Query 038237
Match_columns 181
No_of_seqs 173 out of 1366
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 15:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.1E-36 7.2E-41 233.5 17.4 177 4-180 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.7E-31 3.3E-35 201.9 15.7 149 33-181 7-188 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 6.9E-26 2.3E-30 182.5 10.3 114 16-129 127-248 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.8E-25 9.6E-30 178.9 10.3 119 46-180 126-248 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 3.8E-17 1.3E-21 127.9 18.2 177 2-180 289-528 (597)
6 2xpi_A Anaphase-promoting comp 99.7 2.3E-16 7.8E-21 123.5 16.1 175 2-179 356-561 (597)
7 1b89_A Protein (clathrin heavy 99.4 3.4E-14 1.2E-18 107.0 3.2 161 1-180 19-189 (449)
8 1w3b_A UDP-N-acetylglucosamine 99.4 6.9E-11 2.4E-15 87.9 18.6 57 19-75 138-197 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.4 3.5E-11 1.2E-15 89.5 16.7 158 2-161 152-367 (388)
10 2ho1_A Type 4 fimbrial biogene 99.4 7.4E-11 2.5E-15 82.5 16.7 170 2-174 54-248 (252)
11 2y4t_A DNAJ homolog subfamily 99.3 3.9E-11 1.3E-15 90.7 14.8 165 2-171 43-247 (450)
12 1b89_A Protein (clathrin heavy 99.3 1.2E-11 4E-16 93.3 11.1 158 2-178 78-251 (449)
13 2y4t_A DNAJ homolog subfamily 99.3 1.2E-10 4.1E-15 88.0 16.7 158 2-161 77-285 (450)
14 3mkr_A Coatomer subunit epsilo 99.3 5.5E-10 1.9E-14 80.6 17.1 92 14-111 63-159 (291)
15 4eqf_A PEX5-related protein; a 99.3 5.5E-11 1.9E-15 87.7 11.4 174 2-178 82-291 (365)
16 2q7f_A YRRB protein; TPR, prot 99.2 4.2E-10 1.4E-14 78.0 14.6 159 2-162 40-222 (243)
17 2vq2_A PILW, putative fimbrial 99.2 9E-10 3.1E-14 75.3 15.8 125 3-128 26-158 (225)
18 2vq2_A PILW, putative fimbrial 99.2 2E-09 7E-14 73.5 16.5 160 15-175 7-189 (225)
19 3mkr_A Coatomer subunit epsilo 99.2 3.1E-09 1.1E-13 76.6 17.6 156 2-162 82-264 (291)
20 4eqf_A PEX5-related protein; a 99.2 2.4E-10 8.4E-15 84.2 11.2 176 2-178 116-337 (365)
21 3hym_B Cell division cycle pro 99.2 1.5E-09 5.2E-14 78.4 15.1 158 3-161 109-298 (330)
22 1fch_A Peroxisomal targeting s 99.2 6.5E-10 2.2E-14 81.8 13.0 94 17-111 65-161 (368)
23 2ho1_A Type 4 fimbrial biogene 99.2 3.8E-09 1.3E-13 73.7 16.2 160 16-177 37-218 (252)
24 3cv0_A Peroxisome targeting si 99.2 2.4E-09 8.3E-14 77.2 15.4 160 2-162 38-269 (327)
25 2pl2_A Hypothetical conserved 99.2 7.2E-10 2.5E-14 76.4 11.9 153 3-176 23-193 (217)
26 3as5_A MAMA; tetratricopeptide 99.2 1.6E-08 5.3E-13 66.8 18.0 142 19-162 11-173 (186)
27 3hym_B Cell division cycle pro 99.1 1.8E-09 6E-14 78.0 14.2 175 2-178 39-246 (330)
28 3uq3_A Heat shock protein STI1 99.1 1.2E-09 4.2E-14 76.1 12.9 174 2-176 22-254 (258)
29 2gw1_A Mitochondrial precursor 99.1 3.2E-09 1.1E-13 81.2 16.0 92 83-177 238-347 (514)
30 3vtx_A MAMA; tetratricopeptide 99.1 8.8E-09 3E-13 68.7 16.3 151 15-169 4-175 (184)
31 2fo7_A Synthetic consensus TPR 99.1 6.4E-09 2.2E-13 65.0 14.0 128 17-162 2-132 (136)
32 2pl2_A Hypothetical conserved 99.1 1.9E-08 6.6E-13 69.2 16.9 145 14-178 3-161 (217)
33 1fch_A Peroxisomal targeting s 99.1 1.6E-09 5.6E-14 79.6 11.7 160 2-162 81-314 (368)
34 2q7f_A YRRB protein; TPR, prot 99.1 7.1E-09 2.4E-13 71.7 13.9 162 14-178 21-203 (243)
35 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.6E-08 5.4E-13 71.2 15.7 159 2-162 22-244 (275)
36 2h6f_A Protein farnesyltransfe 99.0 3E-08 1E-12 74.2 15.1 173 2-178 114-319 (382)
37 3uq3_A Heat shock protein STI1 99.0 4E-08 1.4E-12 68.4 14.9 161 16-177 5-216 (258)
38 3fp2_A TPR repeat-containing p 99.0 1.7E-08 5.8E-13 77.8 14.2 159 2-162 219-407 (537)
39 3ieg_A DNAJ homolog subfamily 99.0 2.5E-08 8.4E-13 72.6 14.3 158 2-162 20-217 (359)
40 2gw1_A Mitochondrial precursor 99.0 1.1E-08 3.7E-13 78.3 12.8 145 16-161 304-477 (514)
41 3ieg_A DNAJ homolog subfamily 99.0 1.2E-07 4E-12 69.0 17.7 170 2-174 137-346 (359)
42 4gyw_A UDP-N-acetylglucosamine 99.0 3.4E-08 1.2E-12 79.6 15.5 143 16-161 9-173 (723)
43 3fp2_A TPR repeat-containing p 98.9 3.1E-08 1.1E-12 76.3 13.9 107 3-110 294-406 (537)
44 3edt_B KLC 2, kinesin light ch 98.9 2.5E-08 8.5E-13 70.2 12.0 96 16-111 43-156 (283)
45 3cv0_A Peroxisome targeting si 98.9 2E-08 6.8E-13 72.4 11.3 153 2-160 155-313 (327)
46 4abn_A Tetratricopeptide repea 98.9 6.3E-08 2.2E-12 74.4 14.6 157 3-162 86-287 (474)
47 2ond_A Cleavage stimulation fa 98.9 2E-07 6.8E-12 67.4 15.4 171 3-176 34-249 (308)
48 1ouv_A Conserved hypothetical 98.9 6.9E-07 2.4E-11 63.1 17.7 156 2-163 23-216 (273)
49 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.3E-07 1.8E-11 61.2 16.1 143 18-162 8-150 (213)
50 3nf1_A KLC 1, kinesin light ch 98.8 7.4E-08 2.5E-12 68.8 11.1 146 16-161 111-306 (311)
51 3u4t_A TPR repeat-containing p 98.8 6.2E-07 2.1E-11 63.0 15.2 108 3-111 21-137 (272)
52 1ouv_A Conserved hypothetical 98.8 2.2E-06 7.4E-11 60.6 18.0 143 15-163 5-180 (273)
53 4abn_A Tetratricopeptide repea 98.8 3E-08 1E-12 76.2 8.8 157 2-159 120-318 (474)
54 2vsy_A XCC0866; transferase, g 98.8 3.1E-07 1.1E-11 71.8 14.7 144 1-162 5-157 (568)
55 3as5_A MAMA; tetratricopeptide 98.7 4.7E-07 1.6E-11 59.5 13.1 129 2-132 25-159 (186)
56 4i17_A Hypothetical protein; T 98.7 1.6E-06 5.3E-11 59.6 16.2 141 14-167 5-149 (228)
57 2ond_A Cleavage stimulation fa 98.7 9.5E-07 3.3E-11 63.8 15.5 159 2-162 81-270 (308)
58 2fo7_A Synthetic consensus TPR 98.7 1.3E-07 4.3E-12 58.9 9.5 110 2-112 18-133 (136)
59 3u4t_A TPR repeat-containing p 98.7 1.5E-07 5E-12 66.3 10.6 144 17-162 4-171 (272)
60 3nf1_A KLC 1, kinesin light ch 98.7 5.8E-07 2E-11 64.1 13.8 146 16-161 27-223 (311)
61 3urz_A Uncharacterized protein 98.7 1.2E-06 4E-11 59.8 14.7 151 20-174 8-196 (208)
62 2h6f_A Protein farnesyltransfe 98.7 2E-06 7E-11 64.3 16.7 157 16-176 97-282 (382)
63 3vtx_A MAMA; tetratricopeptide 98.7 3E-06 1E-10 56.2 15.8 130 46-178 4-151 (184)
64 1xnf_A Lipoprotein NLPI; TPR, 98.6 2.1E-06 7.1E-11 60.3 14.4 134 27-162 16-173 (275)
65 1na0_A Designed protein CTPR3; 98.6 1.1E-06 3.8E-11 53.9 11.4 109 16-126 9-120 (125)
66 2r5s_A Uncharacterized protein 98.6 3E-06 1E-10 56.1 13.8 141 2-161 23-172 (176)
67 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.6E-06 9E-11 57.7 12.9 114 2-115 23-154 (213)
68 4ga2_A E3 SUMO-protein ligase 98.6 1.5E-06 5.3E-11 56.1 11.0 124 2-128 14-145 (150)
69 3ulq_A Response regulator aspa 98.5 1.7E-06 5.8E-11 64.2 12.2 160 3-162 168-368 (383)
70 4i17_A Hypothetical protein; T 98.5 2.1E-06 7.3E-11 58.9 11.5 167 2-175 24-220 (228)
71 2pzi_A Probable serine/threoni 98.5 1E-06 3.5E-11 70.6 10.6 141 2-161 408-562 (681)
72 1a17_A Serine/threonine protei 98.5 5.1E-06 1.7E-10 53.7 12.1 130 16-161 13-145 (166)
73 2ooe_A Cleavage stimulation fa 98.5 1.1E-05 3.8E-10 62.5 15.8 157 4-163 257-455 (530)
74 4ga2_A E3 SUMO-protein ligase 98.5 3.2E-06 1.1E-10 54.6 10.8 125 24-168 5-133 (150)
75 4gco_A Protein STI-1; structur 98.5 1.9E-05 6.6E-10 49.4 13.8 103 48-170 14-116 (126)
76 3qou_A Protein YBBN; thioredox 98.4 6.5E-06 2.2E-10 59.0 12.9 129 15-162 116-248 (287)
77 1na0_A Designed protein CTPR3; 98.4 2E-05 6.9E-10 48.0 13.5 99 46-162 8-106 (125)
78 3mv2_B Coatomer subunit epsilo 98.4 1.1E-05 3.7E-10 58.5 13.6 139 4-162 85-240 (310)
79 1p5q_A FKBP52, FK506-binding p 98.4 8.6E-07 2.9E-11 65.1 8.0 127 15-159 146-291 (336)
80 3qky_A Outer membrane assembly 98.4 3.4E-05 1.2E-09 54.0 16.1 148 14-162 13-177 (261)
81 2ooe_A Cleavage stimulation fa 98.4 1.5E-05 5.2E-10 61.8 15.3 157 3-162 304-492 (530)
82 1qqe_A Vesicular transport pro 98.4 2.3E-06 7.8E-11 61.4 9.9 136 16-161 77-227 (292)
83 2lni_A Stress-induced-phosphop 98.4 6.7E-06 2.3E-10 51.0 11.0 111 15-127 15-128 (133)
84 3gw4_A Uncharacterized protein 98.4 1.1E-05 3.8E-10 53.9 12.8 149 2-162 9-176 (203)
85 4gyw_A UDP-N-acetylglucosamine 98.4 1.9E-05 6.6E-10 63.7 16.1 127 46-177 8-154 (723)
86 1xi4_A Clathrin heavy chain; a 98.4 2.7E-05 9.1E-10 66.4 16.9 157 3-178 1094-1260(1630)
87 3q15_A PSP28, response regulat 98.4 1.4E-05 4.8E-10 59.2 14.1 159 3-161 166-364 (378)
88 2e2e_A Formate-dependent nitri 98.4 2.6E-06 8.9E-11 56.2 9.1 118 27-162 21-144 (177)
89 3edt_B KLC 2, kinesin light ch 98.4 1.1E-05 3.6E-10 56.6 12.7 136 27-162 12-198 (283)
90 3qky_A Outer membrane assembly 98.4 4.9E-06 1.7E-10 58.4 10.9 153 2-162 32-224 (261)
91 3mv2_B Coatomer subunit epsilo 98.4 2.5E-06 8.7E-11 61.7 9.4 141 2-162 117-282 (310)
92 2vyi_A SGTA protein; chaperone 98.4 1.1E-05 3.7E-10 49.7 11.3 112 15-128 11-125 (131)
93 2kck_A TPR repeat; tetratricop 98.4 7.4E-06 2.5E-10 49.1 10.0 99 15-114 5-109 (112)
94 4gco_A Protein STI-1; structur 98.4 1.3E-05 4.6E-10 50.1 11.4 96 17-113 14-112 (126)
95 2r5s_A Uncharacterized protein 98.4 3.8E-05 1.3E-09 50.6 14.1 142 18-178 8-154 (176)
96 3gyz_A Chaperone protein IPGC; 98.3 4E-06 1.4E-10 54.4 8.8 99 15-114 35-136 (151)
97 3gyz_A Chaperone protein IPGC; 98.3 2E-05 6.9E-10 51.1 12.0 127 18-168 11-137 (151)
98 1xi4_A Clathrin heavy chain; a 98.3 3E-05 1E-09 66.1 15.6 144 2-162 1122-1309(1630)
99 4a1s_A PINS, partner of inscut 98.3 3.8E-06 1.3E-10 62.6 9.1 144 18-161 88-291 (411)
100 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-05 5.8E-10 51.1 10.8 93 18-111 23-118 (148)
101 1elw_A TPR1-domain of HOP; HOP 98.3 2.7E-05 9.2E-10 47.0 11.1 97 16-113 4-103 (118)
102 3ro2_A PINS homolog, G-protein 98.3 6.1E-06 2.1E-10 59.1 9.3 160 2-161 22-251 (338)
103 3u3w_A Transcriptional activat 98.3 0.00014 4.7E-09 52.0 16.2 139 22-160 81-264 (293)
104 2vsy_A XCC0866; transferase, g 98.3 3.1E-05 1.1E-09 60.6 13.7 130 29-177 2-134 (568)
105 4gcn_A Protein STI-1; structur 98.3 3.3E-05 1.1E-09 48.3 11.4 115 47-174 8-122 (127)
106 2dba_A Smooth muscle cell asso 98.2 6.8E-05 2.3E-09 47.3 13.0 97 15-112 27-129 (148)
107 4a1s_A PINS, partner of inscut 98.2 9.4E-06 3.2E-10 60.4 10.1 147 16-162 126-332 (411)
108 3rjv_A Putative SEL1 repeat pr 98.2 5.2E-05 1.8E-09 51.7 13.0 108 2-113 3-120 (212)
109 2vyi_A SGTA protein; chaperone 98.2 0.00013 4.3E-09 44.7 13.5 113 46-177 11-123 (131)
110 3upv_A Heat shock protein STI1 98.2 8.8E-05 3E-09 45.8 12.7 62 49-111 6-67 (126)
111 2kck_A TPR repeat; tetratricop 98.2 6.4E-05 2.2E-09 44.9 11.7 101 46-163 5-107 (112)
112 1elw_A TPR1-domain of HOP; HOP 98.2 0.00019 6.6E-09 43.0 13.9 99 46-162 3-101 (118)
113 2yhc_A BAMD, UPF0169 lipoprote 98.2 3.5E-05 1.2E-09 52.9 11.4 145 2-162 21-213 (225)
114 3q15_A PSP28, response regulat 98.2 2.4E-05 8.4E-10 57.9 11.3 131 17-162 142-290 (378)
115 3sf4_A G-protein-signaling mod 98.2 1.2E-05 4E-10 59.4 9.5 146 16-161 87-295 (406)
116 3q49_B STIP1 homology and U bo 98.2 0.00012 4E-09 45.7 13.0 95 15-110 8-105 (137)
117 2e2e_A Formate-dependent nitri 98.2 1.3E-05 4.3E-10 52.8 8.7 111 2-113 27-146 (177)
118 2xcb_A PCRH, regulatory protei 98.2 7.9E-05 2.7E-09 47.3 12.2 92 19-111 21-115 (142)
119 2lni_A Stress-induced-phosphop 98.2 7E-05 2.4E-09 46.2 11.8 100 45-162 14-113 (133)
120 4g1t_A Interferon-induced prot 98.2 1E-05 3.5E-10 61.4 9.2 41 132-172 429-470 (472)
121 3q49_B STIP1 homology and U bo 98.2 3.3E-05 1.1E-09 48.3 10.2 86 44-131 6-91 (137)
122 3ro2_A PINS homolog, G-protein 98.2 1.2E-05 4.1E-10 57.6 9.1 145 18-162 125-332 (338)
123 4g1t_A Interferon-induced prot 98.2 0.00031 1.1E-08 53.1 17.4 145 15-162 93-276 (472)
124 2vgx_A Chaperone SYCD; alterna 98.2 5E-05 1.7E-09 48.8 11.2 85 46-132 20-104 (148)
125 3sz7_A HSC70 cochaperone (SGT) 98.2 5.5E-05 1.9E-09 49.2 11.6 97 15-112 10-109 (164)
126 3upv_A Heat shock protein STI1 98.2 4.3E-05 1.5E-09 47.3 10.6 95 17-112 5-102 (126)
127 3ulq_A Response regulator aspa 98.2 3.2E-05 1.1E-09 57.3 11.6 129 17-161 144-292 (383)
128 3sf4_A G-protein-signaling mod 98.2 1.8E-05 6.1E-10 58.5 10.2 161 2-162 26-256 (406)
129 3qou_A Protein YBBN; thioredox 98.2 8.9E-05 3E-09 53.0 13.4 112 33-162 103-214 (287)
130 1elr_A TPR2A-domain of HOP; HO 98.2 7.8E-05 2.7E-09 45.8 11.6 114 47-175 4-119 (131)
131 2fbn_A 70 kDa peptidylprolyl i 98.1 5.9E-06 2E-10 55.6 6.7 109 16-126 38-165 (198)
132 3sz7_A HSC70 cochaperone (SGT) 98.1 0.00016 5.6E-09 46.9 13.5 99 46-162 10-108 (164)
133 4f3v_A ESX-1 secretion system 98.1 0.00019 6.6E-09 51.3 14.1 139 19-174 105-247 (282)
134 2xm6_A Protein corresponding t 98.1 0.00055 1.9E-08 52.4 17.8 155 3-163 205-397 (490)
135 1qqe_A Vesicular transport pro 98.1 5.6E-05 1.9E-09 54.1 11.5 134 18-163 39-188 (292)
136 2xcb_A PCRH, regulatory protei 98.1 3.1E-05 1.1E-09 49.2 9.1 93 38-132 6-101 (142)
137 3ro3_A PINS homolog, G-protein 98.1 6.7E-05 2.3E-09 47.7 10.6 134 17-162 10-158 (164)
138 4f3v_A ESX-1 secretion system 98.1 0.0001 3.5E-09 52.6 11.9 121 2-124 119-248 (282)
139 2ifu_A Gamma-SNAP; membrane fu 98.1 2.8E-05 9.6E-10 56.1 9.2 132 17-160 77-222 (307)
140 1elr_A TPR2A-domain of HOP; HO 98.1 6.1E-05 2.1E-09 46.3 9.7 104 17-122 5-117 (131)
141 2fbn_A 70 kDa peptidylprolyl i 98.1 6.3E-05 2.1E-09 50.5 10.4 127 19-162 7-151 (198)
142 3k9i_A BH0479 protein; putativ 98.0 1.3E-05 4.4E-10 49.2 6.3 86 60-162 3-90 (117)
143 2dba_A Smooth muscle cell asso 98.0 0.00055 1.9E-08 43.0 13.8 99 45-162 26-128 (148)
144 3gw4_A Uncharacterized protein 98.0 0.00013 4.6E-09 48.5 11.3 93 18-110 68-175 (203)
145 3rjv_A Putative SEL1 repeat pr 98.0 0.00014 4.7E-09 49.6 11.2 150 2-166 35-201 (212)
146 4gcn_A Protein STI-1; structur 98.0 5E-05 1.7E-09 47.5 8.3 102 18-121 10-120 (127)
147 2xm6_A Protein corresponding t 98.0 0.00067 2.3E-08 52.0 16.1 16 146-161 272-287 (490)
148 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.00046 1.6E-08 47.3 13.1 144 16-162 4-176 (225)
149 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 2.2E-05 7.5E-10 60.0 6.7 111 16-128 268-396 (457)
150 1a17_A Serine/threonine protei 97.9 0.0006 2.1E-08 43.7 12.5 99 46-162 12-110 (166)
151 3dra_A Protein farnesyltransfe 97.9 0.0011 3.9E-08 47.9 14.9 159 2-162 86-287 (306)
152 1hxi_A PEX5, peroxisome target 97.9 0.00023 8E-09 44.0 9.9 92 52-161 22-113 (121)
153 1wao_1 Serine/threonine protei 97.9 4.1E-05 1.4E-09 58.9 7.6 119 23-157 13-134 (477)
154 1hxi_A PEX5, peroxisome target 97.9 7.5E-05 2.6E-09 46.2 7.4 93 18-111 19-114 (121)
155 4e6h_A MRNA 3'-END-processing 97.9 0.00091 3.1E-08 53.7 15.2 172 2-177 360-583 (679)
156 2pzi_A Probable serine/threoni 97.9 0.00017 6E-09 57.8 11.2 129 27-176 402-542 (681)
157 3k9i_A BH0479 protein; putativ 97.9 7.8E-05 2.7E-09 45.6 7.3 99 28-127 2-107 (117)
158 2qfc_A PLCR protein; TPR, HTH, 97.9 0.002 7E-08 45.8 15.7 140 21-160 80-264 (293)
159 3urz_A Uncharacterized protein 97.8 0.0007 2.4E-08 45.8 12.6 92 52-162 9-117 (208)
160 2xev_A YBGF; tetratricopeptide 97.8 0.0013 4.6E-08 40.3 12.9 54 56-111 11-68 (129)
161 2xev_A YBGF; tetratricopeptide 97.8 0.0002 7E-09 44.1 9.0 92 19-112 5-106 (129)
162 3n71_A Histone lysine methyltr 97.8 0.00017 5.8E-09 55.7 9.7 123 25-162 318-464 (490)
163 1p5q_A FKBP52, FK506-binding p 97.8 0.001 3.5E-08 48.6 13.5 100 46-162 146-259 (336)
164 3rkv_A Putative peptidylprolyl 97.8 0.00086 2.9E-08 43.3 11.5 97 49-162 13-126 (162)
165 2c2l_A CHIP, carboxy terminus 97.7 0.001 3.5E-08 47.3 12.5 96 15-111 3-101 (281)
166 1hz4_A MALT regulatory protein 97.7 0.0022 7.5E-08 47.0 14.5 143 19-161 96-281 (373)
167 1hz4_A MALT regulatory protein 97.7 0.0009 3.1E-08 49.1 12.2 144 18-161 137-321 (373)
168 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00023 7.8E-09 51.3 8.6 133 18-162 38-184 (307)
169 2c2l_A CHIP, carboxy terminus 97.7 0.00049 1.7E-08 49.0 9.8 75 2-76 21-101 (281)
170 1ihg_A Cyclophilin 40; ppiase 97.6 0.00072 2.4E-08 50.2 10.4 105 18-124 225-348 (370)
171 3rkv_A Putative peptidylprolyl 97.6 0.0012 4E-08 42.6 10.2 95 17-112 12-127 (162)
172 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00025 8.5E-09 52.0 6.8 129 17-162 180-328 (338)
173 3u3w_A Transcriptional activat 97.5 0.012 4.1E-07 41.8 16.6 143 14-161 44-224 (293)
174 2hr2_A Hypothetical protein; a 97.4 0.006 2.1E-07 39.7 11.8 107 49-172 13-146 (159)
175 3e4b_A ALGK; tetratricopeptide 97.4 0.02 6.7E-07 43.6 16.6 154 4-164 164-353 (452)
176 2kat_A Uncharacterized protein 97.4 0.00057 1.9E-08 41.4 6.5 72 3-74 3-80 (115)
177 1na3_A Designed protein CTPR2; 97.4 0.0041 1.4E-07 35.4 9.9 65 47-112 9-73 (91)
178 2l6j_A TPR repeat-containing p 97.4 0.00083 2.8E-08 40.0 7.0 87 15-103 3-99 (111)
179 1wao_1 Serine/threonine protei 97.4 0.0002 6.8E-09 55.1 4.7 104 2-106 23-134 (477)
180 1ihg_A Cyclophilin 40; ppiase 97.4 0.0046 1.6E-07 45.9 12.0 99 47-162 223-336 (370)
181 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0062 2.1E-07 46.5 12.7 98 46-162 267-380 (457)
182 2hr2_A Hypothetical protein; a 97.3 0.0012 4E-08 43.0 7.4 93 18-110 13-130 (159)
183 2qfc_A PLCR protein; TPR, HTH, 97.3 0.00095 3.2E-08 47.6 7.5 143 17-159 116-283 (293)
184 3q7a_A Farnesyltransferase alp 97.3 0.028 9.7E-07 41.4 15.1 158 3-162 107-331 (349)
185 4e6h_A MRNA 3'-END-processing 97.2 0.0036 1.2E-07 50.3 10.8 149 15-163 342-534 (679)
186 4b4t_Q 26S proteasome regulato 97.2 0.0043 1.5E-07 46.3 10.6 131 19-162 58-204 (434)
187 3ma5_A Tetratricopeptide repea 97.2 0.0028 9.5E-08 37.5 7.6 63 47-110 7-69 (100)
188 3dra_A Protein farnesyltransfe 97.2 0.03 1E-06 40.5 14.1 175 2-178 50-268 (306)
189 1na3_A Designed protein CTPR2; 97.1 0.0036 1.2E-07 35.6 7.7 78 15-93 8-88 (91)
190 3ro3_A PINS homolog, G-protein 97.1 0.0075 2.6E-07 37.9 9.7 103 48-162 10-118 (164)
191 3ma5_A Tetratricopeptide repea 97.1 0.0019 6.4E-08 38.2 6.1 61 15-75 6-69 (100)
192 3e4b_A ALGK; tetratricopeptide 97.1 0.054 1.8E-06 41.1 15.5 137 18-160 143-314 (452)
193 2kat_A Uncharacterized protein 97.1 0.0033 1.1E-07 37.9 7.2 76 35-111 4-82 (115)
194 3qww_A SET and MYND domain-con 97.0 0.0057 1.9E-07 46.5 9.4 88 59-161 310-410 (433)
195 3qwp_A SET and MYND domain-con 97.0 0.0098 3.4E-07 45.1 10.7 95 52-161 292-399 (429)
196 2l6j_A TPR repeat-containing p 96.9 0.016 5.4E-07 34.1 9.5 67 46-113 3-69 (111)
197 2if4_A ATFKBP42; FKBP-like, al 96.9 0.0095 3.3E-07 43.5 9.9 98 46-162 178-293 (338)
198 3n71_A Histone lysine methyltr 96.9 0.003 1E-07 48.8 7.4 94 18-111 353-464 (490)
199 3qwp_A SET and MYND domain-con 96.9 0.0053 1.8E-07 46.6 8.6 89 22-110 293-399 (429)
200 1dce_A Protein (RAB geranylger 96.9 0.018 6E-07 45.3 11.4 169 2-175 46-233 (567)
201 3qww_A SET and MYND domain-con 96.8 0.0034 1.2E-07 47.7 7.1 83 28-110 310-410 (433)
202 1klx_A Cysteine rich protein B 96.7 0.011 3.7E-07 37.2 7.5 112 29-164 8-128 (138)
203 1klx_A Cysteine rich protein B 96.6 0.018 6.1E-07 36.2 8.3 108 2-114 12-129 (138)
204 3dss_A Geranylgeranyl transfer 96.6 0.1 3.6E-06 38.1 13.2 166 2-172 47-274 (331)
205 3q7a_A Farnesyltransferase alp 96.4 0.098 3.4E-06 38.5 12.1 152 3-173 72-247 (349)
206 1zu2_A Mitochondrial import re 96.3 0.016 5.6E-07 37.6 6.6 113 58-179 13-135 (158)
207 4b4t_Q 26S proteasome regulato 96.0 0.072 2.5E-06 39.6 9.8 92 20-111 99-204 (434)
208 3mkq_A Coatomer beta'-subunit; 95.9 0.14 4.8E-06 41.4 12.0 125 19-160 632-763 (814)
209 3mkq_A Coatomer beta'-subunit; 95.8 0.044 1.5E-06 44.3 8.7 117 23-159 659-775 (814)
210 1v54_E Cytochrome C oxidase po 95.8 0.055 1.9E-06 32.1 6.5 64 62-126 25-88 (109)
211 3ly7_A Transcriptional activat 95.7 0.39 1.3E-05 35.7 12.4 141 14-174 192-349 (372)
212 1zu2_A Mitochondrial import re 95.5 0.031 1.1E-06 36.3 5.3 97 27-126 13-133 (158)
213 2kc7_A BFR218_protein; tetratr 95.4 0.17 5.8E-06 29.0 8.6 57 55-112 8-65 (99)
214 2kc7_A BFR218_protein; tetratr 95.0 0.15 5E-06 29.3 7.0 56 22-77 6-65 (99)
215 3dss_A Geranylgeranyl transfer 94.8 0.79 2.7E-05 33.5 12.1 119 3-123 92-233 (331)
216 2uy1_A Cleavage stimulation fa 94.8 0.63 2.1E-05 35.9 11.7 120 18-161 288-412 (493)
217 1pc2_A Mitochondria fission pr 94.7 0.29 1E-05 31.4 8.0 66 45-111 30-100 (152)
218 2v5f_A Prolyl 4-hydroxylase su 94.3 0.42 1.4E-05 28.1 9.0 65 48-112 6-76 (104)
219 2y69_E Cytochrome C oxidase su 94.3 0.39 1.3E-05 30.2 7.6 64 62-126 68-131 (152)
220 3ly7_A Transcriptional activat 94.0 0.38 1.3E-05 35.7 8.4 69 45-115 275-343 (372)
221 3bee_A Putative YFRE protein; 93.8 0.51 1.7E-05 27.3 7.9 48 63-111 25-72 (93)
222 1wy6_A Hypothetical protein ST 93.8 0.63 2.1E-05 29.5 7.8 122 26-164 17-156 (172)
223 1wy6_A Hypothetical protein ST 93.7 0.51 1.7E-05 29.9 7.3 69 46-115 90-158 (172)
224 3mkq_B Coatomer subunit alpha; 93.7 0.95 3.2E-05 29.8 11.3 48 25-74 14-61 (177)
225 3lvg_A Clathrin heavy chain 1; 93.5 0.0022 7.5E-08 49.3 -4.1 137 15-155 53-221 (624)
226 1pc2_A Mitochondria fission pr 93.5 0.56 1.9E-05 30.1 7.6 63 14-76 30-100 (152)
227 1dce_A Protein (RAB geranylger 93.5 2.2 7.6E-05 33.5 13.7 126 30-174 43-184 (567)
228 2ff4_A Probable regulatory pro 92.9 0.87 3E-05 33.9 9.0 73 50-123 174-251 (388)
229 2ff4_A Probable regulatory pro 92.4 0.88 3E-05 33.9 8.5 111 46-173 111-250 (388)
230 2v5f_A Prolyl 4-hydroxylase su 91.8 1.1 3.9E-05 26.1 8.2 78 80-169 3-80 (104)
231 3u64_A Protein TP_0956; tetrat 91.8 1.1 3.7E-05 32.2 7.8 93 32-124 179-284 (301)
232 3mkq_B Coatomer subunit alpha; 91.2 2.2 7.5E-05 28.1 9.3 93 2-107 22-114 (177)
233 3bee_A Putative YFRE protein; 89.7 1.8 6.3E-05 24.9 10.1 66 80-162 4-72 (93)
234 1nzn_A CGI-135 protein, fissio 89.6 2.5 8.4E-05 26.2 8.4 18 144-161 85-102 (126)
235 4gns_B Protein CSD3, chitin bi 89.5 4.2 0.00014 33.3 10.2 124 19-159 251-397 (754)
236 2nsz_A Programmed cell death p 89.4 2.5 8.7E-05 26.1 7.8 65 19-83 10-79 (129)
237 4h7y_A Dual specificity protei 88.9 3.3 0.00011 26.6 10.8 105 45-167 11-128 (161)
238 4b4t_R RPN7, 26S proteasome re 88.6 4.6 0.00016 30.5 9.5 102 49-162 133-237 (429)
239 3u64_A Protein TP_0956; tetrat 88.0 5.8 0.0002 28.5 13.7 129 30-175 135-284 (301)
240 2ion_A PDCD4, programmed cell 87.9 3.8 0.00013 26.2 7.8 66 19-84 12-82 (152)
241 3ltj_A Alpharep-4; protein eng 86.5 5.1 0.00017 26.2 16.5 146 7-161 19-179 (201)
242 2uy1_A Cleavage stimulation fa 84.6 12 0.00041 28.8 10.2 90 50-159 289-380 (493)
243 1nzn_A CGI-135 protein, fissio 84.5 5 0.00017 24.8 6.4 68 45-112 33-104 (126)
244 3l6a_A Eukaryotic translation 84.4 10 0.00036 28.0 10.7 91 18-108 14-113 (364)
245 1ug3_A EIF4GI, eukaryotic prot 84.2 10 0.00035 27.6 12.2 140 19-158 14-166 (339)
246 1oyz_A Hypothetical protein YI 83.9 8.6 0.00029 26.6 12.9 80 13-96 102-187 (280)
247 2uwj_G Type III export protein 82.0 6 0.00021 23.5 6.4 52 24-77 47-98 (115)
248 2p58_C Putative type III secre 81.2 6.5 0.00022 23.4 6.0 27 27-53 51-77 (116)
249 4h7y_A Dual specificity protei 80.6 9.1 0.00031 24.6 8.0 104 14-118 11-130 (161)
250 3ltm_A Alpha-REP4; protein eng 79.8 10 0.00036 24.8 17.3 91 7-101 24-114 (211)
251 2ion_A PDCD4, programmed cell 79.1 8.1 0.00028 24.6 6.2 72 49-121 11-84 (152)
252 2nsz_A Programmed cell death p 78.9 9.1 0.00031 23.6 7.6 72 49-121 9-82 (129)
253 2r9g_A AAA ATPase, central reg 78.6 13 0.00043 25.0 9.6 87 51-138 15-110 (204)
254 1v54_E Cytochrome C oxidase po 77.7 8.8 0.0003 22.8 7.0 59 101-176 29-87 (109)
255 1wgl_A TOLL-interacting protei 77.2 5.7 0.00019 20.9 4.2 23 146-168 36-58 (59)
256 3eiq_C Programmed cell death p 77.2 19 0.00066 26.5 8.6 63 19-81 220-287 (358)
257 2zu6_B Programmed cell death p 75.6 20 0.00068 25.8 8.1 64 19-82 169-237 (307)
258 3ygs_P Procaspase 9; apoptosis 75.3 4.9 0.00017 23.4 4.1 38 30-67 51-88 (97)
259 3bge_A Predicted ATPase; struc 74.8 16 0.00056 24.4 8.7 64 51-114 8-79 (201)
260 4fhn_B Nucleoporin NUP120; pro 74.2 42 0.0014 28.9 16.3 116 14-131 840-985 (1139)
261 3ltm_A Alpha-REP4; protein eng 73.0 17 0.00057 23.8 14.8 129 7-143 55-183 (211)
262 2fe3_A Peroxide operon regulat 72.2 15 0.00052 22.9 7.9 60 71-131 11-70 (145)
263 1mzb_A Ferric uptake regulatio 71.6 15 0.00052 22.6 7.5 59 72-131 8-67 (136)
264 2zu6_B Programmed cell death p 71.5 26 0.00087 25.2 9.4 57 19-75 6-66 (307)
265 3lvg_A Clathrin heavy chain 1; 70.9 0.37 1.3E-05 37.4 -2.0 52 14-65 81-134 (624)
266 3o48_A Mitochondria fission 1 70.8 16 0.00056 22.7 7.5 68 45-112 38-108 (134)
267 4b4t_P 26S proteasome regulato 70.6 32 0.0011 26.0 8.8 91 20-110 141-246 (445)
268 3eyy_A Putative iron uptake re 70.3 17 0.00059 22.7 6.4 59 71-131 8-66 (145)
269 1zbp_A Hypothetical protein VP 69.8 11 0.00038 26.6 5.4 57 55-112 5-61 (273)
270 2w57_A Ferric uptake regulatio 69.8 18 0.00062 22.8 7.4 60 71-131 6-66 (150)
271 3ctd_A Putative ATPase, AAA fa 69.1 24 0.00081 23.9 8.5 69 46-114 31-107 (213)
272 3txn_A 26S proteasome regulato 69.1 34 0.0011 25.6 9.2 60 52-111 104-168 (394)
273 3txn_A 26S proteasome regulato 68.3 35 0.0012 25.5 13.5 143 18-171 21-179 (394)
274 3ltj_A Alpharep-4; protein eng 67.2 23 0.00077 22.9 15.1 130 7-144 50-179 (201)
275 3ygs_P Procaspase 9; apoptosis 66.1 9 0.00031 22.3 3.8 40 61-104 51-90 (97)
276 1y8m_A FIS1; mitochondria, unk 65.3 23 0.00079 22.4 8.5 68 45-112 37-107 (144)
277 1zbp_A Hypothetical protein VP 64.5 35 0.0012 24.1 10.9 115 24-162 5-129 (273)
278 2xig_A Ferric uptake regulatio 61.9 27 0.00092 22.0 8.5 61 70-131 15-75 (150)
279 4b4t_P 26S proteasome regulato 61.8 49 0.0017 25.0 9.4 60 51-110 141-205 (445)
280 2yru_A Steroid receptor RNA ac 61.8 17 0.00059 22.0 4.6 44 69-112 48-91 (118)
281 2uwj_G Type III export protein 61.2 23 0.0008 21.0 6.5 31 90-124 47-77 (115)
282 2wpv_A GET4, UPF0363 protein Y 61.0 44 0.0015 24.1 13.3 76 56-131 62-148 (312)
283 2d2s_A Exocyst complex compone 60.9 37 0.0013 23.3 7.1 23 53-75 24-46 (235)
284 2p58_C Putative type III secre 60.4 24 0.00083 21.0 7.2 31 90-124 48-78 (116)
285 3bu8_A Telomeric repeat-bindin 60.2 38 0.0013 23.1 7.4 50 62-111 87-143 (235)
286 3eiq_C Programmed cell death p 59.7 43 0.0015 24.7 7.1 78 49-127 219-298 (358)
287 2qq8_A TBC1 domain family memb 59.7 26 0.00088 25.4 6.0 43 70-112 216-258 (334)
288 2p1h_A APAF-1, apoptotic prote 59.6 19 0.00067 20.5 4.4 38 28-65 48-85 (94)
289 3mwm_A ZUR, putative metal upt 58.8 30 0.001 21.4 5.6 57 74-131 6-62 (139)
290 3esl_A Checkpoint serine/threo 57.8 40 0.0014 22.6 8.8 53 63-115 95-148 (202)
291 4ets_A Ferric uptake regulatio 57.3 35 0.0012 21.8 7.6 68 63-131 13-83 (162)
292 2fu4_A Ferric uptake regulatio 56.0 23 0.00079 19.4 7.4 58 71-129 6-64 (83)
293 2p1h_A APAF-1, apoptotic prote 55.8 25 0.00086 20.0 4.5 39 60-102 49-87 (94)
294 4a1g_A Mitotic checkpoint seri 54.6 39 0.0013 21.5 7.1 83 33-118 52-137 (152)
295 3esl_A Checkpoint serine/threo 53.8 47 0.0016 22.3 9.2 53 29-81 92-149 (202)
296 4b4t_R RPN7, 26S proteasome re 53.6 68 0.0023 24.0 12.1 94 18-111 133-237 (429)
297 2o03_A Probable zinc uptake re 51.4 39 0.0013 20.6 5.4 45 87-131 15-59 (131)
298 2rg8_A Programmed cell death p 49.8 33 0.0011 22.1 4.7 57 19-75 13-73 (165)
299 3lpz_A GET4 (YOR164C homolog); 49.2 75 0.0026 23.2 13.1 68 19-97 38-109 (336)
300 2b7e_A PRE-mRNA processing pro 48.2 18 0.0006 19.0 2.6 30 149-178 2-31 (59)
301 2y69_E Cytochrome C oxidase su 47.8 50 0.0017 20.8 9.0 55 105-176 76-130 (152)
302 1te4_A Conserved protein MTH18 47.6 43 0.0015 20.0 7.5 107 12-127 22-128 (131)
303 3pvs_A Replication-associated 47.1 91 0.0031 23.6 10.8 110 63-175 167-297 (447)
304 1ug3_A EIF4GI, eukaryotic prot 47.0 52 0.0018 23.8 5.9 68 49-117 13-81 (339)
305 1oai_A Nuclear RNA export fact 45.2 23 0.00079 18.5 2.8 23 146-168 33-56 (59)
306 3ffl_A Anaphase-promoting comp 44.1 63 0.0022 20.9 7.7 108 54-161 27-150 (167)
307 2fe3_A Peroxide operon regulat 43.8 56 0.0019 20.3 5.8 64 35-98 9-72 (145)
308 3l6a_A Eukaryotic translation 43.8 95 0.0032 22.9 9.5 71 49-123 14-89 (364)
309 3f3f_C Nucleoporin NUP85; stru 42.7 93 0.0032 24.6 6.8 54 46-101 515-568 (570)
310 4aez_C MAD3, mitotic spindle c 42.5 79 0.0027 21.6 7.1 83 32-116 100-184 (223)
311 4fhn_B Nucleoporin NUP120; pro 41.8 1.7E+02 0.0058 25.2 13.5 130 19-162 815-967 (1139)
312 2o03_A Probable zinc uptake re 41.2 59 0.002 19.7 4.9 41 138-178 15-55 (131)
313 3qye_A TBC1 domain family memb 41.0 97 0.0033 22.2 6.7 45 70-114 211-255 (331)
314 1wxp_A THO complex subunit 1; 41.0 49 0.0017 19.6 4.2 50 118-167 59-108 (110)
315 2ko4_A Mediator of RNA polymer 40.9 27 0.00093 19.5 2.7 16 14-29 34-49 (81)
316 2wvi_A Mitotic checkpoint seri 40.0 74 0.0025 20.5 7.5 85 32-119 46-133 (164)
317 3mwm_A ZUR, putative metal upt 39.8 43 0.0015 20.7 4.0 48 51-98 17-64 (139)
318 3hra_A Ankyrin repeat family p 39.5 71 0.0024 20.2 5.8 21 149-169 154-174 (201)
319 2keb_A DNA polymerase subunit 39.1 58 0.002 19.1 7.0 57 64-122 26-87 (101)
320 3m0z_A Putative aldolase; MCSG 37.9 23 0.00078 24.4 2.5 79 32-110 147-246 (249)
321 4ets_A Ferric uptake regulatio 37.4 79 0.0027 20.1 5.3 67 34-100 19-87 (162)
322 4gq2_M Nucleoporin NUP120; bet 35.3 2E+02 0.0069 24.2 10.1 87 22-110 816-925 (950)
323 2d2s_A Exocyst complex compone 35.3 1.1E+02 0.0036 21.0 6.0 83 22-107 24-116 (235)
324 1zl8_A LIN-7; heterodimer, alp 34.7 16 0.00056 18.4 1.1 23 147-169 7-29 (53)
325 4f52_E Glomulin; cullin-ring E 34.4 69 0.0024 25.4 5.1 27 46-72 27-53 (596)
326 2wvi_A Mitotic checkpoint seri 33.4 97 0.0033 20.0 8.1 55 99-168 77-131 (164)
327 3m6y_A 4-hydroxy-2-oxoglutarat 33.4 24 0.00081 24.6 2.1 79 32-110 170-269 (275)
328 1mzb_A Ferric uptake regulatio 33.3 68 0.0023 19.6 4.1 53 47-99 17-70 (136)
329 3ctd_A Putative ATPase, AAA fa 33.3 72 0.0025 21.6 4.3 32 144-175 46-77 (213)
330 3t8k_A Uncharacterized protein 33.1 97 0.0033 19.8 6.8 93 25-117 12-109 (186)
331 2r9g_A AAA ATPase, central reg 33.0 58 0.002 21.9 3.8 31 144-175 25-55 (204)
332 2xs6_A Phosphatidylinositol 3- 32.0 35 0.0012 23.0 2.8 52 6-57 92-145 (214)
333 2qfz_A TBC1 domain family memb 31.8 1.2E+02 0.0041 21.9 5.8 45 70-114 232-276 (345)
334 2xig_A Ferric uptake regulatio 31.5 96 0.0033 19.3 6.3 55 45-99 24-78 (150)
335 1ixm_A SPO0B, protein (sporula 31.1 52 0.0018 21.7 3.5 25 137-161 36-60 (192)
336 2gno_A DNA polymerase III, gam 29.1 1.1E+02 0.0036 21.8 5.0 47 50-98 210-258 (305)
337 3eyy_A Putative iron uptake re 28.1 1.1E+02 0.0038 18.9 5.0 48 50-98 21-68 (145)
338 1jr3_A DNA polymerase III subu 27.8 1.7E+02 0.0057 20.9 9.7 99 64-168 181-280 (373)
339 2dod_A Transcription elongatio 26.7 78 0.0027 17.7 3.2 36 62-98 15-51 (82)
340 3crd_A Raidd; caspase recruitm 26.7 96 0.0033 17.8 4.0 32 28-59 47-78 (100)
341 2rg8_A Programmed cell death p 26.6 1.3E+02 0.0044 19.3 7.9 27 49-75 12-38 (165)
342 3o48_A Mitochondria fission 1 26.6 1.2E+02 0.0041 18.8 9.7 73 77-167 35-110 (134)
343 3bqo_A Telomeric repeat-bindin 26.2 1.4E+02 0.0048 20.1 4.7 25 138-162 122-146 (211)
344 1uzc_A Hypothetical protein FL 26.1 80 0.0027 17.1 3.1 30 148-177 13-42 (71)
345 2f6m_A Suppressor protein STP2 26.1 83 0.0028 16.8 5.0 46 48-94 3-48 (65)
346 2ijq_A Hypothetical protein; s 24.9 1.4E+02 0.0049 19.1 7.4 54 58-111 43-104 (161)
347 1jr3_D DNA polymerase III, del 24.7 1.3E+02 0.0045 21.4 5.0 92 73-169 155-246 (343)
348 3lxu_X Tripeptidyl-peptidase 2 23.9 3.1E+02 0.01 24.5 7.4 33 59-93 1296-1328(1354)
349 3bvf_A Ferritin; iron storage, 23.7 94 0.0032 20.1 3.7 94 63-164 65-160 (181)
350 2jp7_A MRNA export factor MEX6 23.6 70 0.0024 16.5 2.4 20 62-82 34-53 (57)
351 3qil_A Clathrin heavy chain 1; 23.0 81 0.0028 19.3 2.9 51 50-103 35-85 (125)
352 4a1g_A Mitotic checkpoint seri 23.0 1.5E+02 0.0052 18.8 9.1 47 35-81 84-135 (152)
353 3cqc_A Nuclear pore complex pr 22.1 63 0.0022 22.7 2.7 26 50-75 37-62 (270)
354 2w57_A Ferric uptake regulatio 22.0 1.5E+02 0.0052 18.4 4.9 48 51-98 20-68 (150)
355 1q2z_A ATP-dependent DNA helic 21.8 57 0.0019 19.7 2.1 51 61-114 41-95 (120)
356 2crb_A Nuclear receptor bindin 21.7 1.3E+02 0.0044 17.4 4.0 25 49-73 17-41 (97)
357 3cqc_A Nuclear pore complex pr 21.6 66 0.0023 22.6 2.7 27 19-45 37-63 (270)
358 2p22_A Suppressor protein STP2 20.5 1.9E+02 0.0064 18.9 5.0 50 45-95 109-158 (174)
359 1krq_A Ferritin; H-chain like 20.3 1.7E+02 0.0059 18.4 4.5 96 62-164 50-146 (167)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.1e-36 Score=233.46 Aligned_cols=177 Identities=7% Similarity=0.035 Sum_probs=156.8
Q ss_pred HHHHhhhcCC----CCh-hHHHHHHHHHhccCCHHHHHHHhcccC----CCcHHHHHHHHHHHHhcCc---------HHH
Q 038237 4 TLEIFGTMKN----KDV-ISYTAIVSGYINREQVDIARQCFDQMP----ERDYVLWTTMIDGYLRVNR---------FRE 65 (181)
Q Consensus 4 a~~~~~~~~~----~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~---------~~~ 65 (181)
++.+.+++++ +.+ .+++.+|++|+|.|++++|.++|++|. .||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4445555553 233 368899999999999999999999998 4899999999999987654 789
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--------------
Q 038237 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------- 131 (181)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------- 131 (181)
|.++|++|...|+.||..||+++|.+|++.|++++|..+|++|.+.|+.||..||++||.+|++.|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -----chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 132 -----VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 132 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
|..+|++||.+|++.|++++|.++|++|++.|+.|+..||+.|+..|++
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.7e-31 Score=201.91 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=128.8
Q ss_pred HHHHHHhcccCCC-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC---------c
Q 038237 33 DIARQCFDQMPER-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA---------L 98 (181)
Q Consensus 33 ~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~ 98 (181)
..+..+.+++.+. ....++.+|++|++.|++++|+++|++|.+.|++||..|||++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666666642 3346899999999999999999999999999999999999999999998775 4
