Query 038237
Match_columns 181
No_of_seqs 173 out of 1366
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 08:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.4E-38 3.1E-43 255.3 18.4 168 14-181 257-439 (697)
2 PLN03218 maturation of RBCL 1; 100.0 3.9E-37 8.4E-42 252.0 18.9 179 2-180 559-766 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 6.8E-37 1.5E-41 250.6 19.1 179 2-180 454-661 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 9.8E-36 2.1E-40 239.0 17.7 179 2-180 140-337 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.3E-35 2.9E-40 242.9 18.0 167 14-180 220-401 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.2E-35 4.7E-40 241.7 17.5 179 3-181 306-602 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 2.2E-17 4.8E-22 88.6 6.0 49 132-180 2-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 1.3E-16 2.8E-21 85.6 6.6 50 45-94 1-50 (50)
9 KOG4422 Uncharacterized conser 99.6 8.3E-14 1.8E-18 102.8 14.4 168 7-178 198-443 (625)
10 PRK11788 tetratricopeptide rep 99.5 1.1E-12 2.3E-17 99.4 16.6 173 2-177 124-324 (389)
11 PRK11788 tetratricopeptide rep 99.5 1E-11 2.3E-16 94.0 16.8 110 2-112 52-171 (389)
12 TIGR02917 PEP_TPR_lipo putativ 99.3 3.1E-10 6.7E-15 93.6 18.1 174 3-179 687-882 (899)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 5.2E-10 1.1E-14 92.3 17.8 157 18-178 637-814 (899)
14 KOG4422 Uncharacterized conser 99.3 1.4E-10 3E-15 86.1 12.4 117 44-180 204-324 (625)
15 PF12854 PPR_1: PPR repeat 99.1 1.7E-10 3.6E-15 56.2 3.6 31 13-43 4-34 (34)
16 PF12854 PPR_1: PPR repeat 99.1 1.6E-10 3.4E-15 56.3 3.0 32 77-108 2-33 (34)
17 TIGR00756 PPR pentatricopeptid 99.0 4.7E-10 1E-14 55.0 4.2 35 134-168 1-35 (35)
18 PF13812 PPR_3: Pentatricopept 99.0 9.7E-10 2.1E-14 53.6 4.2 34 133-166 1-34 (34)
19 PF13429 TPR_15: Tetratricopep 99.0 1.5E-08 3.2E-13 73.8 11.6 174 2-178 61-258 (280)
20 TIGR00756 PPR pentatricopeptid 98.9 2.7E-09 5.7E-14 52.3 3.8 35 48-82 1-35 (35)
21 KOG4318 Bicoid mRNA stability 98.9 4.1E-08 8.8E-13 78.8 12.2 165 12-180 21-283 (1088)
22 TIGR02521 type_IV_pilW type IV 98.9 1E-06 2.3E-11 61.4 17.9 156 16-173 31-208 (234)
23 PF13812 PPR_3: Pentatricopept 98.8 6.9E-09 1.5E-13 50.5 4.2 33 48-80 2-34 (34)
24 PRK15174 Vi polysaccharide exp 98.8 1E-06 2.2E-11 71.4 17.6 30 132-161 317-346 (656)
25 PF13429 TPR_15: Tetratricopep 98.8 3.5E-08 7.6E-13 71.8 8.1 157 2-161 94-276 (280)
26 TIGR02521 type_IV_pilW type IV 98.8 1.3E-06 2.9E-11 60.8 15.6 160 2-162 48-232 (234)
27 PRK15174 Vi polysaccharide exp 98.7 1.6E-06 3.4E-11 70.3 17.2 29 133-161 284-312 (656)
28 PF01535 PPR: PPR repeat; Int 98.7 1.4E-08 3.1E-13 48.2 3.2 31 134-164 1-31 (31)
29 KOG4318 Bicoid mRNA stability 98.7 5.3E-08 1.1E-12 78.2 8.1 133 44-177 22-248 (1088)
30 PRK10747 putative protoheme IX 98.7 3.6E-06 7.7E-11 64.4 17.1 172 2-179 135-372 (398)
31 TIGR00990 3a0801s09 mitochondr 98.7 2.5E-06 5.5E-11 68.8 16.9 159 2-162 311-496 (615)
32 TIGR00990 3a0801s09 mitochondr 98.7 3.6E-06 7.9E-11 67.8 17.4 94 17-111 400-496 (615)
33 PRK09782 bacteriophage N4 rece 98.7 2.6E-06 5.7E-11 71.5 16.3 98 61-161 590-705 (987)
34 PRK12370 invasion protein regu 98.7 3.2E-06 6.9E-11 67.3 16.1 126 2-129 321-453 (553)
35 PF08579 RPM2: Mitochondrial r 98.6 2.7E-07 5.9E-12 56.7 7.3 85 87-180 30-116 (120)
36 PF01535 PPR: PPR repeat; Int 98.6 5.3E-08 1.1E-12 46.2 3.3 30 49-78 2-31 (31)
37 TIGR00540 hemY_coli hemY prote 98.6 2.2E-05 4.9E-10 60.3 18.4 176 3-179 136-381 (409)
38 PF08579 RPM2: Mitochondrial r 98.6 1.7E-06 3.8E-11 53.2 9.4 81 49-129 27-116 (120)
39 PF10037 MRP-S27: Mitochondria 98.6 1.7E-06 3.6E-11 65.9 11.4 119 46-180 65-185 (429)
40 PRK12370 invasion protein regu 98.5 2.5E-05 5.4E-10 62.3 18.0 159 2-162 278-470 (553)
41 PRK09782 bacteriophage N4 rece 98.5 3.7E-05 8E-10 64.8 18.7 157 3-162 494-672 (987)
42 PF06239 ECSIT: Evolutionarily 98.5 1.8E-06 3.8E-11 59.3 8.3 98 81-180 46-150 (228)
43 PRK11189 lipoprotein NlpI; Pro 98.4 6E-05 1.3E-09 55.4 16.6 165 3-172 82-274 (296)
44 PRK11447 cellulose synthase su 98.4 1.8E-05 4E-10 68.2 15.6 152 2-166 590-745 (1157)
45 KOG1126 DNA-binding cell divis 98.4 7.2E-06 1.6E-10 64.3 11.6 153 15-174 420-596 (638)
46 PRK10747 putative protoheme IX 98.4 6.6E-05 1.4E-09 57.5 16.7 159 3-162 102-292 (398)
47 PRK10049 pgaA outer membrane p 98.4 7.7E-05 1.7E-09 61.8 18.2 159 2-161 254-455 (765)
48 PF10037 MRP-S27: Mitochondria 98.4 3.9E-06 8.5E-11 63.9 9.9 117 14-130 64-186 (429)
49 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-05 4.8E-10 59.5 13.6 124 19-160 172-295 (395)
50 TIGR00540 hemY_coli hemY prote 98.4 0.00017 3.6E-09 55.5 18.1 160 2-162 101-292 (409)
51 PF06239 ECSIT: Evolutionarily 98.4 7.2E-06 1.6E-10 56.4 9.4 96 36-131 34-152 (228)
52 PRK11447 cellulose synthase su 98.3 4.7E-05 1E-09 65.8 16.1 160 2-162 478-700 (1157)
53 PF04733 Coatomer_E: Coatomer 98.3 1.2E-05 2.6E-10 58.8 10.5 132 25-162 111-265 (290)
54 COG2956 Predicted N-acetylgluc 98.3 5.8E-05 1.3E-09 54.9 13.5 113 1-114 51-173 (389)
55 COG3071 HemY Uncharacterized e 98.3 8.3E-05 1.8E-09 55.3 14.2 163 14-179 185-372 (400)
56 PRK15359 type III secretion sy 98.3 9.8E-05 2.1E-09 48.4 13.0 107 38-162 15-121 (144)
57 PRK15359 type III secretion sy 98.2 7.1E-05 1.5E-09 49.0 11.9 106 6-112 14-122 (144)
58 COG4783 Putative Zn-dependent 98.2 0.00019 4.1E-09 54.8 14.8 141 27-171 317-462 (484)
59 PRK10370 formate-dependent nit 98.2 0.00027 5.7E-09 48.9 14.2 108 45-171 71-181 (198)
60 PRK14574 hmsH outer membrane p 98.1 0.00067 1.5E-08 56.4 18.0 85 25-111 111-198 (822)
61 PRK10049 pgaA outer membrane p 98.1 0.00018 3.9E-09 59.7 14.9 139 3-160 33-177 (765)
62 COG5010 TadD Flp pilus assembl 98.1 0.00014 3E-09 51.3 11.9 130 15-162 99-231 (257)
63 KOG1070 rRNA processing protei 98.1 0.00031 6.7E-09 59.9 15.7 117 49-168 1532-1669(1710)
64 KOG2003 TPR repeat-containing 98.1 0.00017 3.6E-09 55.1 12.9 175 1-178 506-704 (840)
65 KOG1129 TPR repeat-containing 98.1 0.0001 2.2E-09 54.0 11.2 159 3-162 241-458 (478)
66 PRK14574 hmsH outer membrane p 98.1 0.00025 5.4E-09 58.9 14.6 140 3-162 52-198 (822)
67 PF04733 Coatomer_E: Coatomer 98.1 0.0003 6.5E-09 51.5 13.6 153 13-175 63-242 (290)
68 KOG1840 Kinesin light chain [C 98.1 0.00021 4.5E-09 56.0 13.2 159 2-160 265-477 (508)
69 COG2956 Predicted N-acetylgluc 98.0 0.00024 5.1E-09 51.9 11.5 146 1-147 123-279 (389)
70 PRK15179 Vi polysaccharide bio 98.0 0.00052 1.1E-08 56.1 14.8 130 15-162 85-217 (694)
71 COG3071 HemY Uncharacterized e 98.0 0.002 4.3E-08 48.3 16.4 168 3-171 102-301 (400)
72 KOG1126 DNA-binding cell divis 98.0 0.00036 7.9E-09 55.1 13.3 144 1-162 471-620 (638)
73 TIGR02552 LcrH_SycD type III s 98.0 0.00051 1.1E-08 44.1 12.1 61 50-111 20-80 (135)
74 KOG1155 Anaphase-promoting com 98.0 0.00055 1.2E-08 52.3 13.3 125 49-176 332-474 (559)
75 PF05843 Suf: Suppressor of fo 97.9 0.00012 2.5E-09 53.5 9.4 145 17-178 2-150 (280)
76 KOG2003 TPR repeat-containing 97.9 0.00065 1.4E-08 52.0 13.3 149 28-180 502-671 (840)
77 COG3063 PilF Tfp pilus assembl 97.9 0.0016 3.5E-08 45.4 13.9 141 14-172 66-211 (250)
78 KOG4626 O-linked N-acetylgluco 97.9 0.00018 4E-09 56.8 10.1 159 4-167 237-420 (966)
79 KOG4626 O-linked N-acetylgluco 97.9 0.0012 2.7E-08 52.4 14.5 161 2-168 303-489 (966)
80 KOG3081 Vesicle coat complex C 97.9 0.00082 1.8E-08 47.8 12.2 95 19-114 140-239 (299)
81 PRK11189 lipoprotein NlpI; Pro 97.9 0.0028 6.1E-08 46.6 15.5 95 17-113 65-163 (296)
82 TIGR02552 LcrH_SycD type III s 97.8 0.00072 1.6E-08 43.4 10.8 97 15-112 16-115 (135)
83 TIGR03302 OM_YfiO outer membra 97.8 0.00083 1.8E-08 47.5 11.7 147 15-162 32-232 (235)
84 PF12921 ATP13: Mitochondrial 97.8 0.00051 1.1E-08 43.9 9.1 48 78-125 48-96 (126)
85 PRK10370 formate-dependent nit 97.8 0.00063 1.4E-08 47.0 10.3 100 14-114 71-176 (198)
86 cd00189 TPR Tetratricopeptide 97.8 0.00045 9.8E-09 40.4 8.5 93 18-111 2-97 (100)
87 COG5010 TadD Flp pilus assembl 97.8 0.00028 6.1E-09 49.8 8.3 109 2-111 117-231 (257)
88 PF09976 TPR_21: Tetratricopep 97.7 0.0011 2.4E-08 43.4 10.3 124 17-159 13-144 (145)
89 TIGR03302 OM_YfiO outer membra 97.7 0.0069 1.5E-07 42.8 15.0 135 44-178 30-213 (235)
90 KOG2047 mRNA splicing factor [ 97.7 0.0039 8.4E-08 49.7 14.4 166 4-179 94-292 (835)
91 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0004 8.7E-09 52.9 8.8 107 2-110 186-296 (395)
92 KOG1840 Kinesin light chain [C 97.7 0.0032 6.9E-08 49.5 13.9 144 18-161 201-395 (508)
93 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0018 3.9E-08 40.3 10.1 98 17-114 3-108 (119)
94 cd05804 StaR_like StaR_like; a 97.6 0.011 2.5E-07 44.3 15.9 145 18-162 116-293 (355)
95 PRK15179 Vi polysaccharide bio 97.6 0.0043 9.3E-08 50.9 14.0 123 1-125 102-230 (694)
96 cd00189 TPR Tetratricopeptide 97.6 0.0026 5.7E-08 37.0 10.0 95 50-162 3-97 (100)
97 KOG2002 TPR-containing nuclear 97.6 0.00071 1.5E-08 55.8 9.3 161 2-165 629-801 (1018)
98 PF12921 ATP13: Mitochondrial 97.6 0.00064 1.4E-08 43.4 7.1 43 135-177 54-97 (126)
99 KOG3941 Intermediate in Toll s 97.5 0.0015 3.3E-08 47.1 9.2 83 96-180 86-170 (406)
100 PLN03088 SGT1, suppressor of 97.5 0.0053 1.1E-07 46.5 12.6 86 25-111 11-99 (356)
101 cd05804 StaR_like StaR_like; a 97.5 0.0062 1.3E-07 45.7 13.0 119 29-162 93-215 (355)
102 PF12895 Apc3: Anaphase-promot 97.5 0.00023 4.9E-09 42.0 4.3 77 29-107 2-83 (84)
103 KOG0547 Translocase of outer m 97.5 0.0038 8.2E-08 48.2 11.5 132 29-161 407-565 (606)
104 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0084 1.8E-07 37.2 12.7 99 48-162 3-105 (119)
105 COG3063 PilF Tfp pilus assembl 97.4 0.015 3.2E-07 40.8 12.6 128 19-162 38-168 (250)
106 KOG2076 RNA polymerase III tra 97.3 0.019 4.1E-07 47.4 14.3 167 2-169 156-352 (895)
107 KOG1129 TPR repeat-containing 97.3 0.0048 1E-07 45.5 9.9 90 20-111 227-319 (478)
108 KOG1155 Anaphase-promoting com 97.3 0.048 1E-06 42.2 16.1 48 132-180 397-444 (559)
109 KOG3941 Intermediate in Toll s 97.3 0.005 1.1E-07 44.5 9.6 97 35-131 53-172 (406)
110 KOG1128 Uncharacterized conser 97.3 0.0021 4.6E-08 51.7 8.4 78 84-162 521-616 (777)
111 PF12895 Apc3: Anaphase-promot 97.3 0.00076 1.7E-08 39.7 4.7 81 60-158 2-83 (84)
112 PF12569 NARP1: NMDA receptor- 97.3 0.023 5E-07 45.1 14.0 139 14-161 190-333 (517)
113 PF14559 TPR_19: Tetratricopep 97.3 0.0015 3.2E-08 36.6 5.7 53 58-111 2-54 (68)
114 KOG3081 Vesicle coat complex C 97.3 0.037 8E-07 39.7 14.7 121 20-162 112-236 (299)
115 KOG2002 TPR-containing nuclear 97.2 0.0015 3.2E-08 54.0 7.1 129 30-175 626-758 (1018)
116 PLN02789 farnesyltranstransfer 97.2 0.051 1.1E-06 40.6 14.7 174 2-178 54-265 (320)
117 PLN03088 SGT1, suppressor of 97.2 0.0085 1.8E-07 45.4 10.8 86 2-89 19-110 (356)
118 PRK02603 photosystem I assembl 97.1 0.044 9.6E-07 36.9 13.1 67 46-112 34-102 (172)
119 PRK15363 pathogenicity island 97.0 0.016 3.6E-07 38.2 9.5 94 17-111 36-132 (157)
120 KOG1173 Anaphase-promoting com 97.0 0.011 2.5E-07 46.3 9.8 173 2-178 329-532 (611)
121 KOG0985 Vesicle coat protein c 97.0 0.059 1.3E-06 45.7 14.1 147 15-178 1103-1259(1666)
122 PF14559 TPR_19: Tetratricopep 97.0 0.0018 3.9E-08 36.3 4.1 60 27-88 2-64 (68)
123 PF13432 TPR_16: Tetratricopep 96.9 0.0079 1.7E-07 33.3 6.5 56 55-111 5-60 (65)
124 PRK10153 DNA-binding transcrip 96.9 0.12 2.7E-06 41.2 14.9 139 14-172 335-490 (517)
125 PF03704 BTAD: Bacterial trans 96.9 0.0096 2.1E-07 38.9 7.6 69 87-172 67-140 (146)
126 PF09976 TPR_21: Tetratricopep 96.9 0.0099 2.1E-07 38.9 7.6 84 22-107 54-143 (145)
127 KOG1915 Cell cycle control pro 96.9 0.12 2.5E-06 40.4 13.9 133 28-166 153-354 (677)
128 KOG2076 RNA polymerase III tra 96.9 0.11 2.4E-06 43.1 14.6 122 22-162 146-270 (895)
129 COG4783 Putative Zn-dependent 96.8 0.022 4.8E-07 44.0 10.0 109 2-111 323-437 (484)
130 KOG1914 mRNA cleavage and poly 96.8 0.15 3.3E-06 40.3 14.3 128 17-162 367-501 (656)
131 KOG4340 Uncharacterized conser 96.8 0.018 3.9E-07 42.1 8.8 133 25-158 153-335 (459)
132 PF03704 BTAD: Bacterial trans 96.7 0.018 4E-07 37.5 8.2 71 49-120 64-139 (146)
133 PF12688 TPR_5: Tetratrico pep 96.7 0.069 1.5E-06 33.8 11.3 109 53-179 7-117 (120)
134 PRK02603 photosystem I assembl 96.7 0.09 1.9E-06 35.4 11.4 82 15-97 34-121 (172)
135 PLN02789 farnesyltranstransfer 96.7 0.16 3.4E-06 38.0 13.5 129 18-164 39-173 (320)
136 PF13414 TPR_11: TPR repeat; P 96.7 0.019 4.2E-07 32.1 6.9 64 46-110 2-66 (69)
137 KOG3060 Uncharacterized conser 96.7 0.14 3E-06 36.7 12.5 130 29-161 25-182 (289)
138 PF04840 Vps16_C: Vps16, C-ter 96.7 0.018 3.9E-07 42.9 8.3 123 18-159 179-301 (319)
139 PF13432 TPR_16: Tetratricopep 96.6 0.0095 2.1E-07 33.0 5.2 55 22-76 3-60 (65)
140 PF13414 TPR_11: TPR repeat; P 96.6 0.0084 1.8E-07 33.6 5.0 61 15-75 2-66 (69)
141 PRK15363 pathogenicity island 96.6 0.11 2.4E-06 34.4 12.9 109 36-162 23-132 (157)
142 KOG1070 rRNA processing protei 96.6 0.18 3.9E-06 44.2 14.1 153 4-159 1516-1677(1710)
143 KOG3616 Selective LIM binding 96.5 0.021 4.5E-07 46.7 8.3 96 3-105 750-847 (1636)
144 KOG1914 mRNA cleavage and poly 96.5 0.27 5.8E-06 39.0 13.7 113 63-176 347-480 (656)
145 PF04840 Vps16_C: Vps16, C-ter 96.5 0.12 2.6E-06 38.6 11.7 101 49-159 179-288 (319)
146 PRK14720 transcript cleavage f 96.5 0.34 7.3E-06 41.2 15.2 128 18-162 118-252 (906)
147 PRK10803 tol-pal system protei 96.4 0.11 2.4E-06 37.6 11.1 99 48-162 144-246 (263)
148 CHL00033 ycf3 photosystem I as 96.4 0.15 3.2E-06 34.1 12.0 104 46-159 34-139 (168)
149 CHL00033 ycf3 photosystem I as 96.3 0.096 2.1E-06 35.0 9.8 91 16-107 35-138 (168)
150 KOG2047 mRNA splicing factor [ 96.3 0.31 6.7E-06 39.5 13.5 90 3-94 156-293 (835)
151 KOG4340 Uncharacterized conser 96.3 0.14 3.1E-06 37.6 10.8 110 3-114 96-210 (459)
152 PF05843 Suf: Suppressor of fo 96.3 0.15 3.2E-06 37.4 11.1 97 48-162 2-99 (280)
153 KOG0547 Translocase of outer m 96.3 0.056 1.2E-06 42.1 9.0 125 19-162 363-491 (606)
154 PRK10803 tol-pal system protei 96.3 0.088 1.9E-06 38.2 9.8 95 18-112 145-247 (263)
155 KOG2796 Uncharacterized conser 96.3 0.27 5.9E-06 35.6 11.9 123 50-174 180-325 (366)
156 PF13424 TPR_12: Tetratricopep 96.2 0.017 3.8E-07 33.2 5.1 63 48-110 6-74 (78)
157 KOG2376 Signal recognition par 96.2 0.28 6.1E-06 39.2 12.7 135 18-159 48-201 (652)
158 PF14938 SNAP: Soluble NSF att 96.2 0.063 1.4E-06 39.3 8.8 141 3-144 99-261 (282)
159 KOG0495 HAT repeat protein [RN 96.2 0.55 1.2E-05 38.3 14.7 150 24-176 693-859 (913)
160 KOG3785 Uncharacterized conser 96.2 0.094 2E-06 39.4 9.4 82 89-173 400-499 (557)
161 KOG1173 Anaphase-promoting com 96.1 0.062 1.3E-06 42.4 8.8 124 3-129 398-534 (611)
162 KOG3616 Selective LIM binding 96.1 0.086 1.9E-06 43.4 9.7 125 24-159 740-876 (1636)
163 PF13424 TPR_12: Tetratricopep 96.1 0.044 9.6E-07 31.4 6.2 67 83-161 6-74 (78)
164 PF12569 NARP1: NMDA receptor- 96.1 0.57 1.2E-05 37.5 14.4 133 16-167 143-296 (517)
165 PF13281 DUF4071: Domain of un 96.1 0.45 9.8E-06 36.3 15.1 142 19-162 144-334 (374)
166 PF13371 TPR_9: Tetratricopept 96.0 0.045 9.7E-07 30.9 6.0 58 55-113 3-60 (73)
167 PF14938 SNAP: Soluble NSF att 96.0 0.4 8.7E-06 35.1 12.5 149 19-178 78-245 (282)
168 PF13170 DUF4003: Protein of u 95.8 0.11 2.4E-06 38.3 8.8 128 46-173 59-222 (297)
169 KOG0553 TPR repeat-containing 95.8 0.28 6.1E-06 35.9 10.4 101 56-176 90-190 (304)
170 cd00923 Cyt_c_Oxidase_Va Cytoc 95.8 0.077 1.7E-06 32.0 6.3 63 62-126 22-85 (103)
171 PF02284 COX5A: Cytochrome c o 95.7 0.076 1.6E-06 32.3 6.1 61 64-126 27-88 (108)
172 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.17 3.6E-06 39.3 9.4 62 15-76 74-141 (453)
173 KOG1128 Uncharacterized conser 95.7 0.17 3.7E-06 41.3 9.6 33 132-164 552-584 (777)
174 PRK10153 DNA-binding transcrip 95.6 0.27 5.8E-06 39.3 10.7 116 2-119 359-491 (517)
175 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.6 1.3E-05 36.5 11.7 127 16-161 397-530 (660)
176 KOG1125 TPR repeat-containing 95.4 0.23 5E-06 39.4 9.4 94 14-109 428-525 (579)
177 KOG1915 Cell cycle control pro 95.4 0.61 1.3E-05 36.6 11.4 144 2-162 383-536 (677)
178 PF10602 RPN7: 26S proteasome 95.3 0.54 1.2E-05 31.9 10.1 102 48-161 37-141 (177)
179 PF13371 TPR_9: Tetratricopept 95.3 0.059 1.3E-06 30.4 4.6 54 24-77 3-59 (73)
180 PF07079 DUF1347: Protein of u 95.1 0.7 1.5E-05 36.0 10.8 144 26-180 16-179 (549)
181 KOG0495 HAT repeat protein [RN 95.1 1.6 3.4E-05 35.9 13.5 169 3-175 602-794 (913)
182 KOG2053 Mitochondrial inherita 95.0 0.37 8E-06 40.3 9.7 101 26-129 19-122 (932)
183 PF13762 MNE1: Mitochondrial s 95.0 0.61 1.3E-05 30.5 10.1 98 73-181 28-128 (145)
184 PRK14720 transcript cleavage f 94.9 2.1 4.6E-05 36.6 14.8 146 14-162 29-198 (906)
185 KOG3785 Uncharacterized conser 94.9 0.46 1E-05 35.9 9.2 89 21-112 398-491 (557)
186 COG3629 DnrI DNA-binding trans 94.9 0.54 1.2E-05 34.4 9.4 76 85-177 156-236 (280)
187 KOG1174 Anaphase-promoting com 94.8 1.4 3E-05 34.1 12.2 146 15-161 231-396 (564)
188 COG3629 DnrI DNA-binding trans 94.7 0.84 1.8E-05 33.4 10.1 80 49-129 155-239 (280)
189 KOG0553 TPR repeat-containing 94.7 0.45 9.7E-06 34.9 8.6 98 26-127 91-192 (304)
190 COG4235 Cytochrome c biogenesi 94.6 1.2 2.7E-05 32.6 12.4 111 46-176 155-268 (287)
191 PF13176 TPR_7: Tetratricopept 94.6 0.11 2.4E-06 25.0 3.9 26 135-160 1-26 (36)
192 PF00637 Clathrin: Region in C 94.6 0.013 2.9E-07 38.1 0.7 117 53-179 13-136 (143)
193 COG4235 Cytochrome c biogenesi 94.6 0.88 1.9E-05 33.3 9.8 99 15-114 155-259 (287)
194 PF10300 DUF3808: Protein of u 94.5 0.57 1.2E-05 37.0 9.5 108 2-110 250-375 (468)
195 PF13176 TPR_7: Tetratricopept 94.1 0.19 4.1E-06 24.2 4.1 26 49-74 1-26 (36)
196 KOG1156 N-terminal acetyltrans 94.0 2.8 6.1E-05 34.2 12.9 136 14-160 367-509 (700)
197 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 0.43 9.3E-06 37.1 7.7 64 46-111 74-141 (453)
198 KOG4570 Uncharacterized conser 93.9 0.37 8E-06 35.8 6.8 93 15-111 63-164 (418)
199 PF07035 Mic1: Colon cancer-as 93.8 1.4 2.9E-05 29.7 12.3 90 67-160 14-116 (167)
200 PF04184 ST7: ST7 protein; In 93.8 1.7 3.7E-05 34.4 10.4 138 21-161 264-430 (539)
201 PF09205 DUF1955: Domain of un 93.6 1.2 2.7E-05 28.8 8.7 65 83-164 87-151 (161)
202 PF13428 TPR_14: Tetratricopep 93.4 0.47 1E-05 23.9 5.1 28 135-162 3-30 (44)
203 PF09205 DUF1955: Domain of un 93.4 1.4 3E-05 28.6 8.2 68 46-114 85-152 (161)
204 PF13929 mRNA_stabil: mRNA sta 93.4 2.1 4.6E-05 31.4 9.8 107 29-135 141-256 (292)
205 KOG1127 TPR repeat-containing 93.3 0.87 1.9E-05 38.9 8.7 51 19-69 495-548 (1238)
206 KOG0985 Vesicle coat protein c 93.3 0.73 1.6E-05 39.6 8.3 139 14-159 1131-1305(1666)
207 KOG4077 Cytochrome c oxidase, 93.3 0.64 1.4E-05 29.6 6.2 60 65-125 67-126 (149)
208 PF13512 TPR_18: Tetratricopep 93.1 1.6 3.5E-05 28.5 9.2 71 57-127 20-92 (142)
209 COG1729 Uncharacterized protei 92.9 2.7 5.8E-05 30.5 10.5 95 49-162 144-244 (262)
210 PF10300 DUF3808: Protein of u 92.9 3.4 7.3E-05 32.8 11.2 127 18-160 231-374 (468)
211 KOG2053 Mitochondrial inherita 92.8 5.5 0.00012 33.8 14.8 86 14-102 40-130 (932)
212 PF13374 TPR_10: Tetratricopep 92.7 0.4 8.6E-06 23.4 4.2 29 134-162 3-31 (42)
213 KOG3060 Uncharacterized conser 92.5 2.8 6.1E-05 30.3 9.3 111 2-113 103-222 (289)
214 PRK15331 chaperone protein Sic 92.4 0.79 1.7E-05 30.7 6.2 89 22-111 43-134 (165)
215 PF13525 YfiO: Outer membrane 92.4 2.6 5.7E-05 29.2 11.1 136 21-162 10-170 (203)
216 PF13170 DUF4003: Protein of u 92.3 0.8 1.7E-05 33.9 6.8 121 3-123 80-223 (297)
217 smart00299 CLH Clathrin heavy 91.8 1.5 3.3E-05 28.2 7.1 122 47-179 7-136 (140)
218 PF13428 TPR_14: Tetratricopep 91.8 0.72 1.6E-05 23.2 4.4 28 49-76 3-30 (44)
219 PRK04841 transcriptional regul 91.8 5.8 0.00013 34.0 12.2 129 19-161 494-640 (903)
220 PF04053 Coatomer_WDAD: Coatom 91.7 5.5 0.00012 31.4 11.8 120 17-159 296-428 (443)
221 PF13929 mRNA_stabil: mRNA sta 91.6 3.7 8E-05 30.2 9.3 124 2-125 145-286 (292)
222 PRK10866 outer membrane biogen 91.6 3.8 8.2E-05 29.4 15.7 54 23-76 39-98 (243)
223 smart00299 CLH Clathrin heavy 91.4 2.6 5.6E-05 27.1 11.8 85 18-109 9-96 (140)
224 PF13374 TPR_10: Tetratricopep 91.4 0.81 1.8E-05 22.2 4.4 28 48-75 3-30 (42)
225 PF00637 Clathrin: Region in C 91.4 0.022 4.7E-07 37.0 -2.0 120 22-148 13-140 (143)
226 PF13512 TPR_18: Tetratricopep 91.2 3 6.4E-05 27.3 8.8 75 20-95 14-95 (142)
227 COG4649 Uncharacterized protei 91.1 3.5 7.7E-05 28.1 9.5 132 19-167 62-201 (221)
228 KOG1156 N-terminal acetyltrans 90.9 7.8 0.00017 31.8 14.0 94 83-178 144-262 (700)
229 KOG1125 TPR repeat-containing 90.9 7.3 0.00016 31.4 13.3 82 26-108 295-379 (579)
230 PF04184 ST7: ST7 protein; In 90.9 6.2 0.00014 31.4 10.3 76 52-127 264-341 (539)
231 PF11663 Toxin_YhaV: Toxin wit 90.8 0.36 7.7E-06 31.1 3.1 32 146-179 108-139 (140)
232 PF08631 SPO22: Meiosis protei 90.6 5.2 0.00011 29.3 11.7 148 2-159 104-272 (278)
233 PF13281 DUF4071: Domain of un 90.6 6.4 0.00014 30.2 12.8 108 46-161 140-254 (374)
234 PF07079 DUF1347: Protein of u 90.6 7.2 0.00016 30.8 11.0 128 2-130 23-180 (549)
235 PRK04841 transcriptional regul 90.6 10 0.00022 32.5 13.6 93 18-110 533-640 (903)
236 COG4700 Uncharacterized protei 90.5 4.4 9.5E-05 28.1 12.9 100 14-115 87-193 (251)
237 PRK15331 chaperone protein Sic 90.4 3.9 8.5E-05 27.4 8.6 92 52-162 42-134 (165)
238 PF09613 HrpB1_HrpK: Bacterial 90.3 3.9 8.4E-05 27.3 9.7 70 23-94 17-89 (160)
239 PF10602 RPN7: 26S proteasome 90.3 3.1 6.7E-05 28.3 7.6 93 18-110 38-141 (177)
240 KOG4162 Predicted calmodulin-b 90.2 10 0.00022 31.8 13.0 125 19-162 653-783 (799)
241 PF04053 Coatomer_WDAD: Coatom 90.1 4.7 0.0001 31.8 9.3 113 21-153 323-435 (443)
242 KOG4570 Uncharacterized conser 89.8 2.4 5.1E-05 31.7 6.9 99 46-162 63-164 (418)
243 KOG3617 WD40 and TPR repeat-co 89.4 6.3 0.00014 33.6 9.7 26 17-42 758-783 (1416)
244 PF00515 TPR_1: Tetratricopept 89.3 1.3 2.9E-05 20.5 4.2 29 134-162 2-30 (34)
245 COG5107 RNA14 Pre-mRNA 3'-end 89.2 2.3 5E-05 33.4 6.8 76 82-157 397-490 (660)
246 KOG1127 TPR repeat-containing 89.2 9 0.0002 33.3 10.6 108 3-111 510-625 (1238)
247 PF13762 MNE1: Mitochondrial s 89.0 4.8 0.0001 26.4 9.1 77 19-95 42-128 (145)
248 KOG0037 Ca2+-binding protein, 88.5 6.2 0.00013 27.7 7.9 107 46-161 92-204 (221)
249 KOG2796 Uncharacterized conser 88.5 3.6 7.9E-05 30.1 7.0 107 15-124 211-326 (366)
250 PRK10866 outer membrane biogen 88.4 7.5 0.00016 27.9 13.6 66 46-113 31-100 (243)
251 KOG1174 Anaphase-promoting com 88.2 11 0.00024 29.5 14.6 48 56-104 343-390 (564)
252 COG1729 Uncharacterized protei 88.0 5.8 0.00013 28.8 7.9 93 18-111 144-244 (262)
253 PRK10564 maltose regulon perip 87.3 1.6 3.5E-05 32.2 4.8 46 132-177 256-301 (303)
254 PF10366 Vps39_1: Vacuolar sor 87.3 1.6 3.5E-05 27.1 4.2 28 134-161 40-67 (108)
255 TIGR03504 FimV_Cterm FimV C-te 87.2 1.6 3.5E-05 22.2 3.5 23 88-110 5-27 (44)
256 PF14669 Asp_Glu_race_2: Putat 87.1 6.8 0.00015 27.2 7.3 57 50-106 135-205 (233)
257 PF12688 TPR_5: Tetratrico pep 87.1 5.7 0.00012 25.1 11.4 102 22-129 7-118 (120)
258 PF07721 TPR_4: Tetratricopept 87.1 1.4 3.1E-05 19.3 3.0 20 21-40 6-25 (26)
259 KOG0276 Vesicle coat complex C 87.1 11 0.00024 30.9 9.4 125 18-159 616-747 (794)
260 PF11848 DUF3368: Domain of un 86.9 2.9 6.4E-05 21.6 4.8 35 143-177 12-46 (48)
261 KOG0543 FKBP-type peptidyl-pro 86.2 14 0.0003 28.6 9.8 89 24-113 216-322 (397)
262 PF11207 DUF2989: Protein of u 85.9 9.4 0.0002 26.6 7.7 42 60-101 153-197 (203)
263 KOG2376 Signal recognition par 85.8 18 0.00039 29.6 15.9 134 32-180 357-504 (652)
264 COG3118 Thioredoxin domain-con 85.8 12 0.00027 27.7 10.5 84 25-108 143-229 (304)
265 KOG2280 Vacuolar assembly/sort 85.0 3.8 8.3E-05 34.1 6.2 86 18-109 686-771 (829)
266 PF00515 TPR_1: Tetratricopept 85.0 2.7 5.8E-05 19.4 4.4 28 48-75 2-29 (34)
267 TIGR03504 FimV_Cterm FimV C-te 84.9 2.4 5.3E-05 21.5 3.5 29 139-167 5-33 (44)
268 KOG2280 Vacuolar assembly/sort 84.6 8.6 0.00019 32.2 8.0 50 55-108 692-741 (829)
269 KOG0548 Molecular co-chaperone 84.0 18 0.00038 29.1 9.2 82 25-108 11-96 (539)
270 PRK10564 maltose regulon perip 84.0 3.2 6.9E-05 30.7 5.0 38 49-86 259-296 (303)
271 KOG4162 Predicted calmodulin-b 83.9 25 0.00054 29.7 12.5 61 14-74 321-384 (799)
272 COG0735 Fur Fe2+/Zn2+ uptake r 83.8 9.9 0.00021 24.9 7.7 63 68-131 7-69 (145)
273 cd08326 CARD_CASP9 Caspase act 83.6 4.7 0.0001 23.7 4.8 34 28-61 42-75 (84)
274 KOG0548 Molecular co-chaperone 83.5 15 0.00032 29.5 8.6 90 2-92 19-114 (539)
275 PRK09687 putative lyase; Provi 83.3 16 0.00034 26.9 17.0 125 46-180 141-279 (280)
276 COG4455 ImpE Protein of avirul 83.2 13 0.00028 26.5 7.4 54 20-73 5-61 (273)
277 KOG0991 Replication factor C, 82.9 15 0.00033 26.5 8.2 59 34-94 226-284 (333)
278 PF13431 TPR_17: Tetratricopep 82.6 1.5 3.2E-05 20.8 2.0 22 132-153 12-33 (34)
279 KOG1538 Uncharacterized conser 82.4 21 0.00046 29.7 9.2 102 45-163 745-847 (1081)
280 PF11848 DUF3368: Domain of un 82.0 5.4 0.00012 20.6 5.0 29 96-124 16-44 (48)
281 PF02259 FAT: FAT domain; Int 82.0 19 0.00041 26.9 12.2 140 22-163 4-176 (352)
282 PF07719 TPR_2: Tetratricopept 82.0 3.7 8E-05 18.7 4.2 28 135-162 3-30 (34)
283 PF13174 TPR_6: Tetratricopept 81.9 1.7 3.8E-05 19.7 2.2 24 139-162 6-29 (33)
284 KOG2041 WD40 repeat protein [G 81.4 26 0.00057 29.6 9.5 17 30-46 748-764 (1189)
285 PRK14700 recombination factor 81.2 20 0.00044 26.7 9.2 95 49-143 125-228 (300)
286 TIGR02508 type_III_yscG type I 81.2 10 0.00022 23.3 6.2 28 26-53 49-76 (115)
287 PF13181 TPR_8: Tetratricopept 81.1 4.1 8.9E-05 18.6 4.1 27 135-161 3-29 (34)
288 PF11663 Toxin_YhaV: Toxin wit 80.6 2.1 4.5E-05 27.7 2.7 31 60-92 108-138 (140)
289 KOG2114 Vacuolar assembly/sort 80.5 14 0.00029 31.5 7.7 81 26-109 378-458 (933)
290 PF14689 SPOB_a: Sensor_kinase 80.3 3.1 6.6E-05 22.9 3.0 26 137-162 27-52 (62)
291 PF11846 DUF3366: Domain of un 80.3 13 0.00027 25.5 6.8 23 139-161 150-172 (193)
292 COG4455 ImpE Protein of avirul 80.0 14 0.00031 26.3 6.7 75 49-124 3-79 (273)
293 KOG1538 Uncharacterized conser 79.9 5.9 0.00013 32.7 5.5 91 16-113 747-848 (1081)
294 KOG3617 WD40 and TPR repeat-co 79.7 40 0.00087 29.2 11.4 145 2-160 817-994 (1416)
295 COG4700 Uncharacterized protei 79.5 18 0.0004 25.2 12.8 68 45-112 87-154 (251)
296 PRK09687 putative lyase; Provi 78.8 24 0.00051 26.0 13.9 88 7-96 28-119 (280)
297 PF13646 HEAT_2: HEAT repeats; 78.8 10 0.00022 21.8 7.8 61 13-74 11-71 (88)
298 KOG4555 TPR repeat-containing 78.5 16 0.00034 23.9 7.7 91 24-114 51-147 (175)
299 PF07575 Nucleopor_Nup85: Nup8 78.3 8.2 0.00018 31.5 6.1 142 32-176 390-538 (566)
300 PRK14956 DNA polymerase III su 78.3 33 0.00072 27.5 10.4 103 64-171 183-286 (484)
301 COG1466 HolA DNA polymerase II 78.3 27 0.00058 26.4 9.5 93 70-169 150-244 (334)
302 PF09454 Vps23_core: Vps23 cor 77.7 10 0.00022 21.1 4.9 52 42-94 3-54 (65)
303 TIGR02561 HrpB1_HrpK type III 77.5 18 0.00039 24.0 8.4 19 58-76 55-73 (153)
304 PF07163 Pex26: Pex26 protein; 77.4 26 0.00057 25.9 9.6 92 52-156 88-181 (309)
305 cd08819 CARD_MDA5_2 Caspase ac 77.2 11 0.00023 22.4 4.8 37 59-100 48-84 (88)
306 PF11846 DUF3366: Domain of un 77.0 17 0.00036 24.9 6.6 53 59-111 120-173 (193)
307 PRK13342 recombination factor 77.0 33 0.00072 26.8 12.3 112 63-176 153-273 (413)
308 cd00280 TRFH Telomeric Repeat 76.8 22 0.00047 24.6 8.0 94 62-160 84-184 (200)
309 PF14689 SPOB_a: Sensor_kinase 76.8 5.6 0.00012 21.8 3.4 45 31-75 5-51 (62)
310 KOG2063 Vacuolar assembly/sort 76.6 50 0.0011 28.7 13.3 27 18-44 506-532 (877)
311 COG5108 RPO41 Mitochondrial DN 76.4 19 0.0004 30.2 7.3 49 52-100 33-83 (1117)
312 COG4649 Uncharacterized protei 76.1 23 0.00049 24.4 7.3 114 2-115 75-200 (221)
313 KOG2114 Vacuolar assembly/sort 75.9 48 0.0011 28.5 9.6 116 21-144 339-458 (933)
314 PRK14958 DNA polymerase III su 75.4 42 0.00091 27.2 11.0 92 73-170 191-282 (509)
315 PF11768 DUF3312: Protein of u 75.3 39 0.00086 27.4 8.7 104 49-160 410-521 (545)
316 KOG0543 FKBP-type peptidyl-pro 75.3 36 0.00079 26.4 9.7 104 56-178 217-334 (397)
317 cd08332 CARD_CASP2 Caspase act 75.2 11 0.00023 22.5 4.6 27 31-57 49-75 (90)
318 smart00028 TPR Tetratricopepti 74.9 5.6 0.00012 16.9 3.2 27 135-161 3-29 (34)
319 PF13525 YfiO: Outer membrane 74.9 25 0.00054 24.3 13.1 60 54-113 12-73 (203)
320 PF02847 MA3: MA3 domain; Int 74.7 17 0.00037 22.3 6.7 22 52-73 7-28 (113)
321 smart00638 LPD_N Lipoprotein N 72.9 51 0.0011 27.0 14.3 108 14-124 308-418 (574)
322 PRK15180 Vi polysaccharide bio 72.8 15 0.00033 29.4 5.9 95 14-111 323-420 (831)
323 KOG2041 WD40 repeat protein [G 72.2 61 0.0013 27.6 11.9 40 2-43 680-719 (1189)
324 TIGR02561 HrpB1_HrpK type III 71.5 27 0.00058 23.2 11.3 101 58-162 21-122 (153)
325 COG3947 Response regulator con 71.1 33 0.00072 25.7 6.9 58 50-108 282-339 (361)
326 COG3898 Uncharacterized membra 70.9 49 0.0011 26.0 14.9 30 88-117 269-298 (531)
327 PRK08691 DNA polymerase III su 70.9 65 0.0014 27.3 9.9 99 64-168 181-280 (709)
328 PRK14962 DNA polymerase III su 70.5 54 0.0012 26.3 10.8 67 50-117 247-319 (472)
329 KOG0403 Neoplastic transformat 69.0 58 0.0013 26.0 8.3 72 20-95 513-587 (645)
330 PF02607 B12-binding_2: B12 bi 68.6 11 0.00025 21.4 3.6 39 58-96 12-50 (79)
331 COG2812 DnaX DNA polymerase II 67.9 65 0.0014 26.2 11.1 103 63-171 180-283 (515)
332 cd08323 CARD_APAF1 Caspase act 67.9 23 0.00049 21.0 4.8 32 28-59 40-71 (86)
333 COG5108 RPO41 Mitochondrial DN 67.9 56 0.0012 27.6 8.2 91 20-110 32-131 (1117)
334 PF11207 DUF2989: Protein of u 67.8 39 0.00085 23.6 7.9 65 64-129 123-190 (203)
335 KOG2908 26S proteasome regulat 67.0 42 0.0009 25.6 6.8 62 23-84 82-157 (380)
336 PF07035 Mic1: Colon cancer-as 66.6 37 0.00081 22.9 12.0 92 12-109 25-116 (167)
337 PRK07452 DNA polymerase III su 66.6 52 0.0011 24.6 10.0 93 70-170 140-236 (326)
338 KOG0276 Vesicle coat complex C 66.1 64 0.0014 26.9 8.1 48 25-74 646-693 (794)
339 COG3118 Thioredoxin domain-con 65.4 55 0.0012 24.4 12.1 111 15-129 167-284 (304)
340 PF12926 MOZART2: Mitotic-spin 65.2 27 0.00058 20.8 5.2 44 68-111 29-72 (88)
341 PRK06585 holA DNA polymerase I 64.9 58 0.0013 24.6 9.8 94 71-168 153-246 (343)
342 PF09613 HrpB1_HrpK: Bacterial 64.9 40 0.00086 22.6 12.3 103 56-162 19-122 (160)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 64.9 30 0.00064 21.2 6.5 58 101-176 26-84 (103)
344 TIGR03581 EF_0839 conserved hy 64.1 31 0.00068 24.4 5.4 79 31-109 136-235 (236)
345 PRK13341 recombination factor 63.7 94 0.002 26.6 12.0 110 64-176 171-301 (725)
346 PF14840 DNA_pol3_delt_C: Proc 63.7 10 0.00023 24.1 3.0 28 146-173 10-37 (125)
347 PRK11639 zinc uptake transcrip 63.6 43 0.00092 22.6 8.0 58 73-131 17-74 (169)
348 COG3947 Response regulator con 62.9 40 0.00086 25.3 6.0 67 19-85 282-356 (361)
349 COG4105 ComL DNA uptake lipopr 62.5 58 0.0012 23.7 13.1 133 25-162 43-196 (254)
350 cd00280 TRFH Telomeric Repeat 62.5 49 0.0011 22.9 7.5 56 98-162 85-140 (200)
351 PF01475 FUR: Ferric uptake re 62.4 34 0.00073 21.3 5.2 46 86-131 11-56 (120)
352 PRK07764 DNA polymerase III su 61.9 1.1E+02 0.0023 26.7 10.6 99 64-167 182-281 (824)
353 KOG0550 Molecular chaperone (D 61.8 73 0.0016 25.1 7.5 82 29-110 216-315 (486)
354 KOG2066 Vacuolar assembly/sort 61.3 1.1E+02 0.0023 26.3 10.6 27 135-161 507-533 (846)
355 KOG2582 COP9 signalosome, subu 60.8 76 0.0017 24.6 7.5 112 1-112 199-346 (422)
356 KOG4567 GTPase-activating prot 60.6 72 0.0015 24.2 8.8 81 67-158 263-343 (370)
357 TIGR02508 type_III_yscG type I 60.4 38 0.00082 20.9 6.7 17 57-73 49-65 (115)
358 smart00804 TAP_C C-terminal do 60.1 9.9 0.00021 21.0 2.1 23 146-168 38-61 (63)
359 PF03745 DUF309: Domain of unk 60.0 27 0.00059 19.1 4.5 48 57-104 9-61 (62)
360 cd08810 CARD_BCL10 Caspase act 59.9 29 0.00062 20.5 4.1 33 26-59 40-72 (84)
361 cd07153 Fur_like Ferric uptake 59.7 39 0.00084 20.8 5.4 47 53-99 6-52 (116)
362 KOG1920 IkappaB kinase complex 59.6 1.2E+02 0.0026 27.4 9.1 82 19-109 896-992 (1265)
363 PRK06645 DNA polymerase III su 58.7 98 0.0021 25.1 10.2 102 64-169 190-293 (507)
364 PF10366 Vps39_1: Vacuolar sor 58.2 42 0.00091 20.7 8.7 55 20-75 3-67 (108)
365 PRK15180 Vi polysaccharide bio 58.1 97 0.0021 25.2 7.7 87 27-114 300-389 (831)
366 PF10579 Rapsyn_N: Rapsyn N-te 58.1 32 0.00069 20.1 4.0 45 59-103 18-64 (80)
367 cd07153 Fur_like Ferric uptake 58.0 34 0.00073 21.1 4.6 44 88-131 6-49 (116)
368 PF08311 Mad3_BUB1_I: Mad3/BUB 57.7 47 0.001 21.1 7.8 73 33-107 50-124 (126)
369 PRK14951 DNA polymerase III su 56.6 1.2E+02 0.0026 25.4 9.9 99 64-168 186-285 (618)
370 PRK09462 fur ferric uptake reg 56.6 53 0.0012 21.4 7.9 59 72-131 7-66 (148)
371 KOG4555 TPR repeat-containing 56.6 54 0.0012 21.5 10.1 94 55-163 51-145 (175)
372 TIGR01914 cas_Csa4 CRISPR-asso 56.5 69 0.0015 24.4 6.4 67 57-128 286-352 (354)
373 PRK11906 transcriptional regul 54.8 1.1E+02 0.0024 24.5 11.0 126 2-129 275-420 (458)
374 COG4105 ComL DNA uptake lipopr 54.8 81 0.0018 23.0 7.2 71 82-167 35-106 (254)
375 KOG0991 Replication factor C, 54.7 82 0.0018 23.0 10.4 112 57-177 169-281 (333)
376 PF04190 DUF410: Protein of un 54.7 81 0.0018 23.0 10.3 75 92-167 151-244 (260)
377 PRK14963 DNA polymerase III su 54.1 1.2E+02 0.0026 24.7 10.7 98 64-168 178-276 (504)
378 KOG4648 Uncharacterized conser 53.9 86 0.0019 24.2 6.6 46 56-103 106-152 (536)
379 KOG1586 Protein required for f 53.9 84 0.0018 22.9 10.2 146 25-171 23-192 (288)
380 PF08631 SPO22: Meiosis protei 53.4 87 0.0019 22.9 13.5 104 49-169 86-193 (278)
381 COG3898 Uncharacterized membra 53.1 1.1E+02 0.0024 24.1 13.0 85 83-167 189-297 (531)
382 cd08326 CARD_CASP9 Caspase act 53.0 46 0.00099 19.6 5.1 59 38-100 21-79 (84)
383 COG5210 GTPase-activating prot 52.9 1.2E+02 0.0026 24.4 9.9 102 67-168 362-481 (496)
384 PF04090 RNA_pol_I_TF: RNA pol 52.3 79 0.0017 22.1 10.4 116 48-164 42-170 (199)
385 COG1747 Uncharacterized N-term 52.1 1.3E+02 0.0029 24.6 11.9 145 15-162 65-234 (711)
386 PF14669 Asp_Glu_race_2: Putat 51.9 21 0.00046 24.9 3.0 54 19-72 135-206 (233)
387 PF07443 HARP: HepA-related pr 51.8 4.8 0.00011 21.6 0.0 32 61-92 6-37 (55)
388 PRK07914 hypothetical protein; 51.7 1E+02 0.0022 23.1 9.2 93 71-170 139-232 (320)
389 COG2178 Predicted RNA-binding 51.4 82 0.0018 22.0 5.9 96 14-110 27-149 (204)
390 PF11817 Foie-gras_1: Foie gra 50.8 91 0.002 22.4 7.7 21 53-73 184-204 (247)
391 COG2405 Predicted nucleic acid 50.8 46 0.00099 21.8 4.2 45 82-127 110-154 (157)
392 PRK11639 zinc uptake transcrip 50.5 76 0.0016 21.4 6.0 66 35-100 13-78 (169)
393 KOG2063 Vacuolar assembly/sort 50.1 1.8E+02 0.0039 25.6 9.0 127 49-179 506-637 (877)
394 PF02184 HAT: HAT (Half-A-TPR) 49.9 29 0.00062 16.3 2.8 25 148-174 2-26 (32)
395 cd08329 CARD_BIRC2_BIRC3 Caspa 49.6 56 0.0012 19.6 4.6 15 62-76 52-66 (94)
396 KOG0624 dsRNA-activated protei 48.7 1.3E+02 0.0027 23.4 11.1 158 4-163 174-371 (504)
397 PF01475 FUR: Ferric uptake re 48.6 40 0.00087 21.0 3.9 42 137-178 11-52 (120)
398 smart00386 HAT HAT (Half-A-TPR 48.6 25 0.00054 15.3 3.5 29 147-176 1-29 (33)
399 PRK05563 DNA polymerase III su 48.5 1.5E+02 0.0033 24.4 10.3 98 64-167 181-279 (559)
400 cd08819 CARD_MDA5_2 Caspase ac 47.7 60 0.0013 19.4 6.7 48 65-114 20-67 (88)
401 PRK14963 DNA polymerase III su 47.7 1.4E+02 0.003 24.3 7.5 33 49-82 244-276 (504)
402 KOG2223 Uncharacterized conser 47.6 1.4E+02 0.0031 23.8 7.5 45 68-112 460-504 (586)
403 KOG4279 Serine/threonine prote 46.8 45 0.00098 28.5 4.6 116 46-177 200-332 (1226)
404 PF02847 MA3: MA3 domain; Int 46.5 66 0.0014 19.6 7.3 60 20-79 6-69 (113)
405 PF13925 Katanin_con80: con80 46.3 88 0.0019 20.9 5.9 20 23-42 21-40 (164)
406 KOG2297 Predicted translation 45.4 1.4E+02 0.0029 22.8 9.1 68 59-131 267-335 (412)
407 PRK13342 recombination factor 45.3 1.5E+02 0.0032 23.2 14.0 95 49-143 229-332 (413)
408 COG4003 Uncharacterized protei 45.3 49 0.0011 19.4 3.4 28 139-166 37-65 (98)
409 PF02284 COX5A: Cytochrome c o 45.3 74 0.0016 19.7 8.7 59 101-176 29-87 (108)
410 KOG0686 COP9 signalosome, subu 44.9 1.6E+02 0.0034 23.4 11.7 154 18-176 152-352 (466)
411 PF12796 Ank_2: Ankyrin repeat 44.2 61 0.0013 18.5 5.6 80 26-116 4-86 (89)
412 PF04097 Nic96: Nup93/Nic96; 43.9 1.2E+02 0.0026 25.3 6.8 48 132-180 110-157 (613)
413 PRK09857 putative transposase; 43.6 1.4E+02 0.0029 22.3 8.6 67 85-168 209-275 (292)
414 cd08330 CARD_ASC_NALP1 Caspase 43.5 66 0.0014 18.7 4.7 28 30-57 43-70 (82)
415 KOG2214 Predicted esterase of 43.5 1.3E+02 0.0029 24.4 6.5 110 70-179 193-327 (543)
416 PF13934 ELYS: Nuclear pore co 43.3 1.2E+02 0.0026 21.6 8.8 88 19-110 79-168 (226)
417 PF09670 Cas_Cas02710: CRISPR- 43.1 1.4E+02 0.003 23.2 6.7 56 55-111 139-198 (379)
418 PRK13341 recombination factor 42.7 2.2E+02 0.0048 24.5 8.3 63 53-115 261-331 (725)
419 PRK14953 DNA polymerase III su 42.4 1.8E+02 0.004 23.5 9.7 101 64-170 181-282 (486)
420 PF10474 DUF2451: Protein of u 41.9 1.3E+02 0.0028 21.6 6.5 66 105-178 108-188 (234)
421 PF14840 DNA_pol3_delt_C: Proc 41.8 39 0.00084 21.6 3.0 29 58-86 8-36 (125)
422 KOG1585 Protein required for f 41.6 1.4E+02 0.0031 22.0 9.3 24 132-156 227-250 (308)
423 KOG2610 Uncharacterized conser 41.3 1.7E+02 0.0036 22.7 9.9 132 29-160 116-274 (491)
424 COG3294 HD supefamily hydrolas 41.3 24 0.00052 25.2 2.1 20 151-170 68-87 (269)
425 PF11084 DUF2621: Protein of u 40.5 74 0.0016 20.5 3.9 75 33-116 61-135 (141)
426 PRK14950 DNA polymerase III su 40.5 2.1E+02 0.0046 23.7 10.4 91 75-171 194-284 (585)
427 cd01671 CARD Caspase activatio 39.8 71 0.0015 18.0 4.5 31 62-96 42-72 (80)
428 COG5159 RPN6 26S proteasome re 39.7 1.6E+02 0.0036 22.2 10.9 35 138-172 130-168 (421)
429 cd04402 RhoGAP_ARHGAP20 RhoGAP 39.7 57 0.0012 22.4 3.8 53 37-93 75-132 (192)
430 PF11123 DNA_Packaging_2: DNA 39.0 78 0.0017 18.2 4.2 31 30-60 11-44 (82)
431 PF10475 DUF2450: Protein of u 38.8 1.6E+02 0.0035 21.8 10.5 27 49-75 129-155 (291)
432 PF07304 SRA1: Steroid recepto 38.8 1E+02 0.0022 20.6 4.7 51 62-112 69-120 (157)
433 PRK07632 ribonucleotide-diphos 38.6 2.5E+02 0.0054 24.0 7.8 30 144-173 128-157 (699)
434 COG0735 Fur Fe2+/Zn2+ uptake r 38.3 1.1E+02 0.0025 19.9 6.4 51 47-97 20-70 (145)
435 PRK07003 DNA polymerase III su 38.0 2.8E+02 0.006 24.3 10.8 98 64-167 181-279 (830)
436 PF07575 Nucleopor_Nup85: Nup8 37.8 43 0.00094 27.4 3.4 69 7-75 396-466 (566)
437 PLN03025 replication factor C 37.5 1.7E+02 0.0038 21.8 11.3 106 61-173 159-264 (319)
438 PRK14962 DNA polymerase III su 37.4 2.2E+02 0.0048 22.9 11.6 102 64-171 179-281 (472)
439 PF14853 Fis1_TPR_C: Fis1 C-te 37.3 67 0.0015 17.0 4.2 35 139-175 7-41 (53)
440 PF11817 Foie-gras_1: Foie gra 37.2 1.6E+02 0.0034 21.2 6.6 64 85-159 181-244 (247)
441 COG2256 MGS1 ATPase related to 36.8 2.1E+02 0.0046 22.6 12.3 82 46-127 245-335 (436)
442 PF04124 Dor1: Dor1-like famil 36.7 65 0.0014 24.4 4.0 43 132-174 105-148 (338)
443 PRK11906 transcriptional regul 36.4 2.3E+02 0.0049 22.8 13.9 126 17-161 252-400 (458)
444 COG2405 Predicted nucleic acid 36.4 1.1E+02 0.0023 20.2 4.2 32 145-176 121-152 (157)
445 KOG2908 26S proteasome regulat 36.2 2E+02 0.0044 22.2 7.8 79 50-128 78-167 (380)
446 smart00164 TBC Domain in Tre-2 35.5 1.4E+02 0.003 20.3 5.2 79 62-144 108-194 (199)
447 cd08789 CARD_IPS-1_RIG-I Caspa 35.4 95 0.0021 18.2 5.7 48 49-101 34-81 (84)
448 PF09477 Type_III_YscG: Bacter 35.4 1.1E+02 0.0025 19.1 7.9 79 62-163 21-99 (116)
449 PF10475 DUF2450: Protein of u 35.1 1.1E+02 0.0023 22.7 4.8 83 19-102 130-217 (291)
450 PRK05629 hypothetical protein; 34.9 1.9E+02 0.0042 21.6 9.9 93 70-169 136-229 (318)
451 PF15469 Sec5: Exocyst complex 34.8 1.5E+02 0.0032 20.1 6.8 114 49-171 59-177 (182)
452 cd08315 Death_TRAILR_DR4_DR5 D 34.5 1.1E+02 0.0023 18.5 6.8 48 117-164 48-95 (96)
453 cd08785 CARD_CARD9-like Caspas 34.4 73 0.0016 18.9 3.1 40 38-77 21-63 (86)
454 PF04762 IKI3: IKI3 family; I 34.3 3.4E+02 0.0073 24.2 8.8 27 50-76 815-843 (928)
455 PRK12402 replication factor C 34.3 2E+02 0.0042 21.4 10.4 98 64-167 187-286 (337)
456 PF12169 DNA_pol3_gamma3: DNA 33.9 91 0.002 19.9 3.9 25 146-170 27-51 (143)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 33.8 1.3E+02 0.0028 19.1 8.2 81 61-159 40-125 (126)
458 KOG1130 Predicted G-alpha GTPa 33.6 88 0.0019 24.9 4.1 38 83-121 16-55 (639)
459 PF08424 NRDE-2: NRDE-2, neces 33.4 2.1E+02 0.0046 21.5 13.7 126 33-168 48-190 (321)
460 PF05944 Phage_term_smal: Phag 33.4 1.4E+02 0.003 19.4 5.0 46 119-165 31-80 (132)
461 COG2987 HutU Urocanate hydrata 32.9 44 0.00095 26.5 2.5 22 149-170 241-262 (561)
462 PRK14952 DNA polymerase III su 32.9 2.9E+02 0.0063 23.0 10.7 99 64-167 180-279 (584)
463 PF08542 Rep_fac_C: Replicatio 32.8 1E+02 0.0022 17.8 4.3 43 51-95 9-51 (89)
464 cd04403 RhoGAP_ARHGAP27_15_12_ 32.7 1.2E+02 0.0026 20.7 4.5 54 37-94 79-137 (187)
465 cd08325 CARD_CASP1-like Caspas 32.5 78 0.0017 18.5 3.1 15 62-76 46-60 (83)
466 PF06552 TOM20_plant: Plant sp 32.2 1.7E+02 0.0038 20.2 5.2 87 18-112 30-137 (186)
467 KOG2214 Predicted esterase of 32.2 2.8E+02 0.0061 22.7 6.8 114 50-170 211-352 (543)
468 PF08343 RNR_N: Ribonucleotide 32.2 27 0.00057 20.5 1.0 41 136-176 4-46 (82)
469 PF10255 Paf67: RNA polymerase 31.7 1.9E+02 0.0042 22.8 5.8 55 20-74 126-191 (404)
470 PRK09111 DNA polymerase III su 31.6 3.1E+02 0.0067 23.0 10.3 98 65-168 195-293 (598)
471 PF00619 CARD: Caspase recruit 31.3 86 0.0019 17.9 3.2 14 62-75 45-58 (85)
472 PF09868 DUF2095: Uncharacteri 31.2 98 0.0021 19.6 3.4 25 139-163 67-91 (128)
473 PF06957 COPI_C: Coatomer (COP 31.0 2.1E+02 0.0046 22.7 5.9 20 143-162 214-233 (422)
