BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038237
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 139/196 (70%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M + IF +MK +DVIS+T+IV GY+ R + +AR FDQMP RD + WT MIDGYLR
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
F E+L +F+E+Q++ ++ DEFT+VS+LTA A+LG+LE+GEWIKTYIDKNK+KND+ G
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALIDMY KC KFTWT M+VGLA +G G +A+ +F QM SI+
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 166 PDEVAYVGVLSARTHN 181
PD++ Y+GVLSA H+
Sbjct: 467 PDDITYLGVLSACNHS 482
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 46/206 (22%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V Y +D+AR FD+ + D W MI GY R+ + E++ L E++ + +
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-------- 132
T++ +L+A + + +L + + Y+ + K + + NAL++ Y C
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIF 294
Query: 133 --------------------------------------KFTWTTMIVGLAISGNGDKALD 154
+ +WT MI G +G +++L+
Sbjct: 295 RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLE 354
Query: 155 MFSQMLRASIKPDEVAYVGVLSARTH 180
+F +M A + PDE V VL+A H
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAH 380
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
V A + F ++PE D V+W MI G+ +V+ E + L+ + + D T +L
Sbjct: 83 HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142
Query: 91 A-RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
+ + GAL G+ + ++ K + ++++ NAL+ MY C + F
Sbjct: 143 GLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVF 202
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G ++++++ +M R + P V + VLSA
Sbjct: 203 SWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSA 245
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 12 KNK---DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
KNK DV+ A++ Y + A++ F M +RD WT M+ G + +EA+
Sbjct: 396 KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
+F ++Q +I D+ T + +L+A + G ++ K + K+++D +L+ C
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVDQAR--KFFA---KMRSDHRIEPSLVHYGC 510
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
M+ L +G +A ++ +M + P+ + + +L A R HN
Sbjct: 511 ----------MVDMLGRAGLVKEAYEILRKM---PMNPNSIVWGALLGASRLHN 551
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 119/189 (62%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +M++K+V +T++V GY++ ++D AR F++ P +D VLWT M++GY++ NRF EA
Sbjct: 204 VFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEA 263
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF+ +QT+ I D F +VS+LT A GALE G+WI YI++N+V D G AL+DM
Sbjct: 264 LELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDM 323
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC +WT++I GLA++G +ALD++ +M ++ D + +
Sbjct: 324 YAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITF 383
Query: 172 VGVLSARTH 180
V VL+A H
Sbjct: 384 VAVLTACNH 392
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 50/200 (25%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFT 84
Y + +++I + FD+MP+RD V W +I Y+ RF +A+ +F+ + Q SN+ DE T
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGT 150
Query: 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------- 130
IVS L+A + L LE+GE I ++ + + + GNAL+DM+CKC
Sbjct: 151 IVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMR 209
Query: 131 --TVKFTWTTMIVGLAISG------------------------NG-------DKALDMFS 157
VK WT+M+ G +G NG D+AL++F
Sbjct: 210 DKNVK-CWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFR 268
Query: 158 QMLRASIKPDEVAYVGVLSA 177
M A I+PD V +L+
Sbjct: 269 CMQTAGIRPDNFVLVSLLTG 288
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTY 107
+++ M+ F + L LF E++ + D FT+ +L + L + GE + Y
Sbjct: 12 LMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGY 71
Query: 108 IDKNKVKNDIFAGNALIDMYC-----KCTVK----------FTWTTMIVGLAISGNGDKA 152
K ++ D + N+L+ MY + T K +W +I +G + A
Sbjct: 72 AVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDA 131
Query: 153 LDMFSQMLRAS-IKPDEVAYVGVLSA 177
+ +F +M + S +K DE V LSA
Sbjct: 132 IGVFKRMSQESNLKFDEGTIVSTLSA 157
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 115/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF ++ + ++S+T ++SGY +D++R+ FD M E+D VLW MI G ++ R ++A
Sbjct: 314 IFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDA 373
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LFQE+QTSN DE T++ L+A + LGAL++G WI YI+K + ++ G +L+DM
Sbjct: 374 LALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
Y KC T+T +I GLA+ G+ A+ F++M+ A I PDE+ +
Sbjct: 434 YAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITF 493
Query: 172 VGVLSARTH 180
+G+LSA H
Sbjct: 494 IGLLSACCH 502
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR+ FD+ P RD V W +I+GY ++ +A+ +++ +++ + D+ T++ ++++ +
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
LG L G+ Y+ +N ++ I NAL+DM+ KC +WTTM
Sbjct: 270 LGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTM 329
Query: 140 IVGLAISG-------------------------------NGDKALDMFSQMLRASIKPDE 168
I G A G G AL +F +M ++ KPDE
Sbjct: 330 ISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDE 389
Query: 169 VAYVGVLSA 177
+ + LSA
Sbjct: 390 ITMIHCLSA 398
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIM---GDEFTIVSILTARANLGALELGEWIKT 106
W I G+ +E+ L++++ D FT + A+L LG I
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 107 YIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTWTTMIVGLAISGNGDK 151
++ K +++ NA I M+ C V+ +W +I G G +K
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 152 ALDMFSQMLRASIKPDEVAYVGVLSA 177
A+ ++ M +KPD+V +G++S+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSS 266
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T++V Y + A F + R+ + +T +I G A++ F E+ + I
Sbjct: 428 TSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 487
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L+A + G ++ G
Sbjct: 488 PDEITFIGLLSACCHGGMIQTG 509
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF M DV+++ +++ G+ +D A+ FD+MP+R+ V W +MI G++R RF++A
Sbjct: 183 IFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDA 242
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L +F+E+Q ++ D FT+VS+L A A LGA E G WI YI +N+ + + ALIDM
Sbjct: 243 LDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDM 302
Query: 127 YCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YCKC W +MI+GLA +G ++A+D+FS++ R+ ++PD V++
Sbjct: 303 YCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSF 362
Query: 172 VGVLSARTHN 181
+GVL+A H+
Sbjct: 363 IGVLTACAHS 372
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQT 75
I TA++ Y ++ F+ P++ W +MI G L N F E A+ LF E++
Sbjct: 294 IVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG-LANNGFEERAMDLFSELER 352
Query: 76 SNIMGDEFTIVSILTARANLGALE 99
S + D + + +LTA A+ G +
Sbjct: 353 SGLEPDSVSFIGVLTACAHSGEVH 376
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M++K+ +++ ++ GY+ QVD A + FD+MPERD + WT MI+G+++ EA
Sbjct: 131 VFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEA 190
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L F+E+Q S + D I++ L A NLGAL G W+ Y+ KN++ N+LID+
Sbjct: 191 LLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDL 250
Query: 127 YCKC-TVKF--------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
YC+C V+F +W ++IVG A +GN ++L F +M KPD V +
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 172 VGVLSARTH 180
G L+A +H
Sbjct: 311 TGALTACSH 319
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76
I+ A+++ + N I R +Q V WT+ I+ R R EA F ++ +
Sbjct: 9 ITSPALIT-HKNHANPKIQRH--NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLA 65
Query: 77 NIMGDEFTIVSILTARANL--GALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCK---- 129
+ + T +++L+ + G+ LG+ + Y K + +N + G A+I MY K
Sbjct: 66 GVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRF 125
Query: 130 --CTVKF---------TWTTMIVGLAISGNGDKALDMFSQM 159
+ F TW TMI G SG D A MF +M
Sbjct: 126 KKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKM 166
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
V+ ARQ F M +R V W ++I G+ E+L F+++Q D T LTA
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316
Query: 92 RANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150
+++G +E G + + ++ I L+D+Y + +G +
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSR----------------AGRLE 360
Query: 151 KALDMFSQMLRASIKPDEVAYVGVLSA 177
AL + M +KP+EV +L+A
Sbjct: 361 DALKLVQSM---PMKPNEVVIGSLLAA 384
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S+T ++ G ++ Q+D A F+QMP R+ V WT MI Y++ R E
Sbjct: 175 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDE 234
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF+ +Q ++ +EFTIV++L A LG+L +G W+ Y KN D F G ALID
Sbjct: 235 AFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALID 294
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEV 169
MY KC TW +MI L + G G++AL +F AS++PD +
Sbjct: 295 MYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAI 354
Query: 170 AYVGVLSA 177
+VGVLSA
Sbjct: 355 TFVGVLSA 362
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSIL 89
+ A F+Q+ W MI ++ REAL LF + S+ D+FT ++
Sbjct: 67 ETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVI 126
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------F 134
A ++ LG + K ND+F N L+D+Y KC
Sbjct: 127 KACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIV 186
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+WTTM+ GL + D A +F+QM ++ V++ +++A N
Sbjct: 187 SWTTMLYGLVSNSQLDSAEIVFNQMPMRNV----VSWTAMITAYVKN 229
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 114/189 (60%), Gaps = 15/189 (7%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IFG M +DV+S+T++V+GY V+ AR+ FD+MP R+ W+ MI+GY + N F +A
Sbjct: 174 IFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKA 233
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
+ LF+ ++ ++ +E +VS++++ A+LGALE GE Y+ K+ + ++ G AL+DM
Sbjct: 234 IDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDM 293
Query: 127 YCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171
+ +C T +W+++I GLA+ G+ KA+ FSQM+ P +V +
Sbjct: 294 FWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTF 353
Query: 172 VGVLSARTH 180
VLSA +H
Sbjct: 354 TAVLSACSH 362
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 46/188 (24%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F Q+ + ++ +I + +A + ++ S I D T ++ A + + +
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 99 ELGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 127
+GE + I + +ND++ N+L+ M Y
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193
Query: 128 CKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172
CKC + FTW+ MI G A + +KA+D+F M R + +E V
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253
Query: 173 GVLSARTH 180
V+S+ H
Sbjct: 254 SVISSCAH 261
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
++I TA+V + ++ A F+ +PE D + W+++I G +A+ F ++
Sbjct: 283 NLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMI 342
Query: 75 TSNIMGDEFTIVSILTARANLGALELG 101
+ + + T ++L+A ++ G +E G
Sbjct: 343 SLGFIPRDVTFTAVLSACSHGGLVEKG 369
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 136 bits (343), Expect = 6e-32, Method: Composition-based stats.