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------------chHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------------------VKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
+.|.++|++|+..|+.||..||++||.+|++.| |..+||++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 679999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHhhhccC
Q 038237 160 LRASIKPDEVAYVGVLSARTHN 181 (181)
Q Consensus 160 ~~~~~~p~~~t~~~li~~~~~~ 181 (181)
.+.|+.||..||++||++|+++
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=6.9e-26 Score=182.45 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccC-------CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMP-------ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
..||+++|++||+.|++++|.++|++|. .||++|||+||+||++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3479999999999999999999998764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCc-chHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 89 LTARANLGAL-ELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 89 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
|.++++.|+. ++|..+|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999985 6789999999999999999999999876655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=178.93 Aligned_cols=119 Identities=11% Similarity=0.074 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHH---HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQ---TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (181)
-..+||+||++|++.|++++|.++|++|. ..|+.||..|||++|++|++.|++++|.++|++|+..|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998876 468999999999999999999999999999999999999999988888
Q ss_pred HHHHhHhcCchHhHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 123 LIDMYCKCTVKFTWTTMIVGLAISGNG-DKALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 123 ll~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
||+++++ .|+. ++|.++|++|.+.|+.||.+||++++.++.+
T Consensus 206 LI~glcK----------------~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGR----------------QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHH----------------HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHh----------------CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777766 8885 7899999999999999999999988877643
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=3.8e-17 Score=127.88 Aligned_cols=177 Identities=12% Similarity=-0.006 Sum_probs=133.2
Q ss_pred ccHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCC-----------------------------------
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPE----------------------------------- 44 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------------------------- 44 (181)
++|+++|+++.+ ++..+|+.++.++.+.|++++|.++|+++.+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 457777777766 6777777777777777777777777777642
Q ss_pred --CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHH
Q 038237 45 --RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122 (181)
Q Consensus 45 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (181)
.+..+|+.+...|.+.|++++|.++|+++.+.. +.+..+|+.+..++.+.|++++|..+|+++.+.+. .+..+|+.
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 446 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLF 446 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHH
Confidence 245677777777777888888888887776642 22466778888888888888888888888776543 36677777
Q ss_pred HHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC--hhhHHHHHhhh
Q 038237 123 LIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA----SIKPD--EVAYVGVLSAR 178 (181)
Q Consensus 123 ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~t~~~li~~~ 178 (181)
+...|.+.| +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 877777766 6788999999999999999999999998776 67787 67888888877
Q ss_pred cc
Q 038237 179 TH 180 (181)
Q Consensus 179 ~~ 180 (181)
.+
T Consensus 527 ~~ 528 (597)
T 2xpi_A 527 RK 528 (597)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.72 E-value=2.3e-16 Score=123.50 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=103.6
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|+++.. .+..+|+.+...|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556655532 3455666666666666666666666666542 3455666666666666666666666666655
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----------------------c
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------------------V 132 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------------~ 132 (181)
.+ +.+..+|..+..+|.+.|++++|..+|+.+.+.... +..+|+.+...|.+.| +
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 43 235566666666666666666666666666654322 4555666666665555 1
Q ss_pred --hHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 133 --KFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 133 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
..+|+.+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYL 561 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4456666666666666666666666665543 235556665555543
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.44 E-value=3.4e-14 Score=107.01 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=48.0
Q ss_pred CccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 038237 1 MGFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG 80 (181)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (181)
+++|.++++++.+|+ +|..+..++.+.|++++|.+.|.. .+|..+|..++.++...|++++|.+.++...+. .+
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~ 92 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence 468888888886664 899999999999999999999975 467779999999999999999999977666553 45
Q ss_pred cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------chHhHHHHHHHHHHcCChh
Q 038237 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------VKFTWTTMIVGLAISGNGD 150 (181)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~li~~~~~~~~~~ 150 (181)
+..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| ....|+.+..++.+.|+++
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp ----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHH
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHH
Confidence 67888999999999999999887775 367779999999998887 6778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHhhhcc
Q 038237 151 KALDMFSQMLRASIKPDEVAYVGVLSARTH 180 (181)
Q Consensus 151 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 180 (181)
.|.+.++++ .+..||..++.+|..
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHH
Confidence 999999999 388999999998863
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=6.9e-11 Score=87.95 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+..+...+.+.|++++|.+.|+++.+ .+..+|..+...+.+.|++++|.+.|+++.+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444555555555544432 2344555555555555555555555555544
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=3.5e-11 Score=89.55 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=95.0
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-------------------------------
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R------------------------------- 45 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~------------------------------- 45 (181)
++|++.|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ |
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355666665542 3 345677777777777777777777766542 1
Q ss_pred ----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHH
Q 038237 46 ----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 46 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
+..++..+...+.+.|++++|.+.|+++.+.+- .+..+|..+...+.+.|++++|...++++.+.. +.+..++.
T Consensus 232 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 344555666666666666666666666655421 134556666666666666666666666666543 23455566
Q ss_pred HHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 122 ALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 122 ~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.+...+.+.| +..+|..+...+.+.|++++|.+.|+++.+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655554 445566666666666666666666666664
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=7.4e-11 Score=82.51 Aligned_cols=170 Identities=9% Similarity=-0.012 Sum_probs=118.9
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... .+...+..+...+.+.|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|++..+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 566677766542 3556677778888888888888888877653 3667777788888888888888888888776
Q ss_pred cCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhH
Q 038237 76 SNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTW 136 (181)
Q Consensus 76 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~ 136 (181)
.+..| +...+..+...+.+.|++++|...++...+.... +...+..+...|...| +...+
T Consensus 134 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 43344 4466777777888888888888888887776432 4556666666666655 45567
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
..+...+.+.|+.++|.+.++++.+. .|+...+..+
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 77777777788888888888877664 3444444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=3.9e-11 Score=90.67 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=122.1
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|+++.. .+...|..+..++.+.|++++|.+.|+.+.+ .+..++..+...|.+.|++++|.+.|+++.+
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777776543 3566788888888888888888888887764 3567788888888888888888888888876
Q ss_pred cCCCccH----HHHHHH------------HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--------
Q 038237 76 SNIMGDE----FTIVSI------------LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------- 131 (181)
Q Consensus 76 ~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------- 131 (181)
.. |+. ..+..+ ...+.+.|++++|...++.+.+... .+...+..+...|.+.|
T Consensus 123 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 123 SN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp SC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred cC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 43 332 444444 3337778888888888888877643 36667777777777766
Q ss_pred ----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 038237 132 ----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 171 (181)
Q Consensus 132 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 171 (181)
+..+|+.+...|.+.|++++|.+.|+++... .|+....
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 247 (450)
T 2y4t_A 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRC 247 (450)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHH
Confidence 6788889999999999999999999998864 4554443
No 12
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=1.2e-11 Score=93.30 Aligned_cols=158 Identities=7% Similarity=0.014 Sum_probs=85.9
Q ss_pred ccHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM 79 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 79 (181)
++|+++++..++ +++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 78 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 566776665553 566778888888888888888888775 367778999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--------------chHhHHHHHHHHHH
Q 038237 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------------VKFTWTTMIVGLAI 145 (181)
Q Consensus 80 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------~~~~~~~li~~~~~ 145 (181)
..|..+..++.+.|++++|.+.+++. .++.+|..++.+|...| .......++..|.+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 47888899999999999998888877 37889999999998876 33334468888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 146 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.|++++|..+++...... +--...|.-|--.+
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~ 251 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILY 251 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHH
Confidence 999999999999887543 23333444443333
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.33 E-value=1.2e-10 Score=88.03 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=97.1
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cH---HHHHHHHHH------------HHhc
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DY---VLWTTMIDG------------YLRV 60 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~---~~~~~li~~------------~~~~ 60 (181)
++|++.|+++.+ | +...+..+...+.+.|++++|.+.|+++.+ | +. ..+..+... +.+.
T Consensus 77 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666666543 3 455677777777777777777777777754 2 22 445444333 6667
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------- 131 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 131 (181)
|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...|..+...|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776542 22556666677777777777777777777665432 24556666666666555
Q ss_pred ---------chHhHHHH------------HHHHHHcCChhHHHHHHHHHHH
Q 038237 132 ---------VKFTWTTM------------IVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ---------~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+...+..+ ...+.+.|++++|.+.|+++.+
T Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22333333 5556666666666666666655
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=5.5e-10 Score=80.57 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccC----CC-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMP----ER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
|+..++..+...+.+.++.++|.+.++++. .| +...+..+-..+.+.|++++|++.+++ +.+...+..+
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l 136 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHH
Confidence 334444444445555555555555554432 12 233333333444455555555555444 2344444445
Q ss_pred HHHHHccCCcchHHHHHHHHHHc
Q 038237 89 LTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
...+.+.|++++|...++.+.+.
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh
Confidence 55555555555555555555444
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.27 E-value=5.5e-11 Score=87.69 Aligned_cols=174 Identities=10% Similarity=0.008 Sum_probs=104.1
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|++... | +...|..+...+.+.|++++|.+.|+++.+ .+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 456666665542 3 455677777777777777777777777653 3566777777777777777777777777665
Q ss_pred cCCCcc-----------HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcC------------
Q 038237 76 SNIMGD-----------EFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCT------------ 131 (181)
Q Consensus 76 ~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~------------ 131 (181)
.. |+ ...+..+...+.+.|++++|...+++..+.... ++...+..+...|...|
T Consensus 162 ~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 162 QN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32 21 111223345555666666666666666655322 14566666666666555
Q ss_pred ------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 132 ------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 132 ------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
+..+|+.+...|.+.|++++|.+.|++..+.. +.+...+..+...|
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 56677777777777888888888887777641 22345555554443
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.25 E-value=4.2e-10 Score=78.02 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=125.5
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|++..+ | +...+..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++..+
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555665533 3 566788888999999999999999988763 4777888888999999999999999999887
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHH
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWT 137 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~ 137 (181)
.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+...+.+.| +...|.
T Consensus 120 ~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (243)
T 2q7f_A 120 AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197 (243)
T ss_dssp HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 54 236677888888999999999999999998876433 5566777777776665 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+...+.+.|++++|.+.+++..+.
T Consensus 198 ~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 198 NAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888999999999999999998874
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.24 E-value=9e-10 Score=75.28 Aligned_cols=125 Identities=12% Similarity=-0.042 Sum_probs=66.6
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRV-NRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~ 75 (181)
+|++.|++... | +...+..+...+.+.|++++|.+.++...+ .+..++..+...+... |++++|.+.|++..+
T Consensus 26 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 26 QATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 44455544332 2 344555566666666666666666665542 2455566666666666 666666666666655
Q ss_pred cCCCcc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 76 SNIMGD-EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 76 ~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
.+..|+ ...+..+...+.+.|++++|...++...+.... +...+..+...+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 158 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKM 158 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 222222 345555556666666666666666666554322 2333444444443
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=2e-09 Score=73.47 Aligned_cols=160 Identities=8% Similarity=-0.094 Sum_probs=129.5
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...|..+...+.+.|++++|.+.|+.+.+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456788889999999999999999998764 467889999999999999999999999998754 2367788899999
Q ss_pred HHcc-CCcchHHHHHHHHHHcCCCc-chHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhH
Q 038237 92 RANL-GALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 92 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~ 151 (181)
+... |++++|...++...+.+..| +...+..+...+...| +...|..+...+.+.|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 99999999999998843233 3567777777777766 57788899999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHH
Q 038237 152 ALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 152 a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
|.+.+++..+..-..+...+..+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999988753213445554443
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.20 E-value=3.1e-09 Score=76.58 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=120.4
Q ss_pred ccHHHHhhhcC----CCC-hhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 2 GFTLEIFGTMK----NKD-VISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 2 ~~a~~~~~~~~----~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
++|++.++++. .|+ ...+..+-..+.+.|++++|.+.++. ..+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 46777787652 364 44566677999999999999999998 568889999999999999999999999999886
Q ss_pred CCCccHHHH---HHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHh
Q 038237 77 NIMGDEFTI---VSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFT 135 (181)
Q Consensus 77 ~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~ 135 (181)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+...+.+.| +..+
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 554321 22334444568999999999999987 3457778888888887766 6777
Q ss_pred HHHHHHHHHHcCChhH-HHHHHHHHHHc
Q 038237 136 WTTMIVGLAISGNGDK-ALDMFSQMLRA 162 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~-a~~~~~~m~~~ 162 (181)
++.++..+...|+.++ +.++++++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8888888888888765 56777777653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.18 E-value=2.4e-10 Score=84.23 Aligned_cols=176 Identities=11% Similarity=-0.040 Sum_probs=131.7
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc-----------HHHHHHHHHHHHhcCcHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--RD-----------YVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-----------~~~~~~li~~~~~~~~~~~ 65 (181)
++|++.|++... | +...|..+...+.+.|++++|.+.|+++.+ |+ ...+..+...+.+.|++++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence 567778877653 4 567899999999999999999999999874 21 2233445778889999999
Q ss_pred HHHHHHHHHHcCCC-ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-------------
Q 038237 66 ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------- 131 (181)
Q Consensus 66 a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------- 131 (181)
|.+.|+++.+..-. ++..++..+...+.+.|++++|...+++..+.... +..+|..+...|...|
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875421 25788999999999999999999999999887433 6778888888888877
Q ss_pred -----chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCC--------ChhhHHHHHhhh
Q 038237 132 -----VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS---IKP--------DEVAYVGVLSAR 178 (181)
Q Consensus 132 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p--------~~~t~~~li~~~ 178 (181)
+...|..+...|.+.|++++|.+.|++..+.. ..| +...|..+-.++
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 67889999999999999999999999997642 111 356666666554
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.18 E-value=1.5e-09 Score=78.38 Aligned_cols=158 Identities=15% Similarity=0.017 Sum_probs=89.8
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+|++.|++... | +...|..+...+.+.|++++|.+.|+...+ .+...+..+...+...|++++|.+.|++..+.
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34555554432 2 344555566666666666666666655542 23445555666666666666666666666554
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC--------CCcchHHHHHHHHHhHhcC-----------------
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK--------VKNDIFAGNALIDMYCKCT----------------- 131 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~----------------- 131 (181)
. +.+...+..+...+.+.|++++|...++...+.. .+.....+..+...|...|
T Consensus 189 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 189 A-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred C-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 2 2244556666666666666666666666665431 1223345555555555544
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+...|..+...+.+.|++++|.+.|++..+
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 455666666666667777777777666654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.17 E-value=6.5e-10 Score=81.77 Aligned_cols=94 Identities=6% Similarity=-0.055 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..+..+...+.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666665542 244555566666666666666666666655543 124455555666666
Q ss_pred ccCCcchHHHHHHHHHHc
Q 038237 94 NLGALELGEWIKTYIDKN 111 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~ 111 (181)
..|++++|...++.....
T Consensus 144 ~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 144 NESLQRQACEILRDWLRY 161 (368)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666665555543
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=3.8e-09 Score=73.71 Aligned_cols=160 Identities=8% Similarity=-0.086 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...|..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|++..+..- .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 45688888999999999999999998863 4778899999999999999999999999987642 3678888999999
Q ss_pred HccCCcchHHHHHHHHHHcCCCc-chHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~ 153 (181)
...|++++|...++...+.+..| +...+..+...+...| +...|..+...+.+.|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998843334 5667777777777666 5778899999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHhh
Q 038237 154 DMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 154 ~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
+.+++..+.. +.+...+..+...
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~ 218 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRL 218 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHH
Confidence 9999987742 2344455544443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.16 E-value=2.4e-09 Score=77.18 Aligned_cols=160 Identities=10% Similarity=-0.042 Sum_probs=107.1
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|++..+ | +...+..+...+.+.|++++|.+.|+++.+ .+..++..+...+...|++++|.+.|++..+
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666542 3 455677777788888888888888877653 3566777777777777777777777766654
Q ss_pred cCC------------------------------------------------CccHHHHHHHHHHHHccCCcchHHHHHHH
Q 038237 76 SNI------------------------------------------------MGDEFTIVSILTARANLGALELGEWIKTY 107 (181)
Q Consensus 76 ~~~------------------------------------------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 107 (181)
..- +.+...+..+...+.+.|++++|...++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 210 12345566666677777777777777777
Q ss_pred HHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 108 IDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 108 ~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+.... +...+..+...+...| +...|..+...+.+.|++++|.+.+++....
T Consensus 198 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 198 AVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7665322 4555666666665555 5666777777777788888888888777654
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.16 E-value=7.2e-10 Score=76.43 Aligned_cols=153 Identities=15% Similarity=0.066 Sum_probs=84.0
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhc-----------CcHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRV-----------NRFRE 65 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-----------~~~~~ 65 (181)
+|+..|++... | +...+..+-..+.+.|++++|...|+...+ .+...+..+-..+.+. |++++
T Consensus 23 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~ 102 (217)
T 2pl2_A 23 AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102 (217)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHH
Confidence 44455554332 2 334455555556666666666666655542 2444555555555555 66666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHH
Q 038237 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI 145 (181)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~ 145 (181)
|...|++..+..- -+...+..+-..+...|++++|...+++..+.. .+.. .|..+-..+..
T Consensus 103 A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~----------------~~~~la~~~~~ 163 (217)
T 2pl2_A 103 ALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE----------------IRSALAELYLS 163 (217)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH----------------HHHHHHHHHHH
Confidence 6666665554321 133455555555556666666666666655554 3333 44455555556
Q ss_pred cCChhHHHHHHHHHHHcCCCC-ChhhHHHHHh
Q 038237 146 SGNGDKALDMFSQMLRASIKP-DEVAYVGVLS 176 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 176 (181)
.|++++|.+.|++..+. .| +...+..+..
T Consensus 164 ~g~~~~A~~~~~~al~~--~P~~~~~~~~la~ 193 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQ--APKDLDLRVRYAS 193 (217)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 88888888888888764 23 3344444433
No 26
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.6e-08 Score=66.81 Aligned_cols=142 Identities=8% Similarity=-0.012 Sum_probs=84.9
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
|..+...+.+.|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 44555556666666666666666553 245555666666666666666666666655432 12445555556666666
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHH
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFS 157 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~ 157 (181)
|++++|...++...+.... +...+..+...+...| +...|..+...+...|++++|.+.++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666554322 3344444444444433 44566667777777888999988888
Q ss_pred HHHHc
Q 038237 158 QMLRA 162 (181)
Q Consensus 158 ~m~~~ 162 (181)
+..+.
T Consensus 169 ~~~~~ 173 (186)
T 3as5_A 169 KANEL 173 (186)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88764
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.8e-09 Score=78.02 Aligned_cols=175 Identities=9% Similarity=-0.061 Sum_probs=129.0
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVN-RFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 74 (181)
++|+++|++... | +...+..+...+.+.|++++|..+++++.+ .+...|..+...+...| ++++|.+.|++..
T Consensus 39 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 39 KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456777776543 3 444566777888888888888888888764 36777888888888888 8899999998887
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTW 136 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~ 136 (181)
+.. +.+...+..+...+...|++++|...++...+.... +...+..+...|...| +...|
T Consensus 119 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 196 (330)
T 3hym_B 119 TLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196 (330)
T ss_dssp TTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHH
Confidence 653 224567888888888899999999998888876443 3445555666666655 67788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcC--------CCCChhhHHHHHhhh
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRAS--------IKPDEVAYVGVLSAR 178 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~t~~~li~~~ 178 (181)
..+...+.+.|++++|.+.+++..+.. .+.+...+..+...+
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 889999999999999999999987641 133345666555544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.2e-09 Score=76.13 Aligned_cols=174 Identities=9% Similarity=0.011 Sum_probs=130.8
Q ss_pred ccHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc--------HHHHHHHHHHHHhcCcHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPE--RD--------YVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~--------~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
++|+++|++..+ ++...|..+...+.+.|++++|.+.++...+ |+ ...|..+...+.+.|++++|.+.
T Consensus 22 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 101 (258)
T 3uq3_A 22 DEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY 101 (258)
T ss_dssp HHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 456666655432 6677888899999999999999999988764 21 57888888999999999999999
Q ss_pred HHHHHHcC------------------------CCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 70 FQEIQTSN------------------------IMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 70 ~~~m~~~~------------------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
|++..+.. ..| +...+..+...+...|++++|...++...+.... +...+..+.
T Consensus 102 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 180 (258)
T 3uq3_A 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRA 180 (258)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHH
Confidence 99887732 222 3456777888888999999999999998876533 566777777
Q ss_pred HHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCChhhHHHHHh
Q 038237 125 DMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS----IKPDEVAYVGVLS 176 (181)
Q Consensus 125 ~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~li~ 176 (181)
..|...| +...|..+...+.+.|++++|.+.|++..+.. ..|+.......+.
T Consensus 181 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 181 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 7777766 57778888888999999999999999887642 2355544444443
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.2e-09 Score=81.22 Aligned_cols=92 Identities=7% Similarity=-0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLA 144 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~ 144 (181)
..+..+...+...|++++|...++...+.... ...+..+...|...| +...|..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 34445555556666666666666666655433 555666666665554 5556777777777
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 145 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 145 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
..|++++|.+.|++..+.. +.+...+..+...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 347 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACL 347 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHH
Confidence 7777777777777776642 1233444444433
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.14 E-value=8.8e-09 Score=68.66 Aligned_cols=151 Identities=10% Similarity=0.022 Sum_probs=97.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+..+|..+-..+.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 344566666777777777777777766653 35566666666777777777777777666554322 34455555566
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~ 153 (181)
+...++++.+...+....+.... +...+..+-..|.+.| +...|..+-..|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666666654322 3444555555554444 5667777888888899999999
Q ss_pred HHHHHHHHcCCCCChh
Q 038237 154 DMFSQMLRASIKPDEV 169 (181)
Q Consensus 154 ~~~~~m~~~~~~p~~~ 169 (181)
+.|++..+. .|+..
