Citrus Sinensis ID: 038243

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680
MNNWLGFSLSPQEQLPSSQTDHHHHHQDHSQDSVSHRLGFNSDELSGAVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNNNNARTSNNGGENSNNNNSSIGLSMIKTWLRNQPAPATGPAPAPAQAEAVSMNGSGGSSAQSLSLSMSTGSHQTGAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTADHGWPAIAAFQQAQAHHHHQHQPYSSLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNMESSSLEHSCSSNNSVIYNNGDHTNGSYQVGYGSNNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYYLPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccEEEccccccEEccccc
cccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHccccccccccEEcccccccccccEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEccccccccHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccEcccccHEEEccccccccccccccccccccccccccccccccccHcccccEEcccccccccccccccccccccccccccccccccccEEEccccEEEEEccc
mnnwlgfslspqeqlpssqtdhhhhhqdhsqdsvshrlgfnsdelsgavvsgdcfdltsadsttASFSILEAFNrnnnhsqewnmkglgmnTDAMLMATscndqnqepklenfldghsfsnheqklhgctsvydtptastvtgdymfqncslqlpldennnnnartsnnggensnnnnssIGLSMIKTWlrnqpapatgpapapaqaeavsmngsggssaqSLSLSmstgshqtgaieavprksidtfgqrtsiyrgvtrhrwtgryeahlwdnscrregqtrkgrqggydkeEKAARAYDLAALKYwgtttttnfpisnYEKEVEEMKHMTRQEYVASLRRkssgfsrgasiyrgvtrhhqhgrwqarigrvagnkdlylgtfSTQEEAAEAYDIAAIKFRglnavtnfdmtrydvnsilesstlpiggAAKRLKDAEQAAEmtidrptvvaddenmssqltadhgWPAIAAFQQAqahhhhqhqpysslqpfgygqriwckQEQDEFNHqlqlgsnisnthnffqpsvmhnlmnmessslehscssnnsviynngdhtngsyqvgygsnnnnnnggfvipmgtviasnndhgfgesDHQAAAKALAFENmfssstsssdpyqarnlyylpqqqsSASLVKAAgaydnwvptavptlaqrsgnialchgaptftvwndt
MNNWLGFSLSPQEQLPSSQTDHHHHHQDHSQDSVSHRLGFNSDELSGAVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNNNNARtsnnggensnnnNSSIGLSMIKTWLRNQPAPATGPAPAPAQAEAVSMNGSGGSSAQSLSLSMSTGSHQtgaieavprksidtfgqrtsiyrgvtrhrwtgryeahlwdnscrregqtrkgrqggydkeeKAARAYDLAAlkywgtttttnfpisNYEKEVEEMKHMTRQEYVAslrrkssgfsrgasiyrgvtrhhqhgrwqarigrvagNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILesstlpigGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTADHGWPAIAAFQQAQAHHHHQHQPYSSLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNMESSSLEHSCSSNNSVIYNNGDHTNGSYQVGYGSNNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYYLPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
MNNWLGFslspqeqlpssqtdhhhhhqdhsqdsvshRLGFNSDELSGAVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDEnnnnnartsnnggensnnnnssIGLSMIKTWLRNQpapatgpapapaqaeaVSMNgsggssaqslslsmstgsHQTGAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQeeaaeaYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTADHGWPaiaafqqaqahhhhqhqPYSSLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNMessslehscssnnsVIYNNGDHTngsyqvgygsnnnnnnggFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFssstsssDPYQARNLYYLPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
**********************************************GAVVSGDCFDLTSADSTTASFSILEAFN**************************************************KLHGCTSVYDTPTASTVTGDYMFQNCSL********************************************************************************************IDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSC********************ARAYDLAALKYWGTTTTTNFPISNYE***************************GASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPI****************************************************************PFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFF**********************************************************TV*****************************************LYYL*******SLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVW***
MNNWLGFS***********************************ELSGAVVSGD*************FSILEAFNRN**********************************ENFLDGH*********************************************************************************************************************************************TRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQE*********************VTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRY******************************************************************************************************************************************************************************************************************************************WVPTAV************CHGAPTFTVWN**
***********************************HRLGFNSDELSGAVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNNNNARTSNNGGENSNNNNSSIGLSMIKTWLRNQ*****************************************GAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRR****************KAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGV*********QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTADHGWPAIAAF***************SLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNME********SSNNSVIYNNGDHTNGSYQVGYGSNNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENM*********PYQARNLYYLPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
*****************************************SD**S*AVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSF********GCTSVYDTPTASTVTGDYMFQNCSLQLPL*E*N***ARTSNNGGENSNNNNSSIGLSMIKTWLRNQP*******************************************************QRTSIYRGVTRHRWTGRYEAHLWDNSCRREG*TRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPIGG**KR*********************************WPAIAAFQQAQAHHHHQHQPYSSLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNMESSSLEHSCSSNNSVIYNNGDHTNGSYQVGYGSNNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYYLPQQ*SSAS*******YDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
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MNNWLGFSLSPQEQLPSSQTDHHHHHQDHSQDSVSHRLGFNSDELSGAVVSGDCFDLTSADSTTASFSILEAFNRNNNHSQEWNMKGLGMNTDAMLMATSCNDQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNNNNARTSNNGGENSNNNNSSIGLSMIKTWLRNQPAPATGPAPAPAQAEAVSMNGSGGSSAQSLSLSMSTGSHQTGAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTADHGWPAIAAFQQAQAHHHHQHQPYSSLQPFGYGQRIWCKQEQDEFNHQLQLGSNISNTHNFFQPSVMHNLMNMESSSLEHSCSSNNSVIYNNGDHTNGSYQVGYGSNNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYYLPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query680 2.2.26 [Sep-21-2011]
Q6PQQ4584 AP2-like ethylene-respons yes no 0.802 0.934 0.429 1e-125
Q8LSN2579 AP2-like ethylene-respons N/A no 0.789 0.927 0.435 1e-124
Q8L3U3579 AP2-like ethylene-respons N/A no 0.772 0.906 0.434 1e-124
Q5YGP7568 AP2-like ethylene-respons no no 0.530 0.635 0.579 1e-110
Q5YGP8574 AP2-like ethylene-respons no no 0.355 0.421 0.762 1e-107
Q6PQQ3558 AP2-like ethylene-respons no no 0.304 0.370 0.829 1e-103
Q52QU2581 AP2-like ethylene-respons no no 0.326 0.382 0.777 2e-94
Q1PFE1415 AP2-like ethylene-respons no no 0.288 0.472 0.814 3e-94
Q38914555 AP2-like ethylene-respons no no 0.295 0.362 0.799 3e-93
Q6J9N8498 AP2-like ethylene-respons no no 0.295 0.403 0.785 1e-87
>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2 Back     alignment and function desciption
 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 307/715 (42%), Positives = 373/715 (52%), Gaps = 169/715 (23%)