474 PRK14970 DNA polymerase III su 30.7 2.5E+02 0.0053 21.5 11.3 88 73-167 180-268 (367)
475 PF05664 DUF810: Protein of un 30.6 3.4E+02 0.0075 23.2 8.0 85 75-172 210-306 (677)
476 smart00668 CTLH C-terminal to 30.5 75 0.0016 16.5 2.6 23 140-162 8-30 (58)
477 cd08812 CARD_RIG-I_like Caspas 30.5 73 0.0016 18.8 2.7 41 56-100 43-84 (88)
478 PF12862 Apc5: Anaphase-promot 30.4 1.2E+02 0.0026 17.9 6.0 55 57-111 8-70 (94)
479 TIGR01428 HAD_type_II 2-haloal 30.3 1.3E+02 0.0027 20.4 4.3 41 75-115 71-111 (198)
480 PRK13184 pknD serine/threonine 30.3 4E+02 0.0087 23.8 10.9 132 14-162 686-833 (932)
481 smart00638 LPD_N Lipoprotein N 30.2 3.1E+02 0.0067 22.5 13.2 66 44-114 307-372 (574)
482 PF13934 ELYS: Nuclear pore co 30.2 2E+02 0.0044 20.4 7.9 58 49-111 78-137 (226)
483 cd04377 RhoGAP_myosin_IX RhoGA 30.1 1E+02 0.0023 21.0 3.9 53 38-94 77-134 (186)
484 cd08327 CARD_RAIDD Caspase act 29.9 1.3E+02 0.0028 18.1 6.0 30 28-57 47-76 (94)
485 COG0320 LipA Lipoate synthase 29.9 66 0.0014 23.8 2.8 65 46-114 179-243 (306)
486 KOG3024 Uncharacterized conser 29.7 2.4E+02 0.0053 21.1 11.0 122 46-169 126-288 (312)
487 PRK06305 DNA polymerase III su 29.5 3E+02 0.0064 22.0 10.1 98 64-167 183-281 (451)
488 KOG0550 Molecular chaperone (D 29.4 2.1E+02 0.0046 22.8 5.5 83 25-111 258-350 (486)
489 KOG1585 Protein required for f 29.2 2.4E+02 0.0052 20.9 7.4 47 85-131 193-242 (308)
490 PF04124 Dor1: Dor1-like famil 28.8 90 0.0019 23.7 3.6 24 87-110 111-134 (338)
491 PF12069 DUF3549: Protein of u 28.7 2.7E+02 0.0059 21.4 12.8 131 24-160 174-309 (340)
492 PF13646 HEAT_2: HEAT repeats; 28.5 1.2E+02 0.0026 17.1 8.3 64 43-111 10-73 (88)
493 PF07875 Coat_F: Coat F domain 28.5 1.1E+02 0.0023 16.7 4.2 34 132-167 29-62 (64)
494 cd04374 RhoGAP_Graf RhoGAP_Gra 28.4 1.3E+02 0.0028 21.0 4.1 53 37-94 95-153 (203)
495 COG2987 HutU Urocanate hydrata 28.2 88 0.0019 25.0 3.4 47 61-120 217-263 (561)
496 PF01347 Vitellogenin_N: Lipop 28.0 3.5E+02 0.0076 22.4 9.6 61 18-79 348-410 (618)
497 TIGR01228 hutU urocanate hydra 27.9 69 0.0015 25.8 2.8 48 94-170 206-253 (545)
498 cd04406 RhoGAP_myosin_IXA RhoG 27.8 2E+02 0.0044 19.6 5.0 53 38-94 77-134 (186)
499 PF14162 YozD: YozD-like prote 27.6 1E+02 0.0023 16.2 3.7 29 150-178 12-48 (57)
500 PF03943 TAP_C: TAP C-terminal 27.6 28 0.00061 18.2 0.5 23 146-168 26-49 (51)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=255.32 Aligned_cols=168 Identities=30% Similarity=0.511 Sum_probs=163.5
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
||..+|+++|++|++.|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 56667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------chHhHHHHHHHHHHcCChhHHHHHHHH
Q 038237 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
+.|++++|.++++.|.+.|+.||..+|++|+++|++.| |+.+||+||.+|++.|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHhhhccC
Q 038237 159 MLRASIKPDEVAYVGVLSARTHN 181 (181)
Q Consensus 159 m~~~~~~p~~~t~~~li~~~~~~ 181 (181)
|.+.|+.||..||+++|.+|+++
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-37 Score=252.02 Aligned_cols=179 Identities=20% Similarity=0.302 Sum_probs=132.9
Q ss_pred ccHHHHhhhcC------CCChhHHHHHHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMK------NKDVISYTAIVSGYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (181)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+ |+..+|+++|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45666666663 26666677777777777777777777776653 456677777777777777777777777
Q ss_pred HHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------------c
Q 038237 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------------V 132 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------------~ 132 (181)
+|.+.|+.||..+|++++++|++.|++++|.++++.|.+.|+.||..+|++||.+|++.| |
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 777777777777777777777777777777777777777777777777777777777666 7
Q ss_pred hHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 133 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
..+||+||.+|++.|++++|+++|++|...|+.||..||++||.+|++
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 788888888888888888888888888888888888888888888875
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.8e-37 Score=250.59 Aligned_cols=179 Identities=20% Similarity=0.326 Sum_probs=135.2
Q ss_pred ccHHHHhhhcCC----CChhHHHHHHHHHhccCCHHHHHHHhcccC----CCcHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMP----ERDYVLWTTMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 2 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (181)
++|+++|+.|.+ ||..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|+++|++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456677777653 677777777777777777777777777776 367777777777777777777777777777
Q ss_pred HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH--cCCCcchHHHHHHHHHhHhcC-------------------c
Q 038237 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK--NKVKNDIFAGNALIDMYCKCT-------------------V 132 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~-------------------~ 132 (181)
.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.| +
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 7777777777777777777777777777777777765 467777777777777777766 5
Q ss_pred hHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 133 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
..+||.+|.+|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 577777777777777777777777777777777777777777777765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=239.01 Aligned_cols=179 Identities=27% Similarity=0.477 Sum_probs=172.4
Q ss_pred ccHHHHhhhcC----CCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 2 GFTLEIFGTMK----NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 2 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
+.|.+++..|. .||..+|+.++++|++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 45677777775 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------chHhHHHHHHH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVG 142 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~~~~li~~ 142 (181)
+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+++|++.| |+++||+||.+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~ 299 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|++.|++++|+++|++|.+.|+.||..||++++++|++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999986
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-35 Score=242.90 Aligned_cols=167 Identities=34% Similarity=0.526 Sum_probs=161.3
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
||+.+|+++|.+|++.|++++|.++|++|+.+|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 45566688888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------chHhHHHHHHHHHHcCChhHHHHHHHH
Q 038237 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
+.|+++.+.+++..+.+.|+.||..+||+|+.+|++.| |..+||++|.+|++.|++++|+++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHhhhcc
Q 038237 159 MLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 159 m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|.+.|+.||..||++++.+|++
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhc
Confidence 9999999999999999999976
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-35 Score=241.65 Aligned_cols=179 Identities=29% Similarity=0.556 Sum_probs=151.8
Q ss_pred cHHHHhhhcCC----CChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 3 FTLEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 3 ~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
.|.+++..|.. ||..+|+++|.+|++.|++++|.++|++|..||.++||++|.+|++.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 34444444432 67778888888888888888899999999888888999999999999999999999999988888
Q ss_pred CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------------------
Q 038237 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------------------------- 131 (181)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------------------- 131 (181)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 88888888888888888888888888888888888887777777777777665
Q ss_pred --------------------------------------------------------------------------------
Q 038237 132 -------------------------------------------------------------------------------- 131 (181)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (181)
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence
Q ss_pred -------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhccC
Q 038237 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181 (181)
Q Consensus 132 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 181 (181)
|+.+||+||.+|++.|+.++|+++|++|.+.|+.||.+||+.+|.+|+++
T Consensus 546 ~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 34669999999999999999999999999999999999999999999864
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.72 E-value=2.2e-17 Score=88.60 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=46.0
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|+.+||++|++|++.|++++|.++|++|++.|++||..||++||++|++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6778888888888899999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=1.3e-16 Score=85.63 Aligned_cols=50 Identities=32% Similarity=0.603 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998875
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.3e-14 Score=102.82 Aligned_cols=168 Identities=13% Similarity=0.162 Sum_probs=142.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
++.+....+..+|.++|.++||-...+.|.+++++-.. -+..+||.+|.+..-... .+++.+|....++||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 34444445778999999999999999999999999885 377888888887654433 7899999999999999
Q ss_pred HHHHHHHHHHHccCCcch----HHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------------------
Q 038237 83 FTIVSILTARANLGALEL----GEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------------------------- 131 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------------------- 131 (181)
.|+|+++.+..+.|+++. |.+++.+|++-|++|...+|-.+|.-+++.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998876 4678889999999999999999999888765
Q ss_pred -------------------------------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 132 -------------------------------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 132 -------------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
..+.|.-+....++....+..+.+|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 4556778888888999999999999999988888999
Q ss_pred hhHHHHHhhh
Q 038237 169 VAYVGVLSAR 178 (181)
Q Consensus 169 ~t~~~li~~~ 178 (181)
.+...++++.
T Consensus 434 ~~m~~~lrA~ 443 (625)
T KOG4422|consen 434 QTMIHLLRAL 443 (625)
T ss_pred hhHHHHHHHH
Confidence 9998888864
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=1.1e-12 Score=99.43 Aligned_cols=173 Identities=10% Similarity=0.033 Sum_probs=109.0
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCCC--c------HHHHHHHHHHHHhcCcHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPER--D------YVLWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~------~~~~~~li~~~~~~~~~~~a~~~~ 70 (181)
++|+++|+++.+ ++..++..+...+.+.|++++|.+.++.+.+. + ...+..+...+.+.|++++|.+.|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355666666543 34456666667777777777777776666431 1 113445555666667777777777
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----------------ch
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------------VK 133 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------~~ 133 (181)
+++.+.. +.+...+..+...+.+.|++++|...++++...+......+++.+...|.+.| +.
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 7766543 12344566666777777777777777777776543333455666666666655 33
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
..++.+...+.+.|++++|.++++++.+. .|+..+++.++..
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 44567777777777888888877777664 5777777766654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.46 E-value=1e-11 Score=94.04 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=58.9
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCCC-------cHHHHHHHHHHHHhcCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPER-------DYVLWTTMIDGYLRVNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (181)
++|++.|.++.. | +..++..+...+.+.|++++|..+++.+... ....+..+...|.+.|++++|.++|+
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555555543 3 2334555556666666666666666555431 11345555555666666666666666
Q ss_pred HHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
++.+.. +++..++..+...+.+.|++++|...++.+.+.+
T Consensus 132 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 132 QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 655431 2244555555555666666666666555555543
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=3.1e-10 Score=93.61 Aligned_cols=174 Identities=11% Similarity=0.064 Sum_probs=120.0
Q ss_pred cHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 3 FTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 3 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
+|.++++.+.+ ++...+..+...+.+.|++++|.+.|+.+.. |+..++..+...+.+.|++++|.+.++++.+..
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444444432 2344555556666666666666666666543 444556666667777777777777777766643
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----------------chHhHHHHH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------------VKFTWTTMI 140 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------~~~~~~~li 140 (181)
+.+...+..+...+.+.|++++|...|+.+.+... .+...++.+...+...+ +...+..+.
T Consensus 767 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 767 -PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred -CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 34567777777888888888888888888887653 36667777776666554 556677888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
..+.+.|++++|.+.|+++.+.+.. +..++..+..++.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 882 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL 882 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH
Confidence 8889999999999999999987543 7788877777654
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.28 E-value=5.2e-10 Score=92.26 Aligned_cols=157 Identities=9% Similarity=-0.037 Sum_probs=91.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+..+...+.+.|++++|..+|+.+.+ .+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHH
Confidence 344444444444444444444444432 234455555555555555555555555555443 2344555566666666
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHH
Q 038237 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
.|++++|...++.+...+. +..++..+...+.+.| +...++.+...|.+.|++++|.+.|
T Consensus 716 ~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 6777777777776666533 2345555555555554 6677777888888888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHhhh
Q 038237 157 SQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 157 ~~m~~~~~~p~~~t~~~li~~~ 178 (181)
+++.+.. +++...++.+...+
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHH
Confidence 8887653 34556666655443
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.4e-10 Score=86.12 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=99.5
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
..+..+|.+||.|.|+-...+.|.+++.+-.....+.+..++|.+|.+-.- .....++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 347789999999999999999999999999998888899999999887543 4448899999999999988888877
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhH----HHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDK----ALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
++...+ .|+++. |++++.+|++-||.|+-.+|..+|.-+.+
T Consensus 280 L~c~ak----------------fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 280 LSCAAK----------------FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HHHHHH----------------hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 776666 787764 57899999999999999999999986553
No 15
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.7e-10 Score=56.23 Aligned_cols=31 Identities=35% Similarity=0.693 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHhcccC
Q 038237 13 NKDVISYTAIVSGYINREQVDIARQCFDQMP 43 (181)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 43 (181)
.||..||+++|++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4666666666666666666666666666663
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.06 E-value=1.6e-10 Score=56.33 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=17.3
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYI 108 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (181)
|+.||..||+++|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.04 E-value=4.7e-10 Score=55.03 Aligned_cols=35 Identities=40% Similarity=0.724 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.99 E-value=9.7e-10 Score=53.62 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=32.1
Q ss_pred hHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038237 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166 (181)
Q Consensus 133 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 166 (181)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999998
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.97 E-value=1.5e-08 Score=73.77 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=88.3
Q ss_pred ccHHHHhhhcCCC---ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 2 GFTLEIFGTMKNK---DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 2 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+.|++.|+++... ++..+..++.. ...+++++|.+++...-+ ++...+...+..+.+.++++++.++++.....
T Consensus 61 ~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 139 (280)
T PF13429_consen 61 DEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL 139 (280)
T ss_dssp ----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4566666666542 33356666666 678888888888776643 56677788888888999999999999997753
Q ss_pred C-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHH
Q 038237 77 N-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWT 137 (181)
Q Consensus 77 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~ 137 (181)
. .+++...|..+...+.+.|+.++|...+++..+..+. |....+.++..+...| |...|.
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 3 4567778888888889999999999999999887543 5666777777777665 667788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.+..++...|+.++|+.+|++.... .+.|......+.+++
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccccc-ccccccccccccccc
Confidence 9999999999999999999998774 223555555544443
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.90 E-value=2.7e-09 Score=52.27 Aligned_cols=35 Identities=40% Similarity=0.614 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36889999999999999999999999998988873
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.90 E-value=4.1e-08 Score=78.83 Aligned_cols=165 Identities=10% Similarity=0.082 Sum_probs=98.1
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHhcccCC----------------------------CcHHHHHHHHHHHHhcCcH
Q 038237 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPE----------------------------RDYVLWTTMIDGYLRVNRF 63 (181)
Q Consensus 12 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------------------~~~~~~~~li~~~~~~~~~ 63 (181)
..||.+||.++|.-||..|+++.|- +|..|+- |...+|..|..+|..+||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 3599999999999999999999998 8888851 3667999999999999986
Q ss_pred HH---HHHHHHHHH----HcCC-----------------CccHHH----------HHHHHHHHHcc------C-------
Q 038237 64 RE---ALTLFQEIQ----TSNI-----------------MGDEFT----------IVSILTARANL------G------- 96 (181)
Q Consensus 64 ~~---a~~~~~~m~----~~~~-----------------~p~~~~----------~~~l~~~~~~~------~------- 96 (181)
.. ..+.++... ..|+ -||..+ |..++.-..+. +
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr 179 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR 179 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence 44 333222211 1222 122211 11111111000 0
Q ss_pred ----CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------------chHhHHHHHHHHHHcCChhHHH
Q 038237 97 ----ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------------VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 97 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~ 153 (181)
+....+++....+.....|+..++..+++.-...| +.+.|..++-+ .++...+.
T Consensus 180 qnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e 256 (1088)
T KOG4318|consen 180 QNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFE 256 (1088)
T ss_pred HhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHH
Confidence 11112222222222212366666666666555544 23333444433 66777888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 154 DMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 154 ~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
.+++-|.+.||.|+..|+.--+..|..
T Consensus 257 ~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 257 FVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 888889999999999998877666543
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.88 E-value=1e-06 Score=61.38 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...+..+...+.+.|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+..- .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 34567777888888888888888887653 2456677777788888888888888888776532 2445666677777
Q ss_pred HccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~ 153 (181)
...|++++|...++........ .....+..+...+...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887764322 22334444444454444 4556778888888899999999
Q ss_pred HHHHHHHHcCCCCChhhHHH
Q 038237 154 DMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 154 ~~~~~m~~~~~~p~~~t~~~ 173 (181)
+.+++.... .+++...+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~ 208 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWL 208 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHH
Confidence 999999876 2334444433
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.84 E-value=6.9e-09 Score=50.52 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (181)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.80 E-value=1e-06 Score=71.39 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=15.9
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+...+..+...+.+.|++++|.+.|+++..
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444455555555555555555555554
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.79 E-value=3.5e-08 Score=71.78 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=88.8
Q ss_pred ccHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccC-----CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMP-----ERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
++|.+++...-+ +++..+..++..+.+.++++++.++++... .++...|..+...+.+.|+.++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555554432 566677888888889999999988888854 2467778888888889999999999999987
Q ss_pred HcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHh
Q 038237 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFT 135 (181)
Q Consensus 75 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~ 135 (181)
+.. | |......++..+...|+.+++..+++...+.. +.|...+..+-.+|...| |...
T Consensus 174 ~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 ELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 753 5 46777788888888899888888888887764 445556677777776655 7888
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
...+.+++.+.|+.++|.++.++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 88888999999999999999988754
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.77 E-value=1.3e-06 Score=60.84 Aligned_cols=160 Identities=11% Similarity=0.028 Sum_probs=118.8
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|.+.+++... | +...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.|++...
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 456666665543 4 455678888899999999999999987764 3566778888888999999999999999876
Q ss_pred cCC-CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhH
Q 038237 76 SNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTW 136 (181)
Q Consensus 76 ~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~ 136 (181)
... ......+..+...+...|++++|...+++..+.... +...+..+...+...| +...+
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 432 223456667777888899999999999988876432 3455666666666555 45566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+...+...|+.++|..+.+.+...
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 67777888899999999988887653
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.75 E-value=1.6e-06 Score=70.31 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=16.0
Q ss_pred hHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 133 KFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 133 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
...+..+...+.+.|++++|...+++...
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455555555555556666555555554
No 28
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.73 E-value=1.4e-08 Score=48.24 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
++||++|.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999875
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.73 E-value=5.3e-08 Score=78.18 Aligned_cols=133 Identities=17% Similarity=0.138 Sum_probs=92.9
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC------------------------CccHHHHHHHHHHHHccCCcc
Q 038237 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI------------------------MGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------------~p~~~~~~~l~~~~~~~~~~~ 99 (181)
.|+.+||.++|.-||..|+.+.|- +|.-|+.... .|...||..|..+|.+.||+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 478899999999999999999998 8877765433 366677888888888887754
Q ss_pred h---HHHHHHHHHH----cCC-----------------Ccch----------HHHHHHHHHhHhcC--------------
Q 038237 100 L---GEWIKTYIDK----NKV-----------------KNDI----------FAGNALIDMYCKCT-------------- 131 (181)
Q Consensus 100 ~---a~~~~~~~~~----~~~-----------------~~~~----------~~~~~ll~~~~~~~-------------- 131 (181)
. +++-+..+.. .|+ -||. ..|..++....+.+
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrq 180 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQ 180 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHH
Confidence 4 2221211111 111 1111 11222222222211
Q ss_pred ----------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 132 ----------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 132 ----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
+..+|.+.+++-..+|+.+.|..++.+|+++|++.+.+-|-.|+-+
T Consensus 181 nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 8889999999999999999999999999999999999888777655
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.70 E-value=3.6e-06 Score=64.38 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=122.2
Q ss_pred ccHHHHhhhcCC--CChhHHH--HHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISYT--AIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+.|.++|.++.+ |+..... .....+...|+.+.|.+.++.+.+ .++.....+...|.+.|++++|.+++..+.
T Consensus 135 ~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 135 ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777777664 5543333 335677788999999888888875 367778888889999999999998888887
Q ss_pred HcCCCc-----------------------------------------cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 75 TSNIMG-----------------------------------------DEFTIVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 75 ~~~~~p-----------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
+.+..+ +......+..++.+.|+.++|..++++..+...
T Consensus 215 k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 215 KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 655331 222344556677788899999999888887543
Q ss_pred CcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 114 KNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
.|.... +.+....+ |...+.++-..+.+.+++++|.+.|+...+. .|+..++..+-
T Consensus 295 ~~~l~~----l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 295 DERLVL----LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred CHHHHH----HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 332211 11111112 7777888999999999999999999999974 69988877776
Q ss_pred hhhc
Q 038237 176 SART 179 (181)
Q Consensus 176 ~~~~ 179 (181)
..+.
T Consensus 369 ~~~~ 372 (398)
T PRK10747 369 DALD 372 (398)
T ss_pred HHHH
Confidence 6543
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.70 E-value=2.5e-06 Score=68.76 Aligned_cols=159 Identities=11% Similarity=-0.098 Sum_probs=123.7
Q ss_pred ccHHHHhhhcCC-----C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN-----K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQE 72 (181)
Q Consensus 2 ~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (181)
++|++.|++... | +...|..+...+...|++++|...|+...+ | +...|..+...+...|++++|...|++
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356666665542 3 334577777888899999999999998864 3 455788888888999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chH
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKF 134 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~ 134 (181)
..+.. +-+...|..+...+...|++++|...|++..+.... +...+..+-..+.+.| +..
T Consensus 391 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 391 ALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 87753 234678888888899999999999999998876433 4555555656665555 677
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|+.+-..+...|++++|.+.|++....
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 8888999999999999999999998764
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.68 E-value=3.6e-06 Score=67.85 Aligned_cols=94 Identities=3% Similarity=-0.172 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
.+|..+...+...|++++|.+.|++... | +...+..+...+.+.|++++|+..|++..+.. +-+...++.+-..+.
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3444444444555555555555544432 1 33344444455555555555555555544321 112344555555555
Q ss_pred ccCCcchHHHHHHHHHHc
Q 038237 94 NLGALELGEWIKTYIDKN 111 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~ 111 (181)
..|++++|...|+.....
T Consensus 479 ~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HccCHHHHHHHHHHHHhc
Confidence 555555555555555443
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.66 E-value=2.6e-06 Score=71.51 Aligned_cols=98 Identities=6% Similarity=-0.208 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------- 131 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 131 (181)
|++++|...|++..+. .|+...+..+-..+.+.|+.++|...++........ +...++.+-..+...|
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555554432 234444555555555555555555555555544322 2233333333333333
Q ss_pred ---------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 ---------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+...+..+-.++...|++++|+..|++..+
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 444555555555555555555555555544
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=98.65 E-value=3.2e-06 Score=67.32 Aligned_cols=126 Identities=6% Similarity=-0.103 Sum_probs=86.7
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|.+.+++..+ | +...+..+-..+...|++++|...|++..+ | +...+..+-..+...|++++|...+++..+
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 356666666553 4 555677777888889999999999998764 4 566788888888999999999999999877
Q ss_pred cCCCccH-HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 76 SNIMGDE-FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 76 ~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
.. |+. ..+..+...+...|++++|...+++......+-+...+..+-..+..
T Consensus 401 l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 401 LD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred cC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 53 432 22333444566678899999998887765322233334444444444
No 35
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.64 E-value=2.7e-07 Score=56.67 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCC-CcchHHHHHHHHHhHhcC-chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCKCT-VKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
.-|..|...+++.....+|+.+++.|+ .|++.+|+.++.+-+++. |. ..-.++.-+.+.+|++|...++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~---------~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS---------EDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc---------hhHHHHHHHHHHHHHHHHHhcc
Confidence 344455555666666666666666666 666666666666655432 11 1113455678899999999999
Q ss_pred CCChhhHHHHHhhhcc
Q 038237 165 KPDEVAYVGVLSARTH 180 (181)
Q Consensus 165 ~p~~~t~~~li~~~~~ 180 (181)
+|+..||+.++.+..+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987643
No 36
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.62 E-value=5.3e-08 Score=46.22 Aligned_cols=30 Identities=33% Similarity=0.777 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.58 E-value=2.2e-05 Score=60.26 Aligned_cols=176 Identities=10% Similarity=-0.011 Sum_probs=111.1
Q ss_pred cHHHHhhhcCC--CChh--HHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--KDVI--SYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.|.++|.+..+ |+.. ..-.....+.+.|+++.|.+.++.+.+ | +..+...+...+...|++++|.+++..+.+
T Consensus 136 ~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 136 RANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44555554322 3332 233345666667777777777777664 2 555666777777777777777777666665
Q ss_pred cCCC------------------------------------c-----cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 76 SNIM------------------------------------G-----DEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 76 ~~~~------------------------------------p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
.++. | +...+..+...+...|+.+.|..++++..+....
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd 295 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD 295 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Confidence 5431 2 4455556666777788999999999888876443
Q ss_pred cchHHHHHHHHHhHhc-------------------C-ch--HhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 038237 115 NDIFAGNALIDMYCKC-------------------T-VK--FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172 (181)
Q Consensus 115 ~~~~~~~~ll~~~~~~-------------------~-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 172 (181)
.....+. ++..+... + |. ....++-..+.+.|++++|.+.|+........||..++.
T Consensus 296 ~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 296 DRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred cccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 3211101 22211111 1 55 666788888999999999999999766555679998888
Q ss_pred HHHhhhc
Q 038237 173 GVLSART 179 (181)
Q Consensus 173 ~li~~~~ 179 (181)
.+...+.
T Consensus 375 ~La~ll~ 381 (409)
T TIGR00540 375 MAADAFD 381 (409)
T ss_pred HHHHHHH
Confidence 7765543
No 38
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.56 E-value=1.7e-06 Score=53.18 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHccCC--------cchHHHHHHHHHHcCCCcchHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSILTARANLGA--------LELGEWIKTYIDKNKVKNDIFA 119 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 119 (181)
+-...|..+...++++....+|+.+++.|+ .|+..+|+.++++.++..- +.....+++.|...+.+|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777777999999999999999999 9999999999999987542 3356788999999999999999
Q ss_pred HHHHHHHhHh
Q 038237 120 GNALIDMYCK 129 (181)
Q Consensus 120 ~~~ll~~~~~ 129 (181)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 39
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.56 E-value=1.7e-06 Score=65.91 Aligned_cols=119 Identities=14% Similarity=0.038 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTS--NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
+......+++......+++++..++.+.... ....-..|.+++++.|.+.|..+.+..++..=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 6667788888888888888899888888764 23233345569999999999999999999999999999988888888
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|+.+.+ .|++..|.++.-.|..++...+..|+..-+.+|.+
T Consensus 145 md~fl~----------------~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLK----------------KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhh----------------cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 877777 99999999999999999888888998888888754
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.53 E-value=2.5e-05 Score=62.30 Aligned_cols=159 Identities=11% Similarity=-0.036 Sum_probs=112.7
Q ss_pred ccHHHHhhhcCC--CCh-hHHHHHHHHHh---------ccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHH
Q 038237 2 GFTLEIFGTMKN--KDV-ISYTAIVSGYI---------NREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREA 66 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~-~~~~~li~~~~---------~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a 66 (181)
++|++.|++..+ |+. ..|..+-.++. ..++.++|...+++..+ .+..++..+-..+...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 467778887665 543 34544443332 34558899999988875 3777888888888899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------------- 131 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------- 131 (181)
...|++..+.+ +-+...+..+-..+...|++++|...++...+....+....+. +...+...|
T Consensus 358 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~-~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 358 SLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT-KLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH-HHHHHHhccCHHHHHHHHHHHHHh
Confidence 99999998864 2245677888889999999999999999998875442222222 222222222
Q ss_pred ----chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 ----VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+..+-..+...|+.++|.+.++++...
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 3445677777888999999999999887654
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.49 E-value=3.7e-05 Score=64.85 Aligned_cols=157 Identities=13% Similarity=-0.019 Sum_probs=109.9
Q ss_pred cHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 3 FTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
+|...|.+-.. |+......+...+.+.|++++|...|+.+.. ++...+..+...+.+.|++++|.+.+++..+..
T Consensus 494 eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~- 572 (987)
T PRK09782 494 VALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG- 572 (987)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 45554444332 5544333344455688999999999887664 444556666777888899999999998887754
Q ss_pred CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHH
Q 038237 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMI 140 (181)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li 140 (181)
+++...+..+.....+.|++++|...+++..+.. |+...|..+-..+.+.| +...++.+-
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2222333333344455699999999998888764 45667777777777766 677788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHc
Q 038237 141 VGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+...|++++|.+.+++..+.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8889999999999999988774
No 42
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.45 E-value=1.8e-06 Score=59.35 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHc-----cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--chHhHHHHHHHHHHcCChhHHH
Q 038237 81 DEFTIVSILTARAN-----LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 81 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~li~~~~~~~~~~~a~ 153 (181)
|..+|..+++.+.+ .|..+-....+..|.+.|++-|..+|+.||+.+=+.. ....+-++.-.| -.+-+-|+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hy--p~Qq~c~i 123 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHY--PRQQECAI 123 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccC--cHHHHHHH
Confidence 44444444444432 2334444445555555555555555555555554321 111222222222 33667799
Q ss_pred HHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 154 DMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 154 ~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
+++++|...||-||..|+..|++.|.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 999999999999999999999998875
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.43 E-value=6e-05 Score=55.42 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=106.9
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+|...|++..+ | +...|+.+-..+.+.|++++|.+.|+...+ | +..+|..+...+...|++++|.+.|+...+.
