341606431|gb|AEK83318.1| At3g62890-like protein [Capsella grandiflora]
gi|341606433|gb|AEK83319.1| At3g62890-like protein [Capsella grandiflora]
gi|341606435|gb|AEK83320.1| At3g62890-like protein [Capsella grandiflora]
gi|341606437|gb|AEK83321.1| At3g62890-like protein [Capsella grandiflora]
gi|341606449|gb|AEK83327.1| At3g62890-like protein [Capsella grandiflora]
gi|341606451|gb|AEK83328.1| At3g62890-like protein [Capsella grandiflora]
gi|341606455|gb|AEK83330.1| At3g62890-like protein [Capsella grandiflora]
gi|341606457|gb|AEK83331.1| At3g62890-like protein [Capsella grandiflora]
gi|341606459|gb|AEK83332.1| At3g62890-like protein [Capsella grandiflora]
gi|341606463|gb|AEK83334.1| At3g62890-like protein [Capsella grandiflora]
gi|341606465|gb|AEK83335.1| At3g62890-like protein [Capsella grandiflora]
gi|341606467|gb|AEK83336.1| At3g62890-like protein [Capsella grandiflora]
gi|341606469|gb|AEK83337.1| At3g62890-like protein [Capsella grandiflora]
gi|341606471|gb|AEK83338.1| At3g62890-like protein [Capsella grandiflora]
gi|341606473|gb|AEK83339.1| At3g62890-like protein [Capsella grandiflora]
gi|341606477|gb|AEK83341.1| At3g62890-like protein [Capsella grandiflora]
gi|341606479|gb|AEK83342.1| At3g62890-like protein [Capsella grandiflora]
gi|341606481|gb|AEK83343.1| At3g62890-like protein [Capsella grandiflora]
gi|341606483|gb|AEK83344.1| At3g62890-like protein [Capsella grandiflora]
gi|341606485|gb|AEK83345.1| At3g62890-like protein [Capsella grandiflora]
gi|341606487|gb|AEK83346.1| At3g62890-like protein [Capsella grandiflora]
gi|341606489|gb|AEK83347.1| At3g62890-like protein [Capsella grandiflora]
gi|341606491|gb|AEK83348.1| At3g62890-like protein [Capsella grandiflora]
gi|341606493|gb|AEK83349.1| At3g62890-like protein [Capsella grandiflora]
gi|341606495|gb|AEK83350.1| At3g62890-like protein [Capsella grandiflora]
gi|341606497|gb|AEK83351.1| At3g62890-like protein [Capsella grandiflora]
gi|341606501|gb|AEK83353.1| At3g62890-like protein [Capsella grandiflora]
gi|341606503|gb|AEK83354.1| At3g62890-like protein [Capsella grandiflora]
gi|341606505|gb|AEK83355.1| At3g62890-like protein [Capsella grandiflora]
gi|341606507|gb|AEK83356.1| At3g62890-like protein [Capsella grandiflora]
gi|341606509|gb|AEK83357.1| At3g62890-like protein [Capsella grandiflora]
gi|399107028|gb|AFP20302.1| At3g62890-like protein, partial [Capsella grandiflora]
gi|399107030|gb|AFP20303.1| At3g62890-like protein, partial [Capsella grandiflora]
gi|399107032|gb|AFP20304.1| At3g62890-like protein, partial [Capsella grandiflora]
Length = 183
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M ++V+ + +V G+ + V F QM ER V W +MI +
Sbjct: 675 MGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKC 734
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFA 119
R REAL LF E+ DE T+V++L A+LG L+ G+WI + + N +K+ I
Sbjct: 735 GRDREALELFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITV 794
Query: 120 GNALIDMYCK------CTVKF---------TWTTMIVGLAISGNGDKALDMFSQML-RAS 163
GNAL+D YCK T F +W TMI G A++G G+ +D+F M+
Sbjct: 795 GNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGK 854
Query: 164 IKPDEVAYVGVLS 176
+ P+E ++GVL+
Sbjct: 855 VAPNEATFLGVLA 867
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++G+ QV + ++ FD+MPERD + W TM+ Y+ + EAL F+ ++ S ++ D
Sbjct: 1 MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------- 132
E T+V++L+A A L LE G+ I + ID + I G AL+DMY KC
Sbjct: 61 EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120
Query: 133 ------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW MI GLA G G AL +F + L + P V +VGVL+A
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNA 171
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y ++ +R F+ MP RD W MI G ++ALTLF+ +
Sbjct: 100 TALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLH 159
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T V +L A + G ++ G + + D ++ ++ ++D+ + + F
Sbjct: 160 PMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIK 219
Query: 139 MIVGLAISGN 148
+I +AIS +
Sbjct: 220 VIESMAISPD 229
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M K V+S+T+++ V+ AR FD MPER+ V W MI Y++ + EAL
Sbjct: 271 FEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEAL 330
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ ++Q+ + DE T+V++L+A +G L +G+ + YI N D+ N+L+DMY
Sbjct: 331 DLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMY 390
Query: 128 CKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC T W +I GLA+ G + F M+ S PD + +V
Sbjct: 391 AKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFV 450
Query: 173 GVLSARTH 180
+LSA +H
Sbjct: 451 ALLSACSH 458
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 46/203 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + + +R+ FD+M +R+ V W +MI GY + RE +LF E++ +
Sbjct: 152 ALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE 211
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------- 130
DEFT+VS+L A + G LE+G + + + + D+ +AL+DMY KC
Sbjct: 212 DEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCF 271
Query: 131 -------TVKFT-----------------------------WTTMIVGLAISGNGDKALD 154
V +T W MI G +ALD
Sbjct: 272 EMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALD 331
Query: 155 MFSQMLRASIKPDEVAYVGVLSA 177
+++QM + PDE+ V VLSA
Sbjct: 332 LYNQMQSQGLAPDEITLVAVLSA 354
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD +P D V++ T+I Y + REAL L + + I+ +EFT+ ++ A
Sbjct: 65 ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF----------TWTTM 139
A E + + + +F GNAL+ Y + +F +W +M
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A +G+ + +F +M R DE V +L A
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIA 222
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L I + N DV +++ Y QVD A F +M R+ V W +I G R
Sbjct: 369 LYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRAL 428
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNAL 123
+ +T F+ + T + D T V++L+A ++ G LE G+ + ++ VK+++ +
Sbjct: 429 DTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACM 488
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+D+ L G+ +KA+ + +M +KPD V + +L A R H
Sbjct: 489 VDL----------------LGRRGHLEKAVCLIKEM---PMKPDVVVWGALLGACRIH 527
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 15/192 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
++F M ++VIS+ A++SG+ QV+ A + F MPE + V W MI GY + +
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
AL LF ++Q ++ + T +L A A L LE G + ++ ++D+ GN L
Sbjct: 370 ENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTL 429
Query: 124 IDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+ MY KC + + MIVG AI+G ++L++F QM +KPD
Sbjct: 430 VGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDR 489
Query: 169 VAYVGVLSARTH 180
V +VGVLSA H
Sbjct: 490 VTFVGVLSACCH 501
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR 62
F E+F M +DV+S+ A+++GY+ ++ A + F ++P+RD + W TM+ GY +
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGD 275
Query: 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI--KTYIDKNKVKNDIFAG 120
A+ LF+++ N++ I + + A +L + + + I N V + FA
Sbjct: 276 VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISG-FAQ 334
Query: 121 NALIDMYCK-------CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
N ++ K C V +W MI G + +G + AL +F QM +KP+ +
Sbjct: 335 NGQVEEALKLFKTMPECNV-VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393
Query: 174 VLSA 177
VL A
Sbjct: 394 VLPA 397
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+D+ +VS Y+ + AR+ FD+MP ++ V WT MI Y R +EAL F E+
Sbjct: 98 QDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM 157
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-CTV 132
Q I + FT SIL A +L LGE+ I K ++++F GN L+DMY K +
Sbjct: 158 QDVGIQPNHFTFASILPACTDLEV--LGEF-HDEIVKGGFESNVFVGNGLVDMYAKRGCI 214
Query: 133 KF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+F +W MI G +G + AL +F ++ + +
Sbjct: 215 EFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV 260
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ +V Y ++ AR+ FD+M ++D + MI GY +E+L LF+++Q
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQ 481
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ + D T V +L+A + G ++ G + Y D + Y
Sbjct: 482 FTGLKPDRVTFVGVLSACCHAGLVDEG---RQYFD------------IMTRFYHITPAME 526
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+ MI L +G D+A D+ ++M IKPD + +LSA RTHN
Sbjct: 527 HYGCMIDLLGRAGCFDEANDLINKM---PIKPDADMWGSLLSACRTHN 571
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112
++ + R REAL + Q++ + I T S+L N +L + + ++ + +
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94
Query: 113 VK-NDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDKALDMF 156
+ DI GN L+ +Y K VK +WT MI A +G +AL F
Sbjct: 95 FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154
Query: 157 SQMLRASIKPDEVAYVGVLSART 179
+M I+P+ + +L A T
Sbjct: 155 YEMQDVGIQPNHFTFASILPACT 177
>gi|341606403|gb|AEK83304.1| At3g62890-like protein [Capsella grandiflora]
gi|341606413|gb|AEK83309.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVBSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 111/193 (57%), Gaps = 17/193 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F KD +S+ +++ Y R ++ AR F+++PERD V W MI G++R
Sbjct: 199 KLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVY 258
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGNAL 123