T Consensus 162 ~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 162 KYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHT--THHHH
T ss_pred HHHHHHHhC--CccCH
Confidence 999998763 45443
No 31
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=6.4e-09 Score=64.99 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..|..+...+.+.|++++|.++|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577788899999999999999998763 467788889999999999999999999998764 235677888999999
Q ss_pred ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.|++++|...++.+.+.... +... |..+...+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~----------------~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEA----------------WYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHH----------------HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHH----------------HHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999876432 2333 344555566699999999999998764
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.09 E-value=1.9e-08 Score=69.21 Aligned_cols=145 Identities=13% Similarity=-0.019 Sum_probs=117.0
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (181)
++...+..+-..+.+.|++++|...|+...+ .+...+..+-..+.+.|++++|...|++..+.. +-+...+..+-.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5667888899999999999999999998764 477889999999999999999999999998754 225678888888
Q ss_pred HHHcc-----------CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 91 ARANL-----------GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 91 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
.+.+. |++++|...+++..+.... +.. .|..+-..+.+.|++++|.+.|++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~----------------~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAP----------------LHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHH----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHH----------------HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999 9999999999999886433 233 3344445556699999999999999
Q ss_pred HHcCCCCChhhHHHHHhhh
Q 038237 160 LRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 160 ~~~~~~p~~~t~~~li~~~ 178 (181)
.+.. .+...+..+-..+
T Consensus 145 l~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHC--CCHHHHHHHHHHH
T ss_pred Hhcc--cchHHHHHHHHHH
Confidence 9887 6777776665544
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.08 E-value=1.6e-09 Score=79.59 Aligned_cols=160 Identities=12% Similarity=0.015 Sum_probs=117.8
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++..+ .+...|..+..++.+.|++++|.+.|+.+.+ .+..++..+...+...|++++|.+.|+++.+
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777776643 3556788888888888888888888887753 4677788888888888888888888877655
Q ss_pred cCC-----------------------------------------------Cc---cHHHHHHHHHHHHccCCcchHHHHH
Q 038237 76 SNI-----------------------------------------------MG---DEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 76 ~~~-----------------------------------------------~p---~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
..- .| +..++..+...+.+.|++++|...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 321 12 3567777788888888888888888
Q ss_pred HHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 106 TYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+... .+...+..+...+...| +...|..+...+.+.|++++|.+.|++....
T Consensus 241 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 241 TAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88777632 24566777777776665 5667888888888888888888888888754
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.07 E-value=7.1e-09 Score=71.72 Aligned_cols=162 Identities=11% Similarity=-0.005 Sum_probs=114.8
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILT 90 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (181)
.+...|..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|.+.|++..+..- .+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 3555678888889999999999999998864 4778899999999999999999999999887642 36788888999
Q ss_pred HHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHH
Q 038237 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKA 152 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a 152 (181)
.+...|++++|...++...+.... +...+..+...+...| +...|..+...+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999887533 5667777777777766 677888899999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 153 LDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 153 ~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.+.+++..+.. +.+..++..+...+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 99999998762 23455665555544
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.06 E-value=1.6e-08 Score=71.24 Aligned_cols=159 Identities=12% Similarity=0.006 Sum_probs=111.3
Q ss_pred ccHHHHhhhcCC------C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN------K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~~------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 71 (181)
++|++.|+++.+ | +..+|..+...+.+.|++++|.+.|++..+ .+..+|..+...+...|++++|.+.|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 456666666543 1 345677788888888888888888887763 367778888888888888888888888
Q ss_pred HHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcch--------------------------------HH
Q 038237 72 EIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDI--------------------------------FA 119 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------------~~ 119 (181)
+..+.. +.+...+..+...+.+.|++++|...++...+....... ..
T Consensus 102 ~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 102 SVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred HHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence 877643 224677777888888888888888888887765322110 00
Q ss_pred HHHHHHHhHhcC----------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 120 GNALIDMYCKCT----------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 120 ~~~ll~~~~~~~----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+. +...+...+ +...|..+...+.+.|++++|.+.|++....
T Consensus 181 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 181 WN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 11 111111111 2578889999999999999999999999875
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.98 E-value=3e-08 Score=74.20 Aligned_cols=173 Identities=7% Similarity=-0.012 Sum_probs=128.7
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCC-HHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQ-VDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
++|++.|++... | +...|..+-.++.+.|+ +++|.+.|++... .+...|..+-..+.+.|++++|+..|++..
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 567777776653 4 45568888888888996 9999999988874 477788888889999999999999999988
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh-cC----------------------
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-CT---------------------- 131 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~---------------------- 131 (181)
+..-. +...|..+-.++.+.|++++|...+++.++.... +...|+.+-..+.+ .+
T Consensus 194 ~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 194 NQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred HhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 75432 6688888888888999999999999998887544 55566665555544 22
Q ss_pred -chHhHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 132 -VKFTWTTMIVGLAISG--NGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
+...|+.+...+.+.| +.++|++.++++ ..-+.+...+..+...+
T Consensus 272 ~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 272 HNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHH
Confidence 5667888787888777 688898888887 32333445555555444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.98 E-value=4e-08 Score=68.36 Aligned_cols=161 Identities=12% Similarity=0.030 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--Ccc----HHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI--MGD----EFTIVS 87 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 87 (181)
...|..+-..+.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+..- .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34678888999999999999999988753 6788899999999999999999999999876421 112 578889
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCC------------------------C-cchHHHHHHHHHhHhcC-----------
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKV------------------------K-NDIFAGNALIDMYCKCT----------- 131 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------~-~~~~~~~~ll~~~~~~~----------- 131 (181)
+...+.+.|++++|...++...+... . .+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999988431 1 23344555555555554
Q ss_pred -------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 132 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+-..
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 216 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 56677888888888888888888888887652 2234445444443
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.98 E-value=1.7e-08 Score=77.78 Aligned_cols=159 Identities=9% Similarity=-0.066 Sum_probs=126.2
Q ss_pred ccHHHHhhhcCC--CC--------hhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KD--------VISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
++|.++|+++.+ |+ ..++..+...+...|++++|.+.|+...+ |+...|..+...+...|++++|.+.
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 456777776654 43 22466667788889999999999998864 6677888888899999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------ 131 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------ 131 (181)
|++..+..- .+..++..+...+...|++++|...++...+.... +...+..+...|...|
T Consensus 299 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 299 FQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999887542 35678888889999999999999999998886533 4566777777777666
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...|..+...+.+.|++++|.+.|++..+.
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5678888888999999999999999998764
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.98 E-value=2.5e-08 Score=72.64 Aligned_cols=158 Identities=11% Similarity=0.007 Sum_probs=124.6
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... | +...+..+...+.+.|++++|.+.|+.+.+ .+...|..+...+...|++++|.+.|++..+
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 467777776643 3 566788888999999999999999988764 3677888899999999999999999999877
Q ss_pred cCCCc----cHHHHHHH------------HHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC--------
Q 038237 76 SNIMG----DEFTIVSI------------LTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-------- 131 (181)
Q Consensus 76 ~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------- 131 (181)
.. | +...+..+ ...+...|++++|...++...+.... +...+..+...+...|
T Consensus 100 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 100 SN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp SC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHH
Confidence 53 4 33444333 47788899999999999998876443 5566777777777666
Q ss_pred ----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 ----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...|..+...+.+.|++++|.+.|++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778888999999999999999999998865
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.1e-08 Score=78.33 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...|..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEIL 382 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHH
Confidence 33444555555555555555555554431 234445555555555555555555555554431 11334444555555
Q ss_pred HccCCcchHHHHHHHHHHcCCC-cc----hHHHHHHHHHhHh---cC------------------chHhHHHHHHHHHHc
Q 038237 93 ANLGALELGEWIKTYIDKNKVK-ND----IFAGNALIDMYCK---CT------------------VKFTWTTMIVGLAIS 146 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~---~~------------------~~~~~~~li~~~~~~ 146 (181)
.+.|++++|...++...+.... ++ ...+..+...+.. .| +...|..+...+.+.
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 5555555555555555443111 11 2244444444444 33 344445555555555
Q ss_pred CChhHHHHHHHHHHH
Q 038237 147 GNGDKALDMFSQMLR 161 (181)
Q Consensus 147 ~~~~~a~~~~~~m~~ 161 (181)
|++++|.+.|++..+
T Consensus 463 g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 463 EDIDEAITLFEESAD 477 (514)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555544
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.97 E-value=1.2e-07 Score=69.02 Aligned_cols=170 Identities=8% Similarity=-0.003 Sum_probs=125.9
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++..+ .+...+..+...+.+.|++++|.+.++...+ .+..++..+...+...|++++|.+.|++..+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677776543 4667788999999999999999999998864 4778899999999999999999999999887
Q ss_pred cCCCccHHHHH------------HHHHHHHccCCcchHHHHHHHHHHcCCCcch---HHHHHHHHHhHhcC---------
Q 038237 76 SNIMGDEFTIV------------SILTARANLGALELGEWIKTYIDKNKVKNDI---FAGNALIDMYCKCT--------- 131 (181)
Q Consensus 76 ~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~--------- 131 (181)
..- .+...+. .+...+.+.|++++|...++...+....... ..+..+...+...|
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 532 1222222 2356688899999999999999886543211 22334455555555
Q ss_pred ---------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-hhHHHH
Q 038237 132 ---------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE-VAYVGV 174 (181)
Q Consensus 132 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~l 174 (181)
+...|..+...+.+.|++++|.+.|++..+. .|+. ..+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 6778889999999999999999999999874 4553 333333
No 42
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=3.4e-08 Score=79.55 Aligned_cols=143 Identities=8% Similarity=-0.028 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTA 91 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 91 (181)
...|+.+-..+.+.|++++|.+.|++..+ .+..+|..+-..|.+.|++++|++.|++..+.. | +...|..+-..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 44677777888888888888888877653 356777888888888888888888888776643 3 35677777788
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHHcCChhHHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~ 153 (181)
+.+.|++++|.+.+++..+.... +...|+.+-..|.+.| +...|..+...+...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 88888888888888877766433 4556666666666655 5677788888888899999888
Q ss_pred HHHHHHHH
Q 038237 154 DMFSQMLR 161 (181)
Q Consensus 154 ~~~~~m~~ 161 (181)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887753
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.93 E-value=3.1e-08 Score=76.32 Aligned_cols=107 Identities=9% Similarity=0.034 Sum_probs=59.9
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+|++.|++... | +..+|..+...+.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444332 2 344555555666666666666666655542 24455666666666666666666666666554
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
. +.+...+..+...+.+.|++++|...++...+
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 12344555666666666666666666666554
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.91 E-value=2.5e-08 Score=70.21 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc------C-
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE-----------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS------N- 77 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~- 77 (181)
..++..+...+...|++++|.+.+++... ....++..+...+...|++++|.+.|++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567777777788888888777776642 13446777777777788888888887776543 1
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
-+.....+..+...+...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1223466677777777788888888777777654
No 45
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.90 E-value=2e-08 Score=72.36 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=113.6
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++++++... .+...+..+...+.+.|++++|.+.++++.+ .+..+|..+...+...|++++|.+.|++..+
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666766543 3567889999999999999999999998763 4678899999999999999999999999877
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHH
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM 155 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 155 (181)
.. +.+...+..+...+.+.|++++|...++...+............ ....+...|..+...+.+.|++++|.++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA-----SREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----------CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc-----hhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 53 23577888999999999999999999998887543310000000 0000233555666667779999999999
Q ss_pred HHHHH
Q 038237 156 FSQML 160 (181)
Q Consensus 156 ~~~m~ 160 (181)
+++..
T Consensus 309 ~~~~l 313 (327)
T 3cv0_A 309 YAQNV 313 (327)
T ss_dssp TTCCS
T ss_pred HHHHH
Confidence 87654
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.90 E-value=6.3e-08 Score=74.36 Aligned_cols=157 Identities=12% Similarity=-0.006 Sum_probs=125.2
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCH-HHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQV-DIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++++.++.... | +...+..+-..+...|++ ++|.+.|++..+ .+..+|..+-..|.+.|++++|.+.|++..+
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445544332 3 566788888899999999 999999988763 3677899999999999999999999999887
Q ss_pred cCCCccHHHHHHHHHHHHcc---------CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc--------C-------
Q 038237 76 SNIMGDEFTIVSILTARANL---------GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC--------T------- 131 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~------- 131 (181)
.. |+...+..+-..+... |++++|...+++..+.... +...|..+-..|... +
T Consensus 166 ~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 166 HC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp TC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 54 7778888888888888 9999999999998887533 456666666666544 2
Q ss_pred --------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 --------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677888999999999999999999999875
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.86 E-value=2e-07 Score=67.42 Aligned_cols=171 Identities=8% Similarity=0.058 Sum_probs=119.6
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHh-------ccCCH-------HHHHHHhcccCC---C-cHHHHHHHHHHHHhcC
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYI-------NREQV-------DIARQCFDQMPE---R-DYVLWTTMIDGYLRVN 61 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~---~-~~~~~~~li~~~~~~~ 61 (181)
+|+.+|++... | ++..|..+...+. +.|++ ++|..+|+...+ | +...|..+...+.+.|
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 45667776654 4 5556777776665 35775 888888887754 3 5568888888888899
Q ss_pred cHHHHHHHHHHHHHcCCCccH-H-HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH-hcC-------
Q 038237 62 RFREALTLFQEIQTSNIMGDE-F-TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCT------- 131 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~------- 131 (181)
++++|.++|++..+. .|+. . .|..+...+.+.|++++|..+|++..+.... +...|........ ..|
T Consensus 114 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 114 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998873 4543 3 7888888888889999999999888876432 3333332222211 112
Q ss_pred -----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC--hhhHHHHHh
Q 038237 132 -----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPD--EVAYVGVLS 176 (181)
Q Consensus 132 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~t~~~li~ 176 (181)
+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++.
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 67788888888889999999999999998873 5653 345554443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.85 E-value=6.9e-07 Score=63.13 Aligned_cols=156 Identities=10% Similarity=-0.081 Sum_probs=115.2
Q ss_pred ccHHHHhhhcCCC-ChhHHHHHHHHHhc----cCCHHHHHHHhcccCC-CcHHHHHHHHHHHHh----cCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMKNK-DVISYTAIVSGYIN----REQVDIARQCFDQMPE-RDYVLWTTMIDGYLR----VNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 71 (181)
++|++.|++..+| +...+..+-..+.+ .+++++|.+.|++..+ .+...+..+-..|.. .+++++|++.|+
T Consensus 23 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 102 (273)
T 1ouv_A 23 TQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYS 102 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHH
Confidence 4567777765544 44567777777888 8888888888887764 467778888888888 888899999888
Q ss_pred HHHHcCCCccHHHHHHHHHHHHc----cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh----cC------------
Q 038237 72 EIQTSNIMGDEFTIVSILTARAN----LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----CT------------ 131 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~------------ 131 (181)
+..+.+ +...+..+-..+.. .+++++|...+++..+.+ +...+..+-..|.. .+
T Consensus 103 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 103 KACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 888764 66777777777877 888888888888888765 33444445444443 22
Q ss_pred ----chHhHHHHHHHHHH----cCChhHHHHHHHHHHHcC
Q 038237 132 ----VKFTWTTMIVGLAI----SGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 132 ----~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 163 (181)
+...+..+-..|.. .+++++|.+.|++..+.+
T Consensus 177 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 177 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 56677777778888 888888888888887764
No 49
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=5.3e-07 Score=61.21 Aligned_cols=143 Identities=10% Similarity=-0.119 Sum_probs=109.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
.+..+-..+.+.|++++|.+.|++...++...|..+...+.+.|++++|.+.|++..+.. +.+...+..+-..+.+.|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355667788899999999999999998899999999999999999999999999988754 3366788899999999999
Q ss_pred cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+++|...++...+.........|..+.. -....+...|..+-..+.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGL-QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTB-CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhcc-ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999988533211000000000 000003345666777778899999999999999875
No 50
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=7.4e-08 Score=68.84 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc------CC
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE-----------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS------NI 78 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 78 (181)
...+..+...+...|++++|.+.|++..+ .....+..+...+...|++++|.+.|++..+. +-
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688889999999999999999998763 14456888889999999999999999998764 22
Q ss_pred Ccc-HHHHHHHHHHHHccCCcchHHHHHHHHHHcC-------CCcchHHHHHHHHHhHhcC-------------------
Q 038237 79 MGD-EFTIVSILTARANLGALELGEWIKTYIDKNK-------VKNDIFAGNALIDMYCKCT------------------- 131 (181)
Q Consensus 79 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~------------------- 131 (181)
.|+ ..++..+...+.+.|++++|...+++..+.. ..+...........+...+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 333 4678888999999999999999999888631 1111111111111111110
Q ss_pred ------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 ------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+..+|..+...|.+.|++++|.+.|++..+
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567788999999999999999999998865
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.77 E-value=6.2e-07 Score=62.99 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=58.6
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m 73 (181)
+|+++|++..+ | +...+..+...+.+.|++++|.+.+++..+ ++ ...|..+...+...|++++|.+.|++.
T Consensus 21 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45555554432 2 233555555666666666666666655543 11 223555566666666666666666665
Q ss_pred HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.+..- -+...+..+...+...|++++|...+++..+.
T Consensus 101 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 101 VDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 55321 13355556666666666666666666555544
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=2.2e-06 Score=60.55 Aligned_cols=143 Identities=9% Similarity=-0.046 Sum_probs=119.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCC-cHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLR----VNRFREALTLFQEIQTSNIMGDEFTIVSIL 89 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (181)
+...+..+-..+.+.|++++|.+.|+...++ +..++..+-..|.. .+++++|.+.|++..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567788888999999999999999988764 66778888888999 999999999999998876 677888888
Q ss_pred HHHHc----cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh----cC----------------chHhHHHHHHHHHH
Q 038237 90 TARAN----LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK----CT----------------VKFTWTTMIVGLAI 145 (181)
Q Consensus 90 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~----------------~~~~~~~li~~~~~ 145 (181)
..+.. .+++++|...+++..+.+ +...+..+-..|.. .+ +...+..+-..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 88888 999999999999998875 55566666666665 33 66677778788887
Q ss_pred ----cCChhHHHHHHHHHHHcC
Q 038237 146 ----SGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 146 ----~~~~~~a~~~~~~m~~~~ 163 (181)
.+++++|.+.|++..+.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988764
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.77 E-value=3e-08 Score=76.21 Aligned_cols=157 Identities=9% Similarity=-0.059 Sum_probs=128.7
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhc---------CcHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRV---------NRFREAL 67 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~---------~~~~~a~ 67 (181)
++|++.|++..+ | +...|..+-.++.+.|++++|.+.|+...+ |+...+..+-..+... |++++|.
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 678888887653 4 466899999999999999999999998874 6778888899999999 9999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHcc--------CCcchHHHHHHHHHHcCCC--cchHHHHHHHHHhHhcC------
Q 038237 68 TLFQEIQTSNIMGDEFTIVSILTARANL--------GALELGEWIKTYIDKNKVK--NDIFAGNALIDMYCKCT------ 131 (181)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~------ 131 (181)
+.|++..+..- -+...|..+-.++... |++++|...+++..+.... .+...|..+-..|...|
T Consensus 200 ~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 200 RQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999887542 2567888888888888 8999999999999887431 36777888888887777
Q ss_pred ------------chHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 132 ------------VKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 132 ------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
+...+..+-..+...|++++|.+.++++
T Consensus 279 ~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 279 EGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6667888888888889999988766554
No 54
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=3.1e-07 Score=71.85 Aligned_cols=144 Identities=8% Similarity=-0.056 Sum_probs=106.8
Q ss_pred CccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 1 MGFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 1 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+++|++.|++..+ | +...|..+-..+.+.|++++|.+.|++..+ .+...|..+-..+...|++++|.+.|++..
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3678888887764 4 466788999999999999999999998875 367789999999999999999999999988
Q ss_pred HcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHc---CChhH
Q 038237 75 TSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAIS---GNGDK 151 (181)
Q Consensus 75 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~---~~~~~ 151 (181)
+..- -+...+..+-..+.+.|++++|...+++..+.... +...+. .+...+... |+.++
T Consensus 85 ~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~----------------~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 85 DAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITA----------------QLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH----------------HHHHHHHHTTCCTTHHH
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH----------------HHHHHHHHhhccccHHH
Confidence 7542 35678889999999999999999999999887433 333333 344445558 99999
Q ss_pred HHHHHHHHHHc
Q 038237 152 ALDMFSQMLRA 162 (181)
Q Consensus 152 a~~~~~~m~~~ 162 (181)
|.+.+++..+.
T Consensus 147 A~~~~~~al~~ 157 (568)
T 2vsy_A 147 LSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998875
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.74 E-value=4.7e-07 Score=59.55 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=108.2
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... | +...+..+...+.+.|++++|.+.+++..+ .+...+..+...+...|++++|.+.|++..+
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 568888888765 3 566788899999999999999999998763 4778889999999999999999999999887
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCc
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTV 132 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 132 (181)
.. +.+...+..+...+.+.|++++|...++...+... .+...+..+...+...|+
T Consensus 105 ~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 105 AN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCC
Confidence 63 34677888899999999999999999999988753 356778888888887774
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.74 E-value=1.6e-06 Score=59.63 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=112.3
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSIL 89 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 89 (181)
.|+..+...-..+.+.|++++|.+.|+...+ ++...+..+-..+...|++++|++.|++..+..-. +...+..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888999999999999999998763 67777777888999999999999999999875422 557788899
Q ss_pred HHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
..+...|++++|...++...+.... +...+..+.. .|..+-..+.+.|++++|.+.|++..+. .|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~---------~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAI---------YYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHH---------HHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 9999999999999999999886433 3333333333 3444556677899999999999999874 555
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.74 E-value=9.5e-07 Score=63.82 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=117.3
Q ss_pred ccHHHHhhhcCC---C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYV-LWTTMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 2 ~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m 73 (181)
++|+.+|++... | +...|..+...+.+.|++++|.++|+...+ | +.. .|..+...+.+.|++++|.++|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 567788876543 4 445788899999999999999999998875 3 343 7888888888999999999999998
Q ss_pred HHcCCCccHHHHHHHHHHHH-ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------------
Q 038237 74 QTSNIMGDEFTIVSILTARA-NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------------------- 131 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------------- 131 (181)
.+..- ++...|........ ..|+.+.|..+|+...+... .+...|..+...+.+.|
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 77532 23344433322221 36888899999988877532 25667777777666554
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....|..++..+.+.|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2346888888888899999999999999875
No 58
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.73 E-value=1.3e-07 Score=58.93 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=92.1
Q ss_pred ccHHHHhhhcCC---CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN---KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|+++|+++.. .+...+..+...+.+.|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 467777776643 3566788889999999999999999998863 4677888999999999999999999999987
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
.. +.+...+..+...+.+.|++++|...++.+....
T Consensus 98 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 98 LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 54 2356788889999999999999999999987653
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.72 E-value=1.5e-07 Score=66.28 Aligned_cols=144 Identities=7% Similarity=-0.074 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD--EFTIVSILTA 91 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~ 91 (181)
..+......+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++..+..-.|+ ...|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455666778889999999999988753 3555788888889999999999999999887432222 2347788888
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHH-HHHHHcCChhHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMI-VGLAISGNGDKA 152 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li-~~~~~~~~~~~a 152 (181)
+.+.|++++|...++...+.... +...+..+-..|...| +...|..+. ..+. .+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 88999999999999988876433 5567777777777766 566666666 4444 5588889
Q ss_pred HHHHHHHHHc
Q 038237 153 LDMFSQMLRA 162 (181)
Q Consensus 153 ~~~~~~m~~~ 162 (181)
.+.|++..+.
T Consensus 162 ~~~~~~a~~~ 171 (272)
T 3u4t_A 162 DSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888764
No 60
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=5.8e-07 Score=64.12 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC--------C---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc------CC
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE--------R---DYVLWTTMIDGYLRVNRFREALTLFQEIQTS------NI 78 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 78 (181)
..++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|.+.|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567777777788888888887777653 1 3345667777777788888888887776543 21
Q ss_pred -CccHHHHHHHHHHHHccCCcchHHHHHHHHHHc------CCCc-chHHHHHHHHHhHhcC-------------------
Q 038237 79 -MGDEFTIVSILTARANLGALELGEWIKTYIDKN------KVKN-DIFAGNALIDMYCKCT------------------- 131 (181)
Q Consensus 79 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~------------------- 131 (181)
+.....+..+...+...|++++|...+++..+. +..| ....+..+...|...|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223456777777777888888888777777653 2222 3344555555555444
Q ss_pred -------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 -------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
....+..+...+.+.|++++|.+.+++..+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344677788888889999999999999875
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=1.2e-06 Score=59.79 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=108.6
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHH----------------HHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTT----------------MIDGYLRVNRFREALTLFQEIQTSNIMG 80 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~p 80 (181)
-.....+.+.|++++|...|++..+ | +...|.. +-..+.+.|++++|...|++..+..- -
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~ 86 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-N 86 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-C
Confidence 3344566788999999999998875 3 4445666 78888899999999999999887532 2
Q ss_pred cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----------------ch--HhHHHHHH
Q 038237 81 DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------------VK--FTWTTMIV 141 (181)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------~~--~~~~~li~ 141 (181)
+...+..+-..+...|++++|...|++..+.... +...|..+-..|...+ +. ..+...-.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 5678888888999999999999999999887543 4556666665553332 11 12233344
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 142 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 142 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
++...|++++|...|++..+ ..|+......+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 55668899999999999986 46776655544
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.70 E-value=2e-06 Score=64.29 Aligned_cols=157 Identities=13% Similarity=0.054 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNR-FREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
...|..+-..+.+.|++++|.+.+++... .+..+|+.+-..+...|+ +++|+..|++..+..-. +...|..+-..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 44688888899999999999999998874 477889999999999997 99999999999886433 67889999999
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------chHhHHHHHHHHHH-cCChhHH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------VKFTWTTMIVGLAI-SGNGDKA 152 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~~~~~~~li~~~~~-~~~~~~a 152 (181)
+.+.|++++|...+++.+..... +...|..+-..+.+.| +...|+.+-..+.+ .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999987544 6667777777766655 67888888888888 6665777
Q ss_pred -----HHHHHHHHHcCCCCC-hhhHHHHHh
Q 038237 153 -----LDMFSQMLRASIKPD-EVAYVGVLS 176 (181)
Q Consensus 153 -----~~~~~~m~~~~~~p~-~~t~~~li~ 176 (181)
++.|++.... .|+ ...|+.+-.
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKG 282 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 4777777663 343 444544443
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.69 E-value=3e-06 Score=56.18 Aligned_cols=130 Identities=11% Similarity=0.023 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
++..|..+-..|.+.|++++|++.|++..+..- -+...+..+...+.+.|++++|...+......... +...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 577899999999999999999999999887542 25678889999999999999999999998877544 3344444444
Q ss_pred HhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 126 MYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 126 ~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.+...+ +...+..+-..+.+.|++++|++.|++..+.. +-+...|..+-..+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHH
Confidence 444433 67788999999999999999999999998752 23445555554443
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.63 E-value=2.1e-06 Score=60.25 Aligned_cols=134 Identities=7% Similarity=-0.163 Sum_probs=98.5
Q ss_pred hccCCHHHHHHHhcccCCC-------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 27 INREQVDIARQCFDQMPER-------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
...|++++|.+.|+++.+. +..+|..+...+...|++++|.+.|++..+..- .+...+..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 4568899999999988752 566788999999999999999999999988642 36788999999999999999
Q ss_pred hHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-----------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 100 LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-----------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+|...++...+.... +...+..+...|...| +.......+..+...|++++|...+++....
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999986433 4566666666666655 1112222333334456666666666655543
No 65
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.1e-06 Score=53.88 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...|..+...+.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 46788888999999999999999998863 467789999999999999999999999998754 23677888999999
Q ss_pred HccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
.+.|++++|...++...+.... +...+..+-..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 9999999999999999876433 33344444333
No 66
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=3e-06 Score=56.07 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=93.4
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDG--YLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~ 74 (181)
++|+..|++... | +...+..+...+.+.|++++|...|+.... |+...+ .+... +...+...++.+.|++..
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~~~~~~~~~a~~~~~~al 101 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK-SLIAKLELHQQAAESPELKRLEQEL 101 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHH-HHHHHHHHHhhcccchHHHHHHHHH
Confidence 457777777664 3 455677888888888888888888888765 333322 22211 112222334677777776
Q ss_pred HcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc-chHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHH
Q 038237 75 TSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA 152 (181)
Q Consensus 75 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a 152 (181)
+. .| +...+..+-..+.+.|++++|...+++..+....+ +...+.. +...+...|+.++|
T Consensus 102 ~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~----------------l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 102 AA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT----------------FMDILSALGQGNAI 163 (176)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH----------------HHHHHHHHCSSCHH
T ss_pred Hh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH----------------HHHHHHHhCCCCcH
Confidence 54 24 46777788888888888888888888888765432 2334444 44445559999999
Q ss_pred HHHHHHHHH
Q 038237 153 LDMFSQMLR 161 (181)
Q Consensus 153 ~~~~~~m~~ 161 (181)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 67
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2.6e-06 Score=57.70 Aligned_cols=114 Identities=12% Similarity=0.007 Sum_probs=97.6
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN- 77 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~- 77 (181)
++|++.|++..+|+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..+...|++++|.+.|++..+..
T Consensus 23 ~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 23 KGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 5788999998888999999999999999999999999998763 477889999999999999999999999988743
Q ss_pred -------------CCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 78 -------------IMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 78 -------------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
..| ....+..+...+.+.|++++|...++...+.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 112 22678888899999999999999999998875443
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=1.5e-06 Score=56.13 Aligned_cols=124 Identities=9% Similarity=-0.081 Sum_probs=92.3
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
|+|+..+..... | +...+-.+-..|.+.|++++|.+.|++..+ .+..+|..+-..|.+.|++++|...|++..+
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 567777776655 2 334566788889999999999999998864 4788899999999999999999999999887
Q ss_pred cCCCc-cHHHHHHHHHHHHccCCcchHHHH-HHHHHHcCCCcchHHHHHHHHHhH
Q 038237 76 SNIMG-DEFTIVSILTARANLGALELGEWI-KTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 76 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
.. | +...+..+-..+.+.|+.+++... ++...+..+. +..+|...-..+.
T Consensus 94 ~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 94 LN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLD 145 (150)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred hC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHH
Confidence 53 4 467788888899999998876554 5776665332 4455554444443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.53 E-value=1.7e-06 Score=64.20 Aligned_cols=160 Identities=11% Similarity=-0.004 Sum_probs=117.4
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC-----C----cHHHHHHHHHHHHhcCcHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE-----R----DYVLWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~ 70 (181)
+|++++..... + ...++..+-..+...|++++|.+.|++..+ + ...++..+-..|...|++++|.+.|
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555432 1 234688888999999999999999988763 1 2247888999999999999999999
Q ss_pred HHHHHc----CC-CccHHHHHHHHHHHHccCCcchHHHHHHHHHHc----CCCcchHHHHHHHHHhHhcC----------
Q 038237 71 QEIQTS----NI-MGDEFTIVSILTARANLGALELGEWIKTYIDKN----KVKNDIFAGNALIDMYCKCT---------- 131 (181)
Q Consensus 71 ~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~---------- 131 (181)
++..+. +- +....++..+...+.+.|++++|...+++.... +-+.....+..+-..|...+
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 998762 33 344577889999999999999999999887653 12222223444555554444
Q ss_pred ----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 ----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....+..+-..|.+.|++++|.+.|++..+.
T Consensus 328 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 328 FLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2446778888899999999999999998653
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=2.1e-06 Score=58.93 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=119.5
Q ss_pred ccHHHHhhhcCC----CChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN----KDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
++|++.|++... ++...+..+..++.+.|++++|.+.|+...+ .+...|..+-..+...|++++|.+.|++..
T Consensus 24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 467777776542 5777777789999999999999999998864 366788999999999999999999999988
Q ss_pred HcCCCccH-------HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcc---hHHHHHHHHHhHhcCch-----------
Q 038237 75 TSNIMGDE-------FTIVSILTARANLGALELGEWIKTYIDKNKVKND---IFAGNALIDMYCKCTVK----------- 133 (181)
Q Consensus 75 ~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~----------- 133 (181)
+..- -+. ..|..+-..+...|++++|...++...+. .|+ ...|..+-..|...|..
T Consensus 104 ~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~ 180 (228)
T 4i17_A 104 KAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASS 180 (228)
T ss_dssp HHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTT
T ss_pred HHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7532 133 45777778888999999999999999876 343 45555555555543311
Q ss_pred --HhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 134 --FTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 134 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
..|.... ....+.+++|+..|++..+. .|+......++
T Consensus 181 ~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 181 NKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 1122221 22345568999999999874 46554444433
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.49 E-value=1e-06 Score=70.60 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=109.6
Q ss_pred ccHHHHhhhcC-----------CCChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHH
Q 038237 2 GFTLEIFGTMK-----------NKDVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREAL 67 (181)
Q Consensus 2 ~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~ 67 (181)
++|++.|++.. ..+...+..+..++.+.|++++|.+.|++..+ .+...|..+-..+...|++++|.
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 45677777654 23556788889999999999999999998875 47788999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcC
Q 038237 68 TLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISG 147 (181)
Q Consensus 68 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~ 147 (181)
+.|++..+..- -+...+..+-..+.+.|++++ ...+++..+.... +...|..+-.. +.+.|
T Consensus 488 ~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~----------------~~~~g 548 (681)
T 2pzi_A 488 KHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARA----------------RSAEG 548 (681)
T ss_dssp HHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHH----------------HHHTT
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHH----------------HHHcC
Confidence 99999887542 255778888999999999999 9999998876543 33444444444 44477
Q ss_pred ChhHHHHHHHHHHH
Q 038237 148 NGDKALDMFSQMLR 161 (181)
Q Consensus 148 ~~~~a~~~~~~m~~ 161 (181)
++++|.+.|++..+
T Consensus 549 ~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 549 DRVGAVRTLDEVPP 562 (681)
T ss_dssp CHHHHHHHHHTSCT
T ss_pred CHHHHHHHHHhhcc
Confidence 77777777776654
No 72
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.48 E-value=5.1e-06 Score=53.74 Aligned_cols=130 Identities=12% Similarity=0.002 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...+..+...+.+.|++++|...|+...+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34577788889999999999999998763 478889999999999999999999999988754 23567888888999
Q ss_pred HccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.+.|++++|...+++..+.... +...+..+ .....+.+.|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~--------------~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKY--------------QECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHH--------------HHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999876433 22222111 122224457899999999887653
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.47 E-value=1.1e-05 Score=62.50 Aligned_cols=157 Identities=8% Similarity=0.122 Sum_probs=112.4
Q ss_pred HHHHhhhcCC--C-ChhHHHHHHHHHhc-------cCCHH-------HHHHHhcccCC---C-cHHHHHHHHHHHHhcCc
Q 038237 4 TLEIFGTMKN--K-DVISYTAIVSGYIN-------REQVD-------IARQCFDQMPE---R-DYVLWTTMIDGYLRVNR 62 (181)
Q Consensus 4 a~~~~~~~~~--~-~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~ 62 (181)
+..+|++... | +...|......+.+ .|+++ +|.++|+...+ | +...|..+...+.+.|+
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 3445555443 3 55567777777765 68876 88888888764 3 57788888888888999
Q ss_pred HHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcC--------
Q 038237 63 FREALTLFQEIQTSNIMGDE--FTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCT-------- 131 (181)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~-------- 131 (181)
+++|.++|++..+. .|+. ..|........+.|+++.|..+|+...+.... +.......++... ..|
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHHH
Confidence 99999999998874 4542 47888888888888899999999888775321 1222222223211 112
Q ss_pred ----------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 132 ----------VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 132 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
+...|..++..+.+.|+.++|..+|++....+
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 67888888888889999999999999998863
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.47 E-value=3.2e-06 Score=54.62 Aligned_cols=125 Identities=6% Similarity=-0.153 Sum_probs=93.7
Q ss_pred HHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcch
Q 038237 24 SGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
..+...|++++|.+.++..... +...+-.+-..|.+.|++++|.+.|++..+..- -+...|..+-..+.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence 4455678999999999988764 444666788899999999999999999987542 267889999999999999999
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHH-HHHHHHcCCCCCh
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM-FSQMLRASIKPDE 168 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~p~~ 168 (181)
|...|+...+.... +...|.. +-..|.+.|+.++|.+. +++..+. .|+.
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~----------------la~~~~~~~~~~~aa~~~~~~al~l--~P~~ 133 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLK----------------IAELLCKNDVTDGRAKYWVERAAKL--FPGS 133 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHH----------------HHHHHHHHCSSSSHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHhCCC-CHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHHh--CcCC
Confidence 99999999887433 3334444 44445558998876665 5776653 4543
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.45 E-value=1.9e-05 Score=49.38 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
..+...-..|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...++..++.... +.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~---------- 81 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FI---------- 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hh----------
Confidence 455666677777888888888887776643 225667777777778888888888888777765332 22
Q ss_pred HhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhh
Q 038237 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 170 (181)
Q Consensus 128 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 170 (181)
..|..+-.++...|++++|.+.|++..+. .|+...