T Consensus 82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45555555432 4 456788888888889999999888888864 3 5667777888888889999999998887764
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------------------chH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------------------VKF 134 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~ 134 (181)
. |+..............++.++|...++...... .|+...+. +...+.... ...
T Consensus 162 ~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 162 D--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWN-IVEFYLGKISEETLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred C--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHH-HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3 443322222333445677888888886654332 22211111 111110000 335
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 172 (181)
.|..+-..+.+.|+.++|...|++....+ +||.+-+.
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 68888899999999999999999998764 34544443
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.42 E-value=1.8e-05 Score=68.18 Aligned_cols=152 Identities=12% Similarity=0.056 Sum_probs=100.0
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
++|+++++.- .++...+..+-..+.+.|+.++|.+.|+...+ .+..++..+...+...|++++|.+.++...+..
T Consensus 590 ~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 3456666532 23445666777788888888888888887764 366778888888888888888888888766532
Q ss_pred CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHH
Q 038237 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
+-+...+..+..++.+.|++++|.++++.+............+. ..+..+...+.+.|++++|++.|++
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a-----------~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESA-----------LVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhH-----------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12334455566777788888888888888876532211111111 1222334455569999999999999
Q ss_pred HHHc-CCCC
Q 038237 159 MLRA-SIKP 166 (181)
Q Consensus 159 m~~~-~~~p 166 (181)
.... |+.|
T Consensus 737 Al~~~~~~~ 745 (1157)
T PRK11447 737 AMVASGITP 745 (1157)
T ss_pred HHhhcCCCC
Confidence 9753 4543
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=7.2e-06 Score=64.26 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH---H
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS---I 88 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l 88 (181)
.+.+|+++-++|+-.++.+.|++.|+...+- ...+|+.+-.-+.....+|+|...|..-.. .|...|++ +
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGl 495 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGL 495 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhh
Confidence 6778999999999999999999999998863 556777777777777888888888887655 45555554 4
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChh
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGD 150 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~ 150 (181)
-..|.+.+.++.|+-.|+...+-+.. +.+....+...+-+.| |...---....+...++.+
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 45677888888888888887766544 3333333333333332 3333333445556688999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH
Q 038237 151 KALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 151 ~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
+|+..++++++ +.|+..+-..|
T Consensus 575 eal~~LEeLk~--~vP~es~v~~l 596 (638)
T KOG1126|consen 575 EALQELEELKE--LVPQESSVFAL 596 (638)
T ss_pred HHHHHHHHHHH--hCcchHHHHHH
Confidence 99999999887 45665544443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.40 E-value=6.6e-05 Score=57.52 Aligned_cols=159 Identities=14% Similarity=0.001 Sum_probs=114.8
Q ss_pred cHHHHhhhcCC--CChhHHHHH-HHHHhccCCHHHHHHHhcccCC--CcHHHHH--HHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--KDVISYTAI-VSGYINREQVDIARQCFDQMPE--RDYVLWT--TMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+|++.+...++ +++..+..+ ..+..+.|+.+.|.+.+.++.+ |+..... .....+...|++++|.+.+++..+
T Consensus 102 ~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~ 181 (398)
T PRK10747 102 QVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE 181 (398)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45666665444 233444333 4555899999999999999986 4443333 335678889999999999999988
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchH-------HHHHHHHHhHhc------------------
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF-------AGNALIDMYCKC------------------ 130 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~------------------ 130 (181)
.. +-+...+..+...+.+.|+++++..++..+.+.+..++.. .|..++......
T Consensus 182 ~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 182 VA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred cC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 65 3366888899999999999999999999999986653221 222222221111
Q ss_pred CchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 131 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+....-.+...+.+.|+.++|.+++++..+.
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 16667788889999999999999999999874
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.40 E-value=7.7e-05 Score=61.79 Aligned_cols=159 Identities=8% Similarity=-0.066 Sum_probs=91.4
Q ss_pred ccHHHHhhhcCCC---Chh-HHHHHHHHHhccCCHHHHHHHhcccCCCc-------HHHHHHHHHHHHhcCcHHHHHHHH
Q 038237 2 GFTLEIFGTMKNK---DVI-SYTAIVSGYINREQVDIARQCFDQMPERD-------YVLWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 2 ~~a~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~~~~~~a~~~~ 70 (181)
++|+..|+++... ++. .-..+...+...|++++|...|+...+.+ ......+..++.+.|++++|.+.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3566666665531 111 11223556777777777777777664311 233455555667777777777777
Q ss_pred HHHHHcC-----------CCccH---HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----
Q 038237 71 QEIQTSN-----------IMGDE---FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----- 131 (181)
Q Consensus 71 ~~m~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----- 131 (181)
+.+.... -.|+. ..+..+...+...|+.++|..+++++...... +...+..+...+...|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 7766542 01221 23345556666777777777777777655322 3455555555555444
Q ss_pred -------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 -------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 -------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+...+-.....+.+.|++++|+.+++++.+
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555566666677777777777665
No 48
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.40 E-value=3.9e-06 Score=63.92 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=100.2
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC-C-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE-R-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (181)
-+......+++.+....+++.+..++-..+. | -.-|..++|..|.+.|..+++++++..=...|+=||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 4666788889999999999999888887775 2 223556999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (181)
||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998877766777777766666555
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=2.2e-05 Score=59.55 Aligned_cols=124 Identities=18% Similarity=0.077 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
-..++..+...++++.|.++|+++.+.++...-.+...+...++-.+|.+++++..+.. +-+........+.+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 45667778888999999999999998777777788888888889999999999988642 23567777777888999999
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
+.|..+.++..+.. |+. ..+|..|..+|.+.|+++.|+-.++.+-
T Consensus 251 ~lAL~iAk~av~ls--P~~---------------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS--PSE---------------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC--chh---------------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999998763 332 2345555555666999999999998873
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.35 E-value=0.00017 Score=55.54 Aligned_cols=160 Identities=11% Similarity=0.006 Sum_probs=118.2
Q ss_pred ccHHHHhhhcCC--CChhHH-HHHHHHHhccCCHHHHHHHhcccCC--CcH--HHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISY-TAIVSGYINREQVDIARQCFDQMPE--RDY--VLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+.|++.+.+..+ |++..+ -....+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|.+.++.+.
T Consensus 101 ~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356666665544 554443 3445778889999999999998743 333 233335777888999999999999999
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHH-------HHHHH-------------HHhHhcC---
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA-------GNALI-------------DMYCKCT--- 131 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll-------------~~~~~~~--- 131 (181)
+.. +-+...+..+...+.+.|+++.+...+..+.+.+..+.... +..++ ......+
T Consensus 181 ~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 181 EMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred HhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH
Confidence 875 22667888999999999999999999999999875533322 22212 1111122
Q ss_pred --chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 --VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+-.+...+.+.|+.++|.+++++..+.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 6788889999999999999999999999986
No 51
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.35 E-value=7.2e-06 Score=56.41 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=76.0
Q ss_pred HHHhccc--CCCcHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC------------
Q 038237 36 RQCFDQM--PERDYVLWTTMIDGYLRV-----NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG------------ 96 (181)
Q Consensus 36 ~~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 96 (181)
...|+.. ...+-.+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4555555 456778888888888654 678888888999999999999999999998886532
Q ss_pred ----CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 97 ----ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 97 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.-+-|..++++|...|+.||..|+..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 23457889999999999999999999999987754
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.34 E-value=4.7e-05 Score=65.76 Aligned_cols=160 Identities=11% Similarity=-0.015 Sum_probs=103.4
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... | +...+..+...+.+.|++++|...+++..+ | +...+..+...+...++.++|+..++.+..
T Consensus 478 ~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 478 AQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 456666666543 4 344566777788888888888888887643 2 333332222223333444444444333211
Q ss_pred c---------------------------------------CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcc
Q 038237 76 S---------------------------------------NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND 116 (181)
Q Consensus 76 ~---------------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 116 (181)
. ..+.+...+..+-..+.+.|+.++|...++...+.... +
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~ 636 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-N 636 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 1 12334455667777888889999999999888876433 5
Q ss_pred hHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 117 IFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 117 ~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
...+..+...|...| +...+..+...+.+.|++++|.++++++...
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 667777777776665 4555666777888899999999999998875
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.31 E-value=1.2e-05 Score=58.77 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=62.0
Q ss_pred HHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----ccCCcch
Q 038237 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA----NLGALEL 100 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~ 100 (181)
.+...|++++|.+++..- .+.......+..|.+.+|++.|.+.++.|.+.. .|. +..-+..++. -.+.+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHH
Confidence 344455555555555443 334444445555555555555555555554431 122 1112222221 1223555
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNG-DKALDMFSQMLR 161 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 161 (181)
|.-+|+++.+. +.+++.+.+.+..++...| |..+...+|......|+. +.+.+.+.+++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555554332 3344444444444444333 444444555555556766 677788888876
Q ss_pred c
Q 038237 162 A 162 (181)
Q Consensus 162 ~ 162 (181)
.
T Consensus 265 ~ 265 (290)
T PF04733_consen 265 S 265 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=5.8e-05 Score=54.92 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=86.0
Q ss_pred CccHHHHhhhcCCCChhH---HHHHHHHHhccCCHHHHHHHhcccCC-CcHH------HHHHHHHHHHhcCcHHHHHHHH
Q 038237 1 MGFTLEIFGTMKNKDVIS---YTAIVSGYINREQVDIARQCFDQMPE-RDYV------LWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~------~~~~li~~~~~~~~~~~a~~~~ 70 (181)
.|+|.++|-+|.+-|+.| .-++-+.|-+.|.++.|+++.+.+.+ ||.. +..-|-.-|..+|-++.|.++|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 378899999988755555 44677899999999999999998875 4333 3445666788889999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
..+...+.- -....--|+..|-+..+|++|.++-+++.+.+-.
T Consensus 131 ~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 131 NQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 998876532 2344556788888888899988888888776544
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.29 E-value=8.3e-05 Score=55.33 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCC-----------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPER-----------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
.++.+......+|.+.|++.....+...|.+. -..+|+.+++-....+..+.-...+++.+.+ .+-++
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p 263 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDP 263 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcCh
Confidence 45556666666666777776666666666642 1224555555555555555555555555432 12234
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH------------HHHhH-hcC-chHhHHHHHHHHHHcCC
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL------------IDMYC-KCT-VKFTWTTMIVGLAISGN 148 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~-~~~-~~~~~~~li~~~~~~~~ 148 (181)
..-..++.-+.+.|+.++|.++.++-.+.+..|+...+--- +.... +.+ +...+.+|-..|.+++.
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 44556677778888888888888888888777662221110 00000 001 67778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 149 GDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
|.+|.+.|+.-.+ ..|+..+|+.+-+++.
T Consensus 344 w~kA~~~leaAl~--~~~s~~~~~~la~~~~ 372 (400)
T COG3071 344 WGKASEALEAALK--LRPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHHHHh--cCCChhhHHHHHHHHH
Confidence 8888888884444 5788888888877664
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=9.8e-05 Score=48.38 Aligned_cols=107 Identities=9% Similarity=-0.082 Sum_probs=68.0
Q ss_pred HhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch
Q 038237 38 CFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI 117 (181)
Q Consensus 38 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (181)
+++...+-++..+..+-..+...|++++|...|+......- .+...|..+-..+.+.|++++|...|+........ +.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~ 92 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HP 92 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-Cc
Confidence 33333333444455566677777888888888887766432 35667777777777888888888888877765432 33
Q ss_pred HHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+. .+-.++.+.|++++|...|++....
T Consensus 93 ~a~~----------------~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVY----------------QTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333 3333444478888888888877663
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=7.1e-05 Score=49.04 Aligned_cols=106 Identities=8% Similarity=0.015 Sum_probs=87.8
Q ss_pred HHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 6 EIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 6 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
.+|++..+-++..+...-..+.+.|++++|...|+.... .+...|..+-..+...|++++|...|++..+.. +.+.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~ 92 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHP 92 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCc
Confidence 344444444454566778888999999999999998875 477889999999999999999999999999854 3467
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..+..+-.++.+.|+.++|...++...+..
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888999999999999999999998764
No 58
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00019 Score=54.84 Aligned_cols=141 Identities=14% Similarity=0.054 Sum_probs=114.6
Q ss_pred hccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHccCCcchHH
Q 038237 27 INREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVSILTARANLGALELGE 102 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~ 102 (181)
-..|+.++|+..++.+.. | |+..+....+-+.+.++..+|.+.++.+... .|+ ....-.+-.++.+.|++.+|.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 356778888888888764 4 6667777888999999999999999999885 466 455667788999999999999
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhHhcC-chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
.+++........ |...|..|-.+|...| ....--+--.++...|+++.|...+....+. ++++..+|
T Consensus 395 ~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 395 RILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 999998876544 8899999999999998 4566777788899999999999999998876 34444444
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00027 Score=48.91 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-HccCC--cchHHHHHHHHHHcCCCcchHHHH
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR-ANLGA--LELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
.|...|..+-..|...|++++|...|++..+..- -+...+..+-.++ ...|+ .++|..++++..+.... +..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~--- 145 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVT--- 145 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-Chh---
Confidence 3777888998899999999999999998877542 2556666666654 56666 48899999998887554 333
Q ss_pred HHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 122 ~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
.+..+-..+.+.|++++|...|+++.+. .+|+..-+
T Consensus 146 -------------al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 146 -------------ALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRT 181 (198)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHH
Confidence 3344444555699999999999999876 44554443
No 60
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.13 E-value=0.00067 Score=56.44 Aligned_cols=85 Identities=12% Similarity=-0.059 Sum_probs=38.8
Q ss_pred HHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 25 GYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
.+...|++++|.++|+++.+ | ++..+..++..+...++.++|++.+++.... .|+...+-.+...+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 44444555555555555543 1 3344444455555555555555555555443 23333332222222223333335
Q ss_pred HHHHHHHHHc
Q 038237 102 EWIKTYIDKN 111 (181)
Q Consensus 102 ~~~~~~~~~~ 111 (181)
...++++.+.
T Consensus 189 L~~~ekll~~ 198 (822)
T PRK14574 189 LQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.13 E-value=0.00018 Score=59.65 Aligned_cols=139 Identities=11% Similarity=0.038 Sum_probs=79.9
Q ss_pred cHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 3 FTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 3 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+|++++.+... .+...+..+...+.+.|++++|.++|++..+ .+...+..+...+...|++++|...+++..+.
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45555555442 2233466666666666666666666666432 24455556666666666666666666666554
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
. +.+.. +..+..++...|+.++|...+++..+.... +...+..+...+.+.|+.++|++.+
T Consensus 113 ~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-----------------~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 113 A-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-----------------TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 1 12333 555666666666666666666666665333 2223333444455578888888777
Q ss_pred HHHH
Q 038237 157 SQML 160 (181)
Q Consensus 157 ~~m~ 160 (181)
++..
T Consensus 174 ~~~~ 177 (765)
T PRK10049 174 DDAN 177 (765)
T ss_pred HhCC
Confidence 7544
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00014 Score=51.32 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=92.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
|............+.|++..|..+|++... +|..+|+.+--+|.+.|++++|..-|.+..+-... +...++.+.-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms 177 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMS 177 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHH
Confidence 444555677777888888888888888775 58888888888888888888888888887764322 44666777777
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.-.|+.+.|..++..-...+.. |..+-..|.-..+ ..|++++|.++-..-...
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~----------------~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVG----------------LQGDFREAEDIAVQELLS 231 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHh----------------hcCChHHHHhhccccccc
Confidence 77788888888888877766543 3333344443333 488999888877665443
No 63
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.00031 Score=59.92 Aligned_cols=117 Identities=13% Similarity=0.057 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC--------------
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-------------- 114 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------- 114 (181)
.|..|...|.+.+.+++|-++|+.|.+.- .-....|......+.+.++.+.|..++++..+.-.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 45566666666666666666666665531 124455556666666666666666665554432111
Q ss_pred -------cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 115 -------NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 115 -------~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
-....|-.++.+|-+ -+..|+..|+.-.++|+.+.+.++|++....++.|-.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 001122222222222 5678999999999999999999999999998887643
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00017 Score=55.06 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=105.2
Q ss_pred CccHHHHhhhcCCCChhHHHHHH---HHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 1 MGFTLEIFGTMKNKDVISYTAIV---SGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+|+|.+.|++..+.|...--++. -.+-..|++++|++.|-.+.. .++...--+...|-...+...|++++.+..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 36677777777665544322322 235567888888888877653 455555556666666667777777765544
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHH-------------HHHHHHHhH----hcCchHhHH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA-------------GNALIDMYC----KCTVKFTWT 137 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~----~~~~~~~~~ 137 (181)
.. ++-|+.+...|-+.|-+.|+-..|++.+-.--.. ++-+..| |..-|.-+- -.++..-|.
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 32 4445667777777777777777776654322111 1112222 111121111 122666677
Q ss_pred HHHHHHH-HcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 138 TMIVGLA-ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 138 ~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.||..|. +.|++.+|+++|+++..+ ++-|......|++-|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 7776654 589999999999999875 656666666666554
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.0001 Score=53.98 Aligned_cols=159 Identities=10% Similarity=-0.088 Sum_probs=89.4
Q ss_pred cHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHH-HHHHHHHhcCcHHHHHHHHH------
Q 038237 3 FTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWT-TMIDGYLRVNRFREALTLFQ------ 71 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~-~li~~~~~~~~~~~a~~~~~------ 71 (181)
+|++.|++... |-+.||-.+-..|.+..+++.|+.+|.+-.. |..+||- -+...+-..++.++|.++|+
T Consensus 241 ~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 45566665432 7777888889999999999999988887764 3222222 22223333344445555554
Q ss_pred ----------------------------HHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcc--hHHHH
Q 038237 72 ----------------------------EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKND--IFAGN 121 (181)
Q Consensus 72 ----------------------------~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 121 (181)
++.+.|+. +...|+.+--.|.-.+.++.+..-|+........|+ ..+|-
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY 399 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY 399 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence 44444443 444444444444444444444444444433221111 11121
Q ss_pred HHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 122 ALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 122 ~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|-......| ....+|.|--.-.+.|+.+.|..+++...+.
T Consensus 400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 1111111111 5677888888888999999999999988765
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.09 E-value=0.00025 Score=58.91 Aligned_cols=140 Identities=11% Similarity=0.005 Sum_probs=74.1
Q ss_pred cHHHHhhhcCC--CCh--hHHHHHHHHHhccCCHHHHHHHhcccCCCcHHH-HHHH--HHHHHhcCcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--KDV--ISYTAIVSGYINREQVDIARQCFDQMPERDYVL-WTTM--IDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~l--i~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.|++.|++..+ |+. .++ .++..+...|+.++|...+++...|+... +..+ ...+...|++++|+++|+++.+
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555443 332 133 55566666666666666666666542222 2222 3355555666666666666665
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHH
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM 155 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 155 (181)
..-. |...+..+...+...++.++|...++.+.+. .|+...+. .++..+...++..+|++.
T Consensus 131 ~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l----------------~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 131 KDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM----------------TLSYLNRATDRNYDALQA 191 (822)
T ss_pred hCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH----------------HHHHHHHhcchHHHHHHH
Confidence 4321 2344445556666666666666666666554 22222221 122222225566568888
Q ss_pred HHHHHHc
Q 038237 156 FSQMLRA 162 (181)
Q Consensus 156 ~~~m~~~ 162 (181)
++++.+.
T Consensus 192 ~ekll~~ 198 (822)
T PRK14574 192 SSEAVRL 198 (822)
T ss_pred HHHHHHh
Confidence 8888775
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.08 E-value=0.0003 Score=51.54 Aligned_cols=153 Identities=9% Similarity=0.071 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHhcccCC-C---cHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHH
Q 038237 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPE-R---DYVLWTT-MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVS 87 (181)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (181)
.|.......+...+....+-+.+..-+++... + +-.++.. .-..+...|++++|++++++- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 36665555555555554566666666655442 2 1222322 223556679999999998753 36677778
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh--cC--------------------chHhHHHHHHHHHH
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK--CT--------------------VKFTWTTMIVGLAI 145 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~--------------------~~~~~~~li~~~~~ 145 (181)
.+..+.+.++++.|.+.++.|.+.. +-.+...|..++.. .| ++.+.|.+..++..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998753 22344445554432 11 67888999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
.|++++|.+++++..... +-|..|...++
T Consensus 214 ~~~~~eAe~~L~~al~~~-~~~~d~LaNli 242 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKD-PNDPDTLANLI 242 (290)
T ss_dssp CT-HHHHHHHHHHHCCC--CCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 999999999999976542 22344444444
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.07 E-value=0.00021 Score=55.96 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=108.0
Q ss_pred ccHHHHhhhcCCCC----hhHHHHHHHHHhccCCHHHHHHHhcccCC----------CcHH-HHHHHHHHHHhcCcHHHH
Q 038237 2 GFTLEIFGTMKNKD----VISYTAIVSGYINREQVDIARQCFDQMPE----------RDYV-LWTTMIDGYLRVNRFREA 66 (181)
Q Consensus 2 ~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a 66 (181)
++|+.++.....++ ..+++.|-.+|.+.|++++|...++...+ +.+. .++.+...+...+++++|
T Consensus 265 ~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 265 EEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 34555555444332 23577777789999999888877776652 2222 366777778888889999
Q ss_pred HHHHHHHHHc---CCCcc----HHHHHHHHHHHHccCCcchHHHHHHHHHHcC----C--Ccc-hHHHHHHHHHhHhcC-
Q 038237 67 LTLFQEIQTS---NIMGD----EFTIVSILTARANLGALELGEWIKTYIDKNK----V--KND-IFAGNALIDMYCKCT- 131 (181)
Q Consensus 67 ~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~-~~~~~~ll~~~~~~~- 131 (181)
..++....+. -..++ ..+++.+-..+.+.|++++|..+++..++.. . .+. ...++.|-..|.+.+
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 8888765431 11122 3678888888899999999999988877531 1 111 223444444444332
Q ss_pred ------------------------chHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 132 ------------------------VKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 132 ------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
...+|..|...|.+.|++++|.++.+...
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 57789999999999999999999998876
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00024 Score=51.88 Aligned_cols=146 Identities=7% Similarity=0.001 Sum_probs=88.1
Q ss_pred CccHHHHhhhcCC-CC--hhHHHHHHHHHhccCCHHHHHHHhcccCCCcHH--------HHHHHHHHHHhcCcHHHHHHH
Q 038237 1 MGFTLEIFGTMKN-KD--VISYTAIVSGYINREQVDIARQCFDQMPERDYV--------LWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 1 ~~~a~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~li~~~~~~~~~~~a~~~ 69 (181)
+|+|+.+|..+.+ |. ....--++..|-+..+|++|.++-+...+.+.. .|.-|-..+....+++.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3566666666655 22 223455666677777777777666655432222 244455555556677777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISG 147 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~ 147 (181)
+.+-.+.+-+ ++..=-.+-+.....|+++.|.+.++.+.+.+...-..+...|..+|...|....+-.++..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776665321 2222224445666778888888888888877776666777777777777665555555555554433
No 70
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.00 E-value=0.00052 Score=56.05 Aligned_cols=130 Identities=9% Similarity=0.016 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
++..+-.+.....+.|..++|..+++...+ | +......+...+.+.+++++|+..+++.....-. +......+-.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 466788888999999999999999999885 4 6667888889999999999999999999886432 45667778888
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.+.|+.++|..+|++....+.. +...+..+-..+-+ .|+.++|...|++..+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~----------------~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTR----------------RGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHh
Confidence 88999999999999999984332 34555555555544 77888888888777654
No 71
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=0.002 Score=48.26 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=129.7
Q ss_pred cHHHHhhhcCC--CC-hhHHHHHHHHHhccCCHHHHHHHhcccCCC----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--KD-VISYTAIVSGYINREQVDIARQCFDQMPER----DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+|+++..+-.+ +. ...|-....+-.+.|+.+.+.+...+.-++ +....-+...-....|+...|..-.++..+
T Consensus 102 qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~ 181 (400)
T COG3071 102 QAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLE 181 (400)
T ss_pred HHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 45565555443 22 234667778888999999999999988763 444566667778888999999999999888
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch-------HHHHHHHHHhHhcC-----------------
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI-------FAGNALIDMYCKCT----------------- 131 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~----------------- 131 (181)
.+-. ++........+|.+.|++.....++..+.+.|.-.+. .+|..++.-....+
T Consensus 182 ~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr 260 (400)
T COG3071 182 MTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR 260 (400)
T ss_pred hCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhh
Confidence 7643 6778889999999999999999999999998876544 45666666554332
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
+...--+++.-+.+.|+.++|.++.++-.+++..|+-.++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~ 301 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL 301 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH
Confidence 5666678888899999999999999999999998874433
No 72
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00036 Score=55.08 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=95.3
Q ss_pred CccHHHHhhhcCCCChhHHHHH---HHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 1 MGFTLEIFGTMKNKDVISYTAI---VSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+|.|...|+.....|+..|++. --.|.|.++.+.|+-.|+...+ .+.+....+...+.+.|+.++|+++|++..
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 3567777777766676666653 4556777888888887777765 366666677777777788888888888776
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 154 (181)
...-+ |+.+----...+...++.++|...+++++..-.. +..+ |-.+...|-+.|+.+.|+.
T Consensus 551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v----------------~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSV----------------FALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHH----------------HHHHHHHHHHHccchHHHH
Confidence 64432 3433334445555667778888888887765222 3333 3344445555999999988
Q ss_pred HHHHHHHc
Q 038237 155 MFSQMLRA 162 (181)
Q Consensus 155 ~~~~m~~~ 162 (181)
-|--+.+.
T Consensus 613 ~f~~A~~l 620 (638)
T KOG1126|consen 613 HFSWALDL 620 (638)
T ss_pred hhHHHhcC
Confidence 88777664
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.98 E-value=0.00051 Score=44.14 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
...+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|+++.|...++...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555555555554432 124444555555555555555555555555444
No 74
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00055 Score=52.27 Aligned_cols=125 Identities=10% Similarity=-0.030 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
|...+-+-|+-.++.++|...|.+..+-+-. ....|+.+-.-|....+...|.+-++..++-... |-..|-.|-.+|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence 4444445555566778888888887775422 3355666666777777777777777777665332 5555665655554
Q ss_pred hcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 129 KCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 129 ~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
--+ |...|.+|-.+|.+.++.++|...|.+....|-. +...+..|-+
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 333 8888888888888888888888888887765422 3344444433
No 75
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00012 Score=53.46 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCCCc---HHHHHHHHHH-HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPERD---YVLWTTMIDG-YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
.+|..+++..-+.+.++.|..+|.+..+.. ...|-..... |...++.+.|.++|+...+. +.-+...|..-++-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 578999999999999999999999998643 3333333333 23356777799999998875 555778888889999
Q ss_pred HccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 172 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 172 (181)
.+.++.+.+..+|+..... ..++.. ....|...+.-=.+.|+.+.+..+.+++.+. .|+...+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~-------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQ-------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHH-------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 9999999999999999876 222221 1123444445555589999999999998874 45555555
Q ss_pred HHHhhh
Q 038237 173 GVLSAR 178 (181)
Q Consensus 173 ~li~~~ 178 (181)
.+++-|
T Consensus 145 ~f~~ry 150 (280)
T PF05843_consen 145 LFSDRY 150 (280)
T ss_dssp HHHCCT
T ss_pred HHHHHh
Confidence 555433
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00065 Score=51.96 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=116.0
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHH
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMID---GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 104 (181)
-+|++++|.+.+++..+.|...-.+|.. .+-..|++++|++.|-++..- +.-+..+.--+...|--..+...|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4688999999999998876665555444 345568999999999887642 123556666677777777888888887
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038237 105 KTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 166 (181)
+-+... -++.|+.+...|-..|-+.| +..+...|-.-|....-++++...|++..- ++|
T Consensus 581 ~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 581 LMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 766543 35668889999999998887 677777788888888889999999998654 799
Q ss_pred ChhhHHHHHhhhcc
Q 038237 167 DEVAYVGVLSARTH 180 (181)
Q Consensus 167 ~~~t~~~li~~~~~ 180 (181)
+..-|-.++-+|-+
T Consensus 658 ~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 658 NQSKWQLMIASCFR 671 (840)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999999854
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.92 E-value=0.0016 Score=45.45 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=95.4
Q ss_pred CCh-hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHH
Q 038237 14 KDV-ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVSI 88 (181)
Q Consensus 14 ~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 88 (181)
|+. .+|..+-..|-+.|+.+.|.+-|+...+ .+-...|.--.-+|..|++++|...|++-...---|. ..+|..+
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 443 3688888889999999999998888764 3666777777778888899999999988876532222 3567777
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
--+..+.|+++.|...|++-.+....- ....-.+...+. ..|+.-.|...++.....+. ++.
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~----------------~~~~y~~Ar~~~~~~~~~~~-~~A 207 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHY----------------KAGDYAPARLYLERYQQRGG-AQA 207 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHH----------------hcccchHHHHHHHHHHhccc-ccH
Confidence 777788899999999888887764321 112222333333 36666666666666665544 544
Q ss_pred hhHH
Q 038237 169 VAYV 172 (181)
Q Consensus 169 ~t~~ 172 (181)
...-
T Consensus 208 ~sL~ 211 (250)
T COG3063 208 ESLL 211 (250)
T ss_pred HHHH
Confidence 4433
No 78
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.90 E-value=0.00018 Score=56.83 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=95.2
Q ss_pred HHHHhhhcCC--CC-hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 4 TLEIFGTMKN--KD-VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 4 a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
|++.|.+... |+ ...|-.+-+.|...+.++.|..-+..... ...++|..|-..|...|..+-|++.|++..+.
T Consensus 237 aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 237 AIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred HHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 4444444443 32 12355555555555566655555554432 24455666666666666777777777666553
Q ss_pred CCccH-HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHH
Q 038237 78 IMGDE-FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTT 138 (181)
Q Consensus 78 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~ 138 (181)
.|+- ..|+.+..++-..|+..+|...+.+....... .....+.|-..|.+.| -...+|.
T Consensus 316 -~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 316 -QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred -CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 3443 56777777777777777777777766654322 2233444555555444 3445777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
|-..|-+.|++++|...|++... +.|+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 77778888888888888887764 5554
No 79
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.90 E-value=0.0012 Score=52.38 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=113.5
Q ss_pred ccHHHHhhhcCC--CC-hhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KD-VISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
|.|++-|++..+ |+ +..|+.+-+++-..|++.+|.+.+..... | -....+.|-..|...|.+++|..+|..-.+
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 556666766554 44 34688888888888888888888887764 3 455677888888888888888888887766
Q ss_pred cCCCcc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch-HHHHHHHHHhHhcC------------------chHh
Q 038237 76 SNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI-FAGNALIDMYCKCT------------------VKFT 135 (181)
Q Consensus 76 ~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~------------------~~~~ 135 (181)
- -|. ...++.|...+-+.|++++|...+++.+.- .|+- ..|+.+-..|-..| -...
T Consensus 383 v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 383 V--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred h--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 3 233 355778888888888888888888877654 3321 22333333333333 3456
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
++.|-..|-..|+..+|.+-|++..+ ++||.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 78888888899999999999999876 45553
No 80
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00082 Score=47.84 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC-CcHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLR----VNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
...=+..+.|..+++-|.+.+++|.+ .+-.+.+-|..++.+ .+...+|+-+|++|.++ .+|+.-+.+-..-++.
T Consensus 140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 140 AALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 33334555566667777777777776 355566656555554 35689999999999874 5688889999999999
Q ss_pred ccCCcchHHHHHHHHHHcCCC
Q 038237 94 NLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~ 114 (181)
..|++++|+.+++....+...
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC
Confidence 999999999999999887544
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.86 E-value=0.0028 Score=46.64 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVSILTAR 92 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 92 (181)
..|...-..+.+.|+.++|...|++..+ .+...|+.+-..+...|++++|.+.|++..+. .|+ ...+..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3477777788999999999999998874 37788999999999999999999999999874 344 56777788888
Q ss_pred HccCCcchHHHHHHHHHHcCC
Q 038237 93 ANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~ 113 (181)
...|++++|...++...+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999987643
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00072 Score=43.44 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+......+...+.+.|+.++|.+.|+.... .+...|..+-..+.+.|++++|...++...+.+ +.+...+..+-..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344566777888899999999999988754 477888899999999999999999999987764 3456777778889
Q ss_pred HHccCCcchHHHHHHHHHHcC
Q 038237 92 RANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+...|+++.|...++...+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999888864
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.81 E-value=0.00083 Score=47.51 Aligned_cols=147 Identities=10% Similarity=-0.002 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc-H---HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccH-HHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RD-Y---VLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDE-FTIV 86 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-~~~~ 86 (181)
....+-.....+.+.|++++|...|++... |+ . .++..+...+.+.|++++|...++++.+..- .|.. ..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344555555666666666666666665543 21 1 2445555666666666666666666654321 1110 1222
Q ss_pred HHHHHHHcc--------CCcchHHHHHHHHHHcCCCcchHHHH-----------------HHHHHhHhcC----------
Q 038237 87 SILTARANL--------GALELGEWIKTYIDKNKVKNDIFAGN-----------------ALIDMYCKCT---------- 131 (181)
Q Consensus 87 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~ll~~~~~~~---------- 131 (181)
.+-.++.+. |+.+.|...++.+.+..... ...+. .+-..|.+.|
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 222233222 45556666666665542221 10100 1112232222
Q ss_pred -----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 -----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....+..+..++.+.|++++|...++.+...
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2356777888888899999999999998765
No 84
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.78 E-value=0.00051 Score=43.86 Aligned_cols=48 Identities=6% Similarity=0.051 Sum_probs=34.3
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALID 125 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~ 125 (181)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4577777777777777777777777777777665 66666666666665
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.77 E-value=0.00063 Score=47.04 Aligned_cols=100 Identities=6% Similarity=0.035 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHHcCCCccHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGY-LRVNR--FREALTLFQEIQTSNIMGDEFTIVS 87 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ 87 (181)
.|...|..+-..+...|++++|...|+...+ .+...+..+-.++ ...|+ .++|.+++++..+.+-. +...+..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~ 149 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALML 149 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 4677899999999999999999999998875 4777788877764 67677 59999999999987543 6678888
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+-..+.+.|++++|...++.+.+...+
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 889999999999999999999887443
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00045 Score=40.42 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
++..+...+.+.|++++|...+++..+ .+...+..+...+...+++++|.+.|+....... .+...+..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 355667778889999999999988764 3446777788888888999999999998877542 244677788888889
Q ss_pred cCCcchHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKN 111 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~ 111 (181)
.|+.+.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999888877654
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.00028 Score=49.84 Aligned_cols=109 Identities=15% Similarity=0.070 Sum_probs=92.8
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.+|.+.|++... +|...|+.+-.+|.+.|+++.|..-|.+..+ .+....|.|--.+.-.|+.++|..++..-..
T Consensus 117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777877654 6888999999999999999999999998875 5888899999999999999999999999887
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.+.. |..+-..+.......|+++.|+.+-..-...
T Consensus 197 ~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 197 SPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred CCCC-chHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 6543 6777788888999999999999887665544
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0011 Score=43.41 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC--CcH-H---HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH--HHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE--RDY-V---LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE--FTIVSI 88 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~-~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l 88 (181)
..|..++..+. .++...+...++.+.. |+. . ..-.+-..+...|++++|...|+........|+. ....-+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45777777774 8888888888888875 222 2 2223446778889999999999999987633332 234446
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
...+...|++++|...++......+. ... +...-+.+.+.|+.++|...|++-
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~--~~~----------------~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFK--ALA----------------AELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchH--HHH----------------HHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67778899999999999764332222 122 223445566699999999999863
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.70 E-value=0.0069 Score=42.82 Aligned_cols=135 Identities=12% Similarity=-0.022 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-Ccc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch--HH
Q 038237 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI--FA 119 (181)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 119 (181)
......+-.+...+.+.|++++|...|++.....- .|. ...+..+..++.+.|++++|...++.+.+....... ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45777888888899999999999999999876431 111 246677888999999999999999999876432111 12
Q ss_pred HHHHHHHhHhc--------C------------------chHhH-----------------HHHHHHHHHcCChhHHHHHH
Q 038237 120 GNALIDMYCKC--------T------------------VKFTW-----------------TTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 120 ~~~ll~~~~~~--------~------------------~~~~~-----------------~~li~~~~~~~~~~~a~~~~ 156 (181)
+..+-..+... + +...+ -.+-..+.+.|++++|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 22222222211 1 11111 13445577889999999999
Q ss_pred HHHHHcC--CCCChhhHHHHHhhh
Q 038237 157 SQMLRAS--IKPDEVAYVGVLSAR 178 (181)
Q Consensus 157 ~~m~~~~--~~p~~~t~~~li~~~ 178 (181)
++..+.. -+.....+..+..++
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAY 213 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHH
Confidence 9998762 122334555554443
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.70 E-value=0.0039 Score=49.74 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=120.5
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCC-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 4 TLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 4 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
++..+.+|+ ..|-..+..+.+.|++.....+|+..... ....|...+.-.-..+-++-+.+++++-.+.
T Consensus 94 ~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-- 167 (835)
T KOG2047|consen 94 CLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-- 167 (835)
T ss_pred HHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--
Confidence 344444444 56777777778888888888888877642 3335777777777888888999999988774
Q ss_pred CccHHHHHHHHHHHHccCCcchHHHHHHHHHHc------CCCcchHHHHHHHHHhHhcC---------------------
Q 038237 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKN------KVKNDIFAGNALIDMYCKCT--------------------- 131 (181)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~--------------------- 131 (181)
++..-+--+..+++.+++++|.+.+..+... .-+.+-..|.-+.+..++.+
T Consensus 168 --~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD 245 (835)
T KOG2047|consen 168 --APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD 245 (835)
T ss_pred --CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH
Confidence 4444677788899999999999888877642 22345556666666555544
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
-...|++|.+-|.+.|.+++|.++|++-...- ....-|..++++|+
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 35679999999999999999999999987752 24445666666665
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.69 E-value=0.0004 Score=52.85 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=91.1
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
+.|+.+|+++.+.++.....+...+...++-.+|.+++.+..+ .+......-...+.+.++.+.|+++.++..+.
T Consensus 186 ~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-- 263 (395)
T PF09295_consen 186 DEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-- 263 (395)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Confidence 6789999999987777788888988888898999999888875 36666666677889999999999999999885
Q ss_pred CccH-HHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 79 MGDE-FTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 79 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
.|+. .+|..|..+|.+.|+++.|...++.+..
T Consensus 264 sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 264 SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 4665 6999999999999999999999887753
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.68 E-value=0.0032 Score=49.54 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=99.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCC-------cHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHc-----C-CCc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPER-------DYVLW----TTMIDGYLRVNRFREALTLFQEIQTS-----N-IMG 80 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p 80 (181)
+...+...|...|++++|..+++...+. +.... +.+-..|...+++.+|..+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5666889999999999999999887642 22222 23455777789999999999998642 2 223
Q ss_pred cH-HHHHHHHHHHHccCCcchHHHHHHHHHHc------CCCcchHHHHH-HHHHhHhcC---------------------
Q 038237 81 DE-FTIVSILTARANLGALELGEWIKTYIDKN------KVKNDIFAGNA-LIDMYCKCT--------------------- 131 (181)
Q Consensus 81 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~-ll~~~~~~~--------------------- 131 (181)
.. .+++.|-.+|.+.|++++|...++...+- ...|.+....+ +...++..+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 32 56777778899999999988877765431 12233332222 222222221
Q ss_pred -----chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 -----VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
-..+++.|-..|-..|++++|.+++++...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 356799999999999999999999999864
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0018 Score=40.34 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNI--MGDEFTIVSI 88 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l 88 (181)
.++......+.+.|++++|.+.|+.+.+ |+ ...+..+...+.+.|++++|.+.|++.....- +.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888899999999999999964 32 34666788899999999999999999886431 1124567777
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
...+.+.|+.++|...++.+......
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 78888999999999999999987543
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.62 E-value=0.011 Score=44.30 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccH--HHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDE--FTIVSILTA 91 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~ 91 (181)
....+...+...|++++|.+.+++..+ .+...+..+-..+...|++++|...+++.....- .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 344555678899999999999999875 3566788888899999999999999998776432 2333 345577888
Q ss_pred HHccCCcchHHHHHHHHHHcCC-CcchHHH-H--HHHHHhHhcC------------c---------hHhHH--HHHHHHH
Q 038237 92 RANLGALELGEWIKTYIDKNKV-KNDIFAG-N--ALIDMYCKCT------------V---------KFTWT--TMIVGLA 144 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~------------~---------~~~~~--~li~~~~ 144 (181)
+...|++++|..+++....... .+..... + .++.-+...| + ...++ ....++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 8999999999999999864432 1222111 1 1122121112 0 01122 4566677
Q ss_pred HcCChhHHHHHHHHHHHc
Q 038237 145 ISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 145 ~~~~~~~a~~~~~~m~~~ 162 (181)
..|+.+.|..+++.+...
T Consensus 276 ~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 276 GAGDKDALDKLLAALKGR 293 (355)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 899999999999999764
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.59 E-value=0.0043 Score=50.85 Aligned_cols=123 Identities=9% Similarity=0.001 Sum_probs=97.3
Q ss_pred CccHHHHhhhcCC--CChh-HHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 1 MGFTLEIFGTMKN--KDVI-SYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 1 ~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
.|+|+++++...+ |+.. ....+...+.+.+++++|....+.... | +......+-.++.+.|++++|..+|++..
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3688888888775 6554 577888999999999999999999986 3 55667777778899999999999999999
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
..+- -+...+..+-.++.+.|+.++|...|+...+.. .|...-|+.++.
T Consensus 182 ~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 182 RQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 8432 246788888999999999999999999988752 223344454443
No 96
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.58 E-value=0.0026 Score=37.01 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
+..+...+...|++++|...+++..+..- .+...+..+...+...+++++|...++...+.... +...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~---------- 70 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKA---------- 70 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhH----------
Confidence 55667778889999999999999877532 23466777888888999999999999998876433 2223
Q ss_pred cCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 130 CTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 130 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+..+...+...|+.++|.+.+++..+.
T Consensus 71 ------~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 71 ------YYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred ------HHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 334444555589999999999887653
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00071 Score=55.76 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=119.3
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|.+... .|...-+-+--.++..|++.+|..||.+.++. +..+|-.+-..|...|++..|+++|+...+
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888886654 46666677888899999999999999999874 558899999999999999999999999765
Q ss_pred cC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc-----CchHhHHHHHHHHHHcCCh
Q 038237 76 SN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC-----TVKFTWTTMIVGLAISGNG 149 (181)
Q Consensus 76 ~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~~li~~~~~~~~~ 149 (181)
.- -.-+..+.+-|-+++.+.|.+.+|.+.+-......+.-..+.+|..+-..-.. ....| +=......+..
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t---~eev~~a~~~l 785 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT---LEEVLEAVKEL 785 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc---HHHHHHHHHHH
Confidence 43 34567888889999999999999988887777766665556666655433211 01111 11112235578
Q ss_pred hHHHHHHHHHHHcCCC
Q 038237 150 DKALDMFSQMLRASIK 165 (181)
Q Consensus 150 ~~a~~~~~~m~~~~~~ 165 (181)
+.|.++|..|...+-+
T Consensus 786 e~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 786 EEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8999999999887544
No 98
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.55 E-value=0.00064 Score=43.41 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHHHhh
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 177 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~ 177 (181)
...+++.+|+.+|++..|+++++...+. +++-+..+|..|++=
T Consensus 54 lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 54 LLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3334444444599999999999999988 898899999998864
No 99
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.52 E-value=0.0015 Score=47.08 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=56.8
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
+..+-....++.|.+.|++-|..+|+.||+.+-+.. -...+...+..|-+ +-+=+.+++++|...||-||..+=..
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 344445555666666677777777777776665433 23334444444443 33458899999999999999999999
Q ss_pred HHhhhcc
Q 038237 174 VLSARTH 180 (181)
Q Consensus 174 li~~~~~ 180 (181)
|++++.+
T Consensus 164 lvn~FGr 170 (406)
T KOG3941|consen 164 LVNAFGR 170 (406)
T ss_pred HHHHhcc
Confidence 9999875
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.0053 Score=46.46 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=50.3
Q ss_pred HHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 25 GYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
.+.+.|++++|.+.|++..+ .+...|..+-.+|.+.|++++|+..+++.....- .+...|..+-.++...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 34455666666666666653 2455555666666666666666666666655321 1344555555666666666666
Q ss_pred HHHHHHHHHc
Q 038237 102 EWIKTYIDKN 111 (181)
Q Consensus 102 ~~~~~~~~~~ 111 (181)
...|+.....
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.49 E-value=0.0062 Score=45.74 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=72.1
Q ss_pred cCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHH
Q 038237 29 REQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
.+..+.+.+.++.... | .......+-..+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555543222 1 22233344456667777778877777777653 224456666777777777787777777
Q ss_pred HHHHHcCCC-cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 106 TYIDKNKVK-NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
++....... |+.. ...|..+...+...|++++|.+++++....