Identities = 70/190 (36%), Positives = 112/190 (58%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ KD +++T ++ GY E + AR+ + MP++D V W +I Y + + EA
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F E+Q N+ ++ T+VS L+A A +GALELG WI +YI K+ ++ + +ALI
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIH 408
Query: 126 MYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +V+ F W+ MI GLA+ G G++A+DMF +M A++KP+ V
Sbjct: 409 MYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVT 468
Query: 171 YVGVLSARTH 180
+ V A +H
Sbjct: 469 FTNVFCACSH 478
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 19/182 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++ Y + +D A + F + E+D V W +MI+G+++ +AL LF++++
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
+ ++ T+V +L+A A + LE G + +YI++N+V ++ NA++DMY KC
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
TWTTM+ G AIS + + A ++ + M + I VA+ ++SA
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI----VAWNALISAYE 340
Query: 180 HN 181
N
Sbjct: 341 QN 342
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLR-VNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
++ AR+ FD++P+ + W T+I Y + + S +++T ++
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----------TVK----FT 135
A A + +L LG+ + K+ V +D+F N+LI Y C T+K +
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
W +MI G G+ DKAL++F +M +K V VGVLSA
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 241
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 48/92 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ +R+ F+ + +RD +W+ MI G EA+ +F ++Q +N+
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKN 111
+ T ++ A ++ G ++ E + ++ N
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 17/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +K VI++T ++ GY N + +D AR+ FD MPER+ V W TMI GY + + +E
Sbjct: 198 LFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEG 257
Query: 67 LTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ LFQE+Q T+++ D+ TI+S+L A ++ GAL LGEW ++ + K+ + A++D
Sbjct: 258 IRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILD 317
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W MI G A++GN ALD+F M+ KPDE+
Sbjct: 318 MYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEIT 376
Query: 171 YVGVLSARTH 180
+ V++A H
Sbjct: 377 MLAVITACNH 386
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLR 59
MG F M ++ +S+TA++SGYI ++D+A + FDQMP +D V++ M+DG+++
Sbjct: 129 MGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVK 188
Query: 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
A LF E+ ++ T +++ N+ DI A
Sbjct: 189 SGDMTSARRLFDEMTHKTVI----TWTTMIHGYCNI-------------------KDIDA 225
Query: 120 GNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 177
L D + + +W TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 226 ARKLFDAMPERNL-VSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 16 VISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
VIS +A+ GY AR+ FDQ P+R D L +MI YL ++ ++ L+++++
Sbjct: 18 VISASAVGIGY--------ARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLR 69
Query: 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---- 129
D FT ++ + + + G + + I + D++ ++DMY K
Sbjct: 70 KETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKM 129
Query: 130 -CT----------VKFTWTTMIVGLAISGNGDKALDMFSQM 159
C + +WT +I G G D A +F QM
Sbjct: 130 GCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +DVIS+ +++SGY Q+ A+ F M ++ V WT MI GY + + E
Sbjct: 165 KVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVE 224
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A+ F+E+Q + I DE +++S+L + A LG+LELG+WI Y ++ NALI+
Sbjct: 225 AMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIE 284
Query: 126 MYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC V +W+TMI G A GN A++ F++M RA +KP+ +
Sbjct: 285 MYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGIT 344
Query: 171 YVGVLSARTH 180
++G+LSA +H
Sbjct: 345 FLGLLSACSH 354
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 81/195 (41%), Gaps = 47/195 (24%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSI 88
E +D A + F+Q+ + L+ ++I Y + + + + +++++ + S + D FT +
Sbjct: 56 EDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFM 115
Query: 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------------ 130
+ A+LG+ LG+ + ++ K + + NALIDMY K
Sbjct: 116 FKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV 175
Query: 131 ----------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162
+WT MI G G +A+D F +M A
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235
Query: 163 SIKPDEVAYVGVLSA 177
I+PDE++ + VL +
Sbjct: 236 GIEPDEISLISVLPS 250
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A Q F QM +D + W+TMI GY A+ F E+Q + +
Sbjct: 281 ALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKP 340
Query: 81 DEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTM 139
+ T + +L+A +++G + G + +++ I LID+
Sbjct: 341 NGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDV------------- 387
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
LA +G ++A+++ M +KPD + +LS+
Sbjct: 388 ---LARAGKLERAVEITKTM---PMKPDSKIWGSLLSS 419
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQM 42
+++FG M+ KDVIS++ ++SGY A + F++M
Sbjct: 295 AIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
+G ++F M KDV + A+++GY ++D AR + MP R+ V WT +I GY
Sbjct: 167 LGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYA 226
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+ R EA+ +FQ + N+ DE T++++L+A A+LG+LELGE I +Y+D + +
Sbjct: 227 KSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS 286
Query: 119 AGNALIDMYCK------------CTVK---FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NA+IDMY K C + TWTT+I GLA G+G +AL MF++M++A
Sbjct: 287 LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG 346
Query: 164 IKPDEVAYVGVLSARTH 180
++P++V ++ +LSA +H
Sbjct: 347 VRPNDVTFIAILSACSH 363
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N+ V A++ Y + A F+ + ER+ V WTT+I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNR 341
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGE 102
+ + + ++ T ++IL+A +++G ++LG+
Sbjct: 342 MVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 134 bits (337), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 110/187 (58%), Gaps = 17/187 (9%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F + D +S+ +++ GY+ ++DIA F +M E++ + WTTMI GY++ + +EA
Sbjct: 172 LFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEA 231
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
L LF E+Q S++ D ++ + L+A A LGALE G+WI +Y++K +++ D G LIDM
Sbjct: 232 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDM 291
Query: 127 YCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
Y KC +V+ WT +I G A G+G +A+ F +M + IKP+ +
Sbjct: 292 YAKCGEMEEALEVFKNIKKKSVQ-AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT 350
Query: 171 YVGVLSA 177
+ VL+A
Sbjct: 351 FTAVLTA 357
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 46/189 (24%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A+ FD D LW MI G+ + +L L+Q + S+ + +T S+L A +N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-------------------------- 128
L A E I I K +ND++A N+LI+ Y
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 129 -KCTVK-------------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
K VK +WTTMI G + +AL +F +M + ++PD
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 169 VAYVGVLSA 177
V+ LSA
Sbjct: 248 VSLANALSA 256
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D + ++ Y +++ A + F + ++ WT +I GY REA++ F E+Q
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVK 133
I + T ++LTA + G +E G+ I ++++ +K I ++D+
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDL------- 393
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
L +G D+A +M +KP+ V + +L A R H
Sbjct: 394 ---------LGRAGLLDEAKRFIQEM---PLKPNAVIWGALLKACRIHK 430
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 114/197 (57%), Gaps = 24/197 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F +KD+ ++ ++V+ Y +D AR+ FD+MPER+ + W+ +I+GY+ +++EA
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178
Query: 67 LTLFQEIQTSN-----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121
L LF+E+Q + +EFT+ ++L+A LGALE G+W+ YIDK V+ DI G
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238
Query: 122 ALIDMYCKC-----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA-S 163
ALIDMY KC VK ++ MI LA+ G D+ +FS+M + +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVK-AYSAMICCLAMYGLTDECFQLFSEMTTSDN 297
Query: 164 IKPDEVAYVGVLSARTH 180
I P+ V +VG+L A H
Sbjct: 298 INPNSVTFVGILGACVH 314
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 16/190 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M+ ++V S+ ++SGY V A++ FD MP RD V W M+ Y V + E
Sbjct: 228 LFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 67 LTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F + + S D FT+VS+L+A A+LG+L GEW+ YIDK+ ++ + F AL+D
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVD 347
Query: 126 MYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC T K TW ++I L++ G G AL++FS+M+ KP+ +
Sbjct: 348 MYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGIT 407
Query: 171 YVGVLSARTH 180
++GVLSA H
Sbjct: 408 FIGVLSACNH 417
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111
++I Y + ALT+F+E+ + D+++ +L A A E G I K+
Sbjct: 110 SVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKS 169
Query: 112 KVKNDIFAGNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMF 156