Query: 1   MNNWLGFSLSPQEQLPSSQTDHHHHHQDHSQDSVSHRLGFNSDELSGAVVSGDCFDLTS- 59
           MNNWLGFSLSP +Q        +HH  D   DS + R   +       V  G CFDL + 
Sbjct: 4   MNNWLGFSLSPHDQ--------NHHRTD--VDSSTTRTAVD-------VAGGYCFDLAAP 46

Query: 60  ADSTTA-------SFSI-LEAFNRNNN-HSQEWNMKGLGMNTDAMLMATSCNDQNQEPKL 110
           +D ++A        F + LEAF R+NN HS++W++ G   N                PKL
Sbjct: 47  SDESSAVQTSFLSPFGVTLEAFTRDNNSHSRDWDINGGACNNINNNEQNG-------PKL 99

Query: 111 ENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNNNNARTSNNG 170
           ENFL               T++Y+T                        N      + + 
Sbjct: 100 ENFLG------------RTTTIYNT------------------------NETVVDGNGDC 123

Query: 171 GENSNNNNSSIGLSMIKTWLRNQPAPATGPAPAPAQAEAVSMNGSGGSSAQSLSLSMSTG 230
           G        S+GLSMIKTWL N              A  +S++ +  +S  +   +    
Sbjct: 124 GGGDGGGGGSLGLSMIKTWLSNHSVANANHQDNGNGARGLSLSMNSSTSDSNNYNNNDDV 183

Query: 231 SHQ---TGAIEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQ 287
             +      +E  P+K+I++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQTRKGRQ
Sbjct: 184 VQEKTIVDVVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQ 243

Query: 288 ---GGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKS 344
              GGYDKEEKAARAYDLAALKYWGTTTTTNFP+S YEKEVEEMKHMTRQEYVASLRRKS
Sbjct: 244 VYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKS 303

Query: 345 SGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL 404
           SGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYDIAAIKFRGL
Sbjct: 304 SGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGL 363