T Consensus 172 ~~~l~~~~~~~~~~--------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 172 ESWRDTWDCSSMLR--------------GHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HhhhhccCCCcchh--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 776654221 1111 112344555667799999999999998543
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.49 E-value=0.00023 Score=42.01 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=50.8
Q ss_pred cCCHHHHHHHhcccCC--C---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHH
Q 038237 29 REQVDIARQCFDQMPE--R---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 103 (181)
.|+++.|..+++.+.. | +...+-.+...+.+.|++++|+.+++..... . .+....-.+..++.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~-~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD-P-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH-H-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5778888888888764 3 2344555777888888888888888872221 1 122344455777888888888888
Q ss_pred HHHH
Q 038237 104 IKTY 107 (181)
Q Consensus 104 ~~~~ 107 (181)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 103
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0038 Score=48.23 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=94.2
Q ss_pred cCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHH
Q 038237 29 REQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
.+++++|..=|++..+ .++.+|--+-.+..+.+++++++..|++.+++ ++-...+|+.....+...++++.|...|
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 3445555555555543 25667777777888888999999999998775 5556788999999999999999999999
Q ss_pred HHHHHcCCC-------cchHHHHHHHHHhHhcC-----------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 106 TYIDKNKVK-------NDIFAGNALIDMYCKCT-----------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 106 ~~~~~~~~~-------~~~~~~~~ll~~~~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+..+..... +.+.+...++-.-.+.. .-..|-+|-..-.+.|+.++|.++|++-..
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887764221 22333333332222211 456788999999999999999999998653
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.48 E-value=0.0084 Score=37.22 Aligned_cols=99 Identities=15% Similarity=0.002 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc--chHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNI--MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--DIFAGNAL 123 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 123 (181)
.++-.+...+.+.|++++|.+.|.++....- ......+..+...+.+.|+++.|...++.+....... ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677788899999999999999986431 1113466678899999999999999999998753221 12223333
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
...+.+.|+.++|.+.++++.+.
T Consensus 83 ----------------~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 ----------------GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ----------------HHHHHHhCChHHHHHHHHHHHHH
Confidence 33445599999999999999987
No 105
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.40 E-value=0.015 Score=40.81 Aligned_cols=128 Identities=11% Similarity=0.027 Sum_probs=95.0
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
..-+--+|.+.|+...|..-+++..+. +.-+|..+-..|-+.|..+.|.+-|++-....-. +-.+.|..-.-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 445666788899999999999888763 5557888888899999999999999987764321 345666666667888
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|++++|...|+.....-.-+.. ..+|..+.-+..+.|+++.|.+.|++-.+.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~---------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEP---------------SDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCc---------------chhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 8999999999888775222111 124445555566799999999999998875
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.34 E-value=0.019 Score=47.40 Aligned_cols=167 Identities=16% Similarity=0.091 Sum_probs=110.6
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccC---CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMP---ERDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|.+++.+... .+...|-+|-..|-+.|+.+++...+--.. ..|...|-.+-+-..+.|+++.|.-.|.+..+
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 567777776653 355568888888888888888877665443 34777888888888888888888888888777
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH---------------------HHhHhcC---
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI---------------------DMYCKCT--- 131 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---------------------~~~~~~~--- 131 (181)
.. +++...+---+..|-+.|+...|..-|.++.+.....|..-.-.++ .++...+
T Consensus 236 ~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~ 314 (895)
T KOG2076|consen 236 AN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEA 314 (895)
T ss_pred cC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccc
Confidence 53 2344555555667778888888888888877764422222222222 2222111
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 169 (181)
+...+|.++..+.+..++++|......+......||..
T Consensus 315 ~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 315 SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 55567778888888888888888888777644444443
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0048 Score=45.53 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHccC
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT-IVSILTARANLG 96 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~ 96 (181)
.-+-.+|-+.|.+.+|.+.|+.-.. |-+.||-.|-..|-+..+++.|+.+|.+-.+. .|-.+| ..-..+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4567889999999999999887764 78889999999999999999999999887764 344444 445566667778
Q ss_pred CcchHHHHHHHHHHc
Q 038237 97 ALELGEWIKTYIDKN 111 (181)
Q Consensus 97 ~~~~a~~~~~~~~~~ 111 (181)
..+++.++++...+.
T Consensus 305 ~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL 319 (478)
T ss_pred hHHHHHHHHHHHHhc
Confidence 889999999888775
No 108
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.048 Score=42.16 Aligned_cols=48 Identities=17% Similarity=0.070 Sum_probs=34.1
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|-..|-.+-++|.-.+.+.-|+-.|++...- -+-|+..|.+|-+.|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEK 444 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHH
Confidence 6777777777777777777788777777654 33467777777766643
No 109
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.29 E-value=0.005 Score=44.53 Aligned_cols=97 Identities=9% Similarity=0.064 Sum_probs=77.2
Q ss_pred HHHHhcccC--CCcHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC----------
Q 038237 35 ARQCFDQMP--ERDYVLWTTMIDGYLRV-----NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA---------- 97 (181)
Q Consensus 35 a~~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------- 97 (181)
.+..|...+ ++|-..|-..+.-+... +.++-....+..|++.|+..|..+|+.|++.+=+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 46777777777776554 5688888899999999999999999999998866542
Q ss_pred ------cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 98 ------LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 98 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
-+=+..++++|...|+.||..+-..|+.++++.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 2236788999999999999999999999998865
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.0021 Score=51.65 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHH
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAI 145 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~ 145 (181)
+|-.+=.+..+.++++.+.+.|.......+ -+...||.+-.+|.+.+ +...|...+.....
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 333333344455666666666666554321 13445666666665554 44556666777777
Q ss_pred cCChhHHHHHHHHHHHc
Q 038237 146 SGNGDKALDMFSQMLRA 162 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~ 162 (181)
-|.+++|.+.++++.+-
T Consensus 600 vge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDL 616 (777)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999998754
No 111
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.27 E-value=0.00076 Score=39.71 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=56.2
Q ss_pred cCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHH
Q 038237 60 VNRFREALTLFQEIQTSNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTT 138 (181)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 138 (181)
.|+++.|+.+|+++.+..- .|+...+-.+..++.+.|++++|..+++. .+. .+...... -.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~---------------~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIH---------------YL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHH---------------HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHH---------------HH
Confidence 5789999999999987643 23455566689999999999999999988 222 22111111 12
Q ss_pred HHHHHHHcCChhHHHHHHHH
Q 038237 139 MIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~ 158 (181)
+-.++.+.|++++|.+.|++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhc
Confidence 24456679999999999986
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.26 E-value=0.023 Score=45.12 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=101.8
Q ss_pred CChhHH--HHHHHHHhccCCHHHHHHHhcccCC--Cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 14 KDVISY--TAIVSGYINREQVDIARQCFDQMPE--RD-YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 14 ~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
|+...| .-+-..|...|++++|.+.++.... |+ +..|-.-...+-+.|++.+|.+.++........ |...=+..
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~ 268 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKC 268 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHH
Confidence 444344 5557778899999999999998876 43 456777788899999999999999999887654 78888889
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
...+.++|++++|..++..+.+.+..|-.. |..+-|. =...-.-.+|.+.|++..|+.-|..+.+
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~----L~~mQc~----Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSN----LNDMQCM----WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccC----HHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999998776533221 1111110 0012233456778888888877776654
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0015 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=35.6
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.+.|++++|++.|++.....-. +...+..+...+.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567777777777777654322 5566666777777777777777777777765
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.037 Score=39.73 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=87.6
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----cc
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA----NL 95 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~ 95 (181)
..-...|++.|++++|.+.... -.+......=+..+.+..+++-|.+.+++|.+- -+..|.+-|..++. ..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 3345668899999999999887 334444444455677888999999999999885 24556554555544 45
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.+.+|.-+|++|-++ ..|++-+.+.....+.. .|++++|..++++..++
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~----------------~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ----------------LGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHH----------------hcCHHHHHHHHHHHHhc
Confidence 5688899999999763 56666666655555444 89999999999998876
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0015 Score=54.01 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=97.2
Q ss_pred CCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHH
Q 038237 30 EQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKT 106 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 106 (181)
+..++|.++|.+..+ .|..+-|-+-..++..|++++|..+|.+..+.... +..+|-.+...|...|.+..|.++|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 456889999887765 36677777888889999999999999999987652 45677788999999999999999999
Q ss_pred HHHHc-CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 107 YIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 107 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
...+. ....++.+...|-.++-+ +|++.+|.+.+-........-....||..+
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~----------------~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYE----------------AGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 88776 445566666666666655 888888888877776654444445555443
No 116
>PLN02789 farnesyltranstransferase
Probab=97.21 E-value=0.051 Score=40.55 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=97.0
Q ss_pred ccHHHHhhhcCC--CChh-HHHHHHHHHhccC-CHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCc--HHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVI-SYTAIVSGYINRE-QVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNR--FREALTLFQE 72 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~--~~~a~~~~~~ 72 (181)
++|+.++++... |+.. +|+.--..+.+.| ++++++..++++.+ .+..+|+.--..+.+.|+ .++++.++++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 345555555543 4332 3444444445555 56777777776653 355566654444444454 2567777777
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc----------------------
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC---------------------- 130 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------------------- 130 (181)
+.+..-+ |...|+-..-++.+.|+++++.+.++++++.++. +...|+.....+.+.
T Consensus 134 al~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 134 ILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred HHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 7765443 6677777777777777888888888887776544 333333322221111
Q ss_pred ---CchHhHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 131 ---TVKFTWTTMIVGLAIS----GNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 131 ---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.|...|+-+-..+... ++..+|.+.+.+..+.+ +.+......|++.|
T Consensus 212 ~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~ 265 (320)
T PLN02789 212 ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLL 265 (320)
T ss_pred hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHH
Confidence 0666677666666653 23345767776655432 23444444455444
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.20 E-value=0.0085 Score=45.35 Aligned_cols=86 Identities=6% Similarity=0.083 Sum_probs=67.0
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... | +...|..+..++.+.|++++|...++.... .+...|..+-.+|...|++++|...|++..+
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467777777654 4 455788888899999999999999998874 3677888888899999999999999999887
Q ss_pred cCCCccHHHHHHHH
Q 038237 76 SNIMGDEFTIVSIL 89 (181)
Q Consensus 76 ~~~~p~~~~~~~l~ 89 (181)
.. |+.......+
T Consensus 99 l~--P~~~~~~~~l 110 (356)
T PLN03088 99 LA--PGDSRFTKLI 110 (356)
T ss_pred hC--CCCHHHHHHH
Confidence 43 5544444444
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.06 E-value=0.044 Score=36.86 Aligned_cols=67 Identities=9% Similarity=-0.039 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD--EFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
....+..+...+...|++++|...|++..+..-.+. ...+..+...+.+.|++++|...+++.....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677777788888999999999998876543222 3567788888888999999999888887753
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.04 E-value=0.016 Score=38.24 Aligned_cols=94 Identities=6% Similarity=-0.006 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
...-.+-..+...|++++|.++|+.... | +..-|-.|-..+-..|++++|+..|......... |...+-.+-.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3444556667788888988888888764 3 4445666666777778889999998888776643 6677777788888
Q ss_pred ccCCcchHHHHHHHHHHc
Q 038237 94 NLGALELGEWIKTYIDKN 111 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~ 111 (181)
+.|+.+.|..-|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877765
No 120
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.011 Score=46.35 Aligned_cols=173 Identities=17% Similarity=0.088 Sum_probs=92.1
Q ss_pred ccHHHHhhhcCCCCh---hHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKNKDV---ISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|.+...-|. ..|-..-..|+-.|..++|..-+....+ + ...++--+---|.+.+..+.|.+.|.+...
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 467777776554221 2466666666666666665554443322 1 111111122234445555555555554433
Q ss_pred cCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHc----CC-C-cchHHHHHHHHHhHhcC-----------------
Q 038237 76 SNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKN----KV-K-NDIFAGNALIDMYCKCT----------------- 131 (181)
Q Consensus 76 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~ll~~~~~~~----------------- 131 (181)
+-| |+...+-+--.....+.+.+|..+|+..... +- . ....+++.|-++|.+.+
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 222 2233333322333345555555555544411 00 0 12233444444444443
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
|..++.++--.|...|+++.|.+.|++-.. +.||-.+...+++.+
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 666677777777779999999999998765 789988888887754
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.059 Score=45.69 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+.+|+.+..+=.+.|.+.+|.+-|- +..|+..|.-+|+...+.|.+++..+.+....+..-.|...+ .|+-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyi--kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYI--KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHH--hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 34567888888788888888877664 345667788888888888888888888777766666665554 68888888
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
.+++.+.++... .|+......+-+-|-..+ ++.-|.-+-..++..|++..|.+.-++.
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 888766655431 233322222222222222 4556677777777777777777665554
Q ss_pred CCChhhHHHHHhhh
Q 038237 165 KPDEVAYVGVLSAR 178 (181)
Q Consensus 165 ~p~~~t~~~li~~~ 178 (181)
.+..||.-+=.+|
T Consensus 1247 -ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFAC 1259 (1666)
T ss_pred -cchhHHHHHHHHH
Confidence 3556666655555
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.97 E-value=0.0018 Score=36.29 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=45.5
Q ss_pred hccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 27 INREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
.+.|++++|.++|+.+.. | +...+-.+...|.+.|++++|.++++++.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 467889999999998863 3 77777788899999999999999999988753 554444443
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0079 Score=33.32 Aligned_cols=56 Identities=7% Similarity=-0.023 Sum_probs=34.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|...++...+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566667777777777766654 124556666666666777777777777666554
No 124
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.88 E-value=0.12 Score=41.16 Aligned_cols=139 Identities=9% Similarity=-0.044 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHhcc-----CCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHc-
Q 038237 14 KDVISYTAIVSGYINR-----EQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVN--------RFREALTLFQEIQTS- 76 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~- 76 (181)
.|...|...+.+.... +..+.|.++|++..+ | ....|..+..++.... +...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 5777899888886542 337799999999875 4 3345555444333221 233444444443332
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
....+...|.++--.....|++++|...+++..... |+...|..+-. .+...|+.++|.+.+
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~----------------~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGK----------------VYELKGDNRLAADAY 476 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHH----------------HHHHcCCHHHHHHHH
Confidence 123345667766666666799999999999998876 44444444444 444499999999999
Q ss_pred HHHHHcCCCCChhhHH
Q 038237 157 SQMLRASIKPDEVAYV 172 (181)
Q Consensus 157 ~~m~~~~~~p~~~t~~ 172 (181)
++.... .|...||.
T Consensus 477 ~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 477 STAFNL--RPGENTLY 490 (517)
T ss_pred HHHHhc--CCCCchHH
Confidence 998764 45544443
No 125
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.0096 Score=38.88 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH-----H
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML-----R 161 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~ 161 (181)
.++..+...|+++.+..+.+......+- +...|.. +|.+|.+.|+...|.+.|+++. +
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~----------------lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRL----------------LMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHH----------------HHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHH----------------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777766666655332 3333333 3444444777777777777764 2
Q ss_pred cCCCCChhhHH
Q 038237 162 ASIKPDEVAYV 172 (181)
Q Consensus 162 ~~~~p~~~t~~ 172 (181)
.|+.|+..|-.
T Consensus 130 lg~~Ps~~~~~ 140 (146)
T PF03704_consen 130 LGIEPSPETRA 140 (146)
T ss_dssp HS----HHHHH
T ss_pred hCcCcCHHHHH
Confidence 37777776643
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.88 E-value=0.0099 Score=38.86 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=65.7
Q ss_pred HHHHHhccCCHHHHHHHhcccCC--CcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 22 IVSGYINREQVDIARQCFDQMPE--RDY----VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
+-..+...|++++|...|+.... ++. ...-.|...+...|++++|+..++...... .....+...-+.+.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHC
Confidence 44778889999999999999875 333 234456778888999999999997754433 3445667788899999
Q ss_pred CCcchHHHHHHH
Q 038237 96 GALELGEWIKTY 107 (181)
Q Consensus 96 ~~~~~a~~~~~~ 107 (181)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999875
No 127
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.12 Score=40.41 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=90.1
Q ss_pred ccCCHHHHHHHhcccC--CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHH
Q 038237 28 NREQVDIARQCFDQMP--ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
..|++..|.++|+... +|+..+|.+.|+.=.+-..++.|..+|++..-. .|+..+|--..+-=.+.|....+..++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3455666666665554 378888888888888888888888888887764 388888777777667778777777777
Q ss_pred HHHHHc-CCCcchHHHHHHHHHhHhc----------------------------------------C-------------
Q 038237 106 TYIDKN-KVKNDIFAGNALIDMYCKC----------------------------------------T------------- 131 (181)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~ll~~~~~~----------------------------------------~------------- 131 (181)
+..++. |- ...-..|..+++.- |
T Consensus 231 erAie~~~~---d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEFLGD---DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 666543 21 11112222222210 0
Q ss_pred -------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038237 132 -------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166 (181)
Q Consensus 132 -------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 166 (181)
|..+|--.+..-...|+.+...++|++.... ++|
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 7777888888888889999999999988764 555
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.86 E-value=0.11 Score=43.11 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=90.0
Q ss_pred HHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 22 IVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
.-..+++ |+.++|.+++.+..+ ....+|..|-..|-+.|+.+++...+-.....+ +-|..-|..+-+-..+.|.+
T Consensus 146 AN~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 3445555 999999999999985 478899999999999999999988876655543 33668888888888999999
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.|.-.+.+.++....--...|. -...| -+.|+...|++-|.++...
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~e-rs~L~----------------~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYE-RSSLY----------------QKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHH-HHHHH----------------HHhChHHHHHHHHHHHHhh
Confidence 99999999999875443222222 12233 3366666666666666654
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.022 Score=43.99 Aligned_cols=109 Identities=11% Similarity=0.027 Sum_probs=87.1
Q ss_pred ccHHHHhhhcCC--CCh-hHHHHHHHHHhccCCHHHHHHHhcccCC--Cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDV-ISYTAIVSGYINREQVDIARQCFDQMPE--RD-YVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+..++.+.. ||. .-+....+.+.+.++.++|.+.++.+.. |+ ...+-++-.++.+.|++.+|..++++-..
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 567777776543 654 4556667999999999999999999985 54 55677788899999999999999999877
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.. +-|...|..|-.+|...|+..++..-..+....
T Consensus 403 ~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 403 ND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred cC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 64 447899999999999999888887766665543
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.81 E-value=0.15 Score=40.31 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCCccHH-HHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-----RDYVLWTTMIDGYLRVNRFREALTLFQEIQ-TSNIMGDEF-TIVSIL 89 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~-~~~~l~ 89 (181)
.+|...|+..-+..-++.|..+|.+.++ ..+..++++|.-||.. +.+-|.++|+-=. +- +|.. --..-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf---~d~p~yv~~Yl 442 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKF---GDSPEYVLKYL 442 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 3799999999999999999999999986 2777888888877765 7788999998744 44 3433 334667
Q ss_pred HHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+-+...++-+.+..+|+....++..||. ....|..+|.--+.-|+...+.++-+++...
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~k--------------s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADK--------------SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhh--------------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7788899999999999999998666554 2234444555555588888888888777654
No 131
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.018 Score=42.13 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=88.2
Q ss_pred HHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-------------ccH-----
Q 038237 25 GYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-------------GDE----- 82 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~----- 82 (181)
..-+.|+.+.|.+-|+...+ ....+||..+.- .+.|+...|++...++.++|++ ||.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 34578899999999988875 456678776654 4567899999999998888773 222
Q ss_pred ---HHHHHHHHHH-------HccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhc--C---------------chH
Q 038237 83 ---FTIVSILTAR-------ANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKC--T---------------VKF 134 (181)
Q Consensus 83 ---~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~--~---------------~~~ 134 (181)
..-+.++.++ .+.++++.|.+.+-.|.-+ ..+.|++|...+.-.-... + -..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChH
Confidence 1123334333 4678888888888877654 4455666654433222221 1 466
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
||..++-.||++.-++-|-+++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777788888888888777777654
No 132
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.018 Score=37.52 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH-----cCCCcchHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-----NKVKNDIFAG 120 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 120 (181)
+...++..+...|++++|.++........ +.|...|..+|.++.+.|+...|..+|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45667777888999999999999998754 34778999999999999999999999988753 4888887663
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.069 Score=33.80 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=74.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc
Q 038237 53 MIDGYLRVNRFREALTLFQEIQTSNIMGD--EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (181)
+-.++-..|+.++|+.+|++-...|.... ...+-.+-..+...|+.++|..+++...... |+...... +.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~-l~----- 78 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAA-LR----- 78 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHH-HH-----
Confidence 34566778999999999999999887655 3456667788889999999999999888753 32111111 11
Q ss_pred CchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 131 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
-.+-.++...|+.++|++++-..... +...|.--|..|+
T Consensus 79 ------~f~Al~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 79 ------VFLALALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred ------HHHHHHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 01122445589999999988776543 3336666665554
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.70 E-value=0.09 Score=35.37 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
....+..+...+.+.|++++|...|++... ++ ...+..+...+.+.|++++|...+.+.....- -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 344577778888899999999999998863 22 45788888999999999999999999887532 134556666
Q ss_pred HHHHHccCC
Q 038237 89 LTARANLGA 97 (181)
Q Consensus 89 ~~~~~~~~~ 97 (181)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666766665
No 135
>PLN02789 farnesyltranstransferase
Probab=96.69 E-value=0.16 Score=38.00 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
++..+-..+.+.++.++|+.+.+++.+ | +..+|+.--..+...| ++++++..++++.+.+-+ +..+|+..-..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 455566667778899999999998875 3 4445655444555556 589999999998876543 5556665544445
Q ss_pred ccCCc--chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 94 NLGAL--ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 94 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
+.|+. +.+....+.+.+...+ |..+|+-.--.+.+.|+++++++.++++.+...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-----------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-----------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-----------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 55542 4455566566554333 444555555555567888888888888877644
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.67 E-value=0.019 Score=32.07 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDK 110 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 110 (181)
+...|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|...++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666666777777666666543 114455666666666666 56666666665554
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.14 Score=36.68 Aligned_cols=130 Identities=9% Similarity=0.016 Sum_probs=91.1
Q ss_pred cCCHHHHHHHhcccCC--------C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH-HHHHccCCc
Q 038237 29 REQVDIARQCFDQMPE--------R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL-TARANLGAL 98 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~ 98 (181)
..+.++..+++.++.. + -...|.-++-+....|+.+.|..+++++...- |...-...+= --+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456777777777753 1 23457777778888899999999999987753 4432222111 112346888
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
++|.++++.+.... +.|.+++-.=+-..-..| |...|.-+-..|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999998876 445666553333332233 89999999999999999999999999997
Q ss_pred H
Q 038237 161 R 161 (181)
Q Consensus 161 ~ 161 (181)
-
T Consensus 182 l 182 (289)
T KOG3060|consen 182 L 182 (289)
T ss_pred H
Confidence 6
No 138
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.66 E-value=0.018 Score=42.90 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
+.+..|.-+...|+...|.++..+..=|+-.-|-..|.+++..++|++..++-.. +-++.-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455677778889999999999988889999999999999999999887665332 1245778889999999999
Q ss_pred cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
..+|......+.. .--+..|.+.| .|.-.+....+.++.+.-..+.+..
T Consensus 253 ~~eA~~yI~k~~~----------~~rv~~y~~~~---~~~~A~~~A~~~kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKIPD----------EERVEMYLKCG---DYKEAAQEAFKEKDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhCCh----------HHHHHHHHHCC---CHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8888877777221 22233333332 2344555555666665555555444
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.60 E-value=0.0095 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=46.5
Q ss_pred HHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 22 IVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+-..+.+.|++++|.+.|++..+ | +...+..+-..+...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567889999999999999986 3 6778888889999999999999999998764
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.59 E-value=0.0084 Score=33.61 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVN-RFREALTLFQEIQT 75 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 75 (181)
+..+|..+-..+.+.|++++|...|++..+ .++..|..+-.++.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456788899999999999999999999874 47778999999999999 79999999998765
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.57 E-value=0.11 Score=34.42 Aligned_cols=109 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred HHHhcccC-CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 36 RQCFDQMP-ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 36 ~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+..+.++. ..+....-.+-.-+...|++++|.++|+........ +..-|-.|--.+-..|++++|...+.......+.
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34445555 555555556666778899999999999998875432 4455667777778899999999999999887653
Q ss_pred cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 115 NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|+..+-.+-..+. ..|+.+.|.+-|+.....
T Consensus 102 -dp~~~~~ag~c~L----------------~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 102 -APQAPWAAAECYL----------------ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -CchHHHHHHHHHH----------------HcCCHHHHHHHHHHHHHH
Confidence 4444444444444 488888888888877665
No 142
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.55 E-value=0.18 Score=44.21 Aligned_cols=153 Identities=17% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHHHhhhcCC-CChh-HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 4 TLEIFGTMKN-KDVI-SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 4 a~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
..++|++..+ -|+. +|..|...|.+.+..++|.++++.|.+ .....|...++.+.+.++-+.|.+++.+..+.
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-- 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-- 1593 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--
Confidence 4556666554 3444 588889999999999999999999986 47788999999999999999999999987764
Q ss_pred Ccc---HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH-HHHcCChhHHHH
Q 038237 79 MGD---EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG-LAISGNGDKALD 154 (181)
Q Consensus 79 ~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~ 154 (181)
.|. ..........-.+.|+.+.+..+|+.....-++ -...|+.+++.=.+.++...---++.- +...=...++..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 233 223333444446789999999999999887444 677899999998888754444444333 223334445555
Q ss_pred HHHHH
Q 038237 155 MFSQM 159 (181)
Q Consensus 155 ~~~~m 159 (181)
+|.+.
T Consensus 1673 ffKkw 1677 (1710)
T KOG1070|consen 1673 FFKKW 1677 (1710)
T ss_pred HHHHH
Confidence 55444
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.51 E-value=0.021 Score=46.73 Aligned_cols=96 Identities=19% Similarity=0.309 Sum_probs=66.7
Q ss_pred cHHHHhhhcCCCChhH--HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 038237 3 FTLEIFGTMKNKDVIS--YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80 (181)
Q Consensus 3 ~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (181)
+|+.+++.++..++.+ |.-+.+.|+..|+++.|.++|.+.. .++-.|..|.+.|+|++|.++-++... -..
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~ 822 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEA 822 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chh
Confidence 5667777776655443 7777888899999999999887654 467778899999999999988776543 223
Q ss_pred cHHHHHHHHHHHHccCCcchHHHHH
Q 038237 81 DEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
....|-+-..-+-+.|++.+|++++
T Consensus 823 t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhhee
Confidence 4445555555555666666666654
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.48 E-value=0.27 Score=39.01 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc-chHHHHHHHHHhHhcC---------
Q 038237 63 FREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCT--------- 131 (181)
Q Consensus 63 ~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~--------- 131 (181)
.+.....+++.+..- +.| +.+|...|+...+..-++.|..+|.+.++.+..+ +++++++++.-||...
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 455556666665533 333 3567778888888888999999999999988777 9999999999998765
Q ss_pred --------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHh
Q 038237 132 --------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE--VAYVGVLS 176 (181)
Q Consensus 132 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~li~ 176 (181)
+...-+..++-+...++-..+..+|++....++.|+. ..|..+|+
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 4455566677777788888899999999888665543 56666554
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.12 Score=38.56 Aligned_cols=101 Identities=12% Similarity=-0.009 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
+.+.-|.-+...|+...|.++-.+.+- |+..-|..-+.+++..++|++-+.+-.. + -.+..|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 344556667778888888777666533 7999999999999999999887765432 1 23355666677766
Q ss_pred hcC---------chHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 129 KCT---------VKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 129 ~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
+.| .-..+.--+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 666 3355678888889999999887664443
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.47 E-value=0.34 Score=41.15 Aligned_cols=128 Identities=7% Similarity=-0.001 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+..+..+|-+.|+.++|..++++..+ .|+.+.|.+-..|+.. ++++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555566666666666666654 3566666666666666 666666666654443 444
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHH----HHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKNKVKNDIFAGN----ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
...+..+..++..+....+. +...+- .+...-....-+.++--+-..|-..++++++.++++.+.+.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 44555555555555554322 111111 11111111114556667777788899999999999999875
No 147
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.44 E-value=0.11 Score=37.65 Aligned_cols=99 Identities=18% Similarity=0.138 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE----FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
..|...+.-..+.|++++|...|+.+.+.- |+. ..+-.+-..+...|++++|...|+.+.+.-.. +.....++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhHHH
Confidence 356666666677799999999999988743 433 35567788888999999999999999875222 11122222
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
. -+...+...|+.++|.+.|++..+.
T Consensus 221 ~-------------klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 F-------------KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred H-------------HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1223344589999999999988875
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.41 E-value=0.15 Score=34.10 Aligned_cols=104 Identities=13% Similarity=-0.061 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG--DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
....|..+...+...|++++|...|++.....-.| ...++..+-..+...|+.++|...++........ ....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 34566777778888899999999999987653222 2357888888889999999999999888865322 23334444
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
...+.. +-..+.+.|+++.|+..+++-
T Consensus 113 a~i~~~---------~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHY---------RGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHH---------hhHHHHHcccHHHHHHHHHHH
Confidence 333332 222334688888666666554
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.33 E-value=0.096 Score=35.04 Aligned_cols=91 Identities=11% Similarity=-0.065 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (181)
...|..+...+...|++++|...|+.... ++ ..+|..+-..+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34567778888899999999999998852 22 3478888899999999999999999987642 22334555555
Q ss_pred HHHH-------ccCCcchHHHHHHH
Q 038237 90 TARA-------NLGALELGEWIKTY 107 (181)
Q Consensus 90 ~~~~-------~~~~~~~a~~~~~~ 107 (181)
..+. +.|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 77787766555543
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.33 E-value=0.31 Score=39.51 Aligned_cols=90 Identities=17% Similarity=0.253 Sum_probs=58.8
Q ss_pred cHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCC-------------------------------------
Q 038237 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER------------------------------------- 45 (181)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------------------- 45 (181)
.+.++|++...-++..-.-.|..+++.+++++|-+.+......
T Consensus 156 ts~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 156 TSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 3556666555555555667777888888888887777766531
Q ss_pred ---------c--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 46 ---------D--YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 46 ---------~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
| -..|++|.+-|.+.|++++|..+|++-...- .+..-++.+.++|.+
T Consensus 236 iR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 236 IRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 0 1147778888888888888888887755432 244556666676654
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.14 Score=37.64 Aligned_cols=110 Identities=10% Similarity=-0.004 Sum_probs=76.4
Q ss_pred cHHHHhhhcCC-CChhHHHHHHHH--HhccCCHHHHHHHhcccCC-CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-cC
Q 038237 3 FTLEIFGTMKN-KDVISYTAIVSG--YINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SN 77 (181)
Q Consensus 3 ~a~~~~~~~~~-~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~ 77 (181)
.|+++...|.. |+...-..=+.+ .-..+++..+..+.++.+. .+..+.+..-.-..+.|+++.|.+-|....+ .|
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 46666666665 433332222222 2356778888888888884 5666677766777889999999999999876 55
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
..| ...|+..+- ..+.++...|.....+++.+|+.
T Consensus 176 yqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 176 YQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred CCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 654 456766554 44568889999999999887764
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.29 E-value=0.15 Score=37.40 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
.+|..+|...-+.+..+.|..+|.+..+.+ .........+.+.-+ ..++.+.|..||+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578889999999999999999999998643 233444444444332 246666799999998876 33455555555555
Q ss_pred hHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 127 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.. .++.+.|..+|++....
T Consensus 80 l~~----------------~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIK----------------LNDINNARALFERAISS 99 (280)
T ss_dssp HHH----------------TT-HHHHHHHHHHHCCT
T ss_pred HHH----------------hCcHHHHHHHHHHHHHh
Confidence 544 88999999999998766
No 153
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.056 Score=42.13 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=89.9
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARAN 94 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 94 (181)
|.-+-..|.+..+.++.++.|++... .|+.+|..=-..+.-.+++++|..=|++...- .| +...|--+--+.-|
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHH
Confidence 77788889999999999999998875 35566665555566667888888888887764 23 23444444444457
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+.+++++..|++.+++ ++..+.+|+..- ..+...+++++|.+.|+...+.
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA----------------eiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFA----------------EILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHH----------------HHHhhHHhHHHHHHHHHHHHhh
Confidence 88999999999999876 333444444444 4444599999999999988764
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.28 E-value=0.088 Score=38.16 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--CcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCccHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--RDY----VLWTTMIDGYLRVNRFREALTLFQEIQTSN--IMGDEFTIVSIL 89 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~ 89 (181)
.|...+..+.+.|++++|...|+.+.+ |+. .++--+-..|...|++++|...|..+.+.- -+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 477777777778999999999999875 433 467778889999999999999999997642 111234444556
Q ss_pred HHHHccCCcchHHHHHHHHHHcC
Q 038237 90 TARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..+...|+.+.|..+++.+++.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778999999999999998763
No 155
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.27 Score=35.55 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
-+.++..+.-.+.+.-.+.++++..+..-+-++.....+.+.-.+.||.+.|...|+...+..-..+..+.+.++..-.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556777788888888887665667777888888889999999999999988876555555555554432211
Q ss_pred c---C--------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 130 C---T--------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 130 ~---~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
. | |...-|.=.-++.-.|+..+|.+..+.|+.. .|...+-+++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 1 0 5555555444455578999999999999874 5655555543
No 156
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.017 Score=33.18 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHc----C-CCcc-HHHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTS----N-IMGD-EFTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
.+|+.+-..|...|++++|++.|++..+. | -.|+ ..++..+-..+...|++++|...+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777777778888888877776532 1 1132 45677777777788888888887776543
No 157
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.28 Score=39.17 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHH--HHHHH--HhcCcHHHHHHHHHHHHHcCCCccH-HHHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTT--MIDGY--LRVNRFREALTLFQEIQTSNIMGDE-FTIVSILTAR 92 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~ 92 (181)
.+.+=+-++.+.+++++|+.+.+.-... .+++. +=.+| .+.++.++|+..++ |..++. .+...-...|
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvl 120 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVL 120 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHH
Confidence 4666667777888888888666544321 11122 23333 45678888888877 333333 3555566778
Q ss_pred HccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcC----------chHhHHHHH---HHHHHcCChhHHHHHHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCT----------VKFTWTTMI---VGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~----------~~~~~~~li---~~~~~~~~~~~a~~~~~~ 158 (181)
-+.|++++|..+++.+.+.+.+ -+...-..++.+-.... ...+|..+. -.+...|++.+|+++++.
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8999999999999999877543 23333333333322211 222333333 235579999999999998
Q ss_pred H
Q 038237 159 M 159 (181)
Q Consensus 159 m 159 (181)
-
T Consensus 201 A 201 (652)
T KOG2376|consen 201 A 201 (652)
T ss_pred H
Confidence 8
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.19 E-value=0.063 Score=39.28 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=79.1
Q ss_pred cHHHHhhhcCCCChh--HHHHHHHHHhcc-CCHHHHHHHhcccCC-----C----cHHHHHHHHHHHHhcCcHHHHHHHH
Q 038237 3 FTLEIFGTMKNKDVI--SYTAIVSGYINR-EQVDIARQCFDQMPE-----R----DYVLWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 3 ~a~~~~~~~~~~~~~--~~~~li~~~~~~-~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~ 70 (181)
+|.++|....+|+.. .+..+-..|-+. |++++|.+.|++... . -...+..+...+.+.|++++|.++|
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455555555554433 456666667777 788777777777653 1 2234667777888889999999999
Q ss_pred HHHHHcCC-----CccHH-HHHHHHHHHHccCCcchHHHHHHHHHHc--CCCcc--hHHHHHHHHHhHhcCchHhHHHHH
Q 038237 71 QEIQTSNI-----MGDEF-TIVSILTARANLGALELGEWIKTYIDKN--KVKND--IFAGNALIDMYCKCTVKFTWTTMI 140 (181)
Q Consensus 71 ~~m~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~ll~~~~~~~~~~~~~~li 140 (181)
++....-. +++.. .+-..+-.+...||...|...++..... ++..+ ......||.++-. +|...+...+
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~av 257 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTEAV 257 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHHHC
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence 98866432 22232 2333444666778888888888888754 33322 3334444554432 3444444444
Q ss_pred HHHH
Q 038237 141 VGLA 144 (181)
Q Consensus 141 ~~~~ 144 (181)
.-|-
T Consensus 258 ~~~d 261 (282)
T PF14938_consen 258 AEYD 261 (282)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 4443
No 159
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.18 E-value=0.55 Score=38.33 Aligned_cols=150 Identities=12% Similarity=0.100 Sum_probs=87.9
Q ss_pred HHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 24 SGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
..+-+.++++.|.+.|..=.+ | .+..|-+|..-=-+.|.+.+|..+|++-.-.+-+ |...|-..|+.=.+.|..+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHH
Confidence 334444444444444433332 2 3445666655556667788888888887766543 66778888888888888888
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHH-------------hHhcC-chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDM-------------YCKCT-VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP 166 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~-------------~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 166 (181)
|..++.+..+. ++.+...|.--|-. +-++. |.+..-++-..+=...++++|.++|++..+.+ +-
T Consensus 772 a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 772 AELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 88877766654 22233334333332 22221 56666666666666777778888887776642 12
Q ss_pred ChhhHHHHHh
Q 038237 167 DEVAYVGVLS 176 (181)
Q Consensus 167 ~~~t~~~li~ 176 (181)
+..+|..+..
T Consensus 850 ~GD~wa~fyk 859 (913)
T KOG0495|consen 850 NGDAWAWFYK 859 (913)
T ss_pred cchHHHHHHH
Confidence 3455555544
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.094 Score=39.43 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=42.2
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH-hHhcC----------------chHhH-HHHHHHHHHcCChh
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM-YCKCT----------------VKFTW-TTMIVGLAISGNGD 150 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~----------------~~~~~-~~li~~~~~~~~~~ 150 (181)
..+.+..|...+|+++|-.+....++ |..+|.+++.- |.+.+ +..+. ..+..-|-+.+++-
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677666555433333 55555554433 33333 11111 12223345677777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHH
Q 038237 151 KALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 151 ~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
-|-+.|+.+.. ..|++..|.-
T Consensus 479 yaaKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 479 YAAKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHHHhhhHHHc--cCCCccccCC
Confidence 77777777765 4566666543
No 161
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.062 Score=42.43 Aligned_cols=124 Identities=17% Similarity=0.080 Sum_probs=90.7
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCCC----------cHHHHHHHHHHHHhcCcHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPER----------DYVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
.|.++|.+... | |+.+.+-+--..-+.+.+.+|...|+....+ -..+++.|-.+|.+.+++++|+..
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 46666666543 3 6667777766667778888888888877621 233577777788889999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
|++-.... +-|..++.++--.+...|+++.|.+.|.+-. ...|+-.+-..++..+..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 99877653 3477888888888889999999999888765 446777666666665544
No 162
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.12 E-value=0.086 Score=43.39 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=81.3
Q ss_pred HHHhccCCHHHHHHHhcccCCCcHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 24 SGYINREQVDIARQCFDQMPERDYV--LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
.+.....+|.+|..+++.++..++. -|..+.+-|+..|+++-|.++|.+-- .++-.|..|.+.|+|+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3344566777778887777755443 47888889999999999999997632 234568899999999999
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------chHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------VKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
..+-++. .|.+.....|-.-..-.-+.| ++..-.-.|..|-+.|..++.+++.++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence 8875544 355555555544443333433 2333344566666666666666665543
No 163
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.044 Score=31.45 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHc--CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.+|+.+-..+...|++++|...+++..+. ...++. .. -..+++.+-..+...|++++|++.+++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~---------~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PD---------TANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HH---------HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888899999999999999999988865 111111 11 12356677778888999999999999865
Q ss_pred H
Q 038237 161 R 161 (181)
Q Consensus 161 ~ 161 (181)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 4
No 164
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.06 E-value=0.57 Score=37.46 Aligned_cols=133 Identities=12% Similarity=0.129 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccC------------------CCcHHHH--HHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMP------------------ERDYVLW--TTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~------------------~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+.+|+.+-..|......+-..+++.... .|+...| .-+-..|...|++++|++.+++...
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3456777777776666555555555542 1233334 4455667789999999999998777
Q ss_pred cCCCcc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHH
Q 038237 76 SNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154 (181)
Q Consensus 76 ~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 154 (181)
. .|+ +..|..-.+.+-..|++.+|...++..+..... |.+.-+.....+. |+|+.++|.+
T Consensus 223 h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L----------------Ra~~~e~A~~ 283 (517)
T PF12569_consen 223 H--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL----------------RAGRIEEAEK 283 (517)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH----------------HCCCHHHHHH
Confidence 5 355 577888888899999999999999999887544 5555444444444 4999999999
Q ss_pred HHHHHHHcCCCCC
Q 038237 155 MFSQMLRASIKPD 167 (181)
Q Consensus 155 ~~~~m~~~~~~p~ 167 (181)
++......+..|-
T Consensus 284 ~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 284 TASLFTREDVDPL 296 (517)
T ss_pred HHHhhcCCCCCcc
Confidence 9999988776443
No 165
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.06 E-value=0.45 Score=36.26 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC-------cHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER-------DYVLWTTMIDGYLR---VNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
-..++-.|-...+++...++++.++.. +...-....-++.+ .|+.++|++++.......-.++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 345566788999999999999999873 22222233445556 78999999999997766666788888877
Q ss_pred HHHHHcc---------CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH------------------------hcC----
Q 038237 89 LTARANL---------GALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------------------------KCT---- 131 (181)
Q Consensus 89 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------------------------~~~---- 131 (181)
-+.|-.. ...+.|...+.+--. ..||.+.--.+...+. +.|
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7766432 123334443332221 1232222111111111 111
Q ss_pred --chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 --VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|.=.+.+++.+..-.|+.++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444667888899999999999999999876
No 166
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.01 E-value=0.045 Score=30.91 Aligned_cols=58 Identities=16% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
..|.+.+++++|.+.++.+...+- .+...+...-..+.+.|++++|...++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356677777777777777776532 2445555666667777777777777777776543
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.00 E-value=0.4 Score=35.10 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC-------Cc--HHHHHHHHHHHHhc-CcHHHHHHHHHHHHH----cCCCc-cHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE-------RD--YVLWTTMIDGYLRV-NRFREALTLFQEIQT----SNIMG-DEF 83 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-------~~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~p-~~~ 83 (181)
|......+-+. ++++|.+.+++... ++ ...+..+-..|-+. |++++|++.|++-.+ .|-.- -..
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~ 156 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE 156 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 44444444333 66666665555542 22 22456666677777 899999999888643 33111 135
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc-
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA- 162 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 162 (181)
++..+...+.+.|++++|..+|+++...-...+..-|+ .=. .|-..+-++...|+...|.+.|++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~-~~~---------~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS-AKE---------YFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH-HHH---------HHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh-HHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56777888899999999999999998764332211111 000 1111222334478888888888888754
Q ss_pred -CCCCC--hhhHHHHHhhh
Q 038237 163 -SIKPD--EVAYVGVLSAR 178 (181)
Q Consensus 163 -~~~p~--~~t~~~li~~~ 178 (181)
++..+ ......||.+|
T Consensus 227 ~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 33222 33444455554
No 168
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.85 E-value=0.11 Score=38.34 Aligned_cols=128 Identities=10% Similarity=0.177 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc--cC----CcchHHHHHHHHHHcCC---C
Q 038237 46 DYVLWTTMIDGYLRV--NRFREALTLFQEIQTSNIMGDEFTIVSILTARAN--LG----ALELGEWIKTYIDKNKV---K 114 (181)
Q Consensus 46 ~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~ 114 (181)
...++.+++...... ..+.+.+.+++.|.+.|++-+..+|-+....... .. ....+..+++.|++..+ .
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 444555555554441 2366777788888888888777776554333333 22 23457788888887643 2
Q ss_pred cchHHHHHHHHHhHhc----------------------Cc-hHhHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCChh
Q 038237 115 NDIFAGNALIDMYCKC----------------------TV-KFTWTTMIVGLAISGN--GDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 115 ~~~~~~~~ll~~~~~~----------------------~~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 169 (181)
++-.++..|+..-... || ....+.++.......+ ..++.++++.+++.|+++-..
T Consensus 139 ~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 139 PEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred ccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 3444455544432111 12 2333333333322222 347899999999999887666
Q ss_pred hHHH
Q 038237 170 AYVG 173 (181)
Q Consensus 170 t~~~ 173 (181)
.|..
T Consensus 219 ~yp~ 222 (297)
T PF13170_consen 219 HYPT 222 (297)
T ss_pred cccH
Confidence 5543
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.83 E-value=0.28 Score=35.87 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=70.1
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHh
Q 038237 56 GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 135 (181)
-+.+.+++.+|+..|.+..+.. +-|.+-|..-..+|.+.|.++.|.+=.+.-+.- |.. | ..+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----Dp~--------y-----ska 151 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----DPH--------Y-----SKA 151 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----ChH--------H-----HHH
Confidence 3456678888888888877753 235677777888888888888877655444433 221 1 225
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
|..|=.+|...|++++|.+.|++..+ +.|+-.+|-.=|+
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 66677777779999999999888776 6788777765544
No 170
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.80 E-value=0.077 Score=31.97 Aligned_cols=63 Identities=11% Similarity=0.000 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDM 126 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~ 126 (181)
+.=++.+-++.+....+.|++.+..+.+++|.|.+|+..|..+++.++.+ |. +...|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 44466777788888889999999999999999999999999999998855 32 34466666543
No 171
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.73 E-value=0.076 Score=32.35 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHH
Q 038237 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDM 126 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~ 126 (181)
=+..+-+..+....+.|++.+..+.+++|.|.+++..|..+++.++.+ |-. ...|..++.-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHH
Confidence 356667777778889999999999999999999999999999999876 322 2266666643
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.17 Score=39.28 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDY----VLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+...|+.+-.+|.+.|++++|...|+...+ |+. .+|..+-.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456799999999999999999999998764 543 35999999999999999999999998875
No 173
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.68 E-value=0.17 Score=41.31 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=29.7
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
+...||.+-.+|.+.|+-.+|...+.+..+.+.