T Consensus 82 ------~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 116 (126)
T 4gco_A 82 ------KGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEE 116 (126)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHH
Confidence 23344444555588888888888887763 454443
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.44 E-value=6.5e-06 Score=58.96 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH-HHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV-SILT 90 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~ 90 (181)
+...+..+-..+.+.|++++|.+.|++... .+...+..+...+.+.|++++|.+.+++.... .|+..... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 334455666667777777777777777653 35666777777777777788777777776553 24433222 2222
Q ss_pred HHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 91 ARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+.+.++.+.|...+++....... +...+..+-.. +.+.|++++|++.|++....
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~----------------l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQ----------------LHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHH----------------HHHcccHHHHHHHHHHHHhc
Confidence 244556666666666666655332 33333333333 33466666666666666654
No 77
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=2e-05 Score=48.01 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++...+.... +..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~------- 78 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAE------- 78 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHH-------
Confidence 35678888899999999999999999998753 235678888999999999999999999999876432 333
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+...+.+.|++++|.+.++++.+.
T Consensus 79 ---------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 ---------AWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555566699999999999999875
No 78
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.43 E-value=1.1e-05 Score=58.46 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred HHHHhhhcC---CCChhHHHHHHHHHhccCCHHHHHHHhcccCC-----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 4 TLEIFGTMK---NKDVISYTAIVSGYINREQVDIARQCFDQMPE-----RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 4 a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
|+..|++.. .++..++..+..++...|++++|++++.+-.. .+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455443 24555556777888889999999999888732 3667788888899999999999999999977
Q ss_pred cCCCc-----cHHHHHHHHHHH--HccC--CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHc
Q 038237 76 SNIMG-----DEFTIVSILTAR--ANLG--ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAIS 146 (181)
Q Consensus 76 ~~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~ 146 (181)
. .| +..+..-+..+. ...| +..+|..+|+++.+.. |+..+-..|+. ++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln----------------~~~~~ 224 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN----------------LHLQQ 224 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH----------------HHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH----------------HHHHc
Confidence 5 45 355555566553 3334 8889999999986553 33222222222 45559
Q ss_pred CChhHHHHHHHHHHHc
Q 038237 147 GNGDKALDMFSQMLRA 162 (181)
Q Consensus 147 ~~~~~a~~~~~~m~~~ 162 (181)
|++++|.+.++.+.+.
T Consensus 225 g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSD 240 (310)
T ss_dssp TCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987653
No 79
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=8.6e-07 Score=65.08 Aligned_cols=127 Identities=9% Similarity=-0.007 Sum_probs=99.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RD----------------YVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
+...|..+-..+.+.|++++|.+.|++..+ |+ ..+|..+-..|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455688888999999999999999998863 32 578999999999999999999999999886
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHH-HHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA-LDM 155 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~ 155 (181)
. +.+...|..+-.++...|++++|...|++..+.... +...+..+-..+ .+.|+.++| ...
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~----------------~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ----------------QRIRRQLAREKKL 287 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH----------------HHHHHHHHHHHHH
Confidence 4 236788889999999999999999999999887433 334444444444 446666666 445
Q ss_pred HHHH
Q 038237 156 FSQM 159 (181)
Q Consensus 156 ~~~m 159 (181)
|+.|
T Consensus 288 ~~~~ 291 (336)
T 1p5q_A 288 YANM 291 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.42 E-value=3.4e-05 Score=54.02 Aligned_cols=148 Identities=7% Similarity=-0.089 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-c---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-Ccc-HHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--R-D---YVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGD-EFTI 85 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~ 85 (181)
.+...+-.....+.+.|++++|.+.|+...+ | + ...+..+-..+.+.|++++|...|++..+..- .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777788889999999999999999875 3 3 56788888999999999999999999987531 122 3556
Q ss_pred HHHHHHHHc--------cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH-hcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 86 VSILTARAN--------LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-KCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 86 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
..+-.++.+ .|++++|...|+...+.... +......+..... +......+..+-..|.+.|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 667777777 99999999999999986432 2222222211100 0002223455667788899999999999
Q ss_pred HHHHHc
Q 038237 157 SQMLRA 162 (181)
Q Consensus 157 ~~m~~~ 162 (181)
++..+.
T Consensus 172 ~~~l~~ 177 (261)
T 3qky_A 172 EAVFDA 177 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.42 E-value=1.5e-05 Score=61.75 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=119.2
Q ss_pred cHHHHhhhcCC---C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cH-HHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN---K-DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DY-VLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 3 ~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
+|+.+|++... | +...|..+...+.+.|++++|.++|+.+.+ | +. ..|...+..+.+.|++++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 68888887653 5 466789999999999999999999998864 4 33 478888888889999999999999987
Q ss_pred HcCCCcc-HHHHHHHHHH-HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC------------------c--
Q 038237 75 TSNIMGD-EFTIVSILTA-RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT------------------V-- 132 (181)
Q Consensus 75 ~~~~~p~-~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------------------~-- 132 (181)
+.. |+ ...|...... +...|+.+.|..+|+...+... .+...|..++..+.+.| +
T Consensus 384 ~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 EDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 752 32 2222221111 2358999999999998887632 35677888888776665 2
Q ss_pred --hHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 133 --KFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 133 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
...|...+....+.|+.+.+..+++++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 227888888888899999999999998764
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.41 E-value=2.3e-06 Score=61.40 Aligned_cols=136 Identities=7% Similarity=-0.063 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCCC-----c----HHHHHHHHHHHHhc-CcHHHHHHHHHHHHHcC----CCcc
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPER-----D----YVLWTTMIDGYLRV-NRFREALTLFQEIQTSN----IMGD 81 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~----~~p~ 81 (181)
..+|+.+-.+|.+.|++++|...+++..+- + ..+++.+-..|... |++++|+..|++..+.. -.+.
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 457888889999999999998888877631 1 34788888888886 99999999998876521 1111
Q ss_pred -HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 82 -EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 82 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
..++..+...+.+.|++++|...++...+.........|. ....|..+..++...|++++|...|++..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS----------LKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG----------HHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888888999999999999999988764432221110 01133445555666888999988888876
Q ss_pred H
Q 038237 161 R 161 (181)
Q Consensus 161 ~ 161 (181)
+
T Consensus 227 ~ 227 (292)
T 1qqe_A 227 S 227 (292)
T ss_dssp C
T ss_pred h
Confidence 5
No 83
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=6.7e-06 Score=51.02 Aligned_cols=111 Identities=9% Similarity=-0.056 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...|..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++..+..- .+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 455688889999999999999999998764 3778899999999999999999999999887532 356788889999
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
+.+.|++++|...+++..+.... +...+..+-..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 128 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCM 128 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 99999999999999998876432 334444444443
No 84
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.41 E-value=1.1e-05 Score=53.93 Aligned_cols=149 Identities=10% Similarity=-0.077 Sum_probs=105.5
Q ss_pred ccHHH---HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCC------C---cHHHHHHHHHHHHhcCcHHHHHHH
Q 038237 2 GFTLE---IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPE------R---DYVLWTTMIDGYLRVNRFREALTL 69 (181)
Q Consensus 2 ~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~---~~~~~~~li~~~~~~~~~~~a~~~ 69 (181)
++|++ ++..-+......+..+-..+...|++++|...+++... . ...++..+-..+...|++++|.+.
T Consensus 9 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666 55443323556788888999999999999999888764 1 445678888899999999999999
Q ss_pred HHHHHHc----CCCc--cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC-CcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 70 FQEIQTS----NIMG--DEFTIVSILTARANLGALELGEWIKTYIDKNKV-KNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 70 ~~~m~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
+++..+. +-.| ....+..+-..+...|++++|...+++...... ..+.... ..++..+-..
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~la~~ 156 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI------------ACAFRGLGDL 156 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH------------HHHHHHHHHH
Confidence 9887553 2112 235577788888899999999999988775311 1111110 1234556667
Q ss_pred HHHcCChhHHHHHHHHHHHc
Q 038237 143 LAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.+.|++++|.+.+++..+.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHH
Confidence 77799999999999888654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.41 E-value=1.9e-05 Score=63.70 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
+..+|+.|-..+.+.|++++|++.|++..+.. | +...|..+-..+.+.|++++|...|++..+.... +...|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 46689999999999999999999999988753 4 4688999999999999999999999999887543 567788888
Q ss_pred HHhHhcC------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHhh
Q 038237 125 DMYCKCT------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSA 177 (181)
Q Consensus 125 ~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~ 177 (181)
..|.+.| +...|+.+-..|.+.|++++|++.|++..+. .|+ ...+..+...
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhH
Confidence 8887776 7888999999999999999999999999874 454 3444444433
No 86
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.40 E-value=2.7e-05 Score=66.42 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=102.9
Q ss_pred cHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccH
Q 038237 3 FTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 82 (181)
+|.++.++. -++.+|..+-.++.+.|++++|.+-|... .|...|..++..+.+.|++++|.+.|..-.+.. ++.
T Consensus 1094 rAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1094 RAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred HHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 344444433 23556778888888888888888888553 667777778888888888888888887655543 333
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------chHhHHHHHHHHHHcCChhHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------VKFTWTTMIVGLAISGNGDKA 152 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~li~~~~~~~~~~~a 152 (181)
...+.+..+|++.+++++.... ++ .++...|..+-..|-..| ....|..+...|.+.|+++.|
T Consensus 1168 ~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHH
Confidence 2333477777777776643333 22 234444555555554444 466888999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 153 LDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 153 ~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.+.+++.. |..+|.-+-.+|
T Consensus 1241 IEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1241 VDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHhC------CHHHHHHHHHHH
Confidence 99998773 456665444333
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.39 E-value=1.4e-05 Score=59.19 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=115.2
Q ss_pred cHHHHhhhcCCC---ChhHHHHHHHHHhccCCHHHHHHHhcccCC-----C----cHHHHHHHHHHHHhcCcHHHHHHHH
Q 038237 3 FTLEIFGTMKNK---DVISYTAIVSGYINREQVDIARQCFDQMPE-----R----DYVLWTTMIDGYLRVNRFREALTLF 70 (181)
Q Consensus 3 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~ 70 (181)
+|++++...... ...+++.+-..+.+.|++++|.+.|++..+ + ...++..+-..|...|++++|.+.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555554431 234678888999999999999999987763 1 2346888888999999999999999
Q ss_pred HHHHH----cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC----CcchHHHHHHHHHhHhcC-----------
Q 038237 71 QEIQT----SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV----KNDIFAGNALIDMYCKCT----------- 131 (181)
Q Consensus 71 ~~m~~----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~----------- 131 (181)
++..+ .+-+....++..+...+.+.|++++|...+++..+... +.....+..+-..|...+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99876 12233367788899999999999999999998887522 222233344433443333
Q ss_pred ---------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 ---------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
....+..+-..|.+.|++++|.+.|++..+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233566788888999999999999998864
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.39 E-value=2.6e-06 Score=56.21 Aligned_cols=118 Identities=9% Similarity=0.108 Sum_probs=77.7
Q ss_pred hccCCHHHHHHHhcccC---CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHccCCc--ch
Q 038237 27 INREQVDIARQCFDQMP---ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA-RANLGAL--EL 100 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~--~~ 100 (181)
...|++++|...++... ..+...|..+-..|...|++++|...|++..+..- .+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 45566677766666554 24667788888888888888888888888776431 245566666666 6677887 88
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|...++........ +... |..+...+.+.|++++|.+.|++..+.
T Consensus 100 A~~~~~~al~~~p~-~~~~----------------~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITA----------------LMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHH----------------HHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888776432 2222 333444455588888888888888765
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.39 E-value=1.1e-05 Score=56.56 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=100.1
Q ss_pred hccCCHHHHHHHhcccCC-------C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc------CC-CccHHHHHHH
Q 038237 27 INREQVDIARQCFDQMPE-------R----DYVLWTTMIDGYLRVNRFREALTLFQEIQTS------NI-MGDEFTIVSI 88 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~l 88 (181)
...|++++|.+.|++..+ + ...++..+-..+...|++++|...|++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345555555555555432 2 4567888999999999999999999998754 22 2345778899
Q ss_pred HHHHHccCCcchHHHHHHHHHHc------CC-CcchHHHHHHHHHhHhcC--------------------------chHh
Q 038237 89 LTARANLGALELGEWIKTYIDKN------KV-KNDIFAGNALIDMYCKCT--------------------------VKFT 135 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~--------------------------~~~~ 135 (181)
...+...|++++|...+++.... .. +.....+..+...|...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 234556666666666655 3556
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+..+...+.+.|++++|.+.+++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888888999999999999988753
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.38 E-value=4.9e-06 Score=58.39 Aligned_cols=153 Identities=9% Similarity=0.029 Sum_probs=107.0
Q ss_pred ccHHHHhhhcCC--CC----hhHHHHHHHHHhccCCHHHHHHHhcccCC--C----cHHHHHHHHHHHHh--------cC
Q 038237 2 GFTLEIFGTMKN--KD----VISYTAIVSGYINREQVDIARQCFDQMPE--R----DYVLWTTMIDGYLR--------VN 61 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~--------~~ 61 (181)
++|++.|++... |+ ...+..+..++.+.|++++|...|+...+ | ...++..+-..+.+ .|
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 567888887764 54 45688888999999999999999999864 3 24456677778888 99
Q ss_pred cHHHHHHHHHHHHHcCCCccH-HHH-----------------HHHHHHHHccCCcchHHHHHHHHHHcCCCc--chHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDE-FTI-----------------VSILTARANLGALELGEWIKTYIDKNKVKN--DIFAGN 121 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 121 (181)
++++|...|++..+.. |+. ... ..+-..+.+.|++++|...++...+..... ....+.
T Consensus 112 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp HHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 9999999999988753 332 222 455777889999999999999998864332 223344
Q ss_pred HHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 122 ~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+..+|...|+.... ..+.|++++|...|++..+.
T Consensus 190 ~l~~~~~~~g~~~~~------~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 190 GAMRAYIAYAEQSVR------ARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchh------hcccchHHHHHHHHHHHHHH
Confidence 444444331100000 00238889999999999875
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.38 E-value=2.5e-06 Score=61.72 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=98.2
Q ss_pred ccHHHHhhhcCC--C---ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-----cHHHHHHHHHHH--HhcC--cHHH
Q 038237 2 GFTLEIFGTMKN--K---DVISYTAIVSGYINREQVDIARQCFDQMPE--R-----DYVLWTTMIDGY--LRVN--RFRE 65 (181)
Q Consensus 2 ~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-----~~~~~~~li~~~--~~~~--~~~~ 65 (181)
++|++++.+... | +...+..++..+.+.|+.+.|.+.++.|.+ | +..+...|..++ ...| +..+
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHH
Confidence 678888887733 2 455688899999999999999999999975 4 245555666563 3334 8999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC---------CCcchHHHHHHHHHhHhcCchHhH
Q 038237 66 ALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK---------VKNDIFAGNALIDMYCKCTVKFTW 136 (181)
Q Consensus 66 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~~~~~~~~~ 136 (181)
|+.+|+++... .|+..+-..++.++.+.|++++|+..++.+.+.- -+-+..+.-.++....
T Consensus 197 A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~-------- 266 (310)
T 3mv2_B 197 NFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLAL-------- 266 (310)
T ss_dssp HHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHH--------
Confidence 99999998765 3553344455558999999999999999776531 0224444323322222
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..|+ +|.++++++++.
T Consensus 267 --------~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 267 --------MQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp --------HTTC--TTHHHHHHHHHT
T ss_pred --------HhCh--HHHHHHHHHHHh
Confidence 2454 788888888874
No 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=1.1e-05 Score=49.71 Aligned_cols=112 Identities=8% Similarity=-0.053 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...+..+...+...|++++|.+.|+.... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 455788888999999999999999998763 477888999999999999999999999988753 2356788888899
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
+.+.|++++|...++...+.... +...+..+...+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAEL 125 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHH
Confidence 99999999999999999887433 3444444444443
No 93
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=7.4e-06 Score=49.14 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG--DEFTIVSIL 89 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~ 89 (181)
+...+..+...+.+.|++++|...|+...+ .+...|..+...+...|++++|.+.|++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 455678888899999999999999998763 467788899999999999999999999998753 22 478888999
Q ss_pred HHHHcc-CCcchHHHHHHHHHHcCCC
Q 038237 90 TARANL-GALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 90 ~~~~~~-~~~~~a~~~~~~~~~~~~~ 114 (181)
..+.+. |++++|...++........
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999 9999999999999887543
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=1.3e-05 Score=50.12 Aligned_cols=96 Identities=6% Similarity=-0.006 Sum_probs=83.8
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..+...-..+.+.|++++|.+.|++..+ .+...|..+-..+.+.|++++|++.|++..+..- .+...|..+-.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 3577888899999999999999998763 4788999999999999999999999999887542 35678889999999
Q ss_pred ccCCcchHHHHHHHHHHcCC
Q 038237 94 NLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~ 113 (181)
..|++++|...|+...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999988743
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.35 E-value=3.8e-05 Score=50.63 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=95.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA-RA 93 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 93 (181)
.+......+.+.|++++|...|++..+ .+...+..+-..+.+.|++++|...|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 355667788899999999999999885 47788999999999999999999999997654 2444333222111 12
Q ss_pred ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-ChhhHH
Q 038237 94 NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP-DEVAYV 172 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~ 172 (181)
+.+....+...++...+.... +...+..+-..+.+.|++++|.+.|++..+..-.+ +...+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-----------------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 223334466666666654322 23344445555666999999999999998764322 244555
Q ss_pred HHHhhh
Q 038237 173 GVLSAR 178 (181)
Q Consensus 173 ~li~~~ 178 (181)
.+...+
T Consensus 149 ~l~~~~ 154 (176)
T 2r5s_A 149 TFMDIL 154 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 96
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.34 E-value=4e-06 Score=54.42 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...+..+-..+.+.|++++|.+.|+.... .+...|..+-..+...|++++|++.|++..+..- -+...|..+-.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 444677888899999999999999999874 4788899999999999999999999999987542 246788889999
Q ss_pred HHccCCcchHHHHHHHHHHcCCC
Q 038237 92 RANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+.+.|++++|...|+...+....
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987533
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.33 E-value=2e-05 Score=51.06 Aligned_cols=127 Identities=12% Similarity=-0.019 Sum_probs=92.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA 97 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 97 (181)
+...+.+.+...+.+.++.++ ...+...+..+-..+.+.|++++|.+.|++.....- -+...|..+-.++.+.|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcc
Confidence 345555555544433332221 113566788888899999999999999999988642 367888899999999999
Q ss_pred cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 98 LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
+++|...|++....... +...| ..+-.+|.+.|++++|.+.|++..+.. ||.
T Consensus 86 ~~~Ai~~~~~al~l~P~-~~~~~----------------~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKN-DYTPV----------------FHTGQCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHHHHHHHHHHSSS-CCHHH----------------HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHHhhCCC-CcHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 99999999999987544 33333 444455555999999999999998853 554
No 98
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.32 E-value=3e-05 Score=66.09 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=92.2
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccC------------------------------CCcHHHHH
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMP------------------------------ERDYVLWT 51 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------------------------------~~~~~~~~ 51 (181)
++|.+-|.+. .|...|.-++.++.+.|++++|.+.+...+ .++...|.
T Consensus 1122 kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~ 1199 (1630)
T 1xi4_A 1122 KEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ 1199 (1630)
T ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHH
Confidence 3555556543 344456667777777777777777775432 22334444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+-..|-..|++++|..+|... ..|..+...+.+.|++++|.+.+++- .+..+|.-+-.+|...+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 5555555556666666666653 36667777777777777777766655 24456665555554333
Q ss_pred --------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 --------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+..++..|-+.|.+++|..+++.-...
T Consensus 1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4556778888999999999999999877644
No 99
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.30 E-value=3.8e-06 Score=62.57 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----C-CCccHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTS----N-IMGDEF 83 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~ 83 (181)
.|..+...+...|++++|.+.+++..+ ....++..+-..|...|++++|.+.|++..+. + ......
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 466666777777777777777666542 13345666666667777777777776665432 1 111234
Q ss_pred HHHHHHHHHHccCC-----------------cchHHHHHHHHHHc----CCC-cchHHHHHHHHHhHhcC----------
Q 038237 84 TIVSILTARANLGA-----------------LELGEWIKTYIDKN----KVK-NDIFAGNALIDMYCKCT---------- 131 (181)
Q Consensus 84 ~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~---------- 131 (181)
++..+...+...|+ +++|...+++..+. +.. .....+..+-..|...|
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 55556666666666 66666665554331 111 12223444444444444
Q ss_pred --------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 --------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 --------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
....|..+...+...|++++|.+.+++...
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 122555566666666666666666666543
No 100
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.7e-05 Score=51.08 Aligned_cols=93 Identities=9% Similarity=-0.014 Sum_probs=49.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+..+-..+.+.|++++|...|+.... .+...|..+-..+...|++++|.+.|++.....- -+...+..+-.++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 344445555555666666665555432 2445555555555555666666666655554321 133445555555555
Q ss_pred cCCcchHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKN 111 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~ 111 (181)
.|++++|...|+...+.
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 56666665555555543
No 101
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=2.7e-05 Score=46.99 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
...+..+...+.+.|++++|.+.|+.... .+...+..+...+...|++++|...+++..+..- .+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 45677888899999999999999998763 4778888899999999999999999999887532 3567888889999
Q ss_pred HccCCcchHHHHHHHHHHcCC
Q 038237 93 ANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~ 113 (181)
...|++++|...++...+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887643
No 102
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.27 E-value=6.1e-06 Score=59.12 Aligned_cols=160 Identities=10% Similarity=0.012 Sum_probs=91.2
Q ss_pred ccHHHHhhhcCC--CC-----hhHHHHHHHHHhccCCHHHHHHHhcccCC---------CcHHHHHHHHHHHHhcCcHHH
Q 038237 2 GFTLEIFGTMKN--KD-----VISYTAIVSGYINREQVDIARQCFDQMPE---------RDYVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~ 65 (181)
++|+++|++..+ |+ ...+..+...+...|++++|.+.+++... .....+..+...+...|++++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 355566655432 32 24566777777788888888877776542 124456666777777777777
Q ss_pred HHHHHHHHHHcCC-Ccc----HHHHHHHHHHHHccCC--------------------cchHHHHHHHHHHc----CCCc-
Q 038237 66 ALTLFQEIQTSNI-MGD----EFTIVSILTARANLGA--------------------LELGEWIKTYIDKN----KVKN- 115 (181)
Q Consensus 66 a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~- 115 (181)
|.+.+++..+..- .++ ..++..+...+...|+ +++|...+++.... +..+
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 7777776543210 011 2356666666666677 66666666654432 1111
Q ss_pred chHHHHHHHHHhHhcC------------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 116 DIFAGNALIDMYCKCT------------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 116 ~~~~~~~ll~~~~~~~------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
....+..+...+...| ....+..+...+...|++++|.+.+++...
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223444444444433 122566666666666777777666666553
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.26 E-value=0.00014 Score=51.98 Aligned_cols=139 Identities=9% Similarity=-0.044 Sum_probs=88.2
Q ss_pred HHHHHhccCCHHHHHHHhcccCC-----Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-cc----HHHHHH
Q 038237 22 IVSGYINREQVDIARQCFDQMPE-----RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-GD----EFTIVS 87 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 87 (181)
.+..+.+.|++++|.+++++... ++ ...+..+...+...+++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 36677888999999888887654 12 112334566666777889999999888773322 22 236788
Q ss_pred HHHHHHccCCcchHHHHHHHHHHc-----CCCc-chHHHHHHHHHhHhcC------------------------chHhHH
Q 038237 88 ILTARANLGALELGEWIKTYIDKN-----KVKN-DIFAGNALIDMYCKCT------------------------VKFTWT 137 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~~------------------------~~~~~~ 137 (181)
+-..+...|++++|...+++..+. +..+ ...++..+-..|.+.| -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888899999999888887742 1111 1224555555555544 134555
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHH
Q 038237 138 TMIVGLAISGN-GDKALDMFSQML 160 (181)
Q Consensus 138 ~li~~~~~~~~-~~~a~~~~~~m~ 160 (181)
.+-..+.+.|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666666663 466666666554
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.26 E-value=3.1e-05 Score=60.58 Aligned_cols=130 Identities=9% Similarity=0.001 Sum_probs=87.5
Q ss_pred cCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHH
Q 038237 29 REQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIK 105 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 105 (181)
.|++++|.+.|++..+ .+...|..+-..+.+.|++++|.+.|++..+..- -+...+..+-..+.+.|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 3678899999999999999999999999887532 25678889999999999999999999
Q ss_pred HHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 106 TYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
++..+.... +.. .|..+-..+.+.|++++|.+.|++..+.. +-+...+..+...
T Consensus 81 ~~al~~~p~-~~~----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 81 QQASDAAPE-HPG----------------IALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNW 134 (568)
T ss_dssp HHHHHHCTT-CHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhcCCC-CHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999886432 233 34445555666999999999999998752 1234455544443
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=3.3e-05 Score=48.32 Aligned_cols=115 Identities=6% Similarity=-0.097 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
..++..+-..+.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...++..++.... +...+..+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~- 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAK- 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHH-
Confidence 3456777888899999999999999987753 224677888889999999999999999888764211 1111222222
Q ss_pred hHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 127 YCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 127 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
+|..+-..+...|++++|.+.|++.... .||..+...|
T Consensus 85 --------~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 85 --------AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 3445666677799999999999998764 5676665544
No 106
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=6.8e-05 Score=47.29 Aligned_cols=97 Identities=14% Similarity=0.018 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSI 88 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 88 (181)
+...+..+...+.+.|++++|.+.|++..+ |+ ...|..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 556788888999999999999999998865 44 6778888899999999999999999987753 2256778888
Q ss_pred HHHHHccCCcchHHHHHHHHHHcC
Q 038237 89 LTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
...+...|++++|...+++.....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 899999999999999999998764
No 107
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.24 E-value=9.4e-06 Score=60.38 Aligned_cols=147 Identities=10% Similarity=-0.030 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCCC---------cHHHHHHHHHHHHhcCc-----------------HHHHHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPER---------DYVLWTTMIDGYLRVNR-----------------FREALTL 69 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~-----------------~~~a~~~ 69 (181)
...+..+...+...|++++|.+.+++...- ...++..+-..|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345777777788888888888887776531 33466677777777788 7888877
Q ss_pred HHHHHHc----CCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-----cchHHHHHHHHHhHhcC--------
Q 038237 70 FQEIQTS----NIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVK-----NDIFAGNALIDMYCKCT-------- 131 (181)
Q Consensus 70 ~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~-------- 131 (181)
+++..+. +-.| ....+..+...+...|++++|...+++..+.... .....+..+...|...|
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765431 1111 2246667777777888888888877776653111 11224555555565555
Q ss_pred ----------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 ----------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 ----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....+..+...+.+.|++++|.+.+++....
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2456777777788888888888888877643
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.23 E-value=5.2e-05 Score=51.70 Aligned_cols=108 Identities=7% Similarity=-0.003 Sum_probs=87.0
Q ss_pred ccHHHHhhhcCC-CChhHHHHHHHHHhccCCHHHHHHHhcccCC-CcHHHHHHHHHHHHhcC----cHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLRVN----RFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~ 75 (181)
.+|++.|.+.-+ -++..+..+-..+.+.+++++|.+.|+...+ .++..+..|-..|.. + ++++|++.|++..+
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 467777877654 5777888888999999999999999998875 467777777777777 6 89999999999987
Q ss_pred cCCCccHHHHHHHHHHHHc----cCCcchHHHHHHHHHHcCC
Q 038237 76 SNIMGDEFTIVSILTARAN----LGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 113 (181)
.| +...+..+-..+.. .+++++|...++...+.|.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 65 55666677777766 7899999999999887765
No 109
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=0.00013 Score=44.72 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
+...+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...++........ +..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~------- 81 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSK------- 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHH-------
Confidence 55677888889999999999999999988753 236778888899999999999999999998876432 233
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
.|..+...+.+.|++++|.+.|++..+.. +.+...+..+...
T Consensus 82 ---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 82 ---------AYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIA 123 (131)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHH
Confidence 33444555666999999999999998762 2244455444443
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.8e-05 Score=45.83 Aligned_cols=62 Identities=11% Similarity=-0.052 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|++++|...++...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444455555566666666665555432 123455555555556666666666666555554
No 111
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=6.4e-05 Score=44.87 Aligned_cols=101 Identities=11% Similarity=-0.096 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALI 124 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll 124 (181)
+...+..+...+.+.|++++|...|++..+..- .+...+..+...+...|++++|...+++..+.... .+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---- 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW---- 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH----
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH----
Confidence 455677788889999999999999999887542 35677888899999999999999999999876322 023333
Q ss_pred HHhHhcCchHhHHHHHHHHHHc-CChhHHHHHHHHHHHcC
Q 038237 125 DMYCKCTVKFTWTTMIVGLAIS-GNGDKALDMFSQMLRAS 163 (181)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~ 163 (181)
..+...+.+. |++++|.+.+++.....
T Consensus 80 ------------~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 ------------AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ------------HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ------------HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 3444455559 99999999999998763
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=0.00019 Score=43.05 Aligned_cols=99 Identities=12% Similarity=-0.021 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
....+..+...+...|++++|.+.|++..... +.+...+..+...+.+.|++++|...++...+.... +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~------- 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGK------- 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHH-------
Confidence 34567788889999999999999999988753 236778888889999999999999999998876432 233
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+...+.+.|++++|.+.+++..+.
T Consensus 74 ---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 74 ---------GYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3444555566699999999999998864
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.19 E-value=3.5e-05 Score=52.94 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=78.0
Q ss_pred ccHHHHhhhcCC--CC----hhHHHHHHHHHhccCCHHHHHHHhcccCC--CcH----HHHHHHHHHHH-----------
Q 038237 2 GFTLEIFGTMKN--KD----VISYTAIVSGYINREQVDIARQCFDQMPE--RDY----VLWTTMIDGYL----------- 58 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~----------- 58 (181)
++|++.|++... |+ ...+..+..++.+.|++++|...|+...+ |+. .++-.+-..+.
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 345555555432 32 13455556666666666666666666542 211 12222222222
Q ss_pred -------hcCcHHHHHHHHHHHHHcCCCccHH-HH-----------------HHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 59 -------RVNRFREALTLFQEIQTSNIMGDEF-TI-----------------VSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 59 -------~~~~~~~a~~~~~~m~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
..|++++|...|++..+.. |+.. .+ ..+...+.+.|++++|...++.+.+...
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 2356666666666665532 2221 11 1223345556666666666666665422
Q ss_pred CcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 114 KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
. ... ....+..+..++.+.|+.++|.+.++.+...
T Consensus 179 ~--~~~------------~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 179 D--TQA------------TRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp T--SHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred C--CCc------------cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 2 100 1124455666777799999999999998876
No 114
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.19 E-value=2.4e-05 Score=57.90 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-----C-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-c
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-----R-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-D 81 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 81 (181)
.++..+-..+...|+++.|...+++... + ...+++.+-..|...|++++|.+.|++..+. +-.+ .
T Consensus 142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4577778888888888888777776642 1 2446777888888889999999888876542 1111 2
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHcC---CCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKNK---VKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
..++..+-..+...|++++|...+++..... ..|. ...++..+-..+.+.|++++|.+.+++
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---------------LPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG---------------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh---------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3467777788888899999988888877621 0111 122344555666679999999999999
Q ss_pred HHHc
Q 038237 159 MLRA 162 (181)
Q Consensus 159 m~~~ 162 (181)
..+.
T Consensus 287 al~~ 290 (378)
T 3q15_A 287 GLDH 290 (378)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 115
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.18 E-value=1.2e-05 Score=59.45 Aligned_cols=146 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC-----Cc----HHHHHHHHHHHHhcCc--------------------HHHH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE-----RD----YVLWTTMIDGYLRVNR--------------------FREA 66 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 66 (181)
..++..+...+...|++++|...+++... ++ ..++..+-..+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 33566667777777787777777776653 11 3356666677777777 7777
Q ss_pred HHHHHHHHHc----CCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC-Cc----chHHHHHHHHHhHhcC-----
Q 038237 67 LTLFQEIQTS----NIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKV-KN----DIFAGNALIDMYCKCT----- 131 (181)
Q Consensus 67 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~----- 131 (181)
.+.+++.... +-.| ...++..+...+...|++++|...+++..+... .+ ....+..+...|...|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665431 1111 124566666777777777777777776654311 11 1224555555555544
Q ss_pred -------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 -------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 -------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
...++..+...+.+.|++++|.+.+++..+
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 144566666677777777777777776654
No 116
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=0.00012 Score=45.75 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...|..+...+.+.|++++|...|+.... .+...|..+...+...|++++|...|++..+..- -+...+..+-..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 344455555555555555555555554432 2344555555555555555555555555544321 133444555555
Q ss_pred HHccCCcchHHHHHHHHHH
Q 038237 92 RANLGALELGEWIKTYIDK 110 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~ 110 (181)
+...|++++|...++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=1.3e-05 Score=52.82 Aligned_cols=111 Identities=5% Similarity=0.040 Sum_probs=90.4
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHH-HHhcCcH--HHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDG-YLRVNRF--REALTLFQE 72 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~ 72 (181)
++|++.|++... | +...|..+...+...|++++|...|+...+ .+...+..+... +...|++ ++|...|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456666665432 3 567889999999999999999999998874 467778888888 7788998 999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
..+..- -+...+..+...+...|++++|...++...+...
T Consensus 107 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 107 ALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 987642 2467788888999999999999999999988743
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=7.9e-05 Score=47.29 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=49.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
+..+-..+.+.|++++|.+.|+.... .+...|..+-..+.+.|++++|...|++.....- -+...+..+-.++...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 44444555556666666666655432 2445555555555666666666666665554321 1334445555555566
Q ss_pred CCcchHHHHHHHHHHc
Q 038237 96 GALELGEWIKTYIDKN 111 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~ 111 (181)
|++++|...++...+.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666555543
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=7e-05 Score=46.23 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.... +..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~------ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIK------ 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHH------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chH------
Confidence 366788889999999999999999999988753 236788888999999999999999999999876432 233
Q ss_pred HHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+...+.+.|++++|.+.|++..+.
T Consensus 86 ----------~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 ----------GYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3444555566699999999999998875
No 120
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.18 E-value=1e-05 Score=61.37 Aligned_cols=41 Identities=7% Similarity=0.017 Sum_probs=16.7
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChhhHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYV 172 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~ 172 (181)
+..+|+.+-..|...|++++|.+.|++..+.+ ..|++.+|.
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 67788889899999999999999999998763 567766653
No 121
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=3.3e-05 Score=48.35 Aligned_cols=86 Identities=8% Similarity=-0.163 Sum_probs=70.7
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 44 ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 44 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
..+...|..+-..+...|++++|...|.+.....- .+...+..+...+...|++++|...++...+.... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 34677888888999999999999999999877542 35678888899999999999999999999887543 56678888
Q ss_pred HHHhHhcC
Q 038237 124 IDMYCKCT 131 (181)
Q Consensus 124 l~~~~~~~ 131 (181)
-..|...|
T Consensus 84 ~~~~~~~~ 91 (137)
T 3q49_B 84 GQCQLEME 91 (137)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888777
No 122
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.17 E-value=1.2e-05 Score=57.55 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=93.6
Q ss_pred HHHHHHHHHhccCC--------------------HHHHHHHhcccCC-----C----cHHHHHHHHHHHHhcCcHHHHHH
Q 038237 18 SYTAIVSGYINREQ--------------------VDIARQCFDQMPE-----R----DYVLWTTMIDGYLRVNRFREALT 68 (181)
Q Consensus 18 ~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~ 68 (181)
++..+...+...|+ +++|.+.+++... + ....+..+...+...|++++|.+
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 57777777888888 7888777776542 1 23467777778888888888888
Q ss_pred HHHHHHHc----CCC-ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC----Cc-chHHHHHHHHHhHhcC-------
Q 038237 69 LFQEIQTS----NIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNKV----KN-DIFAGNALIDMYCKCT------- 131 (181)
Q Consensus 69 ~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~ll~~~~~~~------- 131 (181)
.+++..+. +-. ....++..+...+...|++++|...++....... .+ ...++..+...|...|
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88876542 111 1123677777778888888888888877664311 11 1334444444554444
Q ss_pred -----------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 -----------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 -----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
...++..+...+.+.|++++|.+.+++..+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1335666677777777888887777777653
No 123
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.17 E-value=0.00031 Score=53.14 Aligned_cols=145 Identities=11% Similarity=-0.016 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC-----------CcHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCCcc
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE-----------RDYVLWTTMIDGYLRV--NRFREALTLFQEIQTSNIMGD 81 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~ 81 (181)
...+|+.+-..|...|++++|...+++..+ ....++..+-.++.+. +++++|.+.|++..+.. |+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~ 170 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PK 170 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CC
Confidence 345799999999999999999988876642 1345666665556554 57999999999987753 44
Q ss_pred -HHHHHHHHHH---HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC----------------------chHh
Q 038237 82 -EFTIVSILTA---RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT----------------------VKFT 135 (181)
Q Consensus 82 -~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~ 135 (181)
...+..+..+ +...++.++|...+++..+.... +...+..+...+...+ +...