A+ LF+++Q D T++S+L+A A+ G +++G + + + + ++ + GNAL
Sbjct: 259 AMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNAL 318
Query: 124 IDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
IDMY KC ++K TW ++I GLA+ G+ +++D+F +ML+ ++PDE
Sbjct: 319 IDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDE 378
Query: 169 VAYVGVLSARTHN 181
+ +V VL A +H
Sbjct: 379 ITFVAVLIACSHG 391
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 19/169 (11%)
Query: 9 GTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
G + + + S R + A FDQ+P D ++ T+I G R+A++
Sbjct: 35 GFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVS 94
Query: 69 LFQEIQTSNIMG----DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
L+ + G D+ T +L A +GA G + ++ K ++D F NALI
Sbjct: 95 LYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALI 154
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQ 158
M+ C W+ MI G A G+ A +F +
Sbjct: 155 GMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDE 203
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
VI A++ Y + A Q F M ++D W ++I G E++ +F+++
Sbjct: 312 VILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLK 371
Query: 76 SNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDM 126
+ DE T V++L A ++ G ++ G E+ +++ ++ ++DM
Sbjct: 372 EKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDM 423
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 16/183 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI 73
+ V +V Y + ++ A F++MP+ V W T+ID + R++EA+ LF +
Sbjct: 84 EHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGRYKEAIELFFRM 143
Query: 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
S + D+ T V L+A A LG L++G + + ID + N + N+LIDMY KC V
Sbjct: 144 LQSGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGLGNVVSVSNSLIDMYAKCGVV 203
Query: 134 ---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSA 177
+W TMI+GLA+ G+GD+AL++FS+ML + P+EV ++GVL A
Sbjct: 204 EAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCA 263
Query: 178 RTH 180
+H
Sbjct: 264 CSH 266
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D A + F ++ D LW TMI G R + +A ++ +Q + D FT ++
Sbjct: 1 MDYALRVFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEVLDNFTYSFLVKV 60
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY---------------CKCTVKFTW 136
LG+ LG+ I + K+ ++ +F N L+ MY + W
Sbjct: 61 CGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAW 120
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T+I G +A+++F +ML++ +KPD+ +V LSA
Sbjct: 121 NTIIDCNVYCGRYKEAIELFFRMLQSGLKPDDATFVVTLSA 161
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-GDEFTIVSILT 90
V+ A + F++M R+ V W TMI G EAL LF ++ + +E T + +L
Sbjct: 203 VEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLC 262
Query: 91 ARANLGALELGEWIKTYID--------KNKVKN-----DIFAGNALIDMYCKC------- 130
A ++ G +E G + Y D + +K+ DI L++ +
Sbjct: 263 ACSHGGMVEEG---RRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE 319
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+ W T++ + GN + A + Q+L ++PD
Sbjct: 320 SNSIVWRTLLAACRVHGNLELAEQVRQQLL--ELEPDH 355
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 24/195 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF +F T TA+V Y + AR+ FD + ERD LWT++I GY++
Sbjct: 351 LGFERHLFAT---------TALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQN 401
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL L++ ++T+ I+ ++ T+ S+L A ++L LELG+ + + K+ ++ G
Sbjct: 402 SDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG 461
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL MY KC + F +W MI GL+ +G GD+AL++F +ML ++
Sbjct: 462 SALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGME 521
Query: 166 PDEVAYVGVLSARTH 180
PD+V +V ++SA +H
Sbjct: 522 PDDVTFVNIISACSH 536
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ T++V Y V+ + F MPER+ W+TM+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 75 TSNIMG--DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
G ++ ++L++ A + LG I KN + + NAL+ MY KC
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW+ M+ G + +G +A+ +FS+M A IKP E VGVL+A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y E ++ A + FD +R+ + W+ M+ GY + EA+ LF + ++ I
Sbjct: 261 ALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKP 320
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CTVKFT--- 135
E+TIV +L A +++ LE G+ + +++ K + +FA AL+DMY K C
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380
Query: 136 ----------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT++I G + + ++AL ++ +M A I P++ VL A
Sbjct: 381 DCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKA 432
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT---LFQEIQTSNI 78
+V+ Y ++ A F+ + +D V W ++I GY + + T LF+E++ +I
Sbjct: 55 LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI 114
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
+ + +T+ I A ++L + +G + K DI+ +L+ MYCK +
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV--GVLSA 177
+TW+TM+ G A G ++A+ +F+ LR + + YV VLS+
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F + P +D V W MI G + EAL LF+E+ + D+ T V+I++A ++ G +
Sbjct: 481 FRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFV 540
Query: 99 ELG 101
E G
Sbjct: 541 ERG 543
>gi|341606391|gb|AEK83298.1| At3g62890-like protein [Capsella grandiflora]
gi|341606409|gb|AEK83307.1| At3g62890-like protein [Capsella grandiflora]
gi|341606411|gb|AEK83308.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHXYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 16/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++FG M +++ S+ +++GY ++ +AR+ F +MP RD V W+TMI G+ F E
Sbjct: 190 DVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDE 249
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A F+E+ I +E ++ +L+A A GA E G+ + +++K NALID
Sbjct: 250 AFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALID 309
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
Y KC +WT++I GLA+ G G++A+ +F +M + ++PD +
Sbjct: 310 TYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGI 369
Query: 170 AYVGVLSARTHN 181
++ +L A +H+
Sbjct: 370 TFISLLYACSHS 381
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F MP R V WT++I G EA+ LF E++ S +
Sbjct: 306 ALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVR 365
Query: 80 GDEFTIVSILTARANLGALELG 101
D T +S+L A ++ G +E G
Sbjct: 366 PDGITFISLLYACSHSGLVEEG 387
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F +M +D IS+TA+++ + +D ARQCFD MPER+ + W +M+ Y++ E +
Sbjct: 433 FRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGM 492
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ +++ + D T + + A A+L ++LG + +++ K + +D+ N+++ MY
Sbjct: 493 KLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMY 552
Query: 128 CKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+C VK +W M+ A +G G+KA++ + MLR KPD ++YV
Sbjct: 553 SRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYV 612
Query: 173 GVLS 176
VLS
Sbjct: 613 AVLS 616
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +++ + + +++ GY A F +MPERD+V W T+I + +
Sbjct: 199 VFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRC 258
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+ F E+ + T S+L+A A++ L+ G + I + + D F G+ LIDM
Sbjct: 259 LSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDM 318
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC + +WT +I G+A G D AL +F+QM +AS+ DE
Sbjct: 319 YAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTL 378
Query: 172 VGVL 175
+L
Sbjct: 379 ATIL 382
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 15/155 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+ ++ Y + +AR+ F+ + E++ V WT +I G + +AL LF +++ ++++
Sbjct: 313 SGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVV 372
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVK 133
DEFT+ +IL + GE + Y K+ + + + GNA+I MY +C ++
Sbjct: 373 LDEFTLATILGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLA 432
Query: 134 F---------TWTTMIVGLAISGNGDKALDMFSQM 159
F +WT MI + +G+ D+A F M
Sbjct: 433 FRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMM 467
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 52/226 (23%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGY---- 57
+F + ++ ++ ++ + + ++ A FD+MP RD V WTTMI GY
Sbjct: 58 AFRVFREANHANIFTWNTMLHAFFDSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNG 117
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
L + + +++ ++ D F+ + A L + + ++ K +
Sbjct: 118 LPAHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQT 177
Query: 118 FAGNALIDMYCKC---------------TVKFTWTTMIVGLA------------------ 144
N+L+DMY KC F W +MI G +
Sbjct: 178 CIQNSLVDMYIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPER 237
Query: 145 --------IS-----GNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
IS G+G + L F +M KP+ + Y VLSA
Sbjct: 238 DHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSA 283
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F +M +D IS+TA+++ + +D ARQCFD MPER+ + W +M+ Y++ E +
Sbjct: 433 FRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGM 492
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L+ +++ + D T + + A A+L ++LG + +++ K + +D+ N+++ MY
Sbjct: 493 KLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMY 552
Query: 128 CKC-------------TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