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 788899999999999999999999999887653
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.62 E-value=0.27 Score=39.31 Aligned_cols=116 Identities=10% Similarity=0.008 Sum_probs=78.7
Q ss_pred ccHHHHhhhcCC--CCh-hHHHHHHHHHhcc--------CCHHHHHHHhcccC-----CCcHHHHHHHHHHHHhcCcHHH
Q 038237 2 GFTLEIFGTMKN--KDV-ISYTAIVSGYINR--------EQVDIARQCFDQMP-----ERDYVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~-~~~~~li~~~~~~--------~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~ 65 (181)
+.|.++|++..+ |+- ..|..+..++... .++..+.+..+... ..+...|.++--.....|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 357777777765 543 2344433322211 22344444444422 2355678877666777899999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC-CcchHH
Q 038237 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFA 119 (181)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 119 (181)
|...+++....+ |+...|..+-..+...|+.++|...+++...... .|+...
T Consensus 439 A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 439 AYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999998876 6888999999999999999999999988877643 343333
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.58 E-value=0.6 Score=36.46 Aligned_cols=127 Identities=10% Similarity=0.076 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC-----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHH-HHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE-----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI-VSIL 89 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~ 89 (181)
..+|++.|++.-+..-++.|..+|.+.++ +++..++++|.-++. |+..-|..+|+-=... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45688899999999999999999999875 577888898887765 4667788888764332 2455443 4667
Q ss_pred HHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.-+.+.++-+.|..+|+.-+.+-.. --...|..+|+-=.. -|+...+..+=++|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~----------------~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESM----------------VGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh----------------hcchHHHHhHHHHHHH
Confidence 7778889999999999854432100 113455555554444 5555555555555543
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.23 Score=39.39 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=78.2
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-HHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE-FTIVSIL 89 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~ 89 (181)
+|+.+++.|--.|--.|++++|..-|+.... | |...||-|-..+++..+.++|+..|.+.++- +|+- .....|-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 6778889999999999999999999999875 4 8889999999999999999999999999874 5664 3444566
Q ss_pred HHHHccCCcchHHHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYID 109 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~ 109 (181)
-+|+..|.+.+|...|=..+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 67899999999877665443
No 177
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.61 Score=36.63 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=97.0
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHh----ccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYI----NREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQE 72 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (181)
+.++++|+.... ....||.-+=-.|+ ++.++..|.+++..... |...+|..-|..=.+.+.++....+|++
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666655443 34455555433333 56778888888877764 6777777777777788888888888888
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhH
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~ 151 (181)
..+-+- -|..+|......=...|+.+.|..+|+-.++. ....-...|.+.|+ --...|.+++
T Consensus 463 fle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----------------FEi~~~E~ek 525 (677)
T KOG1915|consen 463 FLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----------------FEIEEGEFEK 525 (677)
T ss_pred HHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----------------hhhhcchHHH
Confidence 887642 24566665555556778888888888877764 22223333444444 4444999999
Q ss_pred HHHHHHHHHHc
Q 038237 152 ALDMFSQMLRA 162 (181)
Q Consensus 152 a~~~~~~m~~~ 162 (181)
|..+|+++.+.
T Consensus 526 aR~LYerlL~r 536 (677)
T KOG1915|consen 526 ARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 178
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.33 E-value=0.54 Score=31.95 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc-chHHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE--FTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALI 124 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll 124 (181)
..+..+..-|++.|+.++|++.|.++......|.. ..+-.+|+.....+++..+.....+....-..+ |...-|- +
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr-l 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR-L 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH-H
Confidence 46888999999999999999999999887655544 456788889999999999998888776642222 2222121 2
Q ss_pred HHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.+ |..+. +...+++..|-+.|-+...
T Consensus 116 k~---------~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KV---------YEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HH---------HHHHH--HHHhchHHHHHHHHHccCc
Confidence 11 12221 2236788888888877653
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.26 E-value=0.059 Score=30.40 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=46.8
Q ss_pred HHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 24 SGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
..+.+.+++++|.++++.+.. .++..|...-..+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567889999999999999985 366678888889999999999999999998753
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.12 E-value=0.7 Score=36.03 Aligned_cols=144 Identities=8% Similarity=0.069 Sum_probs=92.4
Q ss_pred HhccCCHHHHHHHhcccCCC---c------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH--Hc
Q 038237 26 YINREQVDIARQCFDQMPER---D------YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR--AN 94 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~ 94 (181)
+-+.++..+|.++|...... + .+.-+.+|++|... +.+.....+....+. .| ...|-.+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 34778899999999888642 2 23345677777665 455555555554442 23 34455566555 36
Q ss_pred cCCcchHHHHHHHHHHc--CCCc---chHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcC----CC
Q 038237 95 LGALELGEWIKTYIDKN--KVKN---DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS----IK 165 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~ 165 (181)
.+.+++|.+.+..-... +..| |...+..+- |...=+..++++...|++.++..++++|...= ..
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~-------df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~ 164 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS-------DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE 164 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc
Confidence 78888888887776654 3322 222222111 33444678888899999999999999998653 44
Q ss_pred CChhhHHHHHhhhcc
Q 038237 166 PDEVAYVGVLSARTH 180 (181)
Q Consensus 166 p~~~t~~~li~~~~~ 180 (181)
.|..+|+.++-.+++
T Consensus 165 w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 165 WNSDMYDRAVLMLSR 179 (549)
T ss_pred ccHHHHHHHHHHHhH
Confidence 899999986554443
No 181
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.10 E-value=1.6 Score=35.90 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=107.6
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
.|+.++.+.-+ | +...|-..+..-..+.+++.|..+|...+. ++.-.|--=+..-.-.+..++|++++++..+.
T Consensus 602 ~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 602 AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 34555554432 3 556799999999999999999999999885 45555554444445567788899988887663
Q ss_pred CCccH-HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHH
Q 038237 78 IMGDE-FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTT 138 (181)
Q Consensus 78 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~ 138 (181)
-|+- -.|..+-..+-+.++++.|...|..=.+. ++-....|-.|...=-+.| |...|-.
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 2444 33444445556667777776655432222 1222333433333222221 7788888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
.|..-.|.|..+.|..+..+..+. ++-+...|.--|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 888888999999999888877664 444555554444
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.01 E-value=0.37 Score=40.32 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=63.3
Q ss_pred HhccCCHHHHHHHhcccCCC-cHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHH
Q 038237 26 YINREQVDIARQCFDQMPER-DYVLWTTMIDGY--LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
....+++.+|.+-.....+. .-..|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.+..+++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34556777777766666542 222344444444 5567888888777777665555 7778888888888888888888
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 103 WIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
.+++...+. .|+......+..+|.|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHH
Confidence 888877765 3333333333333333
No 183
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.97 E-value=0.61 Score=30.54 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=69.5
Q ss_pred HHHcCCCccH--HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCC-h
Q 038237 73 IQTSNIMGDE--FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN-G 149 (181)
Q Consensus 73 m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~-~ 149 (181)
|.+.+..++. ...+.++.-....+++.....+++.+..- .++ .+. ...+...|++++.+.++..- -
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l--~~~------~~~---~~~~~ssf~~if~SlsnSsSaK 96 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL--NTD------NII---GWLDNSSFHIIFKSLSNSSSAK 96 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh--hHH------HHh---hhcccchHHHHHHHHccChHHH
Confidence 4555666555 44678888888888898888888888221 110 011 11156678888888876666 4
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHhhhccC
Q 038237 150 DKALDMFSQMLRASIKPDEVAYVGVLSARTHN 181 (181)
Q Consensus 150 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 181 (181)
--+..+|+-|++.+.+++..-|..+|++|.+.
T Consensus 97 ~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 97 LTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45688899999888999999999999998763
No 184
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.94 E-value=2.1 Score=36.63 Aligned_cols=146 Identities=10% Similarity=0.032 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHH-HHHHHHHHHhcCcHHHHHHH------------------HHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVL-WTTMIDGYLRVNRFREALTL------------------FQE 72 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~~~~~~a~~~------------------~~~ 72 (181)
.+...+..|+..+-..+++++|.++.++... |+... |-.+-..+.+.++.+++.-+ ...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 3566788999999999999999999886653 32221 11111134444444443333 233
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---chHhHHHHHHHHHHcCCh
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---VKFTWTTMIVGLAISGNG 149 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~~~~li~~~~~~~~~ 149 (181)
|... .-+...+-.+..+|-+.|+.+++..+++++.+.. +-|....|.+-..|+... -...+.-.+.-+...+++
T Consensus 109 i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~ 185 (906)
T PRK14720 109 ILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQY 185 (906)
T ss_pred HHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 3332 1233566778888888899999999999999987 347788888888877652 234455666667777888
Q ss_pred hHHHHHHHHHHHc
Q 038237 150 DKALDMFSQMLRA 162 (181)
Q Consensus 150 ~~a~~~~~~m~~~ 162 (181)
..+.++|.++...
T Consensus 186 ~~~~e~W~k~~~~ 198 (906)
T PRK14720 186 VGIEEIWSKLVHY 198 (906)
T ss_pred hHHHHHHHHHHhc
Confidence 8888888888774
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.46 Score=35.91 Aligned_cols=89 Identities=11% Similarity=0.166 Sum_probs=60.9
Q ss_pred HHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHcc
Q 038237 21 AIVSGYINREQVDIARQCFDQMPER---DYVLWTTMID-GYLRVNRFREALTLFQEIQTSNIMGDEFT-IVSILTARANL 95 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~ 95 (181)
.+..+.+-.|...+|+++|-....| |-.+|.+++. .|.+++.++.|+.++-.+... .+..+ .-.+..-|-+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 3556777788888888888877764 6677776655 667788888888877665442 22322 23445667777
Q ss_pred CCcchHHHHHHHHHHcC
Q 038237 96 GALELGEWIKTYIDKNK 112 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~ 112 (181)
+.+=-|...|+.+....
T Consensus 475 ~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHhhhHHHccC
Confidence 77777777777777653
No 186
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.87 E-value=0.54 Score=34.36 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH---
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR--- 161 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--- 161 (181)
+..++..+...|+++.+...++++...... +. ..|-.+|.+|.+.|+...|.+.|+++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E----------------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DE----------------PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-ch----------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 444556666667777777777777665433 33 3445555555559999999999998865
Q ss_pred --cCCCCChhhHHHHHhh
Q 038237 162 --ASIKPDEVAYVGVLSA 177 (181)
Q Consensus 162 --~~~~p~~~t~~~li~~ 177 (181)
.|+.|...+.....+.
T Consensus 219 edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 219 EELGIDPAPELRALYEEI 236 (280)
T ss_pred hhcCCCccHHHHHHHHHH
Confidence 4899988887776654
No 187
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.4 Score=34.12 Aligned_cols=146 Identities=7% Similarity=-0.123 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTM---IDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
|+.....+-+.+...|+.++|...|+....-|+.+..+| ---+.+.|++++...+.+.+.... +-....|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 344455566666666666666666666555443333221 011234455555555555443321 0011111111122
Q ss_pred HHccCCcchHHHHHHHHHHcCCC--cchHHHHHHHHHhHhcC---------------chHhHHHHHHHHHHcCChhHHHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVK--NDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAISGNGDKALD 154 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~ 154 (181)
.....+++.|..+-++.++.... |....-..++....+.. +...|..|+++|...|++++|..
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 22334444555554444443211 11111111111111110 77888889999988999998887
Q ss_pred HHHHHHH
Q 038237 155 MFSQMLR 161 (181)
Q Consensus 155 ~~~~m~~ 161 (181)
+-+....
T Consensus 390 ~An~~~~ 396 (564)
T KOG1174|consen 390 LANWTIR 396 (564)
T ss_pred HHHHHHH
Confidence 7665543
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.74 E-value=0.84 Score=33.41 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH-----cCCCcchHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-----NKVKNDIFAGNAL 123 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 123 (181)
++..++..+...|+++.+.+.++++.... +-+...|.-+|.++.+.|+...|...++++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 56778888888899999999999988764 34778899999999999999999999988876 4889998888887
Q ss_pred HHHhHh
Q 038237 124 IDMYCK 129 (181)
Q Consensus 124 l~~~~~ 129 (181)
......
T Consensus 234 ~~~~~~ 239 (280)
T COG3629 234 EEILRQ 239 (280)
T ss_pred HHHhcc
Confidence 777443
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.72 E-value=0.45 Score=34.88 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=72.3
Q ss_pred HhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHccCCcchH
Q 038237 26 YINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE-FTIVSILTARANLGALELG 101 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 101 (181)
+.+.+++++|...|.+..+ .|.+-|..=-.+|++.|.++.|++=-+.-... .|.. ..|..|=.++...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 5567888888888888875 47778888888899999888888766665553 3443 6788888888888888888
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 102 EWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
.+.|++-.. +.|+-.+|-.=|..-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 888766554 466666666555543
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=1.2 Score=32.58 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC---CcchHHHHHHHHHHcCCCcchHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG---ALELGEWIKTYIDKNKVKNDIFAGNA 122 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (181)
|...|-.|-..|...|+++.|..-|..-.+-- .+|...+..+-.++.... .-.++..+|++..+.. |+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~------ 225 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PA------ 225 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--Cc------
Confidence 77789999999999999999999998876631 234555555555554433 3345778888887653 22
Q ss_pred HHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 123 ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
|+.+-..+-..+...|++.+|...|+.|.+. -|....+..+|+
T Consensus 226 ---------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 226 ---------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred ---------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 2223333444555699999999999999985 455555555554
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.61 E-value=0.11 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999999954
No 192
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.59 E-value=0.013 Score=38.06 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=63.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCc
Q 038237 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 132 (181)
+|..+.+.+.+....++++.+...+..-+....+.++..|++.++.+....+++ ..+ .+-...++..|-+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~----~yd~~~~~~~c~~~-- 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSN----NYDLDKALRLCEKH-- 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSS----SS-CTHHHHHHHTT--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---ccc----ccCHHHHHHHHHhc--
Confidence 455555666666667777777665544556667777777777766666666555 111 11112233333332
Q ss_pred hHhHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCChhhHHHHHhhhc
Q 038237 133 KFTWTTMIVGLAISGNGDKALDMFSQMLRA-------SIKPDEVAYVGVLSART 179 (181)
Q Consensus 133 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~li~~~~ 179 (181)
..|...+..|.+.|++++|++++..+..- .-.+|...|..+++.|.
T Consensus 84 -~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 84 -GLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCL 136 (143)
T ss_dssp -TSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHC
T ss_pred -chHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 24555555666677777766653333211 12346677777776664
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.88 Score=33.33 Aligned_cols=99 Identities=7% Similarity=-0.006 Sum_probs=81.2
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
|...|-.|-..|.+.|+.+.|..-|....+ +++..+..+-.++... .+..++..+|++..+..- -|+.....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence 777899999999999999999999998875 5777777666655444 356799999999988643 366777788
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
-..+...|++.+|...|+.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999987543
No 194
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.45 E-value=0.57 Score=37.03 Aligned_cols=108 Identities=12% Similarity=0.037 Sum_probs=74.5
Q ss_pred ccHHHHhhhcCC--CChhHHHHHH-HHHhccCCHHHHHHHhcccCC--C-----cHHHHHHHHHHHHhcCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIV-SGYINREQVDIARQCFDQMPE--R-----DYVLWTTMIDGYLRVNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (181)
+.|.+++..+.. |+...|...- +.+...|++++|.+.|+.... . ....+--+...+.-.++|++|.+.|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 468888888887 8887776553 666788999999999997653 1 22233345556777789999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHH-HccCCc-------chHHHHHHHHHH
Q 038237 72 EIQTSNIMGDEFTIVSILTAR-ANLGAL-------ELGEWIKTYIDK 110 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~ 110 (181)
.+.+..- .+..+|.-+.-+| ...++. ++|..+|.+...
T Consensus 330 ~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9988543 2444444443333 345666 777778776653
No 195
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.09 E-value=0.19 Score=24.19 Aligned_cols=26 Identities=8% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.03 E-value=2.8 Score=34.20 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=94.7
Q ss_pred CChhHHH--HHHHHHhccCCHHHHHHHhcccCCCcHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 14 KDVISYT--AIVSGYINREQVDIARQCFDQMPERDYVLWTTM---IDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 14 ~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
|.+..|+ .+...+-+.|+++.|...++.....++..+... -..+...|+.++|..++++..+-.. ||...=+.-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKc 445 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKC 445 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHH
Confidence 5555554 467889999999999999999988666655544 4678889999999999999887643 566665577
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHH--HHHHHcCChhHHHHHHHHHH
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI--VGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~ 160 (181)
..-..++++.++|..+...+.+.|. +.. +.|-.+-| .|-.+= .+|.+.|++..|+.=|+.+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~--~~~--~~L~~mqc------mWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF--GAV--NNLAEMQC------MWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc--chh--hhHHHhhh------HHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 7788899999999999999988876 222 22222111 121111 23555666666666665554
No 197
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.02 E-value=0.43 Score=37.13 Aligned_cols=64 Identities=8% Similarity=-0.106 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE----FTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. ..|..+-.+|.+.|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999997775 3664 35889999999999999999999988875
No 198
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.37 Score=35.76 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCC---------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPER---------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (181)
+..+-..++..-....+++.+...+-.++.. +.++|-.++. .-+.++++.++..-...|+-||.++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 4445566666667778888888877777642 3344444433 33677999999999999999999999
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 86 VSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
+.+|+.+.+.+++.+|.++.-.|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998887777665
No 199
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.78 E-value=1.4 Score=29.72 Aligned_cols=90 Identities=13% Similarity=-0.021 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------chH
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------VKF 134 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------~~~ 134 (181)
++.+.-+.+.+++|+...+..+++.+.+.|.+.. +.++.+.++-+|.......+-.+.... -..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555677888888888888888888876543 344444444444333333222222111 223
Q ss_pred -hHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 135 -TWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 135 -~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.+..+++.+...|+.-+|+++.++..
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 67778888888999999999998863
No 200
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.78 E-value=1.7 Score=34.39 Aligned_cols=138 Identities=11% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHhccCCHHHHHHHhcccCC--C---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHc
Q 038237 21 AIVSGYINREQVDIARQCFDQMPE--R---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARAN 94 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 94 (181)
.+-.++-+.|+.++|.+.|++|.+ | .......||.++...+++.++..++.+-.+...+. -..+|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 355566688999999999999964 2 34478899999999999999999998864432222 23667766644433
Q ss_pred cCCc---c------------hH-HHHHHHHHHcCCCcchHHHH-------HHHHHhHhcCchHhHHHHHHHHHHcCChhH
Q 038237 95 LGAL---E------------LG-EWIKTYIDKNKVKNDIFAGN-------ALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 95 ~~~~---~------------~a-~~~~~~~~~~~~~~~~~~~~-------~ll~~~~~~~~~~~~~~li~~~~~~~~~~~ 151 (181)
.++- + .| +.+.+.+... |.+.-|- .--..+.+.||...-.-....+..-.+.+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefN---PHVp~YLLe~K~LilPPehilkrGDSEAiaYAf~hL~hWk~veG 420 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN---PHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLQHWKRVEG 420 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhC---CCCchhhhccCCCCCChHHhcCCCcHHHHHHHHHHHHHHhcCHh
Confidence 3331 1 11 2233333322 1111111 111234556677766666677777888999
Q ss_pred HHHHHHHHHH
Q 038237 152 ALDMFSQMLR 161 (181)
Q Consensus 152 a~~~~~~m~~ 161 (181)
|+.+++.-.+
T Consensus 421 AL~lL~~twe 430 (539)
T PF04184_consen 421 ALNLLHCTWE 430 (539)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 201
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.61 E-value=1.2 Score=28.76 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
......++...+.|.-+.-..+...+.+. -.+++...-.+-.+|.+ .|+..++.+++++..+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~k----------------lg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKK----------------LGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHH----------------hcchhhHHHHHHHHHHh
Confidence 34556677777777777777777777653 34455555555555555 77777777777777777
Q ss_pred CC
Q 038237 163 SI 164 (181)
Q Consensus 163 ~~ 164 (181)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 65
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.45 E-value=0.47 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788888999999999999999985
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.38 E-value=1.4 Score=28.57 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+....+..++...+.|+-+..-+++.++.+ +-.|++...-.+..||.+.|+..++.+++.+.-+.|.+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555677888888999999998899988875 33467888889999999999999999999999888865
No 204
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.35 E-value=2.1 Score=31.40 Aligned_cols=107 Identities=14% Similarity=0.000 Sum_probs=69.2
Q ss_pred cCCHHHHHHHhcccCC-----CcHHHHHHHHHHHHh-cC-cHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHccCCcch
Q 038237 29 REQVDIARQCFDQMPE-----RDYVLWTTMIDGYLR-VN-RFREALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
+..+.+|+++|+.... .|..+...++..... .+ ....-.++.+-+. +.+-.++..+...+++.+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4456777888873221 366666666666655 22 3344444444443 33456778888888999999999988
Q ss_pred HHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHh
Q 038237 101 GEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFT 135 (181)
Q Consensus 101 a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~ 135 (181)
-.++++..... +..-|...|..+|+.-..+||...
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 88888887766 666666666666666666444433
No 205
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.32 E-value=0.87 Score=38.92 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
|+.|-..|....+...|.+-|+...+ -+..++....+-|++...++.|..+
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 55555555555555555555555544 2444555666666666666666665
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=0.73 Score=39.61 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
-|+..|--+++...+.|.+++-.+.+.-.++ +-+..=+.||-+|++.++..+..+++.- ||......+-+-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~g-------pN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAG-------PNVANIQQVGDR 1203 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcC-------CCchhHHHHhHH
Confidence 4677899999999999999999998876554 3444456899999999998776655432 555555555555
Q ss_pred HHccCCcchHHHHHHHHHHcC--------------------CCcchHHHHHHHHHhHhcC--------------chHhHH
Q 038237 92 RANLGALELGEWIKTYIDKNK--------------------VKNDIFAGNALIDMYCKCT--------------VKFTWT 137 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~ll~~~~~~~--------------~~~~~~ 137 (181)
|...+.++.|.-++..+-..+ -..+..||.-+-.+|...+ ...-..
T Consensus 1204 cf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELE 1283 (1666)
T ss_pred HhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHH
Confidence 555566655555544332210 0123445555555554333 233345
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 038237 138 TMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m 159 (181)
-+|.-|-..|-+++-..+++.-
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhh
Confidence 5666666666666666665543
No 207
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=93.25 E-value=0.64 Score=29.64 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 65 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
+..+.+..+....+.|++......+++|.+.+|+..|..+|+.++.+ +.+...+|..++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 45666777788899999999999999999999999999999999876 2222235555554
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.08 E-value=1.6 Score=28.49 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 57 YLRVNRFREALTLFQEIQTSNI--MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
..+.|++++|.+.|+.+...-- .-....--.++.++.+.+++++|...++++++.....-..-|-..+.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3556677777777777765310 1122344566777777777777777777777764432233444444443
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.88 E-value=2.7 Score=30.49 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-c-chHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSN----IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-N-DIFAGNA 122 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ 122 (181)
.|+.-++. .+.|++.+|...|....+.. ..||..-| |-.++...|++++|..+|..+.+.-.. | .+..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 47776655 56677999999999987643 44555444 889999999999999999998876222 1 1122222
Q ss_pred HHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 123 ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+-.+..+.|+.++|-..|++..++
T Consensus 221 ----------------lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 ----------------LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred ----------------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 233445599999999999999876
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.86 E-value=3.4 Score=32.81 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHhcccCC--CcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHcC---CCccHHHHHH
Q 038237 18 SYTAIVSGYIN----REQVDIARQCFDQMPE--RDYVLWTTMID-GYLRVNRFREALTLFQEIQTSN---IMGDEFTIVS 87 (181)
Q Consensus 18 ~~~~li~~~~~----~~~~~~a~~~~~~m~~--~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ 87 (181)
.|...+..++. ....+.|.++++.+.+ |+...|.-.-. .+...|++++|++.|++..... -......+--
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 35555555554 4578999999999987 88887765554 3455689999999999754311 1122344555
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCCh-------hHHHHHHHHHH
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG-------DKALDMFSQML 160 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~ 160 (181)
+.-.+.-..+|++|...|..+.+..-. +..+|.-+.-+| +...|+. ++|.++|++..
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c---------------~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC---------------LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH---------------HHhhccchhhhhhHHHHHHHHHHHH
Confidence 666677889999999999999986333 334444333332 2235555 88888888774
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.77 E-value=5.5 Score=33.83 Aligned_cols=86 Identities=12% Similarity=0.168 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHh--ccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 14 KDVISYTAIVSGYI--NREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 14 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
||. .|..++.++. |.|+.++|..+++.... .|..|...+-..|-..++.++|..+|++..+. -|+..-...+
T Consensus 40 Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~l 116 (932)
T KOG2053|consen 40 PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHL 116 (932)
T ss_pred CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHH
Confidence 554 4566666654 67888888888777664 37778888888888889999999999887654 4777777777
Q ss_pred HHHHHccCCcchHH
Q 038237 89 LTARANLGALELGE 102 (181)
Q Consensus 89 ~~~~~~~~~~~~a~ 102 (181)
+.++.|.+++.+-.
T Consensus 117 FmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888777665433
No 212
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.73 E-value=0.4 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+++.+-..|...|++++|.+++++...-
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888899999999999999998653
No 213
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=2.8 Score=30.29 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=56.9
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|+...+ | |.++|--=+...--.|+.-+|.+-+.+... .|..+|.-+-..|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 355666665553 3 333444333333334444444444444432 4777777777777777777777777777654
Q ss_pred cCCCccHHHHHHHHHHH---HccCCcchHHHHHHHHHHcCC
Q 038237 76 SNIMGDEFTIVSILTAR---ANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 113 (181)
.. +.+...+.-+-+.+ +...+.+.+...+.+-.+...
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 31 11222222333332 223345556666666665543
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=92.42 E-value=0.79 Score=30.67 Aligned_cols=89 Identities=10% Similarity=-0.024 Sum_probs=63.8
Q ss_pred HHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 22 IVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
.-.-+-+.|++++|..+|+-+.. + +..-|-.|-..+-..+.+++|+..|...-..+.. |...+--.-..+...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 34445678999999999998764 3 4444555666666678899999999887654431 333344466778888999
Q ss_pred chHHHHHHHHHHc
Q 038237 99 ELGEWIKTYIDKN 111 (181)
Q Consensus 99 ~~a~~~~~~~~~~ 111 (181)
+.|...|+..+..
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888874
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.38 E-value=2.6 Score=29.19 Aligned_cols=136 Identities=7% Similarity=-0.028 Sum_probs=75.6
Q ss_pred HHHHHHhccCCHHHHHHHhcccCC--C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHH
Q 038237 21 AIVSGYINREQVDIARQCFDQMPE--R----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARA 93 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~ 93 (181)
.....+.+.|++++|.+.|+.+.. | -....-.+..++.+.|++++|...++++.+.- -.|.. -+...+.|.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344556788999999999999974 2 23345567889999999999999999987632 12221 1222222222
Q ss_pred c-------------cCCcchHHHHHHHHHHcCCC----cchHHHHHHHH-HhHhcCchHhHHHHHHHHHHcCChhHHHHH
Q 038237 94 N-------------LGALELGEWIKTYIDKNKVK----NDIFAGNALID-MYCKCTVKFTWTTMIVGLAISGNGDKALDM 155 (181)
Q Consensus 94 ~-------------~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 155 (181)
. .+....|...|+.+++.-+. ++....-..+. ..++ .--.+..-|.+.|.+..|..-
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~-----~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE-----HELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH-----HHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcccHHHHHHH
Confidence 1 11233566667777655221 11111111111 1111 112245557788888888888
Q ss_pred HHHHHHc
Q 038237 156 FSQMLRA 162 (181)
Q Consensus 156 ~~~m~~~ 162 (181)
++.+.+.
T Consensus 164 ~~~v~~~ 170 (203)
T PF13525_consen 164 FQYVIEN 170 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 216
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.35 E-value=0.8 Score=33.90 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=74.9
Q ss_pred cHHHHhhhcCC----CChhHHHHHHHHHhc--c----CCHHHHHHHhcccCC-------CcHHHHHHHHHHHHhcC--cH
Q 038237 3 FTLEIFGTMKN----KDVISYTAIVSGYIN--R----EQVDIARQCFDQMPE-------RDYVLWTTMIDGYLRVN--RF 63 (181)
Q Consensus 3 ~a~~~~~~~~~----~~~~~~~~li~~~~~--~----~~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~--~~ 63 (181)
+.+++++.+.+ .+..+|-+....... . .....|.++|+.|++ ++-.++..|+..-...- -.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~ 159 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELA 159 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHH
Confidence 44556666654 454555443333222 2 235788999999985 46667788777622221 24
Q ss_pred HHHHHHHHHHHHcCCCccH-HHHHHHHHHHHccCC---cchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 64 REALTLFQEIQTSNIMGDE-FTIVSILTARANLGA---LELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
+.+.++|+.+...|+..+- .-+.+-+-++..... ...+..+++.+.+.|+++....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 6778888889998876544 334444444443332 33577889999999999877776643
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.83 E-value=1.5 Score=28.22 Aligned_cols=122 Identities=10% Similarity=0.063 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
......+|..+.+.+.......+++.+...+. .+...++.++..+++...- ... +.+... ++.+.....++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~-~ll---~~l~~~---~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQ-KEI---ERLDNK---SNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHH-HHH---HHHHhc---cccCCHHHHHHH
Confidence 34456788899888999999999999988773 6778899999999886432 222 333311 122222334444
Q ss_pred hHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH----H---Hc-CCCCChhhHHHHHhhhc
Q 038237 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM----L---RA-SIKPDEVAYVGVLSART 179 (181)
Q Consensus 127 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~---~~-~~~p~~~t~~~li~~~~ 179 (181)
|.+.+ .|...+..|.+.|++++|+++.=+- . +- .-.-+...|..+++.|-
T Consensus 79 c~~~~---l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAK---LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL 136 (140)
T ss_pred HHHcC---cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44332 2445555555555555555444221 0 00 01236667877777654
No 218
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.79 E-value=0.72 Score=23.17 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 219
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.78 E-value=5.8 Score=34.04 Aligned_cols=129 Identities=8% Similarity=-0.080 Sum_probs=79.3
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC-------Cc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHH----cCCC--c-cH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE-------RD--YVLWTTMIDGYLRVNRFREALTLFQEIQT----SNIM--G-DE 82 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~ 82 (181)
.+.+-..+...|++++|...+++... +. ..+...+-..+...|++++|.+.+++... .+.. | ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34455566778999888888877652 11 22344556667788999999888877644 2211 1 12
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcC--CCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
..+..+-..+...|++++|...+++..... ..+... ...+..+...+...|+.+.|.+.+++..
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ--------------LQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444455666799999988887765531 111111 1122334445566899999988888875
Q ss_pred H
Q 038237 161 R 161 (181)
Q Consensus 161 ~ 161 (181)
.
T Consensus 640 ~ 640 (903)
T PRK04841 640 N 640 (903)
T ss_pred H
Confidence 4
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.70 E-value=5.5 Score=31.41 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
.-.+.++.-+-+.|..+.|+++-++-. .-.+-..+.|+++.|.++-++. .+...|..|-+...+.|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD--------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcC
Confidence 347888888999999999998876532 2233445566666666554332 25557777777777777
Q ss_pred CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------chHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------VKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 97 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
+++.|+..+++..+. ..|+-.|.-.| ...-+|..+.++...|+.++..+++.+-
T Consensus 362 ~~~lAe~c~~k~~d~---------~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 362 NIELAEECYQKAKDF---------SGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp BHHHHHHHHHHCT-H---------HHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHhhcCc---------cccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777777766655432 22222222222 1223566666666678888887777654
No 221
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.62 E-value=3.7 Score=30.20 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=83.9
Q ss_pred ccHHHHhhhcCC-----CChhHHHHHHHHHhccC--CHHHHHHHhcccC-----CCcHHHHHHHHHHHHhcCcHHHHHHH
Q 038237 2 GFTLEIFGTMKN-----KDVISYTAIVSGYINRE--QVDIARQCFDQMP-----ERDYVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
.+|+++|+.... .|..+-..+++...... ....-.++.+-+. .++..+...+|..+++.+++.+.+++
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~f 224 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQF 224 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHH
Confidence 467778874321 47777777777777622 3333344444443 25788889999999999999999999
Q ss_pred HHHHHHc-CCCccHHHHHHHHHHHHccCCcchHHHHHHH-----HHHcCCCcchHHHHHHHH
Q 038237 70 FQEIQTS-NIMGDEFTIVSILTARANLGALELGEWIKTY-----IDKNKVKNDIFAGNALID 125 (181)
Q Consensus 70 ~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~ 125 (181)
++.-... +..-|...|...|+.....|+.+-...+..+ +++.++..+...-..|-.
T Consensus 225 W~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 225 WEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 9987654 5566889999999999999998665555432 223344545444444433
No 222
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.60 E-value=3.8 Score=29.39 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=33.0
Q ss_pred HHHHhccCCHHHHHHHhcccCC--CcH-HHH---HHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 23 VSGYINREQVDIARQCFDQMPE--RDY-VLW---TTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~--~~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
...+.+.|++++|.+.|++... |+. ... -.+..++.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556777777777777764 322 221 23445667777777777777777653
No 223
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.42 E-value=2.6 Score=27.11 Aligned_cols=85 Identities=9% Similarity=0.100 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.-..++..+.+.+..+.....++.+.. .+...++.++..|++.. .++.++.+.. ..+......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 346788888888999999999888764 36778999999999874 3455555552 1344445568999999
Q ss_pred cCCcchHHHHHHHHH
Q 038237 95 LGALELGEWIKTYID 109 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~ 109 (181)
.+.++++.-++..+.
T Consensus 82 ~~l~~~~~~l~~k~~ 96 (140)
T smart00299 82 AKLYEEAVELYKKDG 96 (140)
T ss_pred cCcHHHHHHHHHhhc
Confidence 999988888887764
No 224
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.36 E-value=0.81 Score=22.21 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666677777777777777766543
No 225
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.36 E-value=0.022 Score=37.02 Aligned_cols=120 Identities=12% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 22 IVSGYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
+|..+.+.+.++...+.++.+.. .+....+.++..|++.++.++..++++.... ..+ ..+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~-----~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL-----DKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C-----THHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCH-----HHHHHHHHhcch
Confidence 34555555555555555555441 3455666666677766666666666552111 111 234555555555
Q ss_pred cchHHHHHHHHHHcCCC----cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCC
Q 038237 98 LELGEWIKTYIDKNKVK----NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~ 148 (181)
++.+.-++.++....-- -...-+...+..+.+.++...|..++..+...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 55555555544332111 1112222333444444455666666665554443
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.16 E-value=3 Score=27.29 Aligned_cols=75 Identities=7% Similarity=0.088 Sum_probs=54.8
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCCC------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPER------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSILTAR 92 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~ 92 (181)
-.--....+.|++++|.+.|+.+... ...+--.|+.+|.+.+++++|...+++..+..- .|+ .-|-..+.|+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL 92 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHH
Confidence 33344456789999999999999862 445666789999999999999999999987542 232 3455556665
Q ss_pred Hcc
Q 038237 93 ANL 95 (181)
Q Consensus 93 ~~~ 95 (181)
+..
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 543
No 227
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=3.5 Score=28.11 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=70.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHH-----HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH---
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMID-----GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT--- 90 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~--- 90 (181)
|-..++. .+.+..++|+.-|.++...+...|-.|-. ...+.|+...|...|++.-...-.|-..-=..-++
T Consensus 62 flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 62 FLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 4443332 45566677777777776654444443322 33455777777777777766544444331111111
Q ss_pred HHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
.+...|.++....-.+.+-..+-...... + .+|--+--+.|++.+|..+|..+...--.|-
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sA---------r-------EALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSA---------R-------EALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHH---------H-------HHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 23455666665555554433322211111 1 2333333469999999999999987644443
No 228
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.95 E-value=7.8 Score=31.80 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcC-CCcchHHHHHHHHHhH------hcC-----------------c-hHhHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYC------KCT-----------------V-KFTWT 137 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~------~~~-----------------~-~~~~~ 137 (181)
..|..+..+..-.|+...|..++++.++.. ..|+...+.-.....- +.| | ...-.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 445566666667788888888888888764 3455555543333222 222 1 22223
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.--.-+.+.++.++|..++..+... -||-.-|.-.+..|
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 3344566788999999999999875 46666666555443
No 229
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.92 E-value=7.3 Score=31.41 Aligned_cols=82 Identities=7% Similarity=0.055 Sum_probs=52.5
Q ss_pred HhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHH
Q 038237 26 YINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
+.+.|++.+|.-.|+...+. +..+|.-|-......++-..|+..+.+..+..-. |......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 45788888888888887753 5556777777777777777777777777764321 3444555555555555555555
Q ss_pred HHHHHH
Q 038237 103 WIKTYI 108 (181)
Q Consensus 103 ~~~~~~ 108 (181)
..++.-
T Consensus 374 ~~L~~W 379 (579)
T KOG1125|consen 374 KMLDKW 379 (579)
T ss_pred HHHHHH
Confidence 555544
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.86 E-value=6.2 Score=31.40 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=55.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHh
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMY 127 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 127 (181)
.+-....+.|+.++|.+.|.+|.+.. ..-+......|+.++...+++.++..++.+.-+. ..+.....|+..+-..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 34555567799999999999997653 2224457789999999999999999999997543 2344556677655443
No 231
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=90.76 E-value=0.36 Score=31.05 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=27.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
-|.-.+|..+|++|.+.|-+|| .|+.|+..+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 6777889999999999999998 4888887764
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.63 E-value=5.2 Score=29.25 Aligned_cols=148 Identities=8% Similarity=0.030 Sum_probs=78.0
Q ss_pred ccHHHHhhhcCC--CC-hhHHHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHH---HhcCcHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KD-VISYTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGY---LRVNRFREALTLFQE 72 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~---~~~~~~~~a~~~~~~ 72 (181)
++|.++.+.+.+ |+ +.++..-+..+.+.++.+.+.+++..|... ....+..++..+ ... ....+...++.
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~ 182 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDY 182 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHH
Confidence 345566665543 54 445666677777778888888888887752 334455555544 332 34566777777
Q ss_pred HHHcCCCccHH-HHHHHHH----HHHccCC------cchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHhHHHHH
Q 038237 73 IQTSNIMGDEF-TIVSILT----ARANLGA------LELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMI 140 (181)
Q Consensus 73 m~~~~~~p~~~-~~~~l~~----~~~~~~~------~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~li 140 (181)
+....+.|... ....++- ...+.++ ++....++..+... +.+.+..+-..+... .||..-
T Consensus 183 ~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~L--------LW~~~~ 254 (278)
T PF08631_consen 183 LLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTL--------LWNKGK 254 (278)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHHHH
Confidence 66655555553 1111111 1112112 23333344433332 334444444443332 344433
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 038237 141 VGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m 159 (181)
. +-+.++++.|.++|+--
T Consensus 255 ~-~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 K-HYKAKNYDEAIEWYELA 272 (278)
T ss_pred H-HHhhcCHHHHHHHHHHH
Confidence 3 34588999999999843
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.63 E-value=6.4 Score=30.24 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHc---cCCcchHHHHHHHHHHcCCCcchHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSN---IMGDEFTIVSILTARAN---LGALELGEWIKTYIDKNKVKNDIFA 119 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (181)
+..+.-.++-+|....+++...++.+.|.... +.-....---..-++.+ .|+-++|.+++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 33344466667999999999999999998752 11122222233344455 8999999999999777777778888
Q ss_pred HHHHHHHhHhcCchHhHHHHHHH-HHHcCChhHHHHHHHHHHH
Q 038237 120 GNALIDMYCKCTVKFTWTTMIVG-LAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 120 ~~~ll~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~ 161 (181)
|..+-..|-.. .+.+ +.....+++|.+.|++--+
T Consensus 220 ~gL~GRIyKD~--------~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDL--------FLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHH--------HHHcCccchHHHHHHHHHHHHHHc
Confidence 88877777541 1111 1122346777777776554
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.59 E-value=7.2 Score=30.76 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=80.1
Q ss_pred ccHHHHhhhcCC---CC------hhHHHHHHHHHhccCCHHHHHHHhcccCC-CcHHHHHHHHHHH--HhcCcHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KD------VISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGY--LRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~--~~~~~~~~a~~~ 69 (181)
.+|+++|.+.-+ .+ .+.-+.++++|... +++.......+.++ .....|-.+..+. .+.+.+++|.+.
T Consensus 23 ~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ 101 (549)
T PF07079_consen 23 QESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQA 101 (549)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 567777777654 12 22345677887754 34444444444443 1233444444443 456788888888
Q ss_pred HHHHHHc--CCC------------ccHHHHHHHHHHHHccCCcchHHHHHHHHHHc----CCCcchHHHHHHHHHhHhc
Q 038237 70 FQEIQTS--NIM------------GDEFTIVSILTARANLGALELGEWIKTYIDKN----KVKNDIFAGNALIDMYCKC 130 (181)
Q Consensus 70 ~~~m~~~--~~~------------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~ 130 (181)
+..=... +-. +|..-=++....+...|++.++..+++++... ...-+..+|+.++-.++++
T Consensus 102 ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 102 LSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 7665433 211 22333456778888999999999999888765 4447889999977777764
No 235
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.56 E-value=10 Score=32.55 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC-------C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc--CCCc--cH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE-------R----DYVLWTTMIDGYLRVNRFREALTLFQEIQTS--NIMG--DE 82 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p--~~ 82 (181)
++..+-..+...|+++.|.+.+++... + ....+..+-..+...|++++|...+.+.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 344555667788999999888776542 1 1223444455667779999999988886542 1112 23
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
..+..+.......|+.+.|...++....
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455667788999999888877754
No 236
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.45 E-value=4.4 Score=28.07 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCccHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN---IMGDEFTIV 86 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~ 86 (181)
|++...-.+-.++.+.|+..+|...|++... .|....-.+..+....+++..+...++++-+.+ -.||. .-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 5666666788889999999999999988875 477777777777777889999999999887643 34544 33
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
.+-+.+...|...+|+.-|+.....-..|
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 56778888899999999998888763333
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=90.39 E-value=3.9 Score=27.43 Aligned_cols=92 Identities=9% Similarity=-0.069 Sum_probs=62.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC-CcchHHHHHHHHHhHhc
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCKC 130 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~ 130 (181)
..-..+...|++++|..+|.-+...+.. |..-+..|-..+-..+.+++|...+......+. .|.+..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f----------- 109 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF----------- 109 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc-----------
Confidence 3444567789999999999998875532 445555666666678899999998877665432 222221
Q ss_pred CchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 131 TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 131 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
-.-.++...|+.+.|.+.|+...++
T Consensus 110 -------~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 110 -------FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred -------hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 2223445578888888888877763
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.35 E-value=3.9 Score=27.31 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=42.1
Q ss_pred HHHHhccCCHHHHHHHhcccC--CCcHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 23 VSGYINREQVDIARQCFDQMP--ERDYVLWTTM-IDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
+..-.+.++.+++..+++-++ +|.......+ -.-+.+.|+|.+|.++|+++.... |.......|+..|..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 334456778888888888776 3433333222 224567788899999998876653 333333444444443
No 239
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.27 E-value=3.1 Score=28.28 Aligned_cols=93 Identities=3% Similarity=-0.014 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCC------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---cCCCccHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPER------DYVLWTTMIDGYLRVNRFREALTLFQEIQT---SNIMGDEFTIVSI 88 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l 88 (181)
.+..+.+.|.+.|+.++|.+.|..+... -...+-.+|......+++..+.....+... .|-+++...--.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5778889999999999999999999863 333566788888888999999988877654 3333333332233
Q ss_pred HHHH--HccCCcchHHHHHHHHHH
Q 038237 89 LTAR--ANLGALELGEWIKTYIDK 110 (181)
Q Consensus 89 ~~~~--~~~~~~~~a~~~~~~~~~ 110 (181)
..|+ ...+++..|.+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 3333 346788888777766543
No 240
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=90.19 E-value=10 Score=31.82 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=86.3
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVSILTARAN 94 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 94 (181)
|......+.+.+..++|..-+.+.... .+..|...-..+-..|.+++|.+.|..-..- .|+ +.+..++-..+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHH
Confidence 556667777788888887776666653 3334554445566677888888888877664 344 3667778888888
Q ss_pred cCCcchHHH--HHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 95 LGALELGEW--IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 95 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|+...+.. ++..+.+.+.. +...|..|-.. +-+.|+.+.|.+.|.--.+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v----------------~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEV----------------FKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHH----------------HHHccchHHHHHHHHHHHhh
Confidence 888777776 77777776544 44455555444 44499999999999887654
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.05 E-value=4.7 Score=31.77 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
.-.....+.|+++.|.++-++.. +...|..|-+...+.|+++-|.+.|.+... +..|+--+.-.|+.+.
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 34556678899999998877665 566899999999999999999998887654 2345555666677766
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHH
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 153 (181)
...+.+.....|-. +...-+.++. || ....++.+.+.|++-+|.
T Consensus 392 L~kl~~~a~~~~~~-n~af~~~~~l-----gd---~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 392 LSKLAKIAEERGDI-NIAFQAALLL-----GD---VEECVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHHHHHTT-H-HHHHHHHHHH-----T----HHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHccCH-HHHHHHHHHc-----CC---HHHHHHHHHHcCCchHHH
Confidence 66666665555432 2222222221 11 123455566666666553
No 242
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=2.4 Score=31.72 Aligned_cols=99 Identities=10% Similarity=0.043 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTS---NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (181)
.+.+...+++.-....+++++...+-++.+. -..|+...+ ++++-|.+. +++++..++..-++.|+-||.++...