Query: 405 NAVTNFDMTRYDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLTA 464
           +AVTNFDM RY+V +ILES +LPIG +AKRLKD        +    V     N+S     
Sbjct: 364 SAVTNFDMNRYNVKAILESPSLPIGSSAKRLKDVNNPVPAMMISNNVSESANNVS----- 418

Query: 465 DHGWPAIAAFQQAQAHHHHQHQPYSSLQP-----FGY---------GQRIWCKQEQDEFN 510
             GW       Q  A  HHQ    S LQ       GY           R+  KQE+++  
Sbjct: 419 --GW-------QNTAFQHHQGMDLSLLQQQQERYVGYYNGGNLSTESTRVCFKQEEEQ-- 467

Query: 511 HQLQLGSNISNTHNFFQPSVMHNLMNMESSSLEHSCSSNNSVIYNNGDHTNGSYQVGYGS 570
                        +F + S  H + N++     HS +S++SV       + G YQ     
Sbjct: 468 ------------QHFLRNSPSH-MTNVD----HHSSTSDDSVTVCGNVVSYGGYQ----- 505

Query: 571 NNNNNNGGFVIPMGTVIASNNDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYY 630
                  GF IP+GT +                         +   T++   Y ARN YY
Sbjct: 506 -------GFAIPVGTSVN------------------------YDPFTAAEIAYNARNHYY 534

Query: 631 LPQQQSSASLVKAAGAYDNWVPTAVPTLAQRSGNIAL-----CHGAPTFTVWNDT 680
             Q Q    + ++ G      P A+      S N+         GAPTF+VWNDT
Sbjct: 535 YAQHQQQQQIQQSPGGD---FPVAISN--NHSSNMYFHGEGGGEGAPTFSVWNDT 584
Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1 Back     alignment and function description
>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1 Back     alignment and function description
>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2 Back     alignment and function description
>sp|Q52QU2|AIL6_ARATH AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1 Back     alignment and function description
>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1 Back     alignment and function description
>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2 Back     alignment and function description
>sp|Q6J9N8|AIL7_ARATH AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
224098764718 AP2 domain-containing transcription fact 0.911 0.863 0.623 0.0
255547490729 Protein AINTEGUMENTA, putative [Ricinus 0.927 0.865 0.624 0.0
359476738730 PREDICTED: AP2-like ethylene-responsive 0.932 0.868 0.611 0.0
147774753731 hypothetical protein VITISV_008633 [Viti 0.932 0.867 0.611 0.0
224112411604 AP2 domain-containing transcription fact 0.827 0.932 0.604 0.0
351725631707 babyboom 1 [Glycine max] gi|310892427|gb 0.883 0.850 0.537 1e-173
356568527710 PREDICTED: AP2-like ethylene-responsive 0.898 0.860 0.529 1e-171
357507847689 AP2-like ethylene-responsive transcripti 0.897 0.885 0.514 1e-170
58761187686 AP2/EREBP transcription factor BABY BOOM 0.897 0.889 0.514 1e-170
297735232520 unnamed protein product [Vitis vinifera] 0.558 0.730 0.690 1e-168
>gi|224098764|ref|XP_002311259.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222851079|gb|EEE88626.1| AP2 domain-containing transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/772 (62%), Positives = 542/772 (70%), Gaps = 152/772 (19%)

Query: 2   NNWLGFSLSPQEQLPSSQTDHHHHHQDHSQDSVSHRLGFNSDELSGAVVSGDCFDLTSAD 61
           NNWLGFSLSPQE LPSSQ+DHH    DH Q++ S RL F+SDE+SG  VSG+ FDLTS D
Sbjct: 5   NNWLGFSLSPQE-LPSSQSDHH----DHPQNTDS-RLRFHSDEISGTDVSGESFDLTS-D 57

Query: 62  STT------ASFSILEAFNRNNNHSQEWN-MKGLGMNTDA---------MLMATSCN--- 102
           ST       ASF ILEAF   NN SQ+WN MK  G+N D          + M +SCN   
Sbjct: 58  STAPSLNLPASFGILEAFR--NNQSQDWNNMKRSGINEDTSYNTTSDVPIFMGSSCNSQN 115

Query: 103 -DQNQEPKLENFLDGHSFSNHEQKLHGCTSVYDTPTASTVTGDYMFQNCSLQLPLDENNN 161
            DQNQEPKLENFL GHSF NHE KL+ C+++Y +      TG YMF NCSLQLP ++ +N
Sbjct: 116 IDQNQEPKLENFLGGHSFGNHEHKLNVCSTMYGS------TGHYMFHNCSLQLPSEDASN 169