+C VK +W M+ A +G G+KA++ + MLR KPD ++YV
Sbjct: 553 SRCGQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISYV 612
Query: 173 GVLS 176
VLS
Sbjct: 613 AVLS 616
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +++ + + +++ GY A F +MPERD+V W T+I + +
Sbjct: 199 IFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRC 258
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L+ F E+ + T S+L+A A++ L+ G + I + + D F G+ LIDM
Sbjct: 259 LSTFVEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDM 318
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC + +WT I G+A G GD AL +F+QM +AS+ DE
Sbjct: 319 YAKCGCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTL 378
Query: 172 VGVL 175
+L
Sbjct: 379 ATIL 382
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+AR+ F+ + E++ V WT I G + +AL LF +++ ++++ DEFT+ +IL +
Sbjct: 327 LARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATILGVCS 386
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------TVKF---------TWTT 138
GE + Y K+ + + + GNA+I MY +C ++ F +WT
Sbjct: 387 GQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTA 446
Query: 139 MIVGLAISGNGDKALDMFSQM 159
MI + +G+ D+A F M
Sbjct: 447 MITAFSQNGDIDRARQCFDMM 467
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 52/226 (23%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGY---- 57
+F + ++ ++ ++ + + ++ A FD+MP RD V WTTMI GY
Sbjct: 58 AFRVFREANHANIFTWNTMLHAFFDSGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNG 117
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
L + + +++ ++ D F+ + A L + L + ++ K +
Sbjct: 118 LPGHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQT 177
Query: 118 FAGNALIDMYCKCTV---------------KFTWTTMIVGLA------------------ 144
N+L+DMY KC F W +MI G +
Sbjct: 178 CIQNSLVDMYIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPER 237
Query: 145 --------IS-----GNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
IS G+G + L F +M KP+ + Y VLSA
Sbjct: 238 DHVSWNTLISVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSA 283
>gi|341606405|gb|AEK83305.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVXSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV+S+ +++ G++ Q+ +A++ F +MPE+D + W T+I G ++ +AL F+E
Sbjct: 197 SRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKE 256
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + +E +VS+L A A LG LE G+ I + + + G AL+DMY KC
Sbjct: 257 LGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGC 316
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
K++W MI GLA G G +AL +F + L P V ++GVL+A
Sbjct: 317 IDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTA 376
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 51/211 (24%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++++ AI S + D A ++ + MI +++ + R +++L+ +
Sbjct: 68 HLLAFLAISSSSLPS---DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMC 124
Query: 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--- 130
S + ++ T+ +L A +N A+ G ++T++ K D+F NALI +YC C
Sbjct: 125 RSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRV 184
Query: 131 -TVK------------FTWTTMIVGLA--------------------------ISG---N 148
+ K +W +MIVG ISG N
Sbjct: 185 ESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQN 244
Query: 149 G--DKALDMFSQMLRASIKPDEVAYVGVLSA 177
G +KALD F ++ ++P+E V +L+A
Sbjct: 245 GELEKALDYFKELGEQKLRPNEAILVSLLAA 275
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 21/163 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y +D +R FD+MPE+D W MI G +EAL LF++ T
Sbjct: 305 TALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFH 364
Query: 80 GDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
T + +LTA + G + G+ + K D ++ ++ ++D+
Sbjct: 365 PVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDL------------ 412
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL-SARTH 180
L+ +G A++M ++M PD V + VL S + H
Sbjct: 413 ----LSRAGFVYDAVEMINRM---PAPPDPVLWASVLGSCQVH 448
>gi|3249111|gb|AAC24094.1| T12M4.7 [Arabidopsis thaliana]
Length = 412
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ +++G N + A ++MP R V WTT+IDGY RV++ +E
Sbjct: 87 KVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKE 146
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNAL 123
A+ LF + I +E TI++IL A NLG L++ + Y+ K V DI N+L
Sbjct: 147 AILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSL 206
Query: 124 IDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ID Y KC KF +WTTMI AI G G +A+ MF M R +KP
Sbjct: 207 IDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKP 266
Query: 167 DEVAYVGVLSARTH 180
+ V + VL+A +H
Sbjct: 267 NRVTMISVLNACSH 280
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D+ +++ Y + A + F ++P ++ V WTTMI + +EA+++F++
Sbjct: 199 DIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKD 258
Query: 73 IQTSNIMGDEFTIVSILTA--RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++ + + T++S+L A L E E+ T +++ K+ D+ L+DM
Sbjct: 259 MERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 314
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 98/165 (59%), Gaps = 18/165 (10%)
Query: 34 IARQCFDQM--PERDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDEFTIVSILT 90
+AR FD+M +R+ V W MI GY + ++ +A+ +F+ +Q ++ ++ T+VS+L
Sbjct: 145 LARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLP 204
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFT 135
A A+LGAL+LG+WI +I + ++ +F GNAL DMY KC +
Sbjct: 205 ACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVIS 264
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
W+ +I GLA+ G+ D+A F +ML KP++V ++G+L+A TH
Sbjct: 265 WSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTH 309
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF------ 134
DEFT S+L A A L + G+ I + K ++++F N+LIDMY K
Sbjct: 91 DEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLF 150
Query: 135 -----------TWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSARTH 180
W MI G A + A+++F M + + P++V V VL A H
Sbjct: 151 DEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ F++M ERD + W+ +I G EA F E+ ++ + +LTA +
Sbjct: 250 ARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTH 309
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154
G ++ G +DK + + ++ Y C V L+ +G DKA D
Sbjct: 310 AGLVKKGLNCFNTMDKE------YGVSPKVEHY-GCVVDL--------LSRAGELDKAED 354
Query: 155 MFSQMLRASIKPDEVAYVGVL 175
M S M +KP+ + + +L
Sbjct: 355 MISSM---PMKPNVIIWGALL 372
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++S Y ++VDIA + F+ + + V W MI GY + R EA+ F ++Q
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
NI D FT+VS++ A A L L +WI + + + ++F AL+DMY KC
Sbjct: 471 LQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVH 530
Query: 135 ---------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW MI G G G AL++F +M + IKP+EV ++ VLSA +
Sbjct: 531 TARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590
Query: 180 HN 181
H+
Sbjct: 591 HS 592
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V + T +V+ Y V+ A + FD+MPERD V W T+I GY + + AL L +Q
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
D TIVSIL A A++G+L +G I Y + ++ + AL+DMY KC
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328
Query: 131 TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T + +W +MI G +G+ A+++F +M+ ++ V +G L A
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHA 386
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y V AR FD+M + V W +MIDGY++ A+ +FQ++ +
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------- 130
T++ L A A+LG +E G ++ +D+ ++ +D+ N+LI MY KC
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434
Query: 131 ------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI+G A +G ++A+D F +M +IKPD V V+ A
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+ T +K+V TA+V Y V AR+ FD M ER W MIDGY + A
Sbjct: 504 VIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAA 563
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101
L LF++++ I +E T + +L+A ++ G +E G
Sbjct: 564 LELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +VS + + A + F + ++ L+ TM+ GY R + +A++ F ++ +
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
+ +L + L G+ I + N +++FA +++MY KC +
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W T+I G A +G G AL++ +M +PD + V +L A
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 19/196 (9%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G+ +F + N +VI TAIV Y +++AR+ F++MPER+ V W MI+ Y +
Sbjct: 238 GYDPFVFAS--NSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYE 295
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
R+ EAL LF + + D+ T +S+L+ A L LGE + Y+ K+ + DI
Sbjct: 296 RYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALAT 355
Query: 122 ALIDMYCK-----CTVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLR-ASI 164
AL+DMY K K WT+MI LAI G+G++AL +F M +S+
Sbjct: 356 ALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSL 415
Query: 165 KPDEVAYVGVLSARTH 180
PD + Y+GVL A +H
Sbjct: 416 VPDHITYIGVLFACSH 431
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V T +++ Y+ + ++ + FD++P+ + V WT +I+GY+ ++ REAL +F+E+
Sbjct: 141 NVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMG 200
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN-------ALIDMY 127
+ +E T+V+ L A A ++ G W+ + K +FA N A+++MY
Sbjct: 201 RWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMY 260
Query: 128 CKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC W MI ++AL +F ML PD+ ++