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHH
Confidence 6667777888777778899999988887653 234444433 445555554 45688888888889999999988888
Q ss_pred HHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 123 LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 123 ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+|+.+.+ .++..+|..+.-.|..+
T Consensus 141 l~D~flk----------------~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLK----------------KENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHh----------------cccHHHHHHHHHHHHHH
Confidence 8888777 66666666666666544
No 243
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.37 E-value=6.3 Score=33.62 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhccc
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQM 42 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m 42 (181)
.+|..|.+.|.+..+++-|.=.+..|
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhh
Confidence 34555555555544444444433333
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.32 E-value=1.3 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..|..+-..|...|++++|++.|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888899999999999999998763
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.24 E-value=2.3 Score=33.38 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHcC-CCcchHHHHHHHHHhHhcC-----------------chHhHHHHHHHH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKNK-VKNDIFAGNALIDMYCKCT-----------------VKFTWTTMIVGL 143 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~-----------------~~~~~~~li~~~ 143 (181)
+..|...+.+..+..-++.|..+|-+..+.| ..++++++++++..++... +...-+-.+.-+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3455666777777777777778888877777 5677777788777777654 222223334444
Q ss_pred HHcCChhHHHHHHH
Q 038237 144 AISGNGDKALDMFS 157 (181)
Q Consensus 144 ~~~~~~~~a~~~~~ 157 (181)
.+-++-..|..+|+
T Consensus 477 i~inde~naraLFe 490 (660)
T COG5107 477 IRINDEENARALFE 490 (660)
T ss_pred HHhCcHHHHHHHHH
Confidence 55566666666666
No 246
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.21 E-value=9 Score=33.29 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=71.8
Q ss_pred cHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCCCc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPERD-----YVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 3 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+|.+-|++..+ -+...+..+.+.|++...++.|..+.-..-+.+ ..-|--.--.|.+.++..++..-|..-.
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL 589 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL 589 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence 35555555544 345568888999999999999988833222211 1112223335566777788877777766
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
+...+ |...|..+..+|.+.|++..|..+|.+....
T Consensus 590 R~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 590 RTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred cCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 64332 6677888888888888888888888776654
No 247
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.04 E-value=4.8 Score=26.45 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---------CcHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---------RDYVLWTTMIDGYLRVNR-FREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
.++++.-....+.+.-..++++.+.. .+...|++++.+.+++.- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55566666666666666666665542 244456666666655544 33455666666666666666666666
Q ss_pred HHHHHcc
Q 038237 89 LTARANL 95 (181)
Q Consensus 89 ~~~~~~~ 95 (181)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6666654
No 248
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=88.54 E-value=6.2 Score=27.69 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-hHHHHHHHHHHcCCCcchHHH
Q 038237 46 DYVLWTTMIDGYLRVNR----FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-LGEWIKTYIDKNKVKNDIFAG 120 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 120 (181)
+..|.-.||..+-+... +.+-.++|.-+.. |-.+...+=+-+.-. .-.++-+.+...|+..+..++
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~---------Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~ 162 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ---------WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFY 162 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH---------HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHH
Confidence 77788888888877642 4555555554433 344455554333322 234566667777999999999
Q ss_pred HHHHHHhHhc-CchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 121 NALIDMYCKC-TVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 121 ~~ll~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+.+++-|.+. +....+.-.|.+|.+....-++.+-++.-.+
T Consensus 163 ~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~ 204 (221)
T KOG0037|consen 163 NLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQ 204 (221)
T ss_pred HHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999987 5677788899999887666666665554443
No 249
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.46 E-value=3.6 Score=30.05 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHH-----HHHHhcCcHHHHHHHHHHHHHcCCCccHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE----RDYVLWTTMI-----DGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (181)
++.....+.+.-.+.|+++.|...|++..+ -|-.+.+.++ ..|.-.+++.+|...|++.....- -|+...
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~ 289 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVAN 289 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-Cchhhh
Confidence 455566666667788999999998886653 2333333332 234445678888888888776532 133444
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
|.=.-...-.|+..+|...++.+++. .|...+-++++
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 44334444568888999999988876 44444444444
No 250
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=88.39 E-value=7.5 Score=27.90 Aligned_cols=66 Identities=9% Similarity=-0.025 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHH----HHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT----IVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
+...+-.....+.+.|++++|.+.|+++...- |+... .-.+..++.+.+++++|...+++..+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44433344555577899999999999998743 33322 23556788899999999999999988743
No 251
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=11 Score=29.53 Aligned_cols=48 Identities=8% Similarity=0.002 Sum_probs=29.6
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHH
Q 038237 56 GYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 104 (181)
.+...+++++|.=-|.....-. +-+..+|.-|+..|...|++.+|.-.
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 4455566666666666544321 12447777788888777777766543
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.02 E-value=5.8 Score=28.80 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCcc-HHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--R----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGD-EFTIVSIL 89 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~l~ 89 (181)
.|+..+.. .+.|++..|.+-|....+ | ...++-=|-..+...|++++|-..|..+.+.- -.|- +..+-.|-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 47777766 467779999999998875 2 33344457789999999999999999987642 2222 26677888
Q ss_pred HHHHccCCcchHHHHHHHHHHc
Q 038237 90 TARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
....+.|+-++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999999886
No 253
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=87.35 E-value=1.6 Score=32.21 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=38.7
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
....||..|..-.+.|+.++|+.++++.+..|+.--..||..-+++
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~~ 301 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVKG 301 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhhc
Confidence 3445788999999999999999999999999998888887766543
No 254
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=87.26 E-value=1.6 Score=27.05 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.-|..++.-|-..|.+++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999999988
No 255
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.18 E-value=1.6 Score=22.20 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=11.8
Q ss_pred HHHHHHccCCcchHHHHHHHHHH
Q 038237 88 ILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
+..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 256
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=87.11 E-value=6.8 Score=27.16 Aligned_cols=57 Identities=7% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCC--------------CccHHHHHHHHHHHHccCCcchHHHHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNI--------------MGDEFTIVSILTARANLGALELGEWIKT 106 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 106 (181)
--++|..|.+.-+|.+..++++.|.+..+ .+.-...|.....|.+.|.++.|..+++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34788889999999999999998876544 2344568889999999999999999987
No 257
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.10 E-value=5.7 Score=25.13 Aligned_cols=102 Identities=15% Similarity=0.029 Sum_probs=68.5
Q ss_pred HHHHHhccCCHHHHHHHhcccCCC---c---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc----HHHHHHHHHH
Q 038237 22 IVSGYINREQVDIARQCFDQMPER---D---YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD----EFTIVSILTA 91 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~ 91 (181)
+-.++-..|+.++|..+|+..... + ...+-.+-..+...|++++|..+|++..... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 345566789999999999988752 2 2345556678888899999999999987642 33 1222223346
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
+...|+.++|...+-.... ++..-|.--|..|..
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 6778999998887765543 233356665555543
No 258
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.10 E-value=1.4 Score=19.30 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=9.9
Q ss_pred HHHHHHhccCCHHHHHHHhc
Q 038237 21 AIVSGYINREQVDIARQCFD 40 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~ 40 (181)
.+-..+...|++++|.++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555443
No 259
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=11 Score=30.92 Aligned_cols=125 Identities=13% Similarity=0.026 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
..+.+..-+.+.|..++|+++-.+-.+ -| .-..+.|+++.|.++-.+. -+..-|..|-++....++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~----rF----elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQ----RF----ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhh----hh----hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhccc
Confidence 345556666666666666655322211 11 1223456666665554432 245667778888888888
Q ss_pred cchHHHHHHHHHHcCCCc-------chHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 98 LELGEWIKTYIDKNKVKN-------DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
+..|.+.|..-.+.+--. +......|-.... .....|.-+-+|-..|+++++++++.+-
T Consensus 682 l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 682 LPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 888888777665432110 1111111111111 2233566666777789999988887665
No 260
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.90 E-value=2.9 Score=21.61 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=30.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
..+.|-..++..++++|.+.|+.-+...+..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34578888999999999999999999999888764
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=14 Score=28.60 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=67.7
Q ss_pred HHHhccCCHHHHHHHhcccCC------------------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHH
Q 038237 24 SGYINREQVDIARQCFDQMPE------------------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTI 85 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 85 (181)
+.+.|.|++..|..-|+.... .-..++..|.-.+.+.+++..|++.-+..+..+- +|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 457788888888887766431 1444688888999999999999999999887542 355444
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 86 VSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
-=--.++...|+++.|...|+.+++...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 4445678888999999999999998743
No 262
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.89 E-value=9.4 Score=26.60 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=22.9
Q ss_pred cCcHHHHHHHHHHHHH---cCCCccHHHHHHHHHHHHccCCcchH
Q 038237 60 VNRFREALTLFQEIQT---SNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 60 ~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
..+.+++++++....+ .+-.+|+..+.+|.+.+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455666666555543 22245555666666666666655544
No 263
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.80 E-value=18 Score=29.57 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=80.4
Q ss_pred HHHHHHHhcccCC--C--cHHHHHHHHHHHHhcCcHHHHHHHHH--------HHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 32 VDIARQCFDQMPE--R--DYVLWTTMIDGYLRVNRFREALTLFQ--------EIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 32 ~~~a~~~~~~m~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
..++.+++...-. | ..+.--.++.-....|+++.|++++. ...+.+..|-.+ ..+..-+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCc
Confidence 4445554444432 1 23344455556667788888888777 555555445443 34555666666666
Q ss_pred hHHHHHHHHHHc--CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 100 LGEWIKTYIDKN--KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 100 ~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
.|..++..-.+. ...+......+++ .-....--+.|+-++|..+++++.+. .++|..+..-++.+
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~------------~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLM------------REAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTA 501 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHH------------HHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHH
Confidence 677776666542 1122222222222 22333334689999999999999986 46788888888888
Q ss_pred hcc
Q 038237 178 RTH 180 (181)
Q Consensus 178 ~~~ 180 (181)
|++
T Consensus 502 ~~~ 504 (652)
T KOG2376|consen 502 YAR 504 (652)
T ss_pred HHh
Confidence 774
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.78 E-value=12 Score=27.69 Aligned_cols=84 Identities=8% Similarity=0.011 Sum_probs=45.4
Q ss_pred HHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 25 GYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
.....|+..+|..+|+.... .+...--.+...|...|+++.|..++..++..--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34456666666666666553 244555566667777777777777777766543222222222334444444444444
Q ss_pred HHHHHHH
Q 038237 102 EWIKTYI 108 (181)
Q Consensus 102 ~~~~~~~ 108 (181)
..+-+..
T Consensus 223 ~~l~~~~ 229 (304)
T COG3118 223 QDLQRRL 229 (304)
T ss_pred HHHHHHH
Confidence 4444333
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=3.8 Score=34.07 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
+.+--+.-+...|+-.+|.++-.+.+-||-..|-.-+.+++..++|++..++=..++ ++.-|.....+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 344455666677888888888888888888888777888888888777555443332 23445557788888888
Q ss_pred cchHHHHHHHHH
Q 038237 98 LELGEWIKTYID 109 (181)
Q Consensus 98 ~~~a~~~~~~~~ 109 (181)
.++|...+.++.
T Consensus 760 ~~EA~KYiprv~ 771 (829)
T KOG2280|consen 760 KDEAKKYIPRVG 771 (829)
T ss_pred HHHHhhhhhccC
Confidence 888877766554
No 266
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.04 E-value=2.7 Score=19.39 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666777777777777777777655
No 267
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.95 E-value=2.4 Score=21.55 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+-.+|...|+.+.|.+++++....|-.|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~q 33 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEAQ 33 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHHH
Confidence 55678889999999999999997654443
No 268
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=8.6 Score=32.16 Aligned_cols=50 Identities=18% Similarity=0.042 Sum_probs=28.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHH
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (181)
.-+..-|+..+|.++-.+.+- ||...|-.=+.+++..++|++-+++-+..
T Consensus 692 ~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 334455566666555554443 56666666666666666665555544433
No 269
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=18 Score=29.08 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=41.6
Q ss_pred HHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHccCCcch
Q 038237 25 GYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE-FTIVSILTARANLGALEL 100 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 100 (181)
+.+..|+++.|...|.+... +|.+.|..=..+|++.|++++|++==.+-.+ +.|+= --|+-.-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 34455666666666665543 3555566666666666666665543333222 22332 233444444444555555
Q ss_pred HHHHHHHH
Q 038237 101 GEWIKTYI 108 (181)
Q Consensus 101 a~~~~~~~ 108 (181)
|..-|.+=
T Consensus 89 A~~ay~~G 96 (539)
T KOG0548|consen 89 AILAYSEG 96 (539)
T ss_pred HHHHHHHH
Confidence 55555443
No 270
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.97 E-value=3.2 Score=30.71 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
-|+..|....+.||+++|++++++-++.|+.--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 47788888899999999999999998888764444443
No 271
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=83.89 E-value=25 Score=29.66 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
.|..+|..+..++.+.|+++.+.+.|++... .....|..+-..|.-+|.-..|..++++-.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 3555666666666666666666666665543 244456666666666666666666665543
No 272
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=83.79 E-value=9.9 Score=24.93 Aligned_cols=63 Identities=3% Similarity=-0.029 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
++.+.+++.|++++..- ..+++.+.+.++...|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45566778888766543 4678888888888999999999999888877777666677777766
No 273
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=83.64 E-value=4.7 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=16.8
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcC
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVN 61 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 61 (181)
...+.+++.++++.++.++..+|.++.+++-..|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555555544444
No 274
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.45 E-value=15 Score=29.50 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=66.0
Q ss_pred ccHHHHhhhcC---CCChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHH-HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMK---NKDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYV-LWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+.|...|-.-. ++|.+.|+.-..+|.+.|++++|.+==.+-.+ |++. .|+..-.++.-.|++++|+.-|.+=++
T Consensus 19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 45666666543 36888899999999999999998876555543 5554 688888888889999999999998776
Q ss_pred cCCCccHHHHHHHHHHH
Q 038237 76 SNIMGDEFTIVSILTAR 92 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~ 92 (181)
..- -|...++-+..+.
T Consensus 99 ~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 99 KDP-SNKQLKTGLAQAY 114 (539)
T ss_pred cCC-chHHHHHhHHHhh
Confidence 432 2445555555554
No 275
>PRK09687 putative lyase; Provisional
Probab=83.28 E-value=16 Score=26.91 Aligned_cols=125 Identities=9% Similarity=-0.125 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC-cchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA-LELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
+..+--..+.++.+.++ .++...+-.+.+. +|..+-...+.++++.+. -+.+...+..+. ..++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHH
Confidence 33444444445544444 3344444444432 344444445555554421 222333333332 223444445555
Q ss_pred HHhHhcCchH-------------hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 125 DMYCKCTVKF-------------TWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 125 ~~~~~~~~~~-------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
.++++.++.. ..-..+.+++..|.. +|+..+.++.+. .||...-...+.+|.+
T Consensus 214 ~aLg~~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKDKRVLSVLIKELKKGTVGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCChhHHHHHHHHHcCCchHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 5555444222 233456666777775 577777777753 3577777777777654
No 276
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.24 E-value=13 Score=26.52 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (181)
+..++.+.+.+++.+++...++=.+ | |...-..++.-++-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344455555555555555444332 2 4444555555555566666555554443
No 277
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=82.95 E-value=15 Score=26.52 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=45.1
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+..+|+-..+|.+.....++..+.+ +++++|.+.+.++++.|..|... .+++++.+-.
T Consensus 226 n~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~ 284 (333)
T KOG0991|consen 226 NQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVVKN 284 (333)
T ss_pred chhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHh
Confidence 34667777777888888888887655 58999999999999999987653 3556666544
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.59 E-value=1.5 Score=20.75 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=16.8
Q ss_pred chHhHHHHHHHHHHcCChhHHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~ 153 (181)
|...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566777777777799999885
No 279
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.35 E-value=21 Score=29.74 Aligned_cols=102 Identities=8% Similarity=0.050 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHH-HHHH
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFA-GNAL 123 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 123 (181)
.+..+...+-.-+-+...+.-|-++|..|-.. ..++......++|++|+.+-+...+. .||++. |.-.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 34444444444444555566666666665442 23556666777788877776655432 333321 1111
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
+ + ...-|.-.-.+|.++|+-.+|.++++++....
T Consensus 814 L---A---E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 814 L---A---ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred h---h---hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 1 1 11223344567888999999999999997653
No 280
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.02 E-value=5.4 Score=20.62 Aligned_cols=29 Identities=3% Similarity=-0.036 Sum_probs=14.4
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
|-.+++..+++.|.+.|+..+...+..++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44445555555555555554444444444
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.98 E-value=19 Score=26.90 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHhccCCHHHHHHHhcccCCC--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---C-ccHHHHHHHHHHHHcc
Q 038237 22 IVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI---M-GDEFTIVSILTARANL 95 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~-p~~~~~~~l~~~~~~~ 95 (181)
...+..+.|+++...+........ +...+.++... +.++++++....+.....-. . .....|........+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 346677788888877777766653 34444444433 66777777777766543211 0 1112222222222222
Q ss_pred C---CcchHHH--------------HHHHHHHc--CCCcchHHHHHHHHHh----H----hcCchHhHHHHHHHHHHcCC
Q 038237 96 G---ALELGEW--------------IKTYIDKN--KVKNDIFAGNALIDMY----C----KCTVKFTWTTMIVGLAISGN 148 (181)
Q Consensus 96 ~---~~~~a~~--------------~~~~~~~~--~~~~~~~~~~~ll~~~----~----~~~~~~~~~~li~~~~~~~~ 148 (181)
. .++++.. +++....+ ...++..+|..++..- . ......+|..+...+-+.|+
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~ 161 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGN 161 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCC
Confidence 1 1222222 22222221 3456677777666532 1 22266789999999999999
Q ss_pred hhHHHHHHHHHHHcC
Q 038237 149 GDKALDMFSQMLRAS 163 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~ 163 (181)
++.|...+.++...+
T Consensus 162 ~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 162 FQLALSALNRLFQLN 176 (352)
T ss_pred cHHHHHHHHHHhccC
Confidence 999999999998754
No 282
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.96 E-value=3.7 Score=18.71 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566677788899999999999998763
No 283
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.85 E-value=1.7 Score=19.69 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+-.++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666799999999999999875
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.42 E-value=26 Score=29.56 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=10.6
Q ss_pred CCHHHHHHHhcccCCCc
Q 038237 30 EQVDIARQCFDQMPERD 46 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~~~ 46 (181)
|++++|++++-+|.++|
T Consensus 748 g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cchhHhhhhhhccchhh
Confidence 56666666666666543
No 285
>PRK14700 recombination factor protein RarA; Provisional
Probab=81.19 E-value=20 Score=26.68 Aligned_cols=95 Identities=4% Similarity=-0.022 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCCcchHHH
Q 038237 49 LWTTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVKNDIFAG 120 (181)
Q Consensus 49 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~ 120 (181)
.+-.+|+++.|+ .|.+.|+-.+.+|.+.|-.|....--.++-+.-..|..+ .|...++....-|.+-.....
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~L 204 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVL 204 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 344457888775 689999999999999999999988888888888888543 455666666677765433333
Q ss_pred HHHHHHhHhcC-chHhHHHHHHHH
Q 038237 121 NALIDMYCKCT-VKFTWTTMIVGL 143 (181)
Q Consensus 121 ~~ll~~~~~~~-~~~~~~~li~~~ 143 (181)
.-.+--++..+ +..+|.++-.+.
T Consensus 205 a~aviyLA~aPKSNs~y~A~~~A~ 228 (300)
T PRK14700 205 AQAAIYLAVAPKSNACYKALAQAQ 228 (300)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHH
Confidence 32222233322 555555554443
No 286
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.17 E-value=10 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=12.6
Q ss_pred HhccCCHHHHHHHhcccCCCcHHHHHHH
Q 038237 26 YINREQVDIARQCFDQMPERDYVLWTTM 53 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~l 53 (181)
+...|++++|..+.+....||...|-+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~AL 76 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLAL 76 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHH
Confidence 3344444444444444444444444443
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.10 E-value=4.1 Score=18.65 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788889999999999998765
No 288
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.65 E-value=2.1 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=22.2
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
.|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35557788888999888888875 45565543
No 289
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.47 E-value=14 Score=31.52 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=51.5
Q ss_pred HhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHH
Q 038237 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
+-+.|++++|..-+-+-..- .--..+|.-|..+.+...-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF--LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc--CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH
Confidence 44667777776655544321 01123455666666777777777888888875 5556678888888888877666555
Q ss_pred HHHH
Q 038237 106 TYID 109 (181)
Q Consensus 106 ~~~~ 109 (181)
+..-
T Consensus 455 ~~~~ 458 (933)
T KOG2114|consen 455 SKCD 458 (933)
T ss_pred hcCC
Confidence 4444
No 290
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.32 E-value=3.1 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
-.+|.++.+.|++++|.+.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35688888899999999999998763
No 291
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.25 E-value=13 Score=25.54 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 038237 139 MIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
++..+...|+.++|.++.+++..
T Consensus 150 ~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 150 YALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334448888888888888765
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.99 E-value=14 Score=26.30 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC--CCcchHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--VKNDIFAGNALI 124 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll 124 (181)
|.+.-++.+.+.++..+++....+-.+.+ +.|..+-..++.-++-.|++++|..-++-.-+.. ..+-..+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 34556778888999999999888776654 2366777789999999999999988777665542 233344444444
No 293
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.94 E-value=5.9 Score=32.74 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH-----------HH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE-----------FT 84 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~ 84 (181)
..+.-.+-..+-+...+.-|-++|..|-. -.+++..+...++|.+|+.+-+..++. .||. .-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDR 819 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhh
Confidence 33344444444555566666666666643 346777888889999999998887663 2333 22
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
+.-.-.+|.+.|+-.+|..+++++....+
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 44566788889999999999988876543
No 294
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=79.69 E-value=40 Score=29.21 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=71.7
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC-CcHHHHHHHHHHHHhcCcHHHHHHHHHHH-------
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEI------- 73 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m------- 73 (181)
++|+.+|++.+. |..+-..|-..|.+++|.++-+.=.+ .=-.||-.-..-+-..++.+.|++.|++-
T Consensus 817 EeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 817 EEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 455555555432 33344555566777777766443222 11123333333344456677777766542
Q ss_pred ---HHcCC---------CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH-------------
Q 038237 74 ---QTSNI---------MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC------------- 128 (181)
Q Consensus 74 ---~~~~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------------- 128 (181)
..... +.|...|.-.-.-.-..|+++.|..++...++ |-+++...|
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHH
Confidence 11110 11222222222222334555555555554432 122222222
Q ss_pred hcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 129 KCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 129 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.+||....-.+-+.|-..|++.+|...|-+.+
T Consensus 963 esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22366777777778888888888888887664
No 295
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=79.50 E-value=18 Score=25.17 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
|++.---.|-.+..+.|+..+|...|++-..--.--|....-.+..+....+++-.+...++.+.+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 45555567888999999999999999998876666788888888899999999999999999998764
No 296
>PRK09687 putative lyase; Provisional
Probab=78.79 E-value=24 Score=26.02 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=56.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHcCCCccH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRF----REALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~ 82 (181)
+++.+..+|..+.-..+.++.+.|..+-...+..-...+|...-...+.++.+-|+. .++..++..+... .|+.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 334444577777777888888887655555555544566777777777777777763 4567777666332 2566
Q ss_pred HHHHHHHHHHHccC
Q 038237 83 FTIVSILTARANLG 96 (181)
Q Consensus 83 ~~~~~l~~~~~~~~ 96 (181)
.+-...+.+++..+
T Consensus 106 ~VR~~A~~aLG~~~ 119 (280)
T PRK09687 106 CVRASAINATGHRC 119 (280)
T ss_pred HHHHHHHHHHhccc
Confidence 66666666666554
No 297
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=78.77 E-value=10 Score=21.82 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 13 NKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+||..+-...+.++++.++.+-...+.+.+..+|+.+-...+.++.+-|. +++...+.++.
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l 71 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLL 71 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Confidence 45555555666666666555544444444445555555555555555553 33444444433
No 298
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=78.49 E-value=16 Score=23.87 Aligned_cols=91 Identities=12% Similarity=-0.073 Sum_probs=63.8
Q ss_pred HHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCCccHH--HHHHHHHHHHccCC
Q 038237 24 SGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDEF--TIVSILTARANLGA 97 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~--~~~~l~~~~~~~~~ 97 (181)
.+++..|+.+.|++.|.+... .....||.=..++--.|+.++|++=+++..+ .|-+..+- .|.---..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 356788999999999988764 4788899999999999999999988888765 33221111 12222233456678
Q ss_pred cchHHHHHHHHHHcCCC
Q 038237 98 LELGEWIKTYIDKNKVK 114 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~ 114 (181)
-+.|..=|+..-+.|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88888877777666543
No 299
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.31 E-value=8.2 Score=31.48 Aligned_cols=142 Identities=9% Similarity=-0.033 Sum_probs=40.0
Q ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 32 VDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 32 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.....+++...+-++...-.-++..|.+.|..+.+.++.+.+-..-+ ...-|+..+.-+.++|+.+.+..+-..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444444444445666677888889999988888888888765533 3567889999999999998877776666644
Q ss_pred ----CCCcchHHHHHHHHHhHhcC---chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 112 ----KVKNDIFAGNALIDMYCKCT---VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 112 ----~~~~~~~~~~~ll~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
|...+....+.+...-...+ -...|--+... -+.|++.+|.+.+-.+...++-|...-...|.+
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~-~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYEL-YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 33333333332222211111 11112222222 235788888888888887777776655544443
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.30 E-value=33 Score=27.51 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=65.6
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+... ...|+..+......+... ..|++..|..++++....+ ....++..+...++- .+......++.+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~-~~~~~~~~l~~s 257 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGY-HGIEFLTSFIKS 257 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3444444444 346777666665544433 4588999999998876542 122445555444422 255566667777
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
....+....|+.++++|.+.|..|.....
T Consensus 258 i~~~d~~~~al~~l~~l~~~G~d~~~~~~ 286 (484)
T PRK14956 258 LIDPDNHSKSLEILESLYQEGQDIYKFLW 286 (484)
T ss_pred HHcCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 66555667999999999999998876543
No 301
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=78.29 E-value=27 Score=26.40 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=56.3
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC--CcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISG 147 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~ 147 (181)
-.+..+.|++.+......++.... |+...+..-++.+.-... ..+......++.-+.. ...| -+++ ....|
T Consensus 150 ~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~---~~~f-~l~d-ail~g 222 (334)
T COG1466 150 KKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAE---FNIF-DLAD-ALLKG 222 (334)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhcccc---CCHH-HHHH-HHHCC
Confidence 344567788888887777777766 666666666666654322 2333333333332222 1111 1222 33489
Q ss_pred ChhHHHHHHHHHHHcCCCCChh
Q 038237 148 NGDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~p~~~ 169 (181)
+..+|..+++++..+|.+|=..
T Consensus 223 ~~~~a~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 223 DVKKALRLLRDLLLEGEEPLKL 244 (334)
T ss_pred CHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999999999999877443
No 302
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=77.66 E-value=10 Score=21.15 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=38.6
Q ss_pred cCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 42 MPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 42 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
+..+..+.++-++..+++..-.++++..+.+..+.|. .+..+|-.-++.+++
T Consensus 3 ~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp TEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3446677788888888888889999999999988886 356666666666655
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.46 E-value=18 Score=23.97 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=10.5
Q ss_pred HhcCcHHHHHHHHHHHHHc
Q 038237 58 LRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~ 76 (181)
...|+|++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 4455555555555555554
No 304
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.44 E-value=26 Score=25.89 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=58.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
.=|.+++..++|.+++...-+--+ +.++|.+ ....|-.|.|.+.+..+.++-..-.+..-.-+...|..+...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 457788899999998887655433 3355544 344555677888888888888877765333344457777777643
Q ss_pred cCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 130 CTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 130 ~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
+.+.=.|.+++|+++.
T Consensus 166 -----------~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 -----------HVLLPLGHFSEAEELV 181 (309)
T ss_pred -----------HHHhccccHHHHHHHH
Confidence 3333456666665554
No 305
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.22 E-value=11 Score=22.44 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=17.9
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
..|+.+.|.+++.++. .| | ..|...+.++...|.-+.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhh
Confidence 3455555666665555 32 2 233445555555544333
No 306
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.04 E-value=17 Score=24.94 Aligned_cols=53 Identities=11% Similarity=-0.165 Sum_probs=39.8
Q ss_pred hcCcHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 59 RVNRFREALTLFQEIQT-SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 59 ~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
...+.+......+...+ ....|+..+|..++.++...|+.++|.++.+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555544444444433 235699999999999999999999999999988765
No 307
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.02 E-value=33 Score=26.78 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHH---cCC-CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--chHhH
Q 038237 63 FREALTLFQEIQT---SNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--VKFTW 136 (181)
Q Consensus 63 ~~~a~~~~~~m~~---~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~ 136 (181)
.++...++..... .|+ ..+......++..+ .|+...+..+++.....+...+......++....... +...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 4566666666543 243 45555555555543 6888888888887765433333333333333211111 11223
Q ss_pred HHHHHHHH---HcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 137 TTMIVGLA---ISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 137 ~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
--++.++. +..+++.|+.++.+|.+.|..|..+.-..++.
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444 46899999999999999999887655444443
No 308
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.78 E-value=22 Score=24.55 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHHcCCCccH--H-----HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchH
Q 038237 62 RFREALTLFQEIQTSNIMGDE--F-----TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (181)
.++.|+.+|+.+.+.--.|.. . .-...+-.|.+.|.+++|.++++..... |+......-+....+..|
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd-- 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD-- 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc--
Confidence 468888899888775433321 1 1234567899999999999999999873 444454555555555442
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.|..++..++-..-.++...+++...
T Consensus 159 ~~h~~lqnFSy~~~~~ki~~~ve~~~ 184 (200)
T cd00280 159 PAHPVLQNFSYSHFMQKMKSYVELVL 184 (200)
T ss_pred cccHHHHhccHHHHHHHHHHHHHHHh
Confidence 23334444333323333344444433
No 309
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.76 E-value=5.6 Score=21.83 Aligned_cols=45 Identities=20% Similarity=0.424 Sum_probs=30.3
Q ss_pred CHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 31 QVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 31 ~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.++...++++.++. .|..-.-.+|.|+...|++++|.+.++++..
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555553 3444445688999999999999999888765
No 310
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.65 E-value=50 Score=28.68 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE 44 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 44 (181)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488999999999999999999999875
No 311
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=76.44 E-value=19 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=29.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHHccCCcch
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
+|+.+|..+|++-.+.++++.+-. .|-+.-...||..++...+.|.++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l 83 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL 83 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH
Confidence 667777777777777777666543 2333344556666666666666543
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.12 E-value=23 Score=24.40 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=76.6
Q ss_pred ccHHHHhhhcCCCChhHHHHH-----HHHHhccCCHHHHHHHhcccCCC--cHHHH---HHHHH--HHHhcCcHHHHHHH
Q 038237 2 GFTLEIFGTMKNKDVISYTAI-----VSGYINREQVDIARQCFDQMPER--DYVLW---TTMID--GYLRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~li~--~~~~~~~~~~a~~~ 69 (181)
|+|+.-|.....-+-..|-.| -....+.|+...|..-|++.-.. .+... ..|=. .+...|.++++..-
T Consensus 75 d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~sr 154 (221)
T COG4649 75 DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSR 154 (221)
T ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHH
Confidence 345555555554333334433 23467899999999999999752 12111 12222 34557889999888
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
.+.+...+-+.-...-..|--+-.+.|++.+|.+.|..+......|
T Consensus 155 vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 155 VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 8888777655555666677778889999999999999998764444
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.91 E-value=48 Score=28.48 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=73.7
Q ss_pred HHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 21 AIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGY----LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
.-++.+.+...++-|..+-+.-. .+..+...+...| .+.|++++|...|-+-... +.|. .++.-|....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 34555556666666666644332 3444444444443 4568899998888765432 2232 2456666666
Q ss_pred CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHH
Q 038237 97 ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLA 144 (181)
Q Consensus 97 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~ 144 (181)
++..--..++.+.+.|.. +...-+.|+..|.+.+|+.-.+.+|+.+-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 666667777888888776 55566888999998887777777777665
No 314
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.36 E-value=42 Score=27.16 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHH
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA 152 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a 152 (181)
+.+.|+..+......++... .|++..+..++++....|- ...+...+-..++. .+....-.++.++. .|+.+.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~lg~-~~~~~i~~ll~al~-~~d~~~~ 264 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTMLGT-IEPLLLFDILEALA-AKAGDRL 264 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHHCC-CCHHHHHHHHHHHH-cCCHHHH
Confidence 44577777776666555553 5888899999988776541 22333333333322 24444555666666 5899999
Q ss_pred HHHHHHHHHcCCCCChhh
Q 038237 153 LDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 153 ~~~~~~m~~~~~~p~~~t 170 (181)
++++++|...|..|....
T Consensus 265 l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 265 LGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 999999999999886443
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=75.30 E-value=39 Score=27.42 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch-------HHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI-------FAG 120 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 120 (181)
....++.-|.+.+++++|..++..|.=... .-.-.+.+.+.+.+.+..--++-+..++...-.=..|.. .-|
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 345677889999999999999888853211 012345556666677776666677777776654333322 234
Q ss_pred HHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 121 ~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.--+..|++ -+++.+.|.+++++|.-+--++-
T Consensus 490 ~d~V~~~aR--------RfFhhLLR~~rfekAFlLAvdi~ 521 (545)
T PF11768_consen 490 RDPVSDLAR--------RFFHHLLRYQRFEKAFLLAVDIG 521 (545)
T ss_pred HHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHhcc
Confidence 445555555 57777788888888877665554
No 316
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=36 Score=26.40 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=69.7
Q ss_pred HHHhcCcHHHHHHHHHHHHHc-----CC---------CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHH
Q 038237 56 GYLRVNRFREALTLFQEIQTS-----NI---------MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~-----~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
.|.+.|++..|...|++.... +. ..-..++..+.-.+.+.+++..|...-......+.. ++-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K--- 292 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK--- 292 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh---
Confidence 677788999998888774321 11 122345777888888999999888888777765433 221
Q ss_pred HHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 122 ~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
++-| =-.++...|+++.|...|+++.+ +.|+-.....=|..|
T Consensus 293 ----ALyR---------rG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 293 ----ALYR---------RGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred ----HHHH---------HHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 1111 13455668999999999999987 577766665555444
No 317
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=75.16 E-value=11 Score=22.54 Aligned_cols=27 Identities=7% Similarity=0.212 Sum_probs=12.0
Q ss_pred CHHHHHHHhcccCCCcHHHHHHHHHHH
Q 038237 31 QVDIARQCFDQMPERDYVLWTTMIDGY 57 (181)
Q Consensus 31 ~~~~a~~~~~~m~~~~~~~~~~li~~~ 57 (181)
+.+++.++++.++..+..+|..+..++
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 334444444444444444444444444
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.93 E-value=5.6 Score=16.87 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.|..+-..+...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 566777788889999999999988875
No 319
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=74.90 E-value=25 Score=24.32 Aligned_cols=60 Identities=15% Similarity=-0.009 Sum_probs=43.5
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 54 IDGYLRVNRFREALTLFQEIQTSNI--MGDEFTIVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
-..+...|++++|.+.|+++...-- +--....-.+..++.+.|+++.|...++.+++.-.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3456778999999999999986421 11224455778899999999999999999988633
No 320
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=74.69 E-value=17 Score=22.29 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=11.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHH
Q 038237 52 TMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m 73 (181)
.++..|...++.++|.+.+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 321
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.88 E-value=51 Score=26.96 Aligned_cols=108 Identities=9% Similarity=0.016 Sum_probs=62.7
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCCc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERD-YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
+....+..++..+ +.-+.+.-.++++++.. . ...+..++++....|-.....-+.+.+....+.+ ...-..+..+.
T Consensus 308 ~~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~ 384 (574)
T smart00638 308 PAAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLP 384 (574)
T ss_pred chHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH
Confidence 4444566666654 34555666667676655 3 6788899999999998777777777777666643 22222333333
Q ss_pred H--ccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 93 A--NLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 93 ~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
. +....+....+++-+......+....+.+.+
T Consensus 385 ~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~ 418 (574)
T smart00638 385 HTARYPTEEILKALFELAESPEVQKQPYLRESAL 418 (574)
T ss_pred HhhhcCCHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 2 3344444444444444445555555444433
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.82 E-value=15 Score=29.40 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=63.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (181)
|+.....+ ..+...|+++.+.+.+..... .+..+-..++....+.|++++|...-+.|....+. +........-
T Consensus 323 p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~ 399 (831)
T PRK15180 323 PVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAG 399 (831)
T ss_pred chhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhheeeecc
Confidence 45443333 335567888888888777664 46677888888888888999999988888877664 4433333333
Q ss_pred HHHccCCcchHHHHHHHHHHc
Q 038237 91 ARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~ 111 (181)
..-..|-++++...++++...
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhcc
Confidence 334456667776666666543
No 323
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=72.21 E-value=61 Score=27.58 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=25.0
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccC
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP 43 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 43 (181)
++|.++.+. +|-+..|..+.....+.-.++.|+.-|-...
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 344444444 3666778877777777777777766665544
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.50 E-value=27 Score=23.19 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=69.0
Q ss_pred HhcCcHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhH
Q 038237 58 LRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTW 136 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 136 (181)
...++.+++..+++.|.--. -.|...++- ...+.+.|++++|..+|+.+...+..+ .-...|+..|.....-..|
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~--p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAP--PYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCc--hHHHHHHHHHHHhcCChHH
Confidence 34788999999999887632 112233333 334568899999999999999875332 2333444444444445567
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..--......|...++..+.+.+...
T Consensus 97 r~~A~~~le~~~~~~a~~Lv~al~g~ 122 (153)
T TIGR02561 97 HVHADEVLARDADADAVALVRALLGA 122 (153)
T ss_pred HHHHHHHHHhCCCHhHHHHHHHHhcc
Confidence 77777777888999999999998743
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.15 E-value=33 Score=25.66 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI 108 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (181)
++..-..|..+|.+.+|.++-.+..+.. +.+...+-.++..+...||--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344455666666666666666655532 134455556666666666655555555444
No 326
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=70.86 E-value=49 Score=25.95 Aligned_cols=30 Identities=27% Similarity=0.097 Sum_probs=19.6
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcch
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDI 117 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (181)
..+++.+.|+..++-.+++.+=+....|+.
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 345566677777777777777766555543
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=70.85 E-value=65 Score=27.33 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=64.7
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+... .+.|+..+......+++.. .|++..+..++++....|. ...+...+-...+.. +......++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~~-d~~~If~LldA 255 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGAV-DKQYLYELLTG 255 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHccc-CHHHHHHHHHH
Confidence 4444555444 4567877777776666655 5889999999988776541 122333333333332 33455666677
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
+. .++...+++++++|...|+.+..
T Consensus 256 L~-~~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 256 II-NQDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCHHH
Confidence 66 58999999999999999886653
No 328
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.54 E-value=54 Score=26.29 Aligned_cols=67 Identities=9% Similarity=0.079 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc------hHHHHHHHHHHcCCCcch
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE------LGEWIKTYIDKNKVKNDI 117 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 117 (181)
...++++ .+.+++++|+.++.+|...|..|....-..+..+.-..|..+ .+...++...+-|.+-..
T Consensus 247 i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~ 319 (472)
T PRK14962 247 VRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEK 319 (472)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchH
Confidence 3344444 345899999999999999999888876666666665555443 334444444555655433
No 329
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.04 E-value=58 Score=26.05 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
..++.-|.-.|++.+|.+..+++--| ..+.+.+++-+.-+.|+-+..+.++++....|+ .|-+-+-++|.|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhh
Confidence 45566666677777777777766654 445666777776666666666666666666542 2334445555543
No 330
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=68.60 E-value=11 Score=21.38 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=24.8
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
...++.+++.+++++....|+.|.......+..+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 334677777777777777777777666666666654433
No 331
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=67.93 E-value=65 Score=26.19 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHH
Q 038237 63 FREALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIV 141 (181)
Q Consensus 63 ~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~ 141 (181)
.++....++... ++|+..+...+..+. ....|.+.++..+++++...|- +..+........+...+... -.++.
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~-~~~~~ 254 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKL-LSLLE 254 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHH-HHHHH
Confidence 455666666654 577877776665444 4457888999999999998764 44555555555544332222 22333
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 142 GLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
+.. .++...++..++++.+.|..|....-
T Consensus 255 ~i~-~~d~~~~~~~~~~l~~~G~~~~~~l~ 283 (515)
T COG2812 255 AIL-KGDAKEALRLINELIEEGKDPEAFLE 283 (515)
T ss_pred HHH-ccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 333 78999999999999999988866543
No 332
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=67.92 E-value=23 Score=20.98 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=15.0
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLR 59 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 59 (181)
+..+.++|.++++..+.++..+|.++.+++-.
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 33444444444444444444455444444443
No 333
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.86 E-value=56 Score=27.59 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC------CcHHHHHHHHHHHHhcCcHH--HHHHHHHHH-HHcCCCccHHHHHHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE------RDYVLWTTMIDGYLRVNRFR--EALTLFQEI-QTSNIMGDEFTIVSILT 90 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~--~a~~~~~~m-~~~~~~p~~~~~~~l~~ 90 (181)
.+++.+|..+|++..+.++++.... .-...||.-|....+.|.++ +..+-..+. .+..+--|..||..++.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 3899999999999999999887763 24567899999999999754 233322222 23446678888888877
Q ss_pred HHHccCCcchHHHHHHHHHH
Q 038237 91 ARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~ 110 (181)
+-...-.-....-++.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 76653333344455555544
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.83 E-value=39 Score=23.64 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc---CCCcchHHHHHHHHHhHh
Q 038237 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~ 129 (181)
++|.+.|-.+...+..-++...-.|..-|. ..+.+++..++...... +-.+|+..+.+|.+.|-+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 667777777777765545555555555555 45677777777766653 335666666666666655
No 335
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.99 E-value=42 Score=25.62 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHhccCCHHHHHHHhcccCC-------CcHHHHH--HHHHHHHhcCcHHHHHHHHHHHHH-----cCCCccHHH
Q 038237 23 VSGYINREQVDIARQCFDQMPE-------RDYVLWT--TMIDGYLRVNRFREALTLFQEIQT-----SNIMGDEFT 84 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 84 (181)
+...-+.++.++|.+..+++.+ |+.+.|- .+...+...|+..++.+++++.++ -+++|+.++
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3444455678888888887763 5666554 344556677899999999888877 678876644
No 336
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=66.65 E-value=37 Score=22.95 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=62.3
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 12 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
..|+...|..+++.+.+.|+.....++++-=.-+|.......+-.+.. ....+.++=-+|.++ -...+..+++.
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR----L~~~~~~iiev 98 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR----LGTAYEEIIEV 98 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH----hhhhHHHHHHH
Confidence 347888999999999999999988888876665666666555544333 234455555555442 11134556778
Q ss_pred HHccCCcchHHHHHHHHH
Q 038237 92 RANLGALELGEWIKTYID 109 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~ 109 (181)
+...|++-+|....+...
T Consensus 99 LL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 99 LLSKGQVLEALRYARQYH 116 (167)
T ss_pred HHhCCCHHHHHHHHHHcC
Confidence 888888888888777653
No 337
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=66.56 E-value=52 Score=24.59 Aligned_cols=93 Identities=13% Similarity=-0.002 Sum_probs=57.3
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc--C--CCcchHHHHHHHHHhHhcCchHhHHHHHHHHHH
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN--K--VKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI 145 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~ 145 (181)
-+++.+.|+..+......++.... ++...+..-++++.-. + ...+...-..++. .. +...|. ++++..
T Consensus 140 ~~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~---~~-~~~if~-l~dai~- 211 (326)
T PRK07452 140 ERTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVS---NT-TQNSLQ-LADALL- 211 (326)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc---cC-cCcHHH-HHHHHH-
Confidence 344566777777777777766654 3555555555655543 1 1222222222222 22 334555 777776
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhh
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
.|+..+|.++++.+...|..|-...
T Consensus 212 ~~~~~~A~~~l~~L~~~g~~p~~il 236 (326)
T PRK07452 212 QGNTGKALALLDDLLDANEPALRIV 236 (326)
T ss_pred CCCHHHHHHHHHHHHHCCCcHHHHH
Confidence 6999999999999999998776554
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.06 E-value=64 Score=26.85 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
...+.|+.+.|.++-.+. .+..-|..|-++..+++++..|.+.|..-.
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344567777776664432 345566777777777777777777666543
No 339
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.36 E-value=55 Score=24.44 Aligned_cols=111 Identities=11% Similarity=0.051 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCC-cHHHHH---HHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWT---TMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSIL 89 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 89 (181)
+...--.+..+|...|+++.|..+++.++.. ....+. .-|..+.+.....+...+-.+.-.. | |...-..+-
T Consensus 167 ~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA 243 (304)
T COG3118 167 NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALA 243 (304)
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3445667788999999999999999999863 112222 2344444554444444444444443 5 555566777
Q ss_pred HHHHccCCcchHHHHHHHHHHc--CCCcchHHHHHHHHHhHh
Q 038237 90 TARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~ 129 (181)
..+...|+.+.|.+.+=.+.+. |.. |...-..|++.+..
T Consensus 244 ~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~ 284 (304)
T COG3118 244 DQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA 284 (304)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence 8888899999988777666654 444 44455555555544
No 340
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=65.21 E-value=27 Score=20.76 Aligned_cols=44 Identities=11% Similarity=-0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
++|+-....|+..|...|.++++-..-.-.++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 88888888999999999999888887777777788888887654
No 341
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=64.93 E-value=58 Score=24.56 Aligned_cols=94 Identities=5% Similarity=-0.050 Sum_probs=50.5
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChh
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGD 150 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~ 150 (181)
+...+.|+..+......++..+. ++...+..-++++.-........|..-+-.......+ ...-.++++.. .|+..
T Consensus 153 ~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e-~~if~l~dai~-~~~~~ 228 (343)
T PRK06585 153 DELAEAGLRITPDARALLVALLG--GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASA-LSLDDAADAAL-AGDLA 228 (343)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCccc-ccHHHHHHHHH-CCCHH
Confidence 33455666666666666665543 4455555555555443111111222222222222211 22223455554 88999
Q ss_pred HHHHHHHHHHHcCCCCCh
Q 038237 151 KALDMFSQMLRASIKPDE 168 (181)
Q Consensus 151 ~a~~~~~~m~~~~~~p~~ 168 (181)
+|..+++.+...|..|-.