Query: 162 NNARTSNNGGENSNNNNSSI----GLSMIKTWLRNQPAPATGPAPAPAQAEAVSMNGSGG 217
              RTS+NGG +++ NN++     GLSMIKTWL+NQPAP           +  + N S G
Sbjct: 170 E--RTSSNGGADTSINNNNTNSSIGLSMIKTWLKNQPAPT----------QQDTNNKSNG 217

Query: 218 SSAQSLSLSMSTGSH--------------------------------------QTGAIEA 239
             AQSLSLSMSTGS                                       QTGAIE 
Sbjct: 218 G-AQSLSLSMSTGSQSGSDLPLLAVNGGGNRTRGEQSSSDNNKQQKTTPSLDSQTGAIEV 276

Query: 240 VPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARA 299
           VPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKE+KAARA
Sbjct: 277 VPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEDKAARA 336

Query: 300 YDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR 359
           YDLAALKYWGTTTTTNFP+SNYEKE+EEMKHMTRQE+VASLRRKSSGFSRGASIYRGVTR
Sbjct: 337 YDLAALKYWGTTTTTNFPMSNYEKEIEEMKHMTRQEHVASLRRKSSGFSRGASIYRGVTR 396

Query: 360 HHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVNS 419
           HHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDM RYDVNS
Sbjct: 397 HHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVNS 456

Query: 420 ILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSSQLT---------ADHGWPA 470
           I+ESSTLPIGGAAKRLK+AE  AE+T  R     D ++ SSQLT         A HGWP 
Sbjct: 457 IMESSTLPIGGAAKRLKEAEH-AEITT-RVQRTDDHDSTSSQLTDGISNYGTAAHHGWPT 514

Query: 471 IAAFQQAQAHHHHQHQPYSSLQPFGYGQRIWCKQEQDEFN------HQLQLGSNISNTHN 524
           I AFQQAQA   H          + YGQR+WCKQEQD  N      HQLQLG    NT N
Sbjct: 515 I-AFQQAQAFTMH----------YPYGQRLWCKQEQDSDNHSFQELHQLQLG----NTQN 559

Query: 525 FFQPSVMHNLMNMESSSLEHSCSSNNSVIYNN------GDHTNGSYQ-VGYGSNNNNNNG 577
           F QPSV+HN+M+MESSS+EHS S ++SV+Y++      G  TNGSYQ +GYGSN      
Sbjct: 560 FLQPSVLHNVMSMESSSMEHS-SGSDSVMYSSGGHDGTGTGTNGSYQGIGYGSNT----- 613

Query: 578 GFVIPMGTVIASN---NDHGFGESDHQAAAKALAFENMFSSSTSSSDPYQARNLYYLPQQ 634
           G+ IPM TVIA++    D G G  D     KAL +ENMF    SSSDPY ARNLYYL  Q
Sbjct: 614 GYAIPMATVIANDVNTQDQGNGYGD--GEVKALGYENMF----SSSDPYHARNLYYL-SQ 666

Query: 635 QSSASLVKAAGAYD------NWVPTAVPTLAQRSGNIALCHGAPTFTVWNDT 680
           QSSA ++KA+ AYD      NW+PTAVPT+A RS N+A+CHGAPTFTVWN++
Sbjct: 667 QSSAGVIKAS-AYDQGSTCNNWLPTAVPTIAARSNNMAVCHGAPTFTVWNES 717