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 3333333333 45567888899988888776433 3444444443333222 6777
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
++.+...|.+.|++++|.+.+++..+.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 889999999999999999999999875
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=5e-05 Score=48.82 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
+...+..+-..+.+.|++++|...|++.....- .+...|..+-.++.+.|++++|...++........ +...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 556677788889999999999999999877532 36778888889999999999999999999887543 5667777777
Q ss_pred HhHhcCc
Q 038237 126 MYCKCTV 132 (181)
Q Consensus 126 ~~~~~~~ 132 (181)
.|...|+
T Consensus 98 ~~~~~g~ 104 (148)
T 2vgx_A 98 CLLQXGE 104 (148)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8877773
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=5.5e-05 Score=49.16 Aligned_cols=97 Identities=7% Similarity=-0.052 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...|..+-..+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|+..|++..+..- -+...|..+-.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 455688888999999999999999998874 4788899999999999999999999999987642 257888899999
Q ss_pred HHccCCcchHHHHHHHHHHcC
Q 038237 92 RANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+.+.|++++|...|++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=4.3e-05 Score=47.27 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..|...-..+.+.|++++|.+.|++..+ .+...|..+-..+.+.|++++|++.|++..+..- -+...|..+-.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 4577778889999999999999998764 4788999999999999999999999999887542 25678888999999
Q ss_pred ccCCcchHHHHHHHHHHcC
Q 038237 94 NLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~ 112 (181)
..|++++|...++...+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
No 127
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.17 E-value=3.2e-05 Score=57.27 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-----C-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-c
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-----R-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-D 81 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 81 (181)
.+|..+-..+...|++++|.+.+++..+ + ...+++.+-..|...|++++|.+.|++..+. +-.+ .
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4577778888888888888877777652 1 2346777778888888888888888876542 1111 1
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHc----CC-CcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKN----KV-KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
..++..+-..+...|++++|...+++..+. +. +.... ++..+-..+.+.|++++|.+.+
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ----------------AYFLITQIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH----------------HHHHHHHHHHHCCCHHHHHHHH
Confidence 246777788888888888888888877762 22 21222 3444555556688888888888
Q ss_pred HHHHH
Q 038237 157 SQMLR 161 (181)
Q Consensus 157 ~~m~~ 161 (181)
++..+
T Consensus 288 ~~al~ 292 (383)
T 3ulq_A 288 SKGMA 292 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 128
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.16 E-value=1.8e-05 Score=58.46 Aligned_cols=161 Identities=10% Similarity=0.006 Sum_probs=114.2
Q ss_pred ccHHHHhhhcCC--CC-----hhHHHHHHHHHhccCCHHHHHHHhcccCC---------CcHHHHHHHHHHHHhcCcHHH
Q 038237 2 GFTLEIFGTMKN--KD-----VISYTAIVSGYINREQVDIARQCFDQMPE---------RDYVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~ 65 (181)
++|+..|++... |+ ...|..+...+...|++++|...+++... ....++..+...+...|++++
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 456666665543 33 24677888899999999999998887642 134567788888999999999
Q ss_pred HHHHHHHHHHcCC-Ccc----HHHHHHHHHHHHccCC--------------------cchHHHHHHHHHHc----CCCc-
Q 038237 66 ALTLFQEIQTSNI-MGD----EFTIVSILTARANLGA--------------------LELGEWIKTYIDKN----KVKN- 115 (181)
Q Consensus 66 a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~- 115 (181)
|...+++..+..- .++ ..++..+...+...|+ +++|...++..... +..|
T Consensus 106 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 185 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA 185 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence 9999988764210 012 3477788888888899 88888888776542 2111
Q ss_pred chHHHHHHHHHhHhcC------------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 116 DIFAGNALIDMYCKCT------------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 116 ~~~~~~~ll~~~~~~~------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....+..+-..|...| ....|..+...+...|++++|.+.+++....
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2335556666666555 2337888888899999999999999988653
No 129
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.16 E-value=8.9e-05 Score=53.00 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=80.5
Q ss_pred HHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 33 DIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 33 ~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+...+.++.....+...+-.+-..+.+.|++++|.+.|++..+..- -+...+..+...+.+.|++++|...++......
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 4444555555545666777888889999999999999999987532 256788889999999999999999999887653
Q ss_pred CCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 113 VKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|+...... .....+.+.++.++|.+.+++....
T Consensus 182 --p~~~~~~~---------------~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 182 --QDTRYQGL---------------VAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp --CSHHHHHH---------------HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred --cchHHHHH---------------HHHHHHHhhcccCccHHHHHHHHhc
Confidence 33322111 1112244477888888888888765
No 130
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=7.8e-05 Score=45.77 Aligned_cols=114 Identities=7% Similarity=-0.001 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC--cchHHHHHHH
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK--NDIFAGNALI 124 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 124 (181)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++........ ++. ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~-- 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY---RQ-- 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH---HH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH---HH--
Confidence 3457777888889999999999999987754 336677888888899999999999999988765321 110 00
Q ss_pred HHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 125 DMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
....|..+...+.+.|++++|.+.|++..+. .|+......+-
T Consensus 78 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 78 -------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 0224455666677799999999999999885 35655554443
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.15 E-value=5.9e-06 Score=55.62 Aligned_cols=109 Identities=7% Similarity=0.027 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC---CcH----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE---RDY----------------VLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
...+..+-..+.+.|++++|.+.|++... .+. ..|..+-..+.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34567777888899999999999988763 222 67888888999999999999999998875
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
. +.+...+..+-.++...|++++|...++...+.... +...+..+-..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 3 235678888889999999999999999998876432 33344444333
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=0.00016 Score=46.85 Aligned_cols=99 Identities=9% Similarity=0.044 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
+...|..+-..+.+.|++++|++.|++..+..- -+...|..+-..+.+.|++++|...++...+.... +..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~------- 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSK------- 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHH-------
Confidence 566788888899999999999999999887542 26788889999999999999999999999887533 233
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 81 ---------~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 81 ---------AWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4445555566699999999999999875
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.11 E-value=0.00019 Score=51.26 Aligned_cols=139 Identities=11% Similarity=0.015 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD--EFTIVSILTARAN 94 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~ 94 (181)
+-.....+...|++++|.++|+.+.. |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+-.++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34566788899999999999999974 544355556668899999999999998554431 121 2356778888999
Q ss_pred cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038237 95 LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 174 (181)
.|++++|...|++.......|.... ..+...-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~--------------da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACAR--------------AIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999999999875433253211 01122333455699999999999999885 4554444333
No 134
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.11 E-value=0.00055 Score=52.45 Aligned_cols=155 Identities=10% Similarity=-0.021 Sum_probs=83.6
Q ss_pred cHHHHhhhcCC-CChhHHHHHHHHHhc----cCCHHHHHHHhcccCC-CcHHHHHHHHHHHHh----cCcHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN-KDVISYTAIVSGYIN----REQVDIARQCFDQMPE-RDYVLWTTMIDGYLR----VNRFREALTLFQE 72 (181)
Q Consensus 3 ~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 72 (181)
+|.++|++..+ .+...+..+-..+.. .++.++|.+.|+...+ .+...+..+-..|.. .++.++|++.|++
T Consensus 205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 34444443322 233344444444443 5566666666665543 344455555555555 5666777777766
Q ss_pred HHHcCCCccHHHHHHHHHHHHcc-----CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh------------------
Q 038237 73 IQTSNIMGDEFTIVSILTARANL-----GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK------------------ 129 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------------------ 129 (181)
..+.| +...+..+-..+... ++.++|...++...+.|.. ..+..|-..|..
T Consensus 285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA---TAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 65543 333444445555544 6667777777666655422 222223222222
Q ss_pred -cCchHhHHHHHHHHHH----cCChhHHHHHHHHHHHcC
Q 038237 130 -CTVKFTWTTMIVGLAI----SGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 130 -~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 163 (181)
.++...+..+-..|.. .+++++|.++|++..+.|
T Consensus 359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 1256666666666666 677777777777777654
No 135
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.11 E-value=5.6e-05 Score=54.10 Aligned_cols=134 Identities=9% Similarity=0.016 Sum_probs=96.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC-------C--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-cHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE-------R--DYVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-DEF 83 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 83 (181)
.|......|...|++++|.+.|++... + ...+|+.+-..|.+.|++++|+..|++..+. |-.+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466677778888999888888876643 1 2457888999999999999999999887642 2111 135
Q ss_pred HHHHHHHHHHcc-CCcchHHHHHHHHHHcCCCc-chHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 84 TIVSILTARANL-GALELGEWIKTYIDKNKVKN-DIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 84 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+++.+-..+... |++++|...+++..+..... +... ...+|+.+...+.+.|++++|.+.|++..+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------------SNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888885 99999999998877642110 1000 022455666777779999999999999998
Q ss_pred cC
Q 038237 162 AS 163 (181)
Q Consensus 162 ~~ 163 (181)
..
T Consensus 187 ~~ 188 (292)
T 1qqe_A 187 SS 188 (292)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=3.1e-05 Score=49.24 Aligned_cols=93 Identities=10% Similarity=0.002 Sum_probs=69.6
Q ss_pred HhcccCCC---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 38 CFDQMPER---DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 38 ~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
.|++.... +...+..+-..+.+.|++++|...|++.....- .+...|..+-.++.+.|++++|...++........
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 44555542 445566677788899999999999999887532 36677888888999999999999999999887543
Q ss_pred cchHHHHHHHHHhHhcCc
Q 038237 115 NDIFAGNALIDMYCKCTV 132 (181)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~ 132 (181)
+...+..+-..|...|+
T Consensus 85 -~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 85 -EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp -CTHHHHHHHHHHHHTTC
T ss_pred -CcHHHHHHHHHHHHcCC
Confidence 55667777777877773
No 137
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=6.7e-05 Score=47.73 Aligned_cols=134 Identities=11% Similarity=0.022 Sum_probs=98.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-----Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-cH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-----RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-DE 82 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 82 (181)
.++..+-..+...|++++|.+.+++..+ ++ ..++..+-..+...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3577788889999999999999988764 11 246888888999999999999999987642 1111 14
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
..+..+-..+...|++++|...+++..+.... .+... ....+..+-..+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG------------EGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777888889999999999999887754111 11110 122455666777789999999999998765
Q ss_pred c
Q 038237 162 A 162 (181)
Q Consensus 162 ~ 162 (181)
.
T Consensus 158 ~ 158 (164)
T 3ro3_A 158 I 158 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.07 E-value=0.0001 Score=52.65 Aligned_cols=121 Identities=12% Similarity=-0.044 Sum_probs=92.6
Q ss_pred ccHHHHhhhcCC--CChhHHHHHHHHHhccCCHHHHHHHhcccCCC-c----HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--KDVISYTAIVSGYINREQVDIARQCFDQMPER-D----YVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
++|.++|+.... |+......+-..+.+.+++++|+..|+...+. + ...+..+-.++.+.|++++|++.|++..
T Consensus 119 ~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 119 ADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 678999998864 64445566667889999999999999977652 2 3467778889999999999999999987
Q ss_pred HcCCCcc--HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 75 TSNIMGD--EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 75 ~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
.....|. .......-.++.+.|+.++|..+|+++...... ...+..|.
T Consensus 199 ~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~ 248 (282)
T 4f3v_A 199 DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALK 248 (282)
T ss_dssp TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence 5444254 345566777888999999999999999987544 44444443
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.06 E-value=2.8e-05 Score=56.10 Aligned_cols=132 Identities=5% Similarity=-0.122 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-------C--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-cH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-------R--DYVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-DE 82 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 82 (181)
.+|+.+...|.+.|++++|.+.|++... + -..++..+-..|.. |++++|++.|++..+. +-.+ ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3577777788888888777777765532 1 23466777777777 8888888888876542 1111 13
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.++..+-..+.+.|++++|...+++.......... .+ . ....+..+...+...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~-~---------~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YP-T---------CYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH-H---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hh-H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56777778888888888888888877753111000 00 0 01234455566666899999999999988
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=6.1e-05 Score=46.26 Aligned_cols=104 Identities=9% Similarity=0.001 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC--Ccc----HHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI--MGD----EFTIVS 87 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 87 (181)
..|..+...+.+.|++++|...|+.... .+...+..+...+...|++++|...+++.....- .++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4677888899999999999999998763 4777888999999999999999999999876431 122 677888
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHH
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNA 122 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (181)
+...+.+.|++++|...++...+... +......
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 117 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKK 117 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHH
Confidence 88999999999999999999988643 4444333
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=6.3e-05 Score=50.48 Aligned_cols=127 Identities=12% Similarity=-0.008 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-Ccc-------------
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI-MGD------------- 81 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~------------- 81 (181)
.+..+......|+++++.+.|+.-.. .....+..+-..+.+.|++++|.+.|++..+..- .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 34455666777888888888874433 2555677888889999999999999999886421 121
Q ss_pred -HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 82 -EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 82 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
...+..+..++.+.|++++|...++...+.... +.. .|..+-.++...|++++|.+.|++..
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~----------------~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVK----------------ALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHH----------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 267888889999999999999999999886322 222 34445555666999999999999987
Q ss_pred Hc
Q 038237 161 RA 162 (181)
Q Consensus 161 ~~ 162 (181)
+.
T Consensus 150 ~~ 151 (198)
T 2fbn_A 150 SL 151 (198)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 142
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=1.3e-05 Score=49.24 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=43.8
Q ss_pred cCcHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHH
Q 038237 60 VNRFREALTLFQEIQTSN--IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWT 137 (181)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 137 (181)
.|++++|+..|++..+.+ -+-+...+..+-..+.+.|++++|...+++..+.... +.. .+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~----------------~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQA----------------LRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH----------------HHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chH----------------HHH
Confidence 355666666666665543 1223345555666666666666666666666655322 122 222
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+..++.+.|++++|.+.|++....
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333344466666666666666544
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.00055 Score=42.97 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHH
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD----EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAG 120 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (181)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++...+.... +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~- 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA- 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH-
Confidence 46778888999999999999999999998875 355 677888888999999999999999998876332 2333
Q ss_pred HHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 121 NALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 121 ~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
|..+...+.+.|++++|.+.|++....
T Consensus 102 ---------------~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 ---------------LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp ---------------HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334445556699999999999999875
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=0.00013 Score=48.53 Aligned_cols=93 Identities=11% Similarity=-0.057 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC-----C-c----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCC-ccH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE-----R-D----YVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIM-GDE 82 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~ 82 (181)
++..+-..+...|++++|.+.+++... + + ...+..+-..+...|++++|.+.+++.... +-. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 455555566666666666666555432 1 1 223555555666666666666666665421 111 011
Q ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 83 FTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
.++..+-..+...|++++|...+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2244555555666666666666555543
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.99 E-value=0.00014 Score=49.58 Aligned_cols=150 Identities=12% Similarity=-0.072 Sum_probs=107.9
Q ss_pred ccHHHHhhhcCC-CChhHHHHHHHHHhccC----CHHHHHHHhcccCCC-cHHHHHHHHHHHHh----cCcHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN-KDVISYTAIVSGYINRE----QVDIARQCFDQMPER-DYVLWTTMIDGYLR----VNRFREALTLFQ 71 (181)
Q Consensus 2 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~ 71 (181)
++|+++|++..+ -++..+..+-..|.+ + +.++|.+.|+...++ ++.++..|-..|.. .+++++|++.|+
T Consensus 35 ~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 113 (212)
T 3rjv_A 35 QKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQ 113 (212)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 467778877654 356677777777877 6 899999999988754 77778888888877 789999999999
Q ss_pred HHHHcCCC-ccHHHHHHHHHHHHc----cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHH--
Q 038237 72 EIQTSNIM-GDEFTIVSILTARAN----LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLA-- 144 (181)
Q Consensus 72 ~m~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~-- 144 (181)
+..+.|.. .+...+..+-..+.. .+++++|...|+...+.+ .+...+..|-..|.... .
T Consensus 114 ~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~------------gg~ 179 (212)
T 3rjv_A 114 DAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGE------------KGF 179 (212)
T ss_dssp HHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCB------------TTT
T ss_pred HHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC------------CCC
Confidence 99887642 125667777777777 778999999999988762 12223333333332210 0
Q ss_pred HcCChhHHHHHHHHHHHcCCCC
Q 038237 145 ISGNGDKALDMFSQMLRASIKP 166 (181)
Q Consensus 145 ~~~~~~~a~~~~~~m~~~~~~p 166 (181)
...+.++|.++|++..+.|...
T Consensus 180 ~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHH
Confidence 0238999999999999887543
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=5e-05 Score=47.48 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCcc----HHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN--IMGD----EFTIVSI 88 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~l 88 (181)
.+..+-..+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|++.|++..+.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 567788899999999999999998764 478889999999999999999999999886532 1111 2356677
Q ss_pred HHHHHccCCcchHHHHHHHHHHcCCCcchHHHH
Q 038237 89 LTARANLGALELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
-.++...|++++|...|++..... |+..+..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF--RDPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHH
Confidence 778889999999999999887753 4444433
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.98 E-value=0.00067 Score=51.96 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.3
Q ss_pred cCChhHHHHHHHHHHH
Q 038237 146 SGNGDKALDMFSQMLR 161 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~ 161 (181)
.++.++|.++|++..+
T Consensus 272 ~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAE 287 (490)
T ss_dssp SCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 148
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.93 E-value=0.00046 Score=47.27 Aligned_cols=144 Identities=8% Similarity=-0.078 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC--Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH----HH
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE--RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF----TI 85 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~ 85 (181)
...+..+...+.+.|++++|...|+++.. |+ ...+..+...+.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34556667788899999999999999874 32 3577888899999999999999999988743 3321 23
Q ss_pred HHHHHHHH------------------ccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC-chHhHHHHHHHHHHc
Q 038237 86 VSILTARA------------------NLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT-VKFTWTTMIVGLAIS 146 (181)
Q Consensus 86 ~~l~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~li~~~~~~ 146 (181)
..+-.++. ..|+.++|...|+.+.+.... +...+..+...-...+ .....-.+...|.+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333 357889999999999876332 2222222211100000 111223455667889
Q ss_pred CChhHHHHHHHHHHHc
Q 038237 147 GNGDKALDMFSQMLRA 162 (181)
Q Consensus 147 ~~~~~a~~~~~~m~~~ 162 (181)
|++++|...|+++.+.
T Consensus 161 ~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD 176 (225)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999999875
No 149
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=2.2e-05 Score=60.02 Aligned_cols=111 Identities=8% Similarity=-0.002 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHhcccCC--C-c---------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 16 VISYTAIVSGYINREQVDIARQCFDQMPE--R-D---------------YVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 16 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
...|..+-..+.+.|++++|...|++..+ | + ...|..+-.+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677888999999999999999998864 3 3 5789999999999999999999999998854
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYC 128 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 128 (181)
- -+...|..+-.++...|++++|...|++..+.... +...+..+-..+.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 2 36788888999999999999999999999876432 3334444444433
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.90 E-value=0.0006 Score=43.68 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALID 125 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 125 (181)
....+..+-..+...|++++|...|++..+..- .+...+..+...+...|++++|...++...+.... +..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~------- 82 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIK------- 82 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH-------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHH-------
Confidence 345677788889999999999999999887532 36778888899999999999999999998876432 222
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..+...+.+.|++++|.+.|++..+.
T Consensus 83 ---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 83 ---------GYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555566699999999999999875
No 151
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.89 E-value=0.0011 Score=47.93 Aligned_cols=159 Identities=5% Similarity=-0.082 Sum_probs=114.2
Q ss_pred ccHHHHhhhcCC--CC-hhHHHHHHHHH----hcc---CCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHH--HH
Q 038237 2 GFTLEIFGTMKN--KD-VISYTAIVSGY----INR---EQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFR--EA 66 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~-~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--~a 66 (181)
+++++.++.... |. ..+|+---..+ .+. ++++++.++++.+.+ .+..+|+.--..+.+.|+++ ++
T Consensus 86 ~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 86 YDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHH
Confidence 355666665543 43 33455433333 444 788999999988874 58888888877788888888 99
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCC------cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGA------LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT--------- 131 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 131 (181)
++.++++.+.... |...|+--.....+.++ ++++.+.++..+...+. |...|+.+-..+.+.|
T Consensus 166 L~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~ 243 (306)
T 3dra_A 166 LSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEF 243 (306)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHH
Confidence 9999999987665 77888766666666665 67777777777776544 6666665554444333
Q ss_pred -------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 132 -------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 132 -------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+..+...+.+.|+.++|.++++.+.++
T Consensus 244 ~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 244 SLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 4577888999999999999999999999864
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.89 E-value=0.00023 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.044 Sum_probs=48.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+-..+.+.|++++|...|++..+..- -+...|..+-.++.+.|++++|...+++..+.... +...+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~---------- 89 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHA---------- 89 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH----------
Confidence 344455556666666666666555321 14455555555666666666666666665554322 222222
Q ss_pred chHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 132 VKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 132 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.+-..+.+.|++++|.+.|++..+
T Consensus 90 ------~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 90 ------ALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223333336666666666666554
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=4.1e-05 Score=58.88 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=87.2
Q ss_pred HHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 23 VSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
-..+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|.+.+++..+..- -+...+..+-.++.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 3456688999999999998764 4688999999999999999999999999988642 35678888999999999999
Q ss_pred hHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHH
Q 038237 100 LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFS 157 (181)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 157 (181)
+|...+++..+.... +...+..+-.+ ..+.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~--------------~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQEC--------------NKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHH--------------HHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHH--------------HHHHHHHHHHHHhcccc
Confidence 999999999886432 22222222211 12444788888888887
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=7.5e-05 Score=46.24 Aligned_cols=93 Identities=6% Similarity=-0.075 Sum_probs=79.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+..+...+.+.|++++|...|+...+ .+...|..+-..+...|++++|+..|++..+..- -+...+..+...+.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 456667788899999999999999874 4788899999999999999999999999887542 256788888999999
Q ss_pred cCCcchHHHHHHHHHHc
Q 038237 95 LGALELGEWIKTYIDKN 111 (181)
Q Consensus 95 ~~~~~~a~~~~~~~~~~ 111 (181)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 155
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.86 E-value=0.00091 Score=53.68 Aligned_cols=172 Identities=7% Similarity=0.022 Sum_probs=98.5
Q ss_pred ccHH-HHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC-------------C------------cHHHHHH
Q 038237 2 GFTL-EIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE-------------R------------DYVLWTT 52 (181)
Q Consensus 2 ~~a~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------~------------~~~~~~~ 52 (181)
++|. ++|++... | +...|-..+...-+.|+++.|.++|+.+.. | ....|-.
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 3454 66665443 4 333456666677777777777777777653 2 1224666
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc-C-CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc
Q 038237 53 MIDGYLRVNRFREALTLFQEIQTS-N-IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC 130 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 130 (181)
.+....+.|..+.|.++|.+..+. + ..+......+.+.-.. .++.+.|..+|+...+. ++-+...|...+......
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 666666667777788888777664 2 1222222222222211 24477777777777765 233444555555544333
Q ss_pred C---------------------chHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 131 T---------------------VKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 131 ~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
| ....|...+.--.+.|+.+.+..+.+++.+. .|+......+++-
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 2 2345666666667777777777777777765 3444444444443
No 156
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.86 E-value=0.00017 Score=57.79 Aligned_cols=129 Identities=9% Similarity=-0.023 Sum_probs=99.4
Q ss_pred hccCCHHHHHHHhcccC-----------CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 27 INREQVDIARQCFDQMP-----------ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
...|++++|.+.+++.. ..+...+..+-..+.+.|++++|.+.|++..+..- -+...|..+-.++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 78899999999999876 24677888999999999999999999999887532 2567888888999999
Q ss_pred CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-ChhhHHHH
Q 038237 96 GALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKP-DEVAYVGV 174 (181)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~l 174 (181)
|++++|...|++..+.... +.. .|..+-..+.+.|++++ .+.|++..+. .| +...|..+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~----------------~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~l 540 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELA----------------PKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGL 540 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSH----------------HHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChH----------------HHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHH
Confidence 9999999999999887543 233 33444445556999999 9999998874 23 33444444
Q ss_pred Hh
Q 038237 175 LS 176 (181)
Q Consensus 175 i~ 176 (181)
-.
T Consensus 541 g~ 542 (681)
T 2pzi_A 541 AR 542 (681)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=7.8e-05 Score=45.65 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=64.4
Q ss_pred ccCCHHHHHHHhcccCCC------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 28 NREQVDIARQCFDQMPER------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
..|++++|...|++..+. +...|..+-..|.+.|++++|.+.|++..+..-. +...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 346677777777776543 3456777777888888888888888888775422 466777788888888888888
Q ss_pred HHHHHHHHHcC-CCcchHHHHHHHHHh
Q 038237 102 EWIKTYIDKNK-VKNDIFAGNALIDMY 127 (181)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~~~ll~~~ 127 (181)
...++...... -.|+...|...+..|
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88888877652 233333343333333
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.85 E-value=0.002 Score=45.81 Aligned_cols=140 Identities=9% Similarity=-0.064 Sum_probs=69.9
Q ss_pred HHHHHHhccCCHHHHHHHhcccCC--C-c------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---Ccc--HHHHH
Q 038237 21 AIVSGYINREQVDIARQCFDQMPE--R-D------YVLWTTMIDGYLRVNRFREALTLFQEIQTSNI---MGD--EFTIV 86 (181)
Q Consensus 21 ~li~~~~~~~~~~~a~~~~~~m~~--~-~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~ 86 (181)
..+..+...|++++|.+.+++..+ + . ...+..+...+...|++++|+..|++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344555566666666666553321 1 1 11122333444555666666666666543211 111 23555
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHc----CCCc--chHHHHHHHHHhHhcC------------------------chHhH
Q 038237 87 SILTARANLGALELGEWIKTYIDKN----KVKN--DIFAGNALIDMYCKCT------------------------VKFTW 136 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~------------------------~~~~~ 136 (181)
.+-..+...|++++|...+++..+. +-.+ ...++..+-..|...| -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6666666666666666666655521 1111 1123444444444333 13455
Q ss_pred HHHHHHHHHcCChhHH-HHHHHHHH
Q 038237 137 TTMIVGLAISGNGDKA-LDMFSQML 160 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a-~~~~~~m~ 160 (181)
..+-..|.+.|+.++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5666666677777777 66566543
No 159
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.85 E-value=0.0007 Score=45.82 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=68.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHH----------------HHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVS----------------ILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
.....+.+.|++++|...|++..+.. |+ ...|.. +-..+.+.|++++|...++...+....
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 34456778999999999999988753 43 345555 788899999999999999999887543
Q ss_pred cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 115 NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+...+.. +-..+...|++++|.+.|++..+.
T Consensus 87 -~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 87 -NVDCLEA----------------CAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp -CHHHHHH----------------HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344444 444455588888888888888764
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.0013 Score=40.28 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=25.0
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 56 GYLRVNRFREALTLFQEIQTSNIMGDE----FTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 56 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.+.+.|++++|.+.|++..+.. |+. ..+..+-..+.+.|++++|...++...+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555544421 111 23344444445555555555555555443
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.83 E-value=0.0002 Score=44.08 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC--Cc-H---HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc----HHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE--RD-Y---VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD----EFTIVSI 88 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l 88 (181)
+..+...+.+.|++++|.+.|+...+ |+ . ..+..+-..+.+.|++++|...|++..+.. |+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 34456677889999999999998764 43 3 477788889999999999999999988753 33 5667788
Q ss_pred HHHHHccCCcchHHHHHHHHHHcC
Q 038237 89 LTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..++.+.|++++|...++...+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 889999999999999999998874
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00017 Score=55.67 Aligned_cols=123 Identities=8% Similarity=-0.083 Sum_probs=92.1
Q ss_pred HHhccCCHHHHHHHhcccCC-------C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----cC-CCccH-HHHH
Q 038237 25 GYINREQVDIARQCFDQMPE-------R----DYVLWTTMIDGYLRVNRFREALTLFQEIQT-----SN-IMGDE-FTIV 86 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~~-~~~~ 86 (181)
.+-..|++++|..++++... + ...+++.|...|...|++++|..++++..+ .| -.|++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999988877642 2 445799999999999999999999998754 22 23444 6789
Q ss_pred HHHHHHHccCCcchHHHHHHHHHH-----cCCC-cchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 87 SILTARANLGALELGEWIKTYIDK-----NKVK-NDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
.|-..|...|++++|..++++... .|.. |++.. +.+.+-.++...+.+++|+.+|++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~---------------~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD---------------LEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987764 2322 22221 22445556666889999999999998
Q ss_pred Hc
Q 038237 161 RA 162 (181)
Q Consensus 161 ~~ 162 (181)
+.
T Consensus 463 ~~ 464 (490)
T 3n71_A 463 EA 464 (490)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 163
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.78 E-value=0.001 Score=48.60 Aligned_cols=100 Identities=9% Similarity=-0.006 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--------------HHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD--------------EFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
+...|..+-..+.+.|++++|+..|++..+..-... ...|..+-.++.+.|++++|...++...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566788889999999999999999999887542211 478899999999999999999999999886
Q ss_pred CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 112 KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
... +.. .|..+-.+|.+.|++++|.+.|++..+.
T Consensus 226 ~p~-~~~----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSN-NEK----------------GLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CTT-CHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-cHH----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 432 233 4445555666699999999999999875
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00086 Score=43.26 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHc--------C---------CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTS--------N---------IMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.+...-..+.+.|++++|+..|.+.... . -+-+...|..+..++.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555556666666655554432 0 0112245666666666677777777766666655
Q ss_pred CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 112 KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
... +.. .|..+-.+|...|++++|.+.|++....
T Consensus 93 ~p~-~~~----------------a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET-NEK----------------ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT-CHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-chH----------------HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 322 122 2333344444467777777777666653
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.73 E-value=0.001 Score=47.33 Aligned_cols=96 Identities=8% Similarity=-0.031 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...+..+...+.+.|++++|...|++... | +...|..+-..|.+.|++++|.+.+++..+.. +-+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345667777888888888888888887753 3 67778888888888888888888888877643 2245677778888
Q ss_pred HHccCCcchHHHHHHHHHHc
Q 038237 92 RANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~ 111 (181)
+.+.|++++|...++...+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877664
No 166
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.72 E-value=0.0022 Score=47.04 Aligned_cols=143 Identities=7% Similarity=-0.063 Sum_probs=92.2
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC----------C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC----ccHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE----------R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM----GDEF 83 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~ 83 (181)
+..+-..+...|++++|.+.+++... + ....+..+-..+...|++++|...+++.....-. ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 55666778888998888888877642 1 2234566777788889999999988887653211 1235
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCc-chHHHH-----HHHHHhHhcC----------------------chHh
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDKNKVKN-DIFAGN-----ALIDMYCKCT----------------------VKFT 135 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----~ll~~~~~~~----------------------~~~~ 135 (181)
++..+...+...|++++|...+++.......+ ....+. .....+...| ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 56677778888899999988888876542111 111111 1222233433 0223
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
+..+...+...|++++|.+.+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667778888888888888888754
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.71 E-value=0.0009 Score=49.10 Aligned_cols=144 Identities=10% Similarity=-0.095 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--C------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--HHHHH-
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--R------DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD--EFTIV- 86 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~- 86 (181)
.+..+-..+...|++++|...+++... + ...++..+...+...|++++|...+++.....-.++ .....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 466677888999999999999987642 1 234677788888999999999999998865321111 11111
Q ss_pred ---HHHHHHHccCCcchHHHHHHHHHHcCCCc---chHHHHHHHHHhHhcC-----------------------c-hHhH
Q 038237 87 ---SILTARANLGALELGEWIKTYIDKNKVKN---DIFAGNALIDMYCKCT-----------------------V-KFTW 136 (181)
Q Consensus 87 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~-----------------------~-~~~~ 136 (181)
.....+...|++++|...++........+ ....+..+...+...| + ...+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23344678999999999998877543221 1223445555555555 1 1255
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
..+-..+...|+.++|.+.+++...
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6667778899999999999988754
No 168
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.69 E-value=0.00023 Score=51.28 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=95.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCC---------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCc-cHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPER---------DYVLWTTMIDGYLRVNRFREALTLFQEIQTS----NIMG-DEF 83 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 83 (181)
.|......|...|++++|.+.|.+...- -..+|+.+...|.+.|++++|+..|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4777778888899999998888876531 2447888888999999999999999886542 2111 135
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
++..+-..+.+ |++++|...+++........+... . ...+++.+-..|.+.|++++|.+.|++....
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~--~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR--Q---------AAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH--H---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh--H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67778888888 999999999988775311100000 0 1235566777778899999999999998763
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.65 E-value=0.00049 Score=48.96 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=63.5
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++... | +...|..+-.++.+.|++++|.+.++...+ .+...+..+-.++...|++++|...|++..+
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777776543 5 667789999999999999999999999875 3677899999999999999999999999876
Q ss_pred c
Q 038237 76 S 76 (181)
Q Consensus 76 ~ 76 (181)
.
T Consensus 101 l 101 (281)
T 2c2l_A 101 L 101 (281)
T ss_dssp H
T ss_pred h
Confidence 3
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.60 E-value=0.00072 Score=50.25 Aligned_cols=105 Identities=8% Similarity=0.016 Sum_probs=84.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC-------------------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE-------------------RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI 78 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 78 (181)
.+..+-..+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|++.+++..+..-
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 467778889999999999999988764 2456788899999999999999999999987542
Q ss_pred CccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 79 MGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 79 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
-+...+..+-.++.+.|++++|...+++..+.... +...+..+-
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~ 348 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELL 348 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 25678888899999999999999999999876432 333333333
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.0012 Score=42.61 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCCC---------------------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPER---------------------DYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
..+...-..+.+.|++++|...|+....- +...|..+-.+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45677788899999999999999887531 335788889999999999999999999987
Q ss_pred cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 76 SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
.. +-+...|..+-.++...|++++|...++......
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 64 2356788899999999999999999999998874
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.52 E-value=0.00025 Score=51.97 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC--CcHH------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE--RDYV------------------LWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
..+..+-..+.+.|++++|...|+.... |+.. .|..+-..|.+.|++++|+..+++..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467777888899999999999998663 4332 7888889999999999999999998875
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
. +-+...|..+-.++...|++++|...|+...+.... +...+..|.... ....+..+++..+|
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~---------------~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALA---------------EQEKALYQKQKEMY 322 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 3 236788889999999999999999999988765322 222333322221 12256777888888
Q ss_pred HHHHHc
Q 038237 157 SQMLRA 162 (181)
Q Consensus 157 ~~m~~~ 162 (181)
++|...
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 888754
No 173
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.51 E-value=0.012 Score=41.78 Aligned_cols=143 Identities=8% Similarity=0.000 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHH---HHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CCccHH----HH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPERDYV---LWTTMIDGYLRVNRFREALTLFQEIQTSN-IMGDEF----TI 85 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~ 85 (181)
|+..+...+...+.-.- ..++..-...+.. .+...+..+...|++++|.+++++..+.. ..|+.. .+
T Consensus 44 ~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~ 118 (293)
T 3u3w_A 44 PSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQ 118 (293)
T ss_dssp CCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHH
Confidence 77766666666665332 1233333333333 33345778899999999999999988743 234422 33
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHcCCC-cc----hHHHHHHHHHhHhcC-------------------------chHh
Q 038237 86 VSILTARANLGALELGEWIKTYIDKNKVK-ND----IFAGNALIDMYCKCT-------------------------VKFT 135 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~-------------------------~~~~ 135 (181)
..+...+...+++++|...+++..+.... ++ ...++.+-..|...| ...+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 34666667778999999999999874222 22 235777777776665 2346
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 136 WTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 136 ~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
|+.+...|.+.|++++|.+.+++..+
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 78888888889999999988887764
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.43 E-value=0.006 Score=39.67 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-------------HHHHHHHHHHHHccCCcchHHHHHHHHHHc----
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-------------EFTIVSILTARANLGALELGEWIKTYIDKN---- 111 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 111 (181)
.+...-..+.+.|++++|++.|++..+.. |+ ...|..+-.++.+.|++++|...++..+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34455566777888888888888876632 32 237888888889999999999988888764
Q ss_pred -CCCcchHHHHHHHHHhHhcCchHhH----HHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCChhhHH
Q 038237 112 -KVKNDIFAGNALIDMYCKCTVKFTW----TTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAYV 172 (181)
Q Consensus 112 -~~~~~~~~~~~ll~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~ 172 (181)
...|+ +...| ...-.++...|++++|+..|++..+ .|+.+......