T Consensus 229 ~a~~~l~~ll~~g~~p~~ 246 (343)
T PRK06585 229 AFERALDRALAEGTAPVL 246 (343)
T ss_pred HHHHHHHHHHHcCCCHHH
Confidence 999999999999997743
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.90 E-value=40 Score=22.64 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=68.3
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchH
Q 038237 56 GYLRVNRFREALTLFQEIQTSNIMGDEFTIV-SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKF 134 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 134 (181)
.-.+.++.+++..++.-+.-. +|...... .--..+.+.|++.+|..+|+.+...+ |.......|+..|.....-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 345567999999999998763 35443322 12234568899999999999987663 44444556666665554555
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|-..-......+--..+..+.+.+...
T Consensus 95 ~Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 6666666555566667777777777654
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.89 E-value=30 Score=21.18 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHHHh
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLS 176 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~ 176 (181)
..+-++.+......|++.+..+-+.+|-+ .+++--|.++|+-.+.+ |. +...|-.+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRR----------------vND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRR----------------VNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 33444444445677888877777777766 77888888888877754 32 3445655554
No 344
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=64.14 E-value=31 Score=24.41 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=55.9
Q ss_pred CHHHHHHHhcccCCC-----------cHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 038237 31 QVDIARQCFDQMPER-----------DYVLWTTMIDGYLRVN---------RFREALTLFQEIQTSNIM-GDEFTIVSIL 89 (181)
Q Consensus 31 ~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~~~~~l~ 89 (181)
.++.|..++.+|--+ ...-|..+..+|++.| +.+...++++-.++.|++ .=++.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 367888888888642 5566888888888886 456666677777777754 2336777777
Q ss_pred HHHHccCCcchHHHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYID 109 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~ 109 (181)
+.-.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 76666667777777777654
No 345
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=63.70 E-value=94 Score=26.55 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHH--------cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC--C-----cchHHHHHHH----
Q 038237 64 REALTLFQEIQT--------SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV--K-----NDIFAGNALI---- 124 (181)
Q Consensus 64 ~~a~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~ll---- 124 (181)
++...++..... .++..+......+.... .|+...+..+++....... . .+.......+
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 555566665543 34556666666666654 7888889888887654211 1 1111111111
Q ss_pred HHhHhcCc--hHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 125 DMYCKCTV--KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 125 ~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
..|.+.|+ ....++++.. .+.++++.|+.++.+|.+.|..|..+.=..++-
T Consensus 249 ~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~ 301 (725)
T PRK13341 249 VLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIA 301 (725)
T ss_pred hhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12334343 2233333333 357899999999999999999887655444443
No 346
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=63.69 E-value=10 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=22.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
.|+.++|.++++.++.+|+.|-...|..
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 8999999999999999999998777653
No 347
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=63.62 E-value=43 Score=22.58 Aligned_cols=58 Identities=5% Similarity=-0.094 Sum_probs=36.4
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|--.-|..+.+.|
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 4556766555443 455555555666678888888887776666666555556666555
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.91 E-value=40 Score=25.27 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=53.2
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCCCccHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT-----SNIMGDEFTI 85 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 85 (181)
++..-..|..+|.+.+|.++-+.... -+...|-.|+..++..|+--++.+-++++.+ .|+..+-..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556778899999999999988875 3777899999999999998899988888753 4665554443
No 349
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=62.55 E-value=58 Score=23.72 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=74.9
Q ss_pred HHhccCCHHHHHHHhcccCCC------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCCccH--HHHHHHHHHHHcc
Q 038237 25 GYINREQVDIARQCFDQMPER------DYVLWTTMIDGYLRVNRFREALTLFQEIQT-SNIMGDE--FTIVSILTARANL 95 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~--~~~~~l~~~~~~~ 95 (181)
.-.+.|++++|.+.|+.+.+. ...+--.++.++.+.+++++|...+++..+ .+-.||. ..|-..+.-+...
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 345789999999999988752 334455667788888999999999988765 3444554 4444444433333
Q ss_pred C----CcchHHHHHHHH---HH----cCCCcchHHHHHHHH-HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 96 G----ALELGEWIKTYI---DK----NKVKNDIFAGNALID-MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 96 ~----~~~~a~~~~~~~---~~----~~~~~~~~~~~~ll~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
. |...+..-+..+ ++ +...||...--..+. .++. .=-.+-.-|.+.|.+.-|..-+++|.+.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~-----~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG-----HEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 2 222233333333 33 233344433222221 1111 1112334466777777777777777765
No 350
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=62.55 E-value=49 Score=22.91 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
++.|..+++.+.+.-..|. +.--.+.-..+ -..+..|.+.|.+++|.+++++..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~--~lhe~i~~lik-------~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPE--TLHEEIRKLIK-------EQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcH--HHHHHHHHHHH-------HHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 5678888888887644331 12222222222 34566788899999999999999875
No 351
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=62.42 E-value=34 Score=21.33 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 86 VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
..+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3556666666667777777777777776666665444455555544
No 352
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=61.91 E-value=1.1e+02 Score=26.66 Aligned_cols=99 Identities=9% Similarity=0.071 Sum_probs=58.1
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+.+. .+.|+..+...+..+++.. .|++..+...++++... ......++..+...+... +......++++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~-~~~~I~~lidA 257 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVT-DSALIDEAVDA 257 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3444444443 3457766666655554443 36777888888877642 223334444444444332 33334455566
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+. .++...++.+++++.+.|..|.
T Consensus 258 L~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 258 LA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 55 5778888989999888887654
No 353
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=73 Score=25.15 Aligned_cols=82 Identities=17% Similarity=0.035 Sum_probs=56.9
Q ss_pred cCCHHHHHHHhcccCCCcHHHHH---------------HHHHHHHhcCcHHHHHHHHHHHHH---cCCCccHHHHHHHHH
Q 038237 29 REQVDIARQCFDQMPERDYVLWT---------------TMIDGYLRVNRFREALTLFQEIQT---SNIMGDEFTIVSILT 90 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~~~~~~~~---------------~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~ 90 (181)
.++.+++...|++..+-++.... .=-.-..+.|++.+|.+.|.+-.. .+++|+...|...-.
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 45667777777777653222221 122234567899999999988764 457788888888888
Q ss_pred HHHccCCcchHHHHHHHHHH
Q 038237 91 ARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~ 110 (181)
...+.|+..+|..--+...+
T Consensus 296 v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hhcccCCchhhhhhhhhhhh
Confidence 89999999988876655544
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.29 E-value=1.1e+02 Score=26.35 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 135 TWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 135 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.--.|..-|...+++.+|+.++-..++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC
Confidence 334477888888999999888766653
No 355
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.84 E-value=76 Score=24.57 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=71.6
Q ss_pred CccHHHHhhhcCC-CChhHHH--------HHHHHHhccCCH--------HHHHHHhcccCCC-----------cHHHHHH
Q 038237 1 MGFTLEIFGTMKN-KDVISYT--------AIVSGYINREQV--------DIARQCFDQMPER-----------DYVLWTT 52 (181)
Q Consensus 1 ~~~a~~~~~~~~~-~~~~~~~--------~li~~~~~~~~~--------~~a~~~~~~m~~~-----------~~~~~~~ 52 (181)
+|+|+.+|..... |....-. -++-.+.-.|++ ..|.+.|+.|..| ......+
T Consensus 199 fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~ 278 (422)
T KOG2582|consen 199 FERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRT 278 (422)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHH
Confidence 3667777776553 4333222 233334445665 6677888888753 2223566
Q ss_pred HHHHH----HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----HccCCcchHHHHHHHHHHcC
Q 038237 53 MIDGY----LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR----ANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 53 li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~ 112 (181)
++..+ .+-++..-+......|.+.++..=+.||.++--.. .+.+..+++.+..-+|.+.|
T Consensus 279 lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 279 LVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 66544 44578888999999999988877777777664433 35567777777777777655
No 356
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.58 E-value=72 Score=24.15 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHc
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAIS 146 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~ 146 (181)
.++++.|.+.++.|.-..+.-+.-.+.+.-.++++..+++.+... ..-+..|+..||. --.++.--.-.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs------mlil~Re~il~ 331 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS------MLILVRERILE 331 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH------HHHHHHHHHHh
Confidence 457888889999999999888888888999999999999998753 3337777777765 11222233347
Q ss_pred CChhHHHHHHHH
Q 038237 147 GNGDKALDMFSQ 158 (181)
Q Consensus 147 ~~~~~a~~~~~~ 158 (181)
|++...+++++.
T Consensus 332 ~DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 332 GDFTVNMKLLQN 343 (370)
T ss_pred cchHHHHHHHhc
Confidence 788877777764
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.41 E-value=38 Score=20.93 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=7.9
Q ss_pred HHhcCcHHHHHHHHHHH
Q 038237 57 YLRVNRFREALTLFQEI 73 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m 73 (181)
+.+.|++++|..+.+.+
T Consensus 49 LmNrG~Yq~Al~l~~~~ 65 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL 65 (115)
T ss_pred HHccchHHHHHHhcCCC
Confidence 33444555555444443
No 358
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=60.10 E-value=9.9 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCh
Q 038237 146 SGNGDKALDMFSQMLRAS-IKPDE 168 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~-~~p~~ 168 (181)
.=+++.|+..|.+++..| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 558899999999999875 66654
No 359
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=59.97 E-value=27 Score=19.14 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=24.7
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH-----ccCCcchHHHH
Q 038237 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA-----NLGALELGEWI 104 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~~~~~~a~~~ 104 (181)
+.+.|++=+|-+++++.....-.|....+-.+|.... +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456677777777777765433334444444444432 34555555443
No 360
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=59.92 E-value=29 Score=20.50 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=15.9
Q ss_pred HhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q 038237 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLR 59 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 59 (181)
.++..+.+.|..+++.++ .++.+|.+++.++-.
T Consensus 40 ~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~ 72 (84)
T cd08810 40 SCRTTSRKQAGKLLDILA-ENPKGLDALIESIRR 72 (84)
T ss_pred hccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHH
Confidence 334444455555555444 555555554444433
No 361
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=59.73 E-value=39 Score=20.80 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=26.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 53 MIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
++..+...+..-.|.++++.+.+.+..++..|.--.++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444455556666666666655555555555555555555543
No 362
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=59.58 E-value=1.2e+02 Score=27.38 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=48.5
Q ss_pred HHHHHHHHhccC--CHHHHHHHhcccC---------CCcHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHH
Q 038237 19 YTAIVSGYINRE--QVDIARQCFDQMP---------ERDYVLWTTMIDGYLR----VNRFREALTLFQEIQTSNIMGDEF 83 (181)
Q Consensus 19 ~~~li~~~~~~~--~~~~a~~~~~~m~---------~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 83 (181)
|...+..+++.| .++++..+.++=. +++...+..+..+|+. ..++++|--.|+..-+.
T Consensus 896 y~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------- 968 (1265)
T KOG1920|consen 896 YEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL------- 968 (1265)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------
Confidence 556666666666 4555555544332 2566666555544443 46677777766654321
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHH
Q 038237 84 TIVSILTARANLGALELGEWIKTYID 109 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (181)
...+.++..+|+|.+|..+..++.
T Consensus 969 --ekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 969 --EKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred --HHHHHHHHHhccHHHHHHHHHhhc
Confidence 235677777777777777766554
No 363
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=58.69 E-value=98 Score=25.14 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC-CcchHHHHHHHHHhHhcCchHhHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCKCTVKFTWTTMIV 141 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~li~ 141 (181)
++..+.+... .+.|+..+......+... ..|++..+...+++....+- .....+...+-...+.. +....-.++.
T Consensus 190 ~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~-~~~~if~L~~ 266 (507)
T PRK06645 190 EEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLV-DSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCC-CHHHHHHHHH
Confidence 4444444443 456776666665555553 35788888888888765421 11223333333333332 2233334555
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChh
Q 038237 142 GLAISGNGDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 169 (181)
+.. .|+.++|+++++++...|..|...
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 555 689999999999999999987654
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.21 E-value=42 Score=20.75 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=36.2
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC----------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE----------RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++++.+|... +......+++.--. ....-|..|+.-|-..|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666666 55555555442211 1223588888888888888888888888776
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=58.15 E-value=97 Score=25.17 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred hccCCHHH-HHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHH
Q 038237 27 INREQVDI-ARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103 (181)
Q Consensus 27 ~~~~~~~~-a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 103 (181)
...|++-. ..++|+.+++ .++......-..+...|+++.+.+.+....+. +-....+.-++++...+.|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34455543 3455655553 13333333333455678999999988776543 23355677789999999999999999
Q ss_pred HHHHHHHcCCC
Q 038237 104 IKTYIDKNKVK 114 (181)
Q Consensus 104 ~~~~~~~~~~~ 114 (181)
.-+.|....++
T Consensus 379 ~a~~~l~~eie 389 (831)
T PRK15180 379 TAEMMLSNEIE 389 (831)
T ss_pred HHHHHhccccC
Confidence 98888877665
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.14 E-value=32 Score=20.07 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=25.0
Q ss_pred hcCcHHHHHHHHHHHHHcCCC-ccH-HHHHHHHHHHHccCCcchHHH
Q 038237 59 RVNRFREALTLFQEIQTSNIM-GDE-FTIVSILTARANLGALELGEW 103 (181)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~l~~~~~~~~~~~~a~~ 103 (181)
..+...+|+..+....+.-.. |+. .+++.++.+++..|++.++..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666665543222 222 456666677776666665544
No 367
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=58.05 E-value=34 Score=21.07 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=25.2
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
++..+...+..-.|.++++.+.+.+...+..|--.-|+.+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444555566666666666665555555555555555555
No 368
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.75 E-value=47 Score=21.14 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=46.1
Q ss_pred HHHHHHhcccCC-CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHH
Q 038237 33 DIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTY 107 (181)
Q Consensus 33 ~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 107 (181)
+.+.+.|..-.. .|-..|--+=-.|++.-+ ++.++|..|...||-- -...|......+...|++++|.++++.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444433332 344444444444444333 8999999999888643 446677888888899999999999874
No 369
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.59 E-value=1.2e+02 Score=25.42 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=60.9
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+.+ +.+.|+..+......++.. ..|++..+..++++....+. ...+...+-..++. .+......++.+
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~--~~It~~~V~~~Lg~-~~~~~i~~Llda 260 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGS--GQLQEAAVRQMLGS-VDRSHVFRLIDA 260 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 344444443 3456777777666666653 34788888888877665532 12233333333322 244445566666
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
+. .|+...++++++++.+.|..|..
T Consensus 261 L~-~~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 261 LA-QGDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 66 58999999999999998887654
No 370
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.56 E-value=53 Score=21.42 Aligned_cols=59 Identities=5% Similarity=-0.048 Sum_probs=37.8
Q ss_pred HHHHcCCCccHHHHHHHHHHHHcc-CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 72 EIQTSNIMGDEFTIVSILTARANL-GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+++.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4556677655543 3455555543 457788888888888877666666555566666655
No 371
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=56.56 E-value=54 Score=21.50 Aligned_cols=94 Identities=15% Similarity=-0.048 Sum_probs=64.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCch
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVK 133 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~ 133 (181)
-+.+..|+.+.|++.|.+-..- .+-+...||.-..++.-.|+.++|..=+++.... |-. +.....+ |+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa----~vQR--- 121 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQA----FVQR--- 121 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHH----HHHH---
Confidence 3667889999999999987764 2336788999999999999999999888877765 433 3322222 2221
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 134 FTWTTMIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 134 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
-..|-..|+-+.|..=|+...+.|
T Consensus 122 ------g~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 122 ------GLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ------HHHHHHhCchHHHHHhHHHHHHhC
Confidence 112334677777777776665443
No 372
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=56.49 E-value=69 Score=24.37 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
+.|..++-...++++.+.+. ++..-..+.++... |+.+.--.+++.+.++|+.++....+.|...++
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARR----DPEISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhcc----ChHHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 34444444455555555543 22333344444332 444445555555666666666665555555443
No 373
>PRK11906 transcriptional regulator; Provisional
Probab=54.81 E-value=1.1e+02 Score=24.49 Aligned_cols=126 Identities=11% Similarity=0.005 Sum_probs=76.5
Q ss_pred ccHHHHhhhcC---C--CC-hhHHHHHHHHHh---------ccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcH
Q 038237 2 GFTLEIFGTMK---N--KD-VISYTAIVSGYI---------NREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRF 63 (181)
Q Consensus 2 ~~a~~~~~~~~---~--~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~ 63 (181)
+.|+.+|.+.. + |+ ...|..+-.++. ......+|.++-+...+ .|..+...+-.+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 45777788766 3 33 223443332222 13344555555555543 4777777777777888889
Q ss_pred HHHHHHHHHHHHcCCCccH-HHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHh
Q 038237 64 REALTLFQEIQTSNIMGDE-FTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~ 129 (181)
+.+..+|++-..-+ ||. .+|...-..+.-.|+.++|.+.+++-.+. -......+....++.|+.
T Consensus 355 ~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 355 KVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred hhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 99999999987743 554 44444444555689999999998885554 233344444445545554
No 374
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=54.79 E-value=81 Score=22.99 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
..-|+..+. -.+.|++++|...|+.+.... +-+..+=.+++ .++.++-+.++.+.|+...++...
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l-------------~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQL-------------DLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHH-------------HHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444443 346699999999999998652 22333333333 234445569999999999999987
Q ss_pred c-CCCCC
Q 038237 162 A-SIKPD 167 (181)
Q Consensus 162 ~-~~~p~ 167 (181)
. +-.||
T Consensus 100 lyP~~~n 106 (254)
T COG4105 100 LYPTHPN 106 (254)
T ss_pred hCCCCCC
Confidence 6 44444
No 375
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.75 E-value=82 Score=23.01 Aligned_cols=112 Identities=10% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHh
Q 038237 57 YLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFT 135 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~ 135 (181)
|.+-.+..-..++.+-.+.+++.-+..-..+++ +...||+..|...++.-... |.... ..++..+ ..+....
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~----enVfKv~-d~PhP~~ 241 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQ----ENVFKVC-DEPHPLL 241 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccch----hhhhhcc-CCCChHH
Confidence 334444333444444445555554444433332 34567777776666655432 22111 1111111 1112233
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
..-++..|. .+++++|.+.++++.+.|..|.... +.+++.
T Consensus 242 v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv 281 (333)
T KOG0991|consen 242 VKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRV 281 (333)
T ss_pred HHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHH
Confidence 334444443 6799999999999999999886543 334443
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.72 E-value=81 Score=22.96 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHccCCcchHHHHHHHHHHc-------------CCCcchH---HHHHHHHHhHhcCchHhHHHHHHHHHHcCChh-HHHH
Q 038237 92 RANLGALELGEWIKTYIDKN-------------KVKNDIF---AGNALIDMYCKCTVKFTWTTMIVGLAISGNGD-KALD 154 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~---~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~ 154 (181)
|.-.++...|...+....+. ++.++.. -...|+.+ ++.++...|..|..-|...=+.+ .-.+
T Consensus 151 yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t-~e~~~~~~F~~L~~~Y~~~L~rd~~~~~ 229 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLT-CERDNLPLFKKLCEKYKPSLKRDPSFKE 229 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHH-HHHT-HHHHHHHHHHTHH---HHHHTHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHH-HhcCcHHHHHHHHHHhCccccccHHHHH
Confidence 34456677777777666544 1222222 22233333 45567888888888887643222 3345
Q ss_pred HHHHHHHc--CCCCC
Q 038237 155 MFSQMLRA--SIKPD 167 (181)
Q Consensus 155 ~~~~m~~~--~~~p~ 167 (181)
.++++-+. |++|.
T Consensus 230 ~L~~IG~~yFgi~~~ 244 (260)
T PF04190_consen 230 YLDKIGQLYFGIQPP 244 (260)
T ss_dssp HHHHHHHHHH---S-
T ss_pred HHHHHHHHHCCCCCC
Confidence 55555444 65553
No 377
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.10 E-value=1.2e+02 Score=24.66 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=59.9
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+.+. .+.|+..+......++... .|++..+...++.+...+- ..+...+....... .....-.++.+
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~---~It~~~V~~~l~~~-~~~~if~Li~a 251 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGT---PVTRKQVEEALGLP-PQERLRGIAAA 251 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCC-cHHHHHHHHHH
Confidence 4444455443 4567776666655555443 4788888888888765432 23333333332221 23334455566
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
+ ..++.++|+.+++++...|..|..
T Consensus 252 l-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 252 L-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred H-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 5 469999999999999999976653
No 378
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=53.91 E-value=86 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHH
Q 038237 56 GYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEW 103 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 103 (181)
-|.+.|.+++|+.+|..-.. +.| |.+++..-..+|.+..++..|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 45667889999999876443 346 88888888888888887765554
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.89 E-value=84 Score=22.88 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=75.3
Q ss_pred HHhccCCHHHHHHHhcccCCC---------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--cCCCccH--HHHHHHHHH
Q 038237 25 GYINREQVDIARQCFDQMPER---------DYVLWTTMIDGYLRVNRFREALTLFQEIQT--SNIMGDE--FTIVSILTA 91 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~--~~~~~l~~~ 91 (181)
.++-.+.+++|-++|.+.... --..|.-..+.+.+.|.-+++-..|-++-. ..+.|.. .+....|..
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 444555778888887766531 112344444555555655555555544432 1223333 445556677
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--------chHh--HHHHHHH-HHHcCChhHHHHHHHHHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------VKFT--WTTMIVG-LAISGNGDKALDMFSQML 160 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------~~~~--~~~li~~-~~~~~~~~~a~~~~~~m~ 160 (181)
|...|++..|......+-+- .+.+..-+..-|..|-..+ +... .+.=+.. -++.++..+|.++|++..
T Consensus 103 yt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665544443321 2233344444444444333 1111 1111112 245788889999999998
Q ss_pred HcCCCCChhhH
Q 038237 161 RASIKPDEVAY 171 (181)
Q Consensus 161 ~~~~~p~~~t~ 171 (181)
...+..+---|
T Consensus 182 ~~s~~n~LLKy 192 (288)
T KOG1586|consen 182 RSSLDNNLLKY 192 (288)
T ss_pred HHhccchHHHh
Confidence 76554443333
No 380
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=53.39 E-value=87 Score=22.92 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCcH---HHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRF---REALTLFQEIQTSNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 49 ~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
+...++.+|...+.. ++|.++++.+.... |+ ...+-.-++.+.+.++.+.+.+++..|+..-..++ ..+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-SNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-chHHHHH
Confidence 566777777777654 45666666664432 33 34454567777778888888888888887732222 2222223
Q ss_pred HHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh
Q 038237 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 169 (181)
..+- -+. ......+...++.+....+.|...
T Consensus 163 ~~i~-------------~l~-~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIK-------------QLA-EKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHH-------------HHH-hhCcHHHHHHHHHHHHHHhCCChh
Confidence 2221 112 234567777777777776666654
No 381
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=53.07 E-value=1.1e+02 Score=24.11 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHH--HHHHHHHhHhcC--------------------chHh-HHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFA--GNALIDMYCKCT--------------------VKFT-WTT 138 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~ll~~~~~~~--------------------~~~~-~~~ 138 (181)
......+...+..|+|+.|.++++.-+.. -+++++.- -..|+.+-.... |... --.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH
Confidence 34566777777778888877777766654 23343322 223333222111 1111 112
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
--.++.+.|+..++-.+++.+.+..-.|+
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 23456778888888888888877644444
No 382
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=53.00 E-value=46 Score=19.57 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred HhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 38 CFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 38 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
+++.+.+.++.+-...-..-+...+.+.+.++++.++..| ...|....+++...|....
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHH
Confidence 4444444444444444444445566777777777777763 4455566666655554433
No 383
>COG5210 GTPase-activating protein [General function prediction only]
Probab=52.92 E-value=1.2e+02 Score=24.44 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc----CchHhHHHHH--
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC----TVKFTWTTMI-- 140 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~~li-- 140 (181)
-+++..|...|+.+...++..++..+.+...++.+..+++.+--.|...-...+-+++...... .+...+..++
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 441 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQ 441 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHHh
Confidence 3567778888999999999999999999999999999999988877765444444444332211 1111111111
Q ss_pred ------------HHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 141 ------------VGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 141 ------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
....+.+-..+.....+.+.+.++.|+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~ 481 (496)
T COG5210 442 LFLHSGKEAWSSILKFRHGTDRDILLFIEDLLKKDITPTR 481 (496)
T ss_pred hhhhhhhhhhhhhHHhhhhhhhhHHHHHHhhhhcccCchh
Confidence 1224455556777777777777888886
No 384
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=52.26 E-value=79 Score=22.11 Aligned_cols=116 Identities=9% Similarity=-0.037 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CC-CcchHHHHHH-
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KV-KNDIFAGNAL- 123 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l- 123 (181)
...+.++.-+...|+++.|.+.|.-+.... ++.- ..|+.=+..+.+.+.-....+.++.+... .. .......+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR-~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~ 120 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR-SLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH-hcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhc
Confidence 345677777777888888888888777643 3222 34666666666666655554555554321 00 0000001111
Q ss_pred HHHhHhcC---------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 124 IDMYCKCT---------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 124 l~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
+.-.-+.| -...|..++..-.+....+++.++.++|.+-=.
T Consensus 121 ~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl 170 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVL 170 (199)
T ss_pred ccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhc
Confidence 00111112 123566777777666777788888888877633
No 385
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=52.09 E-value=1.3e+02 Score=24.65 Aligned_cols=145 Identities=8% Similarity=-0.001 Sum_probs=85.2
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
|....-+++..|+++..+.-.+.+-.+|.. .+-..|-.++..|..+ ..++-..+++++.+..+. |...-.-|..-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 444566677777777777776666666653 5667788888888888 557777888877776543 333323333333
Q ss_pred HccCCcchHHHHHHHHHHcCCC-----cchHHHHHHHHHhH---------------hcC---chHhHHHHHHHHHHcCCh
Q 038237 93 ANLGALELGEWIKTYIDKNKVK-----NDIFAGNALIDMYC---------------KCT---VKFTWTTMIVGLAISGNG 149 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~---------------~~~---~~~~~~~li~~~~~~~~~ 149 (181)
-+ ++.+.+...|.....+=++ .-..+|.-|...-+ ..| -.+.+.-+-.-|....++
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 33 5555555555544432111 11123333333111 111 345566666778888999
Q ss_pred hHHHHHHHHHHHc
Q 038237 150 DKALDMFSQMLRA 162 (181)
Q Consensus 150 ~~a~~~~~~m~~~ 162 (181)
++|.+++..+.+.
T Consensus 222 ~eai~Ilk~il~~ 234 (711)
T COG1747 222 TEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998866543
No 386
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.91 E-value=21 Score=24.86 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC------------------CcHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE------------------RDYVLWTTMIDGYLRVNRFREALTLFQE 72 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (181)
=.+++..|.+..++.+..++++.|.+ +--...|.....+.++|..+.|+.++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34678889999999999999998863 2344677888899999999999999874
No 387
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=51.75 E-value=4.8 Score=21.58 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
|--++.+.+|+.|..+...|.+..|+-.+.=|
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 44567778888888877777777766555444
No 388
>PRK07914 hypothetical protein; Reviewed
Probab=51.73 E-value=1e+02 Score=23.14 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=50.7
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH-cCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCCh
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNG 149 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~ 149 (181)
+...+.|+..+......++.... ++.....+-++++.- .|-..+... +..+.........--++++.. .|+.
T Consensus 139 ~~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~It~e~----V~~~v~~~~~~~vf~L~dAi~-~g~~ 211 (320)
T PRK07914 139 KEFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGAVDAAA----VRRYHSGKAEVKGFDIADKAV-AGDV 211 (320)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCCcCHHH----HHHHcCCCeechHHHHHHHHH-CCCH
Confidence 33456676667666666666654 345444444554432 121222222 222211111112223444444 8999
Q ss_pred hHHHHHHHHHHHcCCCCChhh
Q 038237 150 DKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 150 ~~a~~~~~~m~~~~~~p~~~t 170 (181)
.+|..+++++...|..|-...
T Consensus 212 ~~A~~~l~~L~~~ge~p~~il 232 (320)
T PRK07914 212 AGAAEALRWAMMRGEPHVVLA 232 (320)
T ss_pred HHHHHHHHHHHHCCCchHHHH
Confidence 999999999999999885543
No 389
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.37 E-value=82 Score=22.02 Aligned_cols=96 Identities=13% Similarity=0.239 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC------CcHHHHHHHHH-HHHhcCc--HHHHHHHHHHHHHcCCCccHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE------RDYVLWTTMID-GYLRVNR--FREALTLFQEIQTSNIMGDEFT 84 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 84 (181)
+...-++.........|++++|..-++.+.+ .-...|..+.. +++..+. +.+|.-++.-....++ |+..-
T Consensus 27 Rei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~E 105 (204)
T COG2178 27 REIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEE 105 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHH
Confidence 3455677777777888999999999988874 24556777666 7777764 6788888877765543 33221
Q ss_pred ----HHHHHHHH--------------HccCCcchHHHHHHHHHH
Q 038237 85 ----IVSILTAR--------------ANLGALELGEWIKTYIDK 110 (181)
Q Consensus 85 ----~~~l~~~~--------------~~~~~~~~a~~~~~~~~~ 110 (181)
.-.-+.|. .+.|+++.|+..++-|.+
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11122222 345788888888877765
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.81 E-value=91 Score=22.40 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=10.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHH
Q 038237 53 MIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m 73 (181)
+-..|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444555555555555554
No 391
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=50.79 E-value=46 Score=21.85 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
+.|.+.++.+ -+.|-+++...+++++++.|+..+..+|+..+...
T Consensus 110 ~GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 110 TGTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred eehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3445555544 44588899999999999999999998888877643
No 392
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.47 E-value=76 Score=21.38 Aligned_cols=66 Identities=12% Similarity=-0.043 Sum_probs=40.9
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 35 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
+.++++..--..+..-..++..+...++.-.|.++++++.+.+..++..|.--.++.+.+.|-+..
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 333333332234444445666666666666788888888888777777666666777777765543
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.08 E-value=1.8e+02 Score=25.57 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCcc-HHHHHHHHHHHHccCCc--chHHHHHHHHHHcCCCcchHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSN--IMGD-EFTIVSILTARANLGAL--ELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~-~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
-|..|+.-|...|+.++|++++.+....- ..+. ..-+--+++-..+.+.. +...+.-.-..+....-...+++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999987632 1111 12222345555444444 3344433333333222222222220
Q ss_pred HHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 124 IDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 124 l~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
-..-+.+ .. ---+-.|......+-+...++.+....-.++..-.+.++.-|+
T Consensus 586 ~~~~~~s---is-~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAES---IS-RDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred Chhhhcc---CC-HHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 0000000 00 0112233345566666777777766655556665555555443
No 394
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.93 E-value=29 Score=16.34 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 148 NGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
.++.|..+|++... +.|+..+|..-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 57899999999987 46888888643
No 395
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=49.61 E-value=56 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHHc
Q 038237 62 RFREALTLFQEIQTS 76 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~ 76 (181)
..++|.++++....+
T Consensus 52 ~~~qAr~Lld~l~~K 66 (94)
T cd08329 52 TPLQARELIDTVLVK 66 (94)
T ss_pred hHHHHHHHHHHHHhh
Confidence 345555555555554
No 396
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=48.70 E-value=1.3e+02 Score=23.42 Aligned_cols=158 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 4 TLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 4 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
|++....+.+ .|...|..--.+|...|.+.+|..=++...+ .++.++--+-.-+...|+.+.++....+..+
T Consensus 174 ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Q ss_pred CCccHHHHHHHHHHHHcc-------------CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------
Q 038237 78 IMGDEFTIVSILTARANL-------------GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------- 131 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------- 131 (181)
+.||.-.+-..-.-+-+. ++|.++.+-.+...+.........++..=..|.-..
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Q ss_pred --------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 132 --------VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 132 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
|+.++---..+|.-...+|.|..=|+...+.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
No 397
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.60 E-value=40 Score=20.98 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
..++..+...+.+-.|.++++.+.+.+...+..|.---|+.+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 345666666777889999999999888888877665555443
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.55 E-value=25 Score=15.30 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 147 GNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
|+.+.|.++|+++... .+-+...|...++
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 5678899999999875 2345666665543
No 399
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=48.55 E-value=1.5e+02 Score=24.37 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+.. +.+.|+..+......++.. ..|++..|...+++....+ . +..+...+....+... ......++.+
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~~~~~-~-~~It~~~V~~vlg~~~-~~~i~~l~~a 255 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQAISFG-D-GKVTYEDALEVTGSVS-QEALDDLVDA 255 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc-c-CCCCHHHHHHHhCCCC-HHHHHHHHHH
Confidence 333444444 3356777776665555553 3478888888888776653 1 2334444444443322 2223345555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
.. .|+...++++++++...|..|.
T Consensus 256 l~-~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 256 IV-EGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred HH-ccCHHHHHHHHHHHHHcCCCHH
Confidence 54 6799999999999999888774
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.72 E-value=60 Score=19.37 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 65 EALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 65 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
.+-++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. .|..
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~ 67 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG 67 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc
Confidence 345677777777753 44444444444446688889999999988 6543
No 401
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.71 E-value=1.4e+02 Score=24.25 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
....++++. ..+++.+|+..+.++...|..|..
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~ 276 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAART 276 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 344556655 447889999999999888876553
No 402
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=47.62 E-value=1.4e+02 Score=23.78 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
++|..+++..+.||...+.-+...|.+.=.++.|..|++-....|
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg 504 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG 504 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc
Confidence 345556677788888888888888888777777777766554443
No 403
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.83 E-value=45 Score=28.51 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH----------HHHHHHHHHHccCCcchHHHHHHHHHHc-C-C
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF----------TIVSILTARANLGALELGEWIKTYIDKN-K-V 113 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~ 113 (181)
...+...++..|....+++...++.++++.- ||+. .|.-.++-.-+-||-++|..+.-.+.+. | +
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 4556778888999999999999999999875 5432 2444455555667778888777766665 3 4
Q ss_pred CcchHHHHH--HHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHhh
Q 038237 114 KNDIFAGNA--LIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP---DEVAYVGVLSA 177 (181)
Q Consensus 114 ~~~~~~~~~--ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~ 177 (181)
.||....-. .-+.+.. ..|-..+..+.|.++|++.-+ +.| +.+.+..|+.+
T Consensus 277 apDm~Cl~GRIYKDmF~~-----------S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIA-----------SNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred CCceeeeechhhhhhhhc-----------cCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 565532111 1111111 123346667778888887655 344 44556666554
No 404
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.52 E-value=66 Score=19.58 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCCC--cHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCC
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVN--RFREALTLFQEIQTSNIM 79 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~ 79 (181)
..++..|...|+.++|.+-++++..| -......++..+...+ .-+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45667777889999999999998766 1222334444444442 234556667777766654
No 405
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=46.33 E-value=88 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHhccCCHHHHHHHhccc
Q 038237 23 VSGYINREQVDIARQCFDQM 42 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m 42 (181)
+..+...+++..|.+....|
T Consensus 21 v~~~W~~~~~k~ai~~~~~~ 40 (164)
T PF13925_consen 21 VRTFWRRNDIKGAIEYAVRM 40 (164)
T ss_pred HHHHHhcCcHHHHHHHHHhc
Confidence 33444455555555554444
No 406
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.38 E-value=1.4e+02 Score=22.81 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=31.3
Q ss_pred hcCcHHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 59 RVNRFREALTLF-QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 59 ~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
+...+++..... ++|++.++ |++.+..++-++......|.+-+++..+-.-+ ..-+|.-|+.+++.+|
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH----HHHhhhHHHHHHhcCC
Confidence 333455554444 34555554 56655444444444444444332222111111 2335666777776666
No 407
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.32 E-value=1.5e+02 Score=23.24 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=57.5
Q ss_pred HHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCCcchHHH
Q 038237 49 LWTTMIDGYLR---VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVKNDIFAG 120 (181)
Q Consensus 49 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~ 120 (181)
.+-.++.++.+ .++.+.|+..+..|.+.|..|....--.++.++-..|..+ .+...++....-|.+-.....
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l 308 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIAL 308 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34455666665 4789999999999999999988877777777766665432 345556666666765433332
Q ss_pred HHHHHHhHhcC-chHhHHHHHHHH
Q 038237 121 NALIDMYCKCT-VKFTWTTMIVGL 143 (181)
Q Consensus 121 ~~ll~~~~~~~-~~~~~~~li~~~ 143 (181)
.-.+-.++..+ +..+|.++-.+.
T Consensus 309 ~~~~~~l~~~pksn~~~~a~~~a~ 332 (413)
T PRK13342 309 AQAVIYLALAPKSNAAYTAINAAL 332 (413)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHH
Confidence 22222233332 555555544443
No 408
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.26 E-value=49 Score=19.44 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC-CCC
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRAS-IKP 166 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~-~~p 166 (181)
+++-+.++.--++|+++++=|.++| +.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 4455556888999999999998886 443
No 409
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=45.25 E-value=74 Score=19.73 Aligned_cols=59 Identities=7% Similarity=-0.086 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
...-+..+-.....|++.+..+.+.+|-| .+++--|.++|+-++.+ +.+....|-.+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRR----------------vND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRR----------------VNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33344444445667888777777776666 88888899999888876 2223336666654
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.89 E-value=1.6e+02 Score=23.37 Aligned_cols=154 Identities=8% Similarity=0.095 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc---------CCCccH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS---------NIMGDE 82 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~ 82 (181)
.+.-+-+-|..+|+++.|.+.+...+. ..+..|-.+|....-.|+|........+-... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 355667788899999999999988653 24445667777777788888887777766553 133333
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCC-------CcchHHHHHHHHHhHhcC--------------------chHh
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKV-------KNDIFAGNALIDMYCKCT--------------------VKFT 135 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~--------------------~~~~ 135 (181)
.++..+..-+.+ .+..|...|-....... +.|+.+|..| .+.+.-+ .+..
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL-cALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL-CALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhh-HhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 444444443333 44444333322221111 1233444332 2222111 4555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCCChhhHHHHHh
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRA-----SIKPDEVAYVGVLS 176 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~t~~~li~ 176 (181)
+..+..-| .+++...++++++++.. -+.|...+...+|+
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 55555555 56888899999988764 24566666665554
No 411
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.23 E-value=61 Score=18.48 Aligned_cols=80 Identities=6% Similarity=-0.006 Sum_probs=34.9
Q ss_pred HhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHccCCcchHH
Q 038237 26 YINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF---TIVSILTARANLGALELGE 102 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~ 102 (181)
.++.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..|+.. -++.+..++ ..|+ .
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~----~ 72 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYAA-ENGN----L 72 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHHH-HTTH----H
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHHH-HcCC----H
Confidence 4556666666666663322222 11233333444553 4444444455555443 233333332 2333 3
Q ss_pred HHHHHHHHcCCCcc
Q 038237 103 WIKTYIDKNKVKND 116 (181)
Q Consensus 103 ~~~~~~~~~~~~~~ 116 (181)
++++.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555555544
No 412
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.93 E-value=1.2e+02 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=33.5
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|-..-..+|--|.|+|+.++|.++.++..+. .......|...+..|..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 4455677888888999999999999666544 44556666777776654
No 413
>PRK09857 putative transposase; Provisional
Probab=43.60 E-value=1.4e+02 Score=22.31 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
+..++.-..+.++.++..++++.+.+.. +......-.+..- +-+.|.-+++.++.++|...|+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEq----------------L~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAER----------------LRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 4566666667777777778777776652 2112111122222 2335555778999999999998
Q ss_pred CCCh
Q 038237 165 KPDE 168 (181)
Q Consensus 165 ~p~~ 168 (181)
.++.
T Consensus 272 ~~~~ 275 (292)
T PRK09857 272 PLAD 275 (292)
T ss_pred CHHH
Confidence 7663
No 414
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=43.53 E-value=66 Score=18.72 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=13.3
Q ss_pred CCHHHHHHHhcccCCCcHHHHHHHHHHH
Q 038237 30 EQVDIARQCFDQMPERDYVLWTTMIDGY 57 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~~~~~~li~~~ 57 (181)
...++|.++++..+..+..++..+..++
T Consensus 43 T~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 43 TNQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444455555544444444444444444
No 415
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.49 E-value=1.3e+02 Score=24.38 Aligned_cols=110 Identities=10% Similarity=0.059 Sum_probs=68.8
Q ss_pred HHHHHHcCCCccHHH---HHHHHHHHHccCCcchHHHHHHHHHHcCC---CcchHHHHHHHHHhHhcC---chHhHHHHH
Q 038237 70 FQEIQTSNIMGDEFT---IVSILTARANLGALELGEWIKTYIDKNKV---KNDIFAGNALIDMYCKCT---VKFTWTTMI 140 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~---~~~~~~~li 140 (181)
+.-+.+.+..|++.+ -++++.+..-.-..++-..++........ ..|..-+...++-|...| |...|...+
T Consensus 193 lrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~ 272 (543)
T KOG2214|consen 193 LRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVM 272 (543)
T ss_pred HHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344555566677643 55666666666667777777766554433 333334556667777777 666676666
Q ss_pred HHHHHcCChhHHHHHHHHHHHc---------------C-CCCChhhHHHHHhhhc
Q 038237 141 VGLAISGNGDKALDMFSQMLRA---------------S-IKPDEVAYVGVLSART 179 (181)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~---------------~-~~p~~~t~~~li~~~~ 179 (181)
.-+...--+.+|.+.-.++..- . -.||...|.++..+|+
T Consensus 273 ~~~~~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs 327 (543)
T KOG2214|consen 273 KKRLGNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCS 327 (543)
T ss_pred HHHhcchhHHHHHHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhcc
Confidence 6666666666776665555211 1 2578889999988886
No 416
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.26 E-value=1.2e+02 Score=21.58 Aligned_cols=88 Identities=10% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHh--ccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 19 YTAIVSGYI--NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 19 ~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
|...+.+|. ..+++++|.+.+-+-.-+. .--.-++.++...|+...|++++..+.-..-.+ .....++.. ..++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~-~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLIP-WFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCCc-ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcC
Confidence 445555544 3455666666653332110 111135566666677777777766654432222 112222222 4445
Q ss_pred CcchHHHHHHHHHH
Q 038237 97 ALELGEWIKTYIDK 110 (181)
Q Consensus 97 ~~~~a~~~~~~~~~ 110 (181)
.+.+|...-+...+
T Consensus 155 ~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 155 LVTEAFSFQRSYPD 168 (226)
T ss_pred CHHHHHHHHHhCch
Confidence 56666555444443
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.07 E-value=1.4e+02 Score=23.17 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=39.8
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHc--cCCcchHHHHHHHHHHc
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEF--TIVSILTARAN--LGALELGEWIKTYIDKN 111 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 111 (181)
..+.+.+++..|.++|+++... ++++.. .+..+..+|.. ..++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999887 665554 45566666653 45667788888877654
No 418
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.70 E-value=2.2e+02 Score=24.47 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=42.2
Q ss_pred HHHHHHh---cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc-----chHHHHHHHHHHcCCCc
Q 038237 53 MIDGYLR---VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL-----ELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 53 li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~ 115 (181)
.|+++.+ .++++.|+..+.+|.+.|..|....-..++.+.-..|.. ..+...++....-|.+-
T Consensus 261 ~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE 331 (725)
T PRK13341 261 TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPE 331 (725)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcc
Confidence 4555444 478999999999999999988877777777666555542 22344445555556543
No 419
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.44 E-value=1.8e+02 Score=23.48 Aligned_cols=101 Identities=7% Similarity=0.044 Sum_probs=56.8
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++....+.. +...|+..+......+... ..|++..+...++.....+ ....+...+-...+.. +....-.++.+
T Consensus 181 ~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~--~~~It~~~V~~~lg~~-~~~~vf~Li~a 255 (486)
T PRK14953 181 EQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYG--EGKVTIKVVEEFLGIV-SQESVRKFLNL 255 (486)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhCCC-CHHHHHHHHHH
Confidence 333334433 3345666666555554443 3377777877777765443 1223333333333222 22223344444
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
. ..|+.+.|+.+++++...|..|....
T Consensus 256 i-~~~d~~~al~~l~~L~~~g~~~~~iL 282 (486)
T PRK14953 256 L-LESDVDEAIKFLRTLEEKGYNLNKFW 282 (486)
T ss_pred H-HCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4 37899999999999998888776443
No 420
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=41.87 E-value=1.3e+02 Score=21.60 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=32.0
Q ss_pred HHHHHHcCCCcch---HHHHHHHHHhHhcCchHhHHHHHHHHHHcCCh---hHHHHH---------HHHHHHcCCCCChh
Q 038237 105 KTYIDKNKVKNDI---FAGNALIDMYCKCTVKFTWTTMIVGLAISGNG---DKALDM---------FSQMLRASIKPDEV 169 (181)
Q Consensus 105 ~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~---------~~~m~~~~~~p~~~ 169 (181)
++.+...+..|.. ..|+.++.. +.++|++||++.++. .+|+.. ++.+...+..|+..
T Consensus 108 L~~i~~~~~i~~~~~~~lw~~~i~~--------~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~ 179 (234)
T PF10474_consen 108 LDEISKQGPIPPEVQNVLWDRLIFF--------AFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNRE 179 (234)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence 3344444444444 445555544 445778888754432 233322 23333334456655
Q ss_pred hHHHHHhhh
Q 038237 170 AYVGVLSAR 178 (181)
Q Consensus 170 t~~~li~~~ 178 (181)
-....|+||
T Consensus 180 ~Ve~YIKAy 188 (234)
T PF10474_consen 180 YVENYIKAY 188 (234)
T ss_pred HHHHHHHHH
Confidence 555555554
No 421
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=41.79 E-value=39 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.0
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 58 LRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+-.|+...|.++++.+..+|+.|-...|.
T Consensus 8 ~L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 8 LLAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HHTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 44689999999999999999998876654
No 422
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.57 E-value=1.4e+02 Score=21.95 Aligned_cols=24 Identities=4% Similarity=0.149 Sum_probs=13.5
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
+..+...|+.+|- .|+.+.+..++
T Consensus 227 d~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 227 DSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 5666666666665 44555544443
No 423
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=1.7e+02 Score=22.72 Aligned_cols=132 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred cCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHccCCcchHH
Q 038237 29 REQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS---NIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
.|...+|-..++++.. .|..+++-.=++|...|+.+.-...+++.... +++-....-+...-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 3444455445555443 25556666667777777777777777776432 33322333344444555677777777
Q ss_pred HHHHHHHHcCCCc--chHHHHHHHHHhHhcC-------------------chHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 103 WIKTYIDKNKVKN--DIFAGNALIDMYCKCT-------------------VKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
..-++-.+-+.-. ...+-..++..-++.. -..-|..-.-.+...+.++.|+++|++=.