+ D+F N L+++Y + +W +++ G D+A +F
Sbjct: 170 GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALF 229
Query: 157 SQM 159
+M
Sbjct: 230 DEM 232
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L++F +DV++Y ++ G + ++ AR+ FD MP RD V W ++I GY ++N
Sbjct: 171 ALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHC 230
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
REA+ LF E+ + D IVS L+A A G + G+ I Y + ++ D F L
Sbjct: 231 REAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGL 290
Query: 124 IDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168
+D Y KC FTW MI GLA+ GNG+ +D F +M+ + IKPD
Sbjct: 291 VDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDG 350
Query: 169 VAYVGVLSARTHN 181
V ++ VL +H+
Sbjct: 351 VTFISVLVGCSHS 363
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 15/184 (8%)
Query: 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQ 71
++ +++ + ++ GY+ AR FD+M +R V W TMI GY F++A+ +F+
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
E++ +I + T+VS+L A + LG+LELGEW+ Y + + ++ D G+ALIDMY KC
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 132 V---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+ TW+ MI G AI G A+D F +M +A ++P +VAY+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 177 ARTH 180
A +H
Sbjct: 384 ACSH 387
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 10 TMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE--AL 67
T+ +++ + A + ++ +D A + F+QMP+R+ W T+I G+ + + A+
Sbjct: 55 TLAAAEILRFCA--TSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAI 112
Query: 68 TLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
TLF E+ + + + FT S+L A A G ++ G+ I K D F + L+ M
Sbjct: 113 TLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRM 172
Query: 127 YCKC 130
Y C
Sbjct: 173 YVMC 176
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A++ Y ++ A F+++P + + W+ MI+G+ + +A+ F +++ + +
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+ +++LTA ++ G +E G + + + ++ I ++D+
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDL------------ 420
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L SG D+A + +L IKPD+V + +L A
Sbjct: 421 ----LGRSGLLDEAEEF---ILNMPIKPDDVIWKALLGA 452
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 11 MKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLF 70
M K+ + +++GY+ ++ A F+QMP +D + WTTMI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
++ I+ DE T+ ++++A A+LG LE+G+ + Y +N D++ G+AL+DMY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 131 TV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175
F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 176 SARTH 180
+A TH
Sbjct: 396 TACTH 400
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y ++ A F +P+++ W ++I+G +EAL +F +++
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVK 133
++ + T VS+ TA + G ++ G I ++ ID + +++ ++ ++ K +
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLI 440
Query: 134 FTWTTMIVGLAISGNG 149
+ +I + N
Sbjct: 441 YEALELIGNMEFEPNA 456
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 115/193 (59%), Gaps = 16/193 (8%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
IF M NK V+++ +IV+GY+ +VD A + F+ MPE++ V W T+I G ++ + F
Sbjct: 391 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 450
Query: 64 REALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122
EA+ +F +Q+ + D T++SI +A +LGAL+L +WI YI+KN ++ D+ G
Sbjct: 451 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 510
Query: 123 LIDMYCKCTVKFT---------------WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
L+DM+ +C + WT I +A++GN ++A+++F M+ +KPD
Sbjct: 511 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570
Query: 168 EVAYVGVLSARTH 180
VA+VG L+A +H
Sbjct: 571 GVAFVGALTACSH 583
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL-FQE 72
KD+ ++V Y ++D AR+ FD+M ER+ V WT+MI GY R + ++A+ L F+
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
++ + + T+V +++A A L LE GE + +I + ++ + +AL+DMY KC
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 133 ---------KFTWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y+ +D+A++ FD+ + L M Y+R REAL +F + S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVK------ 133
D +++S +++ + L + G+ Y+ +N ++ NALIDMY KC +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 134 ---------FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
TW +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 29 REQVDIARQCFDQMPERDYV-LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87
RE + A++ F+ ++ ++I GY EA+ LF + S I D++T
Sbjct: 80 RESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF 139
Query: 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------------- 132
L+A A A G I I K D+F N+L+ Y +C
Sbjct: 140 GLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERN 199
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 177
+WT+MI G A A+D+F +M+R + P+ V V V+SA
Sbjct: 200 VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISA 245
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 124 bits (312), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/178 (36%), Positives = 102/178 (57%), Gaps = 17/178 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y +++ A F+++P +D + W T+I GY +N ++EAL LFQE+ S
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKC-------- 130
++ T++SIL A A+LGA+++G WI YIDK V N +LIDMY KC
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 131 -------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W MI G A+ G D + D+FS+M + I+PD++ +VG+LSA +H+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 123 bits (309), Expect = 5e-28, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++DV+SYTA++ GY +R ++ A++ FD++P +D V W MI GY ++E
Sbjct: 190 KVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 249
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+++ +N+ DE T+V++++A A G++ELG + +ID + +++ NALID
Sbjct: 250 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALID 309
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +W T+I G +AL +F +MLR+ P++V
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 171 YVGVLSARTH 180
+ +L A H
Sbjct: 370 MLSILPACAH 379
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89
E + A F + E + ++W TM G+ + AL L+ + + ++ + +T +L
Sbjct: 82 EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141
Query: 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-----------------KCTV 132
+ A A + G+ I ++ K D++ +LI MY + V
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201
Query: 133 KFT-----------------------------WTTMIVGLAISGNGDKALDMFSQMLRAS 163
+T W MI G A +GN +AL++F M++ +
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261
Query: 164 IKPDEVAYVGVLSA 177
++PDE V V+SA
Sbjct: 262 VRPDESTMVTVVSA 275
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 112/196 (57%), Gaps = 15/196 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E F M +++ TA+VSGY ++D A+ FDQ ++D V WTTMI Y+
Sbjct: 263 MDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVES 322
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ +EAL +F+E+ S I D ++ S+++A ANLG L+ +W+ + I N +++++
Sbjct: 323 DYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSIN 382
Query: 121 NALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NALI+MY KC +W++MI L++ G AL +F++M + +++
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 166 PDEVAYVGVLSARTHN 181
P+EV +VGVL +H+
Sbjct: 443 PNEVTFVGVLYGCSHS 458
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D T + Y + +++ AR FD+M RD V W TMI+ Y R EA LF+E++
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND---------IFAGNALID 125
SN+M DE + +I++A G + I ++ +N V+ D ++AG +D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 126 M----------------------YCKC------TVKF---------TWTTMIVGLAISGN 148
M Y KC V F WTTMI S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 149 GDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+AL +F +M + IKPD V+ V+SA
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y +D R F++MP R+ V W++MI+ +AL+LF ++ N+
Sbjct: 383 NALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVE 442
Query: 80 GDEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
+E T V +L ++ G +E G+ I + D+ + + ++D++ + +
Sbjct: 443 PNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALE 502
Query: 139 MIVGLAISGN 148
+I + ++ N
Sbjct: 503 VIESMPVASN 512
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
+F M +DV + A+++GY R + A + FD MP ++ WTT+I G+ + + EA
Sbjct: 139 VFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEA 198
Query: 67 LTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
L +F ++ ++ + T+VS+L A ANLG LE+G ++ Y +N ++I+ NA I+
Sbjct: 199 LKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIE 258
Query: 126 MYCKCTV----------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY KC + +W +MI LA G D+AL +F+QMLR KPD V
Sbjct: 259 MYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAV 318
Query: 170 AYVGVLSARTH 180
+VG+L A H
Sbjct: 319 TFVGLLLACVH 329
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV---------- 113
R L + S D F +++TA A LGAL + + K V
Sbjct: 99 RPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGY 158
Query: 114 --KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 170
+ D+ A L D + V +WTT+I G + +GN +AL MF M + S+KP+ +
Sbjct: 159 QRRGDMKAAMELFDSMPRKNVT-SWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHIT 217
Query: 171 YVGVLSA 177
V VL A
Sbjct: 218 VVSVLPA 224
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 21/159 (13%)
Query: 21 AIVSGYINREQVDIARQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A + Y +D+A++ F+++ +R+ W +MI + EALTLF ++
Sbjct: 255 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 314
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138
D T V +L A + G + G E K+ + +K+ + +ID+
Sbjct: 315 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 362
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L G +A D+ M +KPD V + +L A
Sbjct: 363 ----LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGA 394
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 15/185 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F ++ D + TA+V+ V AR+ F+ MPERD + W MI GY +V RE
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL +F +Q + + ++S+L+A LGAL+ G W +YI++NK+K + L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
+Y KC +TW++ + GLA++G G+K L++FS M + + P+ V
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 171 YVGVL 175
+V VL
Sbjct: 344 FVSVL 348
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE-ALTLFQEIQTSNI 78
T +V Y ++ A + F M E++ W++ ++G L +N F E L LF ++ +
Sbjct: 279 TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG-LAMNGFGEKCLELFSLMKQDGV 337
Query: 79 MGDEFTIVSILTARANLGALELGE-WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWT 137
+ T VS+L + +G ++ G+ + ++ ++ + L+D+Y
Sbjct: 338 TPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLY---------- 387
Query: 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
A +G + A+ + QM +KP + +L A
Sbjct: 388 ------ARAGRLEDAVSIIQQM---PMKPHAAVWSSLLHA 418
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61
G F MK KD+ S+ +V G++ ++ A+ FDQMP+RD V W +++ GY +
Sbjct: 286 GLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKG 345
Query: 62 -RFREALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA 119
R LF E+ + D T+VS+++ AN G L G W+ + + ++K D F
Sbjct: 346 CDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405
Query: 120 GNALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164
+ALIDMYCKC + WT+MI GLA GNG +AL +F +M +
Sbjct: 406 SSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGV 465
Query: 165 KPDEVAYVGVLSARTHN 181
P+ V + VL+A +H+
Sbjct: 466 TPNNVTLLAVLTACSHS 482
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
+ ++V Y+ +A + F +MP D + MI GY + EAL L+ ++ + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNALIDMYCKCTVK--- 133
DE+T++S+L +L + LG+ + +I++ +++ NAL+DMY KC
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 134 ------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+W TM+VG G+ + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D +A++ Y ++ A F E+D LWT+MI G ++AL LF +Q
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAGNALIDMYCKCTVK 133
+ + T++++LTA ++ G +E G + ++ DK + +L+D+ C+
Sbjct: 462 EEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCR---- 517
Query: 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G ++A D+ + + ++P + + +LSA
Sbjct: 518 ------------AGRVEEAKDIVQK--KMPMRPSQSMWGSILSA 547
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 30 EQVDIARQCF-DQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88
E +D+A+ F + P + ++ TMI + E L+ + + D T + +
Sbjct: 82 ENLDLAKLLFLNFTPNPNVFVYNTMISAV--SSSKNECFGLYSSMIRHRVSPDRQTFLYL 139
Query: 89 LTARANL-------------GALELGEW-----IKTYIDKNK--VKNDIFAGNALIDMYC 128
+ A + L G L LG + +K Y++ V +FA D+
Sbjct: 140 MKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVS- 198
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
++ MIVG A G +AL ++ +M+ I+PDE + +L H
Sbjct: 199 ------SFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGH 244
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++D ++ T +++ Y + A + F + +D V WT MIDG +R +
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL LF+E+Q N+ +EFT V +L+A ++LGALELG W+ ++++ +++ F GNALI+
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALIN 298
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY +C ++ TMI GLA+ G +A++ F M+ +P++V
Sbjct: 299 MYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVT 358
Query: 171 YVGVLSARTH 180
V +L+A +H
Sbjct: 359 LVALLNACSH 368
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
+I T ++D ++ + VD A F + + L+T MIDG++ R +
Sbjct: 51 KIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSAD 110
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTA-------RANLGALELG---------EWIKTYID 109
++L+ + ++++ D + I S+L A + L+LG + ++ Y
Sbjct: 111 GVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGK 170
Query: 110 KNKVKN-----------DIFAGNALIDMYCKC-------------TVKFT--WTTMIVGL 143
++ N D A +I+ Y +C +K T WT MI GL
Sbjct: 171 SGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGL 230
Query: 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ +KAL++F +M ++ +E V VLSA
Sbjct: 231 VRNKEMNKALELFREMQMENVSANEFTAVCVLSA 264
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A+++ Y ++ AR+ F M ++D + + TMI G EA+ F+++
Sbjct: 294 NALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFR 353
Query: 80 GDEFTIVSILTARANLGALELG 101
++ T+V++L A ++ G L++G
Sbjct: 354 PNQVTLVALLNACSHGGLLDIG 375
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF +M ++VI+ T+++SGY AR F +M ER+ V W +I GY + EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK------NDIFAG 120
L+LF ++ ++ ++ +IL A A+L L LG ++ K+ K +DIF G
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 121 NALIDMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
N+LIDMY KC +W MI+G A +G G++AL++F +ML + K
Sbjct: 431 NSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEK 490
Query: 166 PDEVAYVGVLSARTH 180
PD + +GVLSA H
Sbjct: 491 PDHITMIGVLSACGH 505
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 96/187 (51%), Gaps = 15/187 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +++ ++ ++V+G +D A F MPERD W +M+ G+ + +R E
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
AL F + + +E++ S+L+A + L + G + + I K+ +D++ G+AL+D
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195
Query: 126 MYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170
MY KC +W ++I +G +ALD+F ML + ++PDEV
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255
Query: 171 YVGVLSA 177
V+SA
Sbjct: 256 LASVISA 262
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 20/183 (10%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +A+V Y V+ A++ FD+M +R+ V W ++I + + EAL +FQ +
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCT-- 131
S + DE T+ S+++A A+L A+++G+ + + KN K++NDI NA +DMY KC+
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 132 --VKFTW-----------TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178
+F + T+MI G A++ + A MF++M ++ V++ +++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV----VSWNALIAGY 361
Query: 179 THN 181
T N
Sbjct: 362 TQN 364
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
F + + D+ +++ Y+ V+ F +M ERD V W MI G+ + EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
LF+E+ S D T++ +L+A + G +E G + + ++ F L D Y
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRD------FGVAPLRDHY 532
Query: 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
T M+ L +G ++A M +M ++PD V + +L+A
Sbjct: 533 ---------TCMVDLLGRAGFLEEAKSMIEEM---PMQPDSVIWGSLLAA 570
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISG 147
++ + K+ N+IF N LID Y KC +TW +++ GL G
Sbjct: 41 YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 148 NGDKALDMFSQM 159
D+A +F M
Sbjct: 101 FLDEADSLFRSM 112
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 21/198 (10%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
+ +F M KD +++ +++G + +++D AR+ FD+ E+D V W MI GY+
Sbjct: 197 AMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-DKNKVKNDIFAG-- 120
+EAL +F+E++ + D TI+S+L+A A LG LE G+ + YI + V + I+ G
Sbjct: 257 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316
Query: 121 --NALIDMYCKC-----------TVK----FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NALIDMY KC VK TW T+IVGLA+ + + +++MF +M R
Sbjct: 317 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 375
Query: 164 IKPDEVAYVGVLSARTHN 181
+ P+EV ++GV+ A +H+
Sbjct: 376 VWPNEVTFIGVILACSHS 393
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M +F +M ++ S++ ++ GY++ +++ A+Q F+ MPE++ V WTT+I+G+ +
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ A++ + E+ + +E+TI ++L+A + GAL G I YI N +K D G
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 121 NALIDMYCKC-------TV--------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
AL+DMY KC TV +WT MI G A+ G +A+ F QM+ + K
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 166 PDEVAYVGVLSA 177
PDEV ++ VL+A
Sbjct: 392 PDEVVFLAVLTA 403
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 9 GTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPER----DYVLWTTMIDGYLRVN 61
T+KN D ++V Y Q+ A Q F++ P+R ++W +I+GY R
Sbjct: 151 ATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAK 210
Query: 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW---IKTYIDKNKVKNDIF 118
A TLF+ + N G W IK Y+D ++
Sbjct: 211 DMHMATTLFRSMPERNS----------------------GSWSTLIKGYVDSGELNR--- 245
Query: 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
L ++ + V +WTT+I G + +G+ + A+ + +ML +KP+E VLSA
Sbjct: 246 -AKQLFELMPEKNV-VSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSA 302
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+V Y ++D A F M +D + WT MI G+ RF +A+ F+++ S
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 80 GDEFTIVSILTARANLGALELG 101
DE +++LTA N ++LG
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLG 413
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%)
Query: 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92