T Consensus 91 ~e~~pd---------------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 91 GELNQD---------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp CCTTST---------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred ccCCCc---------------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 11232 22334 5666777789999999999999864 35555544433
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.43 E-value=0.02 Score=43.56 Aligned_cols=154 Identities=14% Similarity=-0.014 Sum_probs=90.9
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhccC---CHHHHHHHhcccCC---CcHHHHHHHHHHHHhc----CcHHHHHHHHHHH
Q 038237 4 TLEIFGTMKNKDVISYTAIVSGYINRE---QVDIARQCFDQMPE---RDYVLWTTMIDGYLRV----NRFREALTLFQEI 73 (181)
Q Consensus 4 a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m 73 (181)
+..++......++..+..+-..|.+.| +.++|.+.|+...+ ++...+..|-..|... +++++|++.|++.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 444555555555557777777777777 77788887776653 3444435555555443 5778888888877
Q ss_pred HHcCCCccHHHHHHHHHH-H--HccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh-------------------cC
Q 038237 74 QTSNIMGDEFTIVSILTA-R--ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK-------------------CT 131 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------------~~ 131 (181)
. .| +...+..+-.. + ...+++++|...|++..+.| +...+..|-..|.. .|
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g 316 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGR 316 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCC
Confidence 6 33 33333333333 2 34777888888887777665 22333333333322 22
Q ss_pred chHhHHHHHHHHHH----cCChhHHHHHHHHHHHcCC
Q 038237 132 VKFTWTTMIVGLAI----SGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 132 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 164 (181)
+...+..+-..|.. ..+.++|.++|++..+.|.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 45555555555554 2377888888888776654
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00057 Score=41.40 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=34.4
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
.|++.|++... | +...+..+...+.+.|++++|...|+...+ .+...|..+-..+...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444322 2 333444555555555555555555554432 234444455555555555555555555443
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0041 Score=35.37 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
...+..+-..+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|...+++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455556666667777777777777766542 1244556666667777777777777777766653
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00083 Score=40.00 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-------HHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-------EFT 84 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------~~~ 84 (181)
+...|..+-..+.+.|++++|.+.|++..+ .+...|..+-..+.+.|++++|.+.|++..+.. |+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 345567777778888888888888877653 366777777778888888888888888877642 33 334
Q ss_pred HHHHHHHHHccCCcchHHH
Q 038237 85 IVSILTARANLGALELGEW 103 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~ 103 (181)
+..+-.++...|+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444455555555554433
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.35 E-value=0.0002 Score=55.07 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=77.9
Q ss_pred ccHHHHhhhcCC--C-ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN--K-DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
++|++.|++..+ | +...|..+-.++.+.|++++|.+.+++..+ .+..+|..+-..|.+.|++++|.+.|++..+
T Consensus 23 ~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777776543 4 567899999999999999999999998864 4678899999999999999999999999887
Q ss_pred cCCCccHHHHHHHHHH--HHccCCcchHHHHHH
Q 038237 76 SNIMGDEFTIVSILTA--RANLGALELGEWIKT 106 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 106 (181)
..-. +...+..+-.+ +.+.|++++|...++
T Consensus 103 ~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 103 VKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5311 22344444444 778899999999887
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.35 E-value=0.0046 Score=45.88 Aligned_cols=99 Identities=6% Similarity=-0.031 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc--------------CCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTS--------------NIMG-DEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
...+..+-..+.+.|++++|++.|++..+. ...| +...|..+-.++.+.|++++|...+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345777888899999999999999988761 0222 4577888889999999999999999999876
Q ss_pred CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 112 KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
... + ...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 303 ~p~-~----------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPS-N----------------TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTT-C----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch-h----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 422 2 234445555666699999999999999875
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.32 E-value=0.0062 Score=46.47 Aligned_cols=98 Identities=7% Similarity=-0.063 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHccCCcchHHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD----------------EFTIVSILTARANLGALELGEWIKTYID 109 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (181)
....|..+-..+.+.|++++|+..|++..+.. |+ ...|..+-.++.+.|++++|...++...
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45578888889999999999999999987642 32 5788899999999999999999999998
Q ss_pred HcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 110 KNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 110 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+.... +.. .|..+-.+|.+.|++++|...|++..+.
T Consensus 345 ~~~p~-~~~----------------a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLDSA-NEK----------------GLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHSTT-CHH----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCc-cHH----------------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 86433 232 3444555666699999999999988764
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.32 E-value=0.0012 Score=43.04 Aligned_cols=93 Identities=14% Similarity=-0.031 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--Cc--------H-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHc-----C
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--RD--------Y-----VLWTTMIDGYLRVNRFREALTLFQEIQTS-----N 77 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 77 (181)
.+...-..+.+.|++++|.+.|+...+ |+ . ..|..+-.++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 355666778899999999999998864 33 2 28999999999999999999999998874 1
Q ss_pred CCccH-HHH----HHHHHHHHccCCcchHHHHHHHHHH
Q 038237 78 IMGDE-FTI----VSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 78 ~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
+.|+. ..| ...-.++...|++++|...|+...+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 25654 566 7778899999999999999998875
No 183
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.30 E-value=0.00095 Score=47.57 Aligned_cols=143 Identities=7% Similarity=-0.071 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHhcccCC-----Cc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCCcc-----
Q 038237 17 ISYTAIVSGYINREQVDIARQCFDQMPE-----RD----YVLWTTMIDGYLRVNRFREALTLFQEIQTS-NIMGD----- 81 (181)
Q Consensus 17 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~----- 81 (181)
..+..+...+...|++++|.+.+++... .+ ..+|+.+-..|...|++++|...|++..+. ...|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 3455577788889999999888776542 11 447888888888999999999999887631 11122
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHHHHHcC----CCc-chHHHHHHHHHhHhcCc-----hHhHHHHHHHHHHcCChhH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTYIDKNK----VKN-DIFAGNALIDMYCKCTV-----KFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~-----~~~~~~li~~~~~~~~~~~ 151 (181)
..++..+...+.+.|++++|...+++..+.. ... -..+|..+-..|.+.|+ ...|.-.+..+-..++...
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 2578888888889999999998888776431 111 25567777777777762 2225555666666666655
Q ss_pred HHHHHHHH
Q 038237 152 ALDMFSQM 159 (181)
Q Consensus 152 a~~~~~~m 159 (181)
+..+...+
T Consensus 276 ~~~~~~~~ 283 (293)
T 2qfc_A 276 KEALVNKI 283 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.27 E-value=0.028 Score=41.37 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=99.3
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhcc-C-CHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHH--------HH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINR-E-QVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFR--------EA 66 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--------~a 66 (181)
+++++++.+.. | +..+|+---..+.+. + +++++.++++.+.+ .|..+|+.--....+.|+++ ++
T Consensus 107 eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 107 DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 44555554432 3 333455544444444 4 66777777777765 36667766555555555555 88
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCC-------cchHHHHHHHHHHcCCCcchHHHHHHHHHh---Hhc------
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGA-------LELGEWIKTYIDKNKVKNDIFAGNALIDMY---CKC------ 130 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~------ 130 (181)
++.++++.+.... |...|+-....+.+.++ ++++.+..++.+...+. |...|+.+-..+ .+.
T Consensus 187 Le~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 187 LDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccc
Confidence 8888888876554 77777777777766665 35566666555554433 555554432222 221
Q ss_pred -----------------------------------CchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 131 -----------------------------------TVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 131 -----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.+...+..+.+.|...|+.++|.++++.+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 15667788888999999999999999998755
No 185
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.23 E-value=0.0036 Score=50.28 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=110.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHH-HHhcccCC--C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---------Ccc
Q 038237 15 DVISYTAIVSGYINREQVDIAR-QCFDQMPE--R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNI---------MGD 81 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~ 81 (181)
+...|-....-+.+.|+.++|. ++++.... | +...|-..+...-+.|++++|.++|+++..... .|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 5566777777788889998996 99888764 3 555677788888889999999999999876410 132
Q ss_pred ------------HHHHHHHHHHHHccCCcchHHHHHHHHHHc-C-CCcchHHHHHHHHHhHhcC----------------
Q 038237 82 ------------EFTIVSILTARANLGALELGEWIKTYIDKN-K-VKNDIFAGNALIDMYCKCT---------------- 131 (181)
Q Consensus 82 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~---------------- 131 (181)
...|...++...+.|..+.|..+|...++. + ..+...+..+.+.......
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 246777888888889999999999999876 2 2344455445554332211
Q ss_pred -chHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038237 132 -VKFTWTTMIVGLAISGNGDKALDMFSQMLRAS 163 (181)
Q Consensus 132 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 163 (181)
+...|...+......|+.+.|..+|++.....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 66677888888888999999999999988763
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0043 Score=46.29 Aligned_cols=131 Identities=8% Similarity=-0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCC-----Cc---HHHHHHHHH-HHHhcCcHHHHHHHHHHHHH----cCCCcc-HHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPE-----RD---YVLWTTMID-GYLRVNRFREALTLFQEIQT----SNIMGD-EFT 84 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~~---~~~~~~li~-~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~ 84 (181)
+..+...|.+.|++++|.+.+..... ++ .......+. .+...|+.+++.+++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 67788999999999999999988763 11 112233333 33445889999999888653 333333 467
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHc--CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 85 IVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+..+...+...|++++|..+++..... +...... ....|..++..|...|++++|..++++....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS-------------LVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh-------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 788899999999999999999988754 2221111 2235666777788899999999999987643
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0028 Score=37.47 Aligned_cols=63 Identities=13% Similarity=-0.037 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 47 YVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 47 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
...+..+-..+.+.|++++|++.|++..+..- -+...|..+-.++.+.|++++|...+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555555544321 1234445555555555555555555554443
No 188
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.16 E-value=0.03 Score=40.49 Aligned_cols=175 Identities=7% Similarity=-0.086 Sum_probs=115.5
Q ss_pred ccHHHHhhhcCC--CChh-HHHHHHHHHhccC--CHHHHHHHhcccCC---CcHHHHHHHHHHH----Hhc---CcHHHH
Q 038237 2 GFTLEIFGTMKN--KDVI-SYTAIVSGYINRE--QVDIARQCFDQMPE---RDYVLWTTMIDGY----LRV---NRFREA 66 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~--~~~~a~~~~~~m~~---~~~~~~~~li~~~----~~~---~~~~~a 66 (181)
++|++.++.+.. |+.. .|+.--..+...| +++++++.++.+.. .+..+|+.--..+ .+. ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 356777776653 6555 3777777777777 99999999998874 3666666543333 344 789999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc--hHHHHHHHHHHcCCCcchHHHHHHHHH---hHh------------
Q 038237 67 LTLFQEIQTSNIMGDEFTIVSILTARANLGALE--LGEWIKTYIDKNKVKNDIFAGNALIDM---YCK------------ 129 (181)
Q Consensus 67 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~------------ 129 (181)
+++++++.+..-+ |...|+----.+.+.|+++ ++.+.++.+.+..+. |-..|+.--.. ..+
T Consensus 130 L~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 130 FDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 9999999986543 7788887777778888888 888999988876554 44444322111 111
Q ss_pred ---------cCchHhHHHHHHHHHHcCChhH-HHHHHHHHHHcC--CCCChhhHHHHHhhh
Q 038237 130 ---------CTVKFTWTTMIVGLAISGNGDK-ALDMFSQMLRAS--IKPDEVAYVGVLSAR 178 (181)
Q Consensus 130 ---------~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~t~~~li~~~ 178 (181)
-.|...|+-+-..+.+.|+... +.++.++..+.+ -..+...+..+.+.+
T Consensus 208 ~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 208 YVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 0177788888888888888655 445666665432 123455555555544
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.14 E-value=0.0036 Score=35.62 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=60.3
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
+...+..+-..+.+.|++++|...|++..+ .+...+..+-..+.+.|++++|.+.|++..+..- -+...+..+-..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 345678888899999999999999998763 4677888999999999999999999999887531 234455444444
Q ss_pred HH
Q 038237 92 RA 93 (181)
Q Consensus 92 ~~ 93 (181)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.11 E-value=0.0075 Score=37.85 Aligned_cols=103 Identities=14% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC-cchHHHH
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIM-GD----EFTIVSILTARANLGALELGEWIKTYIDKNKVK-NDIFAGN 121 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 121 (181)
.++..+-..+...|++++|.+.+++..+..-. ++ ...+..+-..+...|++++|...++........ ++...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-- 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-- 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH--
Confidence 35777888889999999999999987653111 11 246778888899999999999999987754111 11111
Q ss_pred HHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 122 ALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 122 ~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
....+..+-..+...|++++|.+.+++..+.
T Consensus 88 ----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 88 ----------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1224455666777799999999999988754
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.07 E-value=0.0019 Score=38.23 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=54.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
+...+..+-..+.+.|++++|.+.|+...+ .+...|..+-..|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556788899999999999999999998874 3677899999999999999999999998765
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.07 E-value=0.054 Score=41.15 Aligned_cols=137 Identities=9% Similarity=0.002 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccC----CHHHHHHHhcccCCCcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 038237 18 SYTAIVSGYINRE----QVDIARQCFDQMPERDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILT 90 (181)
Q Consensus 18 ~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 90 (181)
.+..+-..|...+ ..+++..+++.....++..+..|-..|.+.| +.++|++.|++..+.|-. +...+..+-.
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 3444444444444 4555666677666667778888888999999 999999999999887743 4454445555
Q ss_pred HHHcc----CCcchHHHHHHHHHHcCCCcchHHHHHHHHHhH-------------------hcCchHhHHHHHHHHHHcC
Q 038237 91 ARANL----GALELGEWIKTYIDKNKVKNDIFAGNALIDMYC-------------------KCTVKFTWTTMIVGLAISG 147 (181)
Q Consensus 91 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------------~~~~~~~~~~li~~~~~~~ 147 (181)
.+... +++++|...|+... .| +...+..|-..|. ..|+...+..+-..|. .|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 55544 68889999998887 33 3333333333311 1125555555555555 33
Q ss_pred -----ChhHHHHHHHHHH
Q 038237 148 -----NGDKALDMFSQML 160 (181)
Q Consensus 148 -----~~~~a~~~~~~m~ 160 (181)
++++|.++|++..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 6666666666665
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.06 E-value=0.0033 Score=37.91 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=61.1
Q ss_pred HHHHhcccC---CCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 35 ARQCFDQMP---ERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 35 a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
|.+.|++.. ..+...+..+-..+...|++++|...|++..+..- .+...|..+-..+.+.|++++|...++.....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444443 24778899999999999999999999999887542 35678888999999999999999999988764
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0057 Score=46.47 Aligned_cols=88 Identities=10% Similarity=-0.040 Sum_probs=65.5
Q ss_pred hcCcHHHHHHHHHHHHHc--C-CC---ccH-HHHHHHHHHHHccCCcchHHHHHHHHHHc-----CC-CcchHHHHHHHH
Q 038237 59 RVNRFREALTLFQEIQTS--N-IM---GDE-FTIVSILTARANLGALELGEWIKTYIDKN-----KV-KNDIFAGNALID 125 (181)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~--~-~~---p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~~~~ll~ 125 (181)
+.|++++|..++++..+. . +- |++ .+++.+..+|...|++++|..++++.... |. .|++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-------- 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV-------- 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH--------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH--------
Confidence 357899999999987652 2 22 333 77999999999999999999999987642 22 2333
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
..++|.|-..|...|++++|+.++++..+
T Consensus 382 -------a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 382 -------ASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 22556666677779999999999998864
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.0098 Score=45.11 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=70.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC---CCcc----HHHHHHHHHHHHccCCcchHHHHHHHHHHc-----CC-CcchH
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSN---IMGD----EFTIVSILTARANLGALELGEWIKTYIDKN-----KV-KNDIF 118 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~ 118 (181)
..+..+.+.|++++|..++++..+.. ..|+ ..+++.+..+|...|++++|..++++.... |. .|++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~- 370 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR- 370 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH-
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH-
Confidence 34556777899999999999987532 2222 367899999999999999999999977642 21 2322
Q ss_pred HHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 119 AGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 119 ~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
..+++.|-..|...|++++|+.++++..+
T Consensus 371 --------------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 --------------GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22456666677779999999999998764
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.016 Score=34.14 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV 113 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (181)
+...|..+-..+.+.|++++|.+.|++..+.. +.+...+..+-.++.+.|++++|...++.......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 45677888889999999999999999988753 23677888899999999999999999999987643
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0095 Score=43.51 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHH------------------HHHHHHHHHHccCCcchHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEF------------------TIVSILTARANLGALELGEWIKTY 107 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~ 107 (181)
....+..+-..+.+.|++++|...|++.... .|+.. .|..+-.++.+.|++++|...++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445777778888899999999999997764 24433 788888999999999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 108 IDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 108 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+.... +.. .|..+-.+|...|++++|.+.|++..+.
T Consensus 256 al~~~p~-~~~----------------a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 256 VLTEEEK-NPK----------------ALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHCTT-CHH----------------HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHhCCC-CHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8876432 233 4444555666699999999999998653
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.92 E-value=0.003 Score=48.78 Aligned_cols=94 Identities=4% Similarity=-0.119 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC----------C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCC-Cc
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE----------R-DYVLWTTMIDGYLRVNRFREALTLFQEIQT-----SNI-MG 80 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p 80 (181)
+++.+...|...|++++|..++++... | ...+++.|-..|...|++++|..++++..+ .|- .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 689999999999999999999888752 2 445799999999999999999999998653 231 23
Q ss_pred cH-HHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 81 DE-FTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 81 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
++ .+.+.+-.++...+.++.|+.++..+++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 44556667777888899999999998764
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0053 Score=46.55 Aligned_cols=89 Identities=6% Similarity=-0.050 Sum_probs=71.1
Q ss_pred HHHHHhccCCHHHHHHHhcccCC-------C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----cC-CCccH-H
Q 038237 22 IVSGYINREQVDIARQCFDQMPE-------R----DYVLWTTMIDGYLRVNRFREALTLFQEIQT-----SN-IMGDE-F 83 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~~-~ 83 (181)
.+..+.+.|++++|..++++... + ...+++.|...|...|++++|..++++... .| -.|++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 35567788999999998876642 2 445799999999999999999999998764 22 23444 6
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
+++.|-..+...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788999999999999999999887764
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.86 E-value=0.018 Score=45.34 Aligned_cols=169 Identities=10% Similarity=-0.026 Sum_probs=105.7
Q ss_pred ccHHHHhhhcCC--CChh-HHHHHHHHHhccCC----------HHHHHHHhcccCC---CcHHHHHHHHHHHHhcC--cH
Q 038237 2 GFTLEIFGTMKN--KDVI-SYTAIVSGYINREQ----------VDIARQCFDQMPE---RDYVLWTTMIDGYLRVN--RF 63 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~----------~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~ 63 (181)
++|++.++++.. |+.. .|+.--.++.+.|+ ++++.+.++.+.+ .+..+|+.--..+.+.+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 456666766653 5444 46554444555555 8888888888874 47778888888888888 77
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
+++++.++++.+...+ |...|+---....+.| ..+++.+.+.++++..+. +...|+..-..+.+..+...-.. .+
T Consensus 126 ~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~--~~ 201 (567)
T 1dce_A 126 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP--QG 201 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS--CC
T ss_pred HHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc--cc
Confidence 9999999999987654 7888888777777888 777788877777766544 44555544433322100000000 00
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
-...+.++++++.+++..... +-|...|+.+-
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~ 233 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHR 233 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHH
Confidence 000145688888888877642 22555555443
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.85 E-value=0.0034 Score=47.66 Aligned_cols=83 Identities=11% Similarity=-0.066 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHhcccCC-------C----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----cC-CCccH-HHHHHHH
Q 038237 28 NREQVDIARQCFDQMPE-------R----DYVLWTTMIDGYLRVNRFREALTLFQEIQT-----SN-IMGDE-FTIVSIL 89 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~~-~~~~~l~ 89 (181)
+.|++++|..++++..+ + ...+++.|...|...|++++|..++++..+ .| -.|++ .+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45778888888876642 2 345799999999999999999999999764 23 23554 6799999
Q ss_pred HHHHccCCcchHHHHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~ 110 (181)
..|...|++++|..++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.65 E-value=0.011 Score=37.22 Aligned_cols=112 Identities=9% Similarity=-0.107 Sum_probs=76.3
Q ss_pred cCCHHHHHHHhcccCCC-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc----cCCcchHHH
Q 038237 29 REQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN----LGALELGEW 103 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 103 (181)
.++.++|.+.|+...+. +.... |-..|...+.+++|++.|++..+.| +...+..+-..|.. .+++++|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34667777777776542 33333 5555556667888999998888774 55566666666666 678888888
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHH----cCChhHHHHHHHHHHHcCC
Q 038237 104 IKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI----SGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 164 (181)
.|+...+.|. ...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 83 ~~~~Aa~~g~-------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLND-------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTTC-------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCC-------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888776543 2233344444444 7899999999999988865
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.63 E-value=0.018 Score=36.21 Aligned_cols=108 Identities=7% Similarity=-0.079 Sum_probs=84.3
Q ss_pred ccHHHHhhhcCC-CChhHHHHHHHHHhccCCHHHHHHHhcccCC-CcHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Q 038237 2 GFTLEIFGTMKN-KDVISYTAIVSGYINREQVDIARQCFDQMPE-RDYVLWTTMIDGYLR----VNRFREALTLFQEIQT 75 (181)
Q Consensus 2 ~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 75 (181)
++|+++|++.-+ -++... +-..|.+.+.+++|.+.|+...+ .++..+..|-..|.. .+++++|++.|++-.+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 89 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc
Confidence 467778877654 233334 66777777889999999998765 577888888888888 7899999999999988
Q ss_pred cCCCccHHHHHHHHHHHHc----cCCcchHHHHHHHHHHcCCC
Q 038237 76 SNIMGDEFTIVSILTARAN----LGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 76 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 114 (181)
.| +...+..+-..+.. .++.++|...++.-.+.|..
T Consensus 90 ~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 90 LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 75 55666667777776 78999999999999887654
No 204
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.60 E-value=0.1 Score=38.09 Aligned_cols=166 Identities=8% Similarity=0.035 Sum_probs=104.6
Q ss_pred ccHHHHhhhcCC--CChhH-HHH---HHHHHhccC-------CHHHHHHHhcccCC---CcHHHHHHHHHHHHhcC--cH
Q 038237 2 GFTLEIFGTMKN--KDVIS-YTA---IVSGYINRE-------QVDIARQCFDQMPE---RDYVLWTTMIDGYLRVN--RF 63 (181)
Q Consensus 2 ~~a~~~~~~~~~--~~~~~-~~~---li~~~~~~~-------~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~ 63 (181)
++|+++++.+.. |+..+ |+. ++..+.+.. .++++..+++.+.. .+..+|+.--..+.+.+ ++
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 357777777654 54443 443 333333321 15677777777653 47778887766666767 48
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC-cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhc------------
Q 038237 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGA-LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKC------------ 130 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------------ 130 (181)
++++.+++.+.+...+ |...|+----.+...|. ++++.+.+..+++..+. |...|+..-..+...
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccccc
Confidence 8999999999886544 77788777777777777 47888888888876544 555555433332221
Q ss_pred --C------------------chHhHHHHHHHHHHc-----------CChhHHHHHHHHHHHcCCCCChhhHH
Q 038237 131 --T------------------VKFTWTTMIVGLAIS-----------GNGDKALDMFSQMLRASIKPDEVAYV 172 (181)
Q Consensus 131 --~------------------~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~t~~ 172 (181)
+ |...|+-+-..+.+. +.++++++.++++.+. .||. .|+
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~ 274 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWC 274 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chH
Confidence 1 677777555555444 4567888888888764 4554 444
No 205
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.42 E-value=0.098 Score=38.51 Aligned_cols=152 Identities=8% Similarity=-0.023 Sum_probs=74.5
Q ss_pred cHHHHhhhcCC--CChh-HHHHHHHHHhccC-CHHHHHHHhcccCC---CcHHHHHHHHHHHHhc-C-cHHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--KDVI-SYTAIVSGYINRE-QVDIARQCFDQMPE---RDYVLWTTMIDGYLRV-N-RFREALTLFQEI 73 (181)
Q Consensus 3 ~a~~~~~~~~~--~~~~-~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m 73 (181)
+|+++++++.. |+.. +|+.--..+...| .++++++.++.+.. .+..+|+.--..+.+. + ++++++++++++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34444444432 3322 2444444444444 35666666655543 2444555444444333 4 555666666666
Q ss_pred HHcCCCccHHHHHHHHHHHHccCCcc--------hHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHH
Q 038237 74 QTSNIMGDEFTIVSILTARANLGALE--------LGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAI 145 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~ 145 (181)
.+..-+ |...|+--.-...+.|.++ ++.+..+++.+..+. |...|+-.-..+.+
T Consensus 152 L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-----------------N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 152 LLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-----------------NNSAWGWRWYLRVS 213 (349)
T ss_dssp TSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-----------------CHHHHHHHHHHHTT
T ss_pred HHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-----------------CHHHHHHHHHHHHh
Confidence 554322 4455544333333333333 444444444444322 44455555555555
Q ss_pred cCC-------hhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 146 SGN-------GDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 146 ~~~-------~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
.++ ++++++.+++.... -+-|...|+-
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~-~P~n~SaW~Y 247 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL-IPHNVSAWNY 247 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 554 57788888777664 2234555544
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.30 E-value=0.016 Score=37.56 Aligned_cols=113 Identities=16% Similarity=-0.012 Sum_probs=67.1
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc----------chHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 58 LRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL----------ELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
.+.+.+++|.+.++...+..- -+...|..+-.++...+++ ++|...|++.++.... +...|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 344567777777777766432 2455555555566655554 4788888887776544 344455555554
Q ss_pred HhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhhc
Q 038237 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSART 179 (181)
Q Consensus 128 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 179 (181)
...|..+.= .-...|++++|.+.|++..+ +.|+...|...+..+.
T Consensus 91 ~~lg~l~P~-----~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPD-----ETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCC-----HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhcccCcc-----hhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 431100000 00002689999999999988 5788888877666543
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.072 Score=39.58 Aligned_cols=92 Identities=11% Similarity=-0.031 Sum_probs=69.4
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC--------C-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc--CC--Cc-cHHHH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE--------R-DYVLWTTMIDGYLRVNRFREALTLFQEIQTS--NI--MG-DEFTI 85 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~p-~~~~~ 85 (181)
+.+-..+...|+.++|.+++++... + -..++..+...+...|++++|..++.+.... +. .| ...++
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 3334445567888999888877642 1 2446788899999999999999999987642 21 12 23678
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 86 VSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
..+...|...|++++|..+++.....
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 89999999999999999999887753
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.93 E-value=0.14 Score=41.37 Aligned_cols=125 Identities=14% Similarity=-0.013 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
...++..+.+.|..+.|.++.++-. .-.......|++++|+++.+.+ .+...|..+-..+.+.+++
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~--------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQD--------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHH--------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCChHHheecCCCcc--------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCH
Confidence 3777777888888888887765321 1123345677888887775433 3566777788888888888
Q ss_pred chHHHHHHHHHHcCC-------CcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038237 99 ELGEWIKTYIDKNKV-------KNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQML 160 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 160 (181)
+.|+..|..+.+..- .-+......+....... .-++....+|.+.|++++|.+++.++.
T Consensus 698 ~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~---~~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 698 KLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT---GKFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc---CchHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 888887777643210 00111111222222111 123445555666777777777776663
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.84 E-value=0.044 Score=44.28 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=84.4
Q ss_pred HHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHH
Q 038237 23 VSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 23 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
.....+.|++++|.++.+.+. +...|..+-..+.+.++++.|.+.|.++... ..+...+...|+.+...
T Consensus 659 f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHHHHH
Confidence 344567899999999987764 5689999999999999999999999987652 34555556677777776
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 103 WIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
.+-+.....|-. +.....|.+.| -+...++.|.+.+++++|..+-+..
T Consensus 728 ~~~~~a~~~~~~------~~A~~~~~~~g---~~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 728 TLAKDAETTGKF------NLAFNAYWIAG---DIQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHHHHHTTCH------HHHHHHHHHHT---CHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCch------HHHHHHHHHcC---CHHHHHHHHHHcCChHHHHHHHHHh
Confidence 666666655432 22222232222 3456888899999999999987763
No 210
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.77 E-value=0.055 Score=32.13 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
+.=++.+-++.+....+.|++.+..+.+++|.|.+++..|..+++.++.+- .+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 455677778888888899999999999999999999999999999998763 2224467666653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.73 E-value=0.39 Score=35.65 Aligned_cols=141 Identities=8% Similarity=-0.062 Sum_probs=88.0
Q ss_pred CChhHHHHHHHHHhc-----cCCHHHHHHHhcccCC--C-cHHHHHHHHHHHHhc---C-----cHHHHHHHHHHHHH-c
Q 038237 14 KDVISYTAIVSGYIN-----REQVDIARQCFDQMPE--R-DYVLWTTMIDGYLRV---N-----RFREALTLFQEIQT-S 76 (181)
Q Consensus 14 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~---~-----~~~~a~~~~~~m~~-~ 76 (181)
.|...|...+.+... .....+|..+|++..+ | ....|..+--+|.-. + ......+.+..... .
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 466778888766543 2345889999998875 4 234454433333211 1 11111112221111 1
Q ss_pred CCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 77 NIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
.-+.+..+|..+...+...|++++|...+++....+ |+...|..+-.. +.-.|++++|.+.|
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~----------------~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV----------------YEMKGMNREAADAY 333 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH----------------HHHTTCHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH----------------HHHCCCHHHHHHHH
Confidence 235567788887777777899999999999999886 554444333333 33499999999999
Q ss_pred HHHHHcCCCCChhhHHHH
Q 038237 157 SQMLRASIKPDEVAYVGV 174 (181)
Q Consensus 157 ~~m~~~~~~p~~~t~~~l 174 (181)
++.... .|...||...
T Consensus 334 ~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 334 LTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHHHH--SCSHHHHHHH
T ss_pred HHHHhc--CCCcChHHHH
Confidence 988774 6777776543
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.48 E-value=0.031 Score=36.26 Aligned_cols=97 Identities=15% Similarity=0.030 Sum_probs=59.7
Q ss_pred hccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 27 INREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNR----------FREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
.|.+++++|.+.++...+ .+...|..+-.++...++ +++|+..|++..+..-. +...|..+-.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 344556667666666653 366666666666666654 35777777777664321 3456666777776
Q ss_pred cc-----------CCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 94 NL-----------GALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 94 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
.. |++++|...|++..+. .|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 55 3678888888777765 4444555444443
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.42 E-value=0.17 Score=28.98 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=35.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEF-TIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..+.+.|++++|.+.|++..+..- -+.. .+..+-..+.+.|++++|...++...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777777777777665421 1334 56666666677777777777777766653
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.03 E-value=0.15 Score=29.27 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=47.3
Q ss_pred HHHHHhccCCHHHHHHHhcccCC---CcHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 22 IVSGYINREQVDIARQCFDQMPE---RDYV-LWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~---~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
....+.+.|++++|.+.|++..+ .+.. .|..+-..+...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34567789999999999998864 3667 88888999999999999999999988754
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.83 E-value=0.79 Score=33.46 Aligned_cols=119 Identities=10% Similarity=-0.103 Sum_probs=78.4
Q ss_pred cHHHHhhhcCC--C-ChhHHHHHHHHHhccC--CHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Q 038237 3 FTLEIFGTMKN--K-DVISYTAIVSGYINRE--QVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNR-FREALTLFQEI 73 (181)
Q Consensus 3 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m 73 (181)
+++.+++.+.. | +..+|+---..+.+.+ .++++.++++.+.+ .|..+|+.--....+.|. ++++++.++++
T Consensus 92 ~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 92 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45555555442 3 5556766666666666 47888888888874 578888877777777787 68999999998
Q ss_pred HHcCCCccHHHHHHHHHHHHcc--------------CCcchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 74 QTSNIMGDEFTIVSILTARANL--------------GALELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
.+.... |...|+-....+.+. +.++++.+.+.......+. |...|+-+
T Consensus 172 I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~ 233 (331)
T 3dss_A 172 ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYH 233 (331)
T ss_dssp HHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 887654 667776555555443 2345566666666655433 66666543
No 216
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.82 E-value=0.63 Score=35.85 Aligned_cols=120 Identities=11% Similarity=0.144 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCC--cHHHHH--HHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPER--DYVLWT--TMIDGYLRVNRFREALTLFQEIQTSNIMGD-EFTIVSILTAR 92 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 92 (181)
.|...+...-+.+.++.|.++|+....| +...|- +.+.... .++.+.|.++|+...+.- |+ ...+...++-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 4555555555566677777777666322 222222 1111111 224667777777665532 22 22334445544
Q ss_pred HccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 93 ANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 93 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
.+.|+.+.|..+|+... .. ...|...+.--...|+.+.+..++++..+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~----------------~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KT----------------SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CB----------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HH----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666651 12 33455555555557898888888888874
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.65 E-value=0.29 Score=31.41 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 45 RDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMG--DEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
++..+.-.+-.++++++ +.++++.+|++..+.. .| +...+-.+--++.+.|++++|...++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45555555666666666 5557777777766653 23 2344445555667777777777777777765
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.35 E-value=0.42 Score=28.13 Aligned_cols=65 Identities=5% Similarity=-0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC------CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSN------IMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
..+-.|-..+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++...+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 344556666777777777777777765421 12345667777778888888888888888777653
No 219
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.32 E-value=0.39 Score=30.20 Aligned_cols=64 Identities=11% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
|.=+..+-++.+....+.|++.+..+.+++|.+.+|+..|..+|+.++.+- .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 444667777777888899999999999999999999999999999998762 2234567666653
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.99 E-value=0.38 Score=35.69 Aligned_cols=69 Identities=6% Similarity=-0.164 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
.+..+|..+...+...|++++|.+.+++....+ |+...|..+-..+.-.|++++|.+.+++.......+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 577788888877888899999999999999876 788888788888889999999999999888775443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.85 E-value=0.51 Score=27.33 Aligned_cols=48 Identities=8% Similarity=-0.103 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.++|..+|++..+..-. +......+-..+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555444443211 2233334444444455555555555554443
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.75 E-value=0.63 Score=29.53 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=66.9
Q ss_pred HhccCCHHHHHHHhcccCCC-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-CC----------------CccHHHHHH
Q 038237 26 YINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTS-NI----------------MGDEFTIVS 87 (181)
Q Consensus 26 ~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~p~~~~~~~ 87 (181)
+.-.|.+++..++..+..++ +..-||=+|.-....-+-+-..+.++..-+. .+ -.+......