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 7665554432211 1111112222222211 11223333344556789999999997643
No 424
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=41.29 E-value=24 Score=25.16 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCCChhh
Q 038237 151 KALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 151 ~a~~~~~~m~~~~~~p~~~t 170 (181)
.|+++|+.+.+.|++||..+
T Consensus 68 ~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 68 SALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred hHHHHHHHHHhcCCCccccc
Confidence 58999999999999998764
No 425
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=40.53 E-value=74 Score=20.48 Aligned_cols=75 Identities=7% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 33 ~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+++.++++++.+|=+..+--+...-... ++=+-..++ ..+..+-..++++|..+---..=..+.+.+.+.+
T Consensus 61 de~K~lL~eLV~PVPelFRdvAk~kIAg-------kIgelAl~e--~a~~it~d~iIrGYI~ATPKRDhkfL~k~L~~~~ 131 (141)
T PF11084_consen 61 DEQKALLEELVSPVPELFRDVAKHKIAG-------KIGELALEE--KASEITRDLIIRGYILATPKRDHKFLRKKLKEKN 131 (141)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHH-------HHHHHHHHc--CcccccHHHHHhhhhhcCCchhHHHHHHHHHHcC
Confidence 5666777777766554444333321111 111111111 1344555566777766555445555555555555
Q ss_pred CCcc
Q 038237 113 VKND 116 (181)
Q Consensus 113 ~~~~ 116 (181)
+..+
T Consensus 132 ID~~ 135 (141)
T PF11084_consen 132 IDYT 135 (141)
T ss_pred CCch
Confidence 5443
No 426
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.46 E-value=2.1e+02 Score=23.70 Aligned_cols=91 Identities=9% Similarity=-0.006 Sum_probs=51.3
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALD 154 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 154 (181)
+.|+..+......+...+ .|++..+...++++...+- ...+...+-..+...++ .....++++.. .|+.+++++
T Consensus 194 ~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~--~~It~e~V~~ll~~s~~-~~vf~Lidal~-~~d~~~al~ 267 (585)
T PRK14950 194 AEGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYG--GEISLSQVQSLLGISGD-EEVKALAEALL-AKDLKAALR 267 (585)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHhcCCCH-HHHHHHHHHHH-cCCHHHHHH
Confidence 445555555555444433 3677777777777654321 11222222222222222 22335566654 689999999
Q ss_pred HHHHHHHcCCCCChhhH
Q 038237 155 MFSQMLRASIKPDEVAY 171 (181)
Q Consensus 155 ~~~~m~~~~~~p~~~t~ 171 (181)
+++++.+.|..|-....
T Consensus 268 ~l~~L~~~g~~~~~il~ 284 (585)
T PRK14950 268 TLNAVAADGADLRQFTR 284 (585)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 99999998886554433
No 427
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=39.77 E-value=71 Score=18.01 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
+.+++.++++.+... +...+..+..++...+
T Consensus 42 ~~~k~~~Lld~l~~k----g~~af~~F~~~L~~~~ 72 (80)
T cd01671 42 RQDKARKLLDILPRK----GPKAFQSFLQALQETD 72 (80)
T ss_pred hHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcC
Confidence 455555555555554 2344445555554433
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=1.6e+02 Score=22.18 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH----HcCCCCChhhHH
Q 038237 138 TMIVGLAISGNGDKALDMFSQML----RASIKPDEVAYV 172 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~t~~ 172 (181)
-+|..+-+.|++.+|+.+.+.+. +-.=+|+-++..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 46777778999999988766554 333455555443
No 429
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.68 E-value=57 Score=22.43 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=26.9
Q ss_pred HHhcccCCC--cHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 37 QCFDQMPER--DYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 37 ~~~~~m~~~--~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..|++++.| +...|..++..+...+ +.+...+++..++. ++..+...++.-+.
T Consensus 75 ~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~----~n~~~L~~l~~~L~ 132 (192)
T cd04402 75 DFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPR----PNVLLLKHLICVLH 132 (192)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHH
Confidence 345677765 5666777777654332 12233333443333 45555555554443
No 430
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.97 E-value=78 Score=18.23 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCHHHHHHHhcccCC---CcHHHHHHHHHHHHhc
Q 038237 30 EQVDIARQCFDQMPE---RDYVLWTTMIDGYLRV 60 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 60 (181)
-+.+.|.+++.+++. +++..||++-.-+.++
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 356788888888875 5888888877666554
No 431
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.84 E-value=1.6e+02 Score=21.80 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
.-...+..+...|++.+|++++.+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344455556666777777776666554
No 432
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.82 E-value=1e+02 Score=20.56 Aligned_cols=51 Identities=6% Similarity=0.069 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 62 RFREALTLFQEIQTSN-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
|.++=+.++.+++..| +.......-.-+....+.++++.|.+|+..+....
T Consensus 69 D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h 120 (157)
T PF07304_consen 69 DIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDH 120 (157)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 4555556666666655 44444444444555567899999999999998753
No 433
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=38.63 E-value=2.5e+02 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=24.7
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 144 AISGNGDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
...|+.+.|.++++.|....+.|...|+..
T Consensus 128 l~~~~~~~a~~~y~~ls~~~f~paTPtl~N 157 (699)
T PRK07632 128 LANGDKAKAKQFISAMVEQRYQPATPTFLN 157 (699)
T ss_pred HcCCCHHHHHHHHHHHHcCCeecCCCcccC
Confidence 346788899999999999988888777653
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.26 E-value=1.1e+02 Score=19.94 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
+..--.++..+.+.+..-.|.++++++.+.+...+..|.--.++.+...|-
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334456666677666667778888888877666655555555566665553
No 435
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.99 E-value=2.8e+02 Score=24.26 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=59.1
Q ss_pred HHHHHHHHHHH-HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEIQ-TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+++.. ++|+..+......+.+. ..|++..+..++++....+. +..+...+-..++.. |......++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~--~~It~~~V~~~LG~~-d~~~i~~ll~a 255 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSA--NEVTETAVSGMLGAL-DQTYMVRLLDA 255 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45555555543 45666666555444433 36888889998877665431 122333232322221 44445666665
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+. .++.++++++++++...|+.+.
T Consensus 256 L~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 256 LA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 55 5899999999999999888654
No 436
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.81 E-value=43 Score=27.42 Aligned_cols=69 Identities=7% Similarity=0.088 Sum_probs=32.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCC--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-.. ...-|..-+.-+.++|+...+..+-+.+.+
T Consensus 396 lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 396 LLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333333345555667788888888888888888766542 334577777777888887776666665553
No 437
>PLN03025 replication factor C subunit; Provisional
Probab=37.47 E-value=1.7e+02 Score=21.83 Aligned_cols=106 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHH
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMI 140 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li 140 (181)
.+-+-...+-....+.|+..+......++..+. |++..+...++.........+... +...........-..++
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~----v~~~~~~~~~~~i~~~i 232 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQEN----VFKVCDQPHPLHVKNIV 232 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHH----HHHHcCCCCHHHHHHHH
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 141 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
.... .+++++|+..+.+|...|+.|.......
T Consensus 233 ~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il~~l 264 (319)
T PLN03025 233 RNCL-KGKFDDACDGLKQLYDLGYSPTDIITTL 264 (319)
T ss_pred HHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHH
No 438
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.37 E-value=2.2e+02 Score=22.95 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=58.9
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++....+... ...|+..+......++... .|++..+...++.+....- +..+...+-...... .......++.+
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~--~~It~e~V~~~l~~~-~~~~i~~li~s 253 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSE--GKITLETVHEALGLI-PIEVVRDYINA 253 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 4444444443 3456666666655555532 4777778777777654311 112222333333222 22333444554
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
. +.++++.|+.++.+|...|..|....-
T Consensus 254 i-~~~d~~~Al~~l~~ll~~Gedp~~i~r 281 (472)
T PRK14962 254 I-FNGDVKRVFTVLDDVYYSGKDYEVLIQ 281 (472)
T ss_pred H-HcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4 479999999999999999998876543
No 439
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.31 E-value=67 Score=16.97 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
+-.++.+.|++++|.+..+.+.+ +.|+-.-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 44567789999999999999987 467655554443
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.20 E-value=1.6e+02 Score=21.20 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=37.8
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
..-+-.-+.+.|++++|..+|+.+... --..-|..++.. +...+..+..+.|+.+..+.+-=+|
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~---yr~egW~~l~~~--------~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASS---YRREGWWSLLTE--------VLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH---HHhCCcHHHHHH--------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667788899999999999988432 001112222222 2224555666677777776655444
No 441
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.75 E-value=2.1e+02 Score=22.64 Aligned_cols=82 Identities=10% Similarity=0.019 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCCc-c
Q 038237 46 DYVLWTTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVKN-D 116 (181)
Q Consensus 46 ~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~-~ 116 (181)
+-..+-.+|+++.|+ .+++.|+..+.+|.+.|-.|-...--.++-+.-..|..+ .+...++....-|.+- .
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~ 324 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEAR 324 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHH
Confidence 444566678888776 579999999999999998888777777777777666533 2444555555666543 3
Q ss_pred hHHHHHHHHHh
Q 038237 117 IFAGNALIDMY 127 (181)
Q Consensus 117 ~~~~~~ll~~~ 127 (181)
...-++.+...
T Consensus 325 i~LAqavvyLA 335 (436)
T COG2256 325 IALAQAVVYLA 335 (436)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 442
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.69 E-value=65 Score=24.44 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=29.4
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGV 174 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~l 174 (181)
|..---.+++.|.++|.+++|+++..-.+.. .--|+......+
T Consensus 105 diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 105 DILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 3334456778888899999999999888755 234555444443
No 443
>PRK11906 transcriptional regulator; Provisional
Probab=36.45 E-value=2.3e+02 Score=22.82 Aligned_cols=126 Identities=12% Similarity=0.119 Sum_probs=77.1
Q ss_pred hHH--HHHHHHHhcc-----CCHHHHHHHhcccC---CCc---HHHHHHHHHHHHh---------cCcHHHHHHHHHHHH
Q 038237 17 ISY--TAIVSGYINR-----EQVDIARQCFDQMP---ERD---YVLWTTMIDGYLR---------VNRFREALTLFQEIQ 74 (181)
Q Consensus 17 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~---~~~---~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 74 (181)
..| ...+.+.... ...+.|..+|.+.. .-| ..+|..+-..+.. .....+|.++-++-.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 6677776652 24577888888887 322 3344433333222 223556666666666
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 153 (181)
+.+- -|......+-.+..-.++++.+...|++-...+.. ++...|..++..+ +|+.++|.
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~------------------~G~~~~a~ 392 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH------------------NEKIEEAR 392 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH------------------cCCHHHHH
Confidence 6543 25666666666667777799999999988776432 3444444444444 88888888
Q ss_pred HHHHHHHH
Q 038237 154 DMFSQMLR 161 (181)
Q Consensus 154 ~~~~~m~~ 161 (181)
+.+++-.+
T Consensus 393 ~~i~~alr 400 (458)
T PRK11906 393 ICIDKSLQ 400 (458)
T ss_pred HHHHHHhc
Confidence 88888443
No 444
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.42 E-value=1.1e+02 Score=20.25 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=27.9
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 145 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
+.|-..+...++++|.++|+..+..+|+-+++
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 36788888899999999999999999988775
No 445
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=2e+02 Score=22.17 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCccHHHHHHH--HHHHHccCCcchHHHHHHHHHH-----cCCCcchHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSN---IMGDEFTIVSI--LTARANLGALELGEWIKTYIDK-----NKVKNDIFA 119 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 119 (181)
...++...-+.++.++|++.++++...- -.|+...|... .+.+...||..++.+++.+.++ .+++|++.+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 3345555556678999999999987532 34677666544 3444568999999999988887 577775654
Q ss_pred -HHHHHHHhH
Q 038237 120 -GNALIDMYC 128 (181)
Q Consensus 120 -~~~ll~~~~ 128 (181)
|..+-+-|-
T Consensus 158 ~fY~lssqYy 167 (380)
T KOG2908|consen 158 SFYSLSSQYY 167 (380)
T ss_pred hHHHHHHHHH
Confidence 444444443
No 446
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=35.49 E-value=1.4e+02 Score=20.27 Aligned_cols=79 Identities=6% Similarity=-0.071 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHcC----CCccH---HHHHHHHHHHHccCCcchHHHHHHHHHH-cCCCcchHHHHHHHHHhHhcCch
Q 038237 62 RFREALTLFQEIQTSN----IMGDE---FTIVSILTARANLGALELGEWIKTYIDK-NKVKNDIFAGNALIDMYCKCTVK 133 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~ 133 (181)
+-++|..+|..+.... ..++. ......+..+.+.. .-++++.+.+ .|+.|......-++..+++.-+.
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4556777766654422 23332 22233333344333 3455666664 67777777777777766654433
Q ss_pred HhHHHHHHHHH
Q 038237 134 FTWTTMIVGLA 144 (181)
Q Consensus 134 ~~~~~li~~~~ 144 (181)
.....+.+.+.
T Consensus 184 ~~~~riwD~~l 194 (199)
T smart00164 184 EIVLRIWDVLF 194 (199)
T ss_pred HHHHHHHHHHH
Confidence 34344444433
No 447
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=35.45 E-value=95 Score=18.20 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
....+-....+.|+.+.|..+++.+. . -..-+..+++++...|.-..|
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r----~~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-R----RDNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-c----cCChHHHHHHHHHHcCCHHHH
Confidence 33444444455666677777776666 2 222344566666666654444
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.37 E-value=1.1e+02 Score=19.11 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIV 141 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~ 141 (181)
..++|..+.+.+...+-. ...+--+-+..+...|++++|.. .-.....||...|-+|-..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a~--------------- 80 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCAW--------------- 80 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHHH---------------
Confidence 456777777777665431 23333344555667777777711 1112345666655554432
Q ss_pred HHHHcCChhHHHHHHHHHHHcC
Q 038237 142 GLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
+.|-.+++...+.++..+|
T Consensus 81 ---klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 81 ---KLGLASALESRLTRLASSG 99 (116)
T ss_dssp ---HCT-HHHHHHHHHHHCT-S
T ss_pred ---hhccHHHHHHHHHHHHhCC
Confidence 3666667777776665554
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.13 E-value=1.1e+02 Score=22.71 Aligned_cols=83 Identities=12% Similarity=-0.027 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN-----IMGDEFTIVSILTARA 93 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~ 93 (181)
-...+..+...|++..|.++..+..+-- ..+..+-..-.-..++.+.....+++.... ...|+..|..++.||.
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~~l-~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~ 208 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQLL-EELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQ 208 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445666778888888888887766410 011100000000123344444444433211 1478888999999999
Q ss_pred ccCCcchHH
Q 038237 94 NLGALELGE 102 (181)
Q Consensus 94 ~~~~~~~a~ 102 (181)
-.|+...+.
T Consensus 209 lLgk~~~~~ 217 (291)
T PF10475_consen 209 LLGKTQSAM 217 (291)
T ss_pred HHhhhHHHH
Confidence 888765544
No 450
>PRK05629 hypothetical protein; Validated
Probab=34.95 E-value=1.9e+02 Score=21.59 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=49.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGN 148 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~ 148 (181)
-+.+.+.|...+......++..+. ++.....+-++++.-. +-. .|..- +..++...-...---++++.. .|+
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~---It~e~-V~~~v~~~~~~~iF~l~dAv~-~g~ 208 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGVG--SDLRELASAISQLVEDTQGN---VTVEK-VRAYYVGVAEVSGFDIADLAC-AGQ 208 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHHhcCCCC---cCHHH-HHHHhCCCccchHHHHHHHHH-cCC
Confidence 344556676666666666666554 2444444444444321 111 12111 122211111112222444444 899
Q ss_pred hhHHHHHHHHHHHcCCCCChh
Q 038237 149 GDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~~~p~~~ 169 (181)
..+|+.+++++...|..|-..
T Consensus 209 ~~~Al~~l~~l~~~g~~pi~i 229 (318)
T PRK05629 209 VSKAVASTRRALQLGVSPVAL 229 (318)
T ss_pred HHHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999998554
No 451
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.76 E-value=1.5e+02 Score=20.11 Aligned_cols=114 Identities=13% Similarity=0.186 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc--chHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN--DIFAGNALIDM 126 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 126 (181)
.+..++..--+......++.++++...- ...-.-+.-|.+.|+++.+..-+...+..--.. ...++..+..-
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444444444555555555554331 112244666677777777776666555431111 23333332222
Q ss_pred hHhcC---chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 127 YCKCT---VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 127 ~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
.-..- -...|..|... ....++..++++.+.+.++.+|++.+
T Consensus 133 ve~ii~~~r~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 133 VEKIIEEFREKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 21100 01122222222 24677888888888888888877654
No 452
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.47 E-value=1.1e+02 Score=18.51 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 117 IFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
...|..|..=.-+.|...|++.|+.++...|.-.-|..+-+.+...|.
T Consensus 48 eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~~ 95 (96)
T cd08315 48 EQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSGK 95 (96)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcCC
Confidence 334444444444455556677788888889999999999888877764
No 453
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=34.40 E-value=73 Score=18.87 Aligned_cols=40 Identities=8% Similarity=-0.100 Sum_probs=19.0
Q ss_pred HhcccCCCcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Q 038237 38 CFDQMPERDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSN 77 (181)
Q Consensus 38 ~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~ 77 (181)
+++.+.+.++.+-.-.-...+... +-++|..+++.+...|
T Consensus 21 l~d~L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG 63 (86)
T cd08785 21 LTPYLRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRG 63 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcC
Confidence 444444444433333333333333 3366666666666654
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.32 E-value=3.4e+02 Score=24.20 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHc
Q 038237 50 WTTMIDGYLRVN--RFREALTLFQEIQTS 76 (181)
Q Consensus 50 ~~~li~~~~~~~--~~~~a~~~~~~m~~~ 76 (181)
...+|.+|.+.+ ++++|+.+..++++.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345555555555 555666666555544
No 455
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=34.26 E-value=2e+02 Score=21.45 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+++.+. .+.|+..+......++... .|++..+...++.....+-..+... +-...........-..++++
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~--~gdlr~l~~~l~~~~~~~~~It~~~---v~~~~~~~~~~~~i~~l~~a 261 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA--GGDLRKAILTLQTAALAAGEITMEA---AYEALGDVGTDEVIESLLDA 261 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCCCCHHH---HHHHhCCCCCHHHHHHHHHH
Confidence 3444455443 3456666666666666554 5777777666665543222222221 11111111112233345555
Q ss_pred HHHcCChhHHHHHHHHHH-HcCCCCC
Q 038237 143 LAISGNGDKALDMFSQML-RASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~-~~~~~p~ 167 (181)
.. .|+.++|..+++++. +.|+.|.
T Consensus 262 i~-~~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 262 AE-AGDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred HH-cCCHHHHHHHHHHHHHHcCCCHH
Confidence 54 679999999999997 6788765
No 456
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=33.93 E-value=91 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhh
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
.|+..+++..++++.+.|..|....
T Consensus 27 ~~d~~~~l~~~~~l~~~G~d~~~~l 51 (143)
T PF12169_consen 27 EGDAAEALELLNELLEQGKDPKQFL 51 (143)
T ss_dssp TT-HHHHHHHHHHHHHCT--HHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 7899999999999999998776543
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.77 E-value=1.3e+02 Score=19.14 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHHH----c-CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHh
Q 038237 61 NRFREALTLFQEIQT----S-NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFT 135 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 135 (181)
+.-.....++++... . ..+ |-.-|-.+--.+++. .+.+..+|+.|...|+...... -
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~-nD~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~---------------f 101 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYK-NDERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLAL---------------F 101 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGT-T-HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHH---------------H
T ss_pred CchhHHHHHHHHHHHHHhhhHhhc-CCHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHH---------------H
Confidence 444444555555432 1 122 333343344444443 3489999999999877644322 2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
|..--..+.+.|++++|.++|+.-
T Consensus 102 Y~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 102 YEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Confidence 333344455599999999999863
No 458
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=33.61 E-value=88 Score=24.86 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=25.7
Q ss_pred HHHHHHHHH--HHccCCcchHHHHHHHHHHcCCCcchHHHH
Q 038237 83 FTIVSILTA--RANLGALELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 83 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
.++...+.+ +++.|+...+..+|+..++.|.+ |..|..
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLS 55 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLS 55 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHH
Confidence 344444433 57888888899999988888766 444433
No 459
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.37 E-value=2.1e+02 Score=21.54 Aligned_cols=126 Identities=9% Similarity=0.020 Sum_probs=79.2
Q ss_pred HHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc---cCCcchHHHHHH
Q 038237 33 DIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN---LGALELGEWIKT 106 (181)
Q Consensus 33 ~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~ 106 (181)
+.-+.+++...+ .+...+-..|..+.+..+.++..+.++++...... +...|...++.... ...++....+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344455555433 35666777888888888889999999998876322 55666666665544 234556666666
Q ss_pred HHHHc------CC----CcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCh
Q 038237 107 YIDKN------KV----KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDE 168 (181)
Q Consensus 107 ~~~~~------~~----~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~ 168 (181)
+..+. +. .+-..+...++..+.+ +...+.++|..+.|..+++-+.+-++ .|+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r---------~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR---------LCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHH---------HHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 55542 11 1222334444444433 55556789999999999999988864 4443
No 460
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=33.35 E-value=1.4e+02 Score=19.38 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHHHHHHHhHhcC----chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 038237 119 AGNALIDMYCKCT----VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK 165 (181)
Q Consensus 119 ~~~~ll~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 165 (181)
-|.-.+.++...| |. ....++--+.-.|+++.|+++.+-..++|..
T Consensus 31 ~Y~p~v~g~L~~g~g~qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 31 KYLPWVEGVLASGSGAQDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHHHHHHHHHcCCCCcCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 4555566655544 32 2334555566699999999999999999853
No 461
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=32.94 E-value=44 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhh
Q 038237 149 GDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~~~p~~~t 170 (181)
+..|.++++++.++|+.||..|
T Consensus 241 ~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 241 LGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred eccHHHHHHHHHHcCCCCceec
Confidence 3346666666666666665543
No 462
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.91 E-value=2.9e+02 Score=23.04 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=60.4
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+.+. .+.|+..+......++. ...|++..+..+++++...+- ....++..+....+.. +......++.+
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~-~~~It~~~v~~llg~~-~~~~i~~lv~a 255 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAA-DTHVTYQRALGLLGAT-DVALIDDAVDA 255 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccC-CCCcCHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3444444443 44576666665554433 345788888888888775422 3344555555554433 23333345555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+. .++...++++++++...|..|.
T Consensus 256 l~-~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 256 LA-ADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 54 6899999999999988887665
No 463
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.82 E-value=1e+02 Score=17.79 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 51 TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 51 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
..++..+.+ ++++++...+.++...|+.++. ....+.+...+.
T Consensus 9 ~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~-Il~~l~~~l~~~ 51 (89)
T PF08542_consen 9 EEILESCLN-GDFKEARKKLYELLVEGYSASD-ILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHH-TCHHHHHHHHHHHHHTT--HHH-HHHHHHHHHHTS
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHh
Confidence 334443333 4667777777776666665433 223344444433
No 464
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=32.74 E-value=1.2e+02 Score=20.73 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHhcccCCC--cHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 37 QCFDQMPER--DYVLWTTMIDGYLRVNR---FREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 37 ~~~~~m~~~--~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
..|+++++| +...|..++.+....+. .+...++++.++. ++..+...++.-+.+
T Consensus 79 ~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~----~n~~~L~~L~~~L~~ 137 (187)
T cd04403 79 LFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPK----PNHDTLKMLFRHLCR 137 (187)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHH
Confidence 345788886 66678888776543322 2333344444443 466666666655543
No 465
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=32.49 E-value=78 Score=18.47 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHHHc
Q 038237 62 RFREALTLFQEIQTS 76 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~ 76 (181)
..++|..+.+.+.+.
T Consensus 46 ~~dkar~Lid~v~~K 60 (83)
T cd08325 46 IMDKARVLVDSVTEK 60 (83)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 466
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.21 E-value=1.7e+02 Score=20.21 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---------C-cHHHHHHHHHHHHhc----Cc-------HHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---------R-DYVLWTTMIDGYLRV----NR-------FREALTLFQEIQTS 76 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---------~-~~~~~~~li~~~~~~----~~-------~~~a~~~~~~m~~~ 76 (181)
-|...+.-+++..+..++.+++++... | ...++..+-.+|... .+ +++|.+.|++...
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~- 108 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD- 108 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh-
Confidence 377778888888777777777776652 4 223444444444332 23 4444455554444
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..|+...|..-+.... +|-+++.++.+.+
T Consensus 109 -~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 109 -EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp -H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred -cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4699999999988864 4566666665543
No 467
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=32.19 E-value=2.8e+02 Score=22.66 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNI---MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
-.+++.+..-....++-..+|+....... .-+...+...++-+...|.+.+...+-..|++.-.. -..-.+
T Consensus 211 ~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~~~~~~------lTFqEA 284 (543)
T KOG2214|consen 211 AGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMKKRLGN------LTFQEA 284 (543)
T ss_pred hhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------hhHHHH
Confidence 44566666666677777777776655433 223334556677777777776666655555543111 112334
Q ss_pred hHhcC-------------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh
Q 038237 127 YCKCT-------------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 127 ~~~~~-------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
|-+.| |+..|+++...|+--| .-+...++.+-....+.|-..+
T Consensus 285 Y~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs~pg-if~~~~Ll~Kd~t~ei~p~~~~ 352 (543)
T KOG2214|consen 285 YDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCSVPG-IFESTPLLAKDLTNEIEPFIVT 352 (543)
T ss_pred HHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhccccc-ccCccHHHHhhccCcEeeccCC
Confidence 44444 7888999888887544 4445566666655556554444
No 468
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=32.16 E-value=27 Score=20.52 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 136 WTTMIVGLAISGN--GDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 136 ~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
.|+++..+...|+ +++-.+..+.-....|.|+...|.++..
T Consensus 4 LNn~~~~~~~~G~~~l~kD~eA~~~y~~~~V~pnt~~F~S~~E 46 (82)
T PF08343_consen 4 LNNELNIYDEDGKIQLEKDKEAVRAYFKEHVNPNTVKFNSLKE 46 (82)
T ss_dssp HHHGGG---TTS---THHHHHHHHHHHHHTTGGGB---SSHHH
T ss_pred HHHHHcCCCCCCCcCchhHHHHHHHHHHHhcccceeecCCHHH
Confidence 4555555555665 5677777888888889999998887653
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.71 E-value=1.9e+02 Score=22.79 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE-----------RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
..+++..+--|++..|+++++.+.- ..+.+|--+--+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999988862 134455566667788899999999998864
No 470
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=31.57 E-value=3.1e+02 Score=22.95 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHH
Q 038237 65 EALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGL 143 (181)
Q Consensus 65 ~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~ 143 (181)
+..+.+.+. .+.|+..+......++... .|++..+...+++....+- ...+...+-..+........+ .++.+.
T Consensus 195 el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~--g~It~e~V~~llg~~~~~~if-~L~~ai 269 (598)
T PRK09111 195 VLAAHLSRIAAKEGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGA--GEVTAEAVRDMLGLADRARVI-DLFEAL 269 (598)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcC--CCcCHHHHHHHhCCCCHHHHH-HHHHHH
Confidence 334444433 3456666665554445433 4677778777777655431 223333333333322222223 445544
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 144 AISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
. .|+.++|+.+++++...|..|-.
T Consensus 270 ~-~gd~~~Al~~l~~l~~~G~~p~~ 293 (598)
T PRK09111 270 M-RGDVAAALAEFRAQYDAGADPVV 293 (598)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 4 68999999999999998888864
No 471
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=31.32 E-value=86 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.0
Q ss_pred cHHHHHHHHHHHHH
Q 038237 62 RFREALTLFQEIQT 75 (181)
Q Consensus 62 ~~~~a~~~~~~m~~ 75 (181)
..+.+.++++-+..
T Consensus 45 ~~~k~~~LLd~l~~ 58 (85)
T PF00619_consen 45 RQDKARKLLDILKR 58 (85)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33444444444444
No 472
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.22 E-value=98 Score=19.56 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=19.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 139 MIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 139 li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
+|+-+-++...++|+++.+=|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555888899999999998886
No 473
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.99 E-value=2.1e+02 Score=22.72 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=15.8
Q ss_pred HHHcCChhHHHHHHHHHHHc
Q 038237 143 LAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...|++.+|++.|+.+...
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH
Confidence 35799999999999998754
No 474
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.68 E-value=2.5e+02 Score=21.48 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=50.7
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhH
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~ 151 (181)
..+.|+..+......++.. -.|++..+...++.+... +-. .+...+-.......+...+. ++.+.. .|+..+
T Consensus 180 ~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~---it~~~v~~~~~~~~~~~if~-l~~ai~-~~~~~~ 252 (367)
T PRK14970 180 AVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKN---ITRQAVTENLNILDYDTYIN-VTDLIL-ENKIPE 252 (367)
T ss_pred HHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHhCCCCHHHHHH-HHHHHH-cCCHHH
Confidence 3456766666655555543 236777777777776643 211 11111112222222333333 555554 689999
Q ss_pred HHHHHHHHHHcCCCCC
Q 038237 152 ALDMFSQMLRASIKPD 167 (181)
Q Consensus 152 a~~~~~~m~~~~~~p~ 167 (181)
+..+++++...|..|.
T Consensus 253 a~~~~~~l~~~~~~~~ 268 (367)
T PRK14970 253 LLLAFNEILRKGFDGH 268 (367)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 9999999998888774
No 475
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=30.61 E-value=3.4e+02 Score=23.16 Aligned_cols=85 Identities=7% Similarity=0.062 Sum_probs=50.0
Q ss_pred HcCCCccHHHHHHHHHHHHccCC----cchHHHHHHHHHHc----CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHc
Q 038237 75 TSNIMGDEFTIVSILTARANLGA----LELGEWIKTYIDKN----KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAIS 146 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~ 146 (181)
..|.+.|...|..|+.++....+ .+++.++++-+++. |+.+.. . ++..-++++.-|+..
T Consensus 210 adgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~l--H-----------n~cf~WVlF~qyv~t 276 (677)
T PF05664_consen 210 ADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTL--H-----------NVCFAWVLFRQYVAT 276 (677)
T ss_pred ccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHH--H-----------HHHHHHHHHHHHHhc
Confidence 45778899999999999877543 46777777777653 333211 1 222335667777777
Q ss_pred CChhH---HHHHHHHHHHcCC-CCChhhHH
Q 038237 147 GNGDK---ALDMFSQMLRASI-KPDEVAYV 172 (181)
Q Consensus 147 ~~~~~---a~~~~~~m~~~~~-~p~~~t~~ 172 (181)
|+.+- |...+.+.....- .+....|.
T Consensus 277 ge~~LL~~a~~~L~ev~~d~~~~~~~~~y~ 306 (677)
T PF05664_consen 277 GEPDLLKAAIQQLQEVAKDAKRATKDPLYL 306 (677)
T ss_pred CCHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 76544 4444444444322 34444443
No 476
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=30.50 E-value=75 Score=16.45 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=18.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc
Q 038237 140 IVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 140 i~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|......|+++.|+++.++....
T Consensus 8 i~~~i~~g~~~~a~~~~~~~~~~ 30 (58)
T smart00668 8 IRELILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHHHHHcCCHHHHHHHHHHcCHH
Confidence 45556699999999999988654
No 477
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=30.46 E-value=73 Score=18.85 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHhcCcHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHccCCcch
Q 038237 56 GYLRVNRFREALTLFQEIQT-SNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
..-+.|+.+.|..+++.+.+ . ...-+..+++++-..|.-..
T Consensus 43 ~~~~~g~~~aa~~Ll~~L~~~r----~~~wf~~Fl~AL~~~g~~~l 84 (88)
T cd08812 43 EERNKGNIAAAEELLDRLERCD----KPGWFQAFLDALRRTGNDDL 84 (88)
T ss_pred HHhccChHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHcCCccH
Confidence 33344666666666666665 2 22234456666666655433
No 478
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.38 E-value=1.2e+02 Score=17.88 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHhcCcHHHHHHHHHHH----HHcCCCcc--HHHHH--HHHHHHHccCCcchHHHHHHHHHHc
Q 038237 57 YLRVNRFREALTLFQEI----QTSNIMGD--EFTIV--SILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 57 ~~~~~~~~~a~~~~~~m----~~~~~~p~--~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
..+.|++.+|.+.+.+. ...+..+. ...+. .+.......|+.++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667877775554444 33333221 22222 2334456778999998888887764
No 479
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.28 E-value=1.3e+02 Score=20.44 Aligned_cols=41 Identities=10% Similarity=-0.122 Sum_probs=28.3
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
+.|+.++......+...+....-++.+.++++.+++.|+..
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~~ 111 (198)
T TIGR01428 71 RLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERGYRL 111 (198)
T ss_pred HcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeE
Confidence 35666665555556666666666788889999888877654
No 480
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=30.27 E-value=4e+02 Score=23.81 Aligned_cols=132 Identities=9% Similarity=0.016 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCC----------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPER----------------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
+|-...+.++...+..|.++-+.+..+.+++. +...|-.-+.+......++++.+.+.......
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (932)
T PRK13184 686 RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTL 765 (932)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHH
Confidence 55555666666667888887776666655531 11123333555555556666666444432221
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFS 157 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 157 (181)
+ ...+..++.-+.-.++.+...++.+.+.+.-.+... +.. .-...|.+|.-..++++|-++++
T Consensus 766 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 828 (932)
T PRK13184 766 I---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEER--HDH------------LLVYEIQAHLWNRDLKKAYKLLN 828 (932)
T ss_pred H---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhh--hhh------------hhHHHHHHHHHhccHHHHHHHHH
Confidence 1 122333333333334444444444444433221111 111 11234556666888999988886
Q ss_pred HHHHc
Q 038237 158 QMLRA 162 (181)
Q Consensus 158 ~m~~~ 162 (181)
+--..
T Consensus 829 ~~~~~ 833 (932)
T PRK13184 829 RYPLD 833 (932)
T ss_pred hCChh
Confidence 65433
No 481
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.19 E-value=3.1e+02 Score=22.51 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
++....+..|+..+... +.++..+++.++... + ...+..++++....|-.+....+.+.+....+.
T Consensus 307 ~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 307 EPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred cchHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 45666777777776555 667777888877651 1 667888999999999887777777766665544
No 482
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.18 E-value=2e+02 Score=20.41 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 49 LWTTMIDGYLR--VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 49 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.|...+.|+.. .+++++|.+.+.+- .+.|+-. ..++.++...|+.+.|..+++...-.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~ 137 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP 137 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC
Confidence 45566666654 46677887777432 2223322 24777777788888888887776443
No 483
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=30.11 E-value=1e+02 Score=20.98 Aligned_cols=53 Identities=9% Similarity=0.277 Sum_probs=25.9
Q ss_pred HhcccCCC--cHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 38 CFDQMPER--DYVLWTTMIDGYLRVNR---FREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 38 ~~~~m~~~--~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.|+++++| +...|..++...-.... .....+++..+.. ++..+...++.-+.+
T Consensus 77 flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~----~n~~~L~~l~~~L~~ 134 (186)
T cd04377 77 WLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPR----ANLNTLERLIFHLVR 134 (186)
T ss_pred HHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHH
Confidence 44677765 56666666665533222 2222333333333 455555555555543
No 484
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=29.94 E-value=1.3e+02 Score=18.13 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=14.8
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHHHH
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMIDGY 57 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~ 57 (181)
...+.+++.++++.++..+..+|..+..++
T Consensus 47 ~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL 76 (94)
T cd08327 47 QTTSRRKTMKLLDILPSRGPKAFHAFLDSL 76 (94)
T ss_pred cCChHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 344445555555555555555555544444
No 485
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=29.89 E-value=66 Score=23.84 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
|..|.-.|-.---..-+++..+++++..++. .|+..|-+.+|-+++.. .++..++++.+...|+.
T Consensus 179 NvETVprL~~~VRp~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGEt--~~Ev~e~m~DLr~~gvd 243 (306)
T COG0320 179 NVETVPRLYPRVRPGATYERSLSLLERAKEL--GPDIPTKSGLMVGLGET--DEEVIEVMDDLRSAGVD 243 (306)
T ss_pred ccccchhcccccCCCCcHHHHHHHHHHHHHh--CCCcccccceeeecCCc--HHHHHHHHHHHHHcCCC
Confidence 4444444333222334789999999998886 48888888888886654 46788888888887764
No 486
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=2.4e+02 Score=21.14 Aligned_cols=122 Identities=13% Similarity=0.011 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHH---------------H-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQE---------------I-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYID 109 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~---------------m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (181)
++...+.+-.-+.+.+++++|.+-|-. | ....+.||...-.+++..++-.++. .|...+....
T Consensus 126 ~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~-~A~~s~t~yt 204 (312)
T KOG3024|consen 126 HPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDS-SAARSFTTYT 204 (312)
T ss_pred CHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchH-HHHHHHHHHH
Confidence 555566666667777777777664421 1 1123567877777777777654443 3444333332
Q ss_pred H---------------cCC---C----cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHH-HHHHHHHHHc--CC
Q 038237 110 K---------------NKV---K----NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA-LDMFSQMLRA--SI 164 (181)
Q Consensus 110 ~---------------~~~---~----~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~--~~ 164 (181)
+ .|. . |...-...|+. -+..++...|+.|-.-|-..=+.+.+ .+.++++-+. |+
T Consensus 205 ~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl~~Ll~-t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~IgelyFgi 283 (312)
T KOG3024|consen 205 SMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFLHFLLE-TIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDRIGELYFGI 283 (312)
T ss_pred HhhccccccchhhcccccccCCCccccchHHHHHHHHH-HHhccccHHHHHHHHHccchhhhhHHHHHHHHHHHHHHcCC
Confidence 2 111 1 12222222222 23445888899998888654444444 4556666555 77
Q ss_pred CCChh
Q 038237 165 KPDEV 169 (181)
Q Consensus 165 ~p~~~ 169 (181)
+|...
T Consensus 284 ~~~~~ 288 (312)
T KOG3024|consen 284 RPKQP 288 (312)
T ss_pred CCCcc
Confidence 77554
No 487
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=29.46 E-value=3e+02 Score=22.04 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+.+... .+.|+..+......++... .|++..+...++.+.... ....+-..+-...........| .++.+
T Consensus 183 ~el~~~L~~~~~~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~--~~~It~~~V~~l~~~~~~~~vf-~L~~a 257 (451)
T PRK06305 183 ETIIDKLALIAKQEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLF--PKSLDPDSVAKALGLLSQDSLY-TLDEA 257 (451)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhc--cCCcCHHHHHHHHCCCCHHHHH-HHHHH
Confidence 3444444443 4457666665555554443 477888888877765321 1112222222222222222333 34444
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
. ..++.++|+.+++++...|..|-
T Consensus 258 i-~~~d~~~al~~l~~L~~~g~~~~ 281 (451)
T PRK06305 258 I-TTQNYAQALEPVTDAMNSGVAPA 281 (451)
T ss_pred H-HcCCHHHHHHHHHHHHHcCcCHH
Confidence 4 47899999999999999888763
No 488
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=2.1e+02 Score=22.79 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHhccCCHHHHHHHhcccCC-------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH-HH--HHHHHc
Q 038237 25 GYINREQVDIARQCFDQMPE-------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV-SI--LTARAN 94 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l--~~~~~~ 94 (181)
-..+.|....|.+.+.+... ++...|-..-....+.|+..+|+.--++..+- |..-.- .+ -.++..
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLA 333 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHH
Confidence 35588999999999999975 35556777777788889999998877776652 332221 22 233345
Q ss_pred cCCcchHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKN 111 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~ 111 (181)
.+.|++|.+-++...+.
T Consensus 334 le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 57788887777776665
No 489
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.19 E-value=2.4e+02 Score=20.86 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=30.3
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHc---CCCcchHHHHHHHHHhHhcC
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKN---KVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~ 131 (181)
|-..|-.+.-..|+..++..++.--+. .-.-+..+...||.+|-...
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD 242 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGD 242 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCC
Confidence 444555555666777788877774443 22346778888888886643
No 490
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.79 E-value=90 Score=23.70 Aligned_cols=24 Identities=4% Similarity=0.066 Sum_probs=15.5
Q ss_pred HHHHHHHccCCcchHHHHHHHHHH
Q 038237 87 SILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
.+++.|.+.|.+++|.++....++
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHH
Confidence 556667777777776666665554
No 491
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=28.68 E-value=2.7e+02 Score=21.39 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHH
Q 038237 24 SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNR-FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
+.+++.++-+.+..+-+....--.....+|..++=...- ..-+..+++..... ||......++++.+.........
T Consensus 174 D~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~ 250 (340)
T PF12069_consen 174 DICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVA 250 (340)
T ss_pred HHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHH
Confidence 334444444444444333333223333344333333322 22333444444444 78888888888888766666666
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhHhc----CchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 103 WIKTYIDKNKVKNDIFAGNALIDMYCKC----TVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
..+..+..+....+..+ |+..-+|. .|...-..++..++..++..---.+|.++.
T Consensus 251 ~~i~~~L~~~~~~~~e~---Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 251 ILIDALLQSPRLCHPEV---LIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred HHHHHHhcCcccCChHH---HHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 65666666543333332 22222222 155566666666666665433344444443
No 492
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.50 E-value=1.2e+02 Score=17.13 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 43 PERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 43 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
..++...-...+....+.++. ++...+.++.. .+|..+-...+.++.+.|+. ++...+.++.+.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~~-~~~~~L~~~l~~ 73 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGDP-EAIPALIELLK---DEDPMVRRAAARALGRIGDP-EAIPALIKLLQD 73 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHT---SSSHHHHHHHHHHHHCCHHH-HTHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC
Confidence 356666666677777766654 55555555553 37778888888888887753 344444444443
No 493
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=28.49 E-value=1.1e+02 Score=16.65 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=22.8
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+......+...+ ....+...++|+-|.++|+-|-
T Consensus 29 np~lR~~l~~~~--~~~~~~~~~l~~~m~~kGwY~~ 62 (64)
T PF07875_consen 29 NPELRQILQQIL--NECQQMQYELFNYMNQKGWYQP 62 (64)
T ss_pred CHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCcCC
Confidence 344444444444 3356778999999999998653
No 494
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=28.35 E-value=1.3e+02 Score=21.02 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHhcccCCC--cHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 37 QCFDQMPER--DYVLWTTMIDGYLRVNRFRE----ALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 37 ~~~~~m~~~--~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
..|+++++| +...|..++.+. +..+.++ ...++..++. ++..+...++.-+.+
T Consensus 95 ~fLReLPePLi~~~~y~~~i~~~-~~~~~~~ri~~l~~li~~LP~----~n~~~L~~L~~~L~~ 153 (203)
T cd04374 95 TYLRNLPEPLMTYELHNDFINAA-KSENLESRVNAIHSLVHKLPE----KNREMLELLIKHLTN 153 (203)
T ss_pred HHHHcCCCCcCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHH
Confidence 455778876 667788887764 3333333 3334444443 466666666655543
No 495
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.24 E-value=88 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHH
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (181)
..+++|+++-++-.+.|.+.++ |-.-.|.+++.++.++|+.||..|-
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SI-------------gl~GNaaei~~~l~~r~~~pD~vtD 263 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISI-------------GLLGNAAEILPELLRRGIRPDLVTD 263 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEE-------------EEeccHHHHHHHHHHcCCCCceecc
Confidence 4567777777666666544322 2334566777777777777776653
No 496
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.04 E-value=3.5e+02 Score=22.40 Aligned_cols=61 Identities=7% Similarity=0.113 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCC--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPER--DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (181)
.|..++.. .+.-+.++-.++++++... ....+..++++...+|-...+.-+.+.+....+.
T Consensus 348 ~f~~Lv~~-lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~ 410 (618)
T PF01347_consen 348 KFSRLVRL-LRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT 410 (618)
T ss_dssp HHHHHHHH-HTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 35555555 4566777888888888876 7888999999999999877766666666665454
No 497
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=27.95 E-value=69 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh
Q 038237 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
...++++|....++-++.+...+...... |.++|+++.++|+.||..|
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GN-----------------------------aadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGN-----------------------------AAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeecc-----------------------------HHHHHHHHHHcCCCCCCcC
No 498
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=27.84 E-value=2e+02 Score=19.64 Aligned_cols=53 Identities=8% Similarity=0.182 Sum_probs=28.0
Q ss_pred HhcccCCC--cHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 38 CFDQMPER--DYVLWTTMIDGYLRVNRFR---EALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 38 ~~~~m~~~--~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.|+++++| +...|..++.+.....+-+ ....++..+.. ++..+...++.-+.+
T Consensus 77 fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~----~n~~~L~~l~~~L~~ 134 (186)
T cd04406 77 WLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSR----THLNTLERLIFHLVR 134 (186)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHH
Confidence 45778876 7777888887764433222 22233333333 344455555544443
No 499
>PF14162 YozD: YozD-like protein
Probab=27.64 E-value=1e+02 Score=16.22 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHcCCCCCh--------hhHHHHHhhh
Q 038237 150 DKALDMFSQMLRASIKPDE--------VAYVGVLSAR 178 (181)
Q Consensus 150 ~~a~~~~~~m~~~~~~p~~--------~t~~~li~~~ 178 (181)
+-|.-.|+++.++|..|+. +||-.|+.-|
T Consensus 12 EIAefFy~eL~kRGyvP~e~El~eiADItFeYll~K~ 48 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEEELEEIADITFEYLLEKC 48 (57)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999975 4555555443
No 500
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=27.56 E-value=28 Score=18.24 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=17.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCh
Q 038237 146 SGNGDKALDMFSQMLRAS-IKPDE 168 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~-~~p~~ 168 (181)
.=+++.|...|.++...| ++|++
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 558899999999999886 66654
Done!