Sbjct: 261 AKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFL 320
Query: 173 GVLS 176
VLS
Sbjct: 321 SVLS 324
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
E + A F Q+ + ++ +MI GY + N +L L++++ + D FT +L
Sbjct: 55 EYFNYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVL 114
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
A + + G+ + + I K+ + +++ L++MY +C
Sbjct: 115 KACSFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVV 174
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT +I G I+ +AL++F +M R ++ +EV V L A
Sbjct: 175 AWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIA 217
>gi|297818474|ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322958|gb|EFH53379.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 399
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T I+ Y+ + + A + FD++P+ D V W +++GY+R E L +F+E+ +
Sbjct: 51 TGILRIYVEDKVLLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVE 110
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCTV------ 132
DEF++ + LTA A +GAL G+WI ++ K + +++D+F G AL+DMY KC
Sbjct: 111 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVE 170
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTHN 181
F+W +I G A G KA+ +M R IKPD V +GVL+A H
Sbjct: 171 VFEKLSRRNVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHG 229
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 26/172 (15%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y +++A + F+++ R+ W +I GY ++A+T ++
Sbjct: 148 DVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNVFSWAALIGGYAAYGYAKKAMTCLDRME 207
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC 130
+ I D ++ +L A A+ G L+ G + ++ K++ ++ ++D+ C+
Sbjct: 208 REDGIKPDSVVLLGVLAACAHGGFLQEGRAMLGNMEARYGITPKHEHYS--CIVDLMCR- 264
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D ALD+ +M +KP + +L+ RTH
Sbjct: 265 ---------------AGRLDDALDLIEKM---PMKPLASVWGALLNGCRTHK 298
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 113/192 (58%), Gaps = 19/192 (9%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
T ++FG K KDV ++ +VSGY ++ +AR+ FD+MP +D V WT ++ GY++ R+
Sbjct: 258 TFDLFGE-KVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRY 316
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-------- 115
+EAL LF+E++ + + DE T+V++L+A A A+ L + + +++N + +
Sbjct: 317 KEALGLFEEMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLVSRNARVATS 376
Query: 116 --DIFAGNALI----DMYCKCTVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIK 165
I+A + I D++ T +F + MI GLA G G+KA+ +F +M ++
Sbjct: 377 FVHIYAKHGCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLGLQ 436
Query: 166 PDEVAYVGVLSA 177
PD++ +VG+L A
Sbjct: 437 PDDITFVGILCA 448
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 51/199 (25%)
Query: 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93
+A + FD+MP RD V + T+I Y++ R AL +F+ + DE+TI ++L A A
Sbjct: 150 LACKLFDEMPTRDTVSFNTLIGSYVQSGRVERALVVFRNMVEGGFRLDEWTIRALLGACA 209
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGN---ALIDMYCKC---------------TVK-- 133
LG + + + + + +G L+DMY KC VK
Sbjct: 210 GLGDFMVAKAAHGFASRTLRHRLLDSGEVVIGLVDMYVKCGAVHLARKTFDLFGEKVKDV 269
Query: 134 -------------------------------FTWTTMIVGLAISGNGDKALDMFSQMLRA 162
WT ++ G +G +AL +F +M A
Sbjct: 270 RVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRYKEALGLFEEMEAA 329
Query: 163 SIKPDEVAYVGVLSARTHN 181
++ DE+ V VLSA N
Sbjct: 330 GLEADEMTVVTVLSACAQN 348
Score = 36.2 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 20/139 (14%)
Query: 57 YLRVNR-FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115
+LRV R A T Q + D ++ ++L A + L + G I ++ K+ +
Sbjct: 71 FLRVLRDHHPATTGATASQEEGAVPDSRSLSAVLAACSRLESPSPGLCIHAFLLKSGFAS 130
Query: 116 DIFAGNALIDMY---------CKC--------TVKFTWTTMIVGLAISGNGDKALDMFSQ 158
D+FA N+L+ Y CK TV F T+I SG ++AL +F
Sbjct: 131 DVFAANSLLHFYAAFGLHALACKLFDEMPTRDTVSF--NTLIGSYVQSGRVERALVVFRN 188
Query: 159 MLRASIKPDEVAYVGVLSA 177
M+ + DE +L A
Sbjct: 189 MVEGGFRLDEWTIRALLGA 207
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G +F M + V ++ +++ Y+ ++D A F++MP RD V WTTMI G +
Sbjct: 211 LGEARRVFDEMPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNA 270
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFA 119
R EA+ LF ++ +N D T+V++LTA A G L LG W+ ++++ + +
Sbjct: 271 GRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLL 330
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
NALI+MY KC +WTTMI GLAI G ++ALD+F +M
Sbjct: 331 DNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE--- 387
Query: 165 KPDEVAYVGVLSA 177
+PD + VL A
Sbjct: 388 RPDGATLLAVLLA 400
>gi|404357661|gb|AFR63823.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357667|gb|AFR63826.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357677|gb|AFR63831.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357685|gb|AFR63835.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNQVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M K V+S+T+++ VD AR FD MPER+ V W TMI Y++ ++ EAL
Sbjct: 204 FEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEAL 263
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
L++++Q+ DE T+V +L+A +G L +G+ + YI N DI N+L+DMY
Sbjct: 264 DLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMY 323
Query: 128 CKC-----TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC ++ +W +I GLA+ G A+ F M+R + PD + +V
Sbjct: 324 AKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVR-NTSPDGITFV 382
Query: 173 GVLSARTH 180
+LS+ +H
Sbjct: 383 ALLSSCSH 390
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 46/208 (22%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
V A++ Y + + +R+ FD+M R+ V W +MI GY + REA LF E++
Sbjct: 80 VFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRR 139
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----- 130
+GDEFT+ S+L A + G LE G + + + D+ G AL+DMY KC
Sbjct: 140 QGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCM 199
Query: 131 ------------TVKFT-----------------------------WTTMIVGLAISGNG 149
V +T W TMI G
Sbjct: 200 ARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQY 259
Query: 150 DKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ALD++ QM PDE V VLSA
Sbjct: 260 HEALDLYKQMQSHGPAPDEATLVPVLSA 287
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 22/178 (12%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
L I + N D+ +++ Y QVD A + F +M R+ V W +I G R
Sbjct: 302 LYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRAL 361
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNAL 123
+A+T F+ + N D T V++L++ ++ G LE G+ + ++ VK+++ +
Sbjct: 362 DAITFFRSM-VRNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACM 420
Query: 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTH 180
+D+ L G+ +KA+ + +M +KPD V + +L A R H
Sbjct: 421 VDL----------------LGRRGHLEKAVCLIKEM---PMKPDVVVWGALLGACRIH 459
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 15/154 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD + + D V++ T+ Y + REAL L + + ++ +EFT+ ++ A A
Sbjct: 2 FDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAW 61
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKF----------TWTTMIVGL 143
+ + K +F NAL+ Y + +F +W +MI G
Sbjct: 62 DNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGY 121
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
A +G+ +A +F +M R DE +L A
Sbjct: 122 AQAGDTREACALFGEMRRQGFLGDEFTLASLLLA 155
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 102/188 (54%), Gaps = 16/188 (8%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F M +++IS+T +V+GY+ +QV+ AR FD M ER+ V WT MI GY++ RF +AL
Sbjct: 195 FDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDAL 254
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF + + + FT S+L A A +L +G + I K+ + ND+ +L+DMY
Sbjct: 255 KLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMY 314
Query: 128 CKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
KC +++ +W +I G A G +AL+ F +M + PDEV +V
Sbjct: 315 AKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRM-KVVGTPDEVTFV 373
Query: 173 GVLSARTH 180
VLSA H
Sbjct: 374 NVLSACVH 381
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 52/214 (24%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+++S+ +++ Y+ Q+ FD+MP +D V W M+ G+ R F ++
Sbjct: 39 NIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMG 98
Query: 75 TSNIMGDEFTIVSILTA-----------RANLGALELGEWIKTYIDKNKVK--------- 114
+ ++ +++TI ++L A + + A LG ++ ++ + ++
Sbjct: 99 RAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEE 158
Query: 115 -----------NDIFAGNALIDMYCKCTVKF----------------TWTTMIVGLAISG 147
D+ + NAL+ Y + KF +WTT++ G +
Sbjct: 159 ALGRAFNDISMKDVTSWNALVSSYMELG-KFVDAQTAFDQMPQRNIISWTTLVNGYVKNK 217
Query: 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+KA +F M ++ V++ ++S N
Sbjct: 218 QVNKARSVFDDMSERNV----VSWTAMISGYVQN 247
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 16/172 (9%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y + V+IAR FD++P+ D V W +ID ++ + EAL LF ++ S + D
Sbjct: 196 LIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPD 255
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF------ 134
E T+V ++A + LGAL+ G W+ ++++ N I N+LIDMY KC V++
Sbjct: 256 EATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFN 315
Query: 135 --------TWTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSA 177