D + F ER+ + +I G RF ++ F + + D T +L +
Sbjct: 77 DYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSN 136
Query: 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129
+ LG LG + KN V D F +L+DMY K
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAK 173
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 118 bits (296), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREA 66
IF ++ K V+S+T ++ + E ++ R+ F +MPER+ V WT M+ GYL RE
Sbjct: 168 IFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREV 227
Query: 67 LTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNKVK-------NDIF 118
L L E+ G F T+ S+L+A A G L +G W+ Y K ++ +D+
Sbjct: 228 LELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVM 287
Query: 119 AGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
G AL+DMY KC TW + GLA+ G G +DMF QM+R
Sbjct: 288 VGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-E 346
Query: 164 IKPDEVAYVGVLSARTHN 181
+KPD++ + VLSA +H+
Sbjct: 347 VKPDDLTFTAVLSACSHS 364
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 21 AIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78
A+ Y + ++ A++ FD++P E+D V WTT++ + R ++ LF E++ +
Sbjct: 48 ALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV 107
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
D+ ++V + A L L + K V + NAL+DMY KC
Sbjct: 108 EIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKC 159
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA+ + Y +++ AR+ FD+ PE+ W MI GY + +A++LF+E+Q S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
+ TI IL+A A LGAL LG+W+ + ++ I+ ALI MY KC
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+ TW TMI G + G G +AL++F +ML + I P V ++ VL A +H
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE-IQTSNIMG 80
IV Y +V+ AR+ FD+MPE+D +LW TMI GY + + E++ +F++ I S
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140
D T++ IL A A L L LG I + K + + I +Y KC
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKC---------- 269
Query: 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+ M S + R KPD VAY ++ T N
Sbjct: 270 ----------GKIKMGSALFREFRKPDIVAYNAMIHGYTSN 300
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ Y + AR+ FD M +++ V W TMI GY + +EAL +F E+ S I
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKFTWTT 138
T + +L A ++ G ++ G ++IF N++I Y + +VK +
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEG-------------DEIF--NSMIHRYGFEPSVKH-YAC 562
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
M+ L +G+ +AL M SI+P + +L A R H
Sbjct: 563 MVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGACRIHK 603
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T +S Y ++ + F + + D V + MI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------- 131
T+VS++ G L L I Y K+ + AL +Y K
Sbjct: 320 LRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+W MI G +G + A+ +F +M ++ P+ V +LSA
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSA 429
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 15/181 (8%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV +++V Y D A++ FD+MP R+ V WT +I GY++ F + + +F+E+
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV-- 132
S++ +E T+ S+L+A A++GAL G + Y+ KN ++ + AG LID+Y KC
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 133 -------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179
+TWT MI G A G A D+F ML + + P+EV ++ VLSA
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 180 H 180
H
Sbjct: 419 H 419
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D +++SGY + D A + FD ++D V WT MIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIK-TYIDKNKVKNDIFAGNALIDMYCKCT 131
++ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY KC+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 132 VK---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
TWT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 177 ARTH 180
A H
Sbjct: 315 ACAH 318
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ ++ A F+++ E++ WT MI+G+ R+A LF + +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 80 GDEFTIVSILTARANLGALELG 101
+E T +++L+A A+ G +E G
Sbjct: 405 PNEVTFMAVLSACAHGGLVEEG 426
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 15/174 (8%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
+++ Y E VD AR FD++ E V + MI GY R NR EAL+LF+E+Q + +
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPN 229
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----------- 130
E T++S+L++ A LG+L+LG+WI Y K+ + ALIDM+ KC
Sbjct: 230 EITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFE 289
Query: 131 TVKF----TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+++ W+ MIV A G +K++ MF +M +++PDE+ ++G+L+A +H
Sbjct: 290 KMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSH 343
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
AR F+ M E D V++ +M GY R E +LF EI I+ D +T S+L A A
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTM 139
ALE G + K + ++++ LI+MY +C + M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 140 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I G A ++AL +F +M +KP+E+ + VLS+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSS 239
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TA++ + +D A F++M +D W+ MI Y + +++ +F+ +++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 80 GDEFTIVSILTARANLGALELG 101
DE T + +L A ++ G +E G
Sbjct: 329 PDEITFLGLLNACSHTGRVEEG 350
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 117 bits (293), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 47/223 (21%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M KD+IS+ +++ GY+ +++ A+ FD MP RD V W TMIDGY ++
Sbjct: 242 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 301
Query: 66 ALTLFQEI--------------------------------QTSNIMGDEFTIVSILTARA 93
A TLF ++ + S+++ D+ T+V +L A A
Sbjct: 302 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 361
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-TVKFT--------------WTT 138
LG L + YI + + G ALIDMY KC +++ W
Sbjct: 362 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 421
Query: 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
MI GLAI G G+ A DM Q+ R S+KPD++ +VGVL+A +H+
Sbjct: 422 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHS 464
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 26/170 (15%)
Query: 10 TMKNKDVISYTAIVSGYIN-REQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT 68
M+ K++IS+ +++SGY + VDIA + F MPE+D + W +MIDGY++ R +A
Sbjct: 214 PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKG 273
Query: 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128
LF + +++ T +++ A LG + KT D+ D+ A N+++ Y
Sbjct: 274 LFDVMPRRDVV----TWATMIDGYAKLGFVHHA---KTLFDQMP-HRDVVAYNSMMAGYV 325
Query: 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
+ +AL++FS M + S + PD+ V VL A
Sbjct: 326 QNKYHM----------------EALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105
D LW +I + R+AL L + + + D+F++ +L A + LG ++ G I
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 106 TYIDKNKVKNDIFAGNALIDMYCKC 130
++ K + +D+F N LI +Y KC
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKC 169
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
EIF M ++ S+ +++GYI +++ A++ F +MP RD V W+TMI G F E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
+ F+E+Q + + +E ++ +L+A + G+ E G+ + +++K + NALID
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312
Query: 126 MYCKC----------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
MY +C +WT+MI GLA+ G G++A+ +F++M + PD +
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 170 AYVGVLSARTH 180
+++ +L A +H
Sbjct: 373 SFISLLHACSH 383
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 27/162 (16%)
Query: 21 AIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y V +AR F+ M E R V WT+MI G + EA+ LF E+ +
Sbjct: 309 ALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVT 368
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK----VKNDIFAGNALIDMYCKCTVKFT 135
D + +S+L A ++ G +E GE Y + K ++ +I ++D+Y +
Sbjct: 369 PDGISFISLLHACSHAGLIEEGE---DYFSEMKRVYHIEPEIEHYGCMVDLYGR------ 419
Query: 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
SG KA D QM I P + + +L A
Sbjct: 420 ----------SGKLQKAYDFICQM---PIPPTAIVWRTLLGA 448
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARA 93
AR+ PE D ++ T++ GY + ++ +F E+ + D F+ ++ A
Sbjct: 58 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117
Query: 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130
N +L G + K+ +++ +F G LI MY C
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGC 154
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 21/186 (11%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV ++ Y + +D+AR+ FD+MPER V W +MID +R + AL LF+E+Q
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKC- 130
S D +T+ S+L+A A LG+L LG W ++ + V D+ N+LI+MYCKC
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 131 TVKF--------------TWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 174
+++ +W MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 175 LSARTH 180
L A H
Sbjct: 364 LIACNH 369
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 115 bits (287), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYL 58
M E+F M ++ +S++ +V GY +++AR FD+MP ++ V WT +I GY
Sbjct: 232 MSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYA 291
Query: 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118
+EA L ++ S + D ++SIL A G L LG I + + ++ + ++ +
Sbjct: 292 EKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAY 351