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 33457777777777776642 3333444444334433444444444443221 00 113344556
Q ss_pred HHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038237 88 ILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 164 (181)
.++.....|.-+.-..+...+.. +.+|++...-.+-.+|.+ -|+..++.+++.+..++|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~K----------------lg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRR----------------VGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHH----------------hcchhhHHHHHHHHHHhhh
Confidence 66777777777777777777533 234455554555555555 7777777777777777766
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.67 E-value=0.51 Score=29.94 Aligned_cols=69 Identities=14% Similarity=-0.039 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
+....+..++.....|+-+..-+++.++.. +.+|+....-.+..||.+.|+..++.+++.+.-+.|++-
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 566778888999999999999999988644 456788888899999999999999999999999988763
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.66 E-value=0.95 Score=29.83 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 038237 25 GYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQ 74 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 74 (181)
...+.|+++.|.++-+++ .+...|..|-+...+.|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344567777777766555 455667777777777777777766666544
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.55 E-value=0.0022 Score=49.29 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 15 DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 15 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
.+.+|+.+-.+..+.+++.+|.+-|- +..|+..|..+|.+..+.|.+++-.+.+....+..-.|. .=+.|+.+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 44568888888888888888777653 445666788888888889998888887776655433333 33478888888
Q ss_pred cCCcchHHH------------HHHHHHHcCC-CcchHHHH-------------------HHHHHhHhcCchHhHHHHHHH
Q 038237 95 LGALELGEW------------IKTYIDKNKV-KNDIFAGN-------------------ALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 95 ~~~~~~a~~------------~~~~~~~~~~-~~~~~~~~-------------------~ll~~~~~~~~~~~~~~li~~ 142 (181)
.+++.+.++ +-+++-+.|. +.....|+ .-+++--+.+++.||--+-.+
T Consensus 129 ~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 129 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp SCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred hCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 887665433 3333333322 21111111 111111222388888888888
Q ss_pred HHHcCChhHHHHH
Q 038237 143 LAISGNGDKALDM 155 (181)
Q Consensus 143 ~~~~~~~~~a~~~ 155 (181)
|...+++.-|.-.
T Consensus 209 Cvd~~EfrLAqic 221 (624)
T 3lvg_A 209 CVDGKEFRLAQMC 221 (624)
T ss_dssp HHHSCTTTTTTHH
T ss_pred HhCchHHHHHHHh
Confidence 8888887766443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.50 E-value=0.56 Score=30.09 Aligned_cols=63 Identities=6% Similarity=0.079 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHhccC---CHHHHHHHhcccCCCc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 038237 14 KDVISYTAIVSGYINRE---QVDIARQCFDQMPERD-----YVLWTTMIDGYLRVNRFREALTLFQEIQTS 76 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 76 (181)
++..+.-.+-.++++.+ +++++..++++..+.+ ...+-.|--+|.+.|++++|.+.++...+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56777777777888877 6678988888876533 334445666789999999999999999884
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.47 E-value=2.2 Score=33.49 Aligned_cols=126 Identities=9% Similarity=-0.011 Sum_probs=87.8
Q ss_pred CCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC
Q 038237 30 EQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNR----------FREALTLFQEIQTSNIMGDEFTIVSILTARANLG 96 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 96 (181)
..-++|.+.++++.. .+..+|+.-=..+.+.|+ ++++++.++++.+..-+ +...|+.---.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 344678888888874 356667765455555555 89999999999886544 7788888778888888
Q ss_pred --CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCChhhHHH
Q 038237 97 --ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISG-NGDKALDMFSQMLRASIKPDEVAYVG 173 (181)
Q Consensus 97 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ 173 (181)
+++++...++++.+.... + ..+|+.--..+.+.| ..+++++.++++.+... -|...|+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N----------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~ 183 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-N----------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 183 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-C----------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccc-c----------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHH
Confidence 669999999999887544 3 334444444445567 78889999888876532 34455544
Q ss_pred H
Q 038237 174 V 174 (181)
Q Consensus 174 l 174 (181)
.
T Consensus 184 r 184 (567)
T 1dce_A 184 R 184 (567)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.88 E-value=0.87 Score=33.92 Aligned_cols=73 Identities=7% Similarity=-0.101 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHH-----cCCCcchHHHHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDK-----NKVKNDIFAGNAL 123 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 123 (181)
...++..+...|+.+++...+....... +.+...|..+|.++.+.|+..+|...|+.+.+ .|++|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456777888999999999998887643 34778999999999999999999999988764 4999988764443
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.45 E-value=0.88 Score=33.90 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHH---hcCcHHHHHHHHHHHHH--cC-CCccHH------------------HHHHHHHHHHccCCcchH
Q 038237 46 DYVLWTTMIDGYL---RVNRFREALTLFQEIQT--SN-IMGDEF------------------TIVSILTARANLGALELG 101 (181)
Q Consensus 46 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~--~~-~~p~~~------------------~~~~l~~~~~~~~~~~~a 101 (181)
|...|..++.... ..|+.+.+.+.+.+... .| .-++.. ....++.++...|+.+++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5666777766443 35788888888877654 22 222221 122334445556666666
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCChhhHHH
Q 038237 102 EWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAYVG 173 (181)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 173 (181)
...++.+..... .+.. .|-.+|.++.+.|+..+|++.|++... .|+.|+..+-..
T Consensus 191 ~~~l~~~~~~~P-~~E~----------------~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 191 IAELEALTFEHP-YREP----------------LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHST-TCHH----------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHhCC-CCHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 666666554422 1333 445555556669999999999999753 399999887543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.84 E-value=1.1 Score=26.14 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 80 GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 80 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
.+..-+-.+-..+.+.++++.|...++...+.-..++.. .......+..+..++.+.|++++|...+++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~----------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC----------cccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345556677888899999999999999877641110000 0012334455666667799999999999999
Q ss_pred HHcCCCCChh
Q 038237 160 LRASIKPDEV 169 (181)
Q Consensus 160 ~~~~~~p~~~ 169 (181)
.+ +.|+..
T Consensus 73 l~--l~P~~~ 80 (104)
T 2v5f_A 73 LE--LDPEHQ 80 (104)
T ss_dssp HH--HCTTCH
T ss_pred Hh--cCCCCH
Confidence 86 356543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.78 E-value=1.1 Score=32.19 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=69.1
Q ss_pred HHHHHHHhcccCC--C---cHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc-CCcch
Q 038237 32 VDIARQCFDQMPE--R---DYVLWTTMIDGYLRV-----NRFREALTLFQEIQTSNIMGDEFTIVSILTARANL-GALEL 100 (181)
Q Consensus 32 ~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~ 100 (181)
...|...+++..+ | +-..|..|...|.+. |+.++|.+.|++-.+-+-.-+..++...-+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3455555555443 4 356899999999995 99999999999998854211366677778888884 99999
Q ss_pred HHHHHHHHHHcCCC--cchHHHHHHH
Q 038237 101 GEWIKTYIDKNKVK--NDIFAGNALI 124 (181)
Q Consensus 101 a~~~~~~~~~~~~~--~~~~~~~~ll 124 (181)
+...+++....... |+....|.+-
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 99999999998766 7766655544
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.16 E-value=2.2 Score=28.09 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=64.3
Q ss_pred ccHHHHhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 038237 2 GFTLEIFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81 (181)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (181)
+.|.++.+.+ .+...|..+-+...+.|+++-|.+.|..... +..+.--|.-.|+.++..++-+.-...|
T Consensus 22 ~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g---- 90 (177)
T 3mkq_B 22 DAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRE---- 90 (177)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCc----
Confidence 3455555544 3566899999999999999999999998876 4555555666677666554444433333
Q ss_pred HHHHHHHHHHHHccCCcchHHHHHHH
Q 038237 82 EFTIVSILTARANLGALELGEWIKTY 107 (181)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 107 (181)
-++.....+...|+++++.+++.+
T Consensus 91 --~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 91 --DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 235566667778888888888743
No 233
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.71 E-value=1.8 Score=24.88 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHccCC---cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHH
Q 038237 80 GDEFTIVSILTARANLGA---LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMF 156 (181)
Q Consensus 80 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 156 (181)
.|...+..+-.++...++ .++|..++++..+.... ++. ....+-..+.+.|++++|.+.|
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~r----------------A~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEA----------------ALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHH----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHH----------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666666654444 68899999998886433 222 2233334455699999999999
Q ss_pred HHHHHc
Q 038237 157 SQMLRA 162 (181)
Q Consensus 157 ~~m~~~ 162 (181)
+++.+.
T Consensus 67 ~~~l~~ 72 (93)
T 3bee_A 67 VLLLDS 72 (93)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999986
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.56 E-value=2.5 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=8.9
Q ss_pred HHcCChhHHHHHHHHHHH
Q 038237 144 AISGNGDKALDMFSQMLR 161 (181)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~ 161 (181)
.+.|++++|.+.++.+.+
T Consensus 85 yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 335555555555555544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.49 E-value=4.2 Score=33.26 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCC-HHHHHHHhcccCCCcH--HH--HHHHHHHHHhcC-cHHHHHHHHHHHHHc------CCCcc-----
Q 038237 19 YTAIVSGYINREQ-VDIARQCFDQMPERDY--VL--WTTMIDGYLRVN-RFREALTLFQEIQTS------NIMGD----- 81 (181)
Q Consensus 19 ~~~li~~~~~~~~-~~~a~~~~~~m~~~~~--~~--~~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~p~----- 81 (181)
-..++..+...++ ++.|..+|+++...++ .. ..++|....+.+ +--+|.+++.+..+. ...+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 5778888887764222 22 223333333333 233555555554321 11111
Q ss_pred ------HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHH
Q 038237 82 ------EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM 155 (181)
Q Consensus 82 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 155 (181)
......-.+-|...|+++.|..+-++..... |+ +-.+|-.|..+|...|+++.|+=.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--Ps---------------eF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LD---------------SFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SS---------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--ch---------------hhHHHHHHHHHHHHhccHHHHHHH
Confidence 1122333444556788888887777766552 22 233555566666669999999999
Q ss_pred HHHH
Q 038237 156 FSQM 159 (181)
Q Consensus 156 ~~~m 159 (181)
++.+
T Consensus 394 LNSc 397 (754)
T 4gns_B 394 INSM 397 (754)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 9888
No 236
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=89.42 E-value=2.5 Score=26.12 Aligned_cols=65 Identities=11% Similarity=0.264 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCccHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVN--RFREALTLFQEIQTSNIMGDEF 83 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~ 83 (181)
...++.-|...|+.++|.+.++++..| .......+..++-+.+ ..+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 466788888889999999999988766 2334455555665543 2467788888888777554443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.86 E-value=3.3 Score=26.65 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHcCCCccHHH----HHHH-H--HHHHccCCcchHHHHHHHHHHc
Q 038237 45 RDYVLWTTMIDGYLRVNRF------REALTLFQEIQTSNIMGDEFT----IVSI-L--TARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l-~--~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
.|..+|=..+.-.-+.|+. ++..++|++... .++|+... |--+ + ..+...+|.+.|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3555666666665555666 666666665444 34454311 1000 0 0012236777777777777654
Q ss_pred CCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 112 KVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
+-.- ..+ |-..-+--.+.|++++|.+++.+-...+-+|.
T Consensus 90 hKkF-AKi----------------wi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF-AFV----------------HISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB-HHH----------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH-HHH----------------HHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 2111 222 22333334457888888888887777655543
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.59 E-value=4.6 Score=30.48 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHccCCcchHHHHHHHHHHc-CCCcchHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIM--GDEFTIVSILTARANLGALELGEWIKTYIDKN-KVKNDIFAGNALID 125 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~ 125 (181)
+...+..-|.+.|++++|.+.|.++...-.. --...+-.+++.+...+++..+.....+.... .-.++....+.+-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk- 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK- 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH-
Confidence 4556778888999999999999999864332 23466778889999999999999998887654 1222322222211
Q ss_pred HhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 126 MYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 126 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
.|..++ +...+++..|...|-+....
T Consensus 212 ---------~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 ---------TYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---------HHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 122222 22367888888888776544
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.04 E-value=5.8 Score=28.48 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=83.6
Q ss_pred CCHHHHHHHhcccCCCcHH--HHHHHHHHH-Hhc--C------cHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHc-
Q 038237 30 EQVDIARQCFDQMPERDYV--LWTTMIDGY-LRV--N------RFREALTLFQEIQTSNIMGD---EFTIVSILTARAN- 94 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~~--~~~~li~~~-~~~--~------~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~- 94 (181)
++..+-.+.+.+....++. .|..++.+- ... | ....|...+++..+ +.|+ -..|..+-..|.+
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 3334445555555544443 566666643 332 3 24555556666555 3566 4578888888888
Q ss_pred ----cCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CCh
Q 038237 95 ----LGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIK--PDE 168 (181)
Q Consensus 95 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~ 168 (181)
.|+.++|.+.|++-...+..-+..++...-..+++. .|+.+.+.+.+++....... |+.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~---------------~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP---------------LNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT---------------TTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 499999999999999875532344444444444441 48999999999999998766 777
Q ss_pred hhHHHHH
Q 038237 169 VAYVGVL 175 (181)
Q Consensus 169 ~t~~~li 175 (181)
...+.+-
T Consensus 278 ~lan~~~ 284 (301)
T 3u64_A 278 KLLVILS 284 (301)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6666554
No 240
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=87.88 E-value=3.8 Score=26.19 Aligned_cols=66 Identities=11% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCccHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVN--RFREALTLFQEIQTSNIMGDEFT 84 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~ 84 (181)
...++.-|...|+.++|.+.++++..| ...+...+..++-+.+ ..+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 567888888899999999999999876 2334555555666543 25678888888888776544433
No 241
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.48 E-value=5.1 Score=26.19 Aligned_cols=146 Identities=11% Similarity=0.040 Sum_probs=81.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+++.+..+|..+-...+.++++.+..+....+.+.+..++...-...+.++.+.+..+ +...+.++.. .++..+-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 4455556777777777888888777666666666666677776666667777666543 3333333333 25666667
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC---------------chHhHHHHHHHHHHcCChhH
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT---------------VKFTWTTMIVGLAISGNGDK 151 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------~~~~~~~li~~~~~~~~~~~ 151 (181)
..+.++.+.++.+....+.+ +.. .++..+-...+.++++.+ +...-...+.++.+.|. .+
T Consensus 95 ~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 77777777776544333333 222 234444444444444333 33344444555555544 33
Q ss_pred HHHHHHHHHH
Q 038237 152 ALDMFSQMLR 161 (181)
Q Consensus 152 a~~~~~~m~~ 161 (181)
+...+.++.+
T Consensus 170 ~~~~L~~~l~ 179 (201)
T 3ltj_A 170 VRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=84.57 E-value=12 Score=28.75 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH--HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV--SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
|-..+....+.+..+.|..+|++. ... .++...|. +.+.... .++.+.|..+|+...+.-.. ++..|...++
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid-- 362 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFL-- 362 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHH--
Confidence 444444444566788888999888 221 12333332 2222222 33688899999888775321 2223333333
Q ss_pred HhcCchHhHHHHHHHHHHcCChhHHHHHHHHH
Q 038237 128 CKCTVKFTWTTMIVGLAISGNGDKALDMFSQM 159 (181)
Q Consensus 128 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 159 (181)
-..+.|+.+.|..+|++.
T Consensus 363 --------------~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 --------------FLLRIGDEENARALFKRL 380 (493)
T ss_dssp --------------HHHHHTCHHHHHHHHHHS
T ss_pred --------------HHHHcCCHHHHHHHHHHH
Confidence 333478888888888876
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.50 E-value=5 Score=24.75 Aligned_cols=68 Identities=7% Similarity=-0.055 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHcCCC-ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 45 RDYVLWTTMIDGYLRVNRFRE---ALTLFQEIQTSNIM-GDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
++..+--.+..++.+++...+ ++.++++..+.+-+ -.....-.+.-++.+.|+++.|...++.+.+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 556666666667777775554 88888887776421 134555567778889999999999999888763
No 244
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=84.39 E-value=10 Score=27.97 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCCCc----HHHHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPERD----YVLWTTMIDGYLRVNR-FREALTLFQEIQTSNIMGDEFTIVSILTAR 92 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 92 (181)
.-.++|.-|...|++++|.+.++++..|+ ...+..+..++-+... -+.+-.++..+...++-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999875 2344444444444322 366777888888877654444433333333
Q ss_pred HccC----CcchHHHHHHHH
Q 038237 93 ANLG----ALELGEWIKTYI 108 (181)
Q Consensus 93 ~~~~----~~~~a~~~~~~~ 108 (181)
.... |.+.|...+..+
T Consensus 94 e~l~Dl~iDiP~a~~~la~f 113 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQF 113 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHH
T ss_pred hhChHhccccccHHHHHHHH
Confidence 3333 334444444443
No 245
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=84.18 E-value=10 Score=27.64 Aligned_cols=140 Identities=9% Similarity=-0.002 Sum_probs=82.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCc---HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCccHHH---HHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERD---YVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFT---IVSILTA 91 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~ 91 (181)
...++.-|...|+.++|.+.++++..|. ......+..+.-+.. .-+.+..++..+.+.|+-+.... +..++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 4678889999999999999999998773 223333333443322 34677788888888775433333 3333333
Q ss_pred HHcc-CCcchHHHHHHHHHHc----CCCcchHHHHHHHHHhHhcC-chHhHHHHHHHHHHcCChhHHHHHHHH
Q 038237 92 RANL-GALELGEWIKTYIDKN----KVKNDIFAGNALIDMYCKCT-VKFTWTTMIVGLAISGNGDKALDMFSQ 158 (181)
Q Consensus 92 ~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 158 (181)
+-.. =|.+.|...+..+... |..|-...++.+...+...| .......++..+.+....+.+.++|++
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3322 2677888888887654 44332233333333333323 223344555566666667777777664
No 246
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.94 E-value=8.6 Score=26.61 Aligned_cols=80 Identities=6% Similarity=-0.120 Sum_probs=37.5
Q ss_pred CCChhHHHHHHHHHhccCC-----HHHHHHH-hcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 13 NKDVISYTAIVSGYINREQ-----VDIARQC-FDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 13 ~~~~~~~~~li~~~~~~~~-----~~~a~~~-~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+++..+-...+.++++.+. .+.+... ...+..++...-...+.+..+.|+.+ +...+.++... ++..+-.
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~ 177 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRN 177 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHH
Confidence 4566666666666666541 2223222 23334456665555666666655532 33333333332 4544444
Q ss_pred HHHHHHHccC
Q 038237 87 SILTARANLG 96 (181)
Q Consensus 87 ~l~~~~~~~~ 96 (181)
..+.++.+.+
T Consensus 178 ~a~~aL~~~~ 187 (280)
T 1oyz_A 178 WAAFAININK 187 (280)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 5555555544
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.00 E-value=6 Score=23.46 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=29.7
Q ss_pred HHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 038237 24 SGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 77 (181)
..+...|++++|..+.+....||.+.|-+|-. .+.|.-+++..-+.++...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455666666666666666666666655533 34555555555555555544
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.23 E-value=6.5 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=12.1
Q ss_pred hccCCHHHHHHHhcccCCCcHHHHHHH
Q 038237 27 INREQVDIARQCFDQMPERDYVLWTTM 53 (181)
Q Consensus 27 ~~~~~~~~a~~~~~~m~~~~~~~~~~l 53 (181)
...|++++|..+.+....||.+.|-+|
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 344444444444444444444444443
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=80.62 E-value=9.1 Score=24.63 Aligned_cols=104 Identities=8% Similarity=0.007 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHhccCCH------HHHHHHhcccCC---C----cHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHcC
Q 038237 14 KDVISYTAIVSGYINREQV------DIARQCFDQMPE---R----DYVLWTTMIDGY---LRVNRFREALTLFQEIQTSN 77 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~---~----~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~ 77 (181)
.|..+|=..+...-+.|++ +...++|+.... | ....|--|---| -..+++++|.++|..+...+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4777888888888888998 777777776642 2 111122111111 22378999999999997653
Q ss_pred CCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchH
Q 038237 78 IMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIF 118 (181)
Q Consensus 78 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (181)
-+. ...|.....-=.+.|++..|..++..-+..+..|...
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 333 4444444444467899999999999999988776543
No 250
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.83 E-value=10 Score=24.84 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=56.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+.+.+..+|..+-...+..+++.+..+....+.+.+..++...-...+.++.+.++.+ +...+.++.. .++..+-.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~ 99 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 99 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 4444556777777777777777777666666666666677766666666776666533 3333333333 25666666
Q ss_pred HHHHHHHccCCcchH
Q 038237 87 SILTARANLGALELG 101 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a 101 (181)
..+.++.+.++.+..
T Consensus 100 ~a~~aL~~~~~~~~~ 114 (211)
T 3ltm_A 100 SAAVALGQIGDERAV 114 (211)
T ss_dssp HHHHHHHHHCCGGGH
T ss_pred HHHHHHHHhCcHHHH
Confidence 677777777664433
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.12 E-value=8.1 Score=24.62 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC--cchHHHHHHHHHHcCCCcchHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA--LELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
..+.+|.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+.+.|+-+......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 4578999999999999999999998642221 23444556666665432 345777888888777665544433
No 252
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.87 E-value=9.1 Score=23.58 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC--cchHHHHHHHHHHcCCCcchHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA--LELGEWIKTYIDKNKVKNDIFAGN 121 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 121 (181)
..+.++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+..++..+.+.|+-+......
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3578899999999999999999998632221 23445556666666542 356778888888777665544433
No 253
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=78.60 E-value=13 Score=25.05 Aligned_cols=87 Identities=8% Similarity=0.064 Sum_probs=57.0
Q ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCCc-chHHHH
Q 038237 51 TTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVKN-DIFAGN 121 (181)
Q Consensus 51 ~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~-~~~~~~ 121 (181)
-.+|+++.|+ ++++.|+..+.+|.+.| .|....--.++-+.-..|.-+ .|...++....-|.+- ....-.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laq 93 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLAD 93 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456666654 78999999999999999 998888888888887777543 3555666666777643 333333
Q ss_pred HHHHHhHhcCchHhHHH
Q 038237 122 ALIDMYCKCTVKFTWTT 138 (181)
Q Consensus 122 ~ll~~~~~~~~~~~~~~ 138 (181)
+.+..+..-.+..+|.+
T Consensus 94 aviyLA~aPKSNs~y~A 110 (204)
T 2r9g_A 94 VVVDLCLSPKSNSAYMA 110 (204)
T ss_dssp HHHHHHHSCCCCHHHHH
T ss_pred HHHHHHcCCccHHHHHH
Confidence 33333333224444444
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.73 E-value=8.8 Score=22.82 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 101 GEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
...-++.+-.....|++.+..+.+.+|-| .+++--|.++|+-++.+ +.+...+|-.+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRR----------------vND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRR----------------LNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44444555555677888887777777766 88888899999888876 2333556766665
No 255
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=77.25 E-value=5.7 Score=20.88 Aligned_cols=23 Identities=30% Similarity=0.409 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCh
Q 038237 146 SGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
.|+.+.|.+.+-+|...+..|+.
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCCC
Confidence 78888888888888888777763
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.22 E-value=19 Score=26.51 Aligned_cols=63 Identities=11% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCc---HHHHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCcc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERD---YVLWTTMIDGYLRVN--RFREALTLFQEIQTSNIMGD 81 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~ 81 (181)
...++.-|...|+.++|.+.++++..|. ......+..+.-+.+ ..+.+.+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 3455555666666666666666665542 222333333433322 23445555555555554433
No 257
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=75.64 E-value=20 Score=25.81 Aligned_cols=64 Identities=13% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC---cHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHcCCCccH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER---DYVLWTTMIDGYLRVNR--FREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 82 (181)
...++.-|...|+.++|.+.++++..| .......+..+.-+.++ .+.+.+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 445666666677777777777777665 22233444444444322 45566677777666654333
No 258
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=75.32 E-value=4.9 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.034 Sum_probs=32.4
Q ss_pred CCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHH
Q 038237 30 EQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREAL 67 (181)
Q Consensus 30 ~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 67 (181)
...+.|.++++.++..+..+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 57899999999999999999999999998777655443
No 259
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=74.77 E-value=16 Score=24.43 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=48.0
Q ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCC
Q 038237 51 TTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVK 114 (181)
Q Consensus 51 ~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~ 114 (181)
-.+|+++.|+ ++.+.|+..+.+|.+.|-.|....--.++-+.-..|.-+ .|...++....-|.+
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 79 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAY 79 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCc
Confidence 3456777664 789999999999999999998888888888887776533 345556666666653
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.22 E-value=42 Score=28.88 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCCC--------------------------cHHHHHHHHHHHHhcCcHHHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPER--------------------------DYVLWTTMIDGYLRVNRFREAL 67 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~~~~li~~~~~~~~~~~a~ 67 (181)
.++..--.+-.++...|++++|.+.|++.... -..=|..++.-+-+.+.++.+.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444344556788899999999999887521 1112667777788888888887
Q ss_pred HHHHHHHHc-CC-Ccc--HHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 68 TLFQEIQTS-NI-MGD--EFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 68 ~~~~~m~~~-~~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
++-..-.+. +- .++ ...|..+++++...|++++|...+-.+...... ......|+...|..+
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCC
Confidence 776554432 21 122 235888999999999999999888777655443 233455555555544
No 261
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.05 E-value=17 Score=23.80 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=85.2
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+.+.+..+|..+-...+.++++.+..+....+.+.+..++...-...+.++.+.++.+ +...+.++.. .++..+-.
T Consensus 55 L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~ 130 (211)
T 3ltm_A 55 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRI 130 (211)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHH
Confidence 3344456788888888899999888777777777777788888888888888887744 4444444444 37877878
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHH
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGL 143 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~ 143 (181)
..+.++.+.++.+. ...+..+.+ .++..+-...+.++.+.++......+...+
T Consensus 131 ~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 183 (211)
T 3ltm_A 131 AAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 88888888887543 333333432 345556666666666655444444444433
No 262
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=72.16 E-value=15 Score=22.93 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=42.8
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
+.+++.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 446778887665443 456666666777889999999988877777777666667666655
No 263
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=71.60 E-value=15 Score=22.64 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 72 EIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 72 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.|++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 46678877665443 4566666666 67789999999988877777777666677776665
No 264
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=71.51 E-value=26 Score=25.24 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=36.8
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCc--HHHHHHHHHHHHhcCc--HHHHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERD--YVLWTTMIDGYLRVNR--FREALTLFQEIQT 75 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 75 (181)
...+|.-|...|+.++|..-++++..|. ......+|......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999998763 2223333443333332 3445556666653
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.89 E-value=0.37 Score=37.45 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHhccCCHHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHH
Q 038237 14 KDVISYTAIVSGYINREQVDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~ 65 (181)
.|+..|.-+|.+..+.|.+++-...++..++ +++..=+.|+.+|++.++..+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence 3555677777777777777777777765554 355555677777777665443
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.83 E-value=16 Score=22.73 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 45 RDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
++..+--....++.++. +..+++.++++..+.+-.-....+--+.-|+.+.|+++.|....+.+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45555445555666665 456788899998876632245666678889999999999999999888763
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.60 E-value=32 Score=26.03 Aligned_cols=91 Identities=8% Similarity=-0.051 Sum_probs=61.5
Q ss_pred HHHHHHHhccCCHHHHHHHhcccCC----C-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----cCCCccH--HH
Q 038237 20 TAIVSGYINREQVDIARQCFDQMPE----R-----DYVLWTTMIDGYLRVNRFREALTLFQEIQT----SNIMGDE--FT 84 (181)
Q Consensus 20 ~~li~~~~~~~~~~~a~~~~~~m~~----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~--~~ 84 (181)
..+...+-..|++.+|..++.++.. . -+..+-..+..|...+++.+|..++.+... ..-.|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788999999888888752 1 244677778888888999999888888642 2122222 33
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 85 IVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
+......+...+++.+|...|.+...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556666677788877777666654
No 268
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=70.28 E-value=17 Score=22.73 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=40.0
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
+.+++.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 44566787766644 34455555556 6789999999988877777776666666666655
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.81 E-value=11 Score=26.59 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=43.7
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 55 DGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
....+.|+++++++....-.+.. +-|...-..++.-+|-.|+++.|..-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45667888888888887766654 3366677788888899999999988888887764
No 270
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=69.76 E-value=18 Score=22.78 Aligned_cols=60 Identities=7% Similarity=-0.037 Sum_probs=42.7
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
+.|++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 446778887666543 4566666666 67789999999988877777777666667776665
No 271
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=69.09 E-value=24 Score=23.91 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc-----hHHHHHHHHHHcCCC
Q 038237 46 DYVLWTTMIDGYLRV---NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE-----LGEWIKTYIDKNKVK 114 (181)
Q Consensus 46 ~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~ 114 (181)
+-..+-.+|+++.|+ ++++.|+..+.+|.+.|-.|....--.++-+.-..|.-+ .|...++....-|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 333444567777665 789999999999999999999888888888887776533 355566666666764
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.06 E-value=34 Score=25.62 Aligned_cols=60 Identities=17% Similarity=0.028 Sum_probs=46.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 52 TMIDGYLRVNRFREALTLFQEIQTSNIMGD-----EFTIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 52 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
-+..-|...|++.+|.+++.++.+.=-+.| ..+|-.-+..+...+++..+...+......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 578889999999999999999876321111 245667778888999999999999887654
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.28 E-value=35 Score=25.52 Aligned_cols=143 Identities=9% Similarity=-0.029 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC--------CcHHHHHHHHHHHHhcC-cHHHHHHHHHHHH----HcCCCc-cHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE--------RDYVLWTTMIDGYLRVN-RFREALTLFQEIQ----TSNIMG-DEF 83 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~----~~~~~p-~~~ 83 (181)
....+...|.+.|+.++..+++...+. ........||+.+.... ..+.-.++..+.. ...... ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999988874 25556888999998764 3444455544443 321111 111
Q ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc-
Q 038237 84 TIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA- 162 (181)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 162 (181)
.=.-+...+...|++.+|..++..+.+.--..|. -+.++..| -.-+..|...++..++...+......
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~---------lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQ---------LLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHH---------HHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 1225788899999999999999988875222222 13444433 34677788899999999999887654
Q ss_pred -CCCCChhhH
Q 038237 163 -SIKPDEVAY 171 (181)
Q Consensus 163 -~~~p~~~t~ 171 (181)
.+.|++.+-
T Consensus 170 ~ai~~~p~i~ 179 (394)
T 3txn_A 170 NAIYCPPKVQ 179 (394)
T ss_dssp HHSCCCHHHH
T ss_pred ccCCCCHHHH
Confidence 343444443
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.21 E-value=23 Score=22.94 Aligned_cols=130 Identities=11% Similarity=-0.010 Sum_probs=92.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHH
Q 038237 7 IFGTMKNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIV 86 (181)
Q Consensus 7 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 86 (181)
+.+.+..+|..+-...+.++++.+..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++..+-.
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~ 125 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRI 125 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHH
Confidence 3444556788888888889998888777777777777788888888888888887754 3444444443 36777777
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHH
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLA 144 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~ 144 (181)
..+.++.+.++.+.. ..+..+.+ .++..+-...+.++.+.++......+...+.
T Consensus 126 ~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~ 179 (201)
T 3ltj_A 126 AAAFALGEIGDERAV-EPLIKALK---DEDGWVRQSAADALGEIGGERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHTCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCchhHHHHHHHHHh
Confidence 888888888875443 33444433 3566777788888888887777777777764
No 275
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=66.13 E-value=9 Score=22.25 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHH
Q 038237 61 NRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWI 104 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 104 (181)
.+.+.|.++++.+++.| ...|..++.++...|....|..+
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 57899999999998874 35677888888777776655544
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=65.29 E-value=23 Score=22.37 Aligned_cols=68 Identities=7% Similarity=0.035 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 45 RDYVLWTTMIDGYLRVN---RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
++..+--....++.++. +..+++.++++..+.+-.-.....--+.-++.+.|+++.|....+.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 55555555566677765 456788899998875433345556677889999999999999999998873
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.54 E-value=35 Score=24.14 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=73.3
Q ss_pred HHHhccCCHHHHHHHhcccCC---CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHccCCc
Q 038237 24 SGYINREQVDIARQCFDQMPE---RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSN--IMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~ 98 (181)
..+.+.|+++++.+...+-.+ .|...-..++.-+|-.|++++|.+-++...+.. ..|....|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 456788999999888776654 388888899999999999999999999887743 22223344444433
Q ss_pred chHHHHHHHHHHcCCCcch-----HHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 99 ELGEWIKTYIDKNKVKNDI-----FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
+..-.++...+-.|.. .-...|+.+.. ....|+.++|.++-++..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~--------------~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNL--------------SMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHH--------------HHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHhc
Confidence 3333344333333321 12223333221 12379999999998888654
No 278
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.93 E-value=27 Score=21.96 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
-+.+++.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345677888765543 3566666666778899999999998877777777666677777666
No 279
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.85 E-value=49 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHc--CCCcc---HHHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 51 TTMIDGYLRVNRFREALTLFQEIQTS--NIMGD---EFTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 51 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
..|...+-..|++.+|.+++.++... |.... ...+...++.|...+++..|..+...+..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667788889999999999998743 33222 35677888999999999999999998753
No 280
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.81 E-value=17 Score=22.05 Aligned_cols=44 Identities=7% Similarity=-0.034 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 69 LFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 69 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+|+.+....+.|++..--.-+-.+...++++.|..++..+....
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 45666666787776665566666778899999999999988753
No 281
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.15 E-value=23 Score=21.00 Aligned_cols=31 Identities=16% Similarity=-0.122 Sum_probs=13.5
Q ss_pred HHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
..+...|++++|..+.+.. ..||...|-+|-
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc 77 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN----PWPALEPWFALC 77 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH
Confidence 3344455555554433322 244444444433
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.01 E-value=44 Score=24.11 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=41.9
Q ss_pred HHHhcCcHHHHHHH----HHHHHHcCCCccHHHHHHHHHHHHccCCcc-hHHHHHHHHHH----cCC--CcchHHHHHHH
Q 038237 56 GYLRVNRFREALTL----FQEIQTSNIMGDEFTIVSILTARANLGALE-LGEWIKTYIDK----NKV--KNDIFAGNALI 124 (181)
Q Consensus 56 ~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~ll 124 (181)
.+.+.|+...|-++ .+-..+.+++++.....-++..+.....-+ .=.++.+.+++ .|- .-++.....+-
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34456666555553 555566778888887777777776644322 23444444443 211 12455555555
Q ss_pred HHhHhcC
Q 038237 125 DMYCKCT 131 (181)
Q Consensus 125 ~~~~~~~ 131 (181)
..|.+.+
T Consensus 142 ~~~~~e~ 148 (312)
T 2wpv_A 142 SKLLEGD 148 (312)
T ss_dssp HHHHHTT
T ss_pred HHHhhcC
Confidence 5565544
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.85 E-value=37 Score=23.28 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 038237 53 MIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 53 li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666677777777766543
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.38 E-value=24 Score=20.96 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=13.4
Q ss_pred HHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHH
Q 038237 90 TARANLGALELGEWIKTYIDKNKVKNDIFAGNALI 124 (181)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 124 (181)
..+...|++++|..+.+.. ..||...|-+|-
T Consensus 48 sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc 78 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKL----AYPDLEPWLALC 78 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCC----CCchHHHHHHHH
Confidence 3344445555554443322 244444444433
No 285
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=60.17 E-value=38 Score=23.12 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHcCCCccHH-------HHHHHHHHHHccCCcchHHHHHHHHHHc
Q 038237 62 RFREALTLFQEIQTSNIMGDEF-------TIVSILTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
-++.|+.+|+.+.+.--.|+.. .--..+-.|.+.|.+++|..+++.....
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4688999999998765332322 1224567789999999999999998765
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.73 E-value=43 Score=24.70 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCC--cchHHHHHHHHHHcCCCcchHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGA--LELGEWIKTYIDKNKVKNDIFAGNALIDM 126 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 126 (181)
..+.+|.-|...|+.++|.+.++++..-... -..+...+..++-+.++ .+....++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999998743222 23444555556655433 34577788888887776655554444443
Q ss_pred h
Q 038237 127 Y 127 (181)
Q Consensus 127 ~ 127 (181)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 287
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=59.71 E-value=26 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNK 112 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (181)
+..+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|
T Consensus 216 ~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 216 FAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 3444556777777776666666666666677777777777665
No 288
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=59.59 E-value=19 Score=20.46 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHH
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFRE 65 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~ 65 (181)
.....++|.++++.++..+..+|..++.++.+.+...-
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 46788999999999999999999999999988876443
No 289
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.76 E-value=30 Score=21.43 Aligned_cols=57 Identities=2% Similarity=-0.050 Sum_probs=32.5
Q ss_pred HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 74 QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 74 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+.|++++.. -..+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 6 r~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 6 PPVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp ----CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3445543332 23455666666666677777777777766666666555566666555
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.75 E-value=40 Score=22.64 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCc
Q 038237 63 FREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYIDKNKVKN 115 (181)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (181)
..+..++|..|...||-- -..-|......+...|++.+|..+|+.=++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555544321 22334444444445555555555555555554444
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.35 E-value=35 Score=21.81 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=48.3
Q ss_pred HHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHc--CCCcchHHHHHHHHHhHhcC
Q 038237 63 FREALTLFQE-IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 63 ~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+.+++-+.+ +++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|--.-|+.+...|
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 4555555544 466888876543 46677888888888999999999987 76667766556666666665
No 292
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=56.00 E-value=23 Score=19.35 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=39.0
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHHcCCCcchHHHHHHHHHhHh
Q 038237 71 QEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDIFAGNALIDMYCK 129 (181)
Q Consensus 71 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 129 (181)
+.|++.|++++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|--..|..+.+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 44677888776655 35566666654 567788999999887666666665555555554
No 293
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=55.83 E-value=25 Score=19.98 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=27.4
Q ss_pred cCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHH
Q 038237 60 VNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGE 102 (181)
Q Consensus 60 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 102 (181)
....++|.++++.+... ....|..++.++...+....|.