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547490|ref|XP_002514802.1| Protein AINTEGUMENTA, putative [Ricinus communis] gi|223545853|gb|EEF47356.1| Protein AINTEGUMENTA, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359476738|ref|XP_002269840.2| PREDICTED: AP2-like ethylene-responsive transcription factor BBM-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774753|emb|CAN63760.1| hypothetical protein VITISV_008633 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112411|ref|XP_002316179.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222865219|gb|EEF02350.1| AP2 domain-containing transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351725631|ref|NP_001237099.1| babyboom 1 [Glycine max] gi|310892427|gb|ADP37371.1| babyboom 1 [Glycine max] Back     alignment and taxonomy information
>gi|356568527|ref|XP_003552462.1| PREDICTED: AP2-like ethylene-responsive transcription factor BBM2-like [Glycine max] Back     alignment and taxonomy information
>gi|357507847|ref|XP_003624212.1| AP2-like ethylene-responsive transcription factor BBM [Medicago truncatula] gi|355499227|gb|AES80430.1| AP2-like ethylene-responsive transcription factor BBM [Medicago truncatula] Back     alignment and taxonomy information
>gi|58761187|gb|AAW82334.1| AP2/EREBP transcription factor BABY BOOM [Medicago truncatula] Back     alignment and taxonomy information
>gi|297735232|emb|CBI17594.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
TAIR|locus:2178915584 BBM "BABY BOOM" [Arabidopsis t 0.417 0.486 0.659 4.5e-113
TAIR|locus:2091891574 PLT1 "PLETHORA 1" [Arabidopsis 0.425 0.503 0.629 1.5e-98
TAIR|locus:2008216568 PLT2 "PLETHORA 2" [Arabidopsis 0.425 0.508 0.643 2.6e-95
TAIR|locus:2173009558 AIL5 "AINTEGUMENTA-like 5" [Ar 0.302 0.369 0.804 1.6e-92
TAIR|locus:2155680498 AIL7 "AINTEGUMENTA-like 7" [Ar 0.314 0.429 0.714 1.3e-88
TAIR|locus:2137559555 ANT "AINTEGUMENTA" [Arabidopsi 0.294 0.360 0.773 1.9e-85
TAIR|locus:2030265415 AT1G72570 [Arabidopsis thalian 0.288 0.472 0.783 1.2e-83
TAIR|locus:2200477345 ADAP "ARIA-interacting double 0.244 0.481 0.668 2.7e-61
TAIR|locus:2017829313 WRI4 "WRINKLED 4" [Arabidopsis 0.244 0.530 0.674 1.2e-60
TAIR|locus:2005493432 AP2 "APETALA 2" [Arabidopsis t 0.248 0.391 0.474 4.9e-37
TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.5e-113, Sum P(3) = 4.5e-113
 Identities = 192/291 (65%), Positives = 211/291 (72%)

Query:   181 IGLSMIKTWLRNQXXXXXXXXXXXXXXXXVSMNXXXXXXXXXXXXXXXXXXHQ---TGAI 237
             +GLSMIKTWL N                 +S++                   +      +
Sbjct:   134 LGLSMIKTWLSNHSVANANHQDNGNGARGLSLSMNSSTSDSNNYNNNDDVVQEKTIVDVV 193

Query:   238 EAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQ---GGYDKEE 294
             E  P+K+I++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQTRKGRQ   GGYDKEE
Sbjct:   194 ETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEE 253

Query:   295 KAARAYDLAALKYWGTTTTTNFPISNYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIY 354
             KAARAYDLAALKYWGTTTTTNFP+S YEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIY
Sbjct:   254 KAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIY 313

Query:   355 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGLNAVTNFDMTR 414
             RGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQ      YDIAAIKFRGL+AVTNFDM R
Sbjct:   314 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNR 373

Query:   415 YDVNSILESSTLPIGGAAKRLKDAEQAAEMTIDRPTVVADDENMSS-QLTA 464
             Y+V +ILES +LPIG +AKRLKD        +    V     N+S  Q TA
Sbjct:   374 YNVKAILESPSLPIGSSAKRLKDVNNPVPAMMISNNVSESANNVSGWQNTA 424
GO:0003677 "DNA binding" evidence=IEA;ISS;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS
GO:0005634 "nucleus" evidence=ISM;IC
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS
GO:0009887 "organ morphogenesis" evidence=ISS;IMP
TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PQQ4BBM_ARATHNo assigned EC number0.42930.80290.9349yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025029001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (643 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
smart0038064 smart00380, AP2, DNA-binding domain in plant prote 2e-26
cd0001861 cd00018, AP2, DNA-binding domain found in transcri 9e-24
smart0038064 smart00380, AP2, DNA-binding domain in plant prote 7e-22
cd0001861 cd00018, AP2, DNA-binding domain found in transcri 1e-18
pfam0084753 pfam00847, AP2, AP2 domain 1e-10
pfam0084753 pfam00847, AP2, AP2 domain 3e-09
>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs Back     alignment and domain information 
 Score =  101 bits (255), Expect = 2e-26
 Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 353 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDM 412
            YRGV +    G+W A I   +  K ++LGTF T EEAA AYD AA KFRG +A  NF  
Sbjct: 1   KYRGVRQRPW-GKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 413 TRYDV 417
           + YD 
Sbjct: 60  SLYDS 64