Query: 119 AGNALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163
NAL+DMY KC +K +W TM+ GL + G+G +A+++FS+M R
Sbjct: 352 VLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411
Query: 164 IKPDEVAYVGVLSARTH 180
I+PD+V ++ VL + H
Sbjct: 412 IRPDKVTFIAVLCSCNH 428
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 5 LEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR 64
+++F M +D +S+ +++ G + ++ AR+ FD+MP+RD + W TM+DGY R
Sbjct: 174 MKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMS 233
Query: 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
+A LF+++ N + + +++ + G +E+ + DK + A N +
Sbjct: 234 KAFELFEKMPERNTV----SWSTMVMGYSKAGDMEMA---RVMFDKMPLP----AKNVV- 281
Query: 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
TWT +I G A G +A + QM+ + +K D A + +L+A T +
Sbjct: 282 ----------TWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 31 QVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90
Q ++A + F+Q+ E + L ++I + + ++ +A +F E+Q + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------TVKF--------- 134
A + L + + + +I+K + +DI+ NALID Y +C +K
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 135 -TWTTMIVGLAISGNGDKALDMFSQM 159
+W +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A F+ +P++D V W TM+ G +EA+ LF ++ I
Sbjct: 355 ALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRP 414
Query: 81 DEFTIVSILTARANLGALELG 101
D+ T +++L + + G ++ G
Sbjct: 415 DKVTFIAVLCSCNHAGLIDEG 435
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M + ++S TA+++ Y + V+ AR FD M ERD V W MIDGY + +
Sbjct: 182 KVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPND 241
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL LFQ+ + DE T+V+ L+A + +GALE G WI ++ ++++ ++ LI
Sbjct: 242 ALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLI 301
Query: 125 DMYCKC------------TVK---FTWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDE 168
DMY KC T + W MI G A+ G AL +F++M ++P +
Sbjct: 302 DMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD 361
Query: 169 VAYVGVLSARTH 180
+ ++G L A H
Sbjct: 362 ITFIGTLQACAH 373
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 53/201 (26%)
Query: 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFR-EALTLFQEIQTSNIMGDEF 83
Y + ++ + F Q + D L+T I+ +N + +A L+ ++ +S I +EF
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAIN-TASINGLKDQAFLLYVQLLSSEINPNEF 131
Query: 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------------- 129
T S+L + + + G+ I T++ K + D + L+D+Y K
Sbjct: 132 TFSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRM 187
Query: 130 -------------CTVK-------------------FTWTTMIVGLAISGNGDKALDMFS 157
C K +W MI G A G + AL +F
Sbjct: 188 PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQ 247
Query: 158 QML-RASIKPDEVAYVGVLSA 177
++L KPDE+ V LSA
Sbjct: 248 KLLAEGKPKPDEITVVAALSA 268
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 102/183 (55%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D + +++++ Y +D AR FD++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-- 130
+ S +E+T +L A A+L ELG+ + Y+ + FA ++L+DMY KC
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 131 --TVKF-----------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ K +WT++I G A +G D+AL F +L++ KPD V +V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 178 RTH 180
TH
Sbjct: 430 CTH 432
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M N+D+ S+ +V+GY ++ AR+ FD+M E+D WT M+ GY++ ++ E
Sbjct: 141 KVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEE 200
Query: 66 ALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL L+ +Q N + FT+ + A A + + G+ I +I + + +D ++L+
Sbjct: 201 ALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLM 260
Query: 125 DMYCKCTV---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169
DMY KC +WT+MI S + +FS+++ + +P+E
Sbjct: 261 DMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEY 320
Query: 170 AYVGVLSA 177
+ GVL+A
Sbjct: 321 TFAGVLNA 328
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+++V Y ++ A+ D P+ D V WT++I G + + EAL F + S
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 80 GDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCKC-------- 130
D T V++L+A + G +E G E+ + +K+++ + L+D+ +
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 131 --------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYV 172
KF W +++ G + GN D A + ++ + I+P+ V YV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 526
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 19/199 (9%)
Query: 1 MGFTLEIFGTM----KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDG 56
+G + +I G M N D+ + +A++ Y N + +R FD+M +D V+W +M G
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529
Query: 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116
Y++ + EAL LF E+Q S DEFT +++TA NL +++LG+ + K ++ +
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589
Query: 117 IFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALDMFSQMLR 161
+ NAL+DMY KC W ++I A G G KAL M +M+
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 162 ASIKPDEVAYVGVLSARTH 180
I+P+ + +VGVLSA +H
Sbjct: 650 EGIEPNYITFVGVLSACSH 668
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
++DV T ++ Y+ +D AR FD +PE+ V WTTMI G +++ R +L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N++ D + + ++L+A + L LE G+ I +I + ++ D N LID Y KC
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+WTT++ G + +A+++F+ M + +KPD A +L++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81
++ Y+ +V A + F+ MP ++ + WTT++ GY + +EA+ LF + + D
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV--------- 132
+ SILT+ A+L AL G + Y K + ND + N+LIDMY KC
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409
Query: 133 ------KFTWTTMIVGLAISGNG---DKALDMFSQMLRASIKPDEVAYVGVLSA 177
+ MI G + G +AL++F M I+P + +V +L A
Sbjct: 410 IFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTA 91
AR+ FD D VL+ MI+GY R+ EAL +F++++ I T VS+L A
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-------------TVK--FTW 136
A+L +L L + I + K + DIFAG+ALID+Y C VK W
Sbjct: 464 SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIW 523
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+M G ++AL++F ++ + +PDE + +++A
Sbjct: 524 NSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTA 564
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEI-QTSNIMGDEFTIVSILTARA 93
AR+ F++MPER+ V W+TM+ + E+L +F E +T +E+ + S + A +
Sbjct: 98 ARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157
Query: 94 NLGALELGEW----IKTYIDKNKVKNDIFAGNALIDMYC-----------------KCTV 132
L G W +++++ K+ D++ G LID Y K TV
Sbjct: 158 GLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTV 215
Query: 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TWTTMI G G +L +F Q++ ++ PD VLSA
Sbjct: 216 --TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSA 258
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A++ Y + A + FD RD V W ++I Y ++AL + +++ + I
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP 654
Query: 81 DEFTIVSILTARANLGALELG 101
+ T V +L+A ++ G +E G
Sbjct: 655 NYITFVGVLSACSHAGLVEDG 675
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 24/195 (12%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+GF +F T TA+V Y + AR+ FD + ERD LWT++I GY++
Sbjct: 351 LGFERHLFAT---------TALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQN 401
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
+ EAL L++ ++T+ I+ ++ T+ S+L A ++L LELG+ + + K+ ++ G
Sbjct: 402 SDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG 461
Query: 121 NALIDMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
+AL MY KC + F +W MI GL+ +G GD+AL++F +ML ++
Sbjct: 462 SALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGME 521
Query: 166 PDEVAYVGVLSARTH 180
PD+V +V ++SA +H
Sbjct: 522 PDDVTFVNIISACSH 536
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
D+ T++V Y V+ + F MPER+ W+TM+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 75 TSNIMG--DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
G ++ ++L++ A + LG I KN + + NAL+ MY KC
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 133 ---------------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW+ M+ G + +G +A+ +FS+M A IKP E VGVL+A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80
A+V+ Y E ++ A + FD +R+ + W+ M+ GY + EA+ LF + ++ I
Sbjct: 261 ALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKP 320
Query: 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CTVKFT--- 135
E+TIV +L A +++ LE G+ + +++ K + +FA AL+DMY K C
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGF 380
Query: 136 ----------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
WT++I G + + ++AL ++ +M A I P++ VL A
Sbjct: 381 DCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKA 432
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALT---LFQEIQTSNI 78
+V+ Y ++ A F+ + +D V W ++I GY + + T LF+E++ +I
Sbjct: 55 LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI 114
Query: 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------ 132
+ + +T+ I A ++L + +G + K DI+ +L+ MYCK +
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV--GVLSA 177
+TW+TM+ G A G ++A+ +F+ LR + + YV VLS+
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 39 FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98
F + P +D V W MI G + EAL LF+E+ + D+ T V+I++A ++ G +
Sbjct: 481 FRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFV 540
Query: 99 ELG 101
E G
Sbjct: 541 ERG 543
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 114 bits (284), Expect = 5e-25, Method: Composition-based stats.
Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 16/171 (9%)
Query: 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85
Y N V A + FD+MPE+D V W ++I+G+ + EAL L+ E+ + I D FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------------- 130
VS+L+A A +GAL LG+ + Y+ K + ++ + N L+D+Y +C
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSARTH 180
+WT++IVGLA++G G +A+++F M + P E+ +VG+L A +H
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTY 107
+W T+I GY + A +L++E++ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 108 IDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAISGNGDKA 152
+ ++ + I+ N+L+ +Y C W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 153 LDMFSQMLRASIKPDEVAYVGVLSA 177
L ++++M IKPD V +LSA
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSA 231
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF-REALTLFQE 72
+++ S ++ Y +V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 73 IQ-TSNIMGDEFTIVSILTARANLGALELG-EWIKTYIDKNKVKNDIFAGNALIDMYCK 129
++ T ++ E T V IL A ++ G ++ G E+ + ++ K++ I ++D+ +
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLAR 372
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++ +++ +++G N + A ++MP R V WTT+IDGY RV++ +E
Sbjct: 179 KVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKE 238
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNAL 123
A+ LF + I +E TI++IL A NLG L++ + Y+ K V DI N+L
Sbjct: 239 AILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSL 298
Query: 124 IDMYCKC-----TVKF------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166
ID Y KC KF +WTTMI AI G G +A+ MF M R +KP
Sbjct: 299 IDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKP 358
Query: 167 DEVAYVGVLSARTH 180
+ V + VL+A +H
Sbjct: 359 NRVTMISVLNACSH 372
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQE 72
D+ +++ Y + A + F ++P ++ V WTTMI + +EA+++F++
Sbjct: 291 DIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKD 350
Query: 73 IQTSNIMGDEFTIVSILTA--RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126
++ + + T++S+L A L E E+ T +++ K+ D+ L+DM
Sbjct: 351 MERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 406
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 17/178 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ + + AR+ FD++P+ D V W +++GY+R E L +F+E+ +
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLE 215
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCTV------ 132
DEF++ + LTA A +GAL G+WI ++ K +++D+F G AL+DMY KC
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
F+W +I G A G KA+ ++ R IKPD V +GVL+A H
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAH 333
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F ++ R+ W +I GY ++A+T + ++
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLE 312
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCK 129
+ I D ++ +L A A+ G LE G ++ ++ + + +I + ++D+ C+
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG---RSMLENMEARYEITPKHEHYSCIVDLMCR 369
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D AL++ +M +KP + +L+ RTH
Sbjct: 370 ----------------AGRLDDALNLIEKM---PMKPLASVWGALLNGCRTHK 403
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 102/180 (56%), Gaps = 15/180 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
N DV + T+++S Y +++ A + FD++P+R V WT + GY R REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ + D + IV +L+A ++G L+ GEWI Y+++ +++ + F L+++Y KC
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
TW+TMI G A + + +++F QML+ ++KPD+ + VG LS+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
K+ T +V+ Y +++ AR FD M E+D V W+TMI GY + +E + LF +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQ 303
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132
+ N+ D+F+IV L++ A+LGAL+LGEW + ID+++ ++F NALIDMY KC
Sbjct: 304 MLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGA 363
Query: 133 K---------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
I GLA +G+ + +F Q + I PD ++G+L
Sbjct: 364 MARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCG 423
Query: 178 RTH 180
H
Sbjct: 424 CVH 426
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 41 QMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100
Q P + L+ ++I+G++ + F E L LF I+ + FT +L A + +L
Sbjct: 72 QFP--NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKL 129
Query: 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------TVKFTWTTMIVGLAI 145
G + + + K +D+ A +L+ +Y TWT + G
Sbjct: 130 GIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTT 189
Query: 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
SG +A+D+F +M+ +KPD V VLSA H
Sbjct: 190 SGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 17/178 (9%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
T ++ Y+ + + AR+ FD++P+ D V W +++GY+R E L +F+E+ I
Sbjct: 156 TGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIE 215
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCTV------ 132
DEF++ + LTA A +GAL G+WI ++ K + +++D+F G AL+DMY KC
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 133 ---------KFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSARTH 180
F+W +I G A G KA ++ R IKPD V +GVL+A H
Sbjct: 276 VFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAH 333
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74
DV TA+V Y ++ A + F+++ R+ W +I GY ++A T I+
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIE 312
Query: 75 TSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCK 129
+ I D ++ +L A A+ G LE G +T ++ + + I + ++D+ C+
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG---RTMLENMEARYGITPKHEHYSCIVDLMCR 369
Query: 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA-RTHN 181
+G D ALD+ +M +KP + +L+ RTH
Sbjct: 370 ----------------AGRLDDALDLIEKM---PMKPLASVWGALLNGCRTHK 403
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
M E+F M ++V ++ +++GY ++ A+ FD+MP+RD V W MI GY +
Sbjct: 328 MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 387
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
EAL LF +++ + + S L+ A++ ALELG+ + + K + F G
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVG 447
Query: 121 NALIDMYCKC-TVK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165
NAL+ MYCKC +++ +W TMI G + G G+ AL F M R +K
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 166 PDEVAYVGVLSARTH 180
PD+ V VLSA +H
Sbjct: 508 PDDATMVAVLSACSH 522
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F +DV ++TA+VSGYI V+ AR+ FD+MPER+ V W M+ GY++ R
Sbjct: 271 QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEM 330
Query: 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125
A LF + N+ T +++T A G + K DK ++ +
Sbjct: 331 AKELFDVMPCRNVS----TWNTMITGYAQCGKISEA---KNLFDKMPKRDPV-------- 375
Query: 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176
+W MI G + SG+ +AL +F QM R + + ++ LS
Sbjct: 376 ---------SWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALS 417
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF 63
L +F M +SY ++SGY+ + ++AR+ FD+MPERD V W MI GY+R
Sbjct: 83 ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNL 142
Query: 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123
+A LF+ + ++ + ++L+ A G ++ ++ D+ KND+ + NAL
Sbjct: 143 GKARELFEIMPERDVC----SWNTMLSGYAQNGCVDDA---RSVFDRMPEKNDV-SWNAL 194
Query: 124 IDMY 127
+ Y
Sbjct: 195 LSAY 198
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
+G E+F M +DV S+ ++SGY VD AR FD+MPE++ V W ++ Y++
Sbjct: 142 LGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQN 201
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120
++ EA LF+ +R N + + ++ K K+ + A
Sbjct: 202 SKMEEACMLFK-------------------SRENWALVSWNCLLGGFVKKKKI---VEAR 239
Query: 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQ 158
M + V +W T+I G A SG D+A +F +
Sbjct: 240 QFFDSMNVRDVV--SWNTIITGYAQSGKIDEARQLFDE 275
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ D+ + +S Y+ + + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 73 IQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131