T Consensus 49 ~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp SSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHHH
Confidence 56778888888888765 4566777788877766544433
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.61 E-value=39 Score=21.53 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=54.9
Q ss_pred HHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHH
Q 038237 33 DIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYID 109 (181)
Q Consensus 33 ~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (181)
+.+.+.|.+-.. .|+--...-| -|+.. .++..++|..|...||-- -..-|......+...|++.+|..|++.=+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl-~ya~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCL-KFAEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHH-HHHTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHH-HHHHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566655543 3333222222 22222 244889999998887643 44667777888888999999999999998
Q ss_pred HcCCCcchH
Q 038237 110 KNKVKNDIF 118 (181)
Q Consensus 110 ~~~~~~~~~ 118 (181)
+.+-.|-..
T Consensus 129 ~~~A~P~~r 137 (152)
T 4a1g_A 129 QNQAEPREF 137 (152)
T ss_dssp HTTCBSHHH
T ss_pred HcCCccHHH
Confidence 888887544
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.81 E-value=47 Score=22.28 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=41.7
Q ss_pred cCCHHHHHHHhcccCC-----CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 038237 29 REQVDIARQCFDQMPE-----RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81 (181)
Q Consensus 29 ~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (181)
.+...++..+|..|.. .-..-|...-..+-..|++.+|.++|..-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446688888888875 3555677777788888999999999999888887773
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.62 E-value=68 Score=24.05 Aligned_cols=94 Identities=5% Similarity=-0.120 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHhcccCC------CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---cCCCccHHHHHHH
Q 038237 18 SYTAIVSGYINREQVDIARQCFDQMPE------RDYVLWTTMIDGYLRVNRFREALTLFQEIQT---SNIMGDEFTIVSI 88 (181)
Q Consensus 18 ~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l 88 (181)
+...+...+.+.|+.++|.+.+.++.. .-...+-.+|..+...+++..+...+.+... .+-.|+....-..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788889999999999999999974 3455677888999999999999999988754 3333333221111
Q ss_pred --HHHHHccCCcchHHHHHHHHHHc
Q 038237 89 --LTARANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 89 --~~~~~~~~~~~~a~~~~~~~~~~ 111 (181)
...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12234567888888887776544
No 297
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=51.45 E-value=39 Score=20.57 Aligned_cols=45 Identities=7% Similarity=0.019 Sum_probs=26.2
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcC
Q 038237 87 SILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCT 131 (181)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 131 (181)
.+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455445556667777777766655555555555555555555
No 298
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=49.80 E-value=33 Score=22.06 Aligned_cols=57 Identities=9% Similarity=0.087 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcH--HHHHHHHHHHHhcCc--HHHHHHHHHHHHH
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDY--VLWTTMIDGYLRVNR--FREALTLFQEIQT 75 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 75 (181)
...+|.-|...++.++|.+-++++..|+. .....+|......++ -+.+-.++..+..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888876532 223333443333332 3345566666633
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.20 E-value=75 Score=23.22 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=36.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTL----FQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
|.++..-|.+.+++++|.+++- .-...+.+.|+...+-++ ++-..+.++++|.....-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4444444555555555544432 122234455655444443 3555567777887777777777665
Q ss_pred cCC
Q 038237 95 LGA 97 (181)
Q Consensus 95 ~~~ 97 (181)
...
T Consensus 107 ~~~ 109 (336)
T 3lpz_A 107 FQP 109 (336)
T ss_dssp SCT
T ss_pred CCC
Confidence 543
No 300
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=48.23 E-value=18 Score=19.02 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 149 GDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.++|.+.|-+|....-.++.-||.-.++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468889999998875555666777777665
No 301
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=47.85 E-value=50 Score=20.83 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHh
Q 038237 105 KTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 176 (181)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 176 (181)
++.+......|++.+..+.+.+|-+ .+++--|.++|+-.+.+ +.+...+|-.+++
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRR----------------vNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRR----------------LNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3333344566777766666666655 88888899999888877 3344666776665
No 302
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=47.57 E-value=43 Score=19.98 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=63.2
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 12 KNKDVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 12 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
..+|..+-...+.++++.|+.. ...+.+.+..++...-...+.++.+.++.+ +...+.++.+. ++..+-...+.+
T Consensus 22 ~~~~~~vR~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~-a~~~L~~~L~d---~~~~VR~~A~~a 96 (131)
T 1te4_A 22 ADENKWVRRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDER-AVEPLIKLLED---DSGFVRSGAARS 96 (131)
T ss_dssp CSSCCCSSSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-HHHHHHHHHHH---CCTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 3355544444555566666543 355555566678888788888888888744 44444444442 677777788888
Q ss_pred HHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 038237 92 RANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMY 127 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 127 (181)
+.+.|+.+ +...+..+.+ .++..+-...+.++
T Consensus 97 L~~~~~~~-a~~~L~~~l~---d~~~~vr~~A~~aL 128 (131)
T 1te4_A 97 LEQIGGER-VRAAMEKLAE---TGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHCSHH-HHHHHHHHTT---SCCTHHHHHHHHHG
T ss_pred HHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 88888643 4444444433 34544444444443
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.11 E-value=91 Score=23.61 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHH--------cCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCC----CcchHHHHHHHHHhHhc
Q 038237 63 FREALTLFQEIQT--------SNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKV----KNDIFAGNALIDMYCKC 130 (181)
Q Consensus 63 ~~~a~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~ 130 (181)
.++...++..... .++..+......+... ..|+...+..+++....... .....+-..+-....+.
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 3555555555543 2344555555555555 35788888888887765432 11222333333333222
Q ss_pred C------chHhHHHHHHHH---HHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 131 T------VKFTWTTMIVGL---AISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 131 ~------~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
. .-.+|+ +|.++ .+..+.+.|+.++.+|.+.|..|..+.=..++
T Consensus 245 ~~~~dk~gd~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~ 297 (447)
T 3pvs_A 245 SARFDNKGDRFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLA 297 (447)
T ss_dssp CCC---CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhccCCccchHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 112232 33333 35789999999999999999988765444443
No 304
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.04 E-value=52 Score=23.85 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccC-CcchHHHHHHHHHHcCCCcch
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLG-ALELGEWIKTYIDKNKVKNDI 117 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 117 (181)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.. .-+.+..++..+.+.|+-+..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567899999999999999999998642221 1223333344443321 223456666777666554433
No 305
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=45.23 E-value=23 Score=18.48 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.6
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCh
Q 038237 146 SGNGDKALDMFSQMLRAS-IKPDE 168 (181)
Q Consensus 146 ~~~~~~a~~~~~~m~~~~-~~p~~ 168 (181)
.-+++.|...|.+++..| ++|++
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 558999999999999875 66654
No 306
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.08 E-value=63 Score=20.94 Aligned_cols=108 Identities=6% Similarity=-0.105 Sum_probs=52.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHc-CCCccH-------HHHHHHHHHHHccCCcchHHHHHHHHHHc--CCCcchHHHHHH
Q 038237 54 IDGYLRVNRFREALTLFQEIQTS-NIMGDE-------FTIVSILTARANLGALELGEWIKTYIDKN--KVKNDIFAGNAL 123 (181)
Q Consensus 54 i~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l 123 (181)
+..+...+.++.|.-+.+.+... +..|+. .++..+.+++...+.+..|...|++..+. .+.-+....+.+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 44555556666666655554321 112221 24445566666777777777777664332 111011001000
Q ss_pred HH--Hh----HhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 124 ID--MY----CKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 124 l~--~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
-. .+ ....+...---+-.+|.+.+++++|+.+++.+-.
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00 00 0001222223366778889999999999887643
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.84 E-value=56 Score=20.25 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 35 ARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 35 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
+.+.+++.--+-+..-..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3333333322334444555666666666667778888887776555666655566666666644
No 308
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.79 E-value=95 Score=22.87 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHccCC-cchHHHHHHHHHHcCCCcchHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD----EFTIVSILTARANLGA-LELGEWIKTYIDKNKVKNDIFAGNAL 123 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 123 (181)
.-.++|.-|...|++++|.+.++++.. |+ ...+..+..++-+... -+.+..++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 457899999999999999999999864 43 2344444445444321 23456677777776655444433333
No 309
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.74 E-value=93 Score=24.62 Aligned_cols=54 Identities=11% Similarity=0.000 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELG 101 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 101 (181)
+..--.-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.|+|+++++
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 5555667777888888888888887777654333 33333 666777777777654
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.46 E-value=79 Score=21.58 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=55.4
Q ss_pred HHHHHHHhcccCC-CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHHH
Q 038237 32 VDIARQCFDQMPE-RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYID 109 (181)
Q Consensus 32 ~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (181)
++.+.+.|.+-.. .|-.-|--+=--|+.. .++...+|..|...||-- -..-|......+...|++.+|..||+.=+
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555555555543 2333232222223332 357778999999888643 34667778888888999999999999999
Q ss_pred HcCCCcc
Q 038237 110 KNKVKND 116 (181)
Q Consensus 110 ~~~~~~~ 116 (181)
+.+-.|-
T Consensus 178 ~~~A~P~ 184 (223)
T 4aez_C 178 RMKAKPF 184 (223)
T ss_dssp HHTCBSH
T ss_pred HcCCccH
Confidence 8887873
No 311
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.78 E-value=1.7e+02 Score=25.22 Aligned_cols=130 Identities=12% Similarity=-0.037 Sum_probs=73.7
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-------------------
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIM------------------- 79 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------- 79 (181)
...++..+.+.+..+-+.++..-.++ +...--.+-..+...|++++|.+.|.+... |+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 33456667777888777776655544 333333445577889999999999977421 110
Q ss_pred ----ccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHH
Q 038237 80 ----GDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDM 155 (181)
Q Consensus 80 ----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 155 (181)
.-..-|..++..+.+.+..+.+.+.-..-++....-+... ....|..++.++...|++++|...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~------------~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL------------SIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH------------HHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh------------HHHHHHHHHHHHHhhCCHHHHHHH
Confidence 0112356667777777777776665554444321111100 112345555555556666666666
Q ss_pred HHHHHHc
Q 038237 156 FSQMLRA 162 (181)
Q Consensus 156 ~~~m~~~ 162 (181)
+-.+.+.
T Consensus 961 L~~~pd~ 967 (1139)
T 4fhn_B 961 LMVLSTT 967 (1139)
T ss_dssp HHHHHHS
T ss_pred HHhCCCH
Confidence 6555443
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.23 E-value=59 Score=19.72 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=28.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHhhh
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAR 178 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 178 (181)
.++..+...+.+-.|.++++.+.+.+-..+..|..-.|+.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L 55 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSM 55 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 45555556777888999999998887666666665555443
No 313
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=41.02 E-value=97 Score=22.17 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=24.6
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+..+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|..
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 333444555555555555555555555555566666666555543
No 314
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=41.00 E-value=49 Score=19.55 Aligned_cols=50 Identities=24% Similarity=0.105 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038237 118 FAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 167 (181)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 167 (181)
..+..|..=..+.|...|...|+.++-+.+.-+.|..+........-.|+
T Consensus 59 q~~~mL~~W~~r~G~~AT~~~L~~AL~~~~~~dvae~l~~~~~~~~~~p~ 108 (110)
T 1wxp_A 59 RAKQLLVAWQDQEGVHATPENLINALNKSGLSDLAESLTNDNETNSSGPS 108 (110)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCHHHHHHHHCCCSSCSCCCC
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHcCcHHHHHHHHHHhhccCCCCC
Confidence 33444433333444556777788888889999999887766654434443
No 315
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=40.93 E-value=27 Score=19.48 Aligned_cols=16 Identities=0% Similarity=0.135 Sum_probs=7.1
Q ss_pred CChhHHHHHHHHHhcc
Q 038237 14 KDVISYTAIVSGYINR 29 (181)
Q Consensus 14 ~~~~~~~~li~~~~~~ 29 (181)
|++-||+-+...+-+.
T Consensus 34 pgVnTW~qI~el~qkk 49 (81)
T 2ko4_A 34 PNINTWQQVTALAQQK 49 (81)
T ss_dssp TTTCBHHHHHHHHTTT
T ss_pred CCcchHHHHHHHHHcC
Confidence 3444454444444333
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.97 E-value=74 Score=20.52 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=56.0
Q ss_pred HHHHHHHhcccCC--CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHccCCcchHHHHHHHH
Q 038237 32 VDIARQCFDQMPE--RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMG-DEFTIVSILTARANLGALELGEWIKTYI 108 (181)
Q Consensus 32 ~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (181)
++.+.+.|..-.. .|+--...-| -|+.. .++..++|..|...||-- -..-|......+-..|++..|..||+.=
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl-~ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWL-KLGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHH-HHHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHH-HHHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555443 3433333322 22221 144777899999988743 3466777777888899999999999999
Q ss_pred HHcCCCcchHH
Q 038237 109 DKNKVKNDIFA 119 (181)
Q Consensus 109 ~~~~~~~~~~~ 119 (181)
++.+-.|-...
T Consensus 123 i~~~A~P~~~L 133 (164)
T 2wvi_A 123 IQQKAEPLERL 133 (164)
T ss_dssp HHTTCBSHHHH
T ss_pred HHcCCCcHHHH
Confidence 99988885543
No 317
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.84 E-value=43 Score=20.67 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 51 TTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 51 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 455666666666667888888888777666766666666666666654
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.51 E-value=71 Score=20.22 Aligned_cols=21 Identities=5% Similarity=0.049 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHcCCCCChh
Q 038237 149 GDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 149 ~~~a~~~~~~m~~~~~~p~~~ 169 (181)
...-.++++-+.+.|..|+..
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTTCC
T ss_pred hhhHHHHHHHHHHCCCCCCcc
Confidence 333467777777777777643
No 319
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.10 E-value=58 Score=19.07 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHH-----HHcCCCcchHHHHH
Q 038237 64 REALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYI-----DKNKVKNDIFAGNA 122 (181)
Q Consensus 64 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~ 122 (181)
..+.++.+++..-|+.|+..+...++.-|...+- + +.++.++. -..|..|+....+.
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 3456677777777888888888888888777663 2 33322222 12366666655443
No 320
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=37.87 E-value=23 Score=24.35 Aligned_cols=79 Identities=5% Similarity=-0.013 Sum_probs=53.9
Q ss_pred HHHHHHHhcccCC-----------CcHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHcCCC-ccHHHHHHHHH
Q 038237 32 VDIARQCFDQMPE-----------RDYVLWTTMIDGYLRVN---------RFREALTLFQEIQTSNIM-GDEFTIVSILT 90 (181)
Q Consensus 32 ~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 90 (181)
.+.|..++.+|-- ....-|..+..++.+.| +.+...++++-..+.|++ .=++.|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 5778888888864 25556788888888876 455666666667776653 22366777776
Q ss_pred HHHccCCcchHHHHHHHHHH
Q 038237 91 ARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~ 110 (181)
--.-.-+.++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65555677788888877664
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.42 E-value=79 Score=20.10 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=44.1
Q ss_pred HHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHccCCcch
Q 038237 34 IARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTS--NIMGDEFTIVSILTARANLGALEL 100 (181)
Q Consensus 34 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 100 (181)
.+.+.+++---+-+..-..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+..
T Consensus 19 ~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3334444333344555667777777777777888999998877 666666666666677777775543
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.34 E-value=2e+02 Score=24.24 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=54.3
Q ss_pred HHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc--------------------
Q 038237 22 IVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD-------------------- 81 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-------------------- 81 (181)
++..|...|..+-+.++..-.+.....+ =.+-.+|...|++++|.+.|++... |+..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 6667777888888887776666533333 3456678889999999999987532 22111
Q ss_pred ---HHHHHHHHHHHHccCCcchHHHHHHHHHH
Q 038237 82 ---EFTIVSILTARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 82 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 110 (181)
..-|..++..+-+.+.++-+.++-+..++
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 12355556666666666665555554444
No 323
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.31 E-value=1.1e+02 Score=21.00 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=49.9
Q ss_pred HHHHHhccCCHHHHHHHhcccCC-----C-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 038237 22 IVSGYINREQVDIARQCFDQMPE-----R-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTA 91 (181)
Q Consensus 22 li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 91 (181)
-++.+.-..++++|.+++++..+ + +...-...+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 46777788889988888876653 1 111222333333333333444445555533 3455666677788
Q ss_pred HHccCCcchHHHHHHH
Q 038237 92 RANLGALELGEWIKTY 107 (181)
Q Consensus 92 ~~~~~~~~~a~~~~~~ 107 (181)
+.+.|+.+.|.++|=+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8899999998887643
No 324
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=34.68 E-value=16 Score=18.36 Aligned_cols=23 Identities=4% Similarity=0.177 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHHcCCCCChh
Q 038237 147 GNGDKALDMFSQMLRASIKPDEV 169 (181)
Q Consensus 147 ~~~~~a~~~~~~m~~~~~~p~~~ 169 (181)
.+..+|.++++.+...|-.|+..
T Consensus 7 RDv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHH
Confidence 46778999999999998777543
No 325
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=34.41 E-value=69 Score=25.45 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 038237 46 DYVLWTTMIDGYLRVNRFREALTLFQE 72 (181)
Q Consensus 46 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 72 (181)
|..+|-..+.-+...|......+++.+
T Consensus 27 d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 27 DFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp --CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 445555555555555555555555544
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.44 E-value=97 Score=19.96 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 99 ELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
+....+|..|...|+...... .|-.--..+-..|++.+|.++|+.-.+.+-+|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al---------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ---------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 558889999999887654432 2223333445599999999999999998877754
No 327
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=33.44 E-value=24 Score=24.59 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=53.5
Q ss_pred HHHHHHHhcccCC-----------CcHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHcCCC-ccHHHHHHHHH
Q 038237 32 VDIARQCFDQMPE-----------RDYVLWTTMIDGYLRVN---------RFREALTLFQEIQTSNIM-GDEFTIVSILT 90 (181)
Q Consensus 32 ~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 90 (181)
.+.|..++.+|-- ....-|..+..++++.| +.+...++++-..+.|++ .=++.|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 5777788888763 25556778888888876 456666677777777753 22356777776
Q ss_pred HHHccCCcchHHHHHHHHHH
Q 038237 91 ARANLGALELGEWIKTYIDK 110 (181)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~ 110 (181)
--.-.-+++++.+++..+++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65555577788888877765
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.33 E-value=68 Score=19.56 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 47 YVLWTTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 47 ~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
+..-..++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 334445666666665 56678888888888776666666666666666666543
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.26 E-value=72 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
.|..+++.|+-++-+|.+.|-.|..+.=..++
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi 77 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLI 77 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56889999999999999999888665544444
No 330
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.08 E-value=97 Score=19.85 Aligned_cols=93 Identities=9% Similarity=-0.085 Sum_probs=55.0
Q ss_pred HHhccCCHHHHHHHhcccCCC-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHcc-CCcc
Q 038237 25 GYINREQVDIARQCFDQMPER-DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFT---IVSILTARANL-GALE 99 (181)
Q Consensus 25 ~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~-~~~~ 99 (181)
..++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+.+.|..+|... .+.|..++... .+..
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 346788988888877754432 211122444455666777777778888888888776532 33444443332 2233
Q ss_pred hHHHHHHHHHHcCCCcch
Q 038237 100 LGEWIKTYIDKNKVKNDI 117 (181)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~ 117 (181)
...++.+.+.+.|..++.
T Consensus 92 ~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS
T ss_pred hHHHHHHHHHHCCCCCCc
Confidence 445677778887766543
No 331
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.98 E-value=58 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038237 144 AISGNGDKALDMFSQMLRASIKPDEVAYVGVL 175 (181)
Q Consensus 144 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 175 (181)
.|..+++.|+-++-+|.+.| .|..+.=..++
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi 55 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMV 55 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 46889999999999999999 77555444443
No 332
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=31.97 E-value=35 Score=22.99 Aligned_cols=52 Identities=2% Similarity=-0.125 Sum_probs=23.1
Q ss_pred HHhhhcCCC--ChhHHHHHHHHHhccCCHHHHHHHhcccCCCcHHHHHHHHHHH
Q 038237 6 EIFGTMKNK--DVISYTAIVSGYINREQVDIARQCFDQMPERDYVLWTTMIDGY 57 (181)
Q Consensus 6 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~ 57 (181)
.+|+++++| ....|..++.+.......+....++..++.++..+...|+.-+
T Consensus 92 ~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L 145 (214)
T 2xs6_A 92 SFLLALPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHL 145 (214)
T ss_dssp HHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGGGSTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 345555554 3344555555544332222222444445545555555444443
No 333
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=31.82 E-value=1.2e+02 Score=21.88 Aligned_cols=45 Identities=4% Similarity=-0.097 Sum_probs=28.7
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCC
Q 038237 70 FQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 70 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (181)
+..+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|..
T Consensus 232 ~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~ 276 (345)
T 2qfz_A 232 HRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG 276 (345)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC
Confidence 334455566666666666666666666666777777777766543
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.52 E-value=96 Score=19.33 Aligned_cols=55 Identities=7% Similarity=0.032 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcc
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALE 99 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 99 (181)
+-+..-..++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-+.
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4455555677777777667788888888887766666666666667777666543
No 335
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=31.14 E-value=52 Score=21.72 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 038237 137 TTMIVGLAISGNGDKALDMFSQMLR 161 (181)
Q Consensus 137 ~~li~~~~~~~~~~~a~~~~~~m~~ 161 (181)
-..|.|+.+.|++++|.++.+++..
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578888999999999999998854
No 336
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=29.14 E-value=1.1e+02 Score=21.84 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHHccCCc
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQT--SNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
.-.|+++.. .++..+|+++|+++.. .|..| ......+.+.+...+.+
T Consensus 210 v~~l~~ai~-~~~~~~a~~~~~~l~~~~~g~~~-~~~i~~~~r~l~~~~~~ 258 (305)
T 2gno_A 210 CRELLERFS-KVESKEFFALFDQVTNTITGKDA-FLLIQRLTRIILHENTW 258 (305)
T ss_dssp HHHHHHHHH-HSCGGGHHHHHHHHHHHSCTHHH-HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHhhchh
Confidence 345566554 3578888888888887 77766 34444444555444433
No 337
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.12 E-value=1.1e+02 Score=18.92 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
-..++..+...+ .-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344444444444 456777777777666555665555555555555543
No 338
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=27.82 E-value=1.7e+02 Score=20.91 Aligned_cols=99 Identities=10% Similarity=0.093 Sum_probs=52.0
Q ss_pred HHHHHHHHHH-HHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 64 REALTLFQEI-QTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 64 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
++..+++... .+.|+..+......+.... .|++..+..+++.....+-. ..+...+-........ .....++.+
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~--~G~~r~~~~~l~~~~~~~~~--~i~~~~v~~~~~~~~~-~~~~~l~~~ 255 (373)
T 1jr3_A 181 EQIRHQLEHILNEEHIAHEPRALQLLARAA--EGSLRDALSLTDQAIASGDG--QVSTQAVSAMLGTLDD-DQALSLVEA 255 (373)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHS--SSCHHHHHHHHHHHHHHTTT--CBCHHHHHHHTTCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcCC--cccHHHHHHHhCCCCH-HHHHHHHHH
Confidence 4455555443 3446655555544444332 66777777777665533211 1111111111111111 122245555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCh
Q 038237 143 LAISGNGDKALDMFSQMLRASIKPDE 168 (181)
Q Consensus 143 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 168 (181)
.. .++...+.++++++...|..|..
T Consensus 256 ~~-~~~~~~~~~~~~~l~~~g~~~~~ 280 (373)
T 1jr3_A 256 MV-EANGERVMALINEAAARGIEWEA 280 (373)
T ss_dssp HH-HTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCcCHHH
Confidence 54 56888999999999988887653
No 339
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.72 E-value=78 Score=17.73 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHccCCc
Q 038237 62 RFREALTLFQEIQT-SNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 62 ~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
..+++...|.+|+. .+|.| ..+|...+...+.-.++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p-~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSA-FSTWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCS-SSCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCCcc
Confidence 35788888888875 45554 45777777766655444
No 340
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=26.67 E-value=96 Score=17.79 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHhcccCCCcHHHHHHHHHHHHh
Q 038237 28 NREQVDIARQCFDQMPERDYVLWTTMIDGYLR 59 (181)
Q Consensus 28 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 59 (181)
+....+++.++++.++..+..+|..++.++..
T Consensus 47 ~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~ 78 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE 78 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 34566777777777777777777777777654
No 341
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.64 E-value=1.3e+02 Score=19.25 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
...++|.-|...++.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356789999999999999999999874
No 342
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.60 E-value=1.2e+02 Score=18.84 Aligned_cols=73 Identities=12% Similarity=-0.052 Sum_probs=45.9
Q ss_pred CCCccHHHHHHHHHHHHccCC---cchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHHH
Q 038237 77 NIMGDEFTIVSILTARANLGA---LELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKAL 153 (181)
Q Consensus 77 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 153 (181)
+=.|+..+--...-++.+..+ ...+..+++.+.+.+..-....+ --+--|+.+.|++++|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~L----------------YyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECL----------------YYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH----------------HHHHHHHHHHTCHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHH----------------HHHHHHHHHhhhHHHHH
Confidence 334566555555566666654 44678888888876532112222 22334556699999999
Q ss_pred HHHHHHHHcCCCCC
Q 038237 154 DMFSQMLRASIKPD 167 (181)
Q Consensus 154 ~~~~~m~~~~~~p~ 167 (181)
+..+.+.+ +.|+
T Consensus 99 ~y~d~lL~--~eP~ 110 (134)
T 3o48_A 99 RYVDTLFE--HERN 110 (134)
T ss_dssp HHHHHHHT--TCTT
T ss_pred HHHHHHHh--hCCC
Confidence 99999887 4554
No 343
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.21 E-value=1.4e+02 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 038237 138 TMIVGLAISGNGDKALDMFSQMLRA 162 (181)
Q Consensus 138 ~li~~~~~~~~~~~a~~~~~~m~~~ 162 (181)
..+..|.+.|.+++|.++|++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 4566788899999999999996544
No 344
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.07 E-value=80 Score=17.08 Aligned_cols=30 Identities=13% Similarity=0.355 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 038237 148 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 177 (181)
Q Consensus 148 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 177 (181)
..++|.+.|.+|....-.+...||...+.-
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~ 42 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKM 42 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHH
Confidence 468899999999887433445566666554
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.06 E-value=83 Score=16.81 Aligned_cols=46 Identities=7% Similarity=-0.109 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHc
Q 038237 48 VLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARAN 94 (181)
Q Consensus 48 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 94 (181)
..++-+++.+++..-.++++..+++..+.|. .+..+|-.-.+..++
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3466778888888889999999999998885 366666665666555
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.89 E-value=1.4e+02 Score=19.13 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=40.1
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCc--cHHHHHHHHH-HH-----HccCCcchHHHHHHHHHHc
Q 038237 58 LRVNRFREALTLFQEIQTSNIMG--DEFTIVSILT-AR-----ANLGALELGEWIKTYIDKN 111 (181)
Q Consensus 58 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~~ 111 (181)
.+.|++-+|.++|++..+..-.| ....|-.||. .. .+.|+...|..++.+-...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34499999999999998876556 5566666666 22 3578999999998887663
No 347
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.75 E-value=1.3e+02 Score=21.38 Aligned_cols=92 Identities=12% Similarity=-0.015 Sum_probs=50.1
Q ss_pred HHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHHHHHcCChhHH
Q 038237 73 IQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVGLAISGNGDKA 152 (181)
Q Consensus 73 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~~~~~~~~~~a 152 (181)
..+.|+..+......++.. -.|+...+...++++.-..- ....+...+-......... ..-.++.+.. .|+...|
T Consensus 155 ~~~~g~~i~~~a~~~l~~~--~~gdl~~~~~elekl~l~~~-~~~It~e~V~~~~~~~~~~-~if~l~~ai~-~~d~~~a 229 (343)
T 1jr3_D 155 AKQLNLELDDAANQVLCYC--YEGNLLALAQALERLSLLWP-DGKLTLPRVEQAVNDAAHF-TPFHWVDALL-MGKSKRA 229 (343)
T ss_dssp HHHTTCEECHHHHHHHHHS--STTCHHHHHHHHHHHHHHCT-TCEECHHHHHHHHHHHCCC-CHHHHHHHHT-TSCHHHH
T ss_pred HHHcCCCCCHHHHHHHHHH--hchHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHhhhhcC-CHHHHHHHHH-CCCHHHH
Confidence 4456766666555444433 24677777777777765310 1112222222222222111 1223444443 6889999
Q ss_pred HHHHHHHHHcCCCCChh
Q 038237 153 LDMFSQMLRASIKPDEV 169 (181)
Q Consensus 153 ~~~~~~m~~~~~~p~~~ 169 (181)
+++++++...|..|...
T Consensus 230 l~~l~~l~~~g~~~~~i 246 (343)
T 1jr3_D 230 LHILQQLRLEGSEPVIL 246 (343)
T ss_dssp HHHHTSSTTTTCCHHHH
T ss_pred HHHHHHHHHCCCcHHHH
Confidence 99999998888877554
No 348
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.94 E-value=3.1e+02 Score=24.51 Aligned_cols=33 Identities=3% Similarity=0.056 Sum_probs=18.8
Q ss_pred hcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 038237 59 RVNRFREALTLFQEIQTSNIMGDEFTIVSILTARA 93 (181)
Q Consensus 59 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 93 (181)
..+++..|++++.++.+.. |+...|..++..+.
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAING 1328 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHH
Confidence 4566666666666666543 45555555544443
No 349
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=23.73 E-value=94 Score=20.10 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHHH
Q 038237 63 FREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIVG 142 (181)
Q Consensus 63 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~~ 142 (181)
.+.|.++++.+...|-.|+....... ...+.....+++........ -...|+.++..+...+|..+.+.+-.
T Consensus 65 ~~HA~~l~e~i~~lGG~p~l~~i~~p------~~~~~~~~e~le~aL~~E~~-~~~~~~~l~~~A~~~~D~~t~~~l~~- 136 (181)
T 3bvf_A 65 YEHAKKLIIFLNENNVPVQLTSISAP------EHKFEGLTQIFQKAYEHEQH-ISESINNIVDHAIKSKDHATFNFLQW- 136 (181)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHTHH-
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHhHHHHHHH-
Confidence 46778888888887766643221100 12334455555555443222 44456666666666677777666655
Q ss_pred HHH--cCChhHHHHHHHHHHHcCC
Q 038237 143 LAI--SGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 143 ~~~--~~~~~~a~~~~~~m~~~~~ 164 (181)
+.. .........+++.+..-|.
T Consensus 137 ~l~eqvEe~~~l~~~l~~l~~~g~ 160 (181)
T 3bvf_A 137 YVAEQHEEEVLFKDILDKIELIGN 160 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 331 1333345555555555454
No 350
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.58 E-value=70 Score=16.50 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHcCCCccH
Q 038237 62 RFREALTLFQEIQTSNIMGDE 82 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~ 82 (181)
+++.|...|.+. +..|+|+.
T Consensus 34 d~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHH
Confidence 567777777765 33455543
No 351
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.99 E-value=81 Score=19.30 Aligned_cols=51 Identities=10% Similarity=-0.105 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEW 103 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 103 (181)
|.-.|...+.+++.+-|.++++-..+.| +...|.+.+..|-..=+++-+.+
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3445555667777777777777777764 66777777777766655555544
No 352
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.98 E-value=1.5e+02 Score=18.78 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=29.7
Q ss_pred HHHHhcccCCC-----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 038237 35 ARQCFDQMPER-----DYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGD 81 (181)
Q Consensus 35 a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 81 (181)
+.++|..|.+. -..-|..--..+-..|++.+|.++|..-.+.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56666666653 333455666666666777777777777766666663
No 353
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=22.06 E-value=63 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 038237 50 WTTMIDGYLRVNRFREALTLFQEIQT 75 (181)
Q Consensus 50 ~~~li~~~~~~~~~~~a~~~~~~m~~ 75 (181)
-|.|+..|...|+++.|.+++.+++.
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 47888889999999999999987543
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.96 E-value=1.5e+02 Score=18.39 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCc
Q 038237 51 TTMIDGYLRVN-RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGAL 98 (181)
Q Consensus 51 ~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 98 (181)
..++..+...+ ..-.|.++++.+.+.+...+..|.--.++.+...|-+
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34445554444 4556677777776665555555555555555555544
No 355
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.85 E-value=57 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHc---cCCcchHHHHHHHHHHcCCC
Q 038237 61 NRFREALTLFQEIQTSNIM-GDEFTIVSILTARAN---LGALELGEWIKTYIDKNKVK 114 (181)
Q Consensus 61 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 114 (181)
..+++|.+++..|++.-+. -.+..||..+..+-. .+.. ...+..+++.++.
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 3678888888888765443 256778888777643 2333 4445556665543
No 356
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.75 E-value=1.3e+02 Score=17.45 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH
Q 038237 49 LWTTMIDGYLRVNRFREALTLFQEI 73 (181)
Q Consensus 49 ~~~~li~~~~~~~~~~~a~~~~~~m 73 (181)
.+.-.-..+.+.|++++|++....-
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4556677888888888888776654
No 357
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.57 E-value=66 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=24.0
Q ss_pred HHHHHHHHhccCCHHHHHHHhcccCCC
Q 038237 19 YTAIVSGYINREQVDIARQCFDQMPER 45 (181)
Q Consensus 19 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 45 (181)
-|.+++.|-.+|+++.|.++|+.++..
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 467889999999999999999998864
No 358
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.51 E-value=1.9e+02 Score=18.89 Aligned_cols=50 Identities=6% Similarity=-0.126 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHcc
Q 038237 45 RDYVLWTTMIDGYLRVNRFREALTLFQEIQTSNIMGDEFTIVSILTARANL 95 (181)
Q Consensus 45 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 95 (181)
|....++-|+..++...-.++++..+.+....|. .+..+|-.-++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4666789999999999899999999999999886 4666776666666653
No 359
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=20.30 E-value=1.7e+02 Score=18.44 Aligned_cols=96 Identities=5% Similarity=-0.140 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHccCCcchHHHHHHHHHHcCCCcchHHHHHHHHHhHhcCchHhHHHHHH
Q 038237 62 RFREALTLFQEIQTSNIMGDEFTIVSILTARANLGALELGEWIKTYIDKNKVKNDIFAGNALIDMYCKCTVKFTWTTMIV 141 (181)
Q Consensus 62 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~li~ 141 (181)
..+.|.++++.+...|-.|+...... -...+......++........ -...|+.++..+...+|..+.+.+-.
T Consensus 50 E~~HA~~l~~~i~~~gG~~~l~~i~~------p~~~~~~~~e~l~~al~~E~~-~~~~~~~l~~~a~~~~D~~~~~~l~~ 122 (167)
T 1krq_A 50 ESDHAKKLITYLNETDSHVELQEVKQ------PEQNFKSLLDVFEKTYEHEQF-ITKSINTLVEHMLTHKDYSTFNFLQW 122 (167)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCCCC------CCCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCC------CCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 34677788888887776554322110 012334455555555443222 22236666666666667766666655
Q ss_pred HHHH-cCChhHHHHHHHHHHHcCC
Q 038237 142 GLAI-SGNGDKALDMFSQMLRASI 164 (181)
Q Consensus 142 ~~~~-~~~~~~a~~~~~~m~~~~~ 164 (181)
.... ....+....+++.+..-|.
T Consensus 123 ~l~Eq~e~~~~l~~~l~~l~~~g~ 146 (167)
T 1krq_A 123 YVSEQHEEEALFRGIVDKIKLIGE 146 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 1133344455555554444
Done!