TW TMI+GLA G+ + AL +FS ML ++ PD V ++ VL A
Sbjct: 316 AVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCA 367
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
FD++ D LW TMI G+ R + A ++ + I D FT +L LG++
Sbjct: 112 FDRIENADGFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSI 171
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGL 143
LG+ + I K + + ++ N LI MY + T W +I
Sbjct: 172 MLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCH 231
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
G ++ALD+F QML++ ++PDE V +SA
Sbjct: 232 VSCGMYNEALDLFVQMLQSGVEPDEATLVVTISA 265
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
+ K + + +++ Y V+ AR+ F+ + ++ V W TMI G +ALTLF
Sbjct: 287 RGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFS 346
Query: 72 EIQTSNI-MGDEFTIVSILTARANLGALELGEWIKTYID 109
+ + D T +++L A G +E G + Y D
Sbjct: 347 NMLAERVETPDGVTFLAVLCACNYGGKVEEG---RRYFD 382
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D++S++ ++ + ++D+AR+ FD MPERD V WT M+ Y + R E L LFQE++
Sbjct: 174 DIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMR 233
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ + DE T++S+++A A LG E+G + ++++N + N+LIDMY KC
Sbjct: 234 LAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLE 293
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TW M++ A G + A +F M+ + + PD V + +L A
Sbjct: 294 EAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYA 353
Query: 180 HN 181
H
Sbjct: 354 HK 355
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + A++ Y + A Q F MP R+ V WT++I+GY N EAL F++++
Sbjct: 214 DVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKC--- 130
NI DE T++ ++ + L + ELGEWI Y+ K +K NAL+DM+ KC
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNI 333
Query: 131 ------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+WT MI GLA+ G+G AL F QM R KPD + ++ +LSA
Sbjct: 334 NRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 179 TH 180
+H
Sbjct: 394 SH 395
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 15/176 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VI TA+++ Y ++ +Q FD+MP+RD V+W +I Y N + + ++
Sbjct: 113 EVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMV 172
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK 133
SN+ + T VSIL+ ++L AL G+ + Y+ KN ++ D+F NALI +Y KC +++
Sbjct: 173 RSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIR 232
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+WT++I G + + ++AL F QM +I+PDE+ +GV+
Sbjct: 233 DAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVV 288
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 10 TMKNKDVISYTAI-VSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
T+ +K V+S+ +I + G +AR+ DQ+ D W T+I GYL N EA+
Sbjct: 11 TLASKLVVSFASITLPG-----TTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAIL 65
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY- 127
++ ++ + D +T+V ++ A + GE I I K + ++ AL+++Y
Sbjct: 66 VYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYG 125
Query: 128 -----CKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
C F W +I A K ++ M+R+++KP+ V V
Sbjct: 126 LFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVS 185
Query: 174 VLS 176
+LS
Sbjct: 186 ILS 188
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT 84
G INR A Q FD M E+ V WT MI G AL F ++Q D
Sbjct: 331 GNINR-----ACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLV 385
Query: 85 IVSILTARANLGALELG 101
+S+L+A ++ G ++ G
Sbjct: 386 FLSLLSACSHAGLVDEG 402
>gi|404357669|gb|AFR63827.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNQVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|404357537|gb|AFR63761.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357547|gb|AFR63766.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357573|gb|AFR63779.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357575|gb|AFR63780.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357579|gb|AFR63782.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357583|gb|AFR63784.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357589|gb|AFR63787.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357593|gb|AFR63789.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357607|gb|AFR63796.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357611|gb|AFR63798.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357615|gb|AFR63800.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357631|gb|AFR63808.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357639|gb|AFR63812.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357651|gb|AFR63818.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357653|gb|AFR63819.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357655|gb|AFR63820.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357657|gb|AFR63821.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357659|gb|AFR63822.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357675|gb|AFR63830.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357679|gb|AFR63832.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357683|gb|AFR63834.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357687|gb|AFR63836.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357689|gb|AFR63837.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357691|gb|AFR63838.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357695|gb|AFR63840.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357697|gb|AFR63841.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357699|gb|AFR63842.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357703|gb|AFR63844.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357707|gb|AFR63846.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357709|gb|AFR63847.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357711|gb|AFR63848.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357713|gb|AFR63849.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357805|gb|AFR63895.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357817|gb|AFR63901.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357829|gb|AFR63907.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357837|gb|AFR63911.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357843|gb|AFR63914.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357845|gb|AFR63915.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357847|gb|AFR63916.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357849|gb|AFR63917.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357851|gb|AFR63918.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357853|gb|AFR63919.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357855|gb|AFR63920.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357857|gb|AFR63921.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357859|gb|AFR63922.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357861|gb|AFR63923.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357863|gb|AFR63924.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357865|gb|AFR63925.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357867|gb|AFR63926.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357869|gb|AFR63927.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357871|gb|AFR63928.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357873|gb|AFR63929.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357875|gb|AFR63930.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357877|gb|AFR63931.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357887|gb|AFR63936.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357889|gb|AFR63937.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357895|gb|AFR63940.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357897|gb|AFR63941.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357899|gb|AFR63942.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357901|gb|AFR63943.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357903|gb|AFR63944.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357905|gb|AFR63945.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357907|gb|AFR63946.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357909|gb|AFR63947.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357911|gb|AFR63948.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357913|gb|AFR63949.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357915|gb|AFR63950.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357917|gb|AFR63951.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357919|gb|AFR63952.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357921|gb|AFR63953.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357927|gb|AFR63956.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357929|gb|AFR63957.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357955|gb|AFR63970.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357971|gb|AFR63978.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 16/171 (9%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y N V A + FD+MPE+D V W ++I+G+ + EAL L+ E+ + I D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
VS+L+A A +GAL LG+ + Y+ K + ++ + N L+D+Y +C
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
+WT++IVGLA++G G +A+++F M + P E+ +VG+L A +H
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTY 107
+W T+I GY + A +L++E++ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 108 IDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKA 152
+ ++ + I+ N+L+ +Y C W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
L ++++M IKPD V +LSA
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSA 231
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQE 72
+++ S ++ Y +V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 73 IQ-TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
++ T ++ E T V IL A ++ G ++ G E+ + ++ K++ I ++D+ +
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 16/171 (9%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y N V A + FD+MPE+D V W ++I+G+ + EAL L+ E+ + I D FTI
Sbjct: 33 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 92
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
VS+L+A A +GAL LG+ + Y+ K + ++ + N L+D+Y +C
Sbjct: 93 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 152
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
+WT++IVGLA++G G +A+++F M + P E+ +VG+L A +H
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 203
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQE 72
+++ S ++ Y +V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 180
Query: 73 IQ-TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ T ++ E T V IL A ++ G ++ G E+ + ++ K++ I ++D+ +
Sbjct: 181 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 240
Query: 131 -TVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
VK W T++ + G+ D L F+++ ++P+
Sbjct: 241 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPNH 292
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVG 142
+ LGE I + + ++ + I+ N+L+ +Y C W ++I G
Sbjct: 4 VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63
Query: 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
A +G ++AL ++++M IKPD V +LSA
Sbjct: 64 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSA 98
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 16/171 (9%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y N V A + FD+MPE+D V W ++I+G+ + EAL L+ E+ + I D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
VS+L+A A +GAL LG+ + Y+ K + ++ + N L+D+Y +C
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
+WT++IVGLA++G G +A+++F M + P E+ +VG+L A +H
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTY 107
+W T+I GY + A +L++E++ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 108 IDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKA 152
+ ++ + I+ N+L+ +Y C W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
L ++++M IKPD V +LSA
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSA 231
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQE 72
+++ S ++ Y +V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 73 IQ-TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
++ T ++ E T V IL A ++ G ++ G E+ + ++ K++ I ++D+ +
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372
>gi|404357879|gb|AFR63932.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357881|gb|AFR63933.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357883|gb|AFR63934.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357885|gb|AFR63935.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357891|gb|AFR63938.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357893|gb|AFR63939.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 21/181 (11%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDY-----VLWTTMIDGYLRVNRFREALTLFQEIQT 75
I+ Y + +++ A++ FD+M +RD V W +MI G + R EAL LF+E+
Sbjct: 147 GIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWD 206
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND-IFAGNALIDMYCKCTVKF 134
D+ T+V+IL A LGA+++GEWI +Y + +++ D I GN+L+D YCKC +
Sbjct: 207 HGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILE 266
Query: 135 T---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T W MI GL +G G+ D+F +M+ ++P++ +VGVLS
Sbjct: 267 TAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCA 326
Query: 180 H 180
H
Sbjct: 327 H 327
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ ++S+ V G +++ + A F Q + +L+ +MI GY +L LF
Sbjct: 39 QSNQILSHFISVCGALDK--MGYANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFS 96
Query: 72 EIQTSNIMGDEFTIVSILTARANL---------------------GALELGEWIKTYIDK 110
+++ I DEFT +L + + + ++ +G I Y
Sbjct: 97 QMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIG-IIDLYTSC 155
Query: 111 NKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
++++ + ++D + +W +MI GL SG +AL++F +M +PD+
Sbjct: 156 GRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDAT 215
Query: 171 YVGVLS 176
V +L
Sbjct: 216 VVTILP 221
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 14 KDVISY-TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+D IS ++V Y ++ A + F++MP+++ V W MI G + LF+E
Sbjct: 246 RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEE 305
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID-KNKVKNDIFAGNALIDMYCKCT 131
+ + ++ T V +L+ A+ G +E G + T + +K++ + ++D+
Sbjct: 306 MINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDL----- 360
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A D+ M ++P+ V + +LSA
Sbjct: 361 -----------LARNGCMEEARDLVRTM---PMRPNAVLWGSLLSA 392
>gi|404357663|gb|AFR63824.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357665|gb|AFR63825.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357671|gb|AFR63828.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357673|gb|AFR63829.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357681|gb|AFR63833.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357693|gb|AFR63839.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357701|gb|AFR63843.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
gi|404357705|gb|AFR63845.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. lyrata]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 86/132 (65%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y ++ AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
G ALIDMY KC
Sbjct: 140 LGTALIDMYAKC 151
>gi|404357561|gb|AFR63773.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 5/132 (3%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ ++
Sbjct: 20 ALRVFDESASKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKY 79
Query: 64 REALTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EAL LF+E+Q + ++FT+ ++L+A LGALE G+W+ +YIDK V+ DI
Sbjct: 80 KEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIV 139
Query: 119 AGNALIDMYCKC 130
ALIDMY KC
Sbjct: 140 LDTALIDMYAKC 151
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 25/199 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER---------DYVLWTTMIDGY 57
+F MKNK + S+ A+++ + D A + F Q+ ER + V W+ +IDG+
Sbjct: 235 LFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQL-ERSGDCPRLRPNVVSWSAIIDGF 293
Query: 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117
R +EAL LF+ +Q + I+ + TI ++L+ A L AL LG I ++ + + N+I
Sbjct: 294 ASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNI 353
Query: 118 FAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
GN L++MY KC +W +MI G + G G AL+ F QM++
Sbjct: 354 LVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKL 413
Query: 163 SIKPDEVAYVGVLSARTHN 181
KPD V +V VLS+ +H+
Sbjct: 414 GFKPDGVTFVAVLSSCSHS 432
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP----ERDYVLWTTMIDGYLRVN 61
+F M + IS+ +VS Y + A + F +M E + V WT++I Y R
Sbjct: 98 HLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSG 157
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
EA+ LF ++ + + +++ A+LGA + I Y K + F +
Sbjct: 158 WHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKS 217
Query: 122 ALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS--- 163
ALI +Y K +W +I A +G D+AL++FSQ+ R+
Sbjct: 218 ALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCP 277
Query: 164 -IKPDEVAYVGVL 175
++P+ V++ ++
Sbjct: 278 RLRPNVVSWSAII 290
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
+GD FT ++ A A +G+ LG+ I ++ + ++ + GN LI MY K
Sbjct: 39 LGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARH 98
Query: 131 -----TVK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+V+ +W TM+ A + + + AL++F +M ++P+ V + ++S+
Sbjct: 99 LFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152
>gi|341606399|gb|AEK83302.1| At3g62890-like protein [Capsella grandiflora]
gi|341606401|gb|AEK83303.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARTLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVXPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 16/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV + A++ Y + A Q F MP R+ V WT++I+GY N EAL F++++
Sbjct: 214 DVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKC-TV 132
NI DE T++ ++ + L + ELGEWI Y+ K VK N L+DM+ KC +
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNI 333
Query: 133 K--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
K +WT MI GLA+ G+G AL F QM R KPD + ++ +LSA
Sbjct: 334 KRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 179 TH 180
+H
Sbjct: 394 SH 395
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 15/176 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+VI TA++S Y ++ +Q FD+MP+RD V+W +I Y N + + ++
Sbjct: 113 EVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMV 172
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVK 133
+SN+ + T VSIL+ ++L AL G+ + Y+ KN ++ D+F NALID+Y KC +++
Sbjct: 173 SSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIR 232
Query: 134 --------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+WT++I G + + ++AL F QM +I+PDE+ +GV+
Sbjct: 233 DAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVV 288
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 10 TMKNKDVISYTAI-VSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
T+ +K V+S+ +I + G +AR+ DQ+ D W T+I GYL N EA+
Sbjct: 11 TLASKLVVSFASITLPG-----TTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAIL 65
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY- 127
++ ++ + D +T+V ++ A + GE I I K + ++ AL+ MY
Sbjct: 66 IYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYG 125
Query: 128 -----CKCTVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173
C F W +I A K ++ M+ +++KP+ V V
Sbjct: 126 LFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVS 185
Query: 174 VLS 176
+LS
Sbjct: 186 ILS 188
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 33 DIARQC--FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
+I R C FD M E+ V WT MI G AL F ++Q D +S+L+
Sbjct: 332 NIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLS 391
Query: 91 ARANLGALELG 101
A ++ G ++ G
Sbjct: 392 ACSHAGLVDEG 402
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ +++G N + A ++MP R V WTT+IDGY RV++ +E
Sbjct: 179 KVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKE 238
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNAL 123
A+ LF + I +E TI++IL A NLG L++ + Y+ K V DI N+L
Sbjct: 239 AILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSL 298
Query: 124 IDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ID Y KC KF +WTTMI AI G G +A+ MF M R +KP
Sbjct: 299 IDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKP 358
Query: 167 DEVAYVGVLSARTH 180
+ V + VL+A +H
Sbjct: 359 NRVTMISVLNACSH 372
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D+ +++ Y + A + F ++P ++ V WTTMI + +EA+++F++
Sbjct: 291 DIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKD 350
Query: 73 IQTSNIMGDEFTIVSILTA--RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++ + + T++S+L A L E E+ T +++ K+ D+ L+DM
Sbjct: 351 MERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 406
>gi|341606393|gb|AEK83299.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPXEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|224578183|gb|ACN57765.1| At3g62890-like protein [Capsella grandiflora]
gi|224578189|gb|ACN57768.1| At3g62890-like protein [Capsella grandiflora]
gi|224578191|gb|ACN57769.1| At3g62890-like protein [Capsella grandiflora]
gi|224578193|gb|ACN57770.1| At3g62890-like protein [Capsella grandiflora]
gi|224578195|gb|ACN57771.1| At3g62890-like protein [Capsella grandiflora]
gi|224578209|gb|ACN57778.1| At3g62890-like protein [Capsella grandiflora]
gi|224578213|gb|ACN57780.1| At3g62890-like protein [Capsella grandiflora]
Length = 152
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 85/129 (65%), Gaps = 5/129 (3%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 2 VFDESVSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 61
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 62 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 121
Query: 122 ALIDMYCKC 130
ALIDMY KC
Sbjct: 122 ALIDMYAKC 130
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 17/178 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ + + AR+ FD++P+ D V W +++GY+R E L +F+E+ +
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLE 215
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCTV------ 132
DEF++ + LTA A +GAL G+WI ++ K +++D+F G AL+DMY KC
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
F+W +I G A G KA+ ++ R IKPD V +GVL+A H
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAH 333
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F ++ R+ W +I GY ++A+T + ++
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLE 312
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCK 129
+ I D ++ +L A A+ G LE G ++ ++ + + +I + ++D+ C+
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG---RSMLENMEARYEITPKHEHYSCIVDLMCR 369
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D AL++ +M +KP + +L+ RTH
Sbjct: 370 ----------------AGRLDDALNLIEKM---PMKPLASVWGALLNGCRTHK 403
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 15/182 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ + ++V+ + +D + FD+M +R+ V W MI GY + +AL LF E++
Sbjct: 403 DIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMR 462
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
+ + D TIVS+L A+ G L LG+WI +++ +N ++ I +L+DMYCKC
Sbjct: 463 SDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 522
Query: 131 -----------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+W+ +IVG G G+ AL +S+ L + +KP+ V ++ VLS+ +
Sbjct: 523 IAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCS 582
Query: 180 HN 181
HN
Sbjct: 583 HN 584
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 15/185 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I T + D T+++ Y+ +DIA + F++ ++D VLWT MI G ++ +
Sbjct: 293 QILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADK 352
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F+++ + T+ S++TA A LG+ LG + Y+ ++++ DI N+L+
Sbjct: 353 ALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVT 412
Query: 126 MYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
M+ KC ++ F +W MI G A +G KAL +F++M PD +
Sbjct: 413 MHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSIT 472
Query: 171 YVGVL 175
V +L
Sbjct: 473 IVSLL 477
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
++G M D+ +++S Y ++ +R+ FD M +RD V W +++ Y ++ E
Sbjct: 195 LYGFMS--DINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEV 252
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L L + ++ D T S+L+ A+ G L+LG + I + D +LI M
Sbjct: 253 LLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVM 312
Query: 127 YCK---CTVKFT------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y K + F WT MI GL +G+ DKAL +F QML+ +K
Sbjct: 313 YLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATM 372
Query: 172 VGVLSA 177
V++A
Sbjct: 373 ASVITA 378
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++++ Y D+AR+ FD MPER+ V WT++I Y R R EA +LF E++ I
Sbjct: 108 SSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQ 167
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKF---- 134
T++S+L + L ++ + +DI N+++ MY KC +++
Sbjct: 168 PSSVTMLSLLFGVSELAHVQC---LHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKL 224
Query: 135 ----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W +++ A G + L + M +PD + VLS
Sbjct: 225 FDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLS 276
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y +DIA++CF+QMP D V W+ +I GY + AL + + S +
Sbjct: 509 TSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMK 568
Query: 80 GDEFTIVSILTARANLGALELG 101
+ +S+L++ ++ G +E G
Sbjct: 569 PNHVIFLSVLSSCSHNGLVEQG 590
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 101/184 (54%), Gaps = 16/184 (8%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ DV+ A+V+ Y V+ A + F++MP+++ V W +I GY + EAL LF
Sbjct: 354 ESNDVVG-NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC- 130
E+Q I D F IVS+L A A+ ALE G+ I Y ++ ++++ G L+D+Y KC
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCG 472
Query: 131 ---TVK-----------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
T + +WTTMI+ I G+G+ AL +FS+M K D +A+ +L+
Sbjct: 473 NVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532
Query: 177 ARTH 180
A +H
Sbjct: 533 ACSH 536
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DVI TA+ S Y ++ ARQ FD+MP+RD V W +I GY + + EAL LF E+Q
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134
+ I + T+VS++ A+L ALE G+ I Y ++ +++D+ N L++MY KC
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273
Query: 135 T---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T W +I G +++ +AL F++M IKP+ + V VL A
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333
Query: 180 H 180
H
Sbjct: 334 H 334
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+ +V+ Y V+ A + F++MP RD W +I GY ++ EAL F +Q
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
I + T+VS+L A A+L ALE G+ I Y ++ +++ GNAL++MY KC
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN 374
Query: 131 -TVKF----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
K W +I G + G+ +AL +F +M IKPD A V VL A
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACA 434
Query: 180 H 180
H
Sbjct: 435 H 435
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 20 TAIVSGYINREQVDIARQ---CFDQMP------ERDYVLWTTMIDGYLRVNRFREALTLF 70
T+ V + R +V R+ C +Q + V+W I GY++ + +AL L+
Sbjct: 49 TSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLY 108
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++Q + I D+ +S++ A + L+ G + I ++D+ G AL MY KC
Sbjct: 109 YQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC 168
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
+W +I G + +G +AL +FS+M IKP+ V V+
Sbjct: 169 GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228
Query: 176 SARTH 180
H
Sbjct: 229 PVCAH 233
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V+ T +V Y V+ A++ F++MPE+D V WTTMI Y +AL LF ++Q
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQ 516
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ D +ILTA ++ G ++ G
Sbjct: 517 ETGTKLDHIAFTAILTACSHAGLVDQG 543
>gi|48427660|gb|AAT42379.1| At1g09220 [Arabidopsis thaliana]
Length = 338
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ +++G N + A ++MP R V WTT+IDGY RV++ +E
Sbjct: 13 KVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKE 72
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNAL 123
A+ LF + I +E TI++IL A NLG L++ + Y+ K V DI N+L
Sbjct: 73 AILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSL 132
Query: 124 IDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ID Y KC KF +WTTMI AI G G +A+ MF M R +KP
Sbjct: 133 IDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKP 192
Query: 167 DEVAYVGVLSARTH 180
+ V + VL+A +H
Sbjct: 193 NRVTMISVLNACSH 206
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D+ +++ Y + A + F ++P ++ V WTTMI + +EA+++F++
Sbjct: 125 DIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKD 184
Query: 73 IQTSNIMGDEFTIVSILTA--RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++ + + T++S+L A L E E+ T +++ K+ D+ L+DM
Sbjct: 185 MERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 240
>gi|341606381|gb|AEK83293.1| At3g62890-like protein [Capsella grandiflora]
gi|341606415|gb|AEK83310.1| At3g62890-like protein [Capsella grandiflora]
gi|341606445|gb|AEK83325.1| At3g62890-like protein [Capsella grandiflora]
gi|341606447|gb|AEK83326.1| At3g62890-like protein [Capsella grandiflora]
gi|341606453|gb|AEK83329.1| At3g62890-like protein [Capsella grandiflora]
gi|341606461|gb|AEK83333.1| At3g62890-like protein [Capsella grandiflora]
gi|341606475|gb|AEK83340.1| At3g62890-like protein [Capsella grandiflora]
gi|341606499|gb|AEK83352.1| At3g62890-like protein [Capsella grandiflora]
gi|341606517|gb|AEK83361.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D+ +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|224578205|gb|ACN57776.1| At3g62890-like protein [Capsella grandiflora]
Length = 152
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 2 VFDESVSKDLPAWNSVVBSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 61
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 62 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 121
Query: 122 ALIDMYCKC 130
ALIDMY KC
Sbjct: 122 ALIDMYAKC 130
>gi|399107022|gb|AFP20299.1| At3g62890-like protein, partial [Capsella grandiflora]
Length = 183
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 98/171 (57%), Gaps = 21/171 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY +++EA
Sbjct: 13 VFDESVSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEA 72
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + ++FT+ ++L+A LGALE G+W+ YIDK++V+ DI G
Sbjct: 73 LDLFREMQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGT 132
Query: 122 ALIDMYCKC------TVKFT----------WTTMIVGLAISGNGDKALDMF 156
ALIDMY KC FT ++ MI LA+ G D +F
Sbjct: 133 ALIDMYAKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDDCFQLF 183
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV+S+T +V G + D AR FD MPER+ V W M+ GY++ RF +AL +F E++
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK- 133
+ G+ F + + A GAL G + +++++ ++ D A++DMYCKC
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283
Query: 134 ----------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW MI G A+ G G+ AL +F +M R + PD+V V VL+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343
Query: 178 RTH 180
H
Sbjct: 344 CAH 346
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 20 TAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
TA+V Y V+ A + F+ +P + W MI G+ R +AL LF ++
Sbjct: 270 TAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREG 329
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYI 108
+ D+ T+V++LTA A+ G L G Y+
Sbjct: 330 VAPDDVTLVNVLTACAHAGMLSEGRHYFNYV 360
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 18/177 (10%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75
VIS T + Y R V++AR F++M + + +LW MI GY EA+ LF+E+ T
Sbjct: 224 VISLTTM---YAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 280
Query: 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF- 134
NI D T+ S + A A +G+LEL W+ YI K++ ++D F LIDMY KC +
Sbjct: 281 KNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYL 340
Query: 135 --------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W+ MI+G + G+G +A+ ++++M +A + P++ ++G+L+A
Sbjct: 341 ARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTA 397
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ A + F ++ E D +LW +I GY + N + ++ ++Q S + + FT + +L A
Sbjct: 35 VNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKA 94
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK------CTVKF---------TW 136
+G+ I K +++F N+L+ MY K + F +W
Sbjct: 95 CGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSW 154
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
T++I G +G+ +AL++F +M + ++KPD +A V V++A T
Sbjct: 155 TSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYT 197
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
+V ++VS Y Q+ AR FD++ +R V WT++I GY++ EAL +F+E++
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---- 130
N+ D +VS++TA N+ L G+ I + K ++ + +L MY K
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238
Query: 131 TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
+F W MI G A +G G++A+ +F +M+ +I+ D +
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSI 288
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D T ++ Y + +AR FD++ ++D VLW+ MI GY +EA+ L+ E++
Sbjct: 321 DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK 380
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + ++ T + +LTA N G ++ G
Sbjct: 381 QAGVCPNDGTFIGLLTACKNSGLVKEG 407
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 102/180 (56%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N DV + T+++S Y +++ A + FD++P+R V WT + GY R REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + D + IV +L+A ++G L+ GEWI Y+++ +++ + F L+++Y KC
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW+TMI G A + + +++F QML+ ++KPD+ + VG LS+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
K+ T +V+ Y +++ AR FD M E+D V W+TMI GY + +E + LF +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N+ D+F+IV L++ A+LGAL+LGEW + ID+++ ++F NALIDMY KC
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGA 363
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GLA +G+ + +F Q + I PD ++G+L
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423
Query: 178 RTH 180
H
Sbjct: 424 CVH 426
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 41 QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100
Q P + L+ ++I+G++ + F E L LF I+ + FT +L A + +L
Sbjct: 72 QFP--NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKL 129
Query: 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAI 145
G + + + K +D+ A +L+ +Y TWT + G
Sbjct: 130 GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTT 189
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
SG +A+D+F +M+ +KPD V VLSA H
Sbjct: 190 SGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 17/178 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ + + AR+ FD++P+ D V W +++GY+R E L +F+E+ I
Sbjct: 156 TGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIE 215
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCTV------ 132
DEF++ + LTA A +GAL G+WI ++ K + +++D+F G AL+DMY KC
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
F+W +I G A G KA ++ R IKPD V +GVL+A H
Sbjct: 276 VFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAH 333
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F+++ R+ W +I GY ++A T I+
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIE 312
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCK 129
+ I D ++ +L A A+ G LE G +T ++ + + I + ++D+ C+
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG---RTMLENMEARYGITPKHEHYSCIVDLMCR 369
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D ALD+ +M +KP + +L+ RTH
Sbjct: 370 ----------------AGRLDDALDLIEKM---PMKPLASVWGALLNGCRTHK 403
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 18/164 (10%)
Query: 35 ARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
A + FD++P ER+ V W ++++G+ R E LT+F+E+ D FT+VS+LTA
Sbjct: 176 AHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTAC 235
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------------TVKFTW 136
A +G L LG + ++ K + + AGNALID+Y KC +W
Sbjct: 236 AEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSW 295
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
T++IVGLA++G G AL +FS M R + P E+ VGVL A +H
Sbjct: 296 TSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSH 339
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,649,996,536
Number of Sequences: 23463169
Number of extensions: 97684707
Number of successful extensions: 366804
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6371
Number of HSP's successfully gapped in prelim test: 2828
Number of HSP's that attempted gapping in prelim test: 286976
Number of HSP's gapped (non-prelim): 47503
length of query: 181
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 48
effective length of database: 9,238,593,890
effective search space: 443452506720
effective search space used: 443452506720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 72 (32.3 bits)