+ +++ I + R NLG A EL E + + D+ C
Sbjct: 121 MPERDLVSWNVMIKGYVRNR-NLGKARELFEIMP--------ERDV----------C--- 158
Query: 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181
+W TM+ G A +G D A +F +M + ++V++ +LSA N
Sbjct: 159 ---SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQN 201
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
A++ Y ++ A F +M +D V W TMI GY R AL F+ ++ +
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 80 GDEFTIVSILTARANLGALELG 101
D+ T+V++L+A ++ G ++ G
Sbjct: 508 PDDATMVAVLSACSHTGLVDKG 529
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 16/176 (9%)
Query: 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IM 79
A++ Y+ EQ+ A + F ++ ++D V W +MI G + R +EA+ LF +QTS+ I
Sbjct: 244 ALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIK 303
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV------- 132
D + S+L+A A+LGA++ G W+ YI +K D G A++DMY KC
Sbjct: 304 PDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEI 363
Query: 133 --------KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
FTW ++ GLAI G+G ++L F +M++ KP+ V ++ L+A H
Sbjct: 364 FNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCH 419
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94
A + F +MP RD V WT +I G+ R ++EAL F ++ + T V +L +
Sbjct: 160 ACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNLA---TYVCVLVSSGR 216
Query: 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV---------------KFTWTTM 139
+G L LG+ I I K + GNALIDMY KC K +W +M
Sbjct: 217 VGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSM 276
Query: 140 IVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 177
I GL +A+D+FS M +S IKPD VLSA
Sbjct: 277 ISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSA 315
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109
+ T++ Y ++ R + ++ ++ D FT + A + G+ I +
Sbjct: 74 YNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVT 133
Query: 110 KNKVKNDIFAGNALIDMYCKCTVK---------------FTWTTMIVGLAISGNGDKALD 154
K +DI+ N+L+ Y C +WT +I G +G +ALD
Sbjct: 134 KMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALD 193
Query: 155 MFSQMLRASIKPDEVAYVGVL 175
FS+M ++P+ YV VL
Sbjct: 194 TFSKM---DVEPNLATYVCVL 211
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
TAIV Y ++ A + F+ + ++ W ++ G E+L F+E+
Sbjct: 345 TAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFK 404
Query: 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAG----NALIDMYCKCTVKF 134
+ T ++ L A + G ++ G + Y K K + ++F +ID+ C+
Sbjct: 405 PNLVTFLAALNACCHTGLVDEG---RRYFHKMKSREYNLFPKLEHYGCMIDLLCR----- 456
Query: 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+G D+AL++ M +KPD +LSA
Sbjct: 457 -----------AGLLDEALELVKAM---PVKPDVRICGAILSA 485
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 107/194 (55%), Gaps = 19/194 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M ++V+S+TA++SGY + A F+ MPERD W ++ + F E
Sbjct: 183 QLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLE 242
Query: 66 ALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
A++LF+ I +I +E T+V +L+A A G L+L + I + + + +D+F N+L+
Sbjct: 243 AVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLV 302
Query: 125 DMYCKC------TVKF---------TWTTMIVGLAISGNGDKALDMFSQMLRAS---IKP 166
D+Y KC + F W +MI A+ G ++A+ +F +M++ + IKP
Sbjct: 303 DLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKP 362
Query: 167 DEVAYVGVLSARTH 180
D + ++G+L+A TH
Sbjct: 363 DHITFIGLLNACTH 376
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65
++F M +K+++++ +I+ Y V AR FD+M ERD V W++MIDGY++ + +
Sbjct: 164 KLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNK 223
Query: 66 ALTLF-QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124
AL +F Q ++ + +E T+VS++ A A+LGAL G+ + YI + + +LI
Sbjct: 224 ALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLI 283
Query: 125 DMYCKC-------------TVKFT----WTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167
DMY KC +VK T W +I GLA G ++L +F +M + I PD
Sbjct: 284 DMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPD 343
Query: 168 EVAYVGVLSARTH 180
E+ ++ +L+A +H
Sbjct: 344 EITFLCLLAACSH 356
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 47/220 (21%)
Query: 8 FGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67
G + + +S T S + VD A + ++ + W +I G+ +++
Sbjct: 34 LGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSI 93
Query: 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127
+++ ++ ++ D T ++ + + L +LG + + K+ ++ D+F N LI MY
Sbjct: 94 SVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMY 153
Query: 128 C----KCTVK-----------FTW-------------------------------TTMIV 141
+ + + TW ++MI
Sbjct: 154 GSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMID 213
Query: 142 GLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSARTH 180
G G +KAL++F QM+R S K +EV V V+ A H
Sbjct: 214 GYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAH 253
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96
E D ++W +I G RE+L LF +++ S I DE T + +L A ++ G
Sbjct: 306 ETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGG 358
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 17/194 (8%)
Query: 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRV 60
MG ++F M ++V+ + ++ G+ + V+ F QM ER V W +MI +
Sbjct: 153 MGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKC 212
Query: 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND-IFA 119
R REAL LF E+ DE T+V++L A+LG L+ G+WI + + + + D I
Sbjct: 213 GRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITV 272
Query: 120 GNALIDMYCK------CTVKF---------TWTTMIVGLAISGNGDKALDMFSQML-RAS 163
GNAL+D YCK T F +W T+I G A++G G+ +D+F M+
Sbjct: 273 GNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGK 332
Query: 164 IKPDEVAYVGVLSA 177
+ P+E ++GVL+
Sbjct: 333 VAPNEATFLGVLAC 346
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 15/183 (8%)
Query: 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQE 72
+ DV +++V Y +++ + + F ++ RD + W +++ GY++ R+ EAL LF++
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-T 131
+ T+ + S++ A A+L L LG+ + Y+ + ++IF +AL+DMY KC
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 132 VK--------------FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177
+K +WT +I+G A+ G+G +A+ +F +M R +KP++VA+V VL+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 178 RTH 180
+H
Sbjct: 454 CSH 456
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91
+D R+ F+ MP +D V + T+I GY + + +AL + +E+ T+++ D FT+ S+L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK---------------CTVKFTW 136
+ + G+ I Y+ + + +D++ G++L+DMY K C +W
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180
+++ G +G ++AL +F QM+ A +KP VA+ V+ A H
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79
+A+V Y + AR+ FD+M D V WT +I G+ EA++LF+E++ +
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441
Query: 80 GDEFTIVSILTARANLGALE 99
++ V++LTA +++G ++
Sbjct: 442 PNQVAFVAVLTACSHVGLVD 461
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 51/209 (24%)
Query: 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77
S + ++S Y N + + A F + + W ++I + + F +AL F E++ S
Sbjct: 41 SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASG 100
Query: 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------- 129
D S+L + + L GE + +I + + D++ GNAL++MY K
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160
Query: 130 -------------------------CTVKF------------------TWTTMIVGLAIS 146
C + F ++ T+I G A S
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220
Query: 147 GNGDKALDMFSQMLRASIKPDEVAYVGVL 175
G + AL M +M +KPD VL
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,454,626
Number of Sequences: 539616
Number of extensions: 2309319
Number of successful extensions: 11919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 8177
Number of HSP's gapped (non-prelim): 2120
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)