Length = 64
>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein) Back     alignment and domain information
>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs Back     alignment and domain information
>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein) Back     alignment and domain information
>gnl|CDD|216148 pfam00847, AP2, AP2 domain Back     alignment and domain information
>gnl|CDD|216148 pfam00847, AP2, AP2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 680
smart0038064 AP2 DNA-binding domain in plant proteins such as A 99.71
cd0001861 AP2 DNA-binding domain found in transcription regu 99.7
cd0001861 AP2 DNA-binding domain found in transcription regu 99.68
smart0038064 AP2 DNA-binding domain in plant proteins such as A 99.68
PHA00280121 putative NHN endonuclease 99.38
PHA00280121 putative NHN endonuclease 99.08
PF0084756 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis- 98.86
PF0084756 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis- 98.83
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs Back     alignment and domain information 
Probab=99.71  E-value=1.1e-17  Score=137.68  Aligned_cols=63  Identities=51%  Similarity=0.787  Sum_probs=58.8

Q ss_pred             ccccceeeccCCceEEEeccccCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCccCCCCCccc
Q 038243          353 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYD  416 (680)
Q Consensus       353 ~YRGV~r~r~~GKW~AeIr~~~~gKri~LGTFdTeEEAArAYD~AAiklrG~~A~tNFp~s~y~  416 (680)
                      +|+||++ +++|||+|+|+.+.++++++||+|+|+||||+|||.|+++++|..+++|||.+.|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899987 46799999998777899999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein) Back     alignment and domain information
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein) Back     alignment and domain information
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs Back     alignment and domain information
>PHA00280 putative NHN endonuclease Back     alignment and domain information
>PHA00280 putative NHN endonuclease Back     alignment and domain information
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes Back     alignment and domain information
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
1gcc_A63 Ethylene responsive element binding factor 1; tran 5e-15
1gcc_A63 Ethylene responsive element binding factor 1; tran 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63 Back     alignment and structure
 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 354 YRGVTRHHQHGRWQARIGRVAGNKD-LYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNF 410
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG  A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
1gcc_A63 Ethylene responsive element binding factor 1; tran 99.81
1gcc_A63 Ethylene responsive element binding factor 1; tran 99.79
1u3e_M174 HNH homing endonuclease; HNH catalytic motif, heli 93.77
3igm_B77 PF14_0633 protein; AP2 domain, specific transcript 93.01
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Back     alignment and structure
Probab=99.81  E-value=1.5e-20  Score=154.56  Aligned_cols=60  Identities=43%  Similarity=0.684  Sum_probs=55.1

Q ss_pred             ccccceeeccCCceEEEeccccC-CcccccCCCCCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 038243          353 IYRGVTRHHQHGRWQARIGRVAG-NKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMT  413 (680)
Q Consensus       353 ~YRGV~r~r~~GKW~AeIr~~~~-gKri~LGTFdTeEEAArAYD~AAiklrG~~A~tNFp~s  413 (680)
                      +||||+++ ++|||+|+|+.+.. ++++|||+|+|+||||+|||.|+++++|..++||||++
T Consensus         2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            69999865 69999999987664 68999999999999999999999999999999999974
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Back     alignment and structure
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1 Back     alignment and structure
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 680
d1gcca_63 d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr 4e-20
d1gcca_63 d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr 4e-20
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.4 bits (204), Expect = 4e-20
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 354 YRGVTRHHQHGRWQARIGRVAGN-KDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNF 410
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG  A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
d1gcca_63 GCC-box binding domain {Mouse-ear cress (Arabidops 99.82
d1gcca_63 GCC-box binding domain {Mouse-ear cress (Arabidops 99.81
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2.3e-21  Score=157.95  Aligned_cols=61  Identities=34%  Similarity=0.658  Sum_probs=56.2

Q ss_pred             ceeeeeeecCCCceEEEEecCCcccCCcccccccCCCCCHHHHHHHHHHHhhhcccccccccCCCC
Q 038243          254 IYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPIS  319 (680)
Q Consensus       254 ~YRGV~r~kwtGRW~AeI~d~~~rr~~k~kr~~LGtFdTeEeAArAYD~AAlkl~G~~A~lNFP~s  319 (680)
                      +||||+++++ |||+|+|+++.    .+++++|||+|+|+||||+|||+||++++|+.+.+|||++
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~~----~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDPA----KNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETT----TTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecCC----CCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999999987 99999999974    3557899999999999999999999999999999999